Query 002789
Match_columns 881
No_of_seqs 240 out of 1405
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2021 Nuclear mRNA export fa 100.0 4E-122 9E-127 982.9 77.5 853 1-873 2-872 (980)
2 COG5101 CRM1 Importin beta-rel 100.0 7.1E-74 1.5E-78 600.7 59.2 768 4-844 16-886 (1053)
3 KOG2022 Nuclear transport rece 100.0 1.7E-53 3.7E-58 466.2 71.8 794 2-869 7-867 (982)
4 KOG2023 Nuclear transport rece 100.0 4.4E-53 9.6E-58 448.1 44.7 716 4-876 12-825 (885)
5 KOG2020 Nuclear transport rece 100.0 1E-47 2.2E-52 446.2 53.5 768 3-843 11-865 (1041)
6 KOG2081 Nuclear transport regu 100.0 6.6E-45 1.4E-49 385.1 45.6 542 23-635 1-557 (559)
7 KOG2171 Karyopherin (importin) 100.0 6.6E-41 1.4E-45 380.9 57.5 594 3-741 5-614 (1075)
8 KOG1241 Karyopherin (importin) 100.0 9.9E-32 2.1E-36 291.4 53.0 647 4-786 3-691 (859)
9 COG5215 KAP95 Karyopherin (imp 100.0 1.5E-25 3.2E-30 235.3 58.7 645 18-819 17-711 (858)
10 KOG1991 Nuclear transport rece 99.9 1.1E-20 2.3E-25 212.5 63.1 740 3-876 5-808 (1010)
11 KOG1992 Nuclear export recepto 99.9 3.4E-18 7.4E-23 188.0 57.1 732 1-874 4-798 (960)
12 KOG1410 Nuclear transport rece 99.9 1.5E-15 3.2E-20 163.2 60.3 786 2-859 5-929 (1082)
13 PF08389 Xpo1: Exportin 1-like 99.9 2.6E-21 5.6E-26 185.1 15.4 147 107-260 1-148 (148)
14 KOG2274 Predicted importin 9 [ 99.8 9.4E-15 2E-19 163.0 51.6 699 5-825 3-786 (1005)
15 KOG1993 Nuclear transport rece 99.8 2.2E-12 4.7E-17 142.2 57.3 581 4-675 2-656 (978)
16 COG5656 SXM1 Importin, protein 99.7 7.1E-12 1.5E-16 137.2 57.1 543 3-640 4-593 (970)
17 KOG2171 Karyopherin (importin) 99.4 1.1E-08 2.5E-13 119.0 41.0 218 526-779 386-614 (1075)
18 COG5657 CSE1 CAS/CSE protein i 99.3 1.9E-07 4.1E-12 106.1 44.8 130 18-160 16-152 (947)
19 KOG1241 Karyopherin (importin) 99.3 9.7E-06 2.1E-10 90.6 56.9 362 454-871 419-813 (859)
20 KOG2023 Nuclear transport rece 99.2 2E-07 4.4E-12 101.8 39.8 429 332-843 172-709 (885)
21 KOG1824 TATA-binding protein-i 99.2 2.3E-07 4.9E-12 105.1 39.4 679 50-873 16-726 (1233)
22 PF03810 IBN_N: Importin-beta 98.9 3.8E-09 8.3E-14 87.9 8.8 66 26-91 1-76 (77)
23 PF08767 CRM1_C: CRM1 C termin 98.9 6E-09 1.3E-13 111.3 10.8 128 727-872 65-197 (319)
24 KOG1242 Protein containing ada 98.5 0.00022 4.7E-09 79.1 30.6 178 417-615 232-447 (569)
25 KOG1824 TATA-binding protein-i 98.4 0.011 2.4E-07 68.5 44.5 480 53-636 147-660 (1233)
26 PF01602 Adaptin_N: Adaptin N 98.2 0.008 1.7E-07 70.4 38.1 120 18-158 54-179 (526)
27 KOG0915 Uncharacterized conser 98.2 0.0015 3.3E-08 78.9 29.5 182 375-582 992-1182(1702)
28 PF08506 Cse1: Cse1; InterPro 97.8 0.016 3.6E-07 63.2 26.9 170 376-555 182-370 (370)
29 COG5215 KAP95 Karyopherin (imp 97.7 0.12 2.6E-06 57.0 54.0 282 458-779 424-730 (858)
30 KOG0212 Uncharacterized conser 97.3 0.24 5.3E-06 54.7 27.5 326 460-859 61-399 (675)
31 PTZ00429 beta-adaptin; Provisi 96.9 1.7 3.8E-05 52.0 45.4 199 18-265 80-285 (746)
32 PF01602 Adaptin_N: Adaptin N 96.8 1.2 2.6E-05 52.1 29.7 128 416-559 129-259 (526)
33 KOG0915 Uncharacterized conser 96.7 0.22 4.7E-06 61.3 22.3 113 432-561 954-1069(1702)
34 KOG1059 Vesicle coat complex A 96.7 1.7 3.8E-05 49.7 35.4 240 74-391 137-381 (877)
35 PF03378 CAS_CSE1: CAS/CSE pro 96.7 0.087 1.9E-06 58.9 18.2 269 550-869 45-324 (435)
36 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.019 4.1E-07 49.4 7.4 93 458-559 2-95 (97)
37 PF03378 CAS_CSE1: CAS/CSE pro 96.1 0.53 1.1E-05 52.8 20.1 230 563-845 17-250 (435)
38 PF12755 Vac14_Fab1_bd: Vacuol 96.1 0.017 3.8E-07 49.6 6.3 53 525-583 27-79 (97)
39 KOG1943 Beta-tubulin folding c 95.7 6.9 0.00015 47.3 36.6 158 437-613 418-612 (1133)
40 KOG1242 Protein containing ada 95.5 1.2 2.6E-05 50.3 19.5 132 437-579 211-344 (569)
41 KOG0213 Splicing factor 3b, su 94.3 13 0.00029 43.0 43.4 114 482-613 794-913 (1172)
42 PF12348 CLASP_N: CLASP N term 94.1 0.76 1.6E-05 47.0 12.9 133 459-613 70-207 (228)
43 KOG0212 Uncharacterized conser 94.1 13 0.00027 41.9 31.2 99 482-584 203-303 (675)
44 COG5181 HSH155 U2 snRNP splice 93.6 16 0.00034 41.5 23.9 127 415-565 744-875 (975)
45 PF10508 Proteasom_PSMB: Prote 93.0 21 0.00046 41.2 29.7 346 423-825 60-426 (503)
46 PF13513 HEAT_EZ: HEAT-like re 92.8 0.19 4.2E-06 38.1 4.4 54 456-515 1-54 (55)
47 PRK09687 putative lyase; Provi 92.5 12 0.00026 39.4 18.9 193 5-263 26-219 (280)
48 PF12348 CLASP_N: CLASP N term 92.5 2.8 6E-05 42.8 14.0 147 540-727 62-212 (228)
49 PF02985 HEAT: HEAT repeat; I 92.0 0.11 2.3E-06 34.1 1.9 23 540-562 9-31 (31)
50 KOG1062 Vesicle coat complex A 92.0 31 0.00067 40.7 39.3 148 417-578 401-561 (866)
51 KOG1248 Uncharacterized conser 91.8 40 0.00087 41.6 61.4 95 751-872 806-901 (1176)
52 KOG1248 Uncharacterized conser 91.8 40 0.00087 41.6 49.6 325 183-615 86-423 (1176)
53 cd00020 ARM Armadillo/beta-cat 91.3 0.3 6.4E-06 43.8 4.7 95 454-560 19-120 (120)
54 KOG1059 Vesicle coat complex A 91.2 35 0.00076 39.7 25.4 81 486-577 147-227 (877)
55 KOG1991 Nuclear transport rece 91.1 43 0.00093 40.6 45.9 101 685-786 497-600 (1010)
56 KOG2274 Predicted importin 9 [ 91.0 41 0.00089 40.3 22.7 227 482-743 525-760 (1005)
57 KOG1240 Protein kinase contain 91.0 29 0.00063 42.8 21.2 91 460-562 441-539 (1431)
58 COG5181 HSH155 U2 snRNP splice 90.6 36 0.00077 38.9 21.4 96 482-584 599-700 (975)
59 PF12717 Cnd1: non-SMC mitotic 90.4 3.1 6.7E-05 40.6 11.1 76 499-580 35-113 (178)
60 PF02985 HEAT: HEAT repeat; I 90.2 0.6 1.3E-05 30.6 4.0 29 235-265 1-29 (31)
61 PLN03200 cellulose synthase-in 89.5 93 0.002 41.9 33.2 186 36-266 402-594 (2102)
62 PF10508 Proteasom_PSMB: Prote 89.1 49 0.0011 38.3 33.3 104 137-266 43-149 (503)
63 PF08767 CRM1_C: CRM1 C termin 89.1 36 0.00079 36.7 19.7 141 658-813 93-245 (319)
64 KOG1058 Vesicle coat complex C 89.0 54 0.0012 38.5 28.4 151 333-521 316-466 (948)
65 PF01603 B56: Protein phosphat 88.5 31 0.00067 38.7 18.6 211 18-265 145-370 (409)
66 PRK13800 putative oxidoreducta 88.3 80 0.0017 39.6 25.3 50 205-265 632-681 (897)
67 PTZ00429 beta-adaptin; Provisi 87.9 72 0.0016 38.7 40.0 131 417-562 156-287 (746)
68 KOG1060 Vesicle coat complex A 87.9 65 0.0014 38.1 31.3 89 417-519 159-247 (968)
69 PF13513 HEAT_EZ: HEAT-like re 87.8 0.41 8.9E-06 36.2 2.3 39 545-583 1-39 (55)
70 KOG1240 Protein kinase contain 87.7 83 0.0018 39.2 24.3 55 209-266 438-492 (1431)
71 KOG1967 DNA repair/transcripti 86.9 60 0.0013 39.1 19.6 80 540-631 52-133 (1030)
72 KOG2022 Nuclear transport rece 86.8 79 0.0017 37.9 35.5 72 189-266 506-577 (982)
73 PF08506 Cse1: Cse1; InterPro 84.5 31 0.00067 38.0 15.5 242 545-855 110-363 (370)
74 KOG1062 Vesicle coat complex A 84.5 96 0.0021 36.9 29.2 173 434-630 102-277 (866)
75 KOG0213 Splicing factor 3b, su 83.5 1E+02 0.0022 36.3 46.9 370 107-564 566-958 (1172)
76 PRK09687 putative lyase; Provi 83.3 58 0.0012 34.4 16.5 180 18-265 66-250 (280)
77 KOG2956 CLIP-associating prote 82.6 22 0.00047 39.2 12.8 172 514-734 318-491 (516)
