Query 002787
Match_columns 881
No_of_seqs 440 out of 2895
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02877 alpha-amylase/limit d 100.0 2E-189 4E-194 1684.1 66.9 776 67-875 72-876 (970)
2 TIGR02103 pullul_strch alpha-1 100.0 2E-181 4E-186 1618.8 61.8 767 90-874 1-806 (898)
3 TIGR02102 pullulan_Gpos pullul 100.0 6E-104 1E-108 964.6 49.1 561 138-873 268-915 (1111)
4 TIGR02104 pulA_typeI pullulana 100.0 2.1E-91 4.6E-96 826.2 46.9 515 200-872 2-548 (605)
5 PRK03705 glycogen debranching 100.0 1.6E-89 3.4E-94 811.0 41.8 492 206-873 8-582 (658)
6 COG1523 PulA Type II secretory 100.0 1.5E-89 3.4E-94 805.2 35.9 498 206-865 16-600 (697)
7 TIGR02100 glgX_debranch glycog 100.0 1E-86 2.2E-91 791.8 44.1 492 206-872 3-594 (688)
8 PRK14510 putative bifunctional 100.0 2.7E-76 5.8E-81 736.0 43.6 489 206-865 12-581 (1221)
9 TIGR02402 trehalose_TreZ malto 100.0 7.6E-71 1.7E-75 642.9 37.3 464 219-868 1-512 (542)
10 KOG0470 1,4-alpha-glucan branc 100.0 3.1E-70 6.7E-75 627.5 23.8 617 92-871 6-672 (757)
11 TIGR01515 branching_enzym alph 100.0 2.6E-61 5.6E-66 570.6 37.6 303 209-623 16-351 (613)
12 PRK05402 glycogen branching en 100.0 1.1E-60 2.4E-65 574.6 38.9 310 208-623 118-460 (726)
13 PRK12313 glycogen branching en 100.0 1.2E-60 2.7E-65 567.3 37.7 310 208-623 25-364 (633)
14 PRK14706 glycogen branching en 100.0 1.2E-57 2.6E-62 538.7 38.1 307 208-623 25-360 (639)
15 PRK12568 glycogen branching en 100.0 2.5E-57 5.3E-62 536.3 38.8 307 209-623 126-464 (730)
16 PRK14705 glycogen branching en 100.0 4.1E-56 8.8E-61 547.3 37.2 303 209-623 622-960 (1224)
17 PLN02447 1,4-alpha-glucan-bran 100.0 1E-52 2.3E-57 497.9 39.3 312 200-623 97-448 (758)
18 COG0296 GlgB 1,4-alpha-glucan 100.0 4.1E-50 8.8E-55 466.1 33.6 311 209-625 25-361 (628)
19 PRK10785 maltodextrin glucosid 100.0 1.5E-48 3.2E-53 460.8 34.9 433 214-864 16-534 (598)
20 PLN02960 alpha-amylase 100.0 6.1E-47 1.3E-51 448.8 38.0 270 247-623 316-613 (897)
21 TIGR02456 treS_nterm trehalose 100.0 5E-45 1.1E-49 426.7 25.6 198 332-623 3-242 (539)
22 TIGR02403 trehalose_treC alpha 100.0 1.2E-44 2.6E-49 423.6 26.7 372 332-864 2-474 (543)
23 PRK09505 malS alpha-amylase; R 100.0 3E-44 6.5E-49 426.0 27.5 361 330-864 185-658 (683)
24 PRK10933 trehalose-6-phosphate 100.0 3.7E-44 8E-49 419.6 26.1 377 331-864 7-480 (551)
25 PF00128 Alpha-amylase: Alpha 100.0 5.6E-40 1.2E-44 350.8 14.2 178 358-625 1-202 (316)
26 PRK09441 cytoplasmic alpha-amy 100.0 5E-38 1.1E-42 363.1 23.0 182 358-625 19-268 (479)
27 PLN02361 alpha-amylase 100.0 4.4E-36 9.6E-41 338.1 25.0 167 371-624 32-208 (401)
28 PLN00196 alpha-amylase; Provis 100.0 5.9E-36 1.3E-40 340.2 21.8 174 357-624 40-232 (428)
29 PLN02784 alpha-amylase 100.0 1.9E-31 4.1E-36 316.0 21.6 194 332-624 496-702 (894)
30 PLN03244 alpha-amylase; Provis 100.0 2.9E-29 6.3E-34 293.9 32.0 236 249-623 323-588 (872)
31 COG0366 AmyA Glycosidases [Car 100.0 5.6E-30 1.2E-34 294.4 21.5 190 335-606 1-232 (505)
32 PRK13840 sucrose phosphorylase 100.0 1.8E-28 3.9E-33 281.5 17.4 169 358-623 17-236 (495)
33 KOG0471 Alpha-amylase [Carbohy 99.9 3.1E-26 6.7E-31 268.2 19.8 403 331-858 14-472 (545)
34 TIGR03852 sucrose_gtfA sucrose 99.9 2.6E-26 5.6E-31 262.3 15.9 144 464-623 45-233 (470)
35 TIGR02455 TreS_stutzeri trehal 99.9 1.7E-21 3.7E-26 225.7 21.8 151 372-590 78-301 (688)
36 PF11852 DUF3372: Domain of un 99.8 1.3E-21 2.7E-26 195.5 1.8 79 797-875 1-79 (168)
37 TIGR02401 trehalose_TreY malto 99.8 5.5E-20 1.2E-24 220.7 15.3 179 358-627 13-290 (825)
38 smart00642 Aamy Alpha-amylase 99.8 5.2E-19 1.1E-23 178.2 8.8 97 339-517 1-97 (166)
39 cd02860 Pullulanase_N_term Pul 99.7 6E-18 1.3E-22 156.3 11.3 96 210-310 1-97 (100)
40 PF14872 GHL5: Hypothetical gl 99.7 1.1E-15 2.5E-20 174.8 18.2 338 208-605 26-422 (811)
41 cd02856 Glycogen_debranching_e 99.7 5.7E-16 1.2E-20 144.1 11.1 91 209-302 1-95 (103)
42 KOG2212 Alpha-amylase [Carbohy 99.6 7E-16 1.5E-20 166.0 12.0 151 466-626 79-257 (504)
43 cd02852 Isoamylase_N_term Isoa 99.6 2E-15 4.3E-20 143.8 11.1 94 211-304 1-101 (119)
44 cd02853 MTHase_N_term Maltooli 99.5 5.8E-14 1.3E-18 126.2 8.7 81 211-309 1-85 (85)
45 PRK14511 maltooligosyl trehalo 99.5 3.5E-14 7.7E-19 171.9 8.7 82 358-519 17-98 (879)
46 PF02922 CBM_48: Carbohydrate- 99.4 3.3E-13 7.2E-18 120.4 9.3 79 209-294 1-85 (85)
47 PRK14507 putative bifunctional 99.4 1.4E-13 3.1E-18 175.4 6.5 80 358-517 755-834 (1693)
48 cd02855 Glycogen_branching_enz 99.2 2E-10 4.4E-15 106.3 10.7 84 209-301 9-99 (106)
49 cd02854 Glycogen_branching_enz 99.2 1.1E-10 2.5E-15 108.3 8.8 77 215-300 3-88 (99)
50 TIGR01531 glyc_debranch glycog 99.1 1.1E-10 2.4E-15 145.6 6.8 90 356-522 127-217 (1464)
51 COG3280 TreY Maltooligosyl tre 99.0 2.9E-10 6.3E-15 133.2 5.8 76 370-518 21-96 (889)
52 cd02858 Esterase_N_term Estera 98.9 7.7E-09 1.7E-13 93.3 9.0 69 216-298 5-74 (85)
53 PRK05402 glycogen branching en 98.4 5.6E-07 1.2E-11 110.2 7.9 76 209-297 20-98 (726)
54 cd02688 E_set E or "early" set 98.2 4.8E-06 1E-10 72.7 7.9 56 217-276 4-61 (83)
55 PF14701 hDGE_amylase: glucano 98.1 5.7E-06 1.2E-10 94.5 8.3 84 371-522 25-109 (423)
56 cd02861 E_set_proteins_like E 98.1 1.2E-05 2.6E-10 72.0 7.9 68 218-301 3-73 (82)
57 PF02638 DUF187: Glycosyl hydr 97.8 0.00015 3.3E-09 80.7 11.8 87 492-583 72-161 (311)
58 PF14871 GHL6: Hypothetical gl 97.8 0.00021 4.5E-09 70.1 10.8 97 465-584 27-132 (132)
59 PF02324 Glyco_hydro_70: Glyco 97.0 0.0024 5.2E-08 75.9 8.9 34 476-516 640-673 (809)
60 COG1649 Uncharacterized protei 96.8 0.0074 1.6E-07 69.4 11.5 88 492-585 117-208 (418)
61 TIGR02401 trehalose_TreY malto 96.3 0.0014 3.1E-08 80.7 0.9 100 745-865 617-740 (825)
62 PF13199 Glyco_hydro_66: Glyco 96.0 0.033 7.1E-07 66.7 10.8 95 488-588 168-270 (559)
63 cd06597 GH31_transferase_CtsY 96.0 0.023 5E-07 64.1 9.0 93 492-586 87-187 (340)
64 KOG3625 Alpha amylase [Carbohy 95.8 0.0096 2.1E-07 72.5 5.1 43 471-521 185-228 (1521)
65 cd06594 GH31_glucosidase_YihQ 95.4 0.024 5.3E-07 63.4 6.1 91 492-588 73-168 (317)
66 PF02065 Melibiase: Melibiase; 95.2 0.14 3E-06 59.2 11.4 88 492-588 106-195 (394)
67 cd06592 GH31_glucosidase_KIAA1 95.2 0.041 8.8E-07 61.1 6.9 89 491-586 71-165 (303)
68 PF00150 Cellulase: Cellulase 94.9 0.44 9.5E-06 50.9 13.6 27 487-513 59-85 (281)
69 PRK14511 maltooligosyl trehalo 94.8 0.02 4.3E-07 71.4 3.5 82 761-866 712-794 (879)
70 cd06593 GH31_xylosidase_YicI Y 94.6 0.073 1.6E-06 59.0 7.0 91 492-590 68-163 (308)
71 PF02324 Glyco_hydro_70: Glyco 94.6 0.029 6.3E-07 67.2 3.8 97 550-659 143-253 (809)
72 cd06599 GH31_glycosidase_Aec37 94.5 0.075 1.6E-06 59.4 6.7 87 492-585 75-167 (317)
73 cd06591 GH31_xylosidase_XylS X 94.4 0.085 1.8E-06 59.0 6.9 88 492-586 68-159 (319)
74 PF13200 DUF4015: Putative gly 93.9 0.16 3.6E-06 56.8 7.9 87 489-586 60-147 (316)
75 cd06602 GH31_MGAM_SI_GAA This 93.7 0.16 3.4E-06 57.5 7.4 92 493-586 69-165 (339)
76 cd06600 GH31_MGAM-like This fa 93.4 0.15 3.3E-06 57.1 6.5 90 492-586 66-160 (317)
77 PLN02960 alpha-amylase 92.4 0.14 3.1E-06 63.8 5.0 67 209-275 119-198 (897)
78 cd06598 GH31_transferase_CtsZ 92.4 0.24 5.2E-06 55.4 6.4 88 492-586 72-164 (317)
79 cd02859 AMPKbeta_GBD_like AMP- 92.1 0.4 8.7E-06 42.8 6.2 60 218-295 3-65 (79)
80 PRK10426 alpha-glucosidase; Pr 92.1 0.81 1.8E-05 56.1 10.8 91 492-589 271-366 (635)
81 cd02857 CD_pullulan_degrading_ 90.9 0.99 2.1E-05 42.2 7.8 62 209-275 12-80 (116)
82 PF01055 Glyco_hydro_31: Glyco 90.5 0.2 4.4E-06 58.1 3.5 92 491-586 84-180 (441)
83 cd06542 GH18_EndoS-like Endo-b 90.3 1.6 3.4E-05 47.0 9.8 64 490-586 51-114 (255)
84 cd02875 GH18_chitobiase Chitob 90.3 0.88 1.9E-05 51.9 8.3 73 493-603 67-148 (358)
85 PRK14582 pgaB outer membrane N 89.9 2.2 4.8E-05 52.5 11.6 33 553-585 435-467 (671)
86 cd06595 GH31_xylosidase_XylS-l 89.6 0.52 1.1E-05 52.2 5.6 83 491-584 75-157 (292)
87 COG1523 PulA Type II secretory 89.1 0.93 2E-05 55.9 7.6 88 202-302 59-156 (697)
88 cd02871 GH18_chitinase_D-like 88.9 2.4 5.1E-05 47.4 10.1 79 490-604 60-142 (312)
89 PRK10658 putative alpha-glucos 88.3 0.89 1.9E-05 56.0 6.8 91 491-589 326-421 (665)
90 cd06545 GH18_3CO4_chitinase Th 88.2 2.3 5E-05 45.9 9.2 63 491-586 47-109 (253)
91 PF11941 DUF3459: Domain of un 88.2 0.1 2.2E-06 46.9 -1.0 24 842-865 1-24 (89)
92 cd06604 GH31_glucosidase_II_Ma 87.0 1.2 2.5E-05 50.4 6.3 89 492-586 66-159 (339)
93 COG1501 Alpha-glucosidases, fa 86.6 3.4 7.3E-05 51.9 10.4 90 492-588 323-417 (772)
94 cd06603 GH31_GANC_GANAB_alpha 86.0 1.4 3.1E-05 49.7 6.3 89 492-585 66-161 (339)
95 cd06589 GH31 The enzymes of gl 81.6 1.9 4.1E-05 47.0 4.7 49 492-586 68-116 (265)
96 PRK12568 glycogen branching en 79.4 5.6 0.00012 49.6 8.2 74 209-297 29-105 (730)
97 PLN02763 hydrolase, hydrolyzin 78.9 4.2 9.1E-05 52.1 7.1 87 492-584 243-334 (978)
98 cd06546 GH18_CTS3_chitinase GH 75.6 15 0.00033 40.0 9.4 79 491-602 60-138 (256)
99 PRK11052 malQ 4-alpha-glucanot 75.5 21 0.00045 44.6 11.6 29 358-393 162-190 (695)
100 PRK14508 4-alpha-glucanotransf 75.4 30 0.00064 41.5 12.5 164 490-756 198-401 (497)
101 cd06547 GH85_ENGase Endo-beta- 74.3 7.6 0.00017 44.2 7.0 83 494-605 50-133 (339)
102 PRK05692 hydroxymethylglutaryl 74.1 55 0.0012 36.4 13.5 77 489-603 119-196 (287)
103 PLN02635 disproportionating en 74.0 28 0.0006 42.2 11.8 21 492-512 226-246 (538)
104 TIGR01531 glyc_debranch glycog 72.8 7.4 0.00016 51.3 7.1 62 555-626 486-547 (1464)
105 PF01120 Alpha_L_fucos: Alpha- 72.8 12 0.00025 42.6 8.1 96 491-605 139-237 (346)
106 cd02874 GH18_CFLE_spore_hydrol 71.5 12 0.00026 41.6 7.6 67 492-586 47-113 (313)
107 cd06564 GH20_DspB_LnbB-like Gl 71.3 50 0.0011 37.2 12.6 111 489-621 81-202 (326)
108 PF02446 Glyco_hydro_77: 4-alp 71.0 14 0.0003 44.2 8.5 171 490-757 192-391 (496)
109 cd06568 GH20_SpHex_like A subg 69.6 47 0.001 37.7 11.9 74 489-575 74-153 (329)
110 cd06562 GH20_HexA_HexB-like Be 67.8 35 0.00077 38.9 10.5 80 489-576 69-149 (348)
111 PF02903 Alpha-amylase_N: Alph 67.0 15 0.00033 35.1 6.3 63 214-276 18-89 (120)
112 PRK14705 glycogen branching en 66.4 15 0.00032 48.5 7.9 76 209-297 522-601 (1224)
113 COG1640 MalQ 4-alpha-glucanotr 66.4 1.6E+02 0.0035 35.7 15.8 20 739-758 392-411 (520)
114 smart00812 Alpha_L_fucos Alpha 65.2 41 0.00089 39.1 10.4 92 491-606 129-225 (384)
115 cd06601 GH31_lyase_GLase GLase 64.3 15 0.00033 41.6 6.7 67 492-585 66-132 (332)
116 TIGR00217 malQ 4-alpha-glucano 62.9 69 0.0015 38.7 12.0 22 492-513 214-235 (513)
117 PF02449 Glyco_hydro_42: Beta- 62.0 33 0.00071 39.2 8.9 105 490-603 47-159 (374)
118 TIGR01370 cysRS possible cyste 61.0 44 0.00096 37.8 9.4 100 470-588 65-172 (315)
119 PF00490 ALAD: Delta-aminolevu 59.5 1.4E+02 0.003 34.0 12.7 156 335-604 28-185 (324)
120 PLN03244 alpha-amylase; Provis 55.5 14 0.00031 46.3 4.7 55 209-263 122-180 (872)
121 PLN02950 4-alpha-glucanotransf 55.1 2E+02 0.0043 37.3 14.8 57 218-275 154-218 (909)
122 cd06570 GH20_chitobiase-like_1 54.9 84 0.0018 35.4 10.4 77 489-575 67-146 (311)
123 KOG3625 Alpha amylase [Carbohy 54.5 30 0.00066 43.8 7.1 62 556-627 509-570 (1521)
124 PF14488 DUF4434: Domain of un 53.7 44 0.00095 34.2 7.3 24 491-514 66-89 (166)
125 PF03644 Glyco_hydro_85: Glyco 51.8 10 0.00022 42.7 2.5 20 494-513 46-65 (311)
126 KOG1065 Maltase glucoamylase a 51.7 35 0.00076 42.9 7.2 87 492-584 353-446 (805)
127 cd02877 GH18_hevamine_XipI_cla 49.5 65 0.0014 35.8 8.3 18 491-508 60-77 (280)
128 PF01301 Glyco_hydro_35: Glyco 48.2 16 0.00034 41.2 3.4 21 490-510 63-83 (319)
129 PF00704 Glyco_hydro_18: Glyco 47.6 34 0.00074 37.8 5.9 47 557-603 96-152 (343)
130 cd06563 GH20_chitobiase-like T 47.0 1.3E+02 0.0028 34.5 10.5 77 489-575 85-164 (357)
131 cd00598 GH18_chitinase-like Th 46.0 33 0.00071 35.2 5.1 34 556-589 84-117 (210)
132 PF07745 Glyco_hydro_53: Glyco 45.6 49 0.0011 37.7 6.7 29 489-517 57-85 (332)
133 PRK14510 putative bifunctional 45.0 98 0.0021 41.3 10.2 24 372-395 750-773 (1221)
134 cd02876 GH18_SI-CLP Stabilin-1 43.0 31 0.00068 38.5 4.7 29 556-584 88-116 (318)
135 PF03198 Glyco_hydro_72: Gluca 42.2 32 0.00068 38.9 4.4 24 492-515 81-104 (314)
136 cd07944 DRE_TIM_HOA_like 4-hyd 42.0 1.4E+02 0.003 32.8 9.4 72 489-604 108-180 (266)
137 cd06549 GH18_trifunctional GH1 41.6 45 0.00098 37.0 5.6 32 555-586 83-114 (298)
138 PF13204 DUF4038: Protein of u 41.6 56 0.0012 36.3 6.3 34 470-514 77-110 (289)
139 COG2342 Predicted extracellula 41.4 2E+02 0.0043 32.2 10.2 125 469-605 43-185 (300)
140 PF14701 hDGE_amylase: glucano 41.3 51 0.0011 38.8 6.1 50 555-606 373-422 (423)
141 cd06543 GH18_PF-ChiA-like PF-C 41.1 94 0.002 34.8 8.0 79 491-605 55-135 (294)
142 cd02879 GH18_plant_chitinase_c 39.9 53 0.0012 36.5 5.8 47 556-602 88-141 (299)
143 cd00384 ALAD_PBGS Porphobilino 39.6 5.9E+02 0.013 29.0 13.6 51 336-390 23-73 (314)
144 cd06569 GH20_Sm-chitobiase-lik 37.9 91 0.002 37.0 7.6 29 489-517 96-125 (445)
145 PF00728 Glyco_hydro_20: Glyco 37.6 48 0.001 37.2 5.1 84 489-581 72-161 (351)
146 cd06548 GH18_chitinase The GH1 37.5 67 0.0015 36.0 6.2 30 556-585 105-134 (322)
147 PF05913 DUF871: Bacterial pro 36.1 34 0.00074 39.3 3.7 25 489-513 46-70 (357)
148 smart00636 Glyco_18 Glycosyl h 35.8 77 0.0017 35.3 6.3 32 556-587 87-118 (334)
149 PF10566 Glyco_hydro_97: Glyco 34.8 87 0.0019 34.8 6.4 74 491-604 74-147 (273)
150 TIGR03849 arch_ComA phosphosul 34.4 60 0.0013 35.4 4.9 21 490-510 100-120 (237)
151 cd06565 GH20_GcnA-like Glycosy 34.2 67 0.0015 35.9 5.5 72 489-576 59-131 (301)
152 PF15640 Tox-MPTase4: Metallop 33.4 48 0.001 32.6 3.6 24 487-510 19-42 (132)
153 cd02742 GH20_hexosaminidase Be 32.3 1E+02 0.0022 34.3 6.6 76 489-575 71-147 (303)
154 COG0113 HemB Delta-aminolevuli 31.8 7.8E+02 0.017 28.1 12.9 55 335-393 32-86 (330)
155 cd06544 GH18_narbonin Narbonin 31.7 70 0.0015 35.0 5.0 28 559-586 96-123 (253)
156 PRK10076 pyruvate formate lyas 31.3 1.1E+02 0.0024 32.6 6.3 20 489-508 192-211 (213)
157 COG3589 Uncharacterized conser 30.8 39 0.00085 38.4 2.9 23 490-512 49-71 (360)
158 cd04823 ALAD_PBGS_aspartate_ri 30.7 8.6E+02 0.019 27.8 14.8 92 478-604 87-180 (320)
159 cd02872 GH18_chitolectin_chito 29.7 89 0.0019 35.4 5.6 31 556-586 92-122 (362)
160 PF07071 DUF1341: Protein of u 29.3 98 0.0021 33.0 5.3 23 373-395 140-162 (218)
161 PF13860 FlgD_ig: FlgD Ig-like 29.2 2.3E+02 0.0049 25.2 7.1 57 218-276 13-77 (81)
162 PLN03059 beta-galactosidase; P 29.1 97 0.0021 39.5 6.1 21 489-509 97-117 (840)
163 PRK12858 tagatose 1,6-diphosph 28.2 5.4E+02 0.012 29.5 11.5 69 488-588 141-211 (340)
164 COG2730 BglC Endoglucanase [Ca 27.4 1.1E+02 0.0023 35.8 5.8 20 491-510 117-136 (407)
165 PF02679 ComA: (2R)-phospho-3- 26.6 60 0.0013 35.5 3.4 32 357-388 73-104 (244)
166 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.4 3.8E+02 0.0083 29.5 9.7 73 489-603 117-190 (275)
167 PF15260 FAM219A: Protein fami 25.5 28 0.0006 34.0 0.5 8 56-63 112-119 (125)
168 PF13380 CoA_binding_2: CoA bi 25.4 1.2E+02 0.0025 29.1 4.8 21 369-389 67-87 (116)
169 PF06051 DUF928: Domain of Unk 25.3 3E+02 0.0064 28.9 8.1 66 210-276 28-99 (189)
170 PRK08195 4-hyroxy-2-oxovalerat 25.3 3.6E+02 0.0078 30.8 9.4 41 562-603 144-185 (337)
171 cd03409 Chelatase_Class_II Cla 24.7 62 0.0013 29.3 2.7 26 369-394 46-71 (101)
172 cd04824 eu_ALAD_PBGS_cysteine_ 24.5 2.6E+02 0.0056 31.8 7.8 84 492-604 94-179 (320)
173 cd02878 GH18_zymocin_alpha Zym 24.3 1.3E+02 0.0028 34.2 5.6 29 557-585 88-116 (345)
174 cd07938 DRE_TIM_HMGL 3-hydroxy 24.1 4.9E+02 0.011 28.8 9.9 78 489-604 113-191 (274)
175 PF07894 DUF1669: Protein of u 23.9 60 0.0013 36.2 2.8 22 489-511 135-157 (284)
176 cd07939 DRE_TIM_NifV Streptomy 23.9 4.1E+02 0.0089 28.8 9.2 72 489-604 109-181 (259)
177 cd03174 DRE_TIM_metallolyase D 23.7 4.5E+02 0.0098 27.9 9.5 75 489-605 114-189 (265)
178 KOG0259 Tyrosine aminotransfer 23.7 59 0.0013 37.8 2.7 28 490-517 219-246 (447)
179 PRK13384 delta-aminolevulinic 23.7 2.6E+02 0.0056 31.9 7.6 83 492-604 101-185 (322)
180 COG3867 Arabinogalactan endo-1 23.6 2.1E+02 0.0045 32.5 6.7 27 489-515 103-129 (403)
181 cd05817 CBM20_DSP Dual-specifi 22.6 1.6E+02 0.0035 27.3 5.0 57 219-275 2-63 (100)
182 cd07940 DRE_TIM_IPMS 2-isoprop 22.2 4.6E+02 0.0099 28.6 9.2 72 489-604 113-185 (268)
183 PF01212 Beta_elim_lyase: Beta 22.1 78 0.0017 35.2 3.3 24 488-511 143-166 (290)
184 cd05816 CBM20_DPE2_repeat2 Dis 22.1 2.2E+02 0.0047 26.3 5.8 58 218-275 1-65 (99)
185 cd03413 CbiK_C Anaerobic cobal 21.6 75 0.0016 30.0 2.6 26 370-395 44-69 (103)
186 cd08560 GDPD_EcGlpQ_like_1 Gly 21.3 2.5E+02 0.0053 32.5 7.1 68 492-585 280-347 (356)
187 cd00609 AAT_like Aspartate ami 21.0 1.1E+02 0.0024 33.1 4.2 26 489-514 151-176 (350)
188 TIGR03217 4OH_2_O_val_ald 4-hy 21.0 4.9E+02 0.011 29.7 9.4 41 562-603 143-184 (333)
189 PF00682 HMGL-like: HMGL-like 21.0 3.9E+02 0.0084 28.2 8.2 73 489-605 107-180 (237)
190 cd07945 DRE_TIM_CMS Leptospira 20.8 5.4E+02 0.012 28.5 9.5 76 488-604 113-189 (280)
191 TIGR03602 streptolysinS bacter 20.7 43 0.00093 27.7 0.6 11 51-61 21-31 (56)
192 PLN02746 hydroxymethylglutaryl 20.6 5E+02 0.011 29.9 9.4 78 489-604 161-239 (347)
No 1
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.7e-189 Score=1684.07 Aligned_cols=776 Identities=79% Similarity=1.305 Sum_probs=736.3
Q ss_pred ccccccccccccccccCCCccccCcccceeEEEeCCEEEEecCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCC
Q 002787 67 SSSSSMPLELSTSASDQDDDLGDSLLYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKG 146 (881)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (881)
+..+.+.+|++..++.+++ +|++++|||||++||+|+++.++.+++||+|++|+|++++++|+|++..++|++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~----~~~~~~a~w~~~~t~~w~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (970)
T PLN02877 72 SASSFFTLELSVPTSLFQD----DLLYSRAYWVTESIIAWNVDVGDGSCFLYASKTAGLSVSDDGVEGYDLVVKLEEDSG 147 (970)
T ss_pred CccccccccccccccCCcC----ccccceEEEecCceEEEccCCCCceEEEEEcCCCCeeeccCceeccceEEEeecCCC
Confidence 3344456677777777777 899999999999999999887788899999999999999999999998889988778
Q ss_pred CCChhhhhcCCccccCceeeeCCCcchHHHHHhhhhc----cccccccccccccchhhhcccCCCCCCccEEeCCeeEEE
Q 002787 147 GLPANVIEKFPHIRDYKAFKVPAGSDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSYDGPLGALYAEETVSLY 222 (881)
Q Consensus 147 ~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~l~~ql~~----~~g~~~~~t~vq~~~~lD~ly~~~~~LGa~~~~~~v~F~ 222 (881)
+|+++|++|||||++|+||+++...+++++|||||+| ++|.++++|+||+||+||++|+|+++|||++.+++++|+
T Consensus 148 ~l~~~~~~~~phl~~~~a~~~~~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~~LGA~~~~~g~~F~ 227 (970)
T PLN02877 148 GLPPNVIEKFPHIRGYRAFKVPSTVDVKDLLKCQLAVAAFDADGKCTDATGLQLPGVLDDLFAYDGPLGAHFSKDAVSLY 227 (970)
T ss_pred CCCHhHHhcCccccCCcceeCCccccHHHHhhcceEEEEECCCCCEEccccccchhhhhhhccCCCCCcceEecCCEEEE
Confidence 9999999999999999999999888999999999997 789999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEeeCCCCCCCceEEecccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceeeecCccccccccCCC
Q 002787 223 LWAPTAQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR 302 (881)
Q Consensus 223 vWAPtA~~V~L~ly~~~~~~~~~~~~~M~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA~~ls~ng~ 302 (881)
||||+|++|+|+||++.++..+...++|++.+|||++++++.++|.+|+|+|++++|.++++++++++||||++++.||.
T Consensus 228 VWAPtA~~V~L~lyd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~als~ng~ 307 (970)
T PLN02877 228 LWAPTAQAVSLCLYDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGCYYVYEVSVYHPSTGKVETCYANDPYARGLSADGR 307 (970)
T ss_pred EECCCCCEEEEEEecCCCCccceEEecccCCCCEEEEEeccCCCCCeeEEEEeecccCCCcccccccCCccceEEecCCC
Confidence 99999999999999876544455678898889999999999999999999999999999988888999999999999999
Q ss_pred cceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCC
Q 002787 303 RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGL 382 (881)
Q Consensus 303 ~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGv 382 (881)
+|+++|+++..++|++|+.....+|.+.+++|+||||+||||||+.+++++..+||||+||+|+++++|+||++|++|||
T Consensus 308 ~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGV 387 (970)
T PLN02877 308 RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGL 387 (970)
T ss_pred ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCC
Confidence 99999999989999999875334676778999999999999999999889999999999999999999999999999999
Q ss_pred cEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCC
Q 002787 383 THVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDG 462 (881)
Q Consensus 383 T~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~ 462 (881)
|||||||+|||++++|++.+++.+ +++.|..++++|+++|++++++++.+.
T Consensus 388 ThVeLLPvfDf~tvdE~~~~~~~~-----------------------------~~~~l~~~~~~s~~~q~~v~~~~~~d~ 438 (970)
T PLN02877 388 THVHLLPTFQFGSVDDEKENWKCV-----------------------------DPKELEKLPPDSEEQQAAITAIQDDDG 438 (970)
T ss_pred CEEEeCCccccCCccccccccccc-----------------------------ccchhccccccchhhhhcccccccCCC
Confidence 999999999999999988777655 456788999999999999999999999
Q ss_pred CCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCC
Q 002787 463 YNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDG 542 (881)
Q Consensus 463 ~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G 542 (881)
+||||||.|||+||+||+++|+++.||+|||+||++||++||+||||||||||++.|++...++|++++|+||+|.+.+|
T Consensus 439 yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G 518 (970)
T PLN02877 439 YNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDG 518 (970)
T ss_pred CCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred ccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccC
Q 002787 543 FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGW 622 (881)
Q Consensus 543 ~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~W 622 (881)
.+.+++||+++++||+||+|||+|++++|++||||||||||+|+||++++|++++++|++++++.++++|+++|||||+|
T Consensus 519 ~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW 598 (970)
T PLN02877 519 FIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGW 598 (970)
T ss_pred CcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCccccccCCCCcceecchHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHH
Q 002787 623 DFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQ 702 (881)
Q Consensus 623 d~gev~~~~~~~~a~Q~n~~gtgig~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~ 702 (881)
++++++++.++++|+|.||+|++||+||||+|||||||++|+++..|||++|++.+||+..+|....++..|++..|.|+
T Consensus 599 ~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~ 678 (970)
T PLN02877 599 DFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQ 678 (970)
T ss_pred CCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999988887788889999999999
Q ss_pred hhhcccchhhhccccCCcccccCcccccCCCCccccCCCCccEEeeeccccchhhhhhcCC-------------------
Q 002787 703 VGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK------------------- 763 (881)
Q Consensus 703 ~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~~k------------------- 763 (881)
.||+|||++|.|++.+|+.++|+++..|+|+|++|+.+|.++||||++|||+||||.++++
T Consensus 679 ~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~a 758 (970)
T PLN02877 679 VGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPMEISVDERCRINHLATS 758 (970)
T ss_pred HHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999679999999999999999999999999999999765
Q ss_pred ------CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHH
Q 002787 764 ------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHIL 837 (881)
Q Consensus 764 ------GiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~ 837 (881)
||||||+|+|++|||++++||||||||||++||++++||||+||||+++|+++|++|+++|+||+++|++++|.
T Consensus 759 iv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~ 838 (970)
T PLN02877 759 IIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHIL 838 (970)
T ss_pred HHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccCCHHHHhccccccccCC
Q 002787 838 AALENFSDVLRIRYSSPLFRLRTANAIQVRRRHMSCLD 875 (881)
Q Consensus 838 ~~~~~~k~Ll~lRkssp~lrlgt~~~I~~~v~f~n~~~ 875 (881)
.++++||+||+|||+||+|||+++++|++||+|+|+.+
T Consensus 839 ~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~ 876 (970)
T PLN02877 839 AALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGP 876 (970)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCC
Confidence 99999999999999999999999999999999999854
No 2
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=2e-181 Score=1618.79 Aligned_cols=767 Identities=50% Similarity=0.852 Sum_probs=708.4
Q ss_pred CcccceeEEEeCCEEEEecCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCCCCChhhhhcCCccccCceeeeC-
Q 002787 90 SLLYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKGGLPANVIEKFPHIRDYKAFKVP- 168 (881)
Q Consensus 90 ~~~~~~a~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~- 168 (881)
||++++|||||++||+|++..++.+++||+|++|+|+++++++.|++ .|+|++.+++|+++|++|||||++|+||+++
T Consensus 1 d~~~~~a~w~~~~t~~w~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~phl~~~~a~~~~~ 79 (898)
T TIGR02103 1 DLAGARAHWVDADTILWNVAENAPSVTLYYSPSAKLKFDSDGVFGGD-RIKLTPSSGGLSQDLKMKFPHLASYKAFKLPA 79 (898)
T ss_pred CCccceEEEecCceEEEecCCCccEEEEEECCCCCeeeccCcccccc-eEEeeccCCCCCHHHHhhCcccccCcceecCc
Confidence 67899999999999999988788999999999999999999988887 7889887789999999999999999999999
Q ss_pred CCcchHHHHHhhhhc----cccccccccccccchhhhcccCCCCC---CccEEeCCeeEEEEEcCCCCeEEEEEeeCCCC
Q 002787 169 AGSDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSYDGP---LGALYAEETVSLYLWAPTAQSVSACIYRDPLG 241 (881)
Q Consensus 169 ~~~~~~~~l~~ql~~----~~g~~~~~t~vq~~~~lD~ly~~~~~---LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~ 241 (881)
...++++||||||+| ++|.++++|+||+||+||++|+|+++ |||++.+++++|+||||+|++|+|++|+....
T Consensus 80 ~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~ 159 (898)
T TIGR02103 80 DDANLRDLLKGQLVVVAYDANGILISATGVQTAGVLDALYAYAGPALSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKK 159 (898)
T ss_pred chhHHHHHhhccEEEEEECCCCCEeeecccccchhhhHHhhcCCCCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCC
Confidence 677899999999997 78999999999999999999999887 99999999999999999999999999986432
Q ss_pred CCCceEEecc-c-CCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceeeecCccccccccCCCcceEeeCCCCCCCCCcc
Q 002787 242 GNPLEVVQLK-E-NDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGW 319 (881)
Q Consensus 242 ~~~~~~~~M~-~-~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA~~ls~ng~~S~vvDl~~~~~~P~~W 319 (881)
....++|. . .+|+|++++++.++|.+|+|+|++++|.+|++++++++||||++++.++.+|+|+|+++..++|++|
T Consensus 160 --~~~~~~M~~~~~~GVWsv~v~g~~~G~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p~~W 237 (898)
T TIGR02103 160 --VETTLPMTRDSTSGVWSAEGGSSWKGAYYRYEVTVYHPSTGKVETYLVTDPYSVSLSANSEYSQVVDLNDPALKPEGW 237 (898)
T ss_pred --ccceEeCccCCCCCEEEEEECcCCCCCEeEEEEEEecCCCCeECCeEEeCcCcceEcCCCCCeEEeCCccccCCCcch
Confidence 34678893 3 6899999999999999999999999999998888899999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcc
Q 002787 320 DKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDR 399 (881)
Q Consensus 320 ~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~ 399 (881)
+.....+|.+.+++|+||||+||||||..++++++.+||||+||+|+++.+++||++|++||||||||||||||++|+|+
T Consensus 238 ~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~ 317 (898)
T TIGR02103 238 DALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEE 317 (898)
T ss_pred hhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccc
Confidence 87522245556899999999999999999989988999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCC
Q 002787 400 KENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSY 479 (881)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sY 479 (881)
+.++..++++...+| ..++.+. .|............++.+.+.++++|+++.++++.+.|||||||.|||+|||||
T Consensus 318 ~~~~~~~~~~~~~l~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSY 393 (898)
T TIGR02103 318 KEKVADIQQPFSKLC-ELNPDSK---SSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSY 393 (898)
T ss_pred cccccccccchhhhh-ccccccc---cccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhh
Confidence 877766533221111 1112221 344433333455778888899999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChH
Q 002787 480 ASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYM 559 (881)
Q Consensus 480 gt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~m 559 (881)
+++|+++.||+|||+||++||++||+||||||||||+.+|+.. .++|++++|+||+|++.+|.+.+++||+|+++||+|
T Consensus 394 atdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~-~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~ 472 (898)
T TIGR02103 394 ATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPND-RSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRM 472 (898)
T ss_pred ccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccC-cccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHH
Confidence 9999999999999999999999999999999999999988765 488999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccc
Q 002787 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639 (881)
Q Consensus 560 v~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~ 639 (881)
|+++|+|++++|+++|||||||||+|+|+++++|++++++|++++ +++|||||+|++++++.+.++.+++|.
T Consensus 473 Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~--------pdi~l~GEgW~~~~~~~~~~~~~a~~~ 544 (898)
T TIGR02103 473 MAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALT--------PEIYFYGEGWDFGEVANNRRFINATQL 544 (898)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhC--------CCEEEEecCCCcccccchhhhhhhhcc
Confidence 999999999999999999999999999999999999999999998 469999999999999888899999999
Q ss_pred cCCCCcceecchHHHHHhcCCCCCCC----CcccccccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhcc
Q 002787 640 NLSGTGIGSFNDRIRDAMLGGSPFGP----PLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLT 715 (881)
Q Consensus 640 n~~gtgig~fnDr~Rdavrgg~~F~~----~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~ 715 (881)
||+|++||+||||+|||||||++|+. +..|||++|++.+||+. ++....++..|++.+|+|+.||+|||++|.|+
T Consensus 545 n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~-~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~ 623 (898)
T TIGR02103 545 NLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAH-HGLDAASKDGALHLADLTRLGMAGNLKDFVLT 623 (898)
T ss_pred ccCCCCeEEeccchhhHhcCCCccccccccccCcceecCcccCCccc-ccccchhhhhhhhhHHHHHHhhcCcccccccc
Confidence 99999999999999999999999986 57899999999999977 56666778889999999999999999999999
Q ss_pred ccCCcccccCcccccCCCCccccCCCCccEEeeeccccchhhhhhcCC-------------------------CeeeEec
Q 002787 716 NSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK-------------------------GIPFFHC 770 (881)
Q Consensus 716 ~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~~k-------------------------GiPfiy~ 770 (881)
+.+|+.++|+++ +|+|+|++|+.+|.++||||++|||+||||.++++ ||||||+
T Consensus 624 ~~~g~~~~g~~~-~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~ha 702 (898)
T TIGR02103 624 DHEGKVVTGEEL-DYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHA 702 (898)
T ss_pred cccccccccccc-ccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhc
Confidence 999999999998 89999999999999999999999999999999876 9999999
Q ss_pred CccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 002787 771 GDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIR 850 (881)
Q Consensus 771 GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lR 850 (881)
|+|++|||+|++|||+||||||++||++++||||+||||++||+.+|+.|+++|+||+++|++++|.+++++||+||+||
T Consensus 703 G~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lR 782 (898)
T TIGR02103 703 GSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIR 782 (898)
T ss_pred chHhhcCCCCCCCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCHHHHhccccccccC
Q 002787 851 YSSPLFRLRTANAIQVRRRHMSCL 874 (881)
Q Consensus 851 kssp~lrlgt~~~I~~~v~f~n~~ 874 (881)
|+||+|||+++++|++||+|+|+.
T Consensus 783 ks~p~Frl~t~~~I~~~v~F~~~g 806 (898)
T TIGR02103 783 SSSPLFRLDTAAEVMKRVDFRNTG 806 (898)
T ss_pred hCCcccCCCCHHHHHhheEEeccC
Confidence 999999999999999999999975
No 3
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=5.7e-104 Score=964.58 Aligned_cols=561 Identities=29% Similarity=0.516 Sum_probs=442.7
Q ss_pred EEEeeccCCCCChhhhhcCCccccCceeeeCCCcchHHHHHhhhhccccccccccccccchhhhcccCCCCCCccEEeCC
Q 002787 138 EIELQEDKGGLPANVIEKFPHIRDYKAFKVPAGSDAKLLLKCQLAVADRKCSDATGLQLPGILDELFSYDGPLGALYAEE 217 (881)
Q Consensus 138 ~~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~l~~ql~~~~g~~~~~t~vq~~~~lD~ly~~~~~LGa~~~~~ 217 (881)
.|+|.. ..++..++.+|++.. .+|.|.-.. + .+...+++| +||++|+|+++|||++.++
T Consensus 268 ~~~~~~--~~~~~~~~~~~~~~~--~~~~v~~~~--------~------~~~~~~~~~---~~d~~y~y~g~LGa~~~~~ 326 (1111)
T TIGR02102 268 DVTIDT--DKKTVTVKGDFNLDK--SPYTVSYNE--------V------SVPTKQSWR---LKDEMYAYDGKLGAQLHED 326 (1111)
T ss_pred eeeecC--CcceEEeeccCCccc--CCEEEEecc--------c------cchhhcchh---hhhhhhccCCCCCCEEecC
Confidence 355554 567777888888873 345554210 0 012233444 7999999999999999866
Q ss_pred e-eEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCC------CCCCcEEEEEEEeecCCCcccceeee
Q 002787 218 T-VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPK------SWEGCYYVYEVSVYHPSALQIEKCYA 289 (881)
Q Consensus 218 ~-v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~------~~~G~~Y~Y~V~~~~p~~g~~e~~~v 289 (881)
+ ++|+||||+|++|+|+||+..........++| +..+|||++++++ ++.|.+|+|+|+.. .++.++
T Consensus 327 g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~------~~~~~~ 400 (1111)
T TIGR02102 327 GTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRG------GDKVLA 400 (1111)
T ss_pred CCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECC------CceEEE
Confidence 5 89999999999999999986433233457899 6688999999984 57899999999852 246789
Q ss_pred cCcccccccc-C---------CCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCC---C
Q 002787 290 NDPYARGLSS-D---------GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPD---F 356 (881)
Q Consensus 290 tDPYA~~ls~-n---------g~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~---~ 356 (881)
+||||++++. + +.+|.|||+.. +.|.+|+.. .+|...+++|+||||+|||+||. +.+++.. .
T Consensus 401 ~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~--~~p~~~~~~--~~~~~~~~~d~vIYElHVrdFt~-d~~~~~~~~~~ 475 (1111)
T TIGR02102 401 LDPYAKSLAAWNDATSDDQIKVAKAAFVDPSS--LGPQELDFA--KIENFKKREDAIIYEAHVRDFTS-DPAIAGDLTAQ 475 (1111)
T ss_pred eChhheEEeccCcccccccCCCCceEEEcCcc--cCccccccc--cccccCCccceEEEEEechhhCc-CCCCCcccccC
Confidence 9999999986 4 25788898754 667777654 45666788999999999999995 4444443 4
Q ss_pred CcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchh
Q 002787 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (881)
Q Consensus 357 rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (881)
+|+|+||+++ |+||++||||||||||||++++++|........
T Consensus 476 ~Gtf~gl~ek-------LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~------------------------------ 518 (1111)
T TIGR02102 476 FGTFAAFVEK-------LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERML------------------------------ 518 (1111)
T ss_pred CcCHHHHHHh-------HHHHHHcCCCEEEEcCccccccccccccccccc------------------------------
Confidence 7999999875 999999999999999999999887643211000
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCC-chHHHHHHHHHHHhhcCCEEEEEeecccc
Q 002787 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGS-CRTIEFRRMVQALNHIGLHVVLDVVYNHL 515 (881)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~-~ri~Efr~mV~alH~~GirVIlDVVyNHt 515 (881)
.+. ...+.+||||+|.+||+|+++||++|..+ .|++|||+||++||++||+||||||||||
T Consensus 519 -----~~~-------------~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt 580 (1111)
T TIGR02102 519 -----DYA-------------SSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHT 580 (1111)
T ss_pred -----ccc-------------ccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 000 01235789999999999999999988644 79999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHH
Q 002787 516 QGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMK 595 (881)
Q Consensus 516 ~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~ 595 (881)
+.. +.|++++|+||++.+.+|...++.||++++++|+||+++|+|++++|+++|||||||||+|++++.++|+.
