BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002789
(881 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IBV|A Chain A, Karyopherin Cytosolic State
pdb|3IBV|B Chain B, Karyopherin Cytosolic State
pdb|3ICQ|T Chain T, Karyopherin Nuclear State
pdb|3ICQ|U Chain U, Karyopherin Nuclear State
Length = 980
Score = 213 bits (541), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 217/874 (24%), Positives = 400/874 (45%), Gaps = 65/874 (7%)
Query: 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQ--VQFWCL 60
D+E A+ + D S + ++K QA +F ++ + + +IC E S + + CL
Sbjct: 7 DVENAVEAALDPS--VGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICL 64
Query: 61 QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
QTLSE VR + E +IR+SV+S + + L+ PA+I N + +L
Sbjct: 65 QTLSEKVREWNNESNLLELQMIRDSVWSYI--------KELSFLDEPAYISNAVQHLLTL 116
Query: 121 LIYFEYPLIWSSVFVDFLPQLNKGSM--VIDMFCRVLNSLDDELISLDYPRTADELTVAA 178
L YP W+ F + S + + +VL S+ DE+ +T ++
Sbjct: 117 LFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDN 176
Query: 179 RIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGV-LDCMRRYISWIDINLIANDAFIP 237
+KDA+R + IV Y+++ Y ++ G+ L +++SWI+INLI N+ +
Sbjct: 177 LVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMN 236
Query: 238 LLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDG-ESE 296
LL+ + E+ R AA + +V+K+M P KLNLL L ++ F E +
Sbjct: 237 LLYSFLQI----EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN 292
Query: 297 LVSKVAALLTGYAMEVLDCVK----RLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTF 352
VA L+ +E++ +K L+ E S +L N + P + + + +T+
Sbjct: 293 FDEHVAKLINAQGVELV-AIKSDPSELSPELKENCSFQLYN-LFPYLIRYLSDDYDETST 350
Query: 353 SIVQFLSGYVATMKSLSPLKE---EQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIE 409
++ FLS + +++ S KE + +LE I+ +++YD + D E
Sbjct: 351 AVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD----DDPDSE 406
Query: 410 EEDRMVEYRKDLLVLLRSVGRVAPEVTQVF----IRNSLANAVTFSADRNVEEVEAALTL 465
EE E RK L + ++ + + + I +SL+ A T S + + + +E AL
Sbjct: 407 EEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYE 466
Query: 466 LYALGESMSE-----EAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI 520
Y GE + + LS+++ ++ +++ H + LV L+Y+E + RY F
Sbjct: 467 TYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFF 526
Query: 521 QEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD- 579
+ IP ++ F+ RGIH+ N V RA YLF R VK +K ++V + E+ L L D
Sbjct: 527 DYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDL 586
Query: 580 ---TIARFTSMNYASKELSGSEDGS------HIFEAIGLLIGMEDVPPEKQSDYLSSLLT 630
+++ T M+ L+ S S ++FE +G+LI ++ PE+Q+ Y SL+
Sbjct: 587 LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLIN 646
Query: 631 PLCQQVQTMLLDAKMLNPEESTAKFXXXXXXXXXXXXLSKGFNERLVTSSRPAIGLMFKQ 690
L + +A + + + +KGF R S A F +
Sbjct: 647 ALIGKA-----NAALSSDLSALENIISVYCSLMAIGNFAKGFPAR--GSEEVAWLASFNK 699
Query: 691 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGF 750
D + IL E +R V R+++ +G + P +P+ + LL + E+
Sbjct: 700 ASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDV 759
Query: 751 LVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTL 810
L ++QLI + + +I + + P + RIF+ + A P G T++ + +L+++
Sbjct: 760 LSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSL--SAAPQG----TDDAVKQNDLRKSY 813
Query: 811 YTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLY 844
+F+ + S+ + +++ Y DP++ +L+
Sbjct: 814 ISFILQLLNKGFGSILFTEENQVYFDPLINSILH 847
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 25 QAVNFCQQIKETPSICRICIEKLS-LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIR 83
+A+ FC++ KE IC C +L+ + V+ + LQ L VV+ ++ MS E+ ++
Sbjct: 32 EALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK 91
Query: 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK 143
SV ++ ++ +LE I++ L++++V +I E+P W + ++ +