78 PF13646 HEAT_2: HEAT repeats; 82.1 8.5 0.00018 32.1 8.2 77 453-555 11-87 (88)
79 PF14500 MMS19_N: Dos2-interac 80.8 76 0.0016 33.1 18.7 45 731-776 210-255 (262)
80 KOG1058 Vesicle coat complex C 80.3 1.3E+02 0.0029 35.5 22.5 29 422-450 117-145 (948)
81 smart00802 UME Domain in UVSB 80.2 19 0.00041 31.6 9.6 66 709-774 32-99 (107)
82 PF12460 MMS19_C: RNAPII trans 79.8 1.1E+02 0.0024 34.4 24.6 202 501-740 202-413 (415)
83 PF12460 MMS19_C: RNAPII trans 79.7 1.1E+02 0.0024 34.4 30.3 317 438-777 41-412 (415)
84 KOG1061 Vesicle coat complex A 78.6 1.5E+02 0.0032 35.2 23.9 145 417-578 137-282 (734)
85 PF08167 RIX1: rRNA processing 77.1 70 0.0015 30.7 13.5 133 435-579 21-162 (165)
86 COG5240 SEC21 Vesicle coat com 76.3 31 0.00067 39.0 11.7 128 417-564 429-561 (898)
87 smart00802 UME Domain in UVSB 75.9 13 0.00029 32.6 7.4 75 547-636 31-105 (107)
88 PF14764 SPG48: AP-5 complex s 74.6 1.1E+02 0.0025 34.2 15.7 83 376-476 257-341 (459)
89 PF00790 VHS: VHS domain; Int 74.1 75 0.0016 29.5 12.7 109 3-124 5-119 (140)
90 KOG2956 CLIP-associating prote 73.4 55 0.0012 36.3 12.5 58 207-266 419-478 (516)
91 KOG2753 Uncharacterized conser 72.6 1.4E+02 0.0029 31.8 16.4 74 524-613 102-177 (378)
92 PF10274 ParcG: Parkin co-regu 72.5 18 0.00039 35.1 7.9 90 529-631 38-128 (183)
93 KOG0166 Karyopherin (importin) 72.3 10 0.00022 42.8 7.1 93 464-564 171-270 (514)
94 PF11864 DUF3384: Domain of un 71.6 1E+02 0.0022 35.3 15.4 59 804-869 148-206 (464)
95 PF08064 UME: UME (NUC010) dom 69.5 17 0.00038 31.9 6.7 77 545-636 29-105 (107)
96 COG5096 Vesicle coat complex, 69.0 1.1E+02 0.0024 36.7 14.8 129 422-577 76-209 (757)
97 KOG1020 Sister chromatid cohes 68.8 3.5E+02 0.0076 35.0 33.2 118 742-870 1133-1258(1692)
98 PLN03200 cellulose synthase-in 68.3 4.4E+02 0.0096 36.0 59.0 226 2-267 13-263 (2102)
99 PF10274 ParcG: Parkin co-regu 67.8 24 0.00052 34.2 7.7 87 688-776 36-129 (183)
100 PF12717 Cnd1: non-SMC mitotic 67.8 13 0.00028 36.2 6.2 55 502-561 1-55 (178)
101 cd00020 ARM Armadillo/beta-cat 66.6 38 0.00082 29.7 8.7 60 206-267 19-80 (120)
102 PF12719 Cnd3: Nuclear condens 65.4 66 0.0014 34.3 11.5 133 463-615 4-146 (298)
103 PF14225 MOR2-PAG1_C: Cell mor 65.1 1.4E+02 0.003 31.2 13.2 73 190-270 187-259 (262)
104 COG5096 Vesicle coat complex, 64.4 90 0.002 37.4 12.9 123 18-161 67-196 (757)
105 PF13251 DUF4042: Domain of un 62.6 43 0.00093 32.6 8.5 74 189-266 99-175 (182)
106 PF08064 UME: UME (NUC010) dom 62.1 1E+02 0.0022 27.1 10.1 70 708-777 31-102 (107)
107 PF08161 NUC173: NUC173 domain 61.4 1.8E+02 0.0038 28.9 15.7 147 551-719 20-197 (198)
108 PF10521 DUF2454: Protein of u 61.2 1.8E+02 0.0039 30.7 13.7 70 507-582 98-176 (282)
109 KOG0166 Karyopherin (importin) 61.1 3E+02 0.0065 31.5 22.7 289 248-613 78-394 (514)
110 PF08167 RIX1: rRNA processing 59.8 79 0.0017 30.3 9.8 80 43-138 30-110 (165)
111 PF13646 HEAT_2: HEAT repeats; 59.4 19 0.0004 30.0 4.9 46 18-65 12-57 (88)
112 PF05804 KAP: Kinesin-associat 58.6 4E+02 0.0087 32.2 37.7 225 1-278 122-370 (708)
113 cd03567 VHS_GGA VHS domain fam 58.6 1.3E+02 0.0028 27.9 10.5 111 4-122 2-115 (139)
114 cd00197 VHS_ENTH_ANTH VHS, ENT 58.5 1.3E+02 0.0027 26.7 10.4 109 5-121 2-113 (115)
115 PF01603 B56: Protein phosphat 57.9 3.1E+02 0.0068 30.7 19.5 134 417-560 234-370 (409)
116 COG5240 SEC21 Vesicle coat com 57.2 3.5E+02 0.0076 31.1 19.7 69 75-159 258-331 (898)
117 PF04118 Dopey_N: Dopey, N-ter 54.6 2.3E+02 0.0049 30.3 13.0 121 708-859 113-246 (307)
118 KOG4653 Uncharacterized conser 53.8 4.9E+02 0.011 31.7 19.6 189 500-734 738-931 (982)
119 smart00288 VHS Domain present 52.7 1.9E+02 0.0041 26.5 11.4 107 5-123 2-111 (133)
120 PF05918 API5: Apoptosis inhib 51.9 4.4E+02 0.0096 30.7 19.7 243 205-494 70-317 (556)
121 PF10521 DUF2454: Protein of u 51.3 2.3E+02 0.005 29.8 12.6 75 189-266 117-204 (282)
122 KOG2256 Predicted protein invo 50.4 4.8E+02 0.01 30.6 21.5 209 504-739 257-474 (661)
123 PF04510 DUF577: Family of unk 49.7 2.4E+02 0.0053 27.0 12.8 65 81-159 3-70 (174)
124 cd03561 VHS VHS domain family; 48.1 1.4E+02 0.0029 27.4 9.0 109 5-124 2-113 (133)
125 PF01347 Vitellogenin_N: Lipop 47.6 3.7E+02 0.008 32.0 15.2 68 189-262 519-586 (618)
126 PF11865 DUF3385: Domain of un 47.3 1.3E+02 0.0028 28.6 9.0 54 548-612 104-157 (160)
127 PF14500 MMS19_N: Dos2-interac 46.3 3.6E+02 0.0079 28.0 13.2 144 453-614 10-155 (262)
128 KOG4653 Uncharacterized conser 45.1 3.6E+02 0.0079 32.7 13.3 134 427-571 794-929 (982)
129 KOG0946 ER-Golgi vesicle-tethe 43.5 5.8E+02 0.013 30.7 14.5 201 548-824 40-246 (970)
130 cd03568 VHS_STAM VHS domain fa 42.4 2.9E+02 0.0063 25.8 11.5 106 5-123 2-110 (144)
131 PF08623 TIP120: TATA-binding 41.9 37 0.00079 32.6 4.2 76 505-584 43-118 (169)
132 PRK13800 putative oxidoreducta 40.7 8.4E+02 0.018 30.6 25.1 56 5-66 624-679 (897)
133 PF08389 Xpo1: Exportin 1-like 40.3 78 0.0017 29.2 6.4 45 503-555 100-148 (148)
134 KOG2933 Uncharacterized conser 38.3 2.7E+02 0.0059 29.4 10.0 145 422-579 109-255 (334)
135 PF12054 DUF3535: Domain of un 38.2 6.4E+02 0.014 28.6 19.5 64 521-585 304-367 (441)
136 PF04826 Arm_2: Armadillo-like 36.5 5E+02 0.011 26.9 15.3 133 107-266 26-164 (254)
137 PF08623 TIP120: TATA-binding 36.4 1.2E+02 0.0026 29.1 6.7 55 802-868 39-93 (169)
138 KOG0414 Chromosome condensatio 36.1 4.8E+02 0.01 32.9 12.9 198 468-764 900-1104(1251)
139 KOG1967 DNA repair/transcripti 35.5 3.6E+02 0.0078 33.0 11.5 219 19-261 787-1020(1030)
140 cd03567 VHS_GGA VHS domain fam 35.3 1.2E+02 0.0026 28.1 6.4 46 520-567 29-74 (139)
141 KOG1992 Nuclear export recepto 35.3 9E+02 0.019 29.4 50.7 57 552-615 569-626 (960)
142 PF10363 DUF2435: Protein of u 35.2 2.8E+02 0.0061 23.6 8.5 82 40-141 5-86 (92)
143 KOG3687 Tuberin - Rap/ran-GTPa 35.0 9.7E+02 0.021 29.7 22.9 36 39-74 68-103 (1697)
144 KOG3961 Uncharacterized conser 34.9 4E+02 0.0086 26.6 9.9 104 709-817 131-240 (262)
145 PF06371 Drf_GBD: Diaphanous G 34.3 1.7E+02 0.0037 28.3 8.0 75 188-264 108-186 (187)
146 smart00638 LPD_N Lipoprotein N 33.9 8.4E+02 0.018 28.7 16.0 29 541-569 490-518 (574)
147 KOG1061 Vesicle coat complex A 33.8 9E+02 0.02 29.0 31.0 126 18-163 61-192 (734)
148 smart00638 LPD_N Lipoprotein N 33.1 8.7E+02 0.019 28.6 18.2 67 189-261 475-541 (574)
149 cd00256 VATPase_H VATPase_H, r 33.1 7.5E+02 0.016 27.8 25.3 73 191-267 101-175 (429)
150 PF11698 V-ATPase_H_C: V-ATPas 32.8 73 0.0016 28.5 4.4 72 191-266 43-116 (119)
151 PF05804 KAP: Kinesin-associat 30.3 1.1E+03 0.023 28.7 21.7 140 459-626 387-530 (708)
152 KOG0889 Histone acetyltransfer 30.1 5.4E+02 0.012 36.7 13.1 205 620-859 575-788 (3550)
153 COG5218 YCG1 Chromosome conden 29.8 6.7E+02 0.015 29.1 11.9 87 486-578 48-138 (885)
154 cd03568 VHS_STAM VHS domain fa 29.1 1.5E+02 0.0033 27.6 6.1 37 529-567 37-73 (144)
155 PF12399 BCA_ABC_TP_C: Branche 28.6 22 0.00047 21.5 0.3 17 795-811 6-22 (23)
156 PF11229 DUF3028: Protein of u 28.6 9.4E+02 0.02 27.5 12.8 175 107-311 172-354 (589)