T Consensus 581 ~~~------~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~ 654 (1111)
T TIGR02102 581 AKV------YIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEI 654 (1111)
T ss_pred ccc------ccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHH
Confidence 753 45888999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccccCCCC-cceecchHHHHHhcCCCCCCCCcccccccc
Q 002787 596 AKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT-GIGSFNDRIRDAMLGGSPFGPPLQQGFVTG 674 (881)
Q Consensus 596 ~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~gt-gig~fnDr~Rdavrgg~~F~~~~~qGf~~g 674 (881)
++.++++++ ++++||||+|++...........+.|.++..+ +||.|||++|++|||+..+. ..+||++|
T Consensus 655 ~~~~l~~~d--------P~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~--~~~gfi~G 724 (1111)
T TIGR02102 655 AYKEAKAIN--------PNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNE--GQPAFITG 724 (1111)
T ss_pred HHHHHHHhC--------cCEEEEEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccc--cccccccC
Confidence 999999998 46999999999732211222334566666543 69999999999999854332 34688877
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccccCcccccCCCCccc-cCCCCccEEeeecccc
Q 002787 675 LLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAY-ALCPTETISYVSAHDN 753 (881)
Q Consensus 675 ~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~y-a~~P~~~INYVs~HDn 753 (881)
.. +... .+..++ .|+|..| +.+|.++||||+||||
T Consensus 725 ~~--------~~~~-----------~l~~~i-------------------------~g~~~~~~~~~P~~~VnYV~aHDn 760 (1111)
T TIGR02102 725 GA--------RNVQ-----------GIFKNI-------------------------KAQPHNFEADSPGDVVQYIAAHDN 760 (1111)
T ss_pred Cc--------ccHH-----------HHHHhh-------------------------cCCccccccCCcccEEEEEecCCC
Confidence 32 1111 111111 1223334 3689999999999999
Q ss_pred chhhhhhcCC-----------------------------CeeeEecCccccccCCCC-----------------------
Q 002787 754 ETLFDVVSLK-----------------------------GIPFFHCGDEILRSKSLD----------------------- 781 (881)
Q Consensus 754 ~tL~D~l~~k-----------------------------GiPfiy~GdE~grSksgd----------------------- 781 (881)
+||||+++++ ||||||+|+|++|||+++
T Consensus 761 ~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~ 840 (1111)
T TIGR02102 761 LTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDV 840 (1111)
T ss_pred CchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCccccccccccccccccccccccc
Confidence 9999998752 999999999999999997
Q ss_pred -----------CCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 002787 782 -----------RDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIR 850 (881)
Q Consensus 782 -----------~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lR 850 (881)
+|||+|+||+|++||++.++ ..+|+. +.+++++||+||+||
T Consensus 841 ~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~------------~~~~~~----------------~~~~~~y~~~LI~lR 892 (1111)
T TIGR02102 841 DGNPFRYPYFIHDSYDSSDAINRFDWEKATD------------ADAYPI----------------NNKTRDYTAGLIELR 892 (1111)
T ss_pred ccccccccccccccccCCCccceeccccccc------------ccccch----------------hHHHHHHHHHHHHHH
Confidence 89999999999999997543 334554 247899999999999
Q ss_pred hcCcccccCCHHHHhcccccccc
Q 002787 851 YSSPLFRLRTANAIQVRRRHMSC 873 (881)
Q Consensus 851 kssp~lrlgt~~~I~~~v~f~n~ 873 (881)
|+||+||++++++|.++|+|+++
T Consensus 893 k~~~~fr~~~~~~i~~~v~~~~~ 915 (1111)
T TIGR02102 893 RSTDAFRLGSKALVDRKVTLITI 915 (1111)
T ss_pred hcCccccccchhhhcCcEEEECC
Confidence 99999999999999999999876
No 4
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=2.1e-91 Score=826.18 Aligned_cols=515 Identities=39% Similarity=0.738 Sum_probs=414.7
Q ss_pred hhcccCCCCCCccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeec
Q 002787 200 LDELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYH 278 (881)
Q Consensus 200 lD~ly~~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~ 278 (881)
||+.|+|+++|||++.+++++|+||||+|++|+|++|+++.+..+.+.++| +..+|+|++.+++...|.+|+|+|+...
T Consensus 2 ~~~~~~~~~~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~ 81 (605)
T TIGR02104 2 FDDKFYYDGELGAVYTPEKTVFRVWAPTATEVELLLYKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCING 81 (605)
T ss_pred cccccCCCCCCccEEECCeeEEEEECCCCCEEEEEEEcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCC
Confidence 799999999999999999999999999999999999987654344568899 5678999999999999999999998531
Q ss_pred CCCcccceeeecCccccccccCCCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCc
Q 002787 279 PSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRG 358 (881)
Q Consensus 279 p~~g~~e~~~vtDPYA~~ls~ng~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG 358 (881)
....++||||++++.++..|.|+|++. +++.+|... ..|...+++++||||+|||+||..+.+.. ..+|
T Consensus 82 ------~~~~~~DPya~~~~~~~~~s~v~d~~~--~~~~~w~~~--~~~~~~~~~~~vIYElhv~~ft~~~~~~~-~~~G 150 (605)
T TIGR02104 82 ------KWRETVDPYAKAVTVNGKRGAVIDLER--TNPEGWEKD--HRPRLENPEDAIIYELHIRDFSIHENSGV-KNKG 150 (605)
T ss_pred ------CeEEEcCCCcceeccCCCcEEEEcccc--cCccCcccc--cCCCCCChhHcEEEEEecchhccCCCCCc-CCCC
Confidence 235799999999999999999999864 567889874 33555678999999999999998665543 4599
Q ss_pred ccccccccc----hhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccc
Q 002787 359 GYLAFTLQN----SAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSF 434 (881)
Q Consensus 359 ~y~g~tek~----~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (881)
||+|++|+. .+.+++|+||++|||||||||||+++.++++...
T Consensus 151 ~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~--------------------------------- 197 (605)
T TIGR02104 151 KYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDP--------------------------------- 197 (605)
T ss_pred ceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccC---------------------------------
Confidence 999999973 2456899999999999999999999987543210
Q ss_pred hhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCC-CchHHHHHHHHHHHhhcCCEEEEEeecc
Q 002787 435 ADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNG-SCRTIEFRRMVQALNHIGLHVVLDVVYN 513 (881)
Q Consensus 435 ~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg-~~ri~Efr~mV~alH~~GirVIlDVVyN 513 (881)
...+||||+|.+||+|+++||++|.. ..|++|||+||++||++||+||||||||
T Consensus 198 -------------------------~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~N 252 (605)
T TIGR02104 198 -------------------------NNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYN 252 (605)
T ss_pred -------------------------CCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 12478999999999999999998754 4689999999999999999999999999
Q ss_pred ccCCCCCCCCCCccCCCCCCCceecCCCCcccc-CCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHH
Q 002787 514 HLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEH-STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKST 592 (881)
Q Consensus 514 Ht~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~-stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~ 592 (881)
||++. ..+.+++++|.||++.+..|.+.+ +.|+++++++|+||+++|+|++++|+++|||||||||+|++++.++
T Consensus 253 H~~~~----~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~ 328 (605)
T TIGR02104 253 HTYSR----EESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIET 328 (605)
T ss_pred CccCC----CCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHH
Confidence 99753 234688889999998888887765 4577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccccCCC-CcceecchHHHHHhcCCCCCCCCccccc
Q 002787 593 MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG-TGIGSFNDRIRDAMLGGSPFGPPLQQGF 671 (881)
Q Consensus 593 ~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~g-tgig~fnDr~Rdavrgg~~F~~~~~qGf 671 (881)
|++++++|+++. ++++||||+|+.+... .....+.+.+..+ .+++.|||++|++|++ ..|+. ..+||
T Consensus 329 ~~~~~~~~~~~~--------p~~~ligE~w~~~~~~--~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~-~~~~~-~~~~f 396 (605)
T TIGR02104 329 MNEIRKALNKID--------PNILLYGEGWDLGTPL--PPEQKATKANAYQMPGIAFFNDEFRDALKG-SVFHL-KKKGF 396 (605)
T ss_pred HHHHHHHHHhhC--------CCeEEEEccCCCCCCc--chhhhhhhhccCCCCceEEECCcchhhhcC-Ccccc-ccCce
Confidence 999999999987 5699999999876311 0000111112221 4789999999999997 45543 23577
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccccCcccccCCCCccccCCCCccEEeeecc
Q 002787 672 VTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAH 751 (881)
Q Consensus 672 ~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~H 751 (881)
+.|.. +... .+...+.|+. .+.+.. .....|.++||||+||
T Consensus 397 ~~g~~--------~~~~-----------~l~~~l~~~~-------------------~~~~~~-~~~~~p~~~vnyl~~H 437 (605)
T TIGR02104 397 VSGNP--------GTEE-----------TVKKGILGSI-------------------ELDAVK-PSALDPSQSINYVECH 437 (605)
T ss_pred ecCCC--------CcHH-----------HHHhheeCCh-------------------hhcccc-cccCChhheEEEEEec
Confidence 76621 1111 1111222221 111111 1235889999999999
Q ss_pred ccchhhhhhcCC------------------------CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 002787 752 DNETLFDVVSLK------------------------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGL 807 (881)
Q Consensus 752 Dn~tL~D~l~~k------------------------GiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Gl 807 (881)
||.||+|++.+. ||||||||||++|++.++.|+|+++|.+|+++|+....
T Consensus 438 D~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~------ 511 (605)
T TIGR02104 438 DNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKAT------ 511 (605)
T ss_pred CCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCcccccc------
Confidence 999999986531 99999999999999999999999999999999985211
Q ss_pred CCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCCHHHHhccccccc
Q 002787 808 PPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQVRRRHMS 872 (881)
Q Consensus 808 p~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lRkssp~lrlgt~~~I~~~v~f~n 872 (881)
..+++++||+||+|||++|+|+.++..+|..++.|..
T Consensus 512 ----------------------------~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~ 548 (605)
T TIGR02104 512 ----------------------------FKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLP 548 (605)
T ss_pred ----------------------------chHHHHHHHHHHHHHhhCccccCCChhhhcceeEEcc
Confidence 1258999999999999999999999999988887765
No 5
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.6e-89 Score=810.96 Aligned_cols=492 Identities=26% Similarity=0.365 Sum_probs=378.6
Q ss_pred CCCCCccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEe-ecCCCcc
Q 002787 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (881)
Q Consensus 206 ~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~-~~p~~g~ 283 (881)
...+|||++.+++|+|+||||+|++|+|++|++... ...++| +..+|+|++.+++..+|++|.|+|+. +.|..|.
T Consensus 8 ~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~---~~~~~m~~~~~gvW~~~v~~~~~G~~Y~yrv~g~~~p~~g~ 84 (658)
T PRK03705 8 KPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENGQ---EQRYDLPARSGDIWHGYLPGARPGLRYGYRVHGPWQPAQGH 84 (658)
T ss_pred CCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCCC---eeeEeeeeccCCEEEEEECCCCCCCEEEEEEccccCcccCc
Confidence 466899999999999999999999999999986432 246788 56789999999999999999999984 4565553
Q ss_pred c--ceeeecCccccccccCC----------------------CcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEE
Q 002787 284 I--EKCYANDPYARGLSSDG----------------------RRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYE 339 (881)
Q Consensus 284 ~--e~~~vtDPYA~~ls~ng----------------------~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYE 339 (881)
. ...+++||||++++.+. ..+.|+| .+++|... ..|. .+++++||||
T Consensus 85 ~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d------~~~~W~~~--~~p~-~~~~~~vIYE 155 (658)
T PRK03705 85 RFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD------DHYDWEDD--APPR-TPWGSTVIYE 155 (658)
T ss_pred ccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec------CCCCCCCC--CCCC-CCccccEEEE
Confidence 2 34679999999997531 1233333 35678764 3443 4789999999
Q ss_pred EEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCC
Q 002787 340 LHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNT 419 (881)
Q Consensus 340 lHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~ 419 (881)
+|||+||..+++++..++|||+|++++ .+|+|||+||||||||||||++.+.++...
T Consensus 156 ~hvr~ft~~~~~~~~~~~Gtf~g~~~~-----~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~------------------ 212 (658)
T PRK03705 156 AHVRGLTYLHPEIPVEIRGTYAALGHP-----VMIAYLKQLGITALELLPVAQFASEPRLQR------------------ 212 (658)
T ss_pred EehhhhcccCCCCCccccccHHHhhcc-----cchHHHHHcCCCEEEecCcccCCCcccccc------------------
Confidence 999999987777788899999999874 348888999999999999999975221000
Q ss_pred CcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHH
Q 002787 420 FSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQAL 499 (881)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~al 499 (881)
....+||||+|.+||+|+++||++++ .|++|||+||++|
T Consensus 213 ---------------------------------------~g~~~ywGYd~~~yfa~d~~ygt~~~--~~~~efk~LV~~~ 251 (658)
T PRK03705 213 ---------------------------------------MGLSNYWGYNPLAMFALDPAYASGPE--TALDEFRDAVKAL 251 (658)
T ss_pred ---------------------------------------cccccccCcccccccccccccCCCCc--chHHHHHHHHHHH
Confidence 01136899999999999999999765 6899999999999
Q ss_pred hhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCC-CCCCCCCCChHHHHHHHHHHHHHHHhCCce
Q 002787 500 NHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHST-CMNNTASEHYMVERLIIDDLLCWAVNYKVD 578 (881)
Q Consensus 500 H~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~st-c~~d~a~e~~mv~k~i~Dsl~~W~~eygID 578 (881)
|++||+||||||||||+..+.......+..+.+.+|++.+.+|.+.+++ |.+++|++|+||+++|+|++++|+++||||
T Consensus 252 H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVD 331 (658)
T PRK03705 252 HKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVD 331 (658)
T ss_pred HHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999864221112234555555666677778777655 667899999999999999999999999999
Q ss_pred EEEEcCCCcccHH--HHHHHHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccccCCCCcceecchHHHHH
Q 002787 579 GFRFDLMGHIMKS--TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDA 656 (881)
Q Consensus 579 GFRfDlm~h~~~~--~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~gtgig~fnDr~Rda 656 (881)
|||||+|+++.+. ++.. ...++++.. ++++ ++++||||+|+.+. .++|...+..+|+.|||+|||+
T Consensus 332 GFRfD~a~~l~~~~~~~~~-~~~~~ai~~--d~vl-~~~~ligE~Wd~~~--------~~~~~g~~~~~~~~~Nd~fRd~ 399 (658)
T PRK03705 332 GFRFDLATVLGRTPEFRQD-APLFTAIQN--DPVL-SQVKLIAEPWDIGP--------GGYQVGNFPPPFAEWNDHFRDA 399 (658)
T ss_pred EEEEEcHhhhCcCcccchh-hHHHHHHhh--Cccc-cceEEEEecccCCC--------ChhhhcCCCcceEEEchHHHHH
Confidence 9999999999743 3322 223444442 2343 68999999999764 1334444456899999999999
Q ss_pred hcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccccCcccccCCCCcc
Q 002787 657 MLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVA 736 (881)
Q Consensus 657 vrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ 736 (881)
||+ |+.+ ..+...++... +.|.. . .|. .
T Consensus 400 ir~-----------f~~~--------~~~~~~~~~~~-----------l~gs~-----------------~-~~~----~ 427 (658)
T PRK03705 400 ARR-----------FWLH--------GDLPLGEFAGR-----------FAASS-----------------D-VFK----R 427 (658)
T ss_pred HHH-----------HHcc--------CCCcHHHHHHH-----------Hhcch-----------------h-hcc----c
Confidence 997 3222 01111111111 22221 1 121 1
Q ss_pred ccCCCCccEEeeeccccchhhhhhcCC-----------------------------------------------------
Q 002787 737 YALCPTETISYVSAHDNETLFDVVSLK----------------------------------------------------- 763 (881)
Q Consensus 737 ya~~P~~~INYVs~HDn~tL~D~l~~k----------------------------------------------------- 763 (881)
....|.++||||++|||+||+|++++.
T Consensus 428 ~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sq 507 (658)
T PRK03705 428 NGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQ 507 (658)
T ss_pred cCCCCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 125789999999999999999977431
Q ss_pred CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHH
Q 002787 764 GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENF 843 (881)
Q Consensus 764 GiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~ 843 (881)
||||||||||++|||.|++|+||++|.+|+++|+... .++++++
T Consensus 508 G~P~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~~------------------------------------~~l~~f~ 551 (658)
T PRK03705 508 GTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQAD------------------------------------RGLTAFT 551 (658)
T ss_pred CchHHHhhHHhccCCCCCCCCccCCCCccccccchhh------------------------------------hHHHHHH
Confidence 9999999999999999999999999999999998510 2689999
Q ss_pred HHHHHHHhcCcccccCCH-HHHhcccccccc
Q 002787 844 SDVLRIRYSSPLFRLRTA-NAIQVRRRHMSC 873 (881)
Q Consensus 844 k~Ll~lRkssp~lrlgt~-~~I~~~v~f~n~ 873 (881)
|+||+|||+||+||..++ +++.+.|+|.+.
T Consensus 552 k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~ 582 (658)
T PRK03705 552 AALIHLRQRIPALTQNRWWEEGDGNVRWLNR 582 (658)
T ss_pred HHHHHHHHhChhhcccccccCCCCCeEEeCC
Confidence 999999999999999998 778888888653
No 6
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-89 Score=805.23 Aligned_cols=498 Identities=31% Similarity=0.525 Sum_probs=394.0
Q ss_pred CCCCCccEE---eCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEecc-cCCCEEEEEcCCCCCCcEEEEEEEe-ecCC
Q 002787 206 YDGPLGALY---AEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK-ENDGVWSIKGPKSWEGCYYVYEVSV-YHPS 280 (881)
Q Consensus 206 ~~~~LGa~~---~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M~-~~~GvWsv~v~~~~~G~~Y~Y~V~~-~~p~ 280 (881)
.+.|||+++ .+.++.|++|+..|++|.|++|+.....++.+.++++ +.+.+|++.+|+...|+.|.|++.. ++|.
T Consensus 16 ~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g~~y~yr~~g~~~~~ 95 (697)
T COG1523 16 KPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPGQVYGYRVHGPYDPE 95 (697)
T ss_pred CcccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCceeeEEEEecCCCcCCc
Confidence 456899998 4489999999999999999999875433333347784 4566999999999999999999986 6666
Q ss_pred Cccc--ceeeecCccccccccCCCcc------e-----EeeCC----CC-------CCCC-CcccccccCCCCCCCCCCc
Q 002787 281 ALQI--EKCYANDPYARGLSSDGRRT------L-----LVNLD----SD-------TLKP-EGWDKLVYEKPDILSFSDI 335 (881)
Q Consensus 281 ~g~~--e~~~vtDPYA~~ls~ng~~S------~-----vvDl~----~~-------~~~P-~~W~~~~~~~P~~~~~~d~ 335 (881)
.|+. ......||||+.+..+-..+ . +-++. .. ...+ ++|... +|...+++++
T Consensus 96 ~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~---~~~~~p~~~~ 172 (697)
T COG1523 96 EGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWEND---KPPRIPWEDT 172 (697)
T ss_pred cCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccC---CCCCCCccce
Confidence 5532 34578999999997543221 0 01110 00 0112 578764 3444579999
Q ss_pred eEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCcccc
Q 002787 336 SIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFF 415 (881)
Q Consensus 336 vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~ 415 (881)
||||+|||+||..++.+++..||||+|++++.. |+|||+||||||+||||+++...++..
T Consensus 173 vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~-----i~yLk~LGvtaVeLLPV~~~~~~~~l~--------------- 232 (697)
T COG1523 173 VIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVI-----IDYLKDLGVTAVELLPVFDFYDEPHLD--------------- 232 (697)
T ss_pred EEEEeeecccccCCCCCchhhccceehhccccH-----HHHHHHhCCceEEEecceEEecccccc---------------
Confidence 999999999999889999999999999999732 777777899999999999998754421
Q ss_pred ccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHH
Q 002787 416 GQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495 (881)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~m 495 (881)
.....+||||||.+||||+++|+++|+...||+|||+|
T Consensus 233 ------------------------------------------~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~m 270 (697)
T COG1523 233 ------------------------------------------KSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDM 270 (697)
T ss_pred ------------------------------------------ccccccccCCCcccccCCCccccCCCCcchHHHHHHHH
Confidence 01235999999999999999999999944799999999
Q ss_pred HHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCC-CCCCCChHHHHHHHHHHHHHHHh
Q 002787 496 VQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMN-NTASEHYMVERLIIDDLLCWAVN 574 (881)
Q Consensus 496 V~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~-d~a~e~~mv~k~i~Dsl~~W~~e 574 (881)
|++||++||+||||||||||++++.......|++++|.||+|.+++|.+.|+|||. .+|++||||+|+|+|||+||++|
T Consensus 271 V~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e 350 (697)
T COG1523 271 VKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEE 350 (697)
T ss_pred HHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987555667889999999999999999999987655 66999999999999999999999
Q ss_pred CCceEEEEcCCCcccHHHH-HHHHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccccCCC--Ccceecch
Q 002787 575 YKVDGFRFDLMGHIMKSTM-MKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG--TGIGSFND 651 (881)
Q Consensus 575 ygIDGFRfDlm~h~~~~~~-~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~g--tgig~fnD 651 (881)
|||||||||+|+.+.++.| .++...+-.+-+ .+++. ..+.+++|.||.|+ ..+|...+. .+++.||+
T Consensus 351 ~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~-~~p~l-~~~kliAepwD~g~--------~gyqvG~Fpd~~~~aewng 420 (697)
T COG1523 351 YHVDGFRFDLAGVLGRETMLFDINANLFLAGE-GDPVL-SGVKLIAEPWDIGP--------GGYQVGNFPDSPRWAEWNG 420 (697)
T ss_pred hCCCceeecchhhccccccccccCcchhhhcc-CCccc-cCceeeecchhhcC--------CCcccccCCCccchhhhCC
Confidence 9999999999999999998 344333333332 33333 45679999999886 345665555 67888888
Q ss_pred HHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccccCcccccC
Q 002787 652 RIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYD 731 (881)
Q Consensus 652 r~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~ 731 (881)
++||.+|+ |+.|- .+....+.. ++.||.. .|+
T Consensus 421 ~~rD~vr~-----------F~~G~--------~~~~~~~a~----------------------------rl~gS~d-~~~ 452 (697)
T COG1523 421 RFRDDVRR-----------FWRGD--------AGLVGEFAK----------------------------RLAGSSD-LYK 452 (697)
T ss_pred cccccccc-----------eeeCC--------CccHHHHHH----------------------------HhhcCcc-hhh
Confidence 88888886 66652 122222222 2223321 222
Q ss_pred CCCccccCCCCccEEeeeccccchhhhhhcCC------------------------------------------------
Q 002787 732 GTPVAYALCPTETISYVSAHDNETLFDVVSLK------------------------------------------------ 763 (881)
Q Consensus 732 g~p~~ya~~P~~~INYVs~HDn~tL~D~l~~k------------------------------------------------ 763 (881)
.-+..|.++||||++|||+||+|++.|+
T Consensus 453 ----~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~t 528 (697)
T COG1523 453 ----RNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLAT 528 (697)
T ss_pred ----ccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHH
Confidence 1236899999999999999999999875
Q ss_pred -----CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHH
Q 002787 764 -----GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILA 838 (881)
Q Consensus 764 -----GiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~ 838 (881)
|+||+.+|||++||+.+++|+||++|++|++||+...| .+
T Consensus 529 lllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~-----------------------------------~~ 573 (697)
T COG1523 529 LLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEAN-----------------------------------ND 573 (697)
T ss_pred HHhhcCCcccccccccccccccccccccCCcccceeccCcccc-----------------------------------HH
Confidence 99999999999999999999999999999999992011 36
Q ss_pred HHHHHHHHHHHHhcCcccccCCHHHHh
Q 002787 839 ALENFSDVLRIRYSSPLFRLRTANAIQ 865 (881)
Q Consensus 839 ~~~~~k~Ll~lRkssp~lrlgt~~~I~ 865 (881)
++++.+.||+|||+||+|+..++.+++
T Consensus 574 l~~f~~~lIaLRk~~~af~~~~f~~~~ 600 (697)
T COG1523 574 LVEFTKGLIALRKAHPAFRRRSFFEGK 600 (697)
T ss_pred HHHHHHHHHHHhhhcchhcccchhhcc
Confidence 899999999999999999999998876
No 7
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1e-86 Score=791.84 Aligned_cols=492 Identities=26% Similarity=0.410 Sum_probs=380.9
Q ss_pred CCCCCccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEe-ecCCCcc
Q 002787 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (881)
Q Consensus 206 ~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~-~~p~~g~ 283 (881)
.+.+|||++.+++|+|+||||+|++|+|+||+.... .+...++| +..+|||++.+++..+|.+|+|+|+. ++|..|.
T Consensus 3 ~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~~-~~~~~~~m~~~~~gvW~~~v~~~~~g~~Y~yrv~g~~~~~~g~ 81 (688)
T TIGR02100 3 MPFPLGATWDGQGVNFALFSANAEKVELCLFDAQGE-KEEARLPLPERTDDIWHGYLPGAQPGQLYGYRVHGPYDPENGH 81 (688)
T ss_pred CCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCCCC-ceeeEEecccCCCCEEEEEECCCCCCCEEEEEEeeeeCCCCCc
Confidence 456899999999999999999999999999976432 34457889 66789999999999999999999984 6676664
Q ss_pred c--ceeeecCccccccccCCC-----------------------------cceEeeCCCCCCCCCcccccccCCCCCCCC
Q 002787 284 I--EKCYANDPYARGLSSDGR-----------------------------RTLLVNLDSDTLKPEGWDKLVYEKPDILSF 332 (881)
Q Consensus 284 ~--e~~~vtDPYA~~ls~ng~-----------------------------~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~ 332 (881)
. +..+++||||++++.+.. +|.|+|. +++|... ...|. .++
T Consensus 82 ~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~------~~~w~~~-~~~p~-~~~ 153 (688)
T TIGR02100 82 RFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP------DFDWGGD-EQRPR-TPW 153 (688)
T ss_pred ccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC------CCCCCCc-ccCCC-CCc
Confidence 3 356899999999986521 4666664 2568652 12343 478
Q ss_pred CCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCc
Q 002787 333 SDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (881)
Q Consensus 333 ~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~ 412 (881)
+++||||+|||+|+..+++++...+|||+|++++ .+|+|||+||||||||||||++.+.....
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~-----~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~------------ 216 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHP-----AMIDYLKKLGVTAVELLPVHAFIDDRHLL------------ 216 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhcc-----chhHHHHHcCCCEEEECCcccCCcccccc------------
Confidence 9999999999999988777888899999999985 35888889999999999999985411000
Q ss_pred cccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHH
Q 002787 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (881)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Ef 492 (881)
.....+||||+|.+||+|+++||+++ +++||
T Consensus 217 ---------------------------------------------~~~~~~ywGYd~~~y~a~d~~y~~~g----~~~ef 247 (688)
T TIGR02100 217 ---------------------------------------------EKGLRNYWGYNTLGFFAPEPRYLASG----QVAEF 247 (688)
T ss_pred ---------------------------------------------ccCCCCccCcCcccccccChhhcCCC----CHHHH
Confidence 00113689999999999999999852 58999
Q ss_pred HHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCC--CccccC-CCCCCCCCCChHHHHHHHHHHH
Q 002787 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSD--GFIEHS-TCMNNTASEHYMVERLIIDDLL 569 (881)
Q Consensus 493 r~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~--G~~~~s-tc~~d~a~e~~mv~k~i~Dsl~ 569 (881)
|+||++||++||+||||||||||+..+.......+.++.+.+|++.+.+ |.+.+. .|++++|++|+||+++|+|+++
T Consensus 248 k~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~ 327 (688)
T TIGR02100 248 KTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLR 327 (688)
T ss_pred HHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998765444444566666666666654 556554 5778899999999999999999
Q ss_pred HHHHhCCceEEEEcCCCcccHH-----HHHHHHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccccCCCC
Q 002787 570 CWAVNYKVDGFRFDLMGHIMKS-----TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT 644 (881)
Q Consensus 570 ~W~~eygIDGFRfDlm~h~~~~-----~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~gt 644 (881)
+|+++|||||||||+|+++++. ++..+.+++++- ++ .++++||||+|+.+. ...|...+..
T Consensus 328 ~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d-----~~-~~~~~ligE~W~~~~--------~~~~~~~~~~ 393 (688)
T TIGR02100 328 YWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQD-----PV-LAQVKLIAEPWDIGP--------GGYQVGNFPP 393 (688)
T ss_pred HHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhC-----cc-cCCeEEEEeeecCCC--------CcccccCCCC
Confidence 9999999999999999998763 344555555541 22 267999999998653 1233333456
Q ss_pred cceecchHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCccccc
Q 002787 645 GIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKG 724 (881)
Q Consensus 645 gig~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~G 724 (881)
+|+.|||+|||+||+ |+.|. .+...++. ..++|...
T Consensus 394 ~~~~~Nd~frd~ir~-----------f~~g~--------~~~~~~~~-----------~~l~gs~~-------------- 429 (688)
T TIGR02100 394 GWAEWNDRYRDDMRR-----------FWRGD--------AGMIGELA-----------NRLTGSSD-------------- 429 (688)
T ss_pred ceEEecHHHHHHHHH-----------HHcCC--------CCcHHHHH-----------HHHhCCHh--------------
Confidence 899999999999996 55541 12222222 22233211
Q ss_pred CcccccCCCCccccCCCCccEEeeeccccchhhhhhcC---------------------------------------C--
Q 002787 725 SEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSL---------------------------------------K-- 763 (881)
Q Consensus 725 s~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~~---------------------------------------k-- 763 (881)
.|. .....|.++||||++||++||+|++++ +
T Consensus 430 ----~~~----~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~ 501 (688)
T TIGR02100 430 ----LFE----HNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQ 501 (688)
T ss_pred ----hcc----ccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHH
Confidence 111 112478899999999999999998653 0
Q ss_pred ------------CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCc
Q 002787 764 ------------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKP 831 (881)
Q Consensus 764 ------------GiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~ 831 (881)
||||||||||++|||.|++|+||+.+.+|++||+...
T Consensus 502 ~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~------------------------------- 550 (688)
T TIGR02100 502 QRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDE------------------------------- 550 (688)
T ss_pred HHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCccccc-------------------------------
Confidence 9999999999999999999999999999999998521
Q ss_pred chhhHHHHHHHHHHHHHHHhcCcccccCCHHHH------hccccccc
Q 002787 832 QKSHILAALENFSDVLRIRYSSPLFRLRTANAI------QVRRRHMS 872 (881)
Q Consensus 832 ~~~~~~~~~~~~k~Ll~lRkssp~lrlgt~~~I------~~~v~f~n 872 (881)
...++++++|+||+|||+||+||.+++..+ ...|+|.+
T Consensus 551 ---~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~ 594 (688)
T TIGR02100 551 ---GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLN 594 (688)
T ss_pred ---ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeC
Confidence 114799999999999999999999988754 56788854
No 8
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.7e-76 Score=735.97 Aligned_cols=489 Identities=24% Similarity=0.321 Sum_probs=369.9
Q ss_pred CCCCCccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEe-ecCCCcc
Q 002787 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (881)
Q Consensus 206 ~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~-~~p~~g~ 283 (881)
++.||||++.+++|+|+||||+|++|+|+||+.+.. .....++| .+.+|||++.+++...|++|.|+|+. +.|..+.
T Consensus 12 ~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~~~~-~~~~~~~l~~~~g~vW~~~i~~~~~g~~Ygyrv~g~~~p~~g~ 90 (1221)
T PRK14510 12 FREPLGAVPDGGGVNLALFSGAAERVEFCLFDLWGV-REEARIKLPGRTGDVWHGFIVGVGPGARYGNRQEGPGGPGEGH 90 (1221)
T ss_pred CCCCCceEEECCeEEEEEECCCCCEEEEEEEECCCC-CeeEEEECCCCcCCEEEEEEccCCCCcEEEEEeccCCCccccc
Confidence 567999999999999999999999999999987533 33356888 67889999999999999999999974 3344332
Q ss_pred c--ceeeecCccccccccCCC--c----------------ceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcc
Q 002787 284 I--EKCYANDPYARGLSSDGR--R----------------TLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVR 343 (881)
Q Consensus 284 ~--e~~~vtDPYA~~ls~ng~--~----------------S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVR 343 (881)
. ....++||||+.++.... . +.++++......+++|... ..|. .++++.||||+|||
T Consensus 91 rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~--~~~~-~~~~d~vIYE~hvr 167 (1221)
T PRK14510 91 RFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPR--SPLH-GDWDDSPLYEMNVR 167 (1221)
T ss_pred ccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCC--CCCC-CCcccCeEEEEccc
Confidence 1 235799999999986321 1 1111221111225688753 3333 47899999999999
Q ss_pred cccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCccc
Q 002787 344 DFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSW 423 (881)
Q Consensus 344 dFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (881)
+|+..++..+...+|+|+++.++ ..|+|||+||||+|||||||++.+- .+
T Consensus 168 ~ft~~~~~~gg~~~Gt~~~l~~~-----~~i~yLk~LGvt~I~L~Pi~~~~~~--~~----------------------- 217 (1221)
T PRK14510 168 GFTLRHDFFPGNLRGTFAKLAAP-----EAISYLKKLGVSIVELNPIFASVDE--HH----------------------- 217 (1221)
T ss_pred hhhccCCCCCcccCcHHhhcCCc-----hhHHHHHHcCCCEEEeCCccccCcc--cc-----------------------
Confidence 99987777777899999999964 3477788889999999999987531 10
Q ss_pred ceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcC
Q 002787 424 WIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIG 503 (881)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~G 503 (881)
+. .....+||||+|.+||+|+++||+. +++|||+||++||++|
T Consensus 218 ----------------~~----------------~~g~~~yWGY~~~~yfa~dp~yg~~-----~~~efk~lV~~~H~~G 260 (1221)
T PRK14510 218 ----------------LP----------------QLGLSNYWGYNTVAFLAPDPRLAPG-----GEEEFAQAIKEAQSAG 260 (1221)
T ss_pred ----------------cc----------------cccCcCcCCCCCCCCCCcChhhccC-----cHHHHHHHHHHHHHCC
Confidence 00 0011368999999999999999962 3789999999999999
Q ss_pred CEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCC--CCccccCC-CCCCCCCCChHHHHHHHHHHHHHHHhCCceEE
Q 002787 504 LHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNS--DGFIEHST-CMNNTASEHYMVERLIIDDLLCWAVNYKVDGF 580 (881)
Q Consensus 504 irVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~--~G~~~~st-c~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGF 580 (881)
|+||||||||||+.++.+...-.+..+.+.+|++.+. .+.+.+.+ |.+.+|++|++|+++|+|++++|++ ||||||
T Consensus 261 I~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGf 339 (1221)
T PRK14510 261 IAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGF 339 (1221)
T ss_pred CEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEE
Confidence 9999999999999876554322344444444444442 35566655 4455699999999999999999999 999999
Q ss_pred EEcCCCcc---cHHHHHHHHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccccCCCCcceecchHHHHHh
Q 002787 581 RFDLMGHI---MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAM 657 (881)
Q Consensus 581 RfDlm~h~---~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~gtgig~fnDr~Rdav 657 (881)
|||+|+++ +..+|.+++..|+++.++ .+. +++++|||+|+.+.. .+|...+...++.|||+||++|
T Consensus 340 RfDla~~l~r~~~~f~~~~~~~l~ai~~d--~~l-~~~~ligE~Wd~~~~--------~~~~g~f~~~~~~~N~~frd~v 408 (1221)
T PRK14510 340 RLDLADELAREPDGFIDEFRQFLKAMDQD--PVL-RRLKMIAEVWDDGLG--------GYQYGKFPQYWGEWNDPLRDIM 408 (1221)
T ss_pred EEechhhhccCccchHHHHHHHHHHhCCC--cCc-ccCcEEEecccCCCC--------ccccCCCCcceeeeccHHHHHH
Confidence 99999999 899999999999999864 222 456789999987641 2333334456899999999999
Q ss_pred cCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccccCcccccCCCCccc
Q 002787 658 LGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAY 737 (881)
Q Consensus 658 rgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~y 737 (881)
|+ |+.|. .+...++...+ .|... .|.. -
T Consensus 409 r~-----------f~~g~--------~~~~~~~a~~l-----------~gs~d------------------~~~~----~ 436 (1221)
T PRK14510 409 RR-----------FWLGD--------IGMAGELATRL-----------AGSAD------------------IFPH----R 436 (1221)
T ss_pred HH-----------HhcCC--------CchHHHHHHHH-----------hCcHh------------------hcCc----c
Confidence 97 44441 11112222111 12111 1211 0
Q ss_pred cCCCCccEEeeeccccchhhhhhcCC-----------------------------------------------------C
Q 002787 738 ALCPTETISYVSAHDNETLFDVVSLK-----------------------------------------------------G 764 (881)
Q Consensus 738 a~~P~~~INYVs~HDn~tL~D~l~~k-----------------------------------------------------G 764 (881)
...|..+||||+|||++||+|++.|+ |
T Consensus 437 ~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~G 516 (1221)
T PRK14510 437 RRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPG 516 (1221)
T ss_pred CCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCC
Confidence 14688999999999999999988730 9
Q ss_pred eeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHH
Q 002787 765 IPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFS 844 (881)
Q Consensus 765 iPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k 844 (881)
|||||||||++|||.|+.|+||+++.++.++|+..+ .++++++|
T Consensus 517 iP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~------------------------------------~~l~~f~k 560 (1221)
T PRK14510 517 VPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNED------------------------------------EELLSFFR 560 (1221)
T ss_pred CcEEecchhcccccCCCCCCCCCCCccccCCccccc------------------------------------HHHHHHHH
Confidence 999999999999999999999999999999997411 26899999
Q ss_pred HHHHHHhcCcccccCCHHHHh
Q 002787 845 DVLRIRYSSPLFRLRTANAIQ 865 (881)
Q Consensus 845 ~Ll~lRkssp~lrlgt~~~I~ 865 (881)
+||+|||+||+||.|+...+.
T Consensus 561 ~Li~lRk~~~~L~~g~~~~~~ 581 (1221)
T PRK14510 561 RLIKLRREYGVLRQGEFSSGT 581 (1221)
T ss_pred HHHHHHHhChhhccCccccCc
Confidence 999999999999999887653
No 9
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=7.6e-71 Score=642.86 Aligned_cols=464 Identities=25% Similarity=0.400 Sum_probs=325.1
Q ss_pred eEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceeeecCcccccc
Q 002787 219 VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGL 297 (881)
Q Consensus 219 v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA~~l 297 (881)
|+|+||||+|++|+|+++. ..++| +..+|+|++++++...|.+|+|+|+. +..++||||+++
T Consensus 1 v~FrlwAP~A~~V~L~l~~--------~~~~m~k~~~GvW~~~v~~~~~G~~Y~y~v~g---------~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG--------ALHAMQRLGDGWFEITVPPVGPGDRYGYVLDD---------GTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeCC--------CEEeCeECCCCEEEEEECCCCCCCEEEEEEee---------eEEecCcccccc
Confidence 6899999999999999832 25788 66789999999999999999999973 247899999997
Q ss_pred ccC-CCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHH
Q 002787 298 SSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKK 376 (881)
Q Consensus 298 s~n-g~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~ 376 (881)
... ...|.|+|++.+.|++.+|... +++++||||+|||+|+. +|+|.|++++ |+|
T Consensus 64 ~~~~~~~S~V~d~~~~~w~~~~~~~~--------~~~~~viYE~hv~~f~~---------~G~~~gi~~~-------l~y 119 (542)
T TIGR02402 64 PDGVHGPSQVVDPDRYAWQDTGWRGR--------PLEEAVIYELHVGTFTP---------EGTFDAAIEK-------LPY 119 (542)
T ss_pred ccCCCCCeEEecCcccCCCCccccCC--------CccccEEEEEEhhhcCC---------CCCHHHHHHh-------hHH
Confidence 432 2358999998788888888531 46899999999999985 4999999875 999
Q ss_pred HHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHh
Q 002787 377 LSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITA 456 (881)
Q Consensus 377 L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~ 456 (881)
|++|||||||||||+++.+
T Consensus 120 l~~LGv~~i~L~Pi~~~~~------------------------------------------------------------- 138 (542)
T TIGR02402 120 LADLGITAIELMPVAQFPG------------------------------------------------------------- 138 (542)
T ss_pred HHHcCCCEEEeCccccCCC-------------------------------------------------------------
Confidence 9999999999999998753
Q ss_pred hcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCce
Q 002787 457 IQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL 536 (881)
Q Consensus 457 ~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~ 536 (881)
..||||++.+||+|+++||+ ++|||+||++||++||+||||||||||+.++. .++...| ||+
T Consensus 139 -----~~~~GY~~~~~~~~~~~~G~-------~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~-----~~~~~~~-y~~ 200 (542)
T TIGR02402 139 -----TRGWGYDGVLPYAPHNAYGG-------PDDLKALVDAAHGLGLGVILDVVYNHFGPEGN-----YLPRYAP-YFT 200 (542)
T ss_pred -----CCCCCCCccCccccccccCC-------HHHHHHHHHHHHHCCCEEEEEEccCCCCCccc-----cccccCc-ccc
Confidence 26999999999999999999 56899999999999999999999999976543 3556677 775
Q ss_pred ecCCCCccccCCCCCCCCCCCh---HHHHHHHHHHHHHHHhCCceEEEEcCCCcccH----HHHHHHHHHHHhccccccC
Q 002787 537 RRNSDGFIEHSTCMNNTASEHY---MVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK----STMMKAKHALHSLTKEIHG 609 (881)
Q Consensus 537 r~~~~G~~~~stc~~d~a~e~~---mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~----~~~~~~~~~l~~i~pe~~~ 609 (881)
+.. .+.|++++|++++ ||+++|++++++|+++|||||||||++.+++. .+|.++++.|+++.|+.
T Consensus 201 ~~~------~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~-- 272 (542)
T TIGR02402 201 DRY------STPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAEL-- 272 (542)
T ss_pred CCC------CCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCC--
Confidence 321 2456788999999 99999999999999999999999999998854 48999999999998631
Q ss_pred CCCCceEEEeccCCCcccccccCCCccccccCCCC-cceecchHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChH
Q 002787 610 VDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT-GIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKA 688 (881)
Q Consensus 610 ~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~gt-gig~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~ 688 (881)
+.++|+||.|...... ...... .+. ..+.|||.+|+++++ .+. ...+||..+.. . +.+
T Consensus 273 ---~~~~li~E~~~~~~~~-----~~~~~~--~~~~~d~~~~~~~~~~~~~--~~~-g~~~g~~~~~~-------~-~~~ 331 (542)
T TIGR02402 273 ---RPVHLIAESDLNDPSL-----VTPRED--GGYGLDAQWNDDFHHALHV--LLT-GERQGYYADFG-------D-PLA 331 (542)
T ss_pred ---ceEEEEEecCCCCCcc-----cccccC--CccceEEEECchHHHHHHH--Hhc-CCcceeecccC-------c-CHH
Confidence 3499999998432210 000000 111 357999999999997 221 12334443310 0 122
Q ss_pred HHHHHHHHHHHHHHhhhc--ccchhhhccccCCcccccCcccccCCCCccccCCCCccEEeeeccc---cchhhhhhcCC
Q 002787 689 VEEQMLAAAKDHIQVGLA--ANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHD---NETLFDVVSLK 763 (881)
Q Consensus 689 ~~~~~l~~~~d~i~~gla--GnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HD---n~tL~D~l~~k 763 (881)
... ..+..|.. |....|. + ...|.|.+. ..|.+.|||++||| |.++++.+...
T Consensus 332 ~l~-------~~l~~g~~~~~~~~~~~----------~----~~~~~~~~~-~~~~~~vnfl~nHD~~gn~~~~~Rl~~~ 389 (542)
T TIGR02402 332 ALA-------KTLRDGFVYDGEYSPFR----------G----RPHGRPSGD-LPPHRFVVFIQNHDQIGNRALGERLSQL 389 (542)
T ss_pred HHH-------HHHHHhcccCccccccc----------c----ccCCCCCCC-CCHHHEEEEccCcccccccchhhhhhhc
Confidence 211 12222211 1111110 0 012223232 35788999999999 66666655421
Q ss_pred -----------------CeeeEecCccccccCCCCCCC-C-C----------CCCCcccccCCCCCCCCCCCCCCC----
Q 002787 764 -----------------GIPFFHCGDEILRSKSLDRDS-Y-N----------SGDWLNRIDFSYNSNNWGVGLPPK---- 810 (881)
Q Consensus 764 -----------------GiPfiy~GdE~grSksgd~ds-Y-~----------sgDw~N~~dw~~~~nn~~~Glp~~---- 810 (881)
||||||||+|+|++|...--. . + .-..|..+.|... ...-|..