Sbjct: 92 NSVMELI------ANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ 145
Query: 144 GSMVIDMFCRVLNSLDDELISL 165
G ++ +L L +++++
Sbjct: 146 GETQTELVMFILLRLAEDVVTF 167
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 133/625 (21%), Positives = 246/625 (39%), Gaps = 123/625 (19%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAA 256
+ ++ SS V T L+ + RY+ WI I + LL + P+ R
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDT-RAIT 254
Query: 257 VGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCV 316
+ C+ V + ++ PQ N L Q F + + ++ A L YA
Sbjct: 255 LKCLTEVSNLKI-PQD--NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA------- 304
Query: 317 KRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQR 376
NAN + L + + FL+ Y+A ++L E R
Sbjct: 305 ------NANGNDQSFLQD-------------------LAMFLTTYLARNRALLESDESLR 339
Query: 377 ---LHAGQILEVILTQIRYDPMYRNNLD-----VLD------KIGIEEE----------D 412
L+A Q L + L++I +++ LD V D K I EE +
Sbjct: 340 ELLLNAHQYL-IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIE 398
Query: 413 RMVEYRKDLLVLLRSVGRVAPEVTQ----VFIRNSLANAVTFSADRNVEEVEAAL----- 463
MV +++LV+ G + E + + + S + + NV + E +
Sbjct: 399 NMVR-PEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLA 457
Query: 464 --------------TLLYALGE---SMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLV 505
TL +A+G +MSE+ R + +L+ + ++ K + +V
Sbjct: 458 RQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVK-KRGKDNKAVV 516
Query: 506 ALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 565
A + V +Y +F++ H ++ V+ A + +H + V A F+++V+ K
Sbjct: 517 ASDIMYVVGQYPRFLKAHWNFLRTVILALFE--FMHETHEGVQDMACDTFIKIVQKCKYH 574
Query: 566 LV--------PFIENILQSLQDTIA 582
V PFI+ I++ +Q T A
Sbjct: 575 FVIQQPRESEPFIQTIIRDIQKTTA 599
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 240
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 240
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 240
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 132/625 (21%), Positives = 245/625 (39%), Gaps = 123/625 (19%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAA 256
+ ++ SS V T L+ + RY+ WI I + LL + P+ R
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDT-RAIT 254
Query: 257 VGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCV 316
+ C+ V + ++ PQ N L Q F + + ++ A L YA
Sbjct: 255 LKCLTEVSNLKI-PQD--NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA------- 304
Query: 317 KRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQR 376
NAN + L + + FL+ Y+A ++L E R
Sbjct: 305 ------NANGNDQSFLQD-------------------LAMFLTTYLARNRALLESDESLR 339
Query: 377 ---LHAGQILEVILTQIRYDPMYRNNLD-----VLD------KIGIEEE----------D 412
L+A Q L + L++I +++ LD V D K I EE +
Sbjct: 340 ELLLNAHQYL-IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIE 398
Query: 413 RMVEYRKDLLVLLRSVGRVAPEVTQ----VFIRNSLANAVTFSADRNVEEVEAAL----- 463
MV +++LV+ G + E + + + S + + NV + E +
Sbjct: 399 NMVR-PEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLA 457
Query: 464 --------------TLLYALGE---SMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLV 505
TL +A+G +MSE+ R + +L+ + ++ K + +V
Sbjct: 458 RQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVK-KRGKDNKAVV 516
Query: 506 ALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 565
A + V +Y +F++ H ++ V+ + +H + V A F+++V+ K
Sbjct: 517 ASDIMYVVGQYPRFLKAHWNFLRTVILKLFE--FMHETHEGVQDMACDTFIKIVQKCKYH 574
Query: 566 LV--------PFIENILQSLQDTIA 582
V PFI+ I++ +Q T A
Sbjct: 575 FVIQQPRESEPFIQTIIRDIQKTTA 599
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 31 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 90
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 91 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 142