157 PF04826 Arm_2: Armadillo-like 28.2 6.9E+02 0.015 25.9 13.3 140 3-160 13-163 (254)
158 PF12074 DUF3554: Domain of un 27.6 8.1E+02 0.017 26.5 18.0 82 499-584 33-119 (339)
159 PF13001 Ecm29: Proteasome sta 27.5 1E+03 0.022 27.6 22.9 140 483-631 272-422 (501)
160 PF09862 DUF2089: Protein of u 26.2 3.9E+02 0.0084 23.8 7.6 76 71-155 31-112 (113)
161 PF00514 Arm: Armadillo/beta-c 25.4 99 0.0021 21.3 3.2 31 232-264 10-40 (41)
162 smart00288 VHS Domain present 24.9 2.2E+02 0.0048 26.1 6.3 46 520-567 28-73 (133)
163 PF13251 DUF4042: Domain of un 24.6 4.4E+02 0.0096 25.7 8.6 27 540-566 49-75 (182)
164 PF10363 DUF2435: Protein of u 24.5 1.8E+02 0.0038 24.8 5.1 60 206-267 15-74 (92)
165 PF14668 RICTOR_V: Rapamycin-i 24.2 2.3E+02 0.0049 23.0 5.4 20 499-518 39-58 (73)
166 KOG1086 Cytosolic sorting prot 24.0 6E+02 0.013 28.1 9.9 69 4-74 9-80 (594)
167 PF08161 NUC173: NUC173 domain 23.8 7.2E+02 0.016 24.6 12.0 40 685-726 36-75 (198)
168 KOG2199 Signal transducing ada 23.3 4.8E+02 0.01 28.5 9.0 92 424-526 29-126 (462)
169 KOG2259 Uncharacterized conser 22.6 9.4E+02 0.02 28.5 11.6 140 456-630 387-526 (823)
170 cd03569 VHS_Hrs_Vps27p VHS dom 22.5 2.7E+02 0.0059 25.9 6.5 37 529-567 41-77 (142)
171 KOG1078 Vesicle coat complex C 22.2 1.4E+03 0.031 27.6 18.3 231 5-266 284-533 (865)
172 cd00197 VHS_ENTH_ANTH VHS, ENT 21.9 2.3E+02 0.005 25.0 5.8 45 523-569 31-75 (115)
173 PF09759 Atx10homo_assoc: Spin 21.7 1.2E+02 0.0026 26.4 3.6 34 527-564 30-63 (102)
174 PF11865 DUF3385: Domain of un 21.7 4.3E+02 0.0092 25.1 7.8 32 711-742 106-137 (160)
175 cd03569 VHS_Hrs_Vps27p VHS dom 21.6 6.5E+02 0.014 23.3 12.4 108 3-123 4-114 (142)
176 PF00790 VHS: VHS domain; Int 20.9 2.6E+02 0.0057 25.8 6.1 48 518-567 31-78 (140)
177 cd08050 TAF6 TATA Binding Prot 20.8 9.3E+02 0.02 26.2 11.2 146 437-610 176-335 (343)
178 cd03561 VHS VHS domain family; 20.6 2.9E+02 0.0063 25.2 6.3 29 539-567 45-73 (133)
179 COG5095 TAF6 Transcription ini 20.4 1E+03 0.022 25.1 14.3 90 331-435 227-321 (450)
180 PF12830 Nipped-B_C: Sister ch 20.0 8.2E+02 0.018 23.8 12.2 85 483-578 8-93 (187)
No 1
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-122 Score=982.94 Aligned_cols=853 Identities=36% Similarity=0.553 Sum_probs=772.6
Q ss_pred ChhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccC-ChhHHHHHHHHHHHHHHHhhccCCCHHHH
Q 002789 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTSMSSEER 79 (881)
Q Consensus 1 m~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vrffa~~~L~~~I~~~w~~l~~e~~ 79 (881)
||+++|||.++++|. +|++.|+||-++++++|.+|++|++|.+++..+ +++.+||||+|||.+.++.++++++..++
T Consensus 2 mddiEqav~a~ndp~--vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~el 79 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPR--VDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNEL 79 (980)
T ss_pred chHHHHHHHhhCCCc--ccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence 899999999999994 899999999999999999999999999999876 56999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchh--HHHHHHHHHH
Q 002789 80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMV--IDMFCRVLNS 157 (881)
Q Consensus 80 ~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~--~~~~L~iL~~ 157 (881)
+.+|.++++|+.....++.+ .+ .|.||+||++++++.++..+||..|++||.|++..++.++.. .++++++|..
T Consensus 80 qlvR~sv~swlk~qvl~ne~---~~-~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 80 QLVRFSVTSWLKFQVLGNEQ---TK-LPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHhCccc---CC-CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 99999999999987654321 12 399999999999999999999999999999999999887655 9999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC-CHHHHHHHHHHhcccccccccccccccccH
Q 002789 158 LDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSS-DFEVCTGVLDCMRRYISWIDINLIANDAFI 236 (881)
Q Consensus 158 l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~-~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l 236 (881)
|..|+.|.++.|++++..|++.+||+||++|+|++.+.|++++..|++. ++++...||+|+++|++|||+++++|+.++
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~ 235 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFL 235 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHH
Confidence 9999999999999999999999999999999999999999999999876 999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhh-hhhhccc--cCCCccHHHHHHHHHHHHHHHHHHH
Q 002789 237 PLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ-ISRVFGL--VSEDGESELVSKVAALLTGYAMEVL 313 (881)
Q Consensus 237 ~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~-l~~i~~~--~~~~~d~~~~~~l~~l~~~~~~~~~ 313 (881)
++++++++ .+++|.+||+|+.++++|+|+|.+|+.++++|+ ..+++.. ..+.+|.+|.++++++++.+|.+++
T Consensus 236 nLLy~fl~----ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~ 311 (980)
T KOG2021|consen 236 NLLYKFLN----IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELT 311 (980)
T ss_pred HHHHHHHh----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeee
Confidence 99999999 999999999999999999999999999998873 3333332 3456899999999999999999998
Q ss_pred HHHhhhcc-cch--hHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhh
Q 002789 314 DCVKRLNA-ENA--NEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQI 390 (881)
Q Consensus 314 ~~~~~~~~-~~~--~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km 390 (881)
.+++.+.. .+. ...+...+...+|++++++.|+++|++..+++||.+|...+|+.+.+++..+..+.+++.++++||
T Consensus 312 ~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqi 391 (980)
T KOG2021|consen 312 IIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQI 391 (980)
T ss_pred hhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHH
Confidence 77655432 222 124555666799999999999999999999999999999999988788888888999999999999
Q ss_pred ccCcccccccccCCC-CChHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHh
Q 002789 391 RYDPMYRNNLDVLDK-IGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYAL 469 (881)
Q Consensus 391 ~~p~~~~~~~~~~~~-~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i 469 (881)
+|++.+. ++++ .|+|+|+.|.++||+++.+++.+.+++|+.++..|.+.+..++.++...+|+.+|+|++++|.+
T Consensus 392 cydemy~----nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~l 467 (980)
T KOG2021|consen 392 CYDEMYF----NDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNL 467 (980)
T ss_pred hccHHhh----cccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 9988864 1333 5667889999999999999999999999999999999999999998899999999999999999
Q ss_pred hhcCcchhhhc------cchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCC
Q 002789 470 GESMSEEAMRT------GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHP 543 (881)
Q Consensus 470 ~e~~~~~~~~~------~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~ 543 (881)
||+++++.... ..+.+..++..++.+.++.++|+.|+..|||+++||.+||...++++|.+|.+|+++||+++.