T Consensus 390 ~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~----~~pdp~~~~~~ 465 (542)
T TIGR02402 390 LSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPE----DVPDPQDEETF 465 (542)
T ss_pred CCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccc----cCCCCCchhhH
Confidence 999999999999998631000 0 0 0001111111100 0000000
Q ss_pred ccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCCHHHHhccc
Q 002787 811 EKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQVRR 868 (881)
Q Consensus 811 ~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lRkssp~lrlgt~~~I~~~v 868 (881)
..|.-.|... ...+..+++++||+||+|||++|+||+++.+.|...+
T Consensus 466 ~~~~~~W~~~-----------~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~ 512 (542)
T TIGR02402 466 LRSKLDWAEA-----------ESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVV 512 (542)
T ss_pred hhccCCcccc-----------cccchHHHHHHHHHHHHHhccCccccCCCcccceeee
Confidence 0122233321 0112347999999999999999999999988887644
No 10
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-70 Score=627.52 Aligned_cols=617 Identities=27% Similarity=0.363 Sum_probs=437.5
Q ss_pred ccceeEEEeCCEEEEecCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCCCCChhhhhcCCccccCceeeeCCCc
Q 002787 92 LYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKGGLPANVIEKFPHIRDYKAFKVPAGS 171 (881)
Q Consensus 92 ~~~~a~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~ 171 (881)
...|++|++...++|+..... +-.++...++.. .+..++|+.....++..+.++++++..|. ++...
T Consensus 6 ~~sr~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~-------~~~~~~~e~~~~~~p~~~ve~~~~~d~~~---~~~~~ 72 (757)
T KOG0470|consen 6 ISSRFYWHTKLVIVWSVDTLE---KTGALKPAKLEF-------YDLRSALEAKSGDLPADVVEKFYEIDPFL---VPFAL 72 (757)
T ss_pred hhhcceecccceEEeeeeccc---cccccccccccc-------hhhHHHhhhhcCCCChHHhhccccccccc---ccccc
Confidence 457999999999999876322 112222222222 22234555555678878889999999765 55555
Q ss_pred chHHHHHhhhhc--cccccccccccccchhhhcccCCCCCCccEEeCCe-eEEEEEcCCCCeEEEE-EeeCCCCCCCceE
Q 002787 172 DAKLLLKCQLAV--ADRKCSDATGLQLPGILDELFSYDGPLGALYAEET-VSLYLWAPTAQSVSAC-IYRDPLGGNPLEV 247 (881)
Q Consensus 172 ~~~~~l~~ql~~--~~g~~~~~t~vq~~~~lD~ly~~~~~LGa~~~~~~-v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~ 247 (881)
.++..++.+..+ -+++ ..-+++++++. |+ +||++...++ +.|+.|||.|+.|.|+ .+|.|+. ..
T Consensus 73 ~~~~~~~~~~~~~~f~~~----~~~~l~~~~~~---y~-~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~----~~ 140 (757)
T KOG0470|consen 73 FLRERYKQLDDGLEFIGK----SEGGLSAFSRG---YE-PLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNP----SS 140 (757)
T ss_pred cchhhHHHHHHHhhhhhh----ccCChhhhhcc---cc-ccceeccCCCceeeeeecccccccccccccCCCCC----cc
Confidence 666666666553 1221 12566666666 34 8999998766 9999999999999999 4566653 22
Q ss_pred Eec--ccCCCEEEEEcCCC--CCCcEEEEEEEeecCCCcccceeeecCccccccccCCCcceEeeCCCCCCCCCcccccc
Q 002787 248 VQL--KENDGVWSIKGPKS--WEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLV 323 (881)
Q Consensus 248 ~~M--~~~~GvWsv~v~~~--~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA~~ls~ng~~S~vvDl~~~~~~P~~W~~~~ 323 (881)
..| +.+.|+|++.++.. +.+..+.+.+...++.+...+++...|||++.+..++...|.+.+......+++|+...
T Consensus 141 ~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~ 220 (757)
T KOG0470|consen 141 NELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKH 220 (757)
T ss_pred cccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccC
Confidence 333 67889999999965 77777877777666666555778899999999998888888877766667788998752
Q ss_pred cCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccc
Q 002787 324 YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENW 403 (881)
Q Consensus 324 ~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~ 403 (881)
.+|.+ +.++++|||+|||+||.+++++.. +|.|++|++| .++||| +||+|||||||||++..
T Consensus 221 -~~p~~-P~~sL~IYE~HVrgfS~~E~~v~~--~~gY~~FteK---vlphlK---~LG~NaiqLmpi~Ef~~-------- 282 (757)
T KOG0470|consen 221 -SRPKI-PESSLRIYELHVRGFSSHESKVNT--RGGYLGFTEK---VLPHLK---KLGYNAIQLMPIFEFGH-------- 282 (757)
T ss_pred -CCCCC-ChhheEEEEEeeccccCCCCcccc--ccchhhhhhh---hhhHHH---HhCccceEEeehhhhhh--------
Confidence 34432 334999999999999999888766 5559999997 355555 55999999999999941
Q ss_pred cccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCC
Q 002787 404 KSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483 (881)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~ 483 (881)
...+|||.|++||||.++||| |
T Consensus 283 ---------------------------------------------------------~~~s~GY~~~nFFapssrYgt-~ 304 (757)
T KOG0470|consen 283 ---------------------------------------------------------YYASWGYQVTNFFAPSSRYGT-P 304 (757)
T ss_pred ---------------------------------------------------------hhhccCcceeEeecccccccC-C
Confidence 025999999999999999999 5
Q ss_pred CCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHH
Q 002787 484 NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERL 563 (881)
Q Consensus 484 dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~ 563 (881)
+.+.||+|||.||++||.+||.||||||+||+++ ++-+..+.||+++|++|.+.++ +.+.+++|.+.+|++|+||++|
T Consensus 305 ~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~~fdGid~~~Yf~~~~-r~~h~~~~~r~fn~~~~~V~rf 382 (757)
T KOG0470|consen 305 ESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLNMFDGIDNSVYFHSGP-RGYHNSWCSRLFNYNHPVVLRF 382 (757)
T ss_pred CcccchHHHHHHHHHHhhCCcEEehhhhhhhccc-CcCCcchhccCcCCceEEEeCC-cccccccccccccCCCHHHHHH
Confidence 5688999999999999999999999999999998 6666778899999888877777 6688899999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccCCCcccccccCCCccccccCCC
Q 002787 564 IIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG 643 (881)
Q Consensus 564 i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~g 643 (881)
|+++|++|++||||||||||+|++|.+....- ..+++|.-.+.+|+.|++.+++...+...|.+..+.+
T Consensus 383 lL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~-----------~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~ 451 (757)
T KOG0470|consen 383 LLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGN-----------AAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGG 451 (757)
T ss_pred HHHHHHHHHHheeccceEEcchhhhhhhcccc-----------ccccCCcchhhhccCCCcccccHHHHHHhhcchhhhc
Confidence 99999999999999999999999998743111 1113344456667777666655554545566665555
Q ss_pred CcceecchHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccc
Q 002787 644 TGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVK 723 (881)
Q Consensus 644 tgig~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~ 723 (881)
+. +.+++..+.+=-.+.. ..|..||++..... .+..+.....+++ +|.+ .. +-+...
T Consensus 452 ~~-~~It~~~D~~gm~~~~-~~P~~~g~~~~d~~------------yr~~~~~~~k~~~-~Lk~----~~----~~~~~~ 508 (757)
T KOG0470|consen 452 TP-GLITDAEDVSGMPGLG-CFPVWQGGAGFDGL------------YRLAVRLFDKWIQ-LLKG----SS----DAEWIM 508 (757)
T ss_pred CC-cceEeeeccccCCCcC-Cccccccccccchh------------hhHHhhhHHHHHH-Hhcc----Cc----hhheec
Confidence 54 3444433322111110 22334444332100 0111111111111 1111 11 111333
Q ss_pred cCcccccCCCCccccCCCCccEEeeeccccchhhhhhcCC----------------------------------------
Q 002787 724 GSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK---------------------------------------- 763 (881)
Q Consensus 724 Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~~k---------------------------------------- 763 (881)
|+..+.. . -..-|...|||+++||..++.|+.++.
T Consensus 509 gs~~~~l-t----N~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~l 583 (757)
T KOG0470|consen 509 GSIDYTL-T----NRRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGL 583 (757)
T ss_pred cCcceee-e----ccccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4322111 0 014578889999999998888854432
Q ss_pred --CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHH
Q 002787 764 --GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALE 841 (881)
Q Consensus 764 --GiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~ 841 (881)
|+|++|||+|+|+++.+++++|+++.|++...| ++.|..+|+.++.....+++++++.
T Consensus 584 g~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~-------------~~f~~~~~~~~r~~~~l~~F~~~~~------- 643 (757)
T KOG0470|consen 584 GGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARR-------------KRFDLADSDLLRYRRQLNSFDREMN------- 643 (757)
T ss_pred cCccceeccccccCCccccCCCcccCCccccccCc-------------cccccccchhhhhhhhhhhhhhHHH-------
Confidence 999999999999999999999988766666555 4567888888887666666665532
Q ss_pred HHHHHHHHHhcCcccccCCHHHHhcccccc
Q 002787 842 NFSDVLRIRYSSPLFRLRTANAIQVRRRHM 871 (881)
Q Consensus 842 ~~k~Ll~lRkssp~lrlgt~~~I~~~v~f~ 871 (881)
.-++..++.+.++....+..++.+.+.|.
T Consensus 644 -~L~~~~~~~~~~~~~~~~k~e~~~~i~fe 672 (757)
T KOG0470|consen 644 -LLEERNGFTTSELQYISLKHEADEVIVFE 672 (757)
T ss_pred -HHHHhccccccccccccccchhhheeeec
Confidence 34677778889999999999999999986
No 11
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=2.6e-61 Score=570.58 Aligned_cols=303 Identities=23% Similarity=0.362 Sum_probs=242.5
Q ss_pred CCccEEeC----CeeEEEEEcCCCCeEEEEE-eeCCCCCCCceEEec-cc-CCCEEEEEcCCCCCCcEEEEEEEeecCCC
Q 002787 209 PLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KE-NDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (881)
Q Consensus 209 ~LGa~~~~----~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~-~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~ 281 (881)
.||||+.+ ++++||||||+|++|+|++ |+.+.+ ...+| +. .+|+|++.+++...|.+|+|+|+.. .
T Consensus 16 ~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~----~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~---~ 88 (613)
T TIGR01515 16 LLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDG----REHPMRRRNDNGIWELFIPGIGEGELYKYEIVTN---N 88 (613)
T ss_pred hcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCC----ceecceEecCCCEEEEEeCCCCCCCEEEEEEECC---C
Confidence 59999987 6899999999999999996 555432 34677 33 5799999999999999999999742 1
Q ss_pred cccceeeecCccccccccCCC-cceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCccc
Q 002787 282 LQIEKCYANDPYARGLSSDGR-RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (881)
Q Consensus 282 g~~e~~~vtDPYA~~ls~ng~-~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y 360 (881)
| +...++||||+.+..++. .|.|+|++++.|.|.+|... ++|.....+++||||+|||+|+. .|+|
T Consensus 89 g--~~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~~w~~~--~~~~~~~~~~~~iYe~hv~~~~~---------~g~~ 155 (613)
T TIGR01515 89 G--EIRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQKWQEK--RKAKTPYEKPVSIYELHLGSWRH---------GLSY 155 (613)
T ss_pred C--cEEEeCCCCEeeeccCCCCcEEEECCccCccCchhhhhc--ccccCcccCCceEEEEehhhccC---------CCCH
Confidence 2 345799999999987654 78999999999999999874 44433334578999999999974 2999
Q ss_pred ccccccchhhhhhH-HHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhh
Q 002787 361 LAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439 (881)
Q Consensus 361 ~g~tek~~~~i~hL-~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (881)
.+++++ | +||++||||+||||||+++..
T Consensus 156 ~~i~~~-------l~dyl~~LGvt~i~L~Pi~e~~~-------------------------------------------- 184 (613)
T TIGR01515 156 RELADQ-------LIPYVKELGFTHIELLPVAEHPF-------------------------------------------- 184 (613)
T ss_pred HHHHHH-------HHHHHHHcCCCEEEECCcccCCC--------------------------------------------
Confidence 998765 6 889999999999999998742
Q ss_pred hhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCC
Q 002787 440 LEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSG 519 (881)
Q Consensus 440 l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g 519 (881)
..||||++.+||+|+++||+ .+|||+||++||++||+|||||||||++.++
T Consensus 185 ----------------------~~~wGY~~~~y~~~~~~~Gt-------~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 185 ----------------------DGSWGYQVTGYYAPTSRFGT-------PDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred ----------------------CCCCCCCcccCcccccccCC-------HHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 25899999999999999999 4589999999999999999999999998653
Q ss_pred CCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCccc----------
Q 002787 520 PFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM---------- 589 (881)
Q Consensus 520 ~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~---------- 589 (881)
.. ...++.. |.|++.....+.. +..+..++|+++++|+++|++++++|+++|||||||||++.++.
T Consensus 236 ~~--~~~~~~~-~~y~~~~~~~~~~-~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~ 311 (613)
T TIGR01515 236 HG--LAEFDGT-PLYEHKDPRDGEH-WDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGE 311 (613)
T ss_pred ch--hhccCCC-cceeccCCccCcC-CCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccc
Confidence 21 1123332 3344332222222 22345688999999999999999999999999999999986652
Q ss_pred --------------HHHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 590 --------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 590 --------------~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
.++|+++++.|+++. ++++++||.+.
T Consensus 312 ~~~~~~~~~~~~~~~~fl~~~~~~v~~~~--------p~~~liaE~~~ 351 (613)
T TIGR01515 312 WSPNEDGGRENLEAVDFLRKLNQTVYEAF--------PGVVTIAEEST 351 (613)
T ss_pred ccccccCCcCChHHHHHHHHHHHHHHHHC--------CCeEEEEEeCC
Confidence 578999999999988 46999999763
No 12
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-60 Score=574.61 Aligned_cols=310 Identities=22% Similarity=0.313 Sum_probs=246.9
Q ss_pred CCCccEEeC----CeeEEEEEcCCCCeEEEEE-eeCCCCCCCceEEec-cc-CCCEEEEEcCCCCCCcEEEEEEEeecCC
Q 002787 208 GPLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KE-NDGVWSIKGPKSWEGCYYVYEVSVYHPS 280 (881)
Q Consensus 208 ~~LGa~~~~----~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~-~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~ 280 (881)
..|||+..+ ++|+||||||.|++|+|+. |+.+.+ ...+| +. .+|+|++++++...|..|+|+|+..
T Consensus 118 ~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~----~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~--- 190 (726)
T PRK05402 118 ETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDG----RRHPMRLRGESGVWELFIPGLGEGELYKFEILTA--- 190 (726)
T ss_pred hccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCC----ccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCC---
Confidence 369999985 7999999999999999996 665543 24578 34 7899999999999999999999842
Q ss_pred CcccceeeecCccccccccC-CCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcc
Q 002787 281 ALQIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGG 359 (881)
Q Consensus 281 ~g~~e~~~vtDPYA~~ls~n-g~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~ 359 (881)
.| +...+.||||+++..+ ...|+|+|++.+.|++.+|... +++.....++++|||+|||+|+.. .+....|+
T Consensus 191 ~g--~~~~~~DPYa~~~~~~~~~~s~v~d~~~~~w~~~~~~~~--~~~~~~~~~~~~iYe~hv~~f~~~---~~~~~~g~ 263 (726)
T PRK05402 191 DG--ELLLKADPYAFAAEVRPATASIVADLSQYQWNDAAWMEK--RAKRNPLDAPISIYEVHLGSWRRH---EDGGRFLS 263 (726)
T ss_pred CC--cEeecCCCceEEEecCCCCcEEEeCCccCCCCCcchhhc--ccccCcccCCcEEEEEehhhhccC---CCCCcccC
Confidence 12 3456899999999875 3578999999999999999764 333334567899999999999874 12344689
Q ss_pred cccccccchhhhhhH-HHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhh
Q 002787 360 YLAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAE 438 (881)
Q Consensus 360 y~g~tek~~~~i~hL-~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (881)
|.+++++ | +||++||||+||||||++++.
T Consensus 264 ~~~i~~~-------l~~ylk~LGv~~i~L~Pi~e~~~------------------------------------------- 293 (726)
T PRK05402 264 YRELADQ-------LIPYVKEMGFTHVELLPIAEHPF------------------------------------------- 293 (726)
T ss_pred HHHHHHH-------HHHHHHHcCCCEEEECCcccCCC-------------------------------------------
Confidence 9888764 5 889999999999999998752
Q ss_pred hhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCC
Q 002787 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGS 518 (881)
Q Consensus 439 ~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~ 518 (881)
..+|||++.+||+|+++||+ ++|||+||++||++||+||||+|+||++.+
T Consensus 294 -----------------------~~~~GY~~~~y~ai~~~~Gt-------~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 294 -----------------------DGSWGYQPTGYYAPTSRFGT-------PDDFRYFVDACHQAGIGVILDWVPAHFPKD 343 (726)
T ss_pred -----------------------CCCCCCCcccCCCcCcccCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 25899999999999999999 568999999999999999999999999765
Q ss_pred CCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcc----------
Q 002787 519 GPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI---------- 588 (881)
Q Consensus 519 g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~---------- 588 (881)
+.. ...+|.. +.|++.....|....+.. .++|+++++|+++|++++++|+++|||||||||++.++
T Consensus 344 ~~~--~~~~~~~-~~y~~~~~~~~~~~~w~~-~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g 419 (726)
T PRK05402 344 AHG--LARFDGT-ALYEHADPREGEHPDWGT-LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG 419 (726)
T ss_pred ccc--hhccCCC-cceeccCCcCCccCCCCC-ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccc
Confidence 321 1223432 344443222343333332 26799999999999999999999999999999998765
Q ss_pred --------------cHHHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 589 --------------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 589 --------------~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
..++|+++++.|+++.| +++++||.+.
T Consensus 420 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p--------~~~liaE~~~ 460 (726)
T PRK05402 420 EWIPNIYGGRENLEAIDFLRELNAVVHEEFP--------GALTIAEEST 460 (726)
T ss_pred ccccccccCcCCHHHHHHHHHHHHHHHHHCC--------CeEEEEECCC
Confidence 35789999999999884 6999999653
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-60 Score=567.26 Aligned_cols=310 Identities=24% Similarity=0.326 Sum_probs=245.5
Q ss_pred CCCccEEeCC----eeEEEEEcCCCCeEEEEE-eeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCC
Q 002787 208 GPLGALYAEE----TVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (881)
Q Consensus 208 ~~LGa~~~~~----~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~ 281 (881)
..|||++.++ +|+||||||.|++|+|+. |+++.. ..++| +..+|+|++++++...|..|+|+|....
T Consensus 25 ~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~----~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~--- 97 (633)
T PRK12313 25 EYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRG----NAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQD--- 97 (633)
T ss_pred hcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCc----ccccccccCCCEEEEEeCCCCCCCEEEEEEECCC---
Confidence 3699999876 899999999999999994 665543 34778 5578999999999899999999996421
Q ss_pred cccceeeecCccccccccC-CCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCccc
Q 002787 282 LQIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (881)
Q Consensus 282 g~~e~~~vtDPYA~~ls~n-g~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y 360 (881)
| +...+.||||+.+... ...|+|+|++.+.|++..|... +++......+++|||+|||+|+..+. ...|+|
T Consensus 98 g--~~~~~~DPya~~~~~~~~~~s~v~d~~~~~w~~~~~~~~--~~~~~~~~~~~~iYe~hv~~f~~~~~----~~~g~~ 169 (633)
T PRK12313 98 G--YQVEKIDPFAFYFEARPGTASIVWDLPEYKWKDGLWLAR--RKRWNALDRPISIYEVHLGSWKRNED----GRPLSY 169 (633)
T ss_pred C--eEEecCCCceEEEecCCCCceEECCCcccCCCChhhhhc--cccCCCCCCCceEEEEehhccccCCC----CCccCH
Confidence 2 3457899999999763 4578999998889999999764 33322344779999999999997532 346999
Q ss_pred ccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhh
Q 002787 361 LAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVL 440 (881)
Q Consensus 361 ~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 440 (881)
.+++++ -|+||++||||+||||||++++.
T Consensus 170 ~~~~~~------ll~yl~~LGv~~i~L~Pi~~~~~--------------------------------------------- 198 (633)
T PRK12313 170 RELADE------LIPYVKEMGYTHVEFMPLMEHPL--------------------------------------------- 198 (633)
T ss_pred HHHHHH------HHHHHHHcCCCEEEeCchhcCCC---------------------------------------------
Confidence 988764 14889999999999999998753
Q ss_pred hcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCC
Q 002787 441 EKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP 520 (881)
Q Consensus 441 ~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~ 520 (881)
..+|||++.+||+|+++||| .+|||+||++||++||+||||+|+||++.++.
T Consensus 199 ---------------------~~~~GY~~~~y~~i~~~~Gt-------~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 199 ---------------------DGSWGYQLTGYFAPTSRYGT-------PEDFMYLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred ---------------------CCCCCCCCcCcCcCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 25899999999999999999 46899999999999999999999999986543
Q ss_pred CCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcc------------
Q 002787 521 FDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI------------ 588 (881)
Q Consensus 521 ~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~------------ 588 (881)
. ...+|.. | +|...++.........+.++|++|++|+++|++++++|+++|||||||||++.++
T Consensus 251 ~--~~~~~~~-~-~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~ 326 (633)
T PRK12313 251 G--LAYFDGT-P-LYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWT 326 (633)
T ss_pred c--ccccCCC-c-ceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcC
Confidence 1 1233432 2 3333333222222233568899999999999999999999999999999988654
Q ss_pred -----------cHHHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 589 -----------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 589 -----------~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
..++|+++++.|+++.| +++++||.|.
T Consensus 327 ~~~~~~~~~~~~~~fl~~~~~~v~~~~p--------~~~liaE~~~ 364 (633)
T PRK12313 327 PNKYGGRENLEAIYFLQKLNEVVYLEHP--------DVLMIAEEST 364 (633)
T ss_pred CcccCCCCCcHHHHHHHHHHHHHHHHCC--------CeEEEEECCC
Confidence 25789999999999884 6899999874
No 14
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-57 Score=538.65 Aligned_cols=307 Identities=23% Similarity=0.320 Sum_probs=233.8
Q ss_pred CCCccEEeCC----eeEEEEEcCCCCeEEEEE-eeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCC
Q 002787 208 GPLGALYAEE----TVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (881)
Q Consensus 208 ~~LGa~~~~~----~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~ 281 (881)
..|||+..+. +++|+||||+|++|+|+. |+.+++ ..++| +...|+|++.+++...|..|+|+|+..+
T Consensus 25 ~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~----~~~pM~~~~~GvW~~~vpg~~~g~~Yky~I~~~~--- 97 (639)
T PRK14706 25 HLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNG----FDHPMQRLDFGFWGAFVPGARPGQRYKFRVTGAA--- 97 (639)
T ss_pred HhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccc----ccccccccCCCEEEEEECCCCCCCEEEEEEECCC---
Confidence 3699998753 799999999999999996 555543 34688 5577999999999999999999998521
Q ss_pred cccceeeecCccccccccCCCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccc
Q 002787 282 LQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYL 361 (881)
Q Consensus 282 g~~e~~~vtDPYA~~ls~ng~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~ 361 (881)
| ....+.||||+.+..+...+.+|+..++.|++.+|... +.|.+ .++++|||+|||+|+.... ...|+|.
T Consensus 98 g--~~~~~~DPYa~~~~~~~~~~svv~~~~~~w~d~~w~~~--~~~~~--~~~~~IYE~Hvg~f~~~~~----g~~~ty~ 167 (639)
T PRK14706 98 G--QTVDKMDPYGSFFEVRPNTASIIWEDRFEWTDTRWMSS--RTAGF--DQPISIYEVHVGSWARRDD----GWFLNYR 167 (639)
T ss_pred C--CEEeccCcceEEEecCCCCceEECCCCCCCCCcccccc--cCCcc--CCCcEEEEEehhhcccCCC----CCccCHH
Confidence 2 23568999999998776544444334578888888653 33332 3469999999999986421 1246777
Q ss_pred cccccchhhhhhH-HHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhh
Q 002787 362 AFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVL 440 (881)
Q Consensus 362 g~tek~~~~i~hL-~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 440 (881)
+++++ | +|||+|||||||||||++++.
T Consensus 168 ~~~~~-------l~~ylk~lG~t~velmPv~e~~~--------------------------------------------- 195 (639)
T PRK14706 168 ELAHR-------LGEYVTYMGYTHVELLGVMEHPF--------------------------------------------- 195 (639)
T ss_pred HHHHH-------HHHHHHHcCCCEEEccchhcCCC---------------------------------------------
Confidence 77654 5 788999999999999998753
Q ss_pred hcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCC
Q 002787 441 EKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP 520 (881)
Q Consensus 441 ~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~ 520 (881)
..+|||++.+||+|+++||+ .+|||+||++||++||+|||||||||++.++.
T Consensus 196 ---------------------~~~wGY~~~~~~~~~~~~g~-------~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~ 247 (639)
T PRK14706 196 ---------------------DGSWGYQVTGYYAPTSRLGT-------PEDFKYLVNHLHGLGIGVILDWVPGHFPTDES 247 (639)
T ss_pred ---------------------CCCCCcCcccccccccccCC-------HHHHHHHHHHHHHCCCEEEEEecccccCcchh
Confidence 25899999999999999998 56899999999999999999999999976432
Q ss_pred CCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcc------------
Q 002787 521 FDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI------------ 588 (881)
Q Consensus 521 ~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~------------ 588 (881)
. ...+|. .|.|++.....|...++.. ..+|..+++|+++|++++++|++||||||||||++.+|
T Consensus 248 ~--l~~~dg-~~~y~~~~~~~g~~~~w~~-~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~ 323 (639)
T PRK14706 248 G--LAHFDG-GPLYEYADPRKGYHYDWNT-YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVP 323 (639)
T ss_pred h--hhccCC-CcceeccCCcCCcCCCCCC-cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccc
Confidence 1 122343 2444433222232222221 23688999999999999999999999999999998886
Q ss_pred ----------cHHHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 589 ----------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 589 ----------~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
...+|+++.+.+++.. ++++++||.|.
T Consensus 324 ~~~gg~~n~~a~~fl~~ln~~v~~~~--------p~~~~iAE~~~ 360 (639)
T PRK14706 324 NIHGGRENLEAIAFLKRLNEVTHHMA--------PGCMMIAEEST 360 (639)
T ss_pred cccCCcccHHHHHHHHHHHHHHHHhC--------CCeEEEEECCC
Confidence 2357778888888877 46999999885
No 15
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.5e-57 Score=536.33 Aligned_cols=307 Identities=21% Similarity=0.333 Sum_probs=243.0
Q ss_pred CCccEEe----CCeeEEEEEcCCCCeEEEEE-eeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCc
Q 002787 209 PLGALYA----EETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSAL 282 (881)
Q Consensus 209 ~LGa~~~----~~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g 282 (881)
.|||+.. .++|+|+||||+|++|+|+. |+.+++ ..++| ...+|+|++++++...|.+|+|+|... .|
T Consensus 126 ~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg----~~~pM~~~~~GVWelfipg~~~G~~YKYeI~~~---~G 198 (730)
T PRK12568 126 ALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDV----RRHPMRQRIGGFWELFLPRVEAGARYKYAITAA---DG 198 (730)
T ss_pred hcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCc----cceecccCCCCEEEEEECCCCCCCEEEEEEEcC---CC
Confidence 5999986 25899999999999999995 666543 46788 558999999999999999999999852 23
Q ss_pred ccceeeecCccccccccCCC-cceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccc
Q 002787 283 QIEKCYANDPYARGLSSDGR-RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYL 361 (881)
Q Consensus 283 ~~e~~~vtDPYA~~ls~ng~-~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~ 361 (881)
+...++||||+.++.++. .|.|.++..+.|++..|... +.|. ...++++|||+|||+|+..+. ...++|.
T Consensus 199 --~~~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d~~W~~~--r~~~-~~~~~~~IYEvHvgsf~~~~~----~~~~~~~ 269 (730)
T PRK12568 199 --RVLLKADPVARQTELPPATASVVPSAAAFAWTDAAWMAR--RDPA-AVPAPLSIYEVHAASWRRDGH----NQPLDWP 269 (730)
T ss_pred --eEeecCCCcceEeecCCCCCeEEcCCCCCCCCChhhhhc--cccc-CCCCCcEEEEEEhHHhcCCCC----CCCCCHH
Confidence 245689999999987664 56666777788999999764 4444 367899999999999997532 2347899
Q ss_pred cccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhh
Q 002787 362 AFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLE 441 (881)
Q Consensus 362 g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 441 (881)
+++++ .|+||++|||||||||||+++..
T Consensus 270 ~la~~------ll~ylk~LGvt~I~LmPi~e~~~---------------------------------------------- 297 (730)
T PRK12568 270 TLAEQ------LIPYVQQLGFTHIELLPITEHPF---------------------------------------------- 297 (730)
T ss_pred HHHHH------HHHHHHHcCCCEEEECccccCCC----------------------------------------------
Confidence 88764 46889999999999999998742
Q ss_pred cCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCC
Q 002787 442 KLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521 (881)
Q Consensus 442 ~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~ 521 (881)
..+|||+|.+||+|+++||+ ++|||+||++||++||+||||+|+||++.++.
T Consensus 298 --------------------~~~wGY~~~~~~a~~~~~G~-------~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~- 349 (730)
T PRK12568 298 --------------------GGSWGYQPLGLYAPTARHGS-------PDGFAQFVDACHRAGIGVILDWVSAHFPDDAH- 349 (730)
T ss_pred --------------------CCCCCCCCCcCCccCcccCC-------HHHHHHHHHHHHHCCCEEEEEeccccCCcccc-
Confidence 26899999999999999999 56899999999999999999999999986532
Q ss_pred CCCCccCCCCCCCceecCC-CCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCccc-----------
Q 002787 522 DDNSVLDKVVPGYYLRRNS-DGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM----------- 589 (881)
Q Consensus 522 ~~~s~lDk~vP~YY~r~~~-~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~----------- 589 (881)
....+|.. .+|...++ .|....+.+. .+|+.+++|+++|++++++|+++|||||||||++.+|.
T Consensus 350 -~l~~fdg~--~~Ye~~d~~~g~~~~W~~~-~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 350 -GLAQFDGA--ALYEHADPREGMHRDWNTL-IYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred -ccccCCCc--cccccCCCcCCccCCCCCe-ecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccc
Confidence 11234432 23432232 2433333222 57999999999999999999999999999999886552
Q ss_pred -------------HHHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 590 -------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 590 -------------~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
.++|+++.+.|++.. ++++++||.+.
T Consensus 426 ~pn~~gg~en~ea~~Fl~~ln~~v~~~~--------P~~~~IAEest 464 (730)
T PRK12568 426 VPNAHGGRENLEAVAFLRQLNREIASQF--------PGVLTIAEEST 464 (730)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHC--------CCeEEEEEcCC
Confidence 357888888888887 46999999754
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.1e-56 Score=547.33 Aligned_cols=303 Identities=23% Similarity=0.335 Sum_probs=238.8
Q ss_pred CCccEEeC--------CeeEEEEEcCCCCeEEEE-EeeCCCCCCCceEEecc--cCCCEEEEEcCCCCCCcEEEEEEEee
Q 002787 209 PLGALYAE--------ETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWEGCYYVYEVSVY 277 (881)
Q Consensus 209 ~LGa~~~~--------~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M~--~~~GvWsv~v~~~~~G~~Y~Y~V~~~ 277 (881)
.||||... ++|+|+||||+|++|+|+ .||.|++ ..++|+ ..+|+|++++++...|.+|+|+|+..
T Consensus 622 ~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~----~~~~m~~~~~~GvW~~fipg~~~G~~Yky~i~~~ 697 (1224)
T PRK14705 622 VLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDG----REHSMRSLGSSGVWELFIPGVVAGACYKFEILTK 697 (1224)
T ss_pred hcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCC----CcccceECCCCCEEEEEECCCCCCCEEEEEEEcC
Confidence 59999842 389999999999999999 4887765 345783 57899999999999999999999852
Q ss_pred cCCCcccceeeecCccccccccCC-CcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCC
Q 002787 278 HPSALQIEKCYANDPYARGLSSDG-RRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDF 356 (881)
Q Consensus 278 ~p~~g~~e~~~vtDPYA~~ls~ng-~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~ 356 (881)
.| +...+.||||+....+. ..|+|+|+ ++.|++.+|... +.+.....++++|||+|||+|+.
T Consensus 698 ---~g--~~~~k~DPyA~~~e~~p~~aS~V~d~-~~~w~d~~W~~~--r~~~~~~~~p~~IYEvHvgsf~~--------- 760 (1224)
T PRK14705 698 ---AG--QWVEKADPLAFGTEVPPLTASRVVEA-SYAFKDAEWMSA--RAERDPHNSPMSVYEVHLGSWRL--------- 760 (1224)
T ss_pred ---CC--cEEecCCccccccccCCCCCeEEeCC-CCCcCChhhhhc--cccCCCCcCCcEEEEEEeccccc---------
Confidence 23 34578999999988765 47899998 488999999864 33322234789999999999975
Q ss_pred CcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchh
Q 002787 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (881)
Q Consensus 357 rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (881)
.|+|.+++++ .|+|||+|||||||||||++++.
T Consensus 761 ~~~~~~l~~~------lldYlk~LGvt~IeLmPv~e~p~----------------------------------------- 793 (1224)
T PRK14705 761 GLGYRELAKE------LVDYVKWLGFTHVEFMPVAEHPF----------------------------------------- 793 (1224)
T ss_pred CCchHHHHHH------HHHHHHHhCCCEEEECccccCCC-----------------------------------------
Confidence 3789888753 36888999999999999998752
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccC
Q 002787 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (881)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~ 516 (881)
..||||++.+||+|+++||+ .+|||+||++||++||+||||+|+||++
T Consensus 794 -------------------------~~swGY~~~~y~ap~~ryGt-------~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 794 -------------------------GGSWGYQVTSYFAPTSRFGH-------PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred -------------------------CCCCCCCccccCCcCcccCC-------HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 26999999999999999998 4689999999999999999999999997
Q ss_pred CCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcc--------
Q 002787 517 GSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-------- 588 (881)
Q Consensus 517 ~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~-------- 588 (881)
.++. . ...+|.. |-|+|.....|....++ ...+|+++++|+++|++++++|+++|||||||||++.+|
T Consensus 842 ~d~~-~-l~~fdg~-~~y~~~d~~~g~~~~Wg-~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~ 917 (1224)
T PRK14705 842 KDSW-A-LAQFDGQ-PLYEHADPALGEHPDWG-TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSRE 917 (1224)
T ss_pred cchh-h-hhhcCCC-cccccCCcccCCCCCCC-CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccc
Confidence 6432 1 1233432 33444322224332222 234789999999999999999999999999999998776
Q ss_pred ----------------cHHHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 589 ----------------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 589 ----------------~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
..++|+++.+.|++.. +++++++|.+.
T Consensus 918 ~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~--------p~~~~IAEest 960 (1224)
T PRK14705 918 EGQWRPNRFGGRENLEAISFLQEVNATVYKTH--------PGAVMIAEEST 960 (1224)
T ss_pred cccccccccCCccChHHHHHHHHHHHHHHHHC--------CCeEEEEEcCC
Confidence 2456777777777765 57999999775
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=1e-52 Score=497.93 Aligned_cols=312 Identities=19% Similarity=0.233 Sum_probs=239.1
Q ss_pred hhcccCCCCCCccEEeCCeeEEEEEcCCCCeEEEEE-eeCCCCCCCceEEec-ccCCCEEEEEcCC------CCCCcEEE
Q 002787 200 LDELFSYDGPLGALYAEETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPK------SWEGCYYV 271 (881)
Q Consensus 200 lD~ly~~~~~LGa~~~~~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~v~~------~~~G~~Y~ 271 (881)
|++.-..-..||+++.+++++||||||+|++|+|+. |+.|++ ..++| +...|+|++++++ ..+|.+|+
T Consensus 97 l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdFN~W~~----~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yk 172 (758)
T PLN02447 97 LEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDFNNWNP----NAHWMTKNEFGVWEIFLPDADGSPAIPHGSRVK 172 (758)
T ss_pred HHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEecCCCCC----CccCceeCCCCEEEEEECCccccccCCCCCEEE
Confidence 444322234699999999999999999999999984 777653 34688 5678999999998 77899999
Q ss_pred EEEEeecCCCcccceeeecCccccccccC-CC-----cceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccc
Q 002787 272 YEVSVYHPSALQIEKCYANDPYARGLSSD-GR-----RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDF 345 (881)
Q Consensus 272 Y~V~~~~p~~g~~e~~~vtDPYA~~ls~n-g~-----~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdF 345 (881)
|+|+..+ | +...+.||||+....+ +. .|+++|+.. ..++.|... +|. .+.+++|||+||+.|
T Consensus 173 y~i~~~~---g--~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~--~~~y~w~~~---~~~--~~~~~~IYE~Hvg~~ 240 (758)
T PLN02447 173 IRMETPD---G--RWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE--EEKYVFKHP---RPP--RPAALRIYEAHVGMS 240 (758)
T ss_pred EEEEeCC---C--cEEeecCchHheeeccCCccCCCCceEEeCCCC--CCCCCCCCC---CCC--CCCCCEEEEEeCCcc
Confidence 9998531 2 3467899999876654 22 578888753 345678653 332 457899999999988
Q ss_pred cccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccce
Q 002787 346 SVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWI 425 (881)
Q Consensus 346 s~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (881)
+. + ...|+|.+|+++ .|+||++||+||||||||++++.
T Consensus 241 ~~-~-----~~~gty~~~~~~------~L~ylk~LG~t~I~LmPi~e~~~------------------------------ 278 (758)
T PLN02447 241 SE-E-----PKVNSYREFADD------VLPRIKALGYNAVQLMAIQEHAY------------------------------ 278 (758)
T ss_pred cC-C-----CCCCCHHHHHHH------HHHHHHHcCCCEEEECCccccCC------------------------------
Confidence 63 2 235999998763 58889999999999999999853
Q ss_pred eeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCE
Q 002787 426 VCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLH 505 (881)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~Gir 505 (881)
..+|||++.+||+|+++||+ .+|||+||++||++||+
T Consensus 279 ------------------------------------~~~wGY~~~~~fa~~~~~Gt-------p~dlk~LVd~aH~~GI~ 315 (758)
T PLN02447 279 ------------------------------------YGSFGYHVTNFFAVSSRSGT-------PEDLKYLIDKAHSLGLR 315 (758)
T ss_pred ------------------------------------CCCCCcCcccCcccccccCC-------HHHHHHHHHHHHHCCCE
Confidence 25899999999999999998 35899999999999999
Q ss_pred EEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCC
Q 002787 506 VVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (881)
Q Consensus 506 VIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm 585 (881)
||||||+||++.+.... ...+|...+.||+.. ..|.. +......+|+++++|+++|++++++|+++|||||||||++
T Consensus 316 VilDvV~nH~~~~~~~g-l~~fDg~~~~Yf~~~-~~g~~-~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 316 VLMDVVHSHASKNTLDG-LNGFDGTDGSYFHSG-PRGYH-WLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred EEEEecccccccccccc-ccccCCCCccccccC-CCCCc-CcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 99999999998643211 234666555677643 33322 1122234789999999999999999999999999999999
Q ss_pred CcccH--------------------------HHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 586 GHIMK--------------------------STMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 586 ~h~~~--------------------------~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
.+|-. .++..+.+.|+++. ++++++||.+.
T Consensus 393 ~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~--------p~~~~IAEd~s 448 (758)
T PLN02447 393 TSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLY--------PEAVTIAEDVS 448 (758)
T ss_pred hhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhC--------CCeEEEEEcCC
Confidence 87731 24556666666665 57999999764
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-50 Score=466.05 Aligned_cols=311 Identities=26% Similarity=0.427 Sum_probs=231.4
Q ss_pred CCccEEeCC---eeEEEEEcCCCCeEEEE-EeeCCCCCCCceEEec--ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCc
Q 002787 209 PLGALYAEE---TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL--KENDGVWSIKGPKSWEGCYYVYEVSVYHPSAL 282 (881)
Q Consensus 209 ~LGa~~~~~---~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M--~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g 282 (881)
.+||++.+. +|+|+||||+|++|+|+ .|+++++ ..++| +.+.|+|++++++...|..|+|+|...+ |
T Consensus 25 ~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~----~~~~~~~~~~~G~we~~vp~~~~G~~Yky~l~~~~---g 97 (628)
T COG0296 25 KLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDG----RRMPMRDRKESGIWELFVPGAPPGTRYKYELIDPS---G 97 (628)
T ss_pred hhCcccccCCCCceEEEEECCCCCeEEEEeecCCccc----eecccccCCCCceEEEeccCCCCCCeEEEEEeCCC---C
Confidence 688888643 69999999999999999 5777765 56666 4478999999999999999999998532 3
Q ss_pred ccceeeecCccccccccC-CCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccc
Q 002787 283 QIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYL 361 (881)
Q Consensus 283 ~~e~~~vtDPYA~~ls~n-g~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~ 361 (881)
....++||||+..... ...|+|+|+.++.|+++.| .. ......+++++|||+||..|+. + ...|+|.
T Consensus 98 --~~~~~~DP~a~~~~~~p~~aS~v~~~~~y~W~d~~~-~~---~~~~~~~e~~vIYElHvGs~~~-~-----~~~~~~e 165 (628)
T COG0296 98 --QLRLKADPYARRQEVGPHTASQVVDLPDYEWQDERW-DR---AWRGRFWEPIVIYELHVGSFTP-D-----RFLGYFE 165 (628)
T ss_pred --ceeeccCchhhccCCCCCCcceecCCCCcccccccc-cc---cccCCCCCCceEEEEEeeeccC-C-----CCcCHHH
Confidence 2468999999988654 3579999997789999988 32 1222356799999999999986 1 2346776
Q ss_pred cccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhh
Q 002787 362 AFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLE 441 (881)
Q Consensus 362 g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 441 (881)
+.. ++|+|||+||||||+||||.+++.
T Consensus 166 ~a~-------~llpYl~elG~T~IELMPv~e~p~---------------------------------------------- 192 (628)
T COG0296 166 LAI-------ELLPYLKELGITHIELMPVAEHPG---------------------------------------------- 192 (628)
T ss_pred HHH-------HHhHHHHHhCCCEEEEcccccCCC----------------------------------------------
Confidence 554 569999999999999999999974
Q ss_pred cCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCC
Q 002787 442 KLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521 (881)
Q Consensus 442 ~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~ 521 (881)
..+|||++..||||..+||+ | ++||+||++||++||.||||+||||+..++..
T Consensus 193 --------------------~~sWGYq~~g~yAp~sryGt-P------edfk~fVD~aH~~GIgViLD~V~~HF~~d~~~ 245 (628)
T COG0296 193 --------------------DRSWGYQGTGYYAPTSRYGT-P------EDFKALVDAAHQAGIGVILDWVPNHFPPDGNY 245 (628)
T ss_pred --------------------CCCCCCCcceeccccccCCC-H------HHHHHHHHHHHHcCCEEEEEecCCcCCCCcch
Confidence 36999999999999999999 4 47999999999999999999999999765431
Q ss_pred CCCCccCCCCCCCceecCCC-CccccCCCCCCC-CCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHH-------
Q 002787 522 DDNSVLDKVVPGYYLRRNSD-GFIEHSTCMNNT-ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKST------- 592 (881)
Q Consensus 522 ~~~s~lDk~vP~YY~r~~~~-G~~~~stc~~d~-a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~------- 592 (881)
...+|.. + +|...++. |.- .....-+ +..+++||+||++++.+|+++|||||||+|++..|....
T Consensus 246 --L~~fdg~-~-~~e~~~~~~~~~--~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~ 319 (628)
T COG0296 246 --LARFDGT-F-LYEHEDPRRGEH--TDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGE 319 (628)
T ss_pred --hhhcCCc-c-ccccCCcccccC--CCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhc
Confidence 2334432 1 22211221 211 1111222 333899999999999999999999999999998774331
Q ss_pred ----------HHHHHHHHHhccccccCCCCCceEEEeccCCCc
Q 002787 593 ----------MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFG 625 (881)
Q Consensus 593 ----------~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~g 625 (881)
..++.+.++..+.-.... .+.++.++|-|+..
T Consensus 320 ~~~n~~ggr~n~~a~efl~~~n~~i~~~-~pg~~~iaeestd~ 361 (628)
T COG0296 320 WVPNEYGGRENLEAAEFLRNLNSLIHEE-EPGAMTIAEESTDD 361 (628)
T ss_pred ccccccCCcccHHHHHHhhhhhhhhccc-CCCceeeeeeccCC
Confidence 223444444444322211 25678899988643
No 19
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.5e-48 Score=460.82 Aligned_cols=433 Identities=16% Similarity=0.194 Sum_probs=276.6
Q ss_pred EeCCeeEEEEEcCC---CCeEEEEEeeCCCCCCCceEEecc--c---CCCEEEEEcCCC--CCCcEEEEEEEeecCCCcc
Q 002787 214 YAEETVSLYLWAPT---AQSVSACIYRDPLGGNPLEVVQLK--E---NDGVWSIKGPKS--WEGCYYVYEVSVYHPSALQ 283 (881)
Q Consensus 214 ~~~~~v~F~vWAPt---A~~V~L~ly~~~~~~~~~~~~~M~--~---~~GvWsv~v~~~--~~G~~Y~Y~V~~~~p~~g~ 283 (881)
+.++.+++||+.+. .++|.|....+.. ...++|. . ...+|+++++.. .....|.|+|... +
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~----~- 86 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDNE----EYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWH----D- 86 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCCC----EEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeC----C-
Confidence 46788999999874 3577776432221 2467772 2 224699998743 3446799988531 1
Q ss_pred cceeeecCccccccccCCCcceEeeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCC---------
Q 002787 284 IEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHP--------- 354 (881)
Q Consensus 284 ~e~~~vtDPYA~~ls~ng~~S~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~--------- 354 (881)
+.... ...|.... ... + .....+... ...|. -..+.|||++.+++|..++++...