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 143 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 197
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 198 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 238
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 240
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 240
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 125/604 (20%), Positives = 254/604 (42%), Gaps = 81/604 (13%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAA 256
+ ++ SS V T L+ + RY+ WI I + LL + P+ R
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDT-RAIT 254
Query: 257 VGCVLAVVSKRMDPQSKLNLLQTL--------QISRVFGLVSEDGESELVSKVA---ALL 305
+ C+ V + ++ + L QT+ QI+ V+ D ++ + + L
Sbjct: 255 LKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314
Query: 306 TGYAMEVLDCVKRLNA-ENANEASKKLLNEVLPSVFYVMQNCEVDTT---FSIVQFLSGY 361
AM + + R A ++E+ ++LL L + Y++Q +++ + + +
Sbjct: 315 QDLAMFLTTYLARNRALLESDESLRELL---LNAHQYLIQLSKIEERELFKTTLDYWHNL 371
Query: 362 VATMKSLSPLKEEQRLHAGQILEVILTQIRY---DPMYR--------NNLDVLDKIGIEE 410
VA + PLK+ I E I +Q+R + M R N+ + + ++E
Sbjct: 372 VADL-FYEPLKK-------HIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423
Query: 411 EDRMVEYR--KDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS--ADRNVEEVEAALTLL 466
D + Y+ +++LV L + + E + + LA + S + N+ + A+
Sbjct: 424 SDTIQLYKSEREVLVYLTHLNVIDTEEIMI---SKLARQIDGSEWSWHNINTLSWAIG-- 478
Query: 467 YALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQY 526
++ +MSE+ + + + + L + K + +VA + V +Y +F++ H +
Sbjct: 479 -SISGTMSEDTEKRFVVTVIKDLLGLCEQKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF 537
Query: 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--------PFIENILQSLQ 578
+ V+ + +H + V A F+++V+ K V PFI+ I++ +Q
Sbjct: 538 LRTVILKLFE--FMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQ 595
Query: 579 DTIA 582
T A
Sbjct: 596 KTTA 599
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 240
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82
+ QA + ++ P + + L Q +F L L +++ K+ + ++ R I
Sbjct: 33 QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
Query: 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLN 142
R V M+ D + V ++ + NK LV ++ E+P W +F+P+L
Sbjct: 93 RNFVVGMIISMCQDDE----VFKTQKNLINKSDLTLVQILKQEWPQNWP----EFIPELI 144
Query: 143 KGSMVIDMFCR----VLNSLDDELISLDYPRTADELTVAA--RIKDAMRQQCVEQIVRAW 196
S C VL L +E+ +A+++T A +K++M ++ EQI +
Sbjct: 145 GSSSSSVNVCENNMIVLKLLSEEVFDF----SAEQMTQAKALHLKNSMSKE-FEQIFKLC 199
Query: 197 YDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239
+ ++ SS V T L+ + RY+ WI I + LL
Sbjct: 200 FQVLEQGSSSSLIVAT--LESLLRYLHWIPYRYIYETNILELL 240
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 131/677 (19%), Positives = 264/677 (38%), Gaps = 123/677 (18%)
Query: 32 QIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVC 91
+KE P L + +++ LQ L V++ ++ + + I++ V ++
Sbjct: 52 HLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI- 110
Query: 92 CELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMF 151
+ S +E KL +LV ++ E+P W + F+ + S +
Sbjct: 111 ---IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT----FISDIVGASRTSESL 163
Query: 152 CR----VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVE--QIVRAWYDIVSMYRS 205
C+ +L L +E+ D+ + +KD+M C E QI + + M S
Sbjct: 164 CQNNMVILKLLSEEV--FDFSSGQITQVKSKHLKDSM---CNEFSQIFQLCQFV--MENS 216
Query: 206 SDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAV-- 263
+ + L+ + R+++WI + I I L L +P FR ++ C+ +
Sbjct: 217 QNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVP-MFRNVSLKCLTEIAG 273
Query: 264 --VSKRMDPQSKLNLLQTLQISRVFGLVS---------EDGESELVSKVAALLTGYAMEV 312
VS+ + L L +Q+ ++ L + +D E + ++ L + E
Sbjct: 274 VSVSQYEEQFVTLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH 333
Query: 313 LDCV-KRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTT--FSI-VQFLSGYVATMKSL 368