T Consensus 468 gE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ 547 (980)
T KOG2021|consen 468 GECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNK 547 (980)
T ss_pred hhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhcccc
Confidence 99998765432 335666788888888889999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCc-ccccCCCccchhHHHHHHHHHhccCCCCccchH
Q 002789 544 NVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNY-ASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQS 622 (881)
Q Consensus 544 ~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~-~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~ 622 (881)
+.+||.||||+|.||+|..++++.||++.|++.+++++....-|.+ ++.....+++|+++||++|.+|+..+.|+|++.
T Consensus 548 ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qa 627 (980)
T KOG2021|consen 548 NENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQA 627 (980)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHH
Confidence 9999999999999999999999999999999999999964432333 344566799999999999999999888999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcC
Q 002789 623 DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF 702 (881)
Q Consensus 623 ~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~ 702 (881)
.|++.++.|++.+..-......-.+|++.+..++.++|.++++++++|||....+|.++++|..+|.+++++++.++..+
T Consensus 628 ay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f 707 (980)
T KOG2021|consen 628 AYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFF 707 (980)
T ss_pred HHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhc
Confidence 99999999999887666655554566666666777999999999999999998888899999999999999999999999
Q ss_pred CCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHh
Q 002789 703 PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFN 782 (881)
Q Consensus 703 ~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~ 782 (881)
++.+.+|+++|+++|||+.++|+.++||+|.+++.++.+.+.+|+.+|+.+++|+|++|+.++.++++++++|++.++|.
T Consensus 708 ~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfs 787 (980)
T KOG2021|consen 708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFS 787 (980)
T ss_pred cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHH
Q 002789 783 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLG 862 (881)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~ 862 (881)
.+.+...| .+|++..+.-++|++|++|+.++..+++++++.++.|+..++.++.+++++|-...||..||+++ .
T Consensus 788 vi~r~a~p----~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln--~ 861 (980)
T KOG2021|consen 788 VIERIAKP----IDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLN--V 861 (980)
T ss_pred HhcccCCC----CChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHH--H
Confidence 99987644 78888999999999999999999999999999999999899999999999999999999999999 5
Q ss_pred HHHHHhhhhHH
Q 002789 863 FFSTLHLGFSI 873 (881)
Q Consensus 863 ~~~~~~~~~~~ 873 (881)
.++++++=|.|
T Consensus 862 lcnk~v~lwgg 872 (980)
T KOG2021|consen 862 LCNKIVCLWGG 872 (980)
T ss_pred HHHHHHHhcCC
Confidence 77777776655
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.1e-74 Score=600.69 Aligned_cols=768 Identities=19% Similarity=0.247 Sum_probs=590.7
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHH
Q 002789 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIR 83 (881)
Q Consensus 4 l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr 83 (881)
+.+.|..+|.| +...++||++.|.+||+.|++|+-+..+|.+|..++.+|.|+++|+..|+++|.-+|.+.|.+||
T Consensus 16 lDkVVttfyqg----~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiR 91 (1053)
T COG5101 16 LDKVVTTFYQG----DGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIR 91 (1053)
T ss_pred HHHHHHHhcCC----CchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHH
Confidence 56788889965 77789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q 002789 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELI 163 (881)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eEv~ 163 (881)
+++++.+.+.+.+++... . .+++.||+..+++.|++++||.+||+|++++++..+.+...|++.+.+|+.|+||++
T Consensus 92 nyvv~~vI~~s~dd~v~~-~---qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvF 167 (1053)
T COG5101 92 NYVVQLVIEKSQDDKVRD-K---QKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVF 167 (1053)
T ss_pred HHHHHHHHHhcccHHHHH-H---HHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHH
Confidence 999999998764332221 1 567779999999999999999999999999999999998999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHH
Q 002789 164 SLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELI 243 (881)
Q Consensus 164 ~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L 243 (881)
++.. ..+++.|...+|+.|... +++||.+|.++|+. +.++.++.++|+.+.+|+.|||+++++.+++++++.+.+
T Consensus 168 dfSa--eqmTq~k~~~LkNqm~~E-F~qIF~lc~qiLE~--~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f 242 (1053)
T COG5101 168 DFSA--EQMTQVKKRLLKNQMKIE-FPQIFGLCKQILEY--SRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHF 242 (1053)
T ss_pred hccH--HHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 9853 367889999999999998 99999999999996 568889999999999999999999999999999999766
Q ss_pred hhCCCChhHHHHHHHHHHHHHhcCCChhh---h-HHHHHHhh----------------hhhhccccCCCccHHHHHHHHH
Q 002789 244 LADGLPEQFRGAAVGCVLAVVSKRMDPQS---K-LNLLQTLQ----------------ISRVFGLVSEDGESELVSKVAA 303 (881)
Q Consensus 244 ~~~~~~~~~~~~a~~~l~~ii~~~~~~~~---k-~~ll~~l~----------------l~~i~~~~~~~~d~~~~~~l~~ 303 (881)
. ..|..|.++++||.||++.+..|.+ | -.+.-+.+ +.++++. .+..|..|..++|.
T Consensus 243 ~---s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~-~~~neq~Fvq~LA~ 318 (1053)
T COG5101 243 N---SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGG-MDKNEQIFVQKLAQ 318 (1053)
T ss_pred c---cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcc-cChhHHHHHHHHHH
Confidence 6 3899999999999999998854432 1 11111111 1112221 23456789999999
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccC--------C-----C
Q 002789 304 LLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL--------S-----P 370 (881)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~--------~-----~ 370 (881)
+++++...++.. +++.+ +.+.++...-.++..+..+.+ ++|..+++||+.+.-+ | |
T Consensus 319 fL~s~~~~~~~l---LE~~e-------~~e~llnah~YLiqiSrIner-eiFkt~leyW~klVadLy~E~q~lp~tem~P 387 (1053)
T COG5101 319 FLSSLYEVYISL---LEARE-------MAENLLNAHGYLIQISRINER-EIFKTALEYWNKLVADLYSEFQRLPATEMSP 387 (1053)
T ss_pred HHHHHHHHHHHH---hcChh-------HHHHHHHHHHHhhhhhhccHH-HHHHHHHHHHHHHHHHHHHHHHhCcccccCc
Confidence 999998766543 33322 222333333334444445555 7999999999886421 1 1
Q ss_pred C-------------c----------HHHHHHHHHHHHHHHHhhccCcccccccccCCCCChHHH-----HHHHHHHHHHH
Q 002789 371 L-------------K----------EEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEE-----DRMVEYRKDLL 422 (881)
Q Consensus 371 l-------------~----------~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~-----~~f~~~R~~~~ 422 (881)
+ + ..+.+++++|.-+++++|.+||+ ++++++|+||--+ .+--++.|.++
T Consensus 388 li~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEE---VliVendegEivRefvketDtI~lYksmR 464 (1053)
T COG5101 388 LIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEE---VLIVENDEGEIVREFVKETDTIELYKSMR 464 (1053)
T ss_pred chhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcce---EEEEECCCcHHHHHHhccccHhHHHHHHh
Confidence 1 0 12467899999999999999988 4556777776222 12235677899
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhc---CcchhhhccchHHHHHHHHHH--hCCC
Q 002789 423 VLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGES---MSEEAMRTGAGHLSELVPMLL--QTKL 497 (881)
Q Consensus 423 ~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~---~~~~~~~~~~~~l~~ll~~l~--~~~~ 497 (881)
+++.+++++...++-.++..++...+.+ ..=+|+.+- .+|||+|+. +.+.. +..++..++..|+ |.+.