T Consensus 87 -~~~~~--------~~~g~~~~-~~~-~--~~~f~~~~~-~~~P~--W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~ 150 (598)
T PRK10785 87 -RQRWF--------TPQGFSRR-PPA-R--LEQFAVDVP-DQGPQ--WVADQVFYQIFPDRFARSLPREAVQDHVYYHHA 150 (598)
T ss_pred -EEEEE--------cCCceeec-cCC-C--ccceEeeCC-CCCCc--hhhcCEEEEechhhhcCCCcccCccCCceeecc
Confidence 11111 10110000 000 0 000011000 02221 127899999999999877653210
Q ss_pred ----------------------CCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCc
Q 002787 355 ----------------------DFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (881)
Q Consensus 355 ----------------------~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~ 412 (881)
-+.|++.|+++ +|+||++||||+|||+|||+..
T Consensus 151 ~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~-------kLdYL~~LGv~~I~L~Pif~s~------------------ 205 (598)
T PRK10785 151 AGQEIILRDWDEPVTAQAGGSTFYGGDLDGISE-------KLPYLKKLGVTALYLNPIFTAP------------------ 205 (598)
T ss_pred CCCcccccCcCCCcccccccccccCcCHHHHHH-------HHHHHHHcCCCEEEeCCcccCC------------------
Confidence 12578887765 4999999999999999999864
Q ss_pred cccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHH
Q 002787 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (881)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Ef 492 (881)
.|||||+.+|++++++||+. ++|
T Consensus 206 --------------------------------------------------s~hgYd~~Dy~~iDp~~Gt~-------~df 228 (598)
T PRK10785 206 --------------------------------------------------SVHKYDTEDYRHVDPQLGGD-------AAL 228 (598)
T ss_pred --------------------------------------------------CCCCcCcccccccCcccCCH-------HHH
Confidence 38999999999999999994 579
Q ss_pred HHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCc-------cCCCCC--CCceecCCCCccccCC---CCCCCCCCChHH
Q 002787 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSV-------LDKVVP--GYYLRRNSDGFIEHST---CMNNTASEHYMV 560 (881)
Q Consensus 493 r~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~-------lDk~vP--~YY~r~~~~G~~~~st---c~~d~a~e~~mv 560 (881)
|+||++||++||+||||+|+|||+..++|+.... .+...| .||+..+ +|.+..+. ..+++|++|++|
T Consensus 229 ~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~-~~~~~~w~g~~~lPdLN~~np~v 307 (598)
T PRK10785 229 LRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSD-DGRALDWLGYASLPKLDFQSEEV 307 (598)
T ss_pred HHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECC-CCCcCCcCCCCcCccccCCCHHH
Confidence 9999999999999999999999998877653221 111112 3555433 34444333 356899999999
Q ss_pred HHHHHH----HHHHHHHh-CCceEEEEcCCCccc--------HHHHHHHHHHHHhccccccCCCCCceEEEeccCCCccc
Q 002787 561 ERLIID----DLLCWAVN-YKVDGFRFDLMGHIM--------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEV 627 (881)
Q Consensus 561 ~k~i~D----sl~~W~~e-ygIDGFRfDlm~h~~--------~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev 627 (881)
+++|++ ++++|+++ |||||||+|++.+++ .++|+++++++++.+| +++++||.|.....
T Consensus 308 ~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~p--------d~~ligE~~~~~~~ 379 (598)
T PRK10785 308 VNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENP--------EAYVLGEHFGDARQ 379 (598)
T ss_pred HHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCC--------CeEEEEeccCChhh
Confidence 999995 79999997 999999999998884 4799999999999884 68999999964320
Q ss_pred ccccCCCccccccCCCCcceecc-----hHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHH
Q 002787 628 AKNGRGVNASQFNLSGTGIGSFN-----DRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQ 702 (881)
Q Consensus 628 ~~~~~~~~a~Q~n~~gtgig~fn-----Dr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~ 702 (881)
..+..+ .-+.+| ..+|+.+.+.. + .|..+ ..+.......|....
T Consensus 380 -----~l~~~~------~d~~mny~~f~~~~~~~~~~~~-~------~~~~~---------~~~~~~~~~~l~~~~---- 428 (598)
T PRK10785 380 -----WLQADV------EDAAMNYRGFAFPLRAFLANTD-I------AYHPQ---------QIDAQTCAAWMDEYR---- 428 (598)
T ss_pred -----hccCcc------ccccccchhhhhHHHHHhhccc-c------ccCcc---------CCCHHHHHHHHHHHH----
Confidence 001111 113333 23444333210 0 00000 011122211111100
Q ss_pred hhhcccchhhhccccCCcccccCcccccCCCCccccCCCCccEEeeeccccchhhhhhcCC---------------Ceee
Q 002787 703 VGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK---------------GIPF 767 (881)
Q Consensus 703 ~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~~k---------------GiPf 767 (881)
. .|.. ..-...+||++|||+.|+...+... |||+
T Consensus 429 -------~------------------~~~~------~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~ 477 (598)
T PRK10785 429 -------A------------------GLPH------QQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPC 477 (598)
T ss_pred -------H------------------hCCH------HHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcE
Confidence 0 0100 0001247999999999987765322 9999
Q ss_pred EecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHH
Q 002787 768 FHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVL 847 (881)
Q Consensus 768 iy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll 847 (881)
||||||+|+++. .|+++ +..|+|+... |+ .+++++||+||
T Consensus 478 IYYGdE~G~~g~--~dp~~----R~~m~W~~~~----------------~~------------------~~l~~~~r~Li 517 (598)
T PRK10785 478 IYYGDEVGLDGG--NDPFC----RKPFPWDEAK----------------QD------------------GALLALYQRMI 517 (598)
T ss_pred EEeeeeccccCC--CCCCc----cCCcCCCccc----------------Cc------------------hHHHHHHHHHH
Confidence 999999999854 34444 3456776421 11 37899999999
Q ss_pred HHHhcCcccccCCHHHH
Q 002787 848 RIRYSSPLFRLRTANAI 864 (881)
Q Consensus 848 ~lRkssp~lrlgt~~~I 864 (881)
+|||++|+|+.|+.+.+
T Consensus 518 ~lRk~~~aL~~G~~~~l 534 (598)
T PRK10785 518 ALRKKSQALRRGGCQVL 534 (598)
T ss_pred HHHhhCcccccCcEEEE
Confidence 99999999999987655
No 20
>PLN02960 alpha-amylase
Probab=100.00 E-value=6.1e-47 Score=448.81 Aligned_cols=270 Identities=19% Similarity=0.258 Sum_probs=203.4
Q ss_pred EEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceeeecCcccccc--ccCCCcceEeeCCCCCCCCCcccccc
Q 002787 247 VVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGL--SSDGRRTLLVNLDSDTLKPEGWDKLV 323 (881)
Q Consensus 247 ~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA~~l--s~ng~~S~vvDl~~~~~~P~~W~~~~ 323 (881)
-+.| +...|.|+..+++..+|.+|+|+|+... + +..+.||||+.+ ..++.++.+|+.+.....++.|...
T Consensus 316 ~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~---g---~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~- 388 (897)
T PLN02960 316 WEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPD---G---PLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFE- 388 (897)
T ss_pred eeeeeecCCcEEEEEccCCCCCCEEEEEEEeCC---C---ceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCC-
Confidence 3567 6678999999999999999999997521 2 245789999988 4556655566654332346788653
Q ss_pred cCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccc
Q 002787 324 YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENW 403 (881)
Q Consensus 324 ~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~ 403 (881)
+|. .+++++|||+||+.|+.. ...|||.+++++ .|+||++|||||||||||+++..
T Consensus 389 --~p~--~~~~~vIYElHvg~~~~e------~~~gtf~~~~e~------~LdYLk~LGvt~IeLmPv~e~~~-------- 444 (897)
T PLN02960 389 --RPK--VPKSLRIYECHVGISGSE------PKISSFKEFTQK------VLPHVKKAGYNAIQLIGVQEHKD-------- 444 (897)
T ss_pred --CCC--CCCCcEEEEEecccccCC------CCCCCHHHHHHH------HHHHHHHcCCCEEEECCcccCCC--------
Confidence 343 457899999999988632 235999999864 48888999999999999998752
Q ss_pred cccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCC
Q 002787 404 KSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483 (881)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~ 483 (881)
..+|||++.+||+|+++|||
T Consensus 445 ----------------------------------------------------------~~swGY~~~~yfa~~~~yGt-- 464 (897)
T PLN02960 445 ----------------------------------------------------------YSSVGYKVTNFFAVSSRFGT-- 464 (897)
T ss_pred ----------------------------------------------------------CCCCCCCcccCCCcccccCC--
Confidence 25899999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHH
Q 002787 484 NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERL 563 (881)
Q Consensus 484 dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~ 563 (881)
.+|||+||++||++||+|||||||||++.+.+.. ...+|.....||+. +..|....+ .+..+|..+++|+++
T Consensus 465 -----p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~-L~~FDG~~~~Yf~~-~~~g~~~~W-G~~~fNy~~~eVr~f 536 (897)
T PLN02960 465 -----PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSNDCYFHS-GKRGHHKRW-GTRMFKYGDHEVLHF 536 (897)
T ss_pred -----HHHHHHHHHHHHHCCCEEEEEecccccCCccccc-hhhcCCCccceeec-CCCCccCCC-CCcccCCCCHHHHHH
Confidence 3589999999999999999999999998763321 23456543345553 333433333 345679999999999
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCccc-------------------------HHHHHHHHHHHHhccccccCCCCCceEEE
Q 002787 564 IIDDLLCWAVNYKVDGFRFDLMGHIM-------------------------KSTMMKAKHALHSLTKEIHGVDGSSIYIY 618 (881)
Q Consensus 564 i~Dsl~~W~~eygIDGFRfDlm~h~~-------------------------~~~~~~~~~~l~~i~pe~~~~~g~~~~l~ 618 (881)
|++++++|++||||||||||++..|. ..+++.+.+.|++.. +++++|
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~--------P~vilI 608 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLH--------PNIITI 608 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhC--------CCeEEE
Confidence 99999999999999999999986642 123444555555444 679999
Q ss_pred eccCC
Q 002787 619 GEGWD 623 (881)
Q Consensus 619 GE~Wd 623 (881)
+|-+.
T Consensus 609 AEdss 613 (897)
T PLN02960 609 AEDAT 613 (897)
T ss_pred EECCC
Confidence 99663
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=5e-45 Score=426.71 Aligned_cols=198 Identities=21% Similarity=0.336 Sum_probs=160.5
Q ss_pred CCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCC
Q 002787 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (881)
Q Consensus 332 ~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~ 411 (881)
+++.||||++||+|..++.. ..|+|.|++++ |+||++||||+|||+|||+..+
T Consensus 3 ~~~~viYqi~~~~f~d~~~~----~~Gdl~gi~~~-------Ldyl~~LGv~~i~L~Pi~~~~~---------------- 55 (539)
T TIGR02456 3 YKDAVFYEVHVRSFFDSNGD----GIGDFPGLTSK-------LDYLKWLGVDALWLLPFFQSPL---------------- 55 (539)
T ss_pred cccceEEEEehhHhhcCCCC----CccCHHHHHHh-------HHHHHHCCCCEEEECCCcCCCC----------------
Confidence 46899999999999976543 26999999775 9999999999999999997642
Q ss_pred ccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHH
Q 002787 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (881)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~E 491 (881)
.+|||++.+|+++++.||+ .++
T Consensus 56 ---------------------------------------------------~~~gY~~~dy~~vd~~~Gt-------~~d 77 (539)
T TIGR02456 56 ---------------------------------------------------RDDGYDVSDYRAILPEFGT-------IDD 77 (539)
T ss_pred ---------------------------------------------------CCCCCCcccccccChhhCC-------HHH
Confidence 4799999999999999999 468
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCcc--CCCCCCCceecCCCCccc------------c-----------
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPGYYLRRNSDGFIE------------H----------- 546 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~l--Dk~vP~YY~r~~~~G~~~------------~----------- 546 (881)
||+||++||++||+||||+|+|||+..++|...+.- +...+.||++.+....+. +
T Consensus 78 f~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y 157 (539)
T TIGR02456 78 FKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYY 157 (539)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeE
Confidence 999999999999999999999999988776532211 222346666533211100 0
Q ss_pred ----CCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcc-------------cHHHHHHHHHHHHhccccccC
Q 002787 547 ----STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-------------MKSTMMKAKHALHSLTKEIHG 609 (881)
Q Consensus 547 ----stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~-------------~~~~~~~~~~~l~~i~pe~~~ 609 (881)
..+.+++|++|++|+++|++++++|++ +||||||||+++|+ ..++|+++++.+++..
T Consensus 158 ~~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~----- 231 (539)
T TIGR02456 158 WHRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREY----- 231 (539)
T ss_pred EecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhC-----
Confidence 124578999999999999999999996 89999999999887 3578999999999887
Q ss_pred CCCCceEEEeccCC
Q 002787 610 VDGSSIYIYGEGWD 623 (881)
Q Consensus 610 ~~g~~~~l~GE~Wd 623 (881)
++++++||.|.
T Consensus 232 ---p~~~~iaE~~~ 242 (539)
T TIGR02456 232 ---PGRMLLAEANQ 242 (539)
T ss_pred ---CCeEEEEEeCC
Confidence 46899999764
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.2e-44 Score=423.59 Aligned_cols=372 Identities=15% Similarity=0.205 Sum_probs=245.8
Q ss_pred CCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCC
Q 002787 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (881)
Q Consensus 332 ~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~ 411 (881)
+++.||||+|+|.|+.++.. ..|+|.|++++ |+||++||||+|||+|+|+..+
T Consensus 2 ~~~~v~Y~i~~~~f~~~~~~----~~G~~~gi~~~-------l~yl~~lG~~~i~l~Pi~~~~~---------------- 54 (543)
T TIGR02403 2 WQKKVIYQIYPKSFYDSTGD----GTGDLRGIIEK-------LDYLKKLGVDYIWLNPFYVSPQ---------------- 54 (543)
T ss_pred cccCEEEEEEhHHHhcCCCC----CccCHHHHHHh-------HHHHHHcCCCEEEECCcccCCC----------------
Confidence 46789999999999875543 25999999765 9999999999999999998642
Q ss_pred ccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHH
Q 002787 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (881)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~E 491 (881)
..+||++.+|+.+++.||| .++
T Consensus 55 ---------------------------------------------------~~~gY~~~d~~~id~~~Gt-------~~~ 76 (543)
T TIGR02403 55 ---------------------------------------------------KDNGYDVSDYYAINPLFGT-------MAD 76 (543)
T ss_pred ---------------------------------------------------CCCCCCccccCccCcccCC-------HHH
Confidence 3579999999999999999 468
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCcc-CCCCCCCceecCCCCccc-c-----------------------
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-DKVVPGYYLRRNSDGFIE-H----------------------- 546 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~l-Dk~vP~YY~r~~~~G~~~-~----------------------- 546 (881)
||+||++||++||+||||+|+|||+.+++|...+.- +.....||.+.+..|... +
T Consensus 77 ~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 156 (543)
T TIGR02403 77 FEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHL 156 (543)
T ss_pred HHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEec
Confidence 999999999999999999999999988877542211 111124555443222100 0
Q ss_pred -CCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccH-----------------------HHHHHHHHHHHh
Q 002787 547 -STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-----------------------STMMKAKHALHS 602 (881)
Q Consensus 547 -stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~-----------------------~~~~~~~~~l~~ 602 (881)
..+.+++|++||.|+++|++++++|++ +||||||||+++|+++ ++|+++++.+++
T Consensus 157 f~~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 157 FDKTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred cCCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 013578999999999999999999996 6999999999999963 367777777665
Q ss_pred ccccccCCCCCceEEEeccCCCcccccccCCCccccccCCCCcc-eecchHHHHHhcCCCCCCCCcccccccccccCCCC
Q 002787 603 LTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGI-GSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNG 681 (881)
Q Consensus 603 i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~~~~a~Q~n~~gtgi-g~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~ 681 (881)
. ++++++||.|.... ....++. ...+..+ +.||.. ..+.. +..+.....
T Consensus 236 -~--------~~~~lvgE~~~~~~-~~~~~y~-----~~~~~~~d~~~nf~--~~~~~-----------~~~~~~~~~-- 285 (543)
T TIGR02403 236 -D--------NDSVTVGEMSSTTI-ENCIRYS-----NPENKELSMVFTFH--HLKVD-----------YPNGEKWTL-- 285 (543)
T ss_pred -c--------CCeEEEEEeCCCCH-HHHHhhh-----CCCCCeeCeEEChh--hhhch-----------hcccccccc--
Confidence 4 46999999996321 1001110 0001111 234432 11111 000000000
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccccCcccccCCCCccccCCCCccEEeeeccccchhhhhhc
Q 002787 682 HDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVS 761 (881)
Q Consensus 682 ~~~g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~ 761 (881)
...........+.. . .. .+.....-..+|++|||+.|+...+.
T Consensus 286 -~~~~~~~l~~~~~~----~-------~~-------------------------~~~~~~~~~~~fl~NHD~~R~~s~~g 328 (543)
T TIGR02403 286 -AKFDFAKLKEIFST----W-------QT-------------------------GMQAGGGWNALFWNNHDQPRAVSRFG 328 (543)
T ss_pred -CCCCHHHHHHHHHH----H-------HH-------------------------hccccCcceeeecCCCChhhHHHhcC
Confidence 00011111111100 0 00 00011223368999999998775442
Q ss_pred -------------------CCCeeeEecCccccccCCCC----------------------CCC---------CCCCCCc
Q 002787 762 -------------------LKGIPFFHCGDEILRSKSLD----------------------RDS---------YNSGDWL 791 (881)
Q Consensus 762 -------------------~kGiPfiy~GdE~grSksgd----------------------~ds---------Y~sgDw~ 791 (881)
..|+||||||+|+||++... .++ ..+.+-+
T Consensus 329 ~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~R 408 (543)
T TIGR02403 329 DDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSR 408 (543)
T ss_pred CchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCc
Confidence 12999999999999986311 000 0112345
Q ss_pred ccccCCCCCC-CCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCCHHHH
Q 002787 792 NRIDFSYNSN-NWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAI 864 (881)
Q Consensus 792 N~~dw~~~~n-n~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lRkssp~lrlgt~~~I 864 (881)
.+|.|+...| +|.. ...|..+.+.....+++.+.++..+++++||+||+|||++|+|+.|+.+.+
T Consensus 409 tPm~W~~~~~aGFs~--------~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~ 474 (543)
T TIGR02403 409 TPMQWNNEKNAGFTT--------GKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFL 474 (543)
T ss_pred cccccCCCCCCCCCC--------CCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEe
Confidence 6899986554 3432 345665555555666777777788999999999999999999999987655
No 23
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=3e-44 Score=425.97 Aligned_cols=361 Identities=18% Similarity=0.267 Sum_probs=227.2
Q ss_pred CCCCCceEEEEEcccccccCCCCCC--------------CCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCC
Q 002787 330 LSFSDISIYELHVRDFSVSDHTVHP--------------DFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAG 395 (881)
Q Consensus 330 ~~~~d~vIYElHVRdFs~~d~s~~~--------------~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~t 395 (881)
..|.+.|||++.+++|..+|++... -+.|+++|++++ |+||++||||+|||+|+++...
T Consensus 185 ~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-------Ldyl~~LGv~aIwlsPi~~~~~ 257 (683)
T PRK09505 185 FDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-------LDYLQQLGVNALWISSPLEQIH 257 (683)
T ss_pred hhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-------hHHHHHcCCCEEEeCccccccc
Confidence 3567889999999999877743211 134777777665 9999999999999999998642
Q ss_pred CCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCc
Q 002787 396 VDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVP 475 (881)
Q Consensus 396 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ap 475 (881)
....... -..++ ...+|||++.+|+.+
T Consensus 258 ~~~~~g~-------------------------------------~g~~~----------------~~~yhgY~~~D~~~i 284 (683)
T PRK09505 258 GWVGGGT-------------------------------------KGDFP----------------HYAYHGYYTLDWTKL 284 (683)
T ss_pred ccccccc-------------------------------------ccCCC----------------cCCCCCCCccccccC
Confidence 1000000 00000 025899999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCC-----CCcc------CCCCCC-----------
Q 002787 476 KGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD-----NSVL------DKVVPG----------- 533 (881)
Q Consensus 476 e~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~-----~s~l------Dk~vP~----------- 533 (881)
+++||+ .+|||+||++||++||+||||+|+||++.....+. ..++ .+..|.
T Consensus 285 d~~~Gt-------~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~ 357 (683)
T PRK09505 285 DANMGT-------EADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQ 357 (683)
T ss_pred CCCCCC-------HHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccc
Confidence 999999 46899999999999999999999999984311000 0000 000111
Q ss_pred CceecC----C--CCccccC-------------------------CCCCCCCCC-----------------------ChH
Q 002787 534 YYLRRN----S--DGFIEHS-------------------------TCMNNTASE-----------------------HYM 559 (881)
Q Consensus 534 YY~r~~----~--~G~~~~s-------------------------tc~~d~a~e-----------------------~~m 559 (881)
+||..+ . ...++.+ ...++++++ |+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~ 437 (683)
T PRK09505 358 NWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYT 437 (683)
T ss_pred cccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHH
Confidence 111110 0 0111110 123445554 569
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHH-------hccccccCCCCCceEEEeccCCCcccccccC
Q 002787 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALH-------SLTKEIHGVDGSSIYIYGEGWDFGEVAKNGR 632 (881)
Q Consensus 560 v~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~-------~i~pe~~~~~g~~~~l~GE~Wd~gev~~~~~ 632 (881)
|+++|++++++|+++|||||||+|+++|++.++|++++..++ +.+++. ..+.++++++||.|..+... ..
T Consensus 438 Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~-~~~~~~~~~vGEvw~~~~~~--~~ 514 (683)
T PRK09505 438 PRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDK-ALDDAPFWMTGEAWGHGVMK--SD 514 (683)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhcccc-ccccCCeEEEEEecCCchhh--HH
Confidence 999999999999999999999999999999999998877763 444321 11234699999999654311 00
Q ss_pred CCccccccCCCCcc-eecchHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHHHhhhcccchh
Q 002787 633 GVNASQFNLSGTGI-GSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRD 711 (881)
Q Consensus 633 ~~~a~Q~n~~gtgi-g~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnL~d 711 (881)
. .+ .++ +.||..++++++.. + ..+... +.+ ..+
T Consensus 515 y---~~-----~~fDsv~NF~~~~~~~~~--~----------------------------~~~~~l-~~~-------~~~ 548 (683)
T PRK09505 515 Y---YR-----HGFDAMINFDYQEQAAKA--V----------------------------DCLAQM-DPT-------YQQ 548 (683)
T ss_pred H---Hh-----hcCccccCchHHHHHHHH--H----------------------------HHHHHH-HHH-------HHH
Confidence 0 01 111 45666666554420 0 000000 000 000
Q ss_pred hhccccCCcccccCcccccCCCCccccCCCCccEEeeeccccchhhhhhcC--------------CCeeeEecCcccccc
Q 002787 712 FQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSL--------------KGIPFFHCGDEILRS 777 (881)
Q Consensus 712 ~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~~--------------kGiPfiy~GdE~grS 777 (881)
+. . . ..+...+||++|||+.|+.+.... .|+|+||||+|++|+
T Consensus 549 ~~------------~--~---------~~~~~~l~FLdNHDt~Rf~s~~~~~~~~klAaall~tlpGiP~IYYGdEiGm~ 605 (683)
T PRK09505 549 MA------------E--K---------LQDFNVLSYLSSHDTRLFFEGGQSYAKQRRAAELLLLAPGAVQIYYGDESARP 605 (683)
T ss_pred Hh------------h--h---------cCccceeecccCCChhhhhhhcCchHHHHHHHHHHHhCCCCcEEEechhhCcc
Confidence 00 0 0 022245899999999998664431 299999999999997
Q ss_pred CCC-CCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q 002787 778 KSL-DRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLF 856 (881)
Q Consensus 778 ksg-d~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lRkssp~l 856 (881)
+.. ..|++ .+-+..|+|+... .+..+++++||+|++||++||+|
T Consensus 606 gg~~g~DP~--~~~R~~M~W~~~~---------------------------------~~~~~Ll~~~kkLi~LRk~~pAL 650 (683)
T PRK09505 606 FGPTGSDPL--QGTRSDMNWQEVS---------------------------------GKSAALLAHWQKLGQFRARHPAI 650 (683)
T ss_pred CCCCCCCCc--ccccccCCccccc---------------------------------cchHHHHHHHHHHHHHHhhCHHh
Confidence 532 12222 1123345564310 11247899999999999999999
Q ss_pred ccCCHHHH
Q 002787 857 RLRTANAI 864 (881)
Q Consensus 857 rlgt~~~I 864 (881)
+.|+.+.|
T Consensus 651 ~~G~~~~l 658 (683)
T PRK09505 651 GAGKQTTL 658 (683)
T ss_pred hCCceEEe
Confidence 99987655
No 24
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.7e-44 Score=419.61 Aligned_cols=377 Identities=16% Similarity=0.284 Sum_probs=246.7
Q ss_pred CCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCC
Q 002787 331 SFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLP 410 (881)
Q Consensus 331 ~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~ 410 (881)
-+++.||||+++|.|..++.+. .|+++|++++ |+||++||||+|||+|+++...
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~~----~Gdl~gi~~~-------ldyl~~lGv~~i~l~P~~~~~~--------------- 60 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGSG----TGDLRGVTQR-------LDYLQKLGVDAIWLTPFYVSPQ--------------- 60 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCCC----CcCHHHHHHh-------hHHHHhCCCCEEEECCCCCCCC---------------
Confidence 3578999999999998765432 5999998765 9999999999999999986532
Q ss_pred CccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHH
Q 002787 411 GLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTI 490 (881)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~ 490 (881)
.+|||++.+|+.++++||| .+
T Consensus 61 ----------------------------------------------------~~~gY~~~d~~~id~~~Gt-------~~ 81 (551)
T PRK10933 61 ----------------------------------------------------VDNGYDVANYTAIDPTYGT-------LD 81 (551)
T ss_pred ----------------------------------------------------CCCCCCcccCCCcCcccCC-------HH
Confidence 3689999999999999999 45
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCC--CCceecCC------CCccc--------c--------
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVP--GYYLRRNS------DGFIE--------H-------- 546 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP--~YY~r~~~------~G~~~--------~-------- 546 (881)
+|++||++||++||+||||+|+|||+..++|...+ .++..| .||.+.+. ..... .
T Consensus 82 d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~-~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y 160 (551)
T PRK10933 82 DFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREA-LNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY 160 (551)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhh-cCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceE
Confidence 89999999999999999999999999988886543 333333 35543321 00000 0
Q ss_pred ----CCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHH--HH--------------HHHHHHHHhcccc
Q 002787 547 ----STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKS--TM--------------MKAKHALHSLTKE 606 (881)
Q Consensus 547 ----stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~--~~--------------~~~~~~l~~i~pe 606 (881)
....+++|++||+|+++|++++++|+ ++||||||+|+++|+++. ++ .++.+.++++.+.
T Consensus 161 ~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 161 LHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRD 239 (551)
T ss_pred eecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHH
Confidence 01357999999999999999999999 589999999999999863 11 1234444444432
Q ss_pred ccCCCCCceEEEeccCCCcc--cccccCCCccccccCCCCcceecchHHHHHhcCCCCCCCCcccccccccccCCCCCCC
Q 002787 607 IHGVDGSSIYIYGEGWDFGE--VAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDH 684 (881)
Q Consensus 607 ~~~~~g~~~~l~GE~Wd~ge--v~~~~~~~~a~Q~n~~gtgig~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~ 684 (881)
. ...++++++||.|.... +..... ..+.+.+ ..||.. ..+.. +..|.... ...
T Consensus 240 ~--~~~~~~~~vgE~~~~~~~~~~~y~~-~~~~~~~------~~fnf~--~~~~~-----------~~~~~~~~---~~~ 294 (551)
T PRK10933 240 V--FTPRGLMTVGEMSSTSLEHCQRYAA-LTGSELS------MTFNFH--HLKVD-----------YPNGEKWT---LAK 294 (551)
T ss_pred h--hcccCcEEEEeecCCCHHHHHHhhc-ccCCeee------eEecHH--Hhhhh-----------hccCCccc---ccc
Confidence 1 11245899999985321 111000 0111111 234442 11111 11110000 000
Q ss_pred CChHHHHHHHHHHHHHHHhhhcccchhhhccccCCcccccCcccccCCCCccccCCCCccEEeeeccccchhhhhhc---
Q 002787 685 GTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVS--- 761 (881)
Q Consensus 685 g~~~~~~~~l~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~--- 761 (881)
......+..+...+ .++ ....-..+|++|||..|+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~----~~~---------------------------------~~~~~~~~fl~NHD~~R~~sr~g~~~ 337 (551)
T PRK10933 295 PDFVALKTLFRHWQ----QGM---------------------------------HNVAWNALFWCNHDQPRIVSRFGDEG 337 (551)
T ss_pred cCHHHHHHHHHHHH----Hhh---------------------------------cccCeeccccCCCCcccHHHHcCCch
Confidence 00111111111100 000 01123367999999988776552
Q ss_pred ----------------CCCeeeEecCccccccCCCC------C-----CCC-------------------CCCC-Ccccc
Q 002787 762 ----------------LKGIPFFHCGDEILRSKSLD------R-----DSY-------------------NSGD-WLNRI 794 (881)
Q Consensus 762 ----------------~kGiPfiy~GdE~grSksgd------~-----dsY-------------------~sgD-w~N~~ 794 (881)
..|+||||||+|+|+++..- + +-| .+.| -+.+|
T Consensus 338 ~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPM 417 (551)
T PRK10933 338 EYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPM 417 (551)
T ss_pred hHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCcccc
Confidence 22999999999999987310 0 000 0111 36678
Q ss_pred cCCCCCC-CCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCCHHHH
Q 002787 795 DFSYNSN-NWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAI 864 (881)
Q Consensus 795 dw~~~~n-n~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lRkssp~lrlgt~~~I 864 (881)
.|+...| +|..+ ..|..+.+.....+++.+.++..+++++||+||+|||++|+|+.|+.+.+
T Consensus 418 qW~~~~~~GFs~~--------~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~ 480 (551)
T PRK10933 418 QWDNGDNAGFTQG--------EPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDL 480 (551)
T ss_pred ccCCCCCCCCCCC--------CCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEe
Confidence 9986554 34333 46776666666777888888888999999999999999999999998765
No 25
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=5.6e-40 Score=350.80 Aligned_cols=178 Identities=26% Similarity=0.447 Sum_probs=145.4
Q ss_pred cccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhh
Q 002787 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (881)
Q Consensus 358 G~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (881)
|+|.|+++| |+||++||||+|||+||++...
T Consensus 1 Gd~~gi~~k-------Ldyl~~lGv~~I~l~Pi~~~~~------------------------------------------ 31 (316)
T PF00128_consen 1 GDFRGIIDK-------LDYLKDLGVNAIWLSPIFESPN------------------------------------------ 31 (316)
T ss_dssp SSHHHHHHT-------HHHHHHHTESEEEESS-EESSS------------------------------------------
T ss_pred CCHHHHHHh-------hHHHHHcCCCceeccccccccc------------------------------------------
Confidence 788888765 9999999999999999998431
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCC
Q 002787 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (881)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~ 517 (881)
.+|||+|.+|++++++||| .+|||+||++||++||+||||+|+||++.
T Consensus 32 -------------------------~~~gY~~~d~~~vd~~~Gt-------~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 32 -------------------------GYHGYDPSDYYAVDPRFGT-------MEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp -------------------------STTTTSESEEEEESTTTBH-------HHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred -------------------------ccccccceeeeccccccch-------hhhhhhhhhccccccceEEEeeecccccc
Confidence 5899999999999999999 56899999999999999999999999998
Q ss_pred CCCCCCC--CccCCCCCCCceecCC----CCc---------cc---------cCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 002787 518 SGPFDDN--SVLDKVVPGYYLRRNS----DGF---------IE---------HSTCMNNTASEHYMVERLIIDDLLCWAV 573 (881)
Q Consensus 518 ~g~~~~~--s~lDk~vP~YY~r~~~----~G~---------~~---------~stc~~d~a~e~~mv~k~i~Dsl~~W~~ 573 (881)
.++|... ...+...+.||.+.+. .+. +. ....++++|++|++|+++|++++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~ 159 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE 159 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh
Confidence 8776321 1123334567765421 111 11 1234568899999999999999999997
Q ss_pred hCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccCCCc
Q 002787 574 NYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFG 625 (881)
Q Consensus 574 eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~g 625 (881)
+ +|||||||+++++++++|.+++.++++.. ++++++||.|...
T Consensus 160 ~-giDGfR~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~E~~~~~ 202 (316)
T PF00128_consen 160 E-GIDGFRLDAAKHIPKEFWKEFRDEVKEEK--------PDFFLIGEVWGGD 202 (316)
T ss_dssp T-TESEEEETTGGGSSHHHHHHHHHHHHHHH--------TTSEEEEEESSSS
T ss_pred c-eEeEEEEccccccchhhHHHHhhhhhhhc--------cccceeeeeccCC
Confidence 5 69999999999999999999999999987 4689999999754
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=5e-38 Score=363.15 Aligned_cols=182 Identities=22% Similarity=0.299 Sum_probs=138.0
Q ss_pred cccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhh
Q 002787 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (881)
Q Consensus 358 G~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (881)
..|.++++ +|+||++||||+|||+|+++..+
T Consensus 19 ~~~~~I~~-------kldyl~~LGvtaIwl~P~~~~~~------------------------------------------ 49 (479)
T PRK09441 19 KLWNRLAE-------RAPELAEAGITAVWLPPAYKGTS------------------------------------------ 49 (479)
T ss_pred cHHHHHHH-------HHHHHHHcCCCEEEeCCCccCCC------------------------------------------
Confidence 35667765 49999999999999999998743
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCC---------CcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEE
Q 002787 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWG---------VPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVL 508 (881)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~---------ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIl 508 (881)
...+|||+|.+|| .++++|||. +|||+||++||++||+|||
T Consensus 50 -----------------------~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~-------~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 50 -----------------------GGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK-------EELLNAIDALHENGIKVYA 99 (479)
T ss_pred -----------------------CCCCCCCCeecccccccccccCCcCcCcCCH-------HHHHHHHHHHHHCCCEEEE
Confidence 0257999999999 789999994 5799999999999999999
Q ss_pred EeeccccCCCC--CCCCC------------------CccCCC-CC-----------CCceecCCC--------Ccc----
Q 002787 509 DVVYNHLQGSG--PFDDN------------------SVLDKV-VP-----------GYYLRRNSD--------GFI---- 544 (881)
Q Consensus 509 DVVyNHt~~~g--~~~~~------------------s~lDk~-vP-----------~YY~r~~~~--------G~~---- 544 (881)
|+|+||++... +|... ..+... .| .||+....+ +.+
T Consensus 100 D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (479)
T PRK09441 100 DVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVG 179 (479)
T ss_pred EECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecC
Confidence 99999998532 22210 000000 01 122221100 000
Q ss_pred --ccC-------------CCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccC
Q 002787 545 --EHS-------------TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHG 609 (881)
Q Consensus 545 --~~s-------------tc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~ 609 (881)
..+ ...+++|++||.|+++|++++++|+++|||||||+|+++|++.++|.++.+++++..+
T Consensus 180 ~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~~~~~~~~~~~~~---- 255 (479)
T PRK09441 180 DGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFIKEWIEHVREVAG---- 255 (479)
T ss_pred CCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHHHHHHHHHHHhcC----
Confidence 001 1256999999999999999999999999999999999999999999999999987652
Q ss_pred CCCCceEEEeccCCCc
Q 002787 610 VDGSSIYIYGEGWDFG 625 (881)
Q Consensus 610 ~~g~~~~l~GE~Wd~g 625 (881)
++++++||.|...
T Consensus 256 ---~~~~~vGE~~~~~ 268 (479)
T PRK09441 256 ---KDLFIVGEYWSHD 268 (479)
T ss_pred ---CCeEEEEeecCCC
Confidence 4699999999754
No 27
>PLN02361 alpha-amylase
Probab=100.00 E-value=4.4e-36 Score=338.05 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=125.3
Q ss_pred hhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHH
Q 002787 371 VSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQ 450 (881)
Q Consensus 371 i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~ 450 (881)
+++|+||++||||+|||+|+++..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~-------------------------------------------------------- 55 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSL-------------------------------------------------------- 55 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCC--------------------------------------------------------
Confidence 456999999999999999998753
Q ss_pred HHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCC--CCCCccC
Q 002787 451 QAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF--DDNSVLD 528 (881)
Q Consensus 451 q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~--~~~s~lD 528 (881)
.+|||+|.+||.++++|||. +|||+||++||++||+||+|+|+||++...+. ...+.++
T Consensus 56 ------------~~~GY~~~d~y~~~~~~Gt~-------~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~ 116 (401)
T PLN02361 56 ------------APEGYLPQNLYSLNSAYGSE-------HLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYD 116 (401)
T ss_pred ------------CCCCCCcccccccCcccCCH-------HHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCC
Confidence 36899999999999999994 58999999999999999999999999643111 0011111
Q ss_pred CCCCCCc-----eecCCCCc---cccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHH
Q 002787 529 KVVPGYY-----LRRNSDGF---IEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL 600 (881)
Q Consensus 529 k~vP~YY-----~r~~~~G~---~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l 600 (881)
.....|. ......+. ..+....+|+|++||.|+++|++++++|++++||||||+|+++|++.+++++..+++
T Consensus 117 g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~ 196 (401)
T PLN02361 117 GIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAA 196 (401)
T ss_pred CCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhh
Confidence 1100111 00000011 112335789999999999999999987767799999999999999999998875542
Q ss_pred HhccccccCCCCCceEEEeccCCC
Q 002787 601 HSLTKEIHGVDGSSIYIYGEGWDF 624 (881)
Q Consensus 601 ~~i~pe~~~~~g~~~~l~GE~Wd~ 624 (881)
. .+|++||.|+.
T Consensus 197 ---~---------p~f~VGE~w~~ 208 (401)
T PLN02361 197 ---K---------PLFSVGEYWDS 208 (401)
T ss_pred ---C---------CeEEEEEEecC
Confidence 2 37999999975
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=5.9e-36 Score=340.25 Aligned_cols=174 Identities=18% Similarity=0.250 Sum_probs=130.9
Q ss_pred CcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchh
Q 002787 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (881)
Q Consensus 357 rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (881)
.|.|.++++| |+||++||||+|||+|+++..
T Consensus 40 gg~~~~i~~k-------ldyL~~LGvtaIWL~P~~~s~------------------------------------------ 70 (428)
T PLN00196 40 GGWYNFLMGK-------VDDIAAAGITHVWLPPPSHSV------------------------------------------ 70 (428)
T ss_pred CcCHHHHHHH-------HHHHHHcCCCEEEeCCCCCCC------------------------------------------
Confidence 4778887654 999999999999999998652
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcC-CCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeecccc
Q 002787 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPK-GSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHL 515 (881)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape-~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt 515 (881)
.++||+|.+||.++ ++|||. +|||+||++||++||+||+|+|+||+
T Consensus 71 --------------------------s~hGY~~~D~y~ld~~~fGt~-------~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 71 --------------------------SEQGYMPGRLYDLDASKYGNE-------AQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred --------------------------CCCCCCccccCCCCcccCCCH-------HHHHHHHHHHHHCCCEEEEEECccCc
Confidence 37899999999998 589994 58999999999999999999999999
Q ss_pred CCCCCCCCC--CccCCC----CCCCcee-c--------CCCCccc---cCCCCCCCCCCChHHHHHHHHHHHHHHHhCCc
Q 002787 516 QGSGPFDDN--SVLDKV----VPGYYLR-R--------NSDGFIE---HSTCMNNTASEHYMVERLIIDDLLCWAVNYKV 577 (881)
Q Consensus 516 ~~~g~~~~~--s~lDk~----vP~YY~r-~--------~~~G~~~---~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygI 577 (881)
+.+...... ..+..- ...||+. . +..+.+. .....+|+|++||.|+++|++++++|++++||
T Consensus 118 ~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~Gi 197 (428)
T PLN00196 118 TAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGF 197 (428)
T ss_pred ccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCC
Confidence 864321100 001110 0122211 0 0111211 12346899999999999999999988889999
Q ss_pred eEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccCCC
Q 002787 578 DGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (881)
Q Consensus 578 DGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~ 624 (881)
||||||+++|++.+++.+ .+++.. ..|++||.|+.
T Consensus 198 DG~RlD~ak~~~~~f~~~---~v~~~~---------p~f~VGE~W~~ 232 (428)
T PLN00196 198 DAWRLDFAKGYSAEVAKV---YIDGTE---------PSFAVAEIWTS 232 (428)
T ss_pred CEEEeehhhhCCHHHHHH---HHHccC---------CcEEEEEEecc
Confidence 999999999999998664 354443 26899999974
No 29
>PLN02784 alpha-amylase
Probab=99.97 E-value=1.9e-31 Score=315.98 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=140.5
Q ss_pred CCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCC
Q 002787 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (881)
Q Consensus 332 ~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~ 411 (881)
......||+.+..|.-.. +.. ..-|.++++ +|+||++||||+|||+|+++..
T Consensus 496 ~~~~~~~eVmlQgF~Wds---~~d-g~w~~~I~e-------kldyL~~LG~taIWLpP~~~s~----------------- 547 (894)
T PLN02784 496 SGTGSGFEILCQGFNWES---HKS-GRWYMELGE-------KAAELSSLGFTVVWLPPPTESV----------------- 547 (894)
T ss_pred ccccCCceEEEEeEEcCc---CCC-CchHHHHHH-------HHHHHHHhCCCEEEeCCCCCCC-----------------
Confidence 345678888888886421 111 122666655 5999999999999999998653
Q ss_pred ccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHH
Q 002787 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (881)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~E 491 (881)
.+|||+|.+||.++++||| .+|
T Consensus 548 ---------------------------------------------------s~~GY~p~D~y~lds~yGT-------~~E 569 (894)
T PLN02784 548 ---------------------------------------------------SPEGYMPKDLYNLNSRYGT-------IDE 569 (894)
T ss_pred ---------------------------------------------------CCCCcCcccccccCcCcCC-------HHH
Confidence 3689999999999999999 458
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCC--CCCCccCCC-----------CCCCceecCCCCccccCCCCCCCCCCCh
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPF--DDNSVLDKV-----------VPGYYLRRNSDGFIEHSTCMNNTASEHY 558 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~--~~~s~lDk~-----------vP~YY~r~~~~G~~~~stc~~d~a~e~~ 558 (881)
||+||++||++||+||+|+|+||++..... ...+.+... .|.|..|.+.+ .-.++.+.+|+|++|+
T Consensus 570 Lk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~-sgddf~~lPDLDh~np 648 (894)
T PLN02784 570 LKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKS-SGDNFHAAPNIDHSQD 648 (894)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcC-cccccCcCCcCCCCCH
Confidence 999999999999999999999999753110 001111110 01111110000 0112346789999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccCCC
Q 002787 559 MVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (881)
Q Consensus 559 mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~ 624 (881)
.|++.|.+++++|++++||||||||+++|+...++.+. +++.. ..|++||.|+.
T Consensus 649 eVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkey---v~a~k---------p~F~VGEyWd~ 702 (894)
T PLN02784 649 FVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDY---MEASE---------PYFAVGEYWDS 702 (894)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHH---HhccC---------CcEEEEEeccc
Confidence 99999999999999999999999999999988875444 44443 37999999985
No 30
>PLN03244 alpha-amylase; Provisional
Probab=99.97 E-value=2.9e-29 Score=293.88 Aligned_cols=236 Identities=20% Similarity=0.263 Sum_probs=165.1
Q ss_pred ec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceeeecCccccccccCCC---c-ceEeeCCCCCCCCCcccccc
Q 002787 249 QL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR---R-TLLVNLDSDTLKPEGWDKLV 323 (881)
Q Consensus 249 ~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA~~ls~ng~---~-S~vvDl~~~~~~P~~W~~~~ 323 (881)
.| +..+|.|...++...+|..|+..|.. |. | + ....-+|++.+..+.. + .++.|+.. .....|..