+ KRLN L ++ ++ Y++ EV+ T F I +++ + A +
Sbjct: 334 DQLIEKRLN----------LRETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRE 383
Query: 369 SPLKEEQR--LHAGQILEVILTQIRYDPM-YRNNLDVLDKIGIEEEDRMVE--------- 416
SP L Q +V + Y PM ++ L ++ ++ EE +VE
Sbjct: 384 SPFSTSASPLLSGSQHFDVPPRRQLYLPMLFKVRLLMVSRMAKPEEVLVVENDQGEVVRE 443
Query: 417 ----------YR--KDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALT 464
Y+ ++ LV L + V E ++ N +S +N+ T
Sbjct: 444 FMKDTDSINLYKNMRETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSW-KNLN------T 496
Query: 465 LLYALGE---SMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ 521
L +A+G +M EE + + + + L + K + ++A + V +Y +F++
Sbjct: 497 LCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR 556
Query: 522 EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV--------VKLLKAKLVPFIENI 573
H +++ V+ + +H + V A F+++ V++ +++PFI+ I
Sbjct: 557 AHWKFLKTVVNKLFE--FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEI 614
Query: 574 LQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLC 633
L ++ I + +EA+G +IG Q+D
Sbjct: 615 LNNINTIICDLQPQQVHT-----------FYEAVGYMIG-------AQTD---------- 646
Query: 634 QQVQTMLLDAKMLNPEE 650
Q VQ L++ ML P +
Sbjct: 647 QTVQEHLIEKYMLLPNQ 663
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 132/684 (19%), Positives = 262/684 (38%), Gaps = 137/684 (20%)
Query: 32 QIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVC 91
+KE P L + +++ LQ L V++ ++ + + I++ V ++
Sbjct: 54 HLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI- 112
Query: 92 CELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMF 151
+ S +E KL +LV ++ E+P W + F+ + S +
Sbjct: 113 ---IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT----FISDIVGASRTSESL 165
Query: 152 CR----VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVE--QIVRAWYDIVSMYRS 205
C+ +L L +E+ D+ A +KD+M C E QI + + M S
Sbjct: 166 CQNNMVILKLLSEEV--FDFSSGQITQVKAKHLKDSM---CNEFSQIFQLCQFV--MENS 218
Query: 206 SDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAV-- 263
+ + L+ + R+++WI + I I L L +P FR ++ C+ +
Sbjct: 219 QNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVP-MFRNVSLKCLTEIAG 275
Query: 264 --VSKRMDPQSKLNLLQTLQISRVFGLVS---------EDGESELVSKVAALLTGYAMEV 312
VS+ + L L +Q+ ++ L + +D E + ++ L + E
Sbjct: 276 VSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH 335
Query: 313 LDCV-KRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTT--FSI-VQFLSGYVATMKSL 368
+ KRLN A ++ ++ Y++ EV+ T F I +++ + A +
Sbjct: 336 GQLLEKRLNLREA----------LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRE 385
Query: 369 SPLKEEQR--LHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLR 426
SP L Q ++ P + L VL K+ + RM + +++LV+
Sbjct: 386 SPFSTSASPLLSGSQHFDI-------PPRRQLYLTVLSKVRLLMVSRMAK-PEEVLVVEN 437
Query: 427 SVGRVAPEV---------------------------TQVFIRNSLANAV--TFSADRNVE 457
G V E T++ + L N V T + +N+
Sbjct: 438 DQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLN 497
Query: 458 EVEAALTLLYALGE---SMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVT 514
TL +A+G +M EE + + + + L + K + ++A + V
Sbjct: 498 ------TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVG 551
Query: 515 RYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV--------VKLLKAKL 566
+Y +F++ H +++ V+ + +H + V A F+++ V++ ++
Sbjct: 552 QYPRFLRAHWKFLKTVVNKLFE--FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEV 609
Query: 567 VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS 626
+PFI+ IL ++ I + +EA+G +IG Q+D
Sbjct: 610 MPFIDEILNNINTIICDLQPQQVHT-----------FYEAVGYMIG-------AQTD--- 648
Query: 627 SLLTPLCQQVQTMLLDAKMLNPEE 650
Q VQ L++ ML P +
Sbjct: 649 -------QTVQEHLIEKYMLLPNQ 665
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 18/115 (15%)