T Consensus 465 evLvyLthL~v~Dte~~mi~Klarq~dg-~EWsw~nlN---tLcWAIGSISGamsE~~---EkrF~VnviKdLL~LcemK 537 (1053)
T COG5101 465 EVLVYLTHLIVDDTEKYMIGKLARQLDG-KEWSWNNLN---TLCWAIGSISGAMSEVN---EKRFFVNVIKDLLALCEMK 537 (1053)
T ss_pred hHHHHHhhhhhhhHHHHHHHHHHHHhcC-CccchhhHh---HHHHHHhcccchhhhHH---HHHHHHHHHHHHHHHHHHh
Confidence 9999999999988989999999988875 112366554 789999984 33333 5788888888876 4556
Q ss_pred CCCCChhH-HHHHHHHHHHhHHHHhhcCCChHHH---HHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch------
Q 002789 498 PCHSNRLV-ALVYLETVTRYMKFIQEHTQYIPVV---LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV------ 567 (881)
Q Consensus 498 ~~~~~p~v-~~~~~~~igry~~~l~~~~~~L~~v---L~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~------ 567 (881)
++.++++| ++.+|+++|||++|++.|+.||++| |+.| ||+.+++|++|||+.|.+++++|+.+++
T Consensus 538 rgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEF-----MhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~ge 612 (1053)
T COG5101 538 RGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEF-----MHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGE 612 (1053)
T ss_pred hcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHH-----HhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCC
Confidence 67888887 8899999999999999999999999 6666 8999999999999999999999998875
Q ss_pred --hhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhh
Q 002789 568 --PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKM 645 (881)
Q Consensus 568 --p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~ 645 (881)
||+..|+..++...... .+.+...+|||+|.+|+..+ ....+..++-.+|.-+.+.|.+...++..
T Consensus 613 sEpFI~~Iirnl~ktT~dL-----------~pqQ~htfYeAcg~vIse~p-~~~~~~rlv~dlm~Lpn~aw~niv~qa~~ 680 (1053)
T COG5101 613 SEPFIVYIIRNLPKTTGDL-----------EPQQKHTFYEACGMVISEVP-KTRDYKRLVLDLMDLPNSAWLNIVIQADE 680 (1053)
T ss_pred CCcHHHHHHHhhhhhcccC-----------ChHHHhHHHHHHhHHHhccc-hhhHHHHHHHHHHHhhHHHHHHHHHHhhh
Confidence 89999998887655543 57888899999999999876 33456678888889899999887766543
Q ss_pred ----cCCchhhhHHHH-HHHHHHHHHHhhcccCCCCCCCCcccHHHHHH--HHHHHHHHH--h-----hcCCCChhHh--
Q 002789 646 ----LNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFK--QTLDVLLQI--L-----VVFPKVEPLR-- 709 (881)
Q Consensus 646 ----~~~~e~~~~~~~-~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~--~~~~~~~~~--l-----~~~~~~~~ir-- 709 (881)
..|++..+..+. +......+.++|.+|.|+.+.. .|..+|. -+...+... . .+-+..+.+|
T Consensus 681 n~~~L~d~~tvki~an~~ktnVa~ctslg~~fyPq~~~~---y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrti 757 (1053)
T COG5101 681 NINRLSDTMTVKIDANKMKTNVAKCTSLGYRFYPQTCSS---YCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTI 757 (1053)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhhcccccchHHHHH---HHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHH
Confidence 245666665566 7888889999999999876221 1111111 111111111 1 1222222333
Q ss_pred -hHHHHHHHHHHH---hhCccccccHHHHHHHHHccC-----ChhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHH
Q 002789 710 -CKVTSFIHRMVD---TLGASVFPYLPKALEQLLAES-----EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780 (881)
Q Consensus 710 -~~~~~~~~~~v~---~lg~~~~p~lp~~~~~ll~~~-----~~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~ 780 (881)
..+..++..-+. -+......++|.+++.++.+| +.++ +++|++.+.+|.+.++-+..-...++...+..+
T Consensus 758 KkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~DY~nNvPdard-aevLnl~ttiV~~v~~~i~~~~~l~l~svf~ct 836 (1053)
T COG5101 758 KKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFDYKNNVPDARD-AEVLNLGTTIVRNVESVIYLQRELFLISVFICT 836 (1053)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcccc-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Confidence 233333322221 133344577888889888877 3567 899999999999999877766667777888888
Q ss_pred HhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHH
Q 002789 781 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLY 844 (881)
Q Consensus 781 ~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~ 844 (881)
..++..++ + ++||+|.+||.|+..+..++|+++|-- .+|.+..+..++++
T Consensus 837 l~mi~kdf---~---------EypEhr~~f~~Ll~~inl~sF~afl~~--p~p~Fklv~nti~w 886 (1053)
T COG5101 837 LIMIVKDF---D---------EYPEHRKNFLLLLENINLFSFSAFLSF--PQPSFKLVYNTILW 886 (1053)
T ss_pred HHHHHhhh---h---------hChHHHHHHHHHHHHHHHHhHHHHHcC--CcHHHHHHHHHHHH
Confidence 89998877 3 899999999999999999999998732 35578888888884
No 3
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-53 Score=466.22 Aligned_cols=794 Identities=15% Similarity=0.207 Sum_probs=597.5
Q ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+.++++|..+|.+ .+++.+..+++||++.|.+|++|.+.+++++..++.++|||||.+|..+|+++|++.+++++..
T Consensus 7 a~v~~~v~~lY~~---~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q 83 (982)
T KOG2022|consen 7 ATVEELVTTLYSH---RNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQ 83 (982)
T ss_pred HHHHHHHHHHhcC---CChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence 4588999999977 5889999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC--c-----hhHHHHHHH
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG--S-----MVIDMFCRV 154 (881)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~--~-----~~~~~~L~i 154 (881)
|+..++..+.... +. |+.|-||+|..++.++.+.-|+.||+.+.+++.+++.+ + -.|...|+.
T Consensus 84 L~~klf~~l~~~~---------g~-~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~ 153 (982)
T KOG2022|consen 84 LKLKLFLILSRFA---------GG-PKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEV 153 (982)
T ss_pred HHHHHHHHHHHhc---------CC-chhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHH
Confidence 9999999998772 12 88999999999999999999999999999999998762 2 357889999
Q ss_pred HHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHH-----HHHHHHHHhccccccccccc
Q 002789 155 LNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFE-----VCTGVLDCMRRYISWIDINL 229 (881)
Q Consensus 155 L~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~-----l~~~~L~~l~~~i~wi~~~~ 229 (881)
|..+|+|.... .....|+..++..+... ...++.++..+++...+..+. ....+++|++.|+..+....
T Consensus 154 Ls~~p~e~q~~-----~l~~t~~~~l~~eLak~-~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~ 227 (982)
T KOG2022|consen 154 LSFMPAEFQHV-----TLPLTRRSVLRGELAKF-SENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG 227 (982)
T ss_pred hccCcHhhhhc-----cchhHHHHHHHHHHHHH-HHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 99999998654 45677888899988887 777777777777764333333 34679999999998877765
Q ss_pred ccccccHHHHHHHHhhCCCChhHHHHHHHHH------------HHHHhcCCChhh------hHHHHHHh-h-hhhh---c
Q 002789 230 IANDAFIPLLFELILADGLPEQFRGAAVGCV------------LAVVSKRMDPQS------KLNLLQTL-Q-ISRV---F 286 (881)
Q Consensus 230 ~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l------------~~ii~~~~~~~~------k~~ll~~l-~-l~~i---~ 286 (881)
.....+++.++..+..+ ......++-+|+ .+.+.....|+. -..++.+. + +.++ +
T Consensus 228 ~~c~~i~~~ll~~l~~s--~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 MDCDQITQVLLDVLGQS--TEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred ccHHHHHHHHHHHHhhh--ccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 55456777777666521 111122222232 222221111111 01112211 1 1111 1
Q ss_pred cccCCCcc--HHHHHHHHHHHHHHHHHHHHH-HhhhcccchhHHHHHHHHHHHHHHHhhhccC-CcchhhhHHHHHHHHH
Q 002789 287 GLVSEDGE--SELVSKVAALLTGYAMEVLDC-VKRLNAENANEASKKLLNEVLPSVFYVMQNC-EVDTTFSIVQFLSGYV 362 (881)
Q Consensus 287 ~~~~~~~d--~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-~~~v~~~~~~~~~~~w 362 (881)
... .+.| ++-.-.+..+.+..++.++.. .+.+.++ ........++..++.+++.| .+.+.+.+....++||
T Consensus 306 ~~~-e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g----~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW 380 (982)
T KOG2022|consen 306 QEE-ENADASEEEIVTFLAITVSSVENHLPTLIDCAAQG----EQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFW 380 (982)
T ss_pred HHH-hCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhc----chHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHH
Confidence 111 1222 444456777778888766544 2322221 12235567888899999977 6778878888899999
Q ss_pred HHhccCC---------CCcHHHH-HHHHHHHHHHHHhhccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 002789 363 ATMKSLS---------PLKEEQR-LHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVA 432 (881)
Q Consensus 363 ~~l~~~~---------~l~~~~~-~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~ 432 (881)
..++++- .-...++ +++.+|++++++||.+|.+.. ...|..|+.+.|+.||++++|++.+++.+.