T Consensus 323 ~~~~~~~~w~~~~~~~i~H~s~~k~~~~~--~~-g--~-~~RiPaw~~~~~~~~~~~~~~~~~w~P~~--~~~y~~k~-- 392 (872)
T PLN03244 323 ESRKGRKAWLKKYIPAIPHGSKYRLYFNT--PD-G--P-LERIPAWATYVLPDDDGKQAFAIHWEPPP--EAAHKWKN-- 392 (872)
T ss_pred HhhcccCceeecccCCCCCCCeEEEEEEc--CC-C--C-cccCCCCeeeEEecCCCCceeeeEeCCCc--ccCCccCC--
Confidence 44 56789999999999999999988863 21 2 1 3455666666654422 1 23333321 22356765
Q ss_pred cCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccc
Q 002787 324 YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENW 403 (881)
Q Consensus 324 ~~~P~~~~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~ 403 (881)
.+|. .+....|||.||.-.+. +..-|+|..|+++
T Consensus 393 -~~p~--~p~~lrIYE~HvGms~~------e~kv~ty~eF~~~------------------------------------- 426 (872)
T PLN03244 393 -MKPK--VPESLRIYECHVGISGS------EPKISSFEEFTEK------------------------------------- 426 (872)
T ss_pred -CCCC--CCCCceEEEEEeeecCC------CCCcccHHHHhhc-------------------------------------
Confidence 3343 45778999999987653 2334899888652
Q ss_pred cccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCC
Q 002787 404 KSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483 (881)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~ 483 (881)
+.+||||+++||+
T Consensus 427 -----------------------------------------------------------------vt~fFApssRYGT-- 439 (872)
T PLN03244 427 -----------------------------------------------------------------VTNFFAASSRYGT-- 439 (872)
T ss_pred -----------------------------------------------------------------cCcccccCcccCC--
Confidence 3479999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHH
Q 002787 484 NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERL 563 (881)
Q Consensus 484 dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~ 563 (881)
.+|||+||++||++||+||||||+||++.++... ...+|.....||+ .+..|....+. +...+..+++|+++
T Consensus 440 -----PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G-L~~fDGt~~~Yf~-~~~~g~~~~WG-s~~fnyg~~EVr~F 511 (872)
T PLN03244 440 -----PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSNDCYFH-TGKRGHHKHWG-TRMFKYGDLDVLHF 511 (872)
T ss_pred -----HHHHHHHHHHHHHCCCEEEEEecCccCCCccccc-hhhcCCCccceec-cCCCCccCCCC-CceecCCCHHHHHH
Confidence 4589999999999999999999999998764322 2345543224555 33445443343 46779999999999
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCccc-------------------------HHHHHHHHHHHHhccccccCCCCCceEEE
Q 002787 564 IIDDLLCWAVNYKVDGFRFDLMGHIM-------------------------KSTMMKAKHALHSLTKEIHGVDGSSIYIY 618 (881)
Q Consensus 564 i~Dsl~~W~~eygIDGFRfDlm~h~~-------------------------~~~~~~~~~~l~~i~pe~~~~~g~~~~l~ 618 (881)
|++++++|++||||||||||++..|- ..++..+.+.|+++. +++++|
T Consensus 512 LLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~--------P~~itI 583 (872)
T PLN03244 512 LISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALH--------PKIITI 583 (872)
T ss_pred HHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhC--------CCeEEE
Confidence 99999999999999999999884332 123455566666665 579999
Q ss_pred eccCC
Q 002787 619 GEGWD 623 (881)
Q Consensus 619 GE~Wd 623 (881)
+|-..
T Consensus 584 AEDsS 588 (872)
T PLN03244 584 AEDAT 588 (872)
T ss_pred EEcCC
Confidence 99653
No 31
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.6e-30 Score=294.36 Aligned_cols=190 Identities=24% Similarity=0.368 Sum_probs=151.9
Q ss_pred ceEEEEEcccccccCCCCC-CCC-CcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCc
Q 002787 335 ISIYELHVRDFSVSDHTVH-PDF-RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (881)
Q Consensus 335 ~vIYElHVRdFs~~d~s~~-~~~-rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~ 412 (881)
.|||++.+|.|...+.+.+ ... .|++.|++++ |+||++|||++|||+|+++...
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-------LdYl~~LGv~aiwl~Pi~~s~~----------------- 56 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-------LDYLKELGVDAIWLSPIFESPQ----------------- 56 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHh-------hhHHHHhCCCEEEeCCCCCCCc-----------------
Confidence 4899999999988665211 112 3899988765 9999999999999999998742
Q ss_pred cccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHH
Q 002787 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (881)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Ef 492 (881)
.++||++.+|+.+++.||| +++|
T Consensus 57 --------------------------------------------------~~~gY~~~Dy~~id~~~Gt-------~~d~ 79 (505)
T COG0366 57 --------------------------------------------------ADHGYDVSDYTKVDPHFGT-------EEDF 79 (505)
T ss_pred --------------------------------------------------cCCCccccchhhcCcccCC-------HHHH
Confidence 4899999999999999999 5689
Q ss_pred HHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCC---CCceecCC--------------CCc-cc--------c
Q 002787 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVP---GYYLRRNS--------------DGF-IE--------H 546 (881)
Q Consensus 493 r~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP---~YY~r~~~--------------~G~-~~--------~ 546 (881)
++||+++|++||+||||+|+|||+..++|+..+...+..| .||.+.+. .|. .+ .
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYL 159 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEE
Confidence 9999999999999999999999999988876554444321 56665321 011 10 0
Q ss_pred ---CCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccH-----------HHHHHHHHHHHhcccc
Q 002787 547 ---STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-----------STMMKAKHALHSLTKE 606 (881)
Q Consensus 547 ---stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~-----------~~~~~~~~~l~~i~pe 606 (881)
..-.+++|.+|+.|++.|++.+++|++ .||||||+|+++|+.+ .++..+.+.+++..+.
T Consensus 160 ~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (505)
T COG0366 160 HLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPD 232 (505)
T ss_pred EecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHH
Confidence 112356899999999999999999998 7999999999999999 6778888888888753
No 32
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.96 E-value=1.8e-28 Score=281.46 Aligned_cols=169 Identities=16% Similarity=0.210 Sum_probs=126.6
Q ss_pred cccccccccchhhhhhHH-HHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchh
Q 002787 358 GGYLAFTLQNSAGVSHLK-KLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (881)
Q Consensus 358 G~y~g~tek~~~~i~hL~-~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (881)
|++.|++++ |+ ||+++ |+.|||||+|....
T Consensus 17 GdL~gl~~k-------Ld~yL~~l-v~~vhllPff~psp----------------------------------------- 47 (495)
T PRK13840 17 GGLKSLTAL-------LDGRLDGL-FGGVHILPFFYPID----------------------------------------- 47 (495)
T ss_pred CCHhHHHHH-------HHHHHHHH-hCeEEECCCccCCC-----------------------------------------
Confidence 899988765 99 59999 99999999985321
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccC
Q 002787 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (881)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~ 516 (881)
+...|||+.+|+.+++.||| +++|++|++ ||+||||+|+|||+
T Consensus 48 -------------------------~sD~GYdv~DY~~VDP~fGt-------~eDf~~L~~-----giklmlDlV~NHtS 90 (495)
T PRK13840 48 -------------------------GADAGFDPIDHTKVDPRLGD-------WDDVKALGK-----THDIMADLIVNHMS 90 (495)
T ss_pred -------------------------CCCCCCCCcChhhcCcccCC-------HHHHHHHHh-----CCeEEEEECCCcCC
Confidence 13569999999999999999 567999995 99999999999999
Q ss_pred CCCCCCCCCcc---CCCCCCCceecCC------------------CCc-------------ccc---CCCCCCCCCCChH
Q 002787 517 GSGPFDDNSVL---DKVVPGYYLRRNS------------------DGF-------------IEH---STCMNNTASEHYM 559 (881)
Q Consensus 517 ~~g~~~~~s~l---Dk~vP~YY~r~~~------------------~G~-------------~~~---stc~~d~a~e~~m 559 (881)
..++|+..+.- +.....||.+.+. .|. +.+ +...+++|.+||.
T Consensus 91 ~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~ 170 (495)
T PRK13840 91 AESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAA 170 (495)
T ss_pred CCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHH
Confidence 99998754221 1112245554321 011 011 1135789999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEcCCCcccH-------------HHHHHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-------------STMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 560 v~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~-------------~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
|+++|++.+++|++ .||||||+|+++++-+ +++++++..++... ..+++|.|.
T Consensus 171 V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~----------~~ll~Ei~~ 236 (495)
T PRK13840 171 GWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARG----------MEVLVEIHS 236 (495)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcC----------CEEEEeCcc
Confidence 99999999999996 5999999999987654 24566666665442 458899886
No 33
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.1e-26 Score=268.19 Aligned_cols=403 Identities=19% Similarity=0.214 Sum_probs=233.2
Q ss_pred CCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCC
Q 002787 331 SFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLP 410 (881)
Q Consensus 331 ~~~d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~ 410 (881)
-|...+|||+-+|+|..++.... |++.|+++| |+||+++|+|+|||.|+++...
T Consensus 14 ~W~~~~~YQI~~~sF~~s~~d~~----G~~~GI~~k-------ldyi~~lG~taiWisP~~~s~~--------------- 67 (545)
T KOG0471|consen 14 WWKTESIYQIYPDSFADSDGDGV----GDLKGITSK-------LDYIKELGFTAIWLSPFTKSSK--------------- 67 (545)
T ss_pred hhhcCceeEEeccccccccCCCc----cccccchhh-------hhHHHhcCCceEEeCCCcCCCH---------------
Confidence 35667999999999988765442 999999876 9999999999999999998742
Q ss_pred CccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHH
Q 002787 411 GLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTI 490 (881)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~ 490 (881)
.++||++.+|+.++++||| ++
T Consensus 68 ----------------------------------------------------~~~GY~~~d~~~l~p~fGt-------~e 88 (545)
T KOG0471|consen 68 ----------------------------------------------------PDFGYDASDLEQLRPRFGT-------EE 88 (545)
T ss_pred ----------------------------------------------------HHhccCccchhhhcccccH-------HH
Confidence 2789999999999999999 56
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCC-CCCceecCCC----C---------------ccc-----
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVV-PGYYLRRNSD----G---------------FIE----- 545 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~v-P~YY~r~~~~----G---------------~~~----- 545 (881)
+|++||+++|++||++|+|+|.||++..++|+..+...+.. -.+|.+.+.. | ...
T Consensus 89 df~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~ 168 (545)
T KOG0471|consen 89 DFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGR 168 (545)
T ss_pred HHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccc
Confidence 89999999999999999999999999777777666655543 0122221110 0 000
Q ss_pred --cC-----CCCCCCCCCChHHHHHHHHHHH-HHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEE
Q 002787 546 --HS-----TCMNNTASEHYMVERLIIDDLL-CWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYI 617 (881)
Q Consensus 546 --~s-----tc~~d~a~e~~mv~k~i~Dsl~-~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l 617 (881)
.+ ...++++++++.|++.|.++++ +|. ++||||||+|+++++....+. ..-++ ..++-
T Consensus 169 ~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-------~~~~~------~p~~~ 234 (545)
T KOG0471|consen 169 QKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-------NMWPD------EPVFD 234 (545)
T ss_pred cceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-------ccccC------CCccc
Confidence 01 1246889999999999999999 665 689999999999999877533 11111 23566
Q ss_pred EeccCCCccc-ccccCCCccccccCCCCcceecchHHHHHhcCCCCCCC-CcccccccccccCCCCCCCCChHHHHHHHH
Q 002787 618 YGEGWDFGEV-AKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGP-PLQQGFVTGLLLQPNGHDHGTKAVEEQMLA 695 (881)
Q Consensus 618 ~GE~Wd~gev-~~~~~~~~a~Q~n~~gtgig~fnDr~Rdavrgg~~F~~-~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~ 695 (881)
.||.|...+- ........-.+. .+ -.++...+.+ ++. ...-+|..........+. . .+....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~y~~~~~-----~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~~ 300 (545)
T KOG0471|consen 235 VGEKLQDDNYVAYQYNDYGEDQP-----EI----HDLIRAERFL--LDDYSAAFGFGDKRILQTEAYS--S-LEQLLRLL 300 (545)
T ss_pred ceeEecCcchhhcccccccccch-----hh----hhHHHHHHhh--hhhhhhcccccchhhhhhhhhc--c-HHHHHhhh
Confidence 6776654431 100000000000 00 0111111110 000 000001100000000000 0 00000000
Q ss_pred HHHHHHHhhh----cccchhhhccccCCcccccCcccccCCCCccccCCCCccEEeeeccccchhhhhhc----------
Q 002787 696 AAKDHIQVGL----AANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVS---------- 761 (881)
Q Consensus 696 ~~~d~i~~gl----aGnL~d~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~D~l~---------- 761 (881)
...+..+... .++|....+. ......+... .|.+... ..-..+--.+.+||..++...+.
T Consensus 301 ~n~~~~~~~~~~~~~~~lt~~~~~--~~~~~~~~~~-~~~~~~~---~~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l 374 (545)
T KOG0471|consen 301 ENSSKPRGSDLPFNFDTLSDLGLT--VASIYKEVEV-DWLSNHD---TENRWAHWVLGNHDQARLASRFGSDSVDLLNVL 374 (545)
T ss_pred ccCCCCccccccchhhhhhhhhcc--chHHHHHHHH-HHHhcCC---ccCCceeeeecCccchhhHHHhcchhHHHHhHH
Confidence 0000000000 0000000000 0000011111 1111100 01123466889999988874432
Q ss_pred ---CCCeeeEecCccccccCC--CCCCCCCCC--CCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchh
Q 002787 762 ---LKGIPFFHCGDEILRSKS--LDRDSYNSG--DWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKS 834 (881)
Q Consensus 762 ---~kGiPfiy~GdE~grSks--gd~dsY~sg--Dw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~ 834 (881)
..|+|.+|+|+|+++..- ...+.++.. .+..++.|+.++| .|++ ..-..|-.+.......+.+.+..
T Consensus 375 ~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~---~gfs---~~~~~~~~~~~~~~~~n~~~~~~ 448 (545)
T KOG0471|consen 375 LLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTN---AGFS---EASKTWLPVNADYTVINVKMQSG 448 (545)
T ss_pred hcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccc---cCCC---CccCcceeccccchhheeecccc
Confidence 229999999999998765 233443322 2267788887643 4444 12245666665555566778888
Q ss_pred hHHHHHHHHHHHHHHHhcCccccc
Q 002787 835 HILAALENFSDVLRIRYSSPLFRL 858 (881)
Q Consensus 835 ~~~~~~~~~k~Ll~lRkssp~lrl 858 (881)
+.+.+...|++++.+|+++..++.
T Consensus 449 ~~~s~~~~~~~~~~lr~~~~~~~~ 472 (545)
T KOG0471|consen 449 DPQSTLKLFKRLLDLRKSERSYLH 472 (545)
T ss_pred CCccHHHHHHHHHHHhhhcccccc
Confidence 888999999999999999974443
No 34
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.94 E-value=2.6e-26 Score=262.35 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=101.5
Q ss_pred CCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC---CCCCCceec--
Q 002787 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK---VVPGYYLRR-- 538 (881)
Q Consensus 464 nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk---~vP~YY~r~-- 538 (881)
++|||+.+|+.+++.||| .++|++|+++ |+||+|+|+|||+..++|+..+.-++ ....||...
T Consensus 45 D~GYdv~DY~~VDP~~Gt-------~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~ 112 (470)
T TIGR03852 45 DRGFAPMDYTEVDPAFGD-------WSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKD 112 (470)
T ss_pred CCCcCchhhceeCcccCC-------HHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEeccc
Confidence 789999999999999999 5679999998 79999999999999999875533221 122566511
Q ss_pred ---C--C---C--------------------C--cccc---CCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCC
Q 002787 539 ---N--S---D--------------------G--FIEH---STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (881)
Q Consensus 539 ---~--~---~--------------------G--~~~~---stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm 585 (881)
+ + + | .+.+ +...+|+|.+|+.|+++|.+.+++|++ .||||||+|++
T Consensus 113 ~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl~-~GvdgfRLDAv 191 (470)
T TIGR03852 113 FWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLAE-HGASIIRLDAF 191 (470)
T ss_pred ccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecc
Confidence 0 0 0 0 0000 124678999999999999999999994 69999999999
Q ss_pred CcccHH-----HH--HHHHHHHHhccccccCCCCCceEEEeccCC
Q 002787 586 GHIMKS-----TM--MKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (881)
Q Consensus 586 ~h~~~~-----~~--~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd 623 (881)
+++-|. +. .+..+.++.+..-. ..++++|++|.|.
T Consensus 192 ~~l~K~~Gt~c~~l~pet~~~l~~~r~~~---~~~~~~ll~E~~~ 233 (470)
T TIGR03852 192 AYAVKKLGTNDFFVEPEIWELLDEVRDIL---APTGAEILPEIHE 233 (470)
T ss_pred hhhcccCCCCcccCChhHHHHHHHHHHHh---ccCCCEEEeHhhh
Confidence 666543 11 12233332222110 1257999999973
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.88 E-value=1.7e-21 Score=225.72 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=113.2
Q ss_pred hhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHH
Q 002787 372 SHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQ 451 (881)
Q Consensus 372 ~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q 451 (881)
.-.+||++|||++|||.|+|+...|.... .++
T Consensus 78 ~~wdyL~~LGV~~iwl~P~~~SGgi~g~~---~tP--------------------------------------------- 109 (688)
T TIGR02455 78 ALWKALSEIGVQGIHNGPIKLSGGIRGRE---FTP--------------------------------------------- 109 (688)
T ss_pred HHHHHHHHhCCCEEEeCcceecccccccC---CCC---------------------------------------------
Confidence 34667777899999999999997654311 000
Q ss_pred HHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCcc-CCC
Q 002787 452 AQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-DKV 530 (881)
Q Consensus 452 ~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~l-Dk~ 530 (881)
....|||..+| .+++.||| +++|++||+++|++||+||+|+|.|||+..+++ ..+-. ++-
T Consensus 110 ----------~~D~gyDi~d~-~Idp~~GT-------~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF-~lAr~~~~~ 170 (688)
T TIGR02455 110 ----------SIDGNFDRISF-DIDPLLGS-------EEELIQLSRMAAAHNAITIDDIIPAHTGKGADF-RLAELAHGD 170 (688)
T ss_pred ----------CCCCCCCcccC-ccCcccCC-------HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcch-HHHhhcCCC
Confidence 24579999995 99999999 568999999999999999999999999987773 22211 445
Q ss_pred CCCCc-----------eecCCC-C----------------------c----------cc--cC-----------------
Q 002787 531 VPGYY-----------LRRNSD-G----------------------F----------IE--HS----------------- 547 (881)
Q Consensus 531 vP~YY-----------~r~~~~-G----------------------~----------~~--~s----------------- 547 (881)
.|+|| .+.+.. + . ++ ++
T Consensus 171 Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~ 250 (688)
T TIGR02455 171 YPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWV 250 (688)
T ss_pred CCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhh
Confidence 57888 333211 1 0 00 11
Q ss_pred ------CCCCCCCCCChH--HHHHHH-HHHHHHHHhCCceEEEEcCCCcccH
Q 002787 548 ------TCMNNTASEHYM--VERLII-DDLLCWAVNYKVDGFRFDLMGHIMK 590 (881)
Q Consensus 548 ------tc~~d~a~e~~m--v~k~i~-Dsl~~W~~eygIDGFRfDlm~h~~~ 590 (881)
..-+++|+.||. +++.|+ |.+++|. +.|+||||+|+++++..
T Consensus 251 Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~ 301 (688)
T TIGR02455 251 YLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGV 301 (688)
T ss_pred hhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-Hhccccceeccccceee
Confidence 123689999999 999999 9999998 57999999999877743
No 36
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=99.82 E-value=1.3e-21 Score=195.55 Aligned_cols=79 Identities=57% Similarity=0.943 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCCHHHHhccccccccCC
Q 002787 797 SYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQVRRRHMSCLD 875 (881)
Q Consensus 797 ~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lRkssp~lrlgt~~~I~~~v~f~n~~~ 875 (881)
++++||||+||||++||+++|++|+++|+|+++||++++|..+.++|++||+||++||||||+++++|++||+|||++.
T Consensus 1 t~q~NnwgvGLP~~~kn~~~W~~i~~ll~d~~~kP~~~~I~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~ 79 (168)
T PF11852_consen 1 TYQDNNWGVGLPPADKNGDNWPLIRPLLADPALKPSPADIAAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGP 79 (168)
T ss_dssp TSS--S-SSS---HHHHGGGHHHHHHHHCTCCGS--HHHHHHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-ST
T ss_pred CCccCCCCcCCCcccccccchhhhhhhccCCccCCCHHHHHHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999974
No 37
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.82 E-value=5.5e-20 Score=220.74 Aligned_cols=179 Identities=21% Similarity=0.223 Sum_probs=131.9
Q ss_pred cccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhh
Q 002787 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (881)
Q Consensus 358 G~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (881)
|+|.++++ +|+||++||||||||+|+|+...
T Consensus 13 ~tf~~~~~-------~L~YL~~LGv~~V~lsPi~~a~~------------------------------------------ 43 (825)
T TIGR02401 13 FTFDDAAA-------LLPYLKSLGVSHLYLSPILTAVP------------------------------------------ 43 (825)
T ss_pred CCHHHHHH-------hhHHHHHcCCCEEEeCcCccCCC------------------------------------------
Confidence 78877655 59999999999999999997632
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCC
Q 002787 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (881)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~ 517 (881)
+.+||||+.+|+.+++.||+ .++|++||++||++||+||||+|+||++.
T Consensus 44 ------------------------gs~hGYdv~D~~~idp~lGt-------~edf~~Lv~aah~~Gm~vIlDiVpNH~a~ 92 (825)
T TIGR02401 44 ------------------------GSTHGYDVVDHSEINPELGG-------EEGLRRLSEAARARGLGLIVDIVPNHMAV 92 (825)
T ss_pred ------------------------CCCCCCCCCCCCCcCCCCCC-------HHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 25799999999999999999 45899999999999999999999999996
Q ss_pred C---CCCCCC-------C----ccC--C----------------------------CCC--------CCceecCCC--Cc
Q 002787 518 S---GPFDDN-------S----VLD--K----------------------------VVP--------GYYLRRNSD--GF 543 (881)
Q Consensus 518 ~---g~~~~~-------s----~lD--k----------------------------~vP--------~YY~r~~~~--G~ 543 (881)
. ++|... | .+| - +.. .||+..-+- +.
T Consensus 93 ~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~t 172 (825)
T TIGR02401 93 HLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGT 172 (825)
T ss_pred ccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccc
Confidence 5 233210 0 010 0 000 144332110 10
Q ss_pred c---------------------------------------ccC---CCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEE
Q 002787 544 I---------------------------------------EHS---TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFR 581 (881)
Q Consensus 544 ~---------------------------------------~~s---tc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFR 581 (881)
+ ..+ .....++.|++.|.......+..|++++.|||+|
T Consensus 173 y~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlR 252 (825)
T TIGR02401 173 LPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLR 252 (825)
T ss_pred hhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEE
Confidence 0 000 0123457899999999999999999998899999
Q ss_pred EcCCCcc--cHHHHHHHHHHHHhccccccCCCCCceEEEec-cCCCccc
Q 002787 582 FDLMGHI--MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGE-GWDFGEV 627 (881)
Q Consensus 582 fDlm~h~--~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE-~Wd~gev 627 (881)
+|.+.++ |+.++.++++.+ . ++.|++.| .|..+|.
T Consensus 253 IDh~dGL~dP~~Yl~rLr~~~---~--------~~~yivvEKIl~~~E~ 290 (825)
T TIGR02401 253 IDHIDGLADPEGYLRRLRELV---G--------PARYLVVEKILAPGEH 290 (825)
T ss_pred eccccccCChHHHHHHHHHhc---C--------CCceEEEEEeccCCCc
Confidence 9999999 888988887552 1 24688888 6666554
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.77 E-value=5.2e-19 Score=178.20 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=83.2
Q ss_pred EEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccC
Q 002787 339 ELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQN 418 (881)
Q Consensus 339 ElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~ 418 (881)
++.++.|..++++. .|+|.+++++ |+||++||||+|||+|+++....
T Consensus 1 qi~~~~F~~~~~~~----~G~~~gi~~~-------l~yl~~lG~~~I~l~Pi~~~~~~---------------------- 47 (166)
T smart00642 1 QIYPDRFADGNGDG----GGDLQGIIEK-------LDYLKDLGVTAIWLSPIFESPQG---------------------- 47 (166)
T ss_pred CeeeccccCCCCCC----CcCHHHHHHH-------HHHHHHCCCCEEEECcceeCCCC----------------------
Confidence 35678888766543 6999998775 99999999999999999987531
Q ss_pred CCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHH
Q 002787 419 TFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQA 498 (881)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~a 498 (881)
...+|||+|.+|++++++||+ ++|||+||++
T Consensus 48 ------------------------------------------~~~~~gY~~~d~~~i~~~~Gt-------~~d~~~lv~~ 78 (166)
T smart00642 48 ------------------------------------------YPSYHGYDISDYKQIDPRFGT-------MEDFKELVDA 78 (166)
T ss_pred ------------------------------------------CCCCCCcCccccCCCCcccCC-------HHHHHHHHHH
Confidence 025899999999999999999 4689999999
Q ss_pred HhhcCCEEEEEeeccccCC
Q 002787 499 LNHIGLHVVLDVVYNHLQG 517 (881)
Q Consensus 499 lH~~GirVIlDVVyNHt~~ 517 (881)
||++||+||||+|+|||+.
T Consensus 79 ~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 79 AHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHCCCEEEEEECCCCCCC
Confidence 9999999999999999964
No 39
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=6e-18 Score=156.29 Aligned_cols=96 Identities=43% Similarity=0.726 Sum_probs=82.5
Q ss_pred CccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceee
Q 002787 210 LGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCY 288 (881)
Q Consensus 210 LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~ 288 (881)
|||++.+++++|+||||+|++|+|+||+++....+...++| +..+|+|++.+++.++|.+|+|+|+... + ...+
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~---~--~~~~ 75 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYEVKVYK---G--ETNE 75 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEEEEEec---e--EEEE
Confidence 79999999999999999999999999987643244567899 5689999999999999999999998531 1 3458
Q ss_pred ecCccccccccCCCcceEeeCC
Q 002787 289 ANDPYARGLSSDGRRTLLVNLD 310 (881)
Q Consensus 289 vtDPYA~~ls~ng~~S~vvDl~ 310 (881)
++||||++++.|+.+|.++|+.
T Consensus 76 ~~DPyA~~~~~~~~~s~i~d~~ 97 (100)
T cd02860 76 VVDPYAKALSANGERSVDLDDK 97 (100)
T ss_pred EcCcccEeEeeCCCceEECChH
Confidence 9999999999999999988874
No 40
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.67 E-value=1.1e-15 Score=174.84 Aligned_cols=338 Identities=19% Similarity=0.275 Sum_probs=200.8
Q ss_pred CCCccEEeCCe-eEEEEEcCCCC-------eEEEEEeeCCCCCC---Cc-------eEEecccCCC-EEEEE-----cCC
Q 002787 208 GPLGALYAEET-VSLYLWAPTAQ-------SVSACIYRDPLGGN---PL-------EVVQLKENDG-VWSIK-----GPK 263 (881)
Q Consensus 208 ~~LGa~~~~~~-v~F~vWAPtA~-------~V~L~ly~~~~~~~---~~-------~~~~M~~~~G-vWsv~-----v~~ 263 (881)
..|||++.++| +.|-.|.|.-. .|.|.+|..-+.-. +. ..+++...+. .|-|. +..
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgVv~GlraGtr 105 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGVVAGLRAGTR 105 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeehhhccCCCCc
Confidence 36999999766 79999999754 89999997543211 11 2334444444 45443 123
Q ss_pred CCCCcEEEEEEEeecCCCcccceeeecCccccccccCCC--cceEeeCCCCCCCCC--cc-c-----ccccCCCCCCCCC
Q 002787 264 SWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR--RTLLVNLDSDTLKPE--GW-D-----KLVYEKPDILSFS 333 (881)
Q Consensus 264 ~~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA~~ls~ng~--~S~vvDl~~~~~~P~--~W-~-----~~~~~~P~~~~~~ 333 (881)
+..|.+|.-+..-.+ + +...+.||.|.|+.- |. +..+.|+..-..+-. +. + ......|.+.+
T Consensus 106 ~q~GsfYwLry~d~~---~--~~~~I~DpLaySlPy-GvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~-- 177 (811)
T PF14872_consen 106 DQAGSFYWLRYRDQD---G--EVQIIRDPLAYSLPY-GVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVPA-- 177 (811)
T ss_pred ccccceEEEEEccCC---C--CeEEecccccccCcc-cccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccCC--
Confidence 456788877654321 3 346799999998853 32 334556543110000 00 0 00013344433
Q ss_pred CceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHH------H--HHCCCcEEEeCcccccCCCCcccccccc
Q 002787 334 DISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKK------L--SNAGLTHVHLLPTFQFAGVDDRKENWKS 405 (881)
Q Consensus 334 d~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~------L--~~lGvT~I~LlPvfd~~ti~e~~~~~~~ 405 (881)
...|-++||+.-|.. |++.|+|+.-..+-.+|.. . .=.|.++|+||||-....... ..
T Consensus 178 P~nILQiHv~TAsp~---------GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~---e~-- 243 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---------GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRA---EN-- 243 (811)
T ss_pred CceeEEEecCCCCCC---------cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceecc---cc--
Confidence 468999999987653 9999998752222222110 0 014999999999853321100 00
Q ss_pred cCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCC-
Q 002787 406 VGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPN- 484 (881)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~d- 484 (881)
+.-..++. +... ++..+.....+-.+.+.....++..|.-|||||..-+ ||=+|+|.
T Consensus 244 ------------~~~h~Ff~-~~~~-----d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~----GsaAtNPal 301 (811)
T PF14872_consen 244 ------------EPGHEFFS-IRPE-----DEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVIL----GSAATNPAL 301 (811)
T ss_pred ------------CCCCceee-eccc-----ccccccccccccccCceEEEEecCCCccccCcceeee----ccCCCCHHH
Confidence 00000000 0000 0000000000000112222356677889999998655 66677775
Q ss_pred -CCchHHHHHHHHHHHh---hcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHH
Q 002787 485 -GSCRTIEFRRMVQALN---HIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMV 560 (881)
Q Consensus 485 -g~~ri~Efr~mV~alH---~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv 560 (881)
++.|-.|+-++|..|| ...|+||+|+||.|.- +..++-+.+.|+...|-. +.++|..+|+|
T Consensus 302 L~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHAD-------NQ~~~LLn~~flkGPnMY--------GQdlnhq~P~V 366 (811)
T PF14872_consen 302 LETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHAD-------NQALDLLNRRFLKGPNMY--------GQDLNHQNPVV 366 (811)
T ss_pred HhcCCcHHHHHHHHHHhcCCCCCeEEEEeeeccccc-------chhhHhhhhhhccCCccc--------cccccccChHH
Confidence 5679999999999999 4789999999999983 444555555565433322 46899999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEcCCCcc------------cHHHHHHHHHHHHhccc
Q 002787 561 ERLIIDDLLCWAVNYKVDGFRFDLMGHI------------MKSTMMKAKHALHSLTK 605 (881)
Q Consensus 561 ~k~i~Dsl~~W~~eygIDGFRfDlm~h~------------~~~~~~~~~~~l~~i~p 605 (881)
|..+++.-+.=+ .+|+||.|+|.+... +.+.+.+.-+.++.|..
T Consensus 367 RAILLEmQRRK~-n~GaDGIRVDGgQDFk~fnplt~~ve~DD~YL~~M~dvvQ~I~~ 422 (811)
T PF14872_consen 367 RAILLEMQRRKI-NTGADGIRVDGGQDFKFFNPLTGRVEYDDAYLLAMSDVVQEIGG 422 (811)
T ss_pred HHHHHHHHHhhc-ccCCceeEecccccceeecccccccccchHHHHHHHHHHhhccc
Confidence 999999999876 589999999987543 33455666666666654
No 41
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.65 E-value=5.7e-16 Score=144.05 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=75.4
Q ss_pred CCccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEe-ecCCCcc--c
Q 002787 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ--I 284 (881)
Q Consensus 209 ~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~-~~p~~g~--~ 284 (881)
+|||++.+++++|+||||+|++|+|++|++... ...++| +..+|+|++.+++...|.+|+|+|+. ++|..+. .
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~---~~~~~m~~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~~~~~~ 77 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDGS---ETRLPLTEEYGGVWHGFLPGIKAGQRYGFRVHGPYDPERGLRFN 77 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCCC---EEEEEcccccCCEEEEEECCCCCCCEEEEEECCccCcccCcccC
Confidence 699999999999999999999999999975421 356889 56789999999999999999999986 5565443 2
Q ss_pred ceeeecCccccccccCCC
Q 002787 285 EKCYANDPYARGLSSDGR 302 (881)
Q Consensus 285 e~~~vtDPYA~~ls~ng~ 302 (881)
++.+++||||++++..+.
T Consensus 78 ~~~~~~DPYA~~~~~~~~ 95 (103)
T cd02856 78 PAKLLLDPYARALDGPLA 95 (103)
T ss_pred CCeEEecCCcceEcCCcc
Confidence 457899999999986543
No 42
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=7e-16 Score=165.97 Aligned_cols=151 Identities=29% Similarity=0.423 Sum_probs=105.7
Q ss_pred CCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCC---CCCCCCC---CccC--CCCCC--C-
Q 002787 466 GYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG---SGPFDDN---SVLD--KVVPG--Y- 534 (881)
Q Consensus 466 GYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~---~g~~~~~---s~lD--k~vP~--Y- 534 (881)
.|.|..|- .+.+-|. .+||+.||..|++-|+|+++|||+||+.. +|.-... +..+ +--|+ |
T Consensus 79 RYQPvSYK-L~tRSGN-------E~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs 150 (504)
T KOG2212|consen 79 RYQPVSYK-LCTRSGN-------EDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYS 150 (504)
T ss_pred ecccceEE-eeccCCC-------HHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcc
Confidence 69999984 4444444 46999999999999999999999999983 1110000 0011 11121 1
Q ss_pred ---ceecCCC---CccccC-------CC----CCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHH
Q 002787 535 ---YLRRNSD---GFIEHS-------TC----MNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597 (881)
Q Consensus 535 ---Y~r~~~~---G~~~~s-------tc----~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~ 597 (881)
|+....+ +.++++ .| .-|++..+.-||.-|++-|.+.+ +.||-|||.|+++||-.+.++.+.
T Consensus 151 ~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~ 229 (504)
T KOG2212|consen 151 GWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAIL 229 (504)
T ss_pred cccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHH
Confidence 1111111 112211 12 34778889999999999999988 689999999999999999999999
Q ss_pred HHHHhccccccCCCCCceEEEeccCCCcc
Q 002787 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626 (881)
Q Consensus 598 ~~l~~i~pe~~~~~g~~~~l~GE~Wd~ge 626 (881)
..|+.++.+. -..++..|+|-|..+.|.
T Consensus 230 ~~l~nLnsD~-f~s~srpfi~qEVID~Gg 257 (504)
T KOG2212|consen 230 DKLHNLNSDW-FPSGSKPFIYQEVIDLGG 257 (504)
T ss_pred HHHhhccccc-ccCCCCceehhhhhhcCC
Confidence 9999998762 223577899999888664
No 43
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.62 E-value=2e-15 Score=143.80 Aligned_cols=94 Identities=22% Similarity=0.331 Sum_probs=75.4
Q ss_pred ccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEecc-c---CCCEEEEEcCCCCCCcEEEEEEEe-ecCCCccc-
Q 002787 211 GALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK-E---NDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQI- 284 (881)
Q Consensus 211 Ga~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M~-~---~~GvWsv~v~~~~~G~~Y~Y~V~~-~~p~~g~~- 284 (881)
||++.+++++|+||||+|++|+|+||+++.+..+...++|. . .+|+|++.+++.+.|.+|.|+|+. ++|..|..
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~~~ 80 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGHRF 80 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCccccc
Confidence 89999999999999999999999999875433455678893 2 369999999999999999999983 44554432
Q ss_pred -ceeeecCccccccccCCCcc
Q 002787 285 -EKCYANDPYARGLSSDGRRT 304 (881)
Q Consensus 285 -e~~~vtDPYA~~ls~ng~~S 304 (881)
++.+++||||++|+.+...+
T Consensus 81 ~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 81 DPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred CCCcEEECCCcCeEcCccccC
Confidence 34679999999998765544
No 44
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.50 E-value=5.8e-14 Score=126.20 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=67.2
Q ss_pred ccEEeC-CeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceee
Q 002787 211 GALYAE-ETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCY 288 (881)
Q Consensus 211 Ga~~~~-~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~ 288 (881)
||++.+ ++++|+||||+|++|+|++|+ . ..++| +..+|+|++++++. .|.+|.|+|+. ...
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~-~------~~~~m~~~~~G~W~~~v~~~-~g~~Y~y~v~~---------~~~ 63 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD-G------EEIPMQRDGDGWFEAEVPGA-AGTRYRYRLDD---------GTP 63 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC-C------CcccCccCCCcEEEEEeCCC-CCCeEEEEECC---------CcC
Confidence 788887 899999999999999999985 1 24678 67889999999999 99999999961 247
Q ss_pred ecCccccccc--cCCCcceEeeC
Q 002787 289 ANDPYARGLS--SDGRRTLLVNL 309 (881)
Q Consensus 289 vtDPYA~~ls--~ng~~S~vvDl 309 (881)
++||||+++. .++ .|+|+|+
T Consensus 64 ~~DP~a~~~~~~~~~-~s~v~~~ 85 (85)
T cd02853 64 VPDPASRFQPEGVHG-PSQVVDP 85 (85)
T ss_pred CCCCccccCCCCCCC-CeEeeCc
Confidence 8999999963 444 5888764
No 45
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.49 E-value=3.5e-14 Score=171.86 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=72.3
Q ss_pred cccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhh
Q 002787 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (881)
Q Consensus 358 G~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (881)
++|.++++ +|+||++||||||||+|+++...
T Consensus 17 ~tf~~~~~-------~l~YL~~LGis~IyLsPi~~a~~------------------------------------------ 47 (879)
T PRK14511 17 FTFDDAAE-------LVPYFADLGVSHLYLSPILAARP------------------------------------------ 47 (879)
T ss_pred CCHHHHHH-------HhHHHHHcCCCEEEECcCccCCC------------------------------------------
Confidence 67777655 59999999999999999997632
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCC
Q 002787 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (881)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~ 517 (881)
+.+||||+.+|+.+++.||+. ++|++||++||++||+||||+|+||++.
T Consensus 48 ------------------------gs~hGYdv~D~~~idp~lGt~-------e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 48 ------------------------GSTHGYDVVDHTRINPELGGE-------EGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred ------------------------CCCCCCCcCCCCCcCCCCCCH-------HHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 358999999999999999994 5899999999999999999999999997
Q ss_pred CC
Q 002787 518 SG 519 (881)
Q Consensus 518 ~g 519 (881)
++
T Consensus 97 ~~ 98 (879)
T PRK14511 97 GG 98 (879)
T ss_pred cC
Confidence 54
No 46
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.44 E-value=3.3e-13 Score=120.37 Aligned_cols=79 Identities=38% Similarity=0.703 Sum_probs=62.1
Q ss_pred CCccEEeCC--eeEEEEEcCCCCeEEEEEeeCCCCCCCceEEecc--cCCCEEEEEcCCCCC-C-cEEEEEEEeecCCCc
Q 002787 209 PLGALYAEE--TVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWE-G-CYYVYEVSVYHPSAL 282 (881)
Q Consensus 209 ~LGa~~~~~--~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M~--~~~GvWsv~v~~~~~-G-~~Y~Y~V~~~~p~~g 282 (881)
|||+++.++ +++|+||||+|++|+|+++... . .+.+.++|. ..+|+|+++++..+. | .+|+|+|+..+ |
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~-~-~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~---g 75 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG-S-WPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD---G 75 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT-S-SEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT---T
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee-c-CCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC---C
Confidence 799999986 9999999999999999998765 2 345788894 689999999995544 5 69999999743 2
Q ss_pred ccceeeecCccc
Q 002787 283 QIEKCYANDPYA 294 (881)
Q Consensus 283 ~~e~~~vtDPYA 294 (881)
++..+.||||
T Consensus 76 --~~~~~~DPYA 85 (85)
T PF02922_consen 76 --ETPEVVDPYA 85 (85)
T ss_dssp --EEEEET-TT-
T ss_pred --cEEEEeCCCC
Confidence 4678999997
No 47
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.41 E-value=1.4e-13 Score=175.37 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=70.5
Q ss_pred cccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhh
Q 002787 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (881)
Q Consensus 358 G~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (881)
++|.+++ ++|+||++||||||||+|||+...
T Consensus 755 ~tf~~~~-------~~l~Yl~~LGv~~i~lsPi~~a~~------------------------------------------ 785 (1693)
T PRK14507 755 FTFADAE-------AILPYLAALGISHVYASPILKARP------------------------------------------ 785 (1693)
T ss_pred CCHHHHH-------HHhHHHHHcCCCEEEECCCcCCCC------------------------------------------
Confidence 6676655 459999999999999999998532
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCC
Q 002787 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (881)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~ 517 (881)
+.+||||+.+|+.+++.||+. ++|++||++||++||+||||+|+||++.
T Consensus 786 ------------------------gs~hGYdv~D~~~idp~lG~~-------edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 786 ------------------------GSTHGYDIVDHSQINPEIGGE-------EGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred ------------------------CCCCCCCCCCCCccCcccCCH-------HHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 258999999999999999994 5799999999999999999999999983
No 48
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.16 E-value=2e-10 Score=106.26 Aligned_cols=84 Identities=30% Similarity=0.365 Sum_probs=65.6
Q ss_pred CCccEEeC----CeeEEEEEcCCCCeEEEEE-eeCCCCCCCceEEec-c-cCCCEEEEEcCCCCCCcEEEEEEEeecCCC
Q 002787 209 PLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-K-ENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (881)
Q Consensus 209 ~LGa~~~~----~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~-~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~ 281 (881)
.||+++.+ ++++|+||+|+|++|+|++ ++++.. ..++| + ...|+|++.++....|.+|+|+|+...
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~----~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~--- 81 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDG----RRHPMRRRGDSGVWELFIPGLGEGELYKYEILGAD--- 81 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCC----cceecEECCCCCEEEEEECCCCCCCEEEEEEECCC---
Confidence 59999988 8999999999999999996 544322 23567 3 348999999998888889999997521
Q ss_pred cccceeeecCccccccccCC
Q 002787 282 LQIEKCYANDPYARGLSSDG 301 (881)
Q Consensus 282 g~~e~~~vtDPYA~~ls~ng 301 (881)
+ ....+.||||+.++.+.
T Consensus 82 g--~~~~~~DPYa~~~~~~~ 99 (106)
T cd02855 82 G--HLPLKADPYAFYSELRP 99 (106)
T ss_pred C--CEEEeeCCCceeeEeCC
Confidence 1 23568999999987653
No 49
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.15 E-value=1.1e-10 Score=108.33 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=61.0
Q ss_pred eCCeeEEEEEcCCCCeEEEE-EeeCCCCCCCceEEec-ccCCCEEEEEcCCC-------CCCcEEEEEEEeecCCCcccc
Q 002787 215 AEETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKS-------WEGCYYVYEVSVYHPSALQIE 285 (881)
Q Consensus 215 ~~~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~-------~~G~~Y~Y~V~~~~p~~g~~e 285 (881)
.+++++|+||||+|++|+|+ -|++++. ..++| +...|+|+++++++ .+|.+|+|+|.... | +
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~----~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~---G--~ 73 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDR----NAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPS---G--E 73 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCC----cCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCC---C--C
Confidence 35689999999999999999 4665542 34678 55789999999985 48999999998621 3 4
Q ss_pred eeeecCccccccccC
Q 002787 286 KCYANDPYARGLSSD 300 (881)
Q Consensus 286 ~~~vtDPYA~~ls~n 300 (881)
..++.||||+.+..+
T Consensus 74 ~~~~~DPyA~~~~~~ 88 (99)
T cd02854 74 WIDRIPAWIKYVTQD 88 (99)
T ss_pred EEEEcCcceeEEEeC
Confidence 578999999998754
No 50
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.08 E-value=1.1e-10 Score=145.63 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccch
Q 002787 356 FRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFA 435 (881)
Q Consensus 356 ~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (881)
.-|+|.+. .+||++|+++|+|.|||+||++...
T Consensus 127 ~mG~~~~w-------~~~L~~ik~lGyN~IhftPI~~~G~---------------------------------------- 159 (1464)
T TIGR01531 127 LLGPLSEW-------EPRLRVAKEKGYNMIHFTPLQELGG---------------------------------------- 159 (1464)
T ss_pred hcCCHHHH-------HHHHHHHHHcCCCEEEeCCCccCCC----------------------------------------
Confidence 34888655 4579999999999999999997652
Q ss_pred hhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhc-CCEEEEEeeccc
Q 002787 436 DAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHI-GLHVVLDVVYNH 514 (881)
Q Consensus 436 ~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~-GirVIlDVVyNH 514 (881)
.|+.|+..+|+.+++.++... ...++|++||+++|+. ||+||+|+|+||
T Consensus 160 ---------------------------SnS~Ysi~Dyl~idP~~~~~~---~~~~d~~~lV~~~h~~~Gm~~ilDvV~NH 209 (1464)
T TIGR01531 160 ---------------------------SNSCYSLYDQLQLNQHFKSQK---DGKNDVQALVEKLHRDWNVLSITDIVFNH 209 (1464)
T ss_pred ---------------------------CCCCccccchhhcChhhcccC---CcHHHHHHHHHHHHHhcCCEEEEEeeecc
Confidence 478899999999999998521 1246899999999996 999999999999
Q ss_pred cCCCCCCC
Q 002787 515 LQGSGPFD 522 (881)
Q Consensus 515 t~~~g~~~ 522 (881)
|+.+++|.
T Consensus 210 Ta~ds~Wl 217 (1464)
T TIGR01531 210 TANNSPWL 217 (1464)
T ss_pred cccCCHHH
Confidence 99876653
No 51
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=2.9e-10 Score=133.17 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=68.1
Q ss_pred hhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChH
Q 002787 370 GVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTE 449 (881)
Q Consensus 370 ~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~ 449 (881)
...-|+||++|||.|+|+.|||....