Query: 373 EEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVA 432
E QRL G+++ +D ++ V + + IE+ R+VE++KD+++LL S+ R+A
Sbjct: 221 EXQRLVKGEVVAST-----FDEPASRHVQVAEXV-IEKAKRLVEHKKDVIILLDSITRLA 274
Query: 433 -------PEVTQVFIRNSLANAVT-----FSADRNVEEVEAALTLLYALGESMSE 475
P +V ANA+ F A RNVEE + + AL ++ S+
Sbjct: 275 RAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK 329
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 18/115 (15%)
Query: 373 EEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVA 432
E QRL G+++ +D ++ V + + IE+ R+VE++KD+++LL S+ R+A
Sbjct: 218 EXQRLVKGEVVAST-----FDEPASRHVQVAEXV-IEKAKRLVEHKKDVIILLDSITRLA 271
Query: 433 -------PEVTQVFIRNSLANAVT-----FSADRNVEEVEAALTLLYALGESMSE 475
P +V ANA+ F A RNVEE + + AL ++ S+
Sbjct: 272 RAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK 326
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 408 IEEEDRMVEYRKDLLVLLRSVGRVA-------PEVTQVFIRNSLANAVT-----FSADRN 455
IE+ R+VE++KD+++LL S+ R+A P +V ANA+ F A RN
Sbjct: 269 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARN 328
Query: 456 VEEVEAALTLLYAL---GESMSE 475
VEE + + AL G M E
Sbjct: 329 VEEGGSLTIIATALIDTGSKMDE 351
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 408 IEEEDRMVEYRKDLLVLLRSVGRVA-------PEVTQVFIRNSLANAVT-----FSADRN 455
IE+ R+VE++KD+++LL S+ R+A P +V ANA+ F A RN
Sbjct: 247 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARN 306
Query: 456 VEEVEAALTLLYAL---GESMSE 475
VEE + + AL G M E
Sbjct: 307 VEEGGSLTIIATALIDTGSKMDE 329
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 16/234 (6%)
Query: 32 QIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVC 91
Q KE P + E LS Q +F LQ L V+ ++ + E+ IR V +
Sbjct: 41 QFKEDPDAWLMVDEILSRATYEQTKFLALQVLDNVIMTRWKVLPREQCQGIRNFVVQYI- 99
Query: 92 CELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMF 151
+ SS L + + NKL VLV+++ E+P W + + + + V +
Sbjct: 100 ---LQCSSSEESLRTHRTLLNKLNLVLVSVLKQEWPHNWPTFINEIVSACHSSLSVCENN 156
Query: 152 CRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVE--QIVRAWYDIVSMYRSSDFE 209
+L L +E+ DY +AD++T + + ++ C E I + +I++ ++
Sbjct: 157 MIILRLLSEEV--FDY--SADQMT-STKTRNLKSTMCAEFSMIFQLCQEILN--SATQPS 209
Query: 210 VCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAV 263
+ L+ + R+ +WI + I I L L +PE FR + C+ +
Sbjct: 210 LIKATLETLLRFCNWIPLGYIFETPLIDTLRTRFLE--VPE-FRNVTLQCLTEI 260
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 510 LETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 569
LET+ Y ++ E+ YIP + + RG+ N +S +A+ + + + +L P+
Sbjct: 527 LETMGSYCNWLMENPAYIPPAINLLV--RGL---NSSMSAQATLGLKELCRDCQLQLKPY 581
Query: 570 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLL 629
+ +L + S+N + S D + +IG L+ + + PE+ YL ++
Sbjct: 582 ADPLLNACH------ASLNTGRMKNS---DSVRLMFSIGKLMSL--LRPEEIPKYLDIIV 630
Query: 630 TPLCQQVQTM 639
+P +++Q +
Sbjct: 631 SPCFEELQAI 640
>pdb|3UAU|A Chain A, Crystal Structure Of The Lipoprotein Jlpa
pdb|3UAU|B Chain B, Crystal Structure Of The Lipoprotein Jlpa
Length = 379
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 340 FYVMQNCEVDTTFSIVQFLSGYVATMK-SLSPLK-----EEQRLHAGQILEVILTQIRYD 393
+ ++ N ++D+T S Y+AT K +L LK EEQ L + L IL I +
Sbjct: 262 YIILNNFKIDSTLKTEGVFSSYIATAKENLQTLKAQSQNEEQALIFDKAL-AILNNITQN 320
Query: 394 PMYRNNLDV 402
Y+ NLD+
Sbjct: 321 DDYKLNLDL 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,628,196
Number of Sequences: 62578
Number of extensions: 859337
Number of successful extensions: 2560
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2544
Number of HSP's gapped (non-prelim): 22
length of query: 881
length of database: 14,973,337
effective HSP length: 107
effective length of query: 774
effective length of database: 8,277,491
effective search space: 6406778034
effective search space used: 6406778034
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)