T Consensus 381 ~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~-----~~~W~S~s~e~F~~YR~diSD~~~~~Y~il 455 (982)
T KOG2022|consen 381 YTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEI-----WLSWSSDSREQFESYRKDISDLLMSSYSIL 455 (982)
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHH-----hccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998641 1122344 899999999999999998865 233445678899999999999999999998
Q ss_pred hhhHHHHHHHHHHHhhccc--CCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHH
Q 002789 433 PEVTQVFIRNSLANAVTFS--ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYL 510 (881)
Q Consensus 433 ~~~~l~~i~~~l~~~l~~~--~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~ 510 (881)
++..+.++.+.+.+.+... ++..|++.|+++|.+..+++.+.++. ..-++.++........+ .++|....+..
T Consensus 456 gd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~----~~~i~rl~~~~asik~S-~~n~ql~~Tss 530 (982)
T KOG2022|consen 456 GDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE----STWIPRLFETSASIKLS-APNPQLLSTSS 530 (982)
T ss_pred hHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch----hHHHHHHHHhccccccc-cCChhHHHHHH
Confidence 8999999999999988642 34569999999999999999998774 67788888876654443 34888888899
Q ss_pred HHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcc
Q 002789 511 ETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYA 590 (881)
Q Consensus 511 ~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~ 590 (881)
+++|.|+.|+..||.+|.+.|+.++ +|++++. -...|...+.+||++|+.+|.||.++++......+....
T Consensus 531 ~~igs~s~~l~e~P~~ln~sl~~L~--~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~----- 601 (982)
T KOG2022|consen 531 DLIGSLSNWLGEHPMYLNPSLPLLF--QGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSN----- 601 (982)
T ss_pred HHHHHHHHHHhcCCcccCchHHHHH--HHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccc-----
Confidence 9999999999999999999999988 6777553 456677889999999999999999999999998887642
Q ss_pred cccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhc
Q 002789 591 SKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSK 670 (881)
Q Consensus 591 ~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k 670 (881)
....++..++.+||.+++... +|++..|+.+++.|++++++.++.... .+.+ ....+.+.+.+++++..
T Consensus 602 ----~~~S~~~klm~sIGyvls~~~--pEe~~kyl~~lin~il~qle~~l~~~i--~~~e---~~l~~~~~l~~iS~Lft 670 (982)
T KOG2022|consen 602 ----AKDSDRLKLMKSIGYVLSRLK--PEEIPKYLMKLINPILSQLEINLAPGI--DDQE---NHLRIAFQLNTISALFT 670 (982)
T ss_pred ----cCchHHHHHHHHHHHHHHhcc--HHhHHHHHHHHHHHHHHHHHHhhcCCC--CCHH---HHHHHHHHHHHHHHHHh
Confidence 356789999999999999864 789999999999999999998865422 2222 22235556666666655
Q ss_pred ccCCCCC------------CCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccc-cccHHHHHHH
Q 002789 671 GFNERLV------------TSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV-FPYLPKALEQ 737 (881)
Q Consensus 671 ~f~~~~~------------~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~-~p~lp~~~~~ 737 (881)
....... +.++.++.++..++++++..+++.|.+...+.++.|..+..-+..+++.+ .|++|.+++.
T Consensus 671 SL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~F 750 (982)
T KOG2022|consen 671 SLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPF 750 (982)
T ss_pred ccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence 4432210 12233788899999999999999998888888889988888888888888 7999999998
Q ss_pred HHccCChhhHHHHHHHHHHHHHHhhcc--hHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 002789 738 LLAESEPKEMAGFLVLLNQLICKFNTL--VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLH 815 (881)
Q Consensus 738 ll~~~~~~~~~~~L~l~~~li~~~~~~--~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~ 815 (881)
+.. +.+....-.+.+..+.+..+-.. ..|.+.+.+...+++.+-++.+... +++||+...|+.|+.
T Consensus 751 i~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f-----------~n~~Di~~~~~~~v~ 818 (982)
T KOG2022|consen 751 IVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPF-----------SNQPDIYLQLIGFVR 818 (982)
T ss_pred HHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCC-----------CCCchHHHHHHHHHH
Confidence 888 54433355566666655544432 4577778888888888888876542 268999999999999
Q ss_pred HHHhcCCccccccCCCcCChHHHHH-HHHHhhcCCCCccchhHhhHHHHHHHHhh
Q 002789 816 VIATHDLSSVFLSPKSRGYLDPIMQ-LLLYTSCNHKDYLVRKVCYFLGFFSTLHL 869 (881)
Q Consensus 816 ~i~~~~~~~~l~s~~~~~~l~~~l~-~~~~~~~~~~d~~~~k~~~~~~~~~~~~~ 869 (881)
.++++. +.++... .+.+..++. +.+. ....|++.+.|++. +|++.+..
T Consensus 819 ~ilkk~-P~~~~~~--~~~~ts~i~~~a~~-ll~~pE~~~i~aa~--qF~t~~~~ 867 (982)
T KOG2022|consen 819 QILKKI-PKFLEPS--MLAFTSLILICAFI-LLNSPEPTTIRAAS--QFLTALAT 867 (982)
T ss_pred HHHHhC-cCccccc--hHHHHHHHHHHHHH-hcCCCccHHHHHHH--HHHHHHHh
Confidence 999998 4455332 235555444 5553 46779999999999 68887653
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-53 Score=448.12 Aligned_cols=716 Identities=17% Similarity=0.204 Sum_probs=528.8
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCC--hhHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 002789 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCN--IVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 4 l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~--~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+.|.++.+-+. .++|++.|+.++..|++|+..|+.-++...+|.+.+ +..+|-.|..+||+.++-+|++++++....
T Consensus 12 l~ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 12 LQQLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 44444444332 235899999999999999999999999999998654 488999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHH
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDD 160 (881)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~e 160 (881)
+|..++..+... .+.||+..+.+++.|+.+.+-+.||+.++.+.+++.+.. ++++..+..|..++|
T Consensus 91 iKs~~l~~lgd~-------------~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 91 IKSECLHGLGDA-------------SPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHHHHHhhccCc-------------hHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHh
Confidence 999998877643 569999999999999999999999999999999998754 789999999999999
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHH
Q 002789 161 ELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF 240 (881)
Q Consensus 161 Ev~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~ 240 (881)
+...... .+-.++..+.| +|+.++++ .+.+|.++..++.|++.|+--..-+
T Consensus 158 Dsa~~ld------s~~~~rpl~~m----ipkfl~f~-------~h~spkiRs~A~~cvNq~i~~~~qa------------ 208 (885)
T KOG2023|consen 158 DSAQFLD------SDVLTRPLNIM----IPKFLQFF-------KHPSPKIRSHAVGCVNQFIIIQTQA------------ 208 (885)
T ss_pred hhHHHHh------hhcccCchHHh----HHHHHHHH-------hCCChhHHHHHHhhhhheeecCcHH------------
Confidence 8865411 11111112222 55554443 3568999999999999876322111
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhhhhhhccccCCCccHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002789 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLN 320 (881)
Q Consensus 241 ~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~~~~~~ 320 (881)
....++-+.+. ++. +++|+|++.++++|+-+.-+.+.. .+
T Consensus 209 ------------l~~~iD~Fle~---------------------lFa-lanD~~~eVRk~vC~alv~Llevr---~d--- 248 (885)
T KOG2023|consen 209 ------------LYVHIDKFLEI---------------------LFA-LANDEDPEVRKNVCRALVFLLEVR---PD--- 248 (885)
T ss_pred ------------HHHHHHHHHHH---------------------HHH-HccCCCHHHHHHHHHHHHHHHHhc---HH---
Confidence 11112222111 111 245677777777776554443211 11
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhccCccccccc
Q 002789 321 AENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNL 400 (881)
Q Consensus 321 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~ 400 (881)
..++++..++++||+.+...+.+|+.++- +||..+.+.+-..+...+++.+|+++++.+|+|.+++.--+
T Consensus 249 ------kl~phl~~IveyML~~tqd~dE~VALEAC----EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 249 ------KLVPHLDNIVEYMLQRTQDVDENVALEAC----EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred ------hcccchHHHHHHHHHHccCcchhHHHHHH----HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHh
Confidence 23347889999999999888777765543 68888887664445678999999999999999966532000
Q ss_pred c-------c-------------------------CCC-CCh-HHHHHH--HHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 002789 401 D-------V-------------------------LDK-IGI-EEEDRM--VEYRKDLLVLLRSVGRVAPEVTQVFIRNSL 444 (881)
Q Consensus 401 ~-------~-------------------------~~~-~~e-ed~~~f--~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l 444 (881)
. + +|+ ||| ||++.| ++.||+.+..++.++++.++.+++++++.+
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlL 398 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLL 398 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0 0 000 111 122223 469999999999999999999999999999
Q ss_pred HHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhc-
Q 002789 445 ANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH- 523 (881)
Q Consensus 445 ~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~- 523 (881)
++.+.+ ..|-.+||++.+++|+||||.... .+++|+++..|++ ...+..|.||...||+++||++|....
T Consensus 399 k~~L~~---~~W~vrEagvLAlGAIAEGcM~g~----~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~ 469 (885)
T KOG2023|consen 399 KEHLSS---EEWKVREAGVLALGAIAEGCMQGF----VPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDS 469 (885)
T ss_pred HHHcCc---chhhhhhhhHHHHHHHHHHHhhhc----ccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCC
Confidence 999875 789999999999999999999886 7889999999886 456778899988889999999999874
Q ss_pred -CCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhH
Q 002789 524 -TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 602 (881)
Q Consensus 524 -~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~ 602 (881)
.+|+.++|..++ +.+-++|++||++||.+|..+-++....++||++.|++++-..+..+. .++.+.