T Consensus 21 A~~~l~yl~~LGIShLY~SPIftA~p------------------------------------------------------ 46 (889)
T COG3280 21 ARALLDYLADLGISHLYLSPIFTARP------------------------------------------------------ 46 (889)
T ss_pred HHHhhHHHHhcCchheeccchhhcCC------------------------------------------------------
Confidence 45669999999999999999997632
Q ss_pred HHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCC
Q 002787 450 QQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGS 518 (881)
Q Consensus 450 ~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~ 518 (881)
+..||||.+++..+++..|..+ -|++||+++|++||.+|+|+|.||++..
T Consensus 47 ------------GStHGYDVvD~t~InPeLGG~e-------gl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 47 ------------GSTHGYDVVDPTEINPELGGEE-------GLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred ------------CCCCCccCCCccccChhhcChH-------HHHHHHHHHHhcCCceEEEecccchhcc
Confidence 4699999999999999999954 5999999999999999999999999865
No 52
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.88 E-value=7.7e-09 Score=93.34 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=52.9
Q ss_pred CCeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccceeeecCccc
Q 002787 216 EETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYA 294 (881)
Q Consensus 216 ~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e~~~vtDPYA 294 (881)
++.++|+||||+|++|+|+++.+. ...++| +..+|+|+++++ .+.+.+|+|++.+. | ..+.||+|
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~-----~~~~~m~~~~~G~W~~~v~-~l~~g~Y~Y~~~vd----g----~~~~DP~s 70 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGG-----AGSHPMTKDEAGVWSVTTG-PLAPGIYTYSFLVD----G----VRVIDPSN 70 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCC-----CccEeCeECCCeEEEEEEC-CCCCcEEEEEEEEC----C----eEecCCCC
Confidence 457999999999999999986431 235788 567899999995 46777777777653 2 46899999
Q ss_pred cccc
Q 002787 295 RGLS 298 (881)
Q Consensus 295 ~~ls 298 (881)
+...
T Consensus 71 ~~~~ 74 (85)
T cd02858 71 PTTK 74 (85)
T ss_pred Ccee
Confidence 8754
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.37 E-value=5.6e-07 Score=110.19 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCccEEeCCeeEEEEEcCCCCeEEEE-EeeCCCCCCCceEEecc--cCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccc
Q 002787 209 PLGALYAEETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIE 285 (881)
Q Consensus 209 ~LGa~~~~~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M~--~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e 285 (881)
.||||....+++|+||||+|++|+|+ -|++ ....+|. ...|+|++.+| ...|..|+|+|.. + | +
T Consensus 20 ~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~------~~~~~m~~~~~~G~w~~~ip-~~~g~~YKy~i~~-~---g--~ 86 (726)
T PRK05402 20 VLGPHPTGAGLVVRALLPGAEEVWVILPGGG------RKLAELERLHPRGLFAGVLP-RKGPFDYRLRVTW-G---G--G 86 (726)
T ss_pred hcCCCCCCCcEEEEEECCCCeEEEEEeecCC------CccccceEcCCCceEEEEec-CCCCCCeEEEEEe-C---C--c
Confidence 59999998899999999999999998 4542 1356773 37899999999 9999999999974 2 3 3
Q ss_pred eeeecCcccccc
Q 002787 286 KCYANDPYARGL 297 (881)
Q Consensus 286 ~~~vtDPYA~~l 297 (881)
.....||||...
T Consensus 87 ~~~k~DPyaf~~ 98 (726)
T PRK05402 87 EQLIDDPYRFGP 98 (726)
T ss_pred eeEeccccccCC
Confidence 468999999964
No 54
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.21 E-value=4.8e-06 Score=72.68 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=46.5
Q ss_pred CeeEEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCCC-CCcEEEEEEEe
Q 002787 217 ETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSW-EGCYYVYEVSV 276 (881)
Q Consensus 217 ~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~-~G~~Y~Y~V~~ 276 (881)
++++|+||||.|++|+|+++.+.. ...++| ....|+|++.++... .+.+|+|+|..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~----~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~ 61 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD----TQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDG 61 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC----CCcccCEECCCceEEEEEcCCCCCCeEEEEEEeC
Confidence 579999999999999999876431 135778 566799999999888 88999999974
No 55
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.12 E-value=5.7e-06 Score=94.53 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=68.4
Q ss_pred hhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccccccCCCcccceeeecCcccchhhhhhhcCCCCChHH
Q 002787 371 VSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQ 450 (881)
Q Consensus 371 i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~ 450 (881)
.+||+..+++|+|.||+.|+.+.+.
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~------------------------------------------------------- 49 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGE------------------------------------------------------- 49 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCC-------------------------------------------------------
Confidence 5789999999999999999988753
Q ss_pred HHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHh-hcCCEEEEEeeccccCCCCCCC
Q 002787 451 QAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALN-HIGLHVVLDVVYNHLQGSGPFD 522 (881)
Q Consensus 451 q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH-~~GirVIlDVVyNHt~~~g~~~ 522 (881)
.+--|...+....++.+..+ ....+.+++++||++++ +.||.+|.|||+|||+.+.+|-
T Consensus 50 ------------S~S~YSI~Dql~~~~~~~~~-~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~Wl 109 (423)
T PF14701_consen 50 ------------SNSPYSIYDQLKFDPDFFPP-GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPWL 109 (423)
T ss_pred ------------CCCCccccchhhcChhhcCC-CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChHH
Confidence 23347777888888877764 22356889999999996 7999999999999999876654
No 56
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.08 E-value=1.2e-05 Score=72.01 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=50.5
Q ss_pred eeEEEEEcCCCCeEEEE-EeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCc-EEEEEEEeecCCCcccceeeecCccc
Q 002787 218 TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGC-YYVYEVSVYHPSALQIEKCYANDPYA 294 (881)
Q Consensus 218 ~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~-~Y~Y~V~~~~p~~g~~e~~~vtDPYA 294 (881)
.++|++|||.|++|.|. .|+.++ .++| +...|+|+++++ ...|. .|+|.|+ | ...+.||.+
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~------~~~m~~~~~G~w~~~~~-l~~G~y~Ykf~vd------g---~~~~~DP~~ 66 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN------AIPMEREGDGLWVVTVE-LRPGRYEYKFVVD------G---EWVIVDPNA 66 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC------cccCEECCCCcEEEEEe-CCCCcEEEEEEEC------C---EEeeCCCCC
Confidence 58999999999999998 576653 3678 445699999997 66677 5777764 2 123589999
Q ss_pred cccccCC
Q 002787 295 RGLSSDG 301 (881)
Q Consensus 295 ~~ls~ng 301 (881)
.....++
T Consensus 67 ~~~~~~~ 73 (82)
T cd02861 67 AAYVDDG 73 (82)
T ss_pred CceecCC
Confidence 8765544
No 57
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.79 E-value=0.00015 Score=80.65 Aligned_cols=87 Identities=21% Similarity=0.157 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCcccc--C-CCCCCCCCCChHHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEH--S-TCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~--s-tc~~d~a~e~~mv~k~i~Dsl 568 (881)
|..||+++|++||+|.-=+.+...... .+.+-+..|.++...+.+..... . ...--+|+.+|+|+++|++.+
T Consensus 72 L~~~I~eaHkrGlevHAW~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v 146 (311)
T PF02638_consen 72 LEFMIEEAHKRGLEVHAWFRVGFNAPD-----VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIV 146 (311)
T ss_pred HHHHHHHHHHcCCEEEEEEEeecCCCc-----hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHH
Confidence 999999999999999987755443221 11222334555432222221111 1 111236999999999999999
Q ss_pred HHHHHhCCceEEEEc
Q 002787 569 LCWAVNYKVDGFRFD 583 (881)
Q Consensus 569 ~~W~~eygIDGFRfD 583 (881)
+--++.|.|||..||
T Consensus 147 ~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 147 KEIVKNYDVDGIHLD 161 (311)
T ss_pred HHHHhcCCCCeEEec
Confidence 999999999999999
No 58
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.75 E-value=0.00021 Score=70.10 Aligned_cols=97 Identities=21% Similarity=0.375 Sum_probs=63.7
Q ss_pred CCCCcCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCc-
Q 002787 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF- 543 (881)
Q Consensus 465 WGYdp~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~- 543 (881)
|=|-|..-....+....+ -|++||++||++||||+.=+-++ .. .. .-+..|.|+.+ +.+|.
T Consensus 27 ~ayYPt~~~~~hp~L~~D--------llge~v~a~h~~Girv~ay~~~~-~d-------~~-~~~~HPeW~~~-~~~G~~ 88 (132)
T PF14871_consen 27 YAYYPTKVGPRHPGLKRD--------LLGEQVEACHERGIRVPAYFDFS-WD-------ED-AAERHPEWFVR-DADGRP 88 (132)
T ss_pred EEEccCCCCcCCCCCCcC--------HHHHHHHHHHHCCCEEEEEEeee-cC-------hH-HHHhCCceeeE-CCCCCC
Confidence 335555554455555532 59999999999999999754443 21 11 11235888865 34554
Q ss_pred --------cccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcC
Q 002787 544 --------IEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDL 584 (881)
Q Consensus 544 --------~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDl 584 (881)
.....||.|. ..+++++..++--++.|.+|||=||.
T Consensus 89 ~~~~~~~~~~~~~~c~ns-----~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 89 MRGERFGYPGWYTCCLNS-----PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cCCCCcCCCCceecCCCc-----cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 1234577654 24478888889988899999999984
No 59
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.95 E-value=0.0024 Score=75.95 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccC
Q 002787 476 KGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (881)
Q Consensus 476 e~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~ 516 (881)
.-.||+ .++||..|++||+.||+||-|+|.+...
T Consensus 640 ptKYGs-------~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 640 PTKYGS-------VEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp -BTTB--------HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCCCC-------HHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 456888 5689999999999999999999999875
No 60
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.0074 Score=69.40 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCcc-ccCCCC-CC--CCCCChHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFI-EHSTCM-NN--TASEHYMVERLIIDD 567 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~-~~stc~-~d--~a~e~~mv~k~i~Ds 567 (881)
+..||+++|++||+|+-=+-+--++- ..|.+-+..|.+-.... .|.+ ..+... .+ +|+.||+++++|.+.
T Consensus 117 La~~I~~AHkr~l~v~aWf~~~~~a~-----~~s~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~l 190 (418)
T COG1649 117 LAFVIAEAHKRGLEVHAWFNPYRMAP-----PTSPLTKRHPHWLTTKR-PGWVYVRHQGWGKRVWLDPGIPEVQDFITSL 190 (418)
T ss_pred HHHHHHHHHhcCCeeeechhhcccCC-----CCChhHhhCCCCcccCC-CCeEEEecCCceeeeEeCCCChHHHHHHHHH
Confidence 99999999999999986544432221 12333333333332211 1111 111111 23 489999999999999
Q ss_pred HHHHHHhCCceEEEEcCC
Q 002787 568 LLCWAVNYKVDGFRFDLM 585 (881)
Q Consensus 568 l~~W~~eygIDGFRfDlm 585 (881)
+.--++.|.|||.-||=-
T Consensus 191 v~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 191 VVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred HHHHHhCCCCCceeccee
Confidence 999999999999999854
No 61
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=96.25 E-value=0.0014 Score=80.75 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=61.2
Q ss_pred EEeeeccccchhhhhhc-C----------------------CCeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCC
Q 002787 745 ISYVSAHDNETLFDVVS-L----------------------KGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSN 801 (881)
Q Consensus 745 INYVs~HDn~tL~D~l~-~----------------------kGiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~n 801 (881)
.|.+++||+.++...+. . .|||.||||+|+++....| +|-..+|||.....
T Consensus 617 ~~lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~slvD------PDNRRpvd~~~r~~ 690 (825)
T TIGR02401 617 DAVLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSLVD------PDNRRPVDYAARRA 690 (825)
T ss_pred HHHcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCC------CCccCCCChHHHHH
Confidence 56788999887654322 1 1999999999999864333 34456788864221
Q ss_pred CCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-cccCCHHHHh
Q 002787 802 NWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPL-FRLRTANAIQ 865 (881)
Q Consensus 802 n~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Ll~lRkssp~-lrlgt~~~I~ 865 (881)
... .|. ...|. .++ ....+-...+.++++||+||+++|. |+.|+++.+.
T Consensus 691 ~L~-~l~-----~~~~~---~l~------~~~~dg~~Kl~~i~~lL~lRr~~p~lF~~G~y~pL~ 740 (825)
T TIGR02401 691 ALL-QLT-----TPNWS---ELE------LWLLDGLVKLAVTAAALQLRREHPELFGQGDYQPLE 740 (825)
T ss_pred HHH-hhh-----cccch---hhh------ccccccHHHHHHHHHHHHHHHhCHHhhhcCCeEEEe
Confidence 100 000 00011 111 1122345678899999999999996 7999877554
No 62
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.05 E-value=0.033 Score=66.69 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCc-ccc---CC-C---CCCCCCCChH
Q 002787 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF-IEH---ST-C---MNNTASEHYM 559 (881)
Q Consensus 488 ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~-~~~---st-c---~~d~a~e~~m 559 (881)
...-.|+.|+++|+.||+++. ||=..+.. ....-+.+.|.|+...+..+. ... .. . .--+|+.|+.
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~---Ynmiyaa~---~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~ 241 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMA---YNMIYAAN---NNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPE 241 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEE---EEESSEEE---TT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HH
T ss_pred hHHHHHHHHHHHHHcCcceeh---hHhhhccc---cCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHH
Confidence 366799999999999999986 44443211 111224455666655544431 110 00 0 1234899999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEcCCCcc
Q 002787 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHI 588 (881)
Q Consensus 560 v~k~i~Dsl~~W~~eygIDGFRfDlm~h~ 588 (881)
.+++|+.-+...++.+|+|||.+|.+|..
T Consensus 242 WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 242 WQNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 99999999999999999999999999854
No 63
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.01 E-value=0.023 Score=64.13 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCC-CCCCC--CCccCCCCCCCceecCCCCccc-----cCCCCCCCCCCChHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGS-GPFDD--NSVLDKVVPGYYLRRNSDGFIE-----HSTCMNNTASEHYMVERL 563 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~-g~~~~--~s~lDk~vP~YY~r~~~~G~~~-----~stc~~d~a~e~~mv~k~ 563 (881)
.++||+.||++|++|++=|.. |...+ .+... ........-+|+.+ +.+|... +...+.-+|..||.+++.
T Consensus 87 p~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk-~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 87 PKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQ-RGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred HHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEE-cCCCCccccccccCCCceeecCCCHHHHHH
Confidence 999999999999999984433 32210 11000 00000111245543 2334321 112234568999999999
Q ss_pred HHHHHHHHHHhCCceEEEEcCCC
Q 002787 564 IIDDLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 564 i~Dsl~~W~~eygIDGFRfDlm~ 586 (881)
..+-++.+++++|||||-+|...
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCC
Confidence 99999999999999999999664
No 64
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.0096 Score=72.47 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=35.4
Q ss_pred cCCCcCCCCCCCCCCCchHHHHHHHHHHHh-hcCCEEEEEeeccccCCCCCC
Q 002787 471 LWGVPKGSYASNPNGSCRTIEFRRMVQALN-HIGLHVVLDVVYNHLQGSGPF 521 (881)
Q Consensus 471 ~y~ape~sYgt~~dg~~ri~Efr~mV~alH-~~GirVIlDVVyNHt~~~g~~ 521 (881)
+|+.|+..|+- ++.+++|+.|| +-||--|-|||||||+.+.+|
T Consensus 185 ~~~~~~~k~s~--------eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 185 DFSRPNRKYSF--------EDVGQLVEKLKREWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred hhhccCCCCCH--------HHHHHHHHHHHhhcCeeeeehhhhhccccCCch
Confidence 44578888874 47999999999 569999999999999976554
No 65
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.40 E-value=0.024 Score=63.36 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCcccc----CCCCCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~D 566 (881)
.++||+.||++|++||+-+ -.|...+.. ..++. ..-+|+.+. .+|.... ..-+.-+|..||..++...+
T Consensus 73 p~~mi~~Lh~~G~~~~~~i-~P~v~~~~~----~~y~~~~~~g~~vk~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 73 LDELIEELKARGIRVLTYI-NPYLADDGP----LYYEEAKDAGYLVKD-ADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred HHHHHHHHHHCCCEEEEEe-cCceecCCc----hhHHHHHHCCeEEEC-CCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 8999999999999999954 455533211 00111 112455432 3332111 12234568999999999999
Q ss_pred HHHHHHHhCCceEEEEcCCCcc
Q 002787 567 DLLCWAVNYKVDGFRFDLMGHI 588 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDlm~h~ 588 (881)
-++....++|||||=+|.-..+
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHHHhhhcCCcEEEecCCCCC
Confidence 9999878899999999966543
No 66
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=95.19 E-value=0.14 Score=59.15 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCC--CCCCChHHHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNN--TASEHYMVERLIIDDLL 569 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d--~a~e~~mv~k~i~Dsl~ 569 (881)
|+.|++.+|++||+.=|=+-.--++. .|.+-+..|.|..+.. +. ....+.+. ++..||.|+++|.+.+.
T Consensus 106 l~~l~~~i~~~Gmk~GlW~ePe~v~~------~S~l~~~hPdw~l~~~-~~--~~~~~r~~~vLD~~~pev~~~l~~~i~ 176 (394)
T PF02065_consen 106 LKPLADYIHSLGMKFGLWFEPEMVSP------DSDLYREHPDWVLRDP-GR--PPTLGRNQYVLDLSNPEVRDYLFEVID 176 (394)
T ss_dssp HHHHHHHHHHTT-EEEEEEETTEEES------SSCHCCSSBGGBTCCT-TS--E-ECBTTBEEB-TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEeccccccc------hhHHHHhCccceeecC-CC--CCcCcccceEEcCCCHHHHHHHHHHHH
Confidence 99999999999999998876654432 3445555677664421 11 11122232 68899999999999999
Q ss_pred HHHHhCCceEEEEcCCCcc
Q 002787 570 CWAVNYKVDGFRFDLMGHI 588 (881)
Q Consensus 570 ~W~~eygIDGFRfDlm~h~ 588 (881)
..++++|||.|.+|....+
T Consensus 177 ~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 177 RLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp HHHHHTT-SEEEEE-TS-T
T ss_pred HHHHhcCCCEEEeccccCC
Confidence 9999999999999998655
No 67
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.17 E-value=0.041 Score=61.11 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCcc--c--c-CCCCCCCCCCChHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFI--E--H-STCMNNTASEHYMVERLI 564 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~--~--~-stc~~d~a~e~~mv~k~i 564 (881)
++++||+.+|++|++|++=+-. +..... ..+.. ...+|+.+. .+|.. . . ...+.-+|..||.+++.+
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s-----~~~~e~~~~g~~vk~-~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~ 143 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDS-----ENFREAVEKGYLVSE-PSGDIPALTRWWNGTAAVLDFTNPEAVDWF 143 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCC-----HHHHhhhhCCeEEEC-CCCCCCcccceecCCcceEeCCCHHHHHHH
Confidence 3899999999999999997665 333221 11221 223565543 33311 1 1 123445689999999999
Q ss_pred HHHHHHHHHhCCceEEEEcCCC
Q 002787 565 IDDLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 565 ~Dsl~~W~~eygIDGFRfDlm~ 586 (881)
.+-++..+.++|||||-+|...
T Consensus 144 ~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 144 LSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHHHHhCCcEEEeCCCC
Confidence 9999999989999999999764
No 68
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=94.87 E-value=0.44 Score=50.87 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHhhcCCEEEEEeecc
Q 002787 487 CRTIEFRRMVQALNHIGLHVVLDVVYN 513 (881)
Q Consensus 487 ~ri~Efr~mV~alH~~GirVIlDVVyN 513 (881)
..++.|+++|++|+++||+||+|+--.
T Consensus 59 ~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 59 TYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 457889999999999999999986543
No 69
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=94.82 E-value=0.02 Score=71.38 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=48.3
Q ss_pred cCCCeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccCCCCcccccCcCCCCCCCcchhhHHHHH
Q 002787 761 SLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAAL 840 (881)
Q Consensus 761 ~~kGiPfiy~GdE~grSksgd~dsY~sgDw~N~~dw~~~~nn~~~Glp~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~ 840 (881)
+..|||.||||+|++...- .| +|...++||......- ..|. ...+.....+-...+
T Consensus 712 T~PGVPdIYqG~E~wd~sl--vD----PDNRRpvd~~~r~~~L-~~l~-----------------~~~~~~~~~dg~~kl 767 (879)
T PRK14511 712 TSPGVPDVYQGTELWDFSL--VD----PDNRRPVDFAARAAAL-ARLD-----------------EGAELLPWDDGRIKL 767 (879)
T ss_pred CcCCCCcccCcccchhccC--CC----CCCCCCCChHHHHHHH-hhcc-----------------cccccccCCcchHHH
Confidence 3449999999999997633 23 3445677886421000 0000 000011112233457
Q ss_pred HHHHHHHHHHhcCccc-ccCCHHHHhc
Q 002787 841 ENFSDVLRIRYSSPLF-RLRTANAIQV 866 (881)
Q Consensus 841 ~~~k~Ll~lRkssp~l-rlgt~~~I~~ 866 (881)
.++++||+||+++|+| +.|++..+..
T Consensus 768 ~~~~~lL~lRr~~p~Lf~~G~y~pL~~ 794 (879)
T PRK14511 768 LLIARALRLRRDRPELFAGGEYLPLEV 794 (879)
T ss_pred HHHHHHHHHHHhCHHHhhCCceEEEEe
Confidence 8899999999999998 4588766543
No 70
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=94.60 E-value=0.073 Score=59.02 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCccccCC----CCCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHST----CMNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~st----c~~d~a~e~~mv~k~i~D 566 (881)
.++||+++|++|++|++-+.. +.+.+.+ .+++ ..++|+.+. .+|...... -+.-+|..||++++.+.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~-----~~~e~~~~g~~v~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 140 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP-----LFKEAAEKGYLVKK-PDGSVWQWDLWQPGMGIIDFTNPDACKWYKD 140 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch-----hHHHHHHCCeEEEC-CCCCeeeecccCCCcccccCCCHHHHHHHHH
Confidence 899999999999999998864 4433211 2222 224666543 334322211 123468999999999999
Q ss_pred HHHHHHHhCCceEEEEcCCCcccH
Q 002787 567 DLLCWAVNYKVDGFRFDLMGHIMK 590 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDlm~h~~~ 590 (881)
-++.+.+ +|||||-+|....+|.
T Consensus 141 ~~~~~~~-~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 141 KLKPLLD-MGVDCFKTDFGERIPT 163 (308)
T ss_pred HHHHHHH-hCCcEEecCCCCCCCc
Confidence 9998765 7999999998876554
No 71
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=94.55 E-value=0.029 Score=67.19 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=63.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHH---------hCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCC-----Cce
Q 002787 550 MNNTASEHYMVERLIIDDLLCWAV---------NYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDG-----SSI 615 (881)
Q Consensus 550 ~~d~a~e~~mv~k~i~Dsl~~W~~---------eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g-----~~~ 615 (881)
.+|++-.||.|+..-+.+|-|.+. +..+||||+|++.++..+.++.+.+.+++... ++. -.-
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYg----v~~~~a~An~H 218 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYG----VDKNDANANKH 218 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-----TTTBHHHHCTC
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhC----CCcChhhHhhh
Confidence 467788999999999999999886 78999999999999999988888877776542 221 123
Q ss_pred EEEeccCCCcccccccCCCccccccCCCCcceecchHHHHHhcC
Q 002787 616 YIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLG 659 (881)
Q Consensus 616 ~l~GE~Wd~gev~~~~~~~~a~Q~n~~gtgig~fnDr~Rdavrg 659 (881)
+-|=|.|.......... ....|+ ++.+.+|-++..
T Consensus 219 lSilE~ws~nd~~y~~~-~g~~qL--------~mD~~~~~~l~~ 253 (809)
T PF02324_consen 219 LSILEAWSSNDPDYVKD-TGNPQL--------TMDNGLRLALLY 253 (809)
T ss_dssp --EESSSTTTHHHHHHH-TTSSSB--------EEEHHHHHHHHH
T ss_pred heeeeccccCChHHHhc-CCCcee--------eecHHHHHHHHH
Confidence 55779998765321111 112233 345667777664
No 72
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.48 E-value=0.075 Score=59.42 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCC-CCCCceecCCCCcc-cc---C-CCCCCCCCCChHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFI-EH---S-TCMNNTASEHYMVERLII 565 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~-vP~YY~r~~~~G~~-~~---s-tc~~d~a~e~~mv~k~i~ 565 (881)
.++||+.||++|++|++-+. .+.....+ .++.. .-+|+-+.. +|.. .. + ..+.-+|..||..++...
T Consensus 75 p~~mi~~L~~~g~k~~~~i~-P~i~~~~~-----~y~e~~~~g~~v~~~-~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~ 147 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIK-PGLLQDHP-----RYKELKEAGAFIKPP-DGREPSIGQFWGGVGSFVDFTNPEGREWWK 147 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeC-CcccCCCH-----HHHHHHHCCcEEEcC-CCCCcceecccCCCeEeecCCChHHHHHHH
Confidence 88999999999999998553 33322111 11111 124554332 2221 11 1 112246889999999999
Q ss_pred HHHHHHHHhCCceEEEEcCC
Q 002787 566 DDLLCWAVNYKVDGFRFDLM 585 (881)
Q Consensus 566 Dsl~~W~~eygIDGFRfDlm 585 (881)
.-++.-+.+.|||||=+|..
T Consensus 148 ~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 148 EGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred HHHHHHHhcCCCcEEEecCC
Confidence 98877778899999999955
No 73
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=94.38 E-value=0.085 Score=59.02 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCC-CCCCceecCCCCcc-cc-C-CCCCCCCCCChHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFI-EH-S-TCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~-vP~YY~r~~~~G~~-~~-s-tc~~d~a~e~~mv~k~i~Ds 567 (881)
.++||+.||++|++||+-+. .+..... ..++.. .-+|+.+.. +|.. .. + .-+.-++..||..++...+-
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~-----~~y~e~~~~g~~v~~~-~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 140 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPET-----ENYKEMDEKGYLIKTD-RGPRVTMQFGGNTRFYDATNPEAREYYWKQ 140 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCC-----hhHHHHHHCCEEEEcC-CCCeeeeeCCCCccccCCCCHHHHHHHHHH
Confidence 78999999999999999543 4443211 111111 124554432 2221 11 1 11235689999999988887
Q ss_pred HHHHHHhCCceEEEEcCCC
Q 002787 568 LLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 568 l~~W~~eygIDGFRfDlm~ 586 (881)
++.-+.++|||||=+|.-.
T Consensus 141 ~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 141 LKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHHHhhcCCCcEEEecCCC
Confidence 7766778999999999774
No 74
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=93.92 E-value=0.16 Score=56.84 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCc-cccCCCCCCCCCCChHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF-IEHSTCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~-~~~stc~~d~a~e~~mv~k~i~Ds 567 (881)
|.++++||+.||++||.+|-=+|. ++...+-+..|.|.. ...+|. +.+.....=+++-++++++|+++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~---------FkD~~la~~~pe~av-~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~I 129 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVV---------FKDPVLAEAHPEWAV-KTKDGSVWRDNEGEAWVNPYSKEVWDYNIDI 129 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEE---------ecChHHhhhChhhEE-ECCCCCcccCCCCCccCCCCCHHHHHHHHHH
Confidence 567999999999999999998886 233445555677776 334443 333333444688999999999999
Q ss_pred HHHHHHhCCceEEEEcCCC
Q 002787 568 LLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 568 l~~W~~eygIDGFRfDlm~ 586 (881)
.+-.+ ..|+|..-||=+.
T Consensus 130 A~Eaa-~~GFdEIqfDYIR 147 (316)
T PF13200_consen 130 AKEAA-KLGFDEIQFDYIR 147 (316)
T ss_pred HHHHH-HcCCCEEEeeeee
Confidence 99977 5699999988663
No 75
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=93.68 E-value=0.16 Score=57.46 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=59.6
Q ss_pred HHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCcccc----CCCCCCCCCCChHHHHHHHHH
Q 002787 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 493 r~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~Ds 567 (881)
++||+.||++|++||+=+. .|...+........++. ..-+||-+ +.+|.... ...+.-.|..||..++...+-
T Consensus 69 ~~mi~~L~~~G~k~~~~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 146 (339)
T cd06602 69 PEFVDELHANGQHYVPILD-PAISANEPTGSYPPYDRGLEMDVFIK-NDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDE 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEe-CccccCcCCCCCHHHHHHHHCCeEEE-CCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHH
Confidence 9999999999999999654 33322100001112221 22356654 33443211 122334689999999999999
Q ss_pred HHHHHHhCCceEEEEcCCC
Q 002787 568 LLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 568 l~~W~~eygIDGFRfDlm~ 586 (881)
++..+.++|||||=+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 147 IKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHHhcCCCcEEEecCCC
Confidence 9999988999999999664
No 76
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=93.35 E-value=0.15 Score=57.05 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCcc-CCCCCCCceecCCCCccc--cCCC--CCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-DKVVPGYYLRRNSDGFIE--HSTC--MNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~l-Dk~vP~YY~r~~~~G~~~--~stc--~~d~a~e~~mv~k~i~D 566 (881)
.++||+.||++|++||+=+. .|...+.. ...+ +...-+||.+. .+|... .... +.-.|..||..++...+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~-P~i~~~~~---~~~~~~~~~~~~~v~~-~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~ 140 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVD-PGIRVDQN---YSPFLSGMDKGKFCEI-ESGELFVGKMWPGTTVYPDFTNPDTREWWAG 140 (317)
T ss_pred HHHHHHHHHHCCCEEEEEee-ccccCCCC---ChHHHHHHHCCEEEEC-CCCCeEEEeecCCCccccCCCChHHHHHHHH
Confidence 88999999999999998553 33322110 1111 11123566442 333311 1111 12358899999999999
Q ss_pred HHHHHHHhCCceEEEEcCCC
Q 002787 567 DLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDlm~ 586 (881)
-++..+.++|||||=+|.-.
T Consensus 141 ~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 141 LFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHHhhcCCCceEEeeCCC
Confidence 99988888999999999654
No 77
>PLN02960 alpha-amylase
Probab=92.44 E-value=0.14 Score=63.79 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=47.7
Q ss_pred CCccEEeC-CeeEEEEEcCCCCeEEEE-EeeCCCCCCCc-eEEec-ccCCCEEEEEcCCC-CCC--------cEEEEEEE
Q 002787 209 PLGALYAE-ETVSLYLWAPTAQSVSAC-IYRDPLGGNPL-EVVQL-KENDGVWSIKGPKS-WEG--------CYYVYEVS 275 (881)
Q Consensus 209 ~LGa~~~~-~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~-~~~~M-~~~~GvWsv~v~~~-~~G--------~~Y~Y~V~ 275 (881)
.||+|... .+|.|++|||.|+.|+|+ .||.|+..+.. +.=-| +.+-|+|.+.++.. .+| +.|.|..+
T Consensus 119 ~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 119 LLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred HhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 58999886 499999999999999999 88888652211 11123 56779999999743 333 34777554
No 78
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.42 E-value=0.24 Score=55.42 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCC-CCCCceecCCCCccccC----CCCCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFIEHS----TCMNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~-vP~YY~r~~~~G~~~~s----tc~~d~a~e~~mv~k~i~D 566 (881)
.++||+.||++|++|++=|. .+...+.+ .++.. .-+|+.....+|..... ..+.-++..||++++...+
T Consensus 72 p~~mi~~L~~~G~k~~~~v~-P~v~~~~~-----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 145 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITE-PFVLKNSK-----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHD 145 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEc-CcccCCch-----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHH
Confidence 78999999999999999764 23322111 11111 12453333333332111 1123457889999999999
Q ss_pred HHHHHHHhCCceEEEEcCCC
Q 002787 567 DLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDlm~ 586 (881)
.++.. .++|||||=+|.-.
T Consensus 146 ~~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 146 NYKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHHh-hhCCccEEEecCCC
Confidence 88886 67899999999653
No 79
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=92.08 E-value=0.4 Score=42.82 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCCeEEEE-EeeCCCCCCCceEEec-ccCCCEEEEEcCCCCCCc-EEEEEEEeecCCCcccceeeecCccc
Q 002787 218 TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGC-YYVYEVSVYHPSALQIEKCYANDPYA 294 (881)
Q Consensus 218 ~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~G~-~Y~Y~V~~~~p~~g~~e~~~vtDPYA 294 (881)
.|+|+..+ .|++|.|. -|+.+. + .++| +..+| |++.++ ...|. .|+|.|+. ..+.||-.
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~---~--~~pm~~~~~~-~~~~~~-L~~g~y~YkF~Vdg----------~w~~d~~~ 64 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWK---K--KIPLEKSGKG-FSATLR-LPPGKYQYKFIVDG----------EWRHSPDL 64 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCC---c--cccceECCCC-cEEEEE-cCCCCEEEEEEECC----------EEEeCCCC
Confidence 48999999 89999998 676654 2 4789 44445 999885 45565 47777642 35677743
Q ss_pred c
Q 002787 295 R 295 (881)
Q Consensus 295 ~ 295 (881)
.
T Consensus 65 ~ 65 (79)
T cd02859 65 P 65 (79)
T ss_pred C
Confidence 3
No 80
>PRK10426 alpha-glucosidase; Provisional
Probab=92.08 E-value=0.81 Score=56.08 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=59.9
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCcccc----CCCCCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~D 566 (881)
.++||+.||++|++||+=+-. |...+ ...++. ..-+|+-. +.+|.... ...|.-.|..||..++...+
T Consensus 271 p~~mi~~L~~~G~k~v~~i~P-~v~~~-----~~~y~e~~~~gy~vk-~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~ 343 (635)
T PRK10426 271 LDSRIKQLNEEGIQFLGYINP-YLASD-----GDLCEEAAEKGYLAK-DADGGDYLVEFGEFYAGVVDLTNPEAYEWFKE 343 (635)
T ss_pred HHHHHHHHHHCCCEEEEEEcC-ccCCC-----CHHHHHHHHCCcEEE-CCCCCEEEeEecCCCceeecCCCHHHHHHHHH
Confidence 899999999999999987543 33221 111211 11255543 33343211 11234568999999999999
Q ss_pred HHHHHHHhCCceEEEEcCCCccc
Q 002787 567 DLLCWAVNYKVDGFRFDLMGHIM 589 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDlm~h~~ 589 (881)
-++..+.++|||||=.|.-..+|
T Consensus 344 ~~~~~~~~~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 344 VIKKNMIGLGCSGWMADFGEYLP 366 (635)
T ss_pred HHHHHHhhcCCCEEeeeCCCCCC
Confidence 88888888999999888655433
No 81
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=90.86 E-value=0.99 Score=42.20 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=41.9
Q ss_pred CCccEEeCCeeEEEEEcCC--CCeEEEEEeeCCCCCCCceEEecc--cC---CCEEEEEcCCCCCCcEEEEEEE
Q 002787 209 PLGALYAEETVSLYLWAPT--AQSVSACIYRDPLGGNPLEVVQLK--EN---DGVWSIKGPKSWEGCYYVYEVS 275 (881)
Q Consensus 209 ~LGa~~~~~~v~F~vWAPt--A~~V~L~ly~~~~~~~~~~~~~M~--~~---~GvWsv~v~~~~~G~~Y~Y~V~ 275 (881)
|+|| +.++|||+++. +++|.|++.++... .....++|. .. ...|+++++....-..|.|+|.
T Consensus 12 p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~-~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~ 80 (116)
T cd02857 12 PYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDK-GEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELV 80 (116)
T ss_pred EcCC----CEEEEEEEecCCCccEEEEEEECCCCC-CCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEE
Confidence 7787 78999999885 57888887765311 112467782 22 2479999986554446888885
No 82
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=90.53 E-value=0.2 Score=58.12 Aligned_cols=92 Identities=23% Similarity=0.255 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCcccc----CCCCCCCCCCChHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLII 565 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~ 565 (881)
++++|++.||++|++|++-+... ...... ....++. ...+|+.+ +.+|.... ...+.-+|..|+..++...
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~-v~~~~~--~~~~~~~~~~~~~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~ 159 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPF-VSNDSP--DYENYDEAKEKGYLVK-NPDGSPYIGRVWPGKGGFIDFTNPEARDWWK 159 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESE-EETTTT--B-HHHHHHHHTT-BEB-CTTSSB-EEEETTEEEEEB-TTSHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeecc-cCCCCC--cchhhhhHhhcCceee-cccCCcccccccCCcccccCCCChhHHHHHH
Confidence 49999999999999999987763 322211 0011111 11355544 33442111 1113345889999999999
Q ss_pred HHHHHHHHhCCceEEEEcCCC
Q 002787 566 DDLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 566 Dsl~~W~~eygIDGFRfDlm~ 586 (881)
+-++..+..+|||||-+|...
T Consensus 160 ~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 160 EQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHTTST-SEEEEESTT
T ss_pred HHHHHHHhccCCceEEeecCC
Confidence 999999998999999999943
No 83
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=90.32 E-value=1.6 Score=46.95 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHH
Q 002787 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (881)
++++++|+.+|++|+||++=+-.+|.... + .....+.-++-+.++++
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------------~------------------~~~~~~~~~~~fa~~l~ 97 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAG---------------F------------------ANNLSDAAAKAYAKAIV 97 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCC---------------c------------------cccCCHHHHHHHHHHHH
Confidence 57899999999999999998876654210 0 00122344666777888
Q ss_pred HHHHhCCceEEEEcCCC
Q 002787 570 CWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 570 ~W~~eygIDGFRfDlm~ 586 (881)
.++++||+||+-+|.-.
T Consensus 98 ~~v~~yglDGiDiD~E~ 114 (255)
T cd06542 98 DTVDKYGLDGVDFDDEY 114 (255)
T ss_pred HHHHHhCCCceEEeeee
Confidence 99999999999999753
No 84
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=90.32 E-value=0.88 Score=51.88 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=51.3
Q ss_pred HHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHH
Q 002787 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWA 572 (881)
Q Consensus 493 r~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~ 572 (881)
.++|..+|++|++|++..-+. . ....++..|+-++++++.++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~----------~----------------------------~~l~~~~~R~~fi~siv~~~ 108 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP----------L----------------------------EQISNPTYRTQWIQQKVELA 108 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC----------H----------------------------HHcCCHHHHHHHHHHHHHHH
Confidence 488999999999999751100 0 01346678899999999999
Q ss_pred HhCCceEEEEcCCCccc-----H----HHHHHHHHHHHhc
Q 002787 573 VNYKVDGFRFDLMGHIM-----K----STMMKAKHALHSL 603 (881)
Q Consensus 573 ~eygIDGFRfDlm~h~~-----~----~~~~~~~~~l~~i 603 (881)
++||+||+-+|.-.-.. + .+++++++++++.
T Consensus 109 ~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~ 148 (358)
T cd02875 109 KSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKE 148 (358)
T ss_pred HHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhc
Confidence 99999999999764321 1 2455666666543
No 85
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=89.92 E-value=2.2 Score=52.50 Aligned_cols=33 Identities=15% Similarity=-0.128 Sum_probs=30.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCceEEEEcCC
Q 002787 553 TASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (881)
Q Consensus 553 ~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm 585 (881)
+++.+|++|+.|.+...-.++.|.|||.-||==
T Consensus 435 l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 435 LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 678899999999999999999999999999743
No 86
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=89.65 E-value=0.52 Score=52.16 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (881)
+.++||+.||++|++||+-|........+ ...+++ +.+ +...... .....-.+..||..++...+.++.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~----~~~y~~-----~~~-~~~~~~~-~~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAH----EDQYPE-----MAK-ALGVDPA-TEGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCC----cHHHHH-----HHH-hcCCCcc-cCCeEEecCCCHHHHHHHHHHHHH
Confidence 38999999999999999887553211100 000110 000 0000000 011124578899999877777777
Q ss_pred HHHhCCceEEEEcC
Q 002787 571 WAVNYKVDGFRFDL 584 (881)
Q Consensus 571 W~~eygIDGFRfDl 584 (881)
-+.++|||||=.|.
T Consensus 144 ~~~~~Gidg~W~D~ 157 (292)
T cd06595 144 PLEKQGVDFWWLDW 157 (292)
T ss_pred HHHhcCCcEEEecC
Confidence 77789999999995
No 87
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=89.07 E-value=0.93 Score=55.88 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=62.1
Q ss_pred cccCCCCCCccEEeCCeeEEEEEcCCCCeEEEEEeeCCCCC--CCceEEec-ccCCCEEEEEcCCCCCCcE-------EE
Q 002787 202 ELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGG--NPLEVVQL-KENDGVWSIKGPKSWEGCY-------YV 271 (881)
Q Consensus 202 ~ly~~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~--~~~~~~~M-~~~~GvWsv~v~~~~~G~~-------Y~ 271 (881)
++|.+++.+|+ .+++|+|.|+.|++..|+..... .....+.| +-..|.|...+.+...... |.
T Consensus 59 ~~~~~~~~~G~-------iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~ 131 (697)
T COG1523 59 RLYPYDGELGA-------IWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYG 131 (697)
T ss_pred cccccCCcccc-------EEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCcccccccccc
Confidence 66888999998 89999999999999999853311 23456777 6678999999987764443 34
Q ss_pred EEEEeecCCCcccceeeecCccccccccCCC
Q 002787 272 YEVSVYHPSALQIEKCYANDPYARGLSSDGR 302 (881)
Q Consensus 272 Y~V~~~~p~~g~~e~~~vtDPYA~~ls~ng~ 302 (881)
|.++... ......|||++++..+..
T Consensus 132 ~~~~~~~------~~~~~~~~~~Ksvv~~~~ 156 (697)
T COG1523 132 YQITNLS------PDRDSADPYPKSVVIDPL 156 (697)
T ss_pred ccccccC------ccccccccCCceEEeccc
Confidence 4443221 124577888888876653
No 88
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=88.89 E-value=2.4 Score=47.40 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHH
Q 002787 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (881)
.++++-|+.||++|++|++=+ .|. .. .. ....+.-++.+++++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSi-------GG~-~~-------------------~~---------~~~~~~~~~~fa~sl~ 103 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISI-------GGA-NG-------------------HV---------DLNHTAQEDNFVDSIV 103 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEE-------eCC-CC-------------------cc---------ccCCHHHHHHHHHHHH
Confidence 468999999999999999864 121 10 00 0223456788999999
Q ss_pred HHHHhCCceEEEEcCCCcccH----HHHHHHHHHHHhcc
Q 002787 570 CWAVNYKVDGFRFDLMGHIMK----STMMKAKHALHSLT 604 (881)
Q Consensus 570 ~W~~eygIDGFRfDlm~h~~~----~~~~~~~~~l~~i~ 604 (881)
.++++|++||+-||.-.-... .........|+++.
T Consensus 104 ~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr 142 (312)
T cd02871 104 AIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLK 142 (312)
T ss_pred HHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHH
Confidence 999999999999999754322 12334444555544
No 89
>PRK10658 putative alpha-glucosidase; Provisional
Probab=88.31 E-value=0.89 Score=56.03 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCcccc----CCCCCCCCCCChHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLII 565 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~ 565 (881)
+.++||+.||++|++|++=+.. +.... ...++. ..-+|+-+ +.+|.... ...+.-.|..||..++...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~-----s~~f~e~~~~gy~vk-~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQK-----SPLFKEGKEKGYLLK-RPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCC-----chHHHHHHHCCeEEE-CCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 3789999999999999986543 22211 111221 12356654 34554321 2233456899999999999
Q ss_pred HHHHHHHHhCCceEEEEcCCCccc
Q 002787 566 DDLLCWAVNYKVDGFRFDLMGHIM 589 (881)
Q Consensus 566 Dsl~~W~~eygIDGFRfDlm~h~~ 589 (881)
+-++.++ ++|||||-.|....+|
T Consensus 399 ~~~~~l~-d~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 399 DKLKGLL-DMGVDCFKTDFGERIP 421 (665)
T ss_pred HHHHHHH-hcCCcEEEecCCceee
Confidence 9998866 5799999999654333
No 90
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=88.19 E-value=2.3 Score=45.87 Aligned_cols=63 Identities=19% Similarity=0.400 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (881)
++..+++++|+.|++|++=| -++... .+. ....++..|+-+++++..
T Consensus 47 ~~~~~~~~~~~~~~kvl~si-gg~~~~----------------~~~----------------~~~~~~~~r~~fi~~lv~ 93 (253)
T cd06545 47 ELNSVVNAAHAHNVKILISL-AGGSPP----------------EFT----------------AALNDPAKRKALVDKIIN 93 (253)
T ss_pred HHHHHHHHHHhCCCEEEEEE-cCCCCC----------------cch----------------hhhcCHHHHHHHHHHHHH
Confidence 68899999999999999843 232110 000 023456788889999999
Q ss_pred HHHhCCceEEEEcCCC
Q 002787 571 WAVNYKVDGFRFDLMG 586 (881)
Q Consensus 571 W~~eygIDGFRfDlm~ 586 (881)
++++|++||.-+|.-.
T Consensus 94 ~~~~~~~DGIdiDwE~ 109 (253)
T cd06545 94 YVVSYNLDGIDVDLEG 109 (253)
T ss_pred HHHHhCCCceeEEeec
Confidence 9999999999999864
No 91
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=88.18 E-value=0.1 Score=46.88 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCcccccCCHHHHh
Q 002787 842 NFSDVLRIRYSSPLFRLRTANAIQ 865 (881)
Q Consensus 842 ~~k~Ll~lRkssp~lrlgt~~~I~ 865 (881)
+||+||+|||+||+|+.++...+.