T Consensus 470 ~~~~f~pvL~~ll--~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ-----------~KNLlI 536 (885)
T KOG2023|consen 470 RDEYFKPVLEGLL--RRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQ-----------KKNLLI 536 (885)
T ss_pred hHhhhHHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHh-----------hcceeh
Confidence 369999999998 667889999999999999999999999999999999999999999874 778899
Q ss_pred HHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHHHhhcccCCCCCCCCc
Q 002789 603 IFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSR 681 (881)
Q Consensus 603 l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~l~k~f~~~~~~~~~ 681 (881)
+|+|||++..+.+ ..-.+.+|++.+|+|++++|+.+.+. | . .+.. ++|+..+.++++.||.|+.
T Consensus 537 LYDAIgtlAdsvg-~~Ln~~~YiqiLmPPLi~KW~~lsd~-----D---K-dLfPLLEClSsia~AL~~gF~P~~----- 601 (885)
T KOG2023|consen 537 LYDAIGTLADSVG-HALNKPAYIQILMPPLIEKWELLSDS-----D---K-DLFPLLECLSSIASALGVGFLPYA----- 601 (885)
T ss_pred HHHHHHHHHHHHH-HhcCcHHHHHHhccHHHHHHHhcCcc-----c---c-hHHHHHHHHHHHHHHHhccccccC-----
Confidence 9999999998775 34467899999999999999987432 2 2 2333 8899999999999999987
Q ss_pred ccHHHHHHHHHHHHHHHhh----------------------------------------------------cC-CCChhH
Q 002789 682 PAIGLMFKQTLDVLLQILV----------------------------------------------------VF-PKVEPL 708 (881)
Q Consensus 682 ~~~~~if~~~~~~~~~~l~----------------------------------------------------~~-~~~~~i 708 (881)
.++|++++.++..+++ .+ ....+|
T Consensus 602 ---~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peV 678 (885)
T KOG2023|consen 602 ---QPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEV 678 (885)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHH
Confidence 7888887777763310 00 123567
Q ss_pred hhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChh---hHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhcc
Q 002789 709 RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK---EMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIP 785 (881)
Q Consensus 709 r~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~---~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~ 785 (881)
|+....++.-+....-+.+.|++..++..+....+.. -.....+-+|.+..++|.++++++..++.+++ .+++
T Consensus 679 RQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~----~iin 754 (885)
T KOG2023|consen 679 RQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLI----TIIN 754 (885)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH----HHhc
Confidence 8777777777777777888899999888888766543 23456788999999999998888776666555 6676
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHHHHH
Q 002789 786 RDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFS 865 (881)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~ 865 (881)
+..+ ...+.+.----++++...|+..+ .|+++.++.-=........|-.-+-.||. ||+.
T Consensus 755 ~~~~-------------~~tllENtAITIGrLg~~~Pe~v------Ap~l~~f~~pWc~sl~~i~DneEK~sAFr-G~c~ 814 (885)
T KOG2023|consen 755 RQNT-------------PKTLLENTAITIGRLGYICPEEV------APHLDSFMRPWCTSLRNIDDNEEKESAFR-GLCN 814 (885)
T ss_pred ccCc-------------hHHHHHhhhhhhhhhhccCHHhc------chhHHHHHHHHHHHhcccccchhHHHHHH-HHHH
Confidence 5441 12344444444555555553322 34566655543322234455555556664 6666
Q ss_pred HHhhhhHHhhh
Q 002789 866 TLHLGFSILIS 876 (881)
Q Consensus 866 ~~~~~~~~~~~ 876 (881)
-+-..++|..+
T Consensus 815 mi~vNp~~vv~ 825 (885)
T KOG2023|consen 815 MINVNPSGVVS 825 (885)
T ss_pred heeeCchhhhh
Confidence 66666665543
No 5
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-47 Score=446.25 Aligned_cols=768 Identities=17% Similarity=0.261 Sum_probs=543.9
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Q 002789 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (881)
Q Consensus 3 ~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~l 82 (881)
++.+|+...++|. ++++.|.+|+++|++||..|++|..|..+|..++++++||||+++|++.|+++|+.+|.++|.++
T Consensus 11 ~lldavv~~~~~~--~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~gl 88 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPE--GSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGL 88 (1041)
T ss_pred HHHHhHHHHhCcc--cchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHH
Confidence 5788998999884 68899999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHh
Q 002789 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDEL 162 (881)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eEv 162 (881)
|+++++.+...+.+.+ . ... .+++++|++.++++++|++||+.||+|++++.+.++.++..+++.+.|++.|.||+
T Consensus 89 k~~v~~~~~~~~~~~~-~--~~~-~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdv 164 (1041)
T KOG2020|consen 89 KNYVLTLIIEASPDED-V--SET-EKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEV 164 (1041)
T ss_pred HHHHHHHHhhcCCcHh-H--HHH-HHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 9999998886531100 0 001 67899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHH
Q 002789 163 ISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFEL 242 (881)
Q Consensus 163 ~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~ 242 (881)
+++... ..++.|...++..+... +..++.+|..+..+ ..+. +..+++.++..|++||++++++..+.+..++..
T Consensus 165 f~~ss~--~~~q~~~~il~~~~~~~-f~~i~~l~~~~~~~--a~~~-~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~ 238 (1041)
T KOG2020|consen 165 FDFSSS--ELTQQKIIILKNLLENE-FQQIFTLCSYIKEK--ANSE-LLSATLETLLRFLEWIPLGYIFETNILELLLNK 238 (1041)
T ss_pred hcccch--HHHhhhHHHHHHHhhHH-HHHHHHHHHHHHhh--hhhH-HHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHh
Confidence 987432 45566666666666665 99999999987775 2334 999999999999999999999998877777644
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhcCCCh-hhh-HHHHHH-----------hhhhhhccccCCCccH-HHHHHHHHHHHHH
Q 002789 243 ILADGLPEQFRGAAVGCVLAVVSKRMDP-QSK-LNLLQT-----------LQISRVFGLVSEDGES-ELVSKVAALLTGY 308 (881)
Q Consensus 243 L~~~~~~~~~~~~a~~~l~~ii~~~~~~-~~k-~~ll~~-----------l~l~~i~~~~~~~~d~-~~~~~l~~l~~~~ 308 (881)
+. ..+.+|..|++||.++++++... +.+ ..+.+. +++.+++.. ..+.|. .|.++++.+++.+
T Consensus 239 ~l---n~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~-~~~~dq~~fi~~l~~~l~~f 314 (1041)
T KOG2020|consen 239 FL---NAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYSS-LSDEDQDSFIEKLAQFLSLF 314 (1041)
T ss_pred cc---chHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhhc-ccHhHHHHHHHHHHHHHHHH
Confidence 43 28999999999999999986421 111 122221 111222221 233444 8999999999999
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccC-----CCC------------
Q 002789 309 AMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL-----SPL------------ 371 (881)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~-----~~l------------ 371 (881)
+..++..++ ... .+....+..+..+++....+ .+ +++..|+++|..+... +++
T Consensus 315 ~~~~~~lle---~~~--~~~~~~~~~~~~li~i~~~~----~s-e~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~ 384 (1041)
T KOG2020|consen 315 FEQHIALLE---SSL--SQRPVLLEALLELILISTIE----PS-EIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISD 384 (1041)
T ss_pred HHHHHHHHc---Cch--hhhhHHHHHHHHHHHHhccC----ch-hHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 998876542 211 01112233333333333333 33 6677799999886543 111
Q ss_pred -------cHHHHHHHHHHHHHHHHhhccCcccccccccCCCCChHHH-----HHHHHHHHHHHHHHHHHHhcChhhHHHH
Q 002789 372 -------KEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEE-----DRMVEYRKDLLVLLRSVGRVAPEVTQVF 439 (881)
Q Consensus 372 -------~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~-----~~f~~~R~~~~~~l~~i~~~~~~~~l~~ 439 (881)
.+.+..++.++.-..+.+|..|++. +.+.++.++... .+|..+-+.+++.+.+.+.++..++-.+
T Consensus 385 ~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~v---live~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~ 461 (1041)
T KOG2020|consen 385 YSRIDFRKSIYQEFLSKLRLLRLERMAKPEEV---LIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKI 461 (1041)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhcCchhe---eEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhh
Confidence 1234578889998999999999884 333444444211 2355566778899999999988888888
Q ss_pred HHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHH--hCCCCCCCChhH-HHHHHHHHHHh
Q 002789 440 IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLL--QTKLPCHSNRLV-ALVYLETVTRY 516 (881)
Q Consensus 440 i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~--~~~~~~~~~p~v-~~~~~~~igry 516 (881)
+...+...+.+ .-| ..++-...||++|.+...-....+..++..++..++ ++...+.++.+| ....++++|+|
T Consensus 462 ~~~kl~~~l~~---~~~-~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~ 537 (1041)
T KOG2020|consen 462 MTEKLAIQLDG---DEW-SLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQY 537 (1041)
T ss_pred hhHhHHHHhhH---HHH-hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhccc
Confidence 88877776654 233 255666889999965432111113455555554444 233344556676 78899999999
Q ss_pred HHHHhhcCCChHHH---HHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcc--------hhhHHHHHHHhhhhhhccc
Q 002789 517 MKFIQEHTQYIPVV---LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--------VPFIENILQSLQDTIARFT 585 (881)
Q Consensus 517 ~~~l~~~~~~L~~v---L~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l--------~p~~~~il~~l~~~l~~~~ 585 (881)
++|+..|+.+|+++ |+.| |+..+.+|+++||+.|.+++..|+.++ .||++.++..+..++...