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~ 24 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLE 24 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEE
T ss_pred CHHHHHHHHhhCccccCCCcccEE
Confidence 699999999999999999766554
No 92
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=86.99 E-value=1.2 Score=50.40 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=56.3
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCccccCCC----CCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHSTC----MNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~stc----~~d~a~e~~mv~k~i~D 566 (881)
.++||+.||++|++|++=+.. |...+. ....+++ ..-+||-+. .+|......| +.-+|..||..++...+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P-~v~~~~---~~~~~~e~~~~g~~v~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 140 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDP-GVKVDP---GYDVYEEGLENDYFVKD-PDGELYIGRVWPGLSAFPDFTNPKVREWWGS 140 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeC-ceeCCC---CChHHHHHHHCCeEEEC-CCCCEEEEEecCCCccccCCCChHHHHHHHH
Confidence 789999999999999976433 332110 0111111 113566543 3443211111 22358899999999998
Q ss_pred HHHHHHHhCCceEEEEcCCC
Q 002787 567 DLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDlm~ 586 (881)
.++..+ ++|||||=+|...
T Consensus 141 ~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 141 LYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHHHHh-hCCCceEeecCCC
Confidence 888866 6899999999764
No 93
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.59 E-value=3.4 Score=51.86 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccC-CCCCCCceecCCCCccccCCCCC----CCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLD-KVVPGYYLRRNSDGFIEHSTCMN----NTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lD-k~vP~YY~r~~~~G~~~~stc~~----d~a~e~~mv~k~i~D 566 (881)
-|+||+.+|++||++|.=+...=... .+ +++ .+.-||+.+. ++|......|.+ -.+..||.+++...+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d-~~-----~~~e~~~~Gy~~k~-~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~ 395 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQD-SP-----LFKEAIEKGYFVKD-PDGEIYQADFWPGNSAFPDFTNPDAREWWAS 395 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccC-Cc-----hHHHHHHCCeEEEC-CCCCEeeecccCCcccccCCCCHHHHHHHHH
Confidence 77999999999999998654422111 11 111 1123677654 346665555544 348999999999996
Q ss_pred HHHHHHHhCCceEEEEcCCCcc
Q 002787 567 DLLCWAVNYKVDGFRFDLMGHI 588 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDlm~h~ 588 (881)
....-+.++|||||=.|.-.-.
T Consensus 396 ~~~~~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 396 DKKKNLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHhHHHhcCccEEEccCCCCc
Confidence 5555566899999998875443
No 94
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=86.04 E-value=1.4 Score=49.73 Aligned_cols=89 Identities=17% Similarity=0.029 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCcc-c---cCCCCCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFI-E---HSTCMNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~-~---~stc~~d~a~e~~mv~k~i~D 566 (881)
.++||+.||++|++||+-+.. +...+. ....++. ..-+|+.+. .+|.. . +...+.-+|..||.+++...+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P-~v~~~~---~~~~y~e~~~~g~~vk~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 140 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDP-HIKRDD---GYYVYKEAKDKGYLVKN-SDGGDFEGWCWPGSSSWPDFLNPEVRDWWAS 140 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecC-ceecCC---CCHHHHHHHHCCeEEEC-CCCCEEEEEECCCCcCCccCCChhHHHHHHH
Confidence 899999999999999998753 222110 0111111 112566543 33321 1 112234568999999999999
Q ss_pred HHHHHHH--hCCceEEEEcCC
Q 002787 567 DLLCWAV--NYKVDGFRFDLM 585 (881)
Q Consensus 567 sl~~W~~--eygIDGFRfDlm 585 (881)
-++.... ..+||||=+|+-
T Consensus 141 ~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 141 LFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHHhhcccCCCceEEeccC
Confidence 9988776 468999999954
No 95
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=81.60 E-value=1.9 Score=47.00 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W 571 (881)
.++||+.||++|++|++-+... +++...+-++..
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P~----------------------------------------------v~~w~~~~~~~~ 101 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDPY----------------------------------------------IREWWAEVVKKL 101 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeChh----------------------------------------------HHHHHHHHHHHh
Confidence 8999999999999999965331 145555555555
Q ss_pred HHhCCceEEEEcCCC
Q 002787 572 AVNYKVDGFRFDLMG 586 (881)
Q Consensus 572 ~~eygIDGFRfDlm~ 586 (881)
..++|||||=+|...
T Consensus 102 ~~~~Gvdg~w~D~~E 116 (265)
T cd06589 102 LVSLGVDGFWTDMGE 116 (265)
T ss_pred hccCCCCEEeccCCC
Confidence 568999999999764
No 96
>PRK12568 glycogen branching enzyme; Provisional
Probab=79.40 E-value=5.6 Score=49.59 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=51.3
Q ss_pred CCccEEeCCe-eEEEEEcCCCCeEEEEEeeCCCCCCCceEEec--ccCCCEEEEEcCCCCCCcEEEEEEEeecCCCcccc
Q 002787 209 PLGALYAEET-VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL--KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIE 285 (881)
Q Consensus 209 ~LGa~~~~~~-v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M--~~~~GvWsv~v~~~~~G~~Y~Y~V~~~~p~~g~~e 285 (881)
-||.+..+++ +.+|+|-|.|.+|.|+. .. + . ...+| ....|+|...++.. ..|+++++- +. +
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~--~~-~-~--~~~~~~~~~~~g~f~~~~~~~---~~y~~~~~~--~~-~--- 93 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLID--GR-G-K--LLARMQASPIDGVFEGILPAD---GPYRLRIVW--PD-V--- 93 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEe--cC-C-c--cccccEecCCCCeEEEecCCC---CCEEEEEEe--CC-c---
Confidence 5999988778 69999999999999963 11 1 1 11256 35679999988743 248888763 11 1
Q ss_pred eeeecCcccccc
Q 002787 286 KCYANDPYARGL 297 (881)
Q Consensus 286 ~~~vtDPYA~~l 297 (881)
.....|||+...
T Consensus 94 ~~~~~dpy~~~~ 105 (730)
T PRK12568 94 VQEIEDPYAFAP 105 (730)
T ss_pred eEEeeccccccc
Confidence 246789999754
No 97
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=78.91 E-value=4.2 Score=52.06 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCC-CCCCCceecCCCCccccCCC----CCCCCCCChHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHSTC----MNNTASEHYMVERLIID 566 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~stc----~~d~a~e~~mv~k~i~D 566 (881)
.++||+.||++|++||.=+.. +...+. ...+++. ...+||-+ +.+|......+ +.-.|..||.++++..+
T Consensus 243 P~~mv~~Lh~~G~kvv~iidP-gI~~d~---gY~~y~eg~~~~~fvk-~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~ 317 (978)
T PLN02763 243 PKGLADDLHSIGFKAIWMLDP-GIKAEE---GYFVYDSGCENDVWIQ-TADGKPFVGEVWPGPCVFPDFTNKKTRSWWAN 317 (978)
T ss_pred HHHHHHHHHHCCCEEEEEEcC-CCccCC---CCHHHHhHhhcCeeEE-CCCCCeeEeeecCCCccccCCCCHHHHHHHHH
Confidence 899999999999999864322 222110 0111221 11234433 33443221112 22348899999999988
Q ss_pred HHHHHHHhCCceEEEEcC
Q 002787 567 DLLCWAVNYKVDGFRFDL 584 (881)
Q Consensus 567 sl~~W~~eygIDGFRfDl 584 (881)
.++.+++ .|||||=.|.
T Consensus 318 ~~k~l~d-~GVDG~W~Dm 334 (978)
T PLN02763 318 LVKDFVS-NGVDGIWNDM 334 (978)
T ss_pred HHHHHhc-CCCcEEEccC
Confidence 8888764 7999999997
No 98
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=75.60 E-value=15 Score=40.04 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (881)
++.+=|++|+..|++|++=+ |-|... . | ... ...+.-++-.++++..
T Consensus 60 ~~~~~i~~~~~~g~KVllSi--------GG~~~~--------~-f---------------s~~-a~~~~~r~~f~~s~~~ 106 (256)
T cd06546 60 TLWTELAILQSSGVKVMGML--------GGAAPG--------S-F---------------SRL-DDDDEDFERYYGQLRD 106 (256)
T ss_pred HHHHHHHHHHhCCCEEEEEE--------CCCCCC--------C-c---------------ccc-cCCHHHHHHHHHHHHH
Confidence 46666778899999999832 211100 0 1 111 1234455666888999
Q ss_pred HHHhCCceEEEEcCCCcccHHHHHHHHHHHHh
Q 002787 571 WAVNYKVDGFRFDLMGHIMKSTMMKAKHALHS 602 (881)
Q Consensus 571 W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~ 602 (881)
++++|++||+-||.-.-.....+..+.++||+
T Consensus 107 ~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~ 138 (256)
T cd06546 107 MIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRS 138 (256)
T ss_pred HHHHhCCCceEEeeecCCCHhHHHHHHHHHHH
Confidence 99999999999999865445555555555554
No 99
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=75.52 E-value=21 Score=44.59 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=21.8
Q ss_pred cccccccccchhhhhhHHHHHHCCCcEEEeCccccc
Q 002787 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQF 393 (881)
Q Consensus 358 G~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~ 393 (881)
|+|..+. +-++.+++.|.+.+.|+|+...
T Consensus 162 GDfgdl~-------~l~d~~a~~G~~~~qlnPlha~ 190 (695)
T PRK11052 162 GDFGDLK-------QMLEDVAKRGGDFIGLNPIHAL 190 (695)
T ss_pred ecHHHHH-------HHHHHHHHcCCCEEEECCCCcC
Confidence 7775533 3366778889999999999854
No 100
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=75.42 E-value=30 Score=41.55 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEeec-cccCCCCCCCCCCcc-----------CCCCCCCceecCCCCccccCCCCCCCCCCC
Q 002787 490 IEFRRMVQALNHIGLHVVLDVVY-NHLQGSGPFDDNSVL-----------DKVVPGYYLRRNSDGFIEHSTCMNNTASEH 557 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDVVy-NHt~~~g~~~~~s~l-----------Dk~vP~YY~r~~~~G~~~~stc~~d~a~e~ 557 (881)
++++++.+.||++||.+|.|+-+ =+-.+.-.|.....| -..-|.+| +++|+. -..-.-|
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~F---s~~GQ~------WG~P~y~ 268 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYF---SETGQL------WGNPVYN 268 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCC---CcccCc------CCCCCcC
Q ss_pred hHHHHH-----HHHHHHHHHHhCCceEEEEcCCCc------ccHHH------------HHHHHHHHHhccccccCCCCCc
Q 002787 558 YMVERL-----IIDDLLCWAVNYKVDGFRFDLMGH------IMKST------------MMKAKHALHSLTKEIHGVDGSS 614 (881)
Q Consensus 558 ~mv~k~-----i~Dsl~~W~~eygIDGFRfDlm~h------~~~~~------------~~~~~~~l~~i~pe~~~~~g~~ 614 (881)
+..-+- .++-+++=++. +|++|+|..-- +|... ..+....|.... .+
T Consensus 269 w~~l~~~gy~ww~~rlr~~~~~--~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p~~~l~~~l~~e~--------~~ 338 (497)
T PRK14508 269 WDALRKDGYRWWIERLRRSFKL--YDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGPGKDLFEAVKEEL--------GD 338 (497)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh--CCeEEecchhhhceeeeecCCCCCCCCCeeecCCHHHHHHHHHHHh--------CC
Q ss_pred eEEEeccCCCcccccccCCCccccccCCCCcceecchHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHH
Q 002787 615 IYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQML 694 (881)
Q Consensus 615 ~~l~GE~Wd~gev~~~~~~~~a~Q~n~~gtgig~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l 694 (881)
+.++|| ..|+--+.+|+.+..
T Consensus 339 ~~vigE------------------------DLG~vp~~V~~~l~~----------------------------------- 359 (497)
T PRK14508 339 LPIIAE------------------------DLGVITPDVEELRDR----------------------------------- 359 (497)
T ss_pred CCEEEe------------------------ECCCCCHHHHHHHHH-----------------------------------
Q ss_pred HHHHHHHHhhhcccchhhhccccCCcccccCcccccC-----CCCccccCCCCccEEeeeccccchh
Q 002787 695 AAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYD-----GTPVAYALCPTETISYVSAHDNETL 756 (881)
Q Consensus 695 ~~~~d~i~~glaGnL~d~~~~~~~g~~~~Gs~~~~y~-----g~p~~ya~~P~~~INYVs~HDn~tL 756 (881)
.-+.|-.+..+. ..+-.-..-|..+|-|++.|||.||
T Consensus 360 -------------------------~gi~g~~Vl~f~~~~~~~~~~~p~~~~~~~v~~~~THD~~Tl 401 (497)
T PRK14508 360 -------------------------FGFPGMKILQFAFDGDSDNPYLPHNYPRNSVVYTGTHDNDTT 401 (497)
T ss_pred -------------------------cCCCccEEEEecCCCCCCCCCCCcCCCCCeEEECCCCCCHHH
No 101
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=74.32 E-value=7.6 Score=44.19 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 002787 494 RMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAV 573 (881)
Q Consensus 494 ~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ 573 (881)
..|+++|++|++|+-=+.+.... + ...++.+ -..++..+..+++-|+..++
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~--~----~~~~~~l-----------------------L~~~~~~~~~~a~kLv~lak 100 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG--Q----VEWLEDF-----------------------LKKDEDGSFPVADKLVEVAK 100 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC--c----hHHHHHH-----------------------hccCcccchHHHHHHHHHHH
Confidence 67889999999999866544220 0 0011110 00002234556777788888
Q ss_pred hCCceEEEEcCCCcc-cHHHHHHHHHHHHhccc
Q 002787 574 NYKVDGFRFDLMGHI-MKSTMMKAKHALHSLTK 605 (881)
Q Consensus 574 eygIDGFRfDlm~h~-~~~~~~~~~~~l~~i~p 605 (881)
.||+||+=+|.=... +.+.+..+++.++.+..
T Consensus 101 ~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~~ 133 (339)
T cd06547 101 YYGFDGWLINIETELGDAEKAKRLIAFLRYLKA 133 (339)
T ss_pred HhCCCceEeeeeccCCcHHHHHHHHHHHHHHHH
Confidence 999999999987766 44444444444444443
No 102
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=74.14 E-value=55 Score=36.38 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
+++++++|+.+++.|+.|..-+.+--.. + |..+. -.+++.+.+
T Consensus 119 l~~~~~~v~~ak~~g~~v~~~i~~~~~~---~-------------~~~~~---------------------~~~~~~~~~ 161 (287)
T PRK05692 119 LERFEPVAEAAKQAGVRVRGYVSCVLGC---P-------------YEGEV---------------------PPEAVADVA 161 (287)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEecC---C-------------CCCCC---------------------CHHHHHHHH
Confidence 5579999999999999998777663211 1 00010 125677777
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i 603 (881)
+... +.|+|.+++ |.+|.+.+..+.+....+++.
T Consensus 162 ~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 162 ERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHHH-HcCCcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 7765 579998887 999999888777766666653
No 103
>PLN02635 disproportionating enzyme
Probab=73.96 E-value=28 Score=42.19 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHhhcCCEEEEEeec
Q 002787 492 FRRMVQALNHIGLHVVLDVVY 512 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVy 512 (881)
++++-+.||++||++|-|+-+
T Consensus 226 w~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 226 WQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHCCCEEEEEeec
Confidence 667788899999999999985
No 104
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=72.85 E-value=7.4 Score=51.33 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccCCCcc
Q 002787 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGE 626 (881)
Q Consensus 555 ~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~ge 626 (881)
.++|...++|.+-.+.-++- ++|||+|-+..-|...-+.+.++.|+++| ++|+++|-+...|
T Consensus 486 eDsP~LW~~M~~Y~~~~Aki--F~G~RiDNCHSTPlhVaeylLd~AR~vnP--------nLyV~AELFTGSe 547 (1464)
T TIGR01531 486 EDSPYLWQHMKEYTEMTARI--FDGVRIDNCHSTPIHVAEYLLDAARKYNP--------NLYVVAELFTGSE 547 (1464)
T ss_pred cCCHHHHHHHHHHHHHHHHh--hcceeeecccCCcHHHHHHHHHHHhhcCC--------CeEEEeeecCCcH
Confidence 46789999999999998886 89999999999999988888899999984 7999999887665
No 105
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=72.83 E-value=12 Score=42.63 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCC-CChHHHHHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTAS-EHYMVERLIIDDLL 569 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~-e~~mv~k~i~Dsl~ 569 (881)
=+++|++||++.||++.+ |-|... | ..|.|-... .+.... ..+... -...+.+++.+-++
T Consensus 139 iv~El~~A~rk~Glk~G~---Y~S~~d---w--------~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~ql~ 199 (346)
T PF01120_consen 139 IVGELADACRKYGLKFGL---YYSPWD---W--------HHPDYPPDE--EGDENG---PADGPGNWQRYYNEYWLAQLR 199 (346)
T ss_dssp HHHHHHHHHHHTT-EEEE---EEESSS---C--------CCTTTTSSC--HCHHCC-----HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEE---EecchH---h--------cCcccCCCc--cCCccc---ccccchhhHhHhhhhhHHHHH
Confidence 599999999999999998 433321 1 011111000 000000 000000 11235557888899
Q ss_pred HHHHhCCceEEEEcCCCcc--cHHHHHHHHHHHHhccc
Q 002787 570 CWAVNYKVDGFRFDLMGHI--MKSTMMKAKHALHSLTK 605 (881)
Q Consensus 570 ~W~~eygIDGFRfDlm~h~--~~~~~~~~~~~l~~i~p 605 (881)
-.++.|++|.+=||..... ......++.+.++++.|
T Consensus 200 EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp 237 (346)
T PF01120_consen 200 ELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKLQP 237 (346)
T ss_dssp HHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHHST
T ss_pred HHHhCCCcceEEecCCCCccccccCHHHHHHHHHHhCC
Confidence 9999999999999998653 23345788888898886
No 106
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=71.48 E-value=12 Score=41.58 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W 571 (881)
..+|++.+|++|++|++=| -|... +.++ +..++. -..++..|+-+++++..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i-~~~~~--~~~~---------~~~~~~----------------~l~~~~~r~~fi~~iv~~ 98 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVI-TNLTN--GNFD---------SELAHA----------------VLSNPEARQRLINNILAL 98 (313)
T ss_pred CHHHHHHHHHCCCeEEEEE-ecCCC--CCCC---------HHHHHH----------------HhcCHHHHHHHHHHHHHH
Confidence 4689999999999999754 33221 0000 001110 134567888899999999
Q ss_pred HHhCCceEEEEcCCC
Q 002787 572 AVNYKVDGFRFDLMG 586 (881)
Q Consensus 572 ~~eygIDGFRfDlm~ 586 (881)
+++||+||+-+|.-.
T Consensus 99 l~~~~~DGidiDwE~ 113 (313)
T cd02874 99 AKKYGYDGVNIDFEN 113 (313)
T ss_pred HHHhCCCcEEEeccc
Confidence 999999999999864
No 107
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.28 E-value=50 Score=37.18 Aligned_cols=111 Identities=8% Similarity=0.122 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (881)
-+|+|++|+-|.++||+||-.+ ++-|+.+-. +..|.+ ...+. ......+.++..++.+.++|.+.
T Consensus 81 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~---------~~~pel----~~~~~-~~~~~~~~l~~~~~~t~~f~~~l 146 (326)
T cd06564 81 KEEFKELIAYAKDRGVNIIPEIDSPGHSLAFT---------KAMPEL----GLKNP-FSKYDKDTLDISNPEAVKFVKAL 146 (326)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCcHHHHHHH---------HhhHHh----cCCCc-ccCCCcccccCCCHHHHHHHHHH
Confidence 4689999999999999999876 456764310 001110 00000 11123456688899999999998
Q ss_pred HHHHHHhCC--ceEEEEc-----C---CCcccHHHHHHHHHHHHhccccccCCCCCceEEEecc
Q 002787 568 LLCWAVNYK--VDGFRFD-----L---MGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEG 621 (881)
Q Consensus 568 l~~W~~eyg--IDGFRfD-----l---m~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~ 621 (881)
+.-.+.-|. -+=|.+= . ...+...++.++.+.|++.. +.+.+.+|.
T Consensus 147 ~~E~~~~f~~~~~~~HiGgDE~~~~~~~~~~~~~f~~~~~~~v~~~g--------k~~~~W~d~ 202 (326)
T cd06564 147 FDEYLDGFNPKSDTVHIGADEYAGDAGYAEAFRAYVNDLAKYVKDKG--------KTPRVWGDG 202 (326)
T ss_pred HHHHHHhcCCCCCEEEeccccccccCccHHHHHHHHHHHHHHHHHcC--------CeEEEeCCc
Confidence 888887665 3333321 1 11122345566666666543 456565554
No 108
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=70.97 E-value=14 Score=44.18 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCCh------HHH--
Q 002787 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHY------MVE-- 561 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~------mv~-- 561 (881)
++++++.+.|+++||.+|.|+-+ |. ...|.=-=..|.+|...-.-|..-...+-.--+..+| |-+
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpi------gv-~~dsaDvW~~~~lF~~~~~aGaPPD~fs~~GQ~WG~P~y~w~~l~~~g 264 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPI------GV-SPDSADVWANPELFLLDASAGAPPDYFSPTGQNWGNPPYNWDALKEDG 264 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEES------S---SSSHHHHH-GGGB-B-EEEEE-SSSSSSS-EEEEEE-B-HHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEEEeccc------eE-CCCcHHHHhCHHHHhCcCeeCCCCCCCCcccccCCCCCcCHHHHHHcC
Q ss_pred -HHHHHHHHHHHHhCCceEEEEcCCCcc------------------cHHHHHHHHHHHHhccccccCCCCC-ceEEEecc
Q 002787 562 -RLIIDDLLCWAVNYKVDGFRFDLMGHI------------------MKSTMMKAKHALHSLTKEIHGVDGS-SIYIYGEG 621 (881)
Q Consensus 562 -k~i~Dsl~~W~~eygIDGFRfDlm~h~------------------~~~~~~~~~~~l~~i~pe~~~~~g~-~~~l~GE~ 621 (881)
+..++-+++=++. +|+.|+|..--+ -+.-..+....|.... . ++.++||
T Consensus 265 y~ww~~rl~~~~~~--~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~--------~r~~~vigE- 333 (496)
T PF02446_consen 265 YRWWIDRLRANMRL--FDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALES--------GRDCLVIGE- 333 (496)
T ss_dssp THHHHHHHHHHHCC---SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHH--------S-S-EEEE--
T ss_pred CHHHHHHHHHHHHh--CCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHc--------CCCCcEEEe-
Q ss_pred CCCcccccccCCCccccccCCCCcceecchHHHHHhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHHHH
Q 002787 622 WDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHI 701 (881)
Q Consensus 622 Wd~gev~~~~~~~~a~Q~n~~gtgig~fnDr~Rdavrgg~~F~~~~~qGf~~g~~~~~n~~~~g~~~~~~~~l~~~~d~i 701 (881)
..|+--+.+|+.++.-+..
T Consensus 334 -----------------------DLG~vp~~v~~~l~~~gi~-------------------------------------- 352 (496)
T PF02446_consen 334 -----------------------DLGTVPPEVRELLAELGIP-------------------------------------- 352 (496)
T ss_dssp ------------------------TSS--HHHHHHHHHTT----------------------------------------
T ss_pred -----------------------ecCCCcHHHHHHHHHcCCC--------------------------------------
Q ss_pred Hhhhcccchhhhccc-cCCcccccCcccccCCCCccccCCCCccEEeeeccccchhh
Q 002787 702 QVGLAANLRDFQLTN-SEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLF 757 (881)
Q Consensus 702 ~~glaGnL~d~~~~~-~~g~~~~Gs~~~~y~g~p~~ya~~P~~~INYVs~HDn~tL~ 757 (881)
.++-+.|.. .++ .....|..| |..+|-|+++|||.||.
T Consensus 353 ------g~~Vl~f~~~~~~---------~~~~~P~~~---~~~sva~~~THD~~Tl~ 391 (496)
T PF02446_consen 353 ------GMRVLQFEFDEDD---------GNFYLPHNY---PENSVAYTGTHDNPTLR 391 (496)
T ss_dssp ------EEEEGGGSSSSST---------T-TTSGGGS---TSSEEEESS-TTS--HH
T ss_pred ------ceEEEEecCCCCC---------CCCCCcccC---CCccEeeCCCCCCHHHH
No 109
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=69.58 E-value=47 Score=37.67 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCc-----cccCCCCCCCCCCChHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF-----IEHSTCMNNTASEHYMVER 562 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~-----~~~stc~~d~a~e~~mv~k 562 (881)
.+|+|++|+-|.++||+||-.+ ++-|+.+-.. ..|.+ ...+. .....+++.++..++.+.+
T Consensus 74 ~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~---------~~p~l----~~~~~~~~~~~~~~~~~~~l~~~~~~t~~ 140 (329)
T cd06568 74 QEDYKDIVAYAAERHITVVPEIDMPGHTNAALA---------AYPEL----NCDGKAKPLYTGIEVGFSSLDVDKPTTYE 140 (329)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHH---------hChhh----ccCCCCCccccccCCCCcccCCCCHHHHH
Confidence 4689999999999999999877 3556643100 01110 01110 0011234667889999999
Q ss_pred HHHHHHHHHHHhC
Q 002787 563 LIIDDLLCWAVNY 575 (881)
Q Consensus 563 ~i~Dsl~~W~~ey 575 (881)
++.+.+.-.++-+
T Consensus 141 fl~~v~~E~~~~f 153 (329)
T cd06568 141 FVDDVFRELAALT 153 (329)
T ss_pred HHHHHHHHHHHhC
Confidence 9988888877654
No 110
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=67.76 E-value=35 Score=38.86 Aligned_cols=80 Identities=8% Similarity=-0.013 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (881)
-+|+|++|+-|.++||+||-.+ ++.|+.+-....+....+. +.++ . ......++..++..++.+.+++.+.
T Consensus 69 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~~~--~~~~--~----~~~~~~~~~~L~~~~~~t~~fl~~v 140 (348)
T cd06562 69 PEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLTGC--YAVW--R----KYCPEPPCGQLNPTNPKTYDFLKTL 140 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhCCC--Cccc--c----ccccCCCCccccCCChhHHHHHHHH
Confidence 3589999999999999999887 5677754211100000000 0000 0 0011123455788899999999998
Q ss_pred HHHHHHhCC
Q 002787 568 LLCWAVNYK 576 (881)
Q Consensus 568 l~~W~~eyg 576 (881)
+.-.++-|.
T Consensus 141 l~E~~~lF~ 149 (348)
T cd06562 141 FKEVSELFP 149 (348)
T ss_pred HHHHHHhcC
Confidence 888886543
No 111
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=66.95 E-value=15 Score=35.08 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=42.8
Q ss_pred EeCCeeEEEEEcC--CCCeEEEEEeeCCCC--CCCceEEec-----ccCCCEEEEEcCCCCCCcEEEEEEEe
Q 002787 214 YAEETVSLYLWAP--TAQSVSACIYRDPLG--GNPLEVVQL-----KENDGVWSIKGPKSWEGCYYVYEVSV 276 (881)
Q Consensus 214 ~~~~~v~F~vWAP--tA~~V~L~ly~~~~~--~~~~~~~~M-----~~~~GvWsv~v~~~~~G~~Y~Y~V~~ 276 (881)
+.++.+++||++. .+++|.|+..+.... .......+| ++.-..|+++++.......|.|+|..
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe
Confidence 4577899999986 567888764443221 123356778 23457999999977777889999985
No 112
>PRK14705 glycogen branching enzyme; Provisional
Probab=66.43 E-value=15 Score=48.46 Aligned_cols=76 Identities=24% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCccEEeCCee-EEEEEcCCCCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCCC--CCCcEEEEEEEeecCCCccc
Q 002787 209 PLGALYAEETV-SLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKS--WEGCYYVYEVSVYHPSALQI 284 (881)
Q Consensus 209 ~LGa~~~~~~v-~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~~--~~G~~Y~Y~V~~~~p~~g~~ 284 (881)
-||.|..++++ .+|+|-|.|++|.|+. ... ..+| ....|+|...++.. .....|+++++- . . +
T Consensus 522 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~--~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~-~-~-~-- 588 (1224)
T PRK14705 522 VLGAHLDDHGHVTVRTVKHLAKAVSVVT--AAG------RVPMTHEAHGVWAAVLEPLQAGHVPDYRLEVTY-D-G-A-- 588 (1224)
T ss_pred hcCCcCCCCceEEEEEECCCCeEEEEEe--CCC------ceeeeeCCCCEEEEeccccccCCCCCeEEEEEe-C-C-c--
Confidence 49999877774 6999999999999963 211 1245 45679999988742 122348888763 1 1 1
Q ss_pred ceeeecCcccccc
Q 002787 285 EKCYANDPYARGL 297 (881)
Q Consensus 285 e~~~vtDPYA~~l 297 (881)
+.....|||+...
T Consensus 589 ~~~~~~d~y~~~~ 601 (1224)
T PRK14705 589 EPVTIDDPYHYLP 601 (1224)
T ss_pred cceEeccccccCC
Confidence 1245789999643
No 113
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=66.38 E-value=1.6e+02 Score=35.66 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.3
Q ss_pred CCCCccEEeeeccccchhhh
Q 002787 739 LCPTETISYVSAHDNETLFD 758 (881)
Q Consensus 739 ~~P~~~INYVs~HDn~tL~D 758 (881)
..|..+|.|++.|||.||.-
T Consensus 392 ~~~~nsva~tsTHD~ptl~g 411 (520)
T COG1640 392 YYPPNSVATTSTHDLPTLRG 411 (520)
T ss_pred hcccceeEEeccCCChhHHH
Confidence 35668899999999998854
No 114
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=65.16 E-value=41 Score=39.05 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHH---HHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLI---IDD 567 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i---~Ds 567 (881)
=+++|++||++.||++-+ | |. .+|-..|.|-...+.. ......+...+++ ..-
T Consensus 129 iv~el~~A~rk~Glk~G~---Y-~S----------~~DW~~p~y~~~~~~~----------~~~~~~~~~~~y~~~~~~Q 184 (384)
T smart00812 129 LVGELADAVRKRGLKFGL---Y-HS----------LFDWFNPLYAGPTSSD----------EDPDNWPRFQEFVDDWLPQ 184 (384)
T ss_pred hHHHHHHHHHHcCCeEEE---E-cC----------HHHhCCCccccccccc----------cccccchhHHHHHHHHHHH
Confidence 599999999999999998 3 11 1222235442211100 0012234566777 778
Q ss_pred HHHHHHhCCceEEEEcCCCcccHH--HHHHHHHHHHhcccc
Q 002787 568 LLCWAVNYKVDGFRFDLMGHIMKS--TMMKAKHALHSLTKE 606 (881)
Q Consensus 568 l~~W~~eygIDGFRfDlm~h~~~~--~~~~~~~~l~~i~pe 606 (881)
++-.+..||-|.+=||...-.+.. .+.++.+.++++.|+
T Consensus 185 l~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~ 225 (384)
T smart00812 185 LRELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPV 225 (384)
T ss_pred HHHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCC
Confidence 888899999999999987543433 356788888888864
No 115
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=64.31 E-value=15 Score=41.62 Aligned_cols=67 Identities=10% Similarity=0.000 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W 571 (881)
.++||+.||+.|++||+-+.. |... | ...|+ . +.-.+..||.++++-.+-.+.+
T Consensus 66 p~~mv~~L~~~G~klv~~i~P-~i~~-g---------~~~~~-------~--------~~~pDftnp~ar~wW~~~~~~l 119 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITP-VISY-G---------GGLGS-------P--------GLYPDLGRPDVREWWGNQYKYL 119 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecC-ceec-C---------ccCCC-------C--------ceeeCCCCHHHHHHHHHHHHHH
Confidence 789999999999999987642 2210 0 00000 0 1123677899999887777776
Q ss_pred HHhCCceEEEEcCC
Q 002787 572 AVNYKVDGFRFDLM 585 (881)
Q Consensus 572 ~~eygIDGFRfDlm 585 (881)
. +.|||||=.|.-
T Consensus 120 ~-~~Gv~~~W~Dmn 132 (332)
T cd06601 120 F-DIGLEFVWQDMT 132 (332)
T ss_pred H-hCCCceeecCCC
Confidence 5 469999999954
No 116
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=62.88 E-value=69 Score=38.69 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCEEEEEeecc
Q 002787 492 FRRMVQALNHIGLHVVLDVVYN 513 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyN 513 (881)
++++-+.++.+||++|-|+-+-
T Consensus 214 ~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 214 FQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHhcCCcEEEEeCcce
Confidence 5666777889999999999773
No 117
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=62.02 E-value=33 Score=39.21 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHH
Q 002787 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (881)
..|.++|+.|+++||+|||-+. .++. | .-+.+ ..|.-- ..+.+|..............+|.+++++...++
T Consensus 47 ~~lD~~l~~a~~~Gi~viL~~~-~~~~---P---~Wl~~-~~Pe~~-~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~ 117 (374)
T PF02449_consen 47 SWLDRVLDLAAKHGIKVILGTP-TAAP---P---AWLYD-KYPEIL-PVDADGRRRGFGSRQHYCPNSPAYREYARRFIR 117 (374)
T ss_dssp HHHHHHHHHHHCTT-EEEEEEC-TTTS-------HHHHC-CSGCCC--B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCeEEEEec-cccc---c---cchhh-hccccc-ccCCCCCcCccCCccccchhHHHHHHHHHHHHH
Confidence 3599999999999999999776 2221 1 00011 112111 123345444444455567788999988888887
Q ss_pred HHHHhCC----ceEEEEcCC-C---cccHHHHHHHHHHHHhc
Q 002787 570 CWAVNYK----VDGFRFDLM-G---HIMKSTMMKAKHALHSL 603 (881)
Q Consensus 570 ~W~~eyg----IDGFRfDlm-~---h~~~~~~~~~~~~l~~i 603 (881)
..++.|+ |-|+-+|-= + ..........+..|++-
T Consensus 118 ~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~k 159 (374)
T PF02449_consen 118 ALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEK 159 (374)
T ss_dssp HHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHH
T ss_pred HHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHH
Confidence 7777765 779988864 2 22333344455555443
No 118
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=61.05 E-value=44 Score=37.83 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=57.8
Q ss_pred CcCCCcCCCCCCCCCCCchHHHH-HHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCcee----cCCC---
Q 002787 470 VLWGVPKGSYASNPNGSCRTIEF-RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLR----RNSD--- 541 (881)
Q Consensus 470 ~~y~ape~sYgt~~dg~~ri~Ef-r~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r----~~~~--- 541 (881)
++..++|+..+...++. | .+=|++||+.|.+||-=+ | . |...... .||.. ..+.
T Consensus 65 ~d~vVID~~~~g~~~~~-----fs~~~i~~Lk~~g~~viaYl--S-v---Ge~E~~R-------~y~~~~~~~~~~~~l~ 126 (315)
T TIGR01370 65 FELVVIDYSKDGTEDGT-----YSPEEIVRAAAAGRWPIAYL--S-I---GAAEDYR-------FYWQKGWKVNAPAWLG 126 (315)
T ss_pred CCEEEEccccccCcccC-----CCHHHHHHHHhCCcEEEEEE--E-c---hhccccc-------hhhhhhhhcCCHHHhC
Confidence 56678888875333321 2 455778889998887422 2 2 2222111 13211 0110
Q ss_pred CccccCCCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcc
Q 002787 542 GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI 588 (881)
Q Consensus 542 G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~ 588 (881)
+...++...--++..++..+++|.+-+...+ +-|+|||=+|.+...
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 1222232333457778899999998877655 459999999988654
No 119
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=59.48 E-value=1.4e+02 Score=33.99 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=84.1
Q ss_pred ceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcccccCCCCcccccccccCCCCCccc
Q 002787 335 ISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVF 414 (881)
Q Consensus 335 ~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~~ti~e~~~~~~~~~~~~~~~~ 414 (881)
--||=++|.+=...... -....|-|.==. ...+++++.+.++||.+|-|-|+.+-..-++
T Consensus 28 dLI~PlFV~eg~~~~~~-I~smPg~~r~si---d~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~---------------- 87 (324)
T PF00490_consen 28 DLIYPLFVVEGENEKEP-ISSMPGVYRYSI---DSLVKEVEEAVDLGIRAVILFGVIDPSKKDE---------------- 87 (324)
T ss_dssp GEEEEEEEESSSSSEEE-ETTSTTEEEEEH---HHHHHHHHHHHHTT--EEEEEEE-SCSC-BS----------------
T ss_pred HeEEEEEEecCCCccee-ccCCCCeeeeCH---HHHHHHHHHHHHCCCCEEEEEeeCCcccCCc----------------
Confidence 35888888764331111 123346553211 2467889999999999999999965432111
Q ss_pred cccCCCcccceeeecCcccchhhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCcCCCcCCCCCCCCCCCchHHHHHH
Q 002787 415 FGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRR 494 (881)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~dg~~ri~Efr~ 494 (881)
.|+.+-+++|. ..+
T Consensus 88 -------------------------------------------------------------~gs~a~~~~g~-----v~~ 101 (324)
T PF00490_consen 88 -------------------------------------------------------------EGSEAYNPDGL-----VQR 101 (324)
T ss_dssp -------------------------------------------------------------S-GGGGSTTSH-----HHH
T ss_pred -------------------------------------------------------------chhcccCCCCh-----HHH
Confidence 22333344443 444
Q ss_pred HHHHHhh--cCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHH
Q 002787 495 MVQALNH--IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWA 572 (881)
Q Consensus 495 mV~alH~--~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~ 572 (881)
.|+++++ -.|-||-||-+-.-...|-.+ +++ +.+|.+. |...-+.+.+..+..+
T Consensus 102 air~iK~~~pdl~vi~Dvclc~YT~hGHcG---il~----------~~~g~id-----------ND~Tl~~Lak~Al~~A 157 (324)
T PF00490_consen 102 AIRAIKKAFPDLLVITDVCLCEYTSHGHCG---ILD----------DEDGEID-----------NDETLERLAKQALSHA 157 (324)
T ss_dssp HHHHHHHHSTTSEEEEEE-STTTBTSSSSS---EB-----------CTTSSBE-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEecccccccCCCceE---EEE----------CCCCeEe-----------cHHHHHHHHHHHHHHH
Confidence 4444443 379999999997765444321 111 1234332 3345566666666667
Q ss_pred HhCCceEEEEcCCCcccHHHHHHHHHHHHhcc
Q 002787 573 VNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 573 ~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~ 604 (881)
+- |.|-.- -+.|+...+..+|++|++-.
T Consensus 158 ~A-GADiVA---PSdMMDGrV~aIR~aLd~~g 185 (324)
T PF00490_consen 158 EA-GADIVA---PSDMMDGRVGAIREALDEAG 185 (324)
T ss_dssp HH-T-SEEE---E-S--TTHHHHHHHHHHHTT
T ss_pred Hh-CCCeec---cccccCCHHHHHHHHHHhCC
Confidence 65 887653 34555566778888887753
No 120
>PLN03244 alpha-amylase; Provisional
Probab=55.45 E-value=14 Score=46.30 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCccEEeC-CeeEEEEEcCCCCeEEEE-EeeCCCCCC-CceEEec-ccCCCEEEEEcCC
Q 002787 209 PLGALYAE-ETVSLYLWAPTAQSVSAC-IYRDPLGGN-PLEVVQL-KENDGVWSIKGPK 263 (881)
Q Consensus 209 ~LGa~~~~-~~v~F~vWAPtA~~V~L~-ly~~~~~~~-~~~~~~M-~~~~GvWsv~v~~ 263 (881)
.||.+-.. .++.|+-|||.|.-++|+ .||.|.-.+ ..++--| +.+-|+|.+.++.
T Consensus 122 ~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~ 180 (872)
T PLN03244 122 ILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILED 180 (872)
T ss_pred hhccccCcccCceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEech
Confidence 58988886 489999999999999998 787775321 1122235 6788999999974
No 121
>PLN02950 4-alpha-glucanotransferase
Probab=55.10 E-value=2e+02 Score=37.34 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=35.9
Q ss_pred eeEEEEEcCC---CCeEEEEEee--CCCCCCCceEEec-ccCCCEEEEEcCCCCC--CcEEEEEEE
Q 002787 218 TVSLYLWAPT---AQSVSACIYR--DPLGGNPLEVVQL-KENDGVWSIKGPKSWE--GCYYVYEVS 275 (881)
Q Consensus 218 ~v~F~vWAPt---A~~V~L~ly~--~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~--G~~Y~Y~V~ 275 (881)
.|+|+|-+|+ -++|.|+ -+ .-..+.+...+.| ......|++.+.-... ...|+|-+.
T Consensus 154 ~V~F~v~~~~~~~Gq~v~Vv-Gs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVT-GSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred eEEEEEecCccCCCCeEEEE-echhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEE
Confidence 5899999995 3566654 11 1112344556778 4567899999864322 346888775
No 122
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.91 E-value=84 Score=35.41 Aligned_cols=77 Identities=14% Similarity=0.035 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCC--CCCCCCCChHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTC--MNNTASEHYMVERLII 565 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc--~~d~a~e~~mv~k~i~ 565 (881)
.+|+|++|+-|.++||+||-.+ ++.|+.+-. . ..|++-... .........+ .+-++..++.+.+++.
T Consensus 67 ~~di~elv~yA~~rgI~vIPEId~PGH~~a~~--------~-~ypel~~~~-~~~~~~~~~~~~~~~l~~~~p~t~~f~~ 136 (311)
T cd06570 67 QEQIREVVAYARDRGIRVVPEIDVPGHASAIA--------V-AYPELASGP-GPYVIERGWGVFEPLLDPTNEETYTFLD 136 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEeecCccchHHHH--------H-hCHHhccCC-CccccccccccCCCccCCCChhHHHHHH
Confidence 3589999999999999999887 467774310 0 011110000 0000111111 1236788888888888
Q ss_pred HHHHHHHHhC
Q 002787 566 DDLLCWAVNY 575 (881)
Q Consensus 566 Dsl~~W~~ey 575 (881)
+.+.-.+.-|
T Consensus 137 ~l~~E~~~lF 146 (311)
T cd06570 137 NLFGEMAELF 146 (311)
T ss_pred HHHHHHHHhC
Confidence 8887777543
No 123
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=54.47 E-value=30 Score=43.80 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhccccccCCCCCceEEEeccCCCccc
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEV 627 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe~~~~~g~~~~l~GE~Wd~gev 627 (881)
..|...+.|..-...=++- +||+|+|-+..-|.-.-+...++.++++| ++|+++|-+...|.
T Consensus 509 DsPyLWq~M~kY~e~tAri--FdG~RlDNcHsTPlHVaEylLd~ARk~nP--------nlYVvAELFtgSe~ 570 (1521)
T KOG3625|consen 509 DSPYLWQHMKKYTEITARI--FDGVRLDNCHSTPLHVAEYLLDAARKLNP--------NLYVVAELFTGSED 570 (1521)
T ss_pred cChHHHHHHHHHHHHHHHH--hcceeeccCCCCchhHHHHHHHHHHhcCC--------CeEEEeeeccCCcc
Confidence 3466777777766666655 89999999988888877778888889984 69999999876664
No 124
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=53.72 E-value=44 Score=34.24 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccc
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNH 514 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNH 514 (881)
-+..+.+++.+.||+|++-+.+++
T Consensus 66 ~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 66 LLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCc
Confidence 488889999999999999887763
No 125
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=51.78 E-value=10 Score=42.70 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=15.0
Q ss_pred HHHHHHhhcCCEEEEEeecc
Q 002787 494 RMVQALNHIGLHVVLDVVYN 513 (881)
Q Consensus 494 ~mV~alH~~GirVIlDVVyN 513 (881)
..|+++|++|.+|+==+.+.
T Consensus 46 ~widaAHrnGV~vLGTiife 65 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFE 65 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEec
Confidence 68999999999998766663
No 126
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=51.75 E-value=35 Score=42.88 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=49.9
Q ss_pred HHHHHHHHhhcCCEEEEEee-ccccCCC-CCCCCCCccCCCCCCCceecCCCCcc---ccCC-C-CCCCCCCChHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVV-YNHLQGS-GPFDDNSVLDKVVPGYYLRRNSDGFI---EHST-C-MNNTASEHYMVERLI 564 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVV-yNHt~~~-g~~~~~s~lDk~vP~YY~r~~~~G~~---~~st-c-~~d~a~e~~mv~k~i 564 (881)
|+++|+.||++|+++|+=+- +.+++.. ++++.. ..+-+-- .+..|.. -+.+ . ..=.+..||.+....
T Consensus 353 ~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g--~~~~v~I----~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww 426 (805)
T KOG1065|consen 353 LKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRG--VAKDVLI----KNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW 426 (805)
T ss_pred hHHHHHHHHhCCCeEEEEeCCccccCccchhhhhh--hhhceee----ecccCchhhhcccCCCcccccccCCchHHHHH
Confidence 99999999999999876333 2234332 333211 1111000 1111211 1101 0 111256677787888
Q ss_pred HHHHHHHHHhCCceEEEEcC
Q 002787 565 IDDLLCWAVNYKVDGFRFDL 584 (881)
Q Consensus 565 ~Dsl~~W~~eygIDGFRfDl 584 (881)
.+.++..=+++.+|||=+|+
T Consensus 427 ~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 427 LDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred HHHHHhhcccCCccceEEEC
Confidence 88888777889999999997
No 127
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=49.55 E-value=65 Score=35.81 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcCCEEEE
Q 002787 491 EFRRMVQALNHIGLHVVL 508 (881)
Q Consensus 491 Efr~mV~alH~~GirVIl 508 (881)
+|.+-|+.|+++|++|+|
T Consensus 60 ~~~~dI~~cq~~G~KVlL 77 (280)
T cd02877 60 QLGADIKHCQSKGKKVLL 77 (280)
T ss_pred hHHHHHHHHHHCCCEEEE
Confidence 699999999999999999
No 128
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=48.15 E-value=16 Score=41.20 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhcCCEEEEEe
Q 002787 490 IEFRRMVQALNHIGLHVVLDV 510 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDV 510 (881)
.+++.+++.|+++||.|||-.
T Consensus 63 ~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 63 RDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp G-HHHHHHHHHHTT-EEEEEE
T ss_pred hhHHHHHHHHHHcCcEEEecc
Confidence 469999999999999999863
No 129
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=47.64 E-value=34 Score=37.84 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccH----------HHHHHHHHHHHhc
Q 002787 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK----------STMMKAKHALHSL 603 (881)
Q Consensus 557 ~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~----------~~~~~~~~~l~~i 603 (881)
++.-++-+++++..|+++|++||+-||.-..... .++.+++++|++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 152 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRA 152 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccc
Confidence 3457888999999999999999999998866442 2455566666554
No 130
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.98 E-value=1.3e+02 Score=34.46 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCccc--cCCCCCCCCCCChHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIE--HSTCMNNTASEHYMVERLII 565 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~--~stc~~d~a~e~~mv~k~i~ 565 (881)
.+|+|++|+-|.++||+||-.+ ++.|+.+- +. ..|.+-.. .....+. ....++-++..++.+.+++.
T Consensus 85 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~--------l~-~~pel~~~-~~~~~~~~~~~~~~~~L~~~~~~t~~f~~ 154 (357)
T cd06563 85 QEEIREIVAYAAERGITVIPEIDMPGHALAA--------LA-AYPELGCT-GGPGSVVSVQGVVSNVLCPGKPETYTFLE 154 (357)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCchhHHHH--------HH-hCccccCC-CCCCccccccCcCCCccCCCChhHHHHHH
Confidence 5699999999999999999876 45676431 10 01111100 0000000 01123456788888989888
Q ss_pred HHHHHHHHhC
Q 002787 566 DDLLCWAVNY 575 (881)
Q Consensus 566 Dsl~~W~~ey 575 (881)
+.+.-.++-|
T Consensus 155 ~ll~E~~~lF 164 (357)
T cd06563 155 DVLDEVAELF 164 (357)
T ss_pred HHHHHHHHhC
Confidence 8888877644
No 131
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=46.02 E-value=33 Score=35.19 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcCCCccc
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM 589 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~ 589 (881)
.++..++-+++++..++++|++||+-+|......
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~ 117 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGA 117 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCC
Confidence 3455677788999999999999999999886544
No 132
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=45.62 E-value=49 Score=37.72 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCC
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~ 517 (881)
++...+|.+.+++.||+|+||+=|.++-+
T Consensus 57 ~~~~~~~akrak~~Gm~vlldfHYSD~Wa 85 (332)
T PF07745_consen 57 LEDVIALAKRAKAAGMKVLLDFHYSDFWA 85 (332)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSSS--
T ss_pred HHHHHHHHHHHHHCCCeEEEeecccCCCC
Confidence 66899999999999999999999987754
No 133
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=45.00 E-value=98 Score=41.32 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=19.7
Q ss_pred hhHHHHHHCCCcEEEeCcccccCC
Q 002787 372 SHLKKLSNAGLTHVHLLPTFQFAG 395 (881)
Q Consensus 372 ~hL~~L~~lGvT~I~LlPvfd~~t 395 (881)
+-++.|++.|.+.|+|+|+.....
T Consensus 750 ~~vd~~a~~G~~~~qilPl~~~~~ 773 (1221)
T PRK14510 750 ALVDFLAEGGQSLWGVNPLHPLGL 773 (1221)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCC
Confidence 347778889999999999987643
No 134
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=43.02 E-value=31 Score=38.47 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcC
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDL 584 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDl 584 (881)
.++..|+-+++++..++++||+||.-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 45678899999999999999999999993
No 135
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=42.18 E-value=32 Score=38.87 Aligned_cols=24 Identities=21% Similarity=0.287 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcCCEEEEEeecccc
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHL 515 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt 515 (881)
=.+..+++.+.||-||+||--.+.
T Consensus 81 Hd~CM~~~~~aGIYvi~Dl~~p~~ 104 (314)
T PF03198_consen 81 HDECMSAFADAGIYVILDLNTPNG 104 (314)
T ss_dssp -HHHHHHHHHTT-EEEEES-BTTB
T ss_pred HHHHHHHHHhCCCEEEEecCCCCc
Confidence 346677888999999999976644
No 136
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=42.02 E-value=1.4e+02 Score=32.85 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
+++.+++|+.++++|++|.+-+..-.. . -.+++.+.+
T Consensus 108 ~~~~~~~i~~ak~~G~~v~~~~~~a~~----------------------~---------------------~~~~~~~~~ 144 (266)
T cd07944 108 FDEALPLIKAIKEKGYEVFFNLMAISG----------------------Y---------------------SDEELLELL 144 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecC----------------------C---------------------CHHHHHHHH
Confidence 788999999999999988765544211 0 013566666
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhcc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~ 604 (881)
+. +.++|+|.+++ |.+|.+.+..+.+....+++..
T Consensus 145 ~~-~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 145 EL-VNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred HH-HHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 66 45689999997 9999999888887777776543
No 137
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=41.55 E-value=45 Score=37.02 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCceEEEEcCCC
Q 002787 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 555 ~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~ 586 (881)
..++..|+-+++++..++++|++||.-+|.-.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~ 114 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE 114 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 35667888899999999999999999999864
No 138
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=41.55 E-value=56 Score=36.32 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=19.5
Q ss_pred CcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccc
Q 002787 470 VLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNH 514 (881)
Q Consensus 470 ~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNH 514 (881)
.+|..|++.| -+.+.++|+.|+++||.+. +|+=|
T Consensus 77 ~d~~~~N~~Y---------F~~~d~~i~~a~~~Gi~~~--lv~~w 110 (289)
T PF13204_consen 77 FDFTRPNPAY---------FDHLDRRIEKANELGIEAA--LVPFW 110 (289)
T ss_dssp ---TT----H---------HHHHHHHHHHHHHTT-EEE--EESS-
T ss_pred cCCCCCCHHH---------HHHHHHHHHHHHHCCCeEE--EEEEE
Confidence 4666666666 3469999999999999996 45443
No 139
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=41.41 E-value=2e+02 Score=32.25 Aligned_cols=125 Identities=13% Similarity=0.017 Sum_probs=73.0
Q ss_pred cCcCCCcCCCCCCCCCCCchHHHHHHHHHHHhhcCCEEEEEeeccccCCCCC-CCCCCccCCCCCCCceecCCCCccccC
Q 002787 469 PVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP-FDDNSVLDKVVPGYYLRRNSDGFIEHS 547 (881)
Q Consensus 469 p~~y~ape~sYgt~~dg~~ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~-~~~~s~lDk~vP~YY~r~~~~G~~~~s 547 (881)
++.--++|+||-....++-.++|+|.| .+.|..||-=+-+--..+-.. |+ ....+-.|.|--..++ ++
T Consensus 43 ~f~llVVDps~~g~~~~~~~~eelr~~----~~gg~~pIAYlsIg~ae~yR~Ywd--~~w~~~~p~wLg~edP-----~W 111 (300)
T COG2342 43 PFDLLVVDPSYCGPFNTPWTIEELRTK----ADGGVKPIAYLSIGEAESYRFYWD--KYWLTGRPDWLGEEDP-----EW 111 (300)
T ss_pred CCcEEEEeccccCCCCCcCcHHHHHHH----hcCCeeEEEEEechhhhhhhhHhh--hhhhcCCcccccCCCC-----CC
Confidence 444557888876655555668888755 456766665443322211000 01 0111223444332222 24
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcc-----------------cHHHHHHHHHHHHhccc
Q 002787 548 TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-----------------MKSTMMKAKHALHSLTK 605 (881)
Q Consensus 548 tc~~d~a~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~-----------------~~~~~~~~~~~l~~i~p 605 (881)
.++-...+-++.-++.|.+-+...++ -|+||.=+|.+.-. +..++.++.+.+++.+|
T Consensus 112 ~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~ 185 (300)
T COG2342 112 PGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANP 185 (300)
T ss_pred CCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 45556678889999999988888664 59999999988655 22244556666666664
No 140
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=41.31 E-value=51 Score=38.76 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=43.5
Q ss_pred CCChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhcccc
Q 002787 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKE 606 (881)
Q Consensus 555 ~e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~pe 606 (881)
..+|...+.|.+-.+.-++- ++|||+|-+..-|...-+...++.|+++|+
T Consensus 373 eDsP~LW~~M~~Yt~~~A~i--F~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 373 EDSPFLWKHMKEYTELMAKI--FHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHh--cCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 56889999999999998876 899999999999998888888888888763
No 141
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=41.07 E-value=94 Score=34.80 Aligned_cols=79 Identities=18% Similarity=0.293 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (881)
.+..-|++|+++|++||+= + .|. ... ++- .+| .-++-+++++..
T Consensus 55 ~~~~~i~~lk~~G~kViiS--~-----GG~-~g~---------~~~----------~~~---------~~~~~~~~a~~~ 98 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVS--F-----GGA-SGT---------PLA----------TSC---------TSADQLAAAYQK 98 (294)
T ss_pred hHHHHHHHHHHcCCeEEEE--e-----cCC-CCC---------ccc----------cCc---------ccHHHHHHHHHH
Confidence 4888899999999999981 1 121 100 110 011 234566777777
Q ss_pred HHHhCCceEEEEcCCCcccHH--HHHHHHHHHHhccc
Q 002787 571 WAVNYKVDGFRFDLMGHIMKS--TMMKAKHALHSLTK 605 (881)
Q Consensus 571 W~~eygIDGFRfDlm~h~~~~--~~~~~~~~l~~i~p 605 (881)
.++.|++||.-||.-+-...+ .+....++|+++..
T Consensus 99 ~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~ 135 (294)
T cd06543 99 VIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQK 135 (294)
T ss_pred HHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHH
Confidence 889999999999998765443 24455555555543
No 142
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=39.89 E-value=53 Score=36.50 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccH-------HHHHHHHHHHHh
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-------STMMKAKHALHS 602 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~-------~~~~~~~~~l~~ 602 (881)
.++..|+-++++++.|+++|++||.-+|-..-... .+++++++++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999997743221 235566666653
No 143
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=39.61 E-value=5.9e+02 Score=29.02 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=32.4
Q ss_pred eEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCcc
Q 002787 336 SIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPT 390 (881)
Q Consensus 336 vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPv 390 (881)
-||=++|.+=...... -+...|-|.==. ...+++++.+.++||.+|-|-|+
T Consensus 23 LI~PlFV~eg~~~~~~-I~sMPG~~r~s~---d~l~~~~~~~~~~Gi~~v~LFgv 73 (314)
T cd00384 23 LIYPLFVVEGIDEKEE-ISSMPGVYRLSV---DSLVEEAEELADLGIRAVILFGI 73 (314)
T ss_pred ceeeEEEecCCCCccc-cCCCCCceeeCH---HHHHHHHHHHHHCCCCEEEEECC
Confidence 4788887653221111 123345553111 24578899999999999999998
No 144
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.94 E-value=91 Score=36.95 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCC
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQG 517 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~ 517 (881)
-+|+|++|+-|+++||+||-.+ ++-|+.+
T Consensus 96 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 96 RADYIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 4699999999999999999877 4677753
No 145
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=37.60 E-value=48 Score=37.15 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCcee-cCCCCccccCCC----CCCCCCCChHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLR-RNSDGFIEHSTC----MNNTASEHYMVER 562 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r-~~~~G~~~~stc----~~d~a~e~~mv~k 562 (881)
.+|+|++|+-|+++||+||-.| ++-|+.+- + +..|.+... ...+.......| +..++..++.+.+
T Consensus 72 ~~di~~lv~yA~~~gI~VIPeid~PGH~~~~--------l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~ 142 (351)
T PF00728_consen 72 KEDIRELVAYAKERGIEVIPEIDTPGHAEAW--------L-KAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYE 142 (351)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEESSS-HHH--------H-HHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCceeeeccCchHHHHH--------H-HhCchhhccccccccccccccccCCCcccCCCCcHHHHH
Confidence 4689999999999999999887 56776431 0 001111110 000111111222 2346788899999
Q ss_pred HHHHHHHHHHHhCCceEEE
Q 002787 563 LIIDDLLCWAVNYKVDGFR 581 (881)
Q Consensus 563 ~i~Dsl~~W~~eygIDGFR 581 (881)
++.+.+...+.-+.-.=|.
T Consensus 143 ~~~~l~~e~~~~f~~~~iH 161 (351)
T PF00728_consen 143 FLKDLLDEVADLFPSKYIH 161 (351)
T ss_dssp HHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHHhhCCCCeEE
Confidence 9999888888766644443
No 146
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=37.49 E-value=67 Score=35.95 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcCC
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm 585 (881)
.++..|+-+++++..|+++|++||+-+|--
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 356678889999999999999999999976
No 147
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=36.09 E-value=34 Score=39.32 Aligned_cols=25 Identities=12% Similarity=0.385 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeecc
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYN 513 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyN 513 (881)
+++|++|++.||+.||+||+||-..
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHH
Confidence 6789999999999999999998553
No 148
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=35.75 E-value=77 Score=35.32 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcCCCc
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGH 587 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h 587 (881)
.++..|+-+++++..|+++|++||+-+|.-..
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~ 118 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYP 118 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCC
Confidence 34567888999999999999999999997654
No 149
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.81 E-value=87 Score=34.82 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHH
Q 002787 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (881)
+++++|+=++++|+.|+|=+ ||-.. |.. .+ +++.+ +...-
T Consensus 74 dl~elv~Ya~~KgVgi~lw~--~~~~~------------------------~~~--------~~-----~~~~~-~~~f~ 113 (273)
T PF10566_consen 74 DLPELVDYAKEKGVGIWLWY--HSETG------------------------GNV--------AN-----LEKQL-DEAFK 113 (273)
T ss_dssp -HHHHHHHHHHTT-EEEEEE--ECCHT------------------------TBH--------HH-----HHCCH-HHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEE--eCCcc------------------------hhh--------Hh-----HHHHH-HHHHH
Confidence 59999999999999999732 32210 000 01 22334 44555
Q ss_pred HHHhCCceEEEEcCCCcccHHHHHHHHHHHHhcc
Q 002787 571 WAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 571 W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~ 604 (881)
|.++.||.|+-+|-|.......++-..+.+++..
T Consensus 114 ~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA 147 (273)
T PF10566_consen 114 LYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAA 147 (273)
T ss_dssp HHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHH
Confidence 6678999999999999988877766666666554
No 150
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=34.38 E-value=60 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEe
Q 002787 490 IEFRRMVQALNHIGLHVVLDV 510 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDV 510 (881)
++..++|+.+|++|++|+-.|
T Consensus 100 ~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 100 EERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHHHhCCCeEeccc
Confidence 368899999999999999654
No 151
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.23 E-value=67 Score=35.86 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (881)
.+|+|++|+-|.++||+||-.+ ++-|+.. .+. .|.|-+ ..+. ...+..++..++...++|.+.
T Consensus 59 ~~ei~ei~~yA~~~gI~vIPeid~pGH~~~--------~l~--~~~~~~-l~~~-----~~~~~~l~~~~~~t~~fi~~l 122 (301)
T cd06565 59 KEEIREIDDYAAELGIEVIPLIQTLGHLEF--------ILK--HPEFRH-LREV-----DDPPQTLCPGEPKTYDFIEEM 122 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCHHHHHH--------HHh--Cccccc-cccc-----CCCCCccCCCChhHHHHHHHH
Confidence 4689999999999999999764 3566632 111 122211 1111 112455688889999999998
Q ss_pred HHHHHHhCC
Q 002787 568 LLCWAVNYK 576 (881)
Q Consensus 568 l~~W~~eyg 576 (881)
+...+.-+.
T Consensus 123 i~ev~~~f~ 131 (301)
T cd06565 123 IRQVLELHP 131 (301)
T ss_pred HHHHHHhCC
Confidence 888886544
No 152
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=33.45 E-value=48 Score=32.64 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHhhcCCEEEEEe
Q 002787 487 CRTIEFRRMVQALNHIGLHVVLDV 510 (881)
Q Consensus 487 ~ri~Efr~mV~alH~~GirVIlDV 510 (881)
.++.|++.+-+.+.++||+|++|=
T Consensus 19 ~s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 19 MSVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred eeHHHHHHHHHHHHhCCcEEEECC
Confidence 458999999999999999999983
No 153
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=32.27 E-value=1e+02 Score=34.32 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (881)
-+|+|++|+-|.++||+||-.+ ++.|+.+-.. ..|..... ...+. ........++..++.+.+++.+.
T Consensus 71 ~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~---------~~p~l~~~-~~~~~-~~~~~~~~l~~~~~~t~~fl~~l 139 (303)
T cd02742 71 YAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVK---------SFPKLLTE-CYAGL-KLRDVFDPLDPTLPKGYDFLDDL 139 (303)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchHHHHHHHH---------hCHHhccC-ccccC-CCCCCCCccCCCCccHHHHHHHH
Confidence 3589999999999999999887 5677753110 00110000 00000 00112345678888899999998
Q ss_pred HHHHHHhC
Q 002787 568 LLCWAVNY 575 (881)
Q Consensus 568 l~~W~~ey 575 (881)
+.-++.-|
T Consensus 140 ~~e~~~lf 147 (303)
T cd02742 140 FGEIAELF 147 (303)
T ss_pred HHHHHHhC
Confidence 88888644
No 154
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=31.81 E-value=7.8e+02 Score=28.11 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=33.9
Q ss_pred ceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHCCCcEEEeCccccc
Q 002787 335 ISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQF 393 (881)
Q Consensus 335 ~vIYElHVRdFs~~d~s~~~~~rG~y~g~tek~~~~i~hL~~L~~lGvT~I~LlPvfd~ 393 (881)
--||=++|.+=+..... -+...|-|.==. ...++.++++.++||.+|-|.||-+.
T Consensus 32 dLI~PiFV~eg~~~~~~-I~SMPgv~r~s~---d~l~~~~~~~~~lGi~av~LFgvp~~ 86 (330)
T COG0113 32 DLIYPIFVVEGENIKEE-IPSMPGVYRYSL---DRLVEEAEELVDLGIPAVILFGVPDD 86 (330)
T ss_pred HeeEeEEEecCCCCccc-cCCCCCceeccH---HHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 35777777654321111 122345553211 24567889999999999999998754
No 155
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=31.68 E-value=70 Score=35.00 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEcCCC
Q 002787 559 MVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 559 mv~k~i~Dsl~~W~~eygIDGFRfDlm~ 586 (881)
..++-.++|+..++++||+||.-+|--.
T Consensus 96 ~~~~~fv~S~~~~l~~~~fDGiDiDwE~ 123 (253)
T cd06544 96 SWVSNAVSSLTSIIQTYNLDGIDIDYEH 123 (253)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeeeccc
Confidence 4556678999999999999999999873
No 156
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.32 E-value=1.1e+02 Score=32.62 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcCCEEEE
Q 002787 489 TIEFRRMVQALNHIGLHVVL 508 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIl 508 (881)
.++++++.+.+.++|++|++
T Consensus 192 ~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 192 SADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCeEEe
Confidence 45788888889999999974
No 157
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=30.85 E-value=39 Score=38.44 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCCEEEEEeec
Q 002787 490 IEFRRMVQALNHIGLHVVLDVVY 512 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDVVy 512 (881)
.-|+++++.||+.||+||.||-.
T Consensus 49 ~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCH
Confidence 35999999999999999999855
No 158
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=30.75 E-value=8.6e+02 Score=27.83 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhh--cCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCC
Q 002787 478 SYASNPNGSCRTIEFRRMVQALNH--IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTAS 555 (881)
Q Consensus 478 sYgt~~dg~~ri~Efr~mV~alH~--~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~ 555 (881)
+.+-+++|. +.+.|+++++ -.|-||-||-+-+-...|-. |-+.+ + .-
T Consensus 87 s~A~~~~g~-----v~~air~iK~~~p~l~vi~DVclc~YT~hGHc--------------------Gil~~-----~-~i 135 (320)
T cd04823 87 SEAYNPDNL-----VCRAIRAIKEAFPELGIITDVALDPYTSHGHD--------------------GIVRD-----G-GI 135 (320)
T ss_pred ccccCCCCh-----HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcc--------------------eeccC-----C-cC
Confidence 334455553 4444555554 38999999999765543321 11110 0 13
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhcc
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~ 604 (881)
.|...-+.+.+..+..++- |.|=. +-+.|+......+|++|++-.
T Consensus 136 dND~Tl~~L~~~Avs~A~A-GADiV---APSdMMDGrV~aIR~aLd~~g 180 (320)
T cd04823 136 LNDETVEVLCKQALVQAEA-GADIV---APSDMMDGRIGAIREALDAEG 180 (320)
T ss_pred cCHHHHHHHHHHHHHHHHh-CCCEE---EcccchhhHHHHHHHHHHHCC
Confidence 3455666676666666765 76643 345556666778888877654
No 159
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=29.73 E-value=89 Score=35.40 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHHHHHhCCceEEEEcCCC
Q 002787 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (881)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~eygIDGFRfDlm~ 586 (881)
.++..|+-++++++.|+++|++||.-+|-..
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 122 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY 122 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec
Confidence 3456788889999999999999999999653
No 160
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=29.34 E-value=98 Score=33.02 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=13.4
Q ss_pred hHHHHHHCCCcEEEeCcccccCC
Q 002787 373 HLKKLSNAGLTHVHLLPTFQFAG 395 (881)
Q Consensus 373 hL~~L~~lGvT~I~LlPvfd~~t 395 (881)
-+.-|+++|++.|-.+|+---..
T Consensus 140 Aiaml~dmG~~SiKffPm~Gl~~ 162 (218)
T PF07071_consen 140 AIAMLKDMGGSSIKFFPMGGLKH 162 (218)
T ss_dssp HHHHHHHTT--EEEE---TTTTT
T ss_pred HHHHHHHcCCCeeeEeecCCccc
Confidence 36678999999999999864443
No 161
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=29.24 E-value=2.3e+02 Score=25.25 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=34.2
Q ss_pred eeEEEEEcCC-CCeEEEEEeeCCCCCCCceEEec-ccCCCEEEEEcCC-C-----CCCcEEEEEEEe
Q 002787 218 TVSLYLWAPT-AQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPK-S-----WEGCYYVYEVSV 276 (881)
Q Consensus 218 ~v~F~vWAPt-A~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~v~~-~-----~~G~~Y~Y~V~~ 276 (881)
.++|.+..|. |.+|.|.||+... +..+.+.+ ....|.-++.-++ + .+--.|.|+|..
T Consensus 13 ~~~~~~~l~~~a~~v~v~I~d~~G--~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 13 KGSIEYTLPEDADNVTVTIYDSNG--QVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTS---EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEEeCCCcccEEEEEEEcCCC--CEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 5678877886 5679999999753 34566677 3445654444331 1 222358888875
No 162
>PLN03059 beta-galactosidase; Provisional
Probab=29.06 E-value=97 Score=39.50 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCEEEEE
Q 002787 489 TIEFRRMVQALNHIGLHVVLD 509 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlD 509 (881)
..+|+++++.+++.||.||+=
T Consensus 97 ~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 97 RYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred hHHHHHHHHHHHHcCCEEEec
Confidence 457999999999999999984
No 163
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.24 E-value=5.4e+02 Score=29.54 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhhcCCEEEEEe-eccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHH
Q 002787 488 RTIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIID 566 (881)
Q Consensus 488 ri~Efr~mV~alH~~GirVIlDV-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~D 566 (881)
.+..+++++++||+.||.+|+-+ +|-.... ..++ ..| +... -++|..
T Consensus 141 ~~~~l~rv~~ec~~~giPlllE~l~y~~~~~----~~~~------~~~-------------------a~~~---p~~V~~ 188 (340)
T PRK12858 141 KHAFVERVGAECRANDIPFFLEPLTYDGKGS----DKKA------EEF-------------------AKVK---PEKVIK 188 (340)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeccCCCcc----cccc------ccc-------------------cccC---HHHHHH
Confidence 35679999999999999999985 6654211 0000 001 0011 258999
Q ss_pred HHHHHHH-hCCceEEEEcCCCcc
Q 002787 567 DLLCWAV-NYKVDGFRFDLMGHI 588 (881)
Q Consensus 567 sl~~W~~-eygIDGFRfDlm~h~ 588 (881)
+++...+ +||+|=+-....+.+
T Consensus 189 a~r~~~~~elGaDvlKve~p~~~ 211 (340)
T PRK12858 189 TMEEFSKPRYGVDVLKVEVPVDM 211 (340)
T ss_pred HHHHHhhhccCCeEEEeeCCCCc
Confidence 9999887 899988888776554
No 164
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=27.39 E-value=1.1e+02 Score=35.78 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcCCEEEEEe
Q 002787 491 EFRRMVQALNHIGLHVVLDV 510 (881)
Q Consensus 491 Efr~mV~alH~~GirVIlDV 510 (881)
-+.+.|+.+.++||+|++|+
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEe
Confidence 46677999999999999995
No 165
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.65 E-value=60 Score=35.50 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=20.3
Q ss_pred CcccccccccchhhhhhHHHHHHCCCcEEEeC
Q 002787 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLL 388 (881)
Q Consensus 357 rG~y~g~tek~~~~i~hL~~L~~lGvT~I~Ll 388 (881)
.||+.-+.-.....-++|++++++|+++|++.
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiS 104 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEIS 104 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE-
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEec
Confidence 36664333332345578999999999999986
No 166
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.42 E-value=3.8e+02 Score=29.49 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
++.++++|+.+++.|++|+.-+.+-.. + +. -.+++.+.+
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~---~-----------------~~---------------------~~~~~~~~~ 155 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGS---P-----------------VH---------------------TLEYYVKLA 155 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCC---C-----------------CC---------------------CHHHHHHHH
Confidence 567888888888999888764433111 0 00 113555555
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i 603 (881)
+.. .++|+|-+++ |.+|.+.+..+.+....+++.
T Consensus 156 ~~~-~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 156 KEL-EDMGADSICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHH-HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 554 4689999998 999999988877777777654
No 167
>PF15260 FAM219A: Protein family FAM219A
Probab=25.49 E-value=28 Score=34.01 Aligned_cols=8 Identities=63% Similarity=1.913 Sum_probs=4.6
Q ss_pred ceecccCC
Q 002787 56 RCCCCCSS 63 (881)
Q Consensus 56 ~~~~~~~~ 63 (881)
+|||||++
T Consensus 112 ~~~~C~~~ 119 (125)
T PF15260_consen 112 SCCCCQPS 119 (125)
T ss_pred cccccCCC
Confidence 46666544
No 168
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.39 E-value=1.2e+02 Score=29.09 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHCCCcEEEeCc
Q 002787 369 AGVSHLKKLSNAGLTHVHLLP 389 (881)
Q Consensus 369 ~~i~hL~~L~~lGvT~I~LlP 389 (881)
...+.++++.++|+.++|+.|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 456789999999999999987
No 169
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=25.30 E-value=3e+02 Score=28.87 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=43.8
Q ss_pred CccEEeCCeeEEEEEcCCC--CeEEEEEeeCCCCCCCceEEecccCCCEEEEEcCC----CCCCcEEEEEEEe
Q 002787 210 LGALYAEETVSLYLWAPTA--QSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPK----SWEGCYYVYEVSV 276 (881)
Q Consensus 210 LGa~~~~~~v~F~vWAPtA--~~V~L~ly~~~~~~~~~~~~~M~~~~GvWsv~v~~----~~~G~~Y~Y~V~~ 276 (881)
+|-+.. ...||-++-|.. ..+.+.|.+..+...-...+++....|+-++.+|. ...|+.|++.+..
T Consensus 28 ~g~T~~-~~PTf~~YvP~~~~~~~eF~L~d~~~~~iy~~~~~l~~~~GIv~i~LP~~~~~Le~gk~Y~W~~~l 99 (189)
T PF06051_consen 28 VGLTVS-EHPTFWFYVPYTSAETVEFVLQDEQGNPIYQTTFPLPQQPGIVSITLPEDQPPLEVGKTYRWYFSL 99 (189)
T ss_pred cccccC-CCCEEEEEecCCCCcceEEEEecCCCCEEeEEEEecCCCCCEEEEECCCCCCCCCCCCeEEEEEEE
Confidence 455443 467888888854 44666677665321111245556789999999983 3579999999974
No 170
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.30 E-value=3.6e+02 Score=30.80 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhc
Q 002787 562 RLIIDDLLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (881)
Q Consensus 562 k~i~Dsl~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i 603 (881)
+++.+.++. +.++|+|.+++ |.+|.+.+..+.+....+++.
T Consensus 144 e~l~~~a~~-~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 144 EKLAEQAKL-MESYGAQCVYVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred HHHHHHHHH-HHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 455555555 46799999996 999999888777777777654
No 171
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=24.73 E-value=62 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=21.6
Q ss_pred hhhhhHHHHHHCCCcEEEeCcccccC
Q 002787 369 AGVSHLKKLSNAGLTHVHLLPTFQFA 394 (881)
Q Consensus 369 ~~i~hL~~L~~lGvT~I~LlPvfd~~ 394 (881)
..-+-|+.|++.|++.|.++|+|-+.
T Consensus 46 ~i~~~l~~l~~~g~~~vvvvPl~~~~ 71 (101)
T cd03409 46 DTEEAIRELAEEGYQRVVIVPLAPVS 71 (101)
T ss_pred CHHHHHHHHHHcCCCeEEEEeCcccc
Confidence 34456888999999999999999874
No 172
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=24.52 E-value=2.6e+02 Score=31.85 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=49.4
Q ss_pred HHHHHHHHhhc--CCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHH
Q 002787 492 FRRMVQALNHI--GLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (881)
Q Consensus 492 fr~mV~alH~~--GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (881)
+.+.|+++++. .|-||-||-+-.-...|-.+ +++ .+|. -.|...-+.+.+..+
T Consensus 94 v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcG---il~-----------~~g~-----------vdND~Tl~~L~k~Av 148 (320)
T cd04824 94 VIQAIKLIREEFPELLIACDVCLCEYTSHGHCG---ILY-----------EDGT-----------INNEASVKRLAEVAL 148 (320)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcce---eEC-----------CCCc-----------CcCHHHHHHHHHHHH
Confidence 45555555544 89999999997654433211 111 0121 234455566666666
Q ss_pred HHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhcc
Q 002787 570 CWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 570 ~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~ 604 (881)
..++- |.|=. +-+.|+......+|++|++-.
T Consensus 149 s~A~A-GADiV---APSdMMDGrV~aIR~aLD~~G 179 (320)
T cd04824 149 AYAKA-GAHIV---APSDMMDGRVRAIKQALIQAG 179 (320)
T ss_pred HHHHh-CCCEE---ecccccccHHHHHHHHHHHCC
Confidence 66765 76643 445566666778888887654
No 173
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=24.32 E-value=1.3e+02 Score=34.22 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCceEEEEcCC
Q 002787 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (881)
Q Consensus 557 ~~mv~k~i~Dsl~~W~~eygIDGFRfDlm 585 (881)
++..|+-+++++..++++|++||+-+|--
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 56788889999999999999999999988
No 174
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.08 E-value=4.9e+02 Score=28.75 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
++..+++|+.+++.|+.|..-+-+......+. +. -.+++++.+
T Consensus 113 ~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~----------------~~---------------------~~~~~~~~~ 155 (274)
T cd07938 113 LERFEPVAELAKAAGLRVRGYVSTAFGCPYEG----------------EV---------------------PPERVAEVA 155 (274)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeEecCCCCC----------------CC---------------------CHHHHHHHH
Confidence 55688889999999999988777764421100 00 124677777
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhcc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~ 604 (881)
+... ++|+|.+++ |.+|.+.+..+.+....|++..
T Consensus 156 ~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 156 ERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred HHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHHHHC
Confidence 7754 689999988 9999998887777777776543
No 175
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=23.87 E-value=60 Score=36.25 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.3
Q ss_pred HHH-HHHHHHHHhhcCCEEEEEee
Q 002787 489 TIE-FRRMVQALNHIGLHVVLDVV 511 (881)
Q Consensus 489 i~E-fr~mV~alH~~GirVIlDVV 511 (881)
|+| .|+||+++++. |.||||+-
T Consensus 135 IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred HHHHHHHHHHHhcce-eEEEeecc
Confidence 665 79999999998 99999974
No 176
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.86 E-value=4.1e+02 Score=28.78 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
++.++++|+.++++|+.|.+ |-... .+. -.+++.+.+
T Consensus 109 ~~~~~~~i~~a~~~G~~v~~----~~~~~------------------~~~---------------------~~~~~~~~~ 145 (259)
T cd07939 109 LDQLRRLVGRAKDRGLFVSV----GAEDA------------------SRA---------------------DPDFLIEFA 145 (259)
T ss_pred HHHHHHHHHHHHHCCCeEEE----eeccC------------------CCC---------------------CHHHHHHHH
Confidence 56789999999999998763 22100 010 014566666
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhcc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~ 604 (881)
+.. .++|+|.+++ |.+|.+.+..+.+....+++..
T Consensus 146 ~~~-~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 146 EVA-QEAGADRLRFADTVGILDPFTTYELIRRLRAAT 181 (259)
T ss_pred HHH-HHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 654 4689999998 8999998887777777776543
No 177
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.74 E-value=4.5e+02 Score=27.94 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
+++..+.|+.+++.|+.|.+.+..-.. | ..-.+++.+.+
T Consensus 114 ~~~~~~~i~~a~~~G~~v~~~~~~~~~---------------------------------~--------~~~~~~l~~~~ 152 (265)
T cd03174 114 LENAEEAIEAAKEAGLEVEGSLEDAFG---------------------------------C--------KTDPEYVLEVA 152 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecC---------------------------------C--------CCCHHHHHHHH
Confidence 677889999999999988876633211 0 00113555556
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhccc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLTK 605 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~p 605 (881)
+.+ .++|+|.+++ |..|.+.+..+.+....+++..+
T Consensus 153 ~~~-~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 153 KAL-EEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHH-HHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 664 4789999999 99999999888888888877653
No 178
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=23.72 E-value=59 Score=37.78 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeccccCC
Q 002787 490 IEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (881)
Q Consensus 490 ~Efr~mV~alH~~GirVIlDVVyNHt~~ 517 (881)
+-|+++...+|+.||-||-|=||.|+.-
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 4699999999999999999999999874
No 179
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=23.65 E-value=2.6e+02 Score=31.85 Aligned_cols=83 Identities=14% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHHHHhhc--CCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHH
Q 002787 492 FRRMVQALNHI--GLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (881)
Q Consensus 492 fr~mV~alH~~--GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (881)
..+-|+++++. .|-||-||-+-.-...|-.+ +++ +|. -.|...-+.+....+
T Consensus 101 v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcG---il~------------~g~-----------i~ND~Tl~~L~~~Al 154 (322)
T PRK13384 101 LARMVRTIKAAVPEMMVIPDICFCEYTDHGHCG---VLH------------NDE-----------VDNDATVENLVKQSV 154 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeeeecccCCCCCcee---ecc------------CCc-----------CccHHHHHHHHHHHH
Confidence 44555556654 89999999997654433211 110 111 234455566666666
Q ss_pred HHHHhCCceEEEEcCCCcccHHHHHHHHHHHHhcc
Q 002787 570 CWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 570 ~W~~eygIDGFRfDlm~h~~~~~~~~~~~~l~~i~ 604 (881)
..++- |.|=. +-+.|+......+|++|++-.
T Consensus 155 s~A~A-GADiV---APSdMMDGrV~aIR~aLd~~g 185 (322)
T PRK13384 155 TAAKA-GADML---APSAMMDGQVKAIRQGLDAAG 185 (322)
T ss_pred HHHHc-CCCeE---ecccccccHHHHHHHHHHHCC
Confidence 66764 76643 445566667778888887654
No 180
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.56 E-value=2.1e+02 Score=32.51 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeecccc
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHL 515 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt 515 (881)
++-.-+|-+.+...||+|++|+-|...
T Consensus 103 ~~k~ieiakRAk~~GmKVl~dFHYSDf 129 (403)
T COG3867 103 LKKAIEIAKRAKNLGMKVLLDFHYSDF 129 (403)
T ss_pred HHHHHHHHHHHHhcCcEEEeeccchhh
Confidence 445566677888999999999988543
No 181
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=22.58 E-value=1.6e+02 Score=27.27 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=33.3
Q ss_pred eEEEEEcCCC--CeEEEEEee-CCCCCCCceEEec-ccCCCEEEEEcCCC-CCCcEEEEEEE
Q 002787 219 VSLYLWAPTA--QSVSACIYR-DPLGGNPLEVVQL-KENDGVWSIKGPKS-WEGCYYVYEVS 275 (881)
Q Consensus 219 v~F~vWAPtA--~~V~L~ly~-~~~~~~~~~~~~M-~~~~GvWsv~v~~~-~~G~~Y~Y~V~ 275 (881)
++|++-+++. +.|.|+--. .-..+.+...++| ...+..|++.+.-. .....|+|-+.
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i~ 63 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFVS 63 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEEE
Confidence 6788888766 556554211 1122345566788 45567998887532 23355777664
No 182
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.17 E-value=4.6e+02 Score=28.58 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
++.++++|+.+++.|++|. |+-... .+. -.+++.+.+
T Consensus 113 ~~~~~~~i~~a~~~G~~v~----~~~~~~------------------~~~---------------------~~~~~~~~~ 149 (268)
T cd07940 113 LERAVEAVEYAKSHGLDVE----FSAEDA------------------TRT---------------------DLDFLIEVV 149 (268)
T ss_pred HHHHHHHHHHHHHcCCeEE----EeeecC------------------CCC---------------------CHHHHHHHH
Confidence 5678899999999999877 321100 000 113555555
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhcc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~ 604 (881)
+.. .++|+|.+++ |.+|.+.+..+.+....+++..
T Consensus 150 ~~~-~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 150 EAA-IEAGATTINIPDTVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred HHH-HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhC
Confidence 554 4689999998 9999998887777777776643
No 183
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=22.11 E-value=78 Score=35.24 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhcCCEEEEEee
Q 002787 488 RTIEFRRMVQALNHIGLHVVLDVV 511 (881)
Q Consensus 488 ri~Efr~mV~alH~~GirVIlDVV 511 (881)
.++|+|++.+-||++||.|.||.-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 588999999999999999999964
No 184
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=22.05 E-value=2.2e+02 Score=26.30 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=35.1
Q ss_pred eeEEEEEcCCC---CeEEEEEe-eCCCCCCCceEEec-ccCCCEEEEEcCCCCC--CcEEEEEEE
Q 002787 218 TVSLYLWAPTA---QSVSACIY-RDPLGGNPLEVVQL-KENDGVWSIKGPKSWE--GCYYVYEVS 275 (881)
Q Consensus 218 ~v~F~vWAPtA---~~V~L~ly-~~~~~~~~~~~~~M-~~~~GvWsv~v~~~~~--G~~Y~Y~V~ 275 (881)
.|+|+|-.|.- ++|.|+-- ..-..+.+...++| ......|++.++-... ...|+|-+.
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~ 65 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIA 65 (99)
T ss_pred CEEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEE
Confidence 37899999853 45665411 11122345567788 4566789988764332 245888775
No 185
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.60 E-value=75 Score=29.95 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=21.3
Q ss_pred hhhhHHHHHHCCCcEEEeCcccccCC
Q 002787 370 GVSHLKKLSNAGLTHVHLLPTFQFAG 395 (881)
Q Consensus 370 ~i~hL~~L~~lGvT~I~LlPvfd~~t 395 (881)
.-+=+++|++.|++.|.|+|+|=++.
T Consensus 44 i~~~l~~l~~~G~~~i~lvPl~L~~G 69 (103)
T cd03413 44 LDDVLAKLKKAGIKKVTLMPLMLVAG 69 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEehhheec
Confidence 34457788999999999999998765
No 186
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.28 E-value=2.5e+02 Score=32.45 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHHHHH
Q 002787 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (881)
Q Consensus 492 fr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W 571 (881)
...||+.+|++||+|+.=-|=+ ++ ..+. .|++|.+... +.... ..-|.+-+..+
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~----~~-----~~~~--~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~ 333 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLER----SG-----PLAS--GGGWYYQTIE-----------DVINN----DGDMYNVLDVL 333 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeec----Cc-----cccc--Cccccccccc-----------ccccc----cccHHHHHHHH
Confidence 5689999999999998533311 11 1122 3655544311 11000 12344556677
Q ss_pred HHhCCceEEEEcCC
Q 002787 572 AVNYKVDGFRFDLM 585 (881)
Q Consensus 572 ~~eygIDGFRfDlm 585 (881)
+.+.||||+=-|-.
T Consensus 334 ~~~~GvDGvftD~p 347 (356)
T cd08560 334 ARDVGILGIFSDWP 347 (356)
T ss_pred HHhcCCCEEEccCC
Confidence 77899999977754
No 187
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=20.98 E-value=1.1e+02 Score=33.13 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccc
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNH 514 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNH 514 (881)
+++++++++.||+.|+.||+|-++..
T Consensus 151 ~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 151 EEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHHHHHHHHHhCCeEEEEecchhh
Confidence 67899999999999999999999854
No 188
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.97 E-value=4.9e+02 Score=29.70 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhc
Q 002787 562 RLIIDDLLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (881)
Q Consensus 562 k~i~Dsl~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i 603 (881)
+++.+.++. +.++|+|.+.+ |.+|.+.+..+.+...++++.
T Consensus 143 e~l~~~a~~-~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 143 EKLAEQAKL-MESYGADCVYIVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred HHHHHHHHH-HHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 345555554 66899999987 999999888877777777654
No 189
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.96 E-value=3.9e+02 Score=28.23 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
++.++++|+.++++|+.| .++-+... +. ..+++.+.+
T Consensus 107 ~~~~~~~v~~ak~~g~~v----~~~~~~~~------------------~~---------------------~~~~~~~~~ 143 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEV----AFGCEDAS------------------RT---------------------DPEELLELA 143 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE----EEEETTTG------------------GS---------------------SHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCce----EeCccccc------------------cc---------------------cHHHHHHHH
Confidence 668999999999999999 22221100 00 013455555
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhccc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLTK 605 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~p 605 (881)
+. +.++|+|.+++ |..|.+.+..+.++...+++.-+
T Consensus 144 ~~-~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 144 EA-LAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp HH-HHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred HH-HHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 55 45679999997 79999999988888888877654
No 190
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=20.78 E-value=5.4e+02 Score=28.52 Aligned_cols=76 Identities=8% Similarity=0.088 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHH
Q 002787 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (881)
Q Consensus 488 ri~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (881)
-+++++++|+.+++.|++|.+.+- +.+. .| |.+ .+++.+.
T Consensus 113 ~l~~~~~~i~~a~~~G~~v~~~~~--d~~~----------------~~-r~~---------------------~~~~~~~ 152 (280)
T cd07945 113 HFADIREVIEYAIKNGIEVNIYLE--DWSN----------------GM-RDS---------------------PDYVFQL 152 (280)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEE--eCCC----------------CC-cCC---------------------HHHHHHH
Confidence 367899999999999998876543 2210 11 111 1467777
Q ss_pred HHHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhcc
Q 002787 568 LLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 568 l~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~ 604 (881)
++... ++|+|-+++ |.+|.+.+..+.+....+++..
T Consensus 153 ~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 153 VDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHHhhC
Confidence 77764 679999887 9999998887777777776543
No 191
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=20.69 E-value=43 Score=27.71 Aligned_cols=11 Identities=64% Similarity=1.793 Sum_probs=5.9
Q ss_pred cCCccceeccc
Q 002787 51 VHPRFRCCCCC 61 (881)
Q Consensus 51 ~~~~~~~~~~~ 61 (881)
|-|---|||||
T Consensus 21 vapggcccccc 31 (56)
T TIGR03602 21 VAPGGCCCCCC 31 (56)
T ss_pred ecCCCeEEEec
Confidence 55655555544
No 192
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.58 E-value=5e+02 Score=29.92 Aligned_cols=78 Identities=12% Similarity=-0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeeccccCCCCCCCCCCccCCCCCCCceecCCCCccccCCCCCCCCCCChHHHHHHHHHH
Q 002787 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (881)
Q Consensus 489 i~Efr~mV~alH~~GirVIlDVVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (881)
+++++++|+.+++.|++|..-+-+--. .+ |..+. -.+++++.+
T Consensus 161 l~~~~~~v~~Ak~~Gl~v~~~is~~fg---~p-------------~~~r~---------------------~~~~l~~~~ 203 (347)
T PLN02746 161 LVRYREVALAAKKHSIPVRGYVSCVVG---CP-------------IEGPV---------------------PPSKVAYVA 203 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeec---CC-------------ccCCC---------------------CHHHHHHHH
Confidence 667889999999999998543322100 01 11111 124677777
Q ss_pred HHHHHhCCceEEEE-cCCCcccHHHHHHHHHHHHhcc
Q 002787 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (881)
Q Consensus 569 ~~W~~eygIDGFRf-Dlm~h~~~~~~~~~~~~l~~i~ 604 (881)
+..+ +.|+|-+++ |.+|......+.++...|++..
T Consensus 204 ~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 204 KELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHHHhC
Confidence 7765 579998887 9999998887777777776543
Done!