T Consensus 538 p~Fl~~h~~~Lkt~~~~L~ef-----mhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l- 611 (1041)
T KOG2020|consen 538 PRFLKAHWKFLKTVVHKLFEF-----MHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDL- 611 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCc-
Confidence 99999999999966 6666 777888899999999999999999863 278888888877666543
Q ss_pred ccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhc----CCchhhhHHHH-HHH
Q 002789 586 SMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKML----NPEESTAKFAN-IQQ 660 (881)
Q Consensus 586 ~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~----~~~e~~~~~~~-~~~ 660 (881)
.+.++...||++|.+++... ++..+.++.+..+.-....|.+.+.+.... .+.+.++.+.. +..
T Consensus 612 ----------~~~q~~~~~~al~~~V~~~~-~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~ 680 (1041)
T KOG2020|consen 612 ----------QPQQRHTFYEALGLMVSAEI-DPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKT 680 (1041)
T ss_pred ----------hHHHHHHHHHHHHHHHHHhC-CHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHh
Confidence 47788899999997777644 667788999999998899999977665532 23344444444 666
Q ss_pred HHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhc----------CC-CChhH---hhHHHHHHHHHHHhhCc-
Q 002789 661 IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVV----------FP-KVEPL---RCKVTSFIHRMVDTLGA- 725 (881)
Q Consensus 661 ~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~----------~~-~~~~i---r~~~~~~~~~~v~~lg~- 725 (881)
+..++.++|.+|.++. .-++.+...++...... .. ..+.+ |...+....-+....+.
T Consensus 681 ~~~~~~sl~~~f~~~~--------~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~ 752 (1041)
T KOG2020|consen 681 NSRALTSLGSTFVPQL--------GKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKS 752 (1041)
T ss_pred HHHHHHhcCccccccc--------ccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcc
Confidence 6677788888887765 34445555554432110 00 11111 21111111111111111
Q ss_pred -----cccccHHHHHHHHHccC-----ChhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCC
Q 002789 726 -----SVFPYLPKALEQLLAES-----EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGT 795 (881)
Q Consensus 726 -----~~~p~lp~~~~~ll~~~-----~~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~ 795 (881)
-..-++|..+...+-+| +.++ ...+.+-..++.++|.-+...+..++..++.+.+.+++.+. +
T Consensus 753 ~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~-~~vl~l~~~iv~~Lg~~i~~~~~~i~~~v~~c~l~m~~~d~---q--- 825 (1041)
T KOG2020|consen 753 EQRDLYLLMLVPPLLDAVLFDYLDNVPDYRE-NEVLSLNATIVPKLGEFIPAELPLINIAVLECTLEMINKDF---Q--- 825 (1041)
T ss_pred cchhHHHHhhhhHHHHHHHHHHHccCcchhc-chHHHhhhhhhhhhhhHhhhhccHHHHHHHhhhhhcccccc---c---
Confidence 12234444444444333 3344 77888888899999988877777888899999999998877 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHH
Q 002789 796 NTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLL 843 (881)
Q Consensus 796 ~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~ 843 (881)
++||++..||.++..+...+++.+. .-..+.+-.+..++.
T Consensus 826 ------e~~e~~~~f~~lle~l~~~~~~~~~--~l~~~~~~~~~~si~ 865 (1041)
T KOG2020|consen 826 ------EYPEHRLNFLLLLEALLLFCFPAFS--ELPADQVKLVSDSIV 865 (1041)
T ss_pred ------cchHHHHHHHHHHHHHHHhhhHHHH--cCCchhhHHHHHHHH
Confidence 7999999999999999998655443 222223445566666
No 6
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-45 Score=385.10 Aligned_cols=542 Identities=16% Similarity=0.262 Sum_probs=429.5
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCCCcC
Q 002789 23 KSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMR 102 (881)
Q Consensus 23 r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~ 102 (881)
|.+|.+||.+||+|+++|.+|.+++....+.+...||+|++++||++.++++|+.+..++|+++++++.....
T Consensus 1 ~~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~------- 73 (559)
T KOG2081|consen 1 KEKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHD------- 73 (559)
T ss_pred CchHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHh-------
Confidence 3579999999999999999999999988789999999999999999999999999999999999999997731
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002789 103 VLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKD 182 (881)
Q Consensus 103 ~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~ 182 (881)
. +..+|++++.++|.++.+. | .|.+.+.++++..++.+.....+|.+|+++|||+.+.. ......|+..+.+
T Consensus 74 ~---~~~i~tQL~vavA~Lal~~-~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~---~~~~a~Rr~e~~~ 145 (559)
T KOG2081|consen 74 H---PDVIRTQLAVAVAALALHM-P-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIR---LTVGANRRHEFID 145 (559)
T ss_pred C---CchHHHHHHHHHHHHHHHh-H-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchh---hhhhhhhHHHHHH
Confidence 2 4488999999999999996 3 79999999999998877668899999999999998763 2456688889999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhccccc--cccccccccc-ccHHHHHHHHhhCCCChhHHHHHHHH
Q 002789 183 AMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYIS--WIDINLIAND-AFIPLLFELILADGLPEQFRGAAVGC 259 (881)
Q Consensus 183 ~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~--wi~~~~~~~~-~~l~~l~~~L~~~~~~~~~~~~a~~~ 259 (881)
.+... .+.++..+..+|+.....+.+....+++|+++|.. -++.+.+.+. .++..+|..++ ..++.++|.+|
T Consensus 146 ~l~~~-~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~----~~~lhe~At~c 220 (559)
T KOG2081|consen 146 ELAAQ-VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS----DDELHEEATEC 220 (559)
T ss_pred HHHHh-HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc----cchhhHHHHHH
Confidence 99887 99999999999997533346778899999999987 5777888776 89999999998 88999999999
Q ss_pred HHHHHhcCCChhhh--HHHHHHhh---hhhhccccCCCccHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 002789 260 VLAVVSKRMDPQSK--LNLLQTLQ---ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNE 334 (881)
Q Consensus 260 l~~ii~~~~~~~~k--~~ll~~l~---l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (881)
++++++...++... +..+.+++ +...+......+|.+-.+++|++++.+|+.+.... ..+++ ..-.
T Consensus 221 ic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i--~~np~-------~~l~ 291 (559)
T KOG2081|consen 221 ICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLI--STNPE-------EFLR 291 (559)
T ss_pred HHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH--hhCCC-------cchh
Confidence 99999875444332 22222222 11222223456778888999999999998776431 11221 0124
Q ss_pred HHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCC------CCcHHHHHHHHHHHHHHHHhhccCcccccccccCCCCCh
Q 002789 335 VLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLS------PLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGI 408 (881)
Q Consensus 335 ~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~------~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~e 408 (881)
++..++.+.+|++++ ++++.+.||+.+++.- .....+++++.++++.+.++.+||++.+ +. -
T Consensus 292 ~vellLl~~~h~~~e----vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~-------~l-~ 359 (559)
T KOG2081|consen 292 IVELLLLVAGHNDTE----VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQF-------DL-P 359 (559)
T ss_pred HHHHHHHhccCCchh----hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccc-------cC-c
Confidence 566777888888764 4567777888876531 1123468999999999999999998432 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHH
Q 002789 409 EEEDRMVEYRKDLLVLLRSVGR-VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSE 487 (881)
Q Consensus 409 ed~~~f~~~R~~~~~~l~~i~~-~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ 487 (881)
|++++|.+||..+++++..++. ++.+.+++.++..+.+ ++++|+.+||+||.+++++..++.+. ++.+|+
T Consensus 360 Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e-----~~~~We~~EAaLF~l~~~~~~~~~~e----~~i~pe 430 (559)
T KOG2081|consen 360 EEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE-----NNASWEEVEAALFILRAVAKNVSPEE----NTIMPE 430 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc-----CCCchHHHHHHHHHHHHHhccCCccc----cchHHH
Confidence 3556899999999999998874 5778889988887775 45789999999999999999998774 789999
Q ss_pred HHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch
Q 002789 488 LVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (881)
Q Consensus 488 ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~ 567 (881)
+++.+.+ .+.-.| ++.+.+..+|+|++|+..||+++.+++.+.+ .|+... +.++.|+.+|.++|..|+.++.
T Consensus 431 vl~~i~n--lp~Q~~--~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~--~~~~~~--~~as~~a~~~~~i~~~c~~~~~ 502 (559)
T KOG2081|consen 431 VLKLICN--LPEQAP--LRYTSILLLGEYSEWVEQHPELLEPVLRYIR--QGLQLK--RLASAAALAFHRICSACRVQMT 502 (559)
T ss_pred HHHHHhC--Cccchh--HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH--HHhhhc--chhHHHHHHHHHHHHHHHHHhh
Confidence 9998876 443333 7888888999999999999999999998876 444433 3889999999999999999998
Q ss_pred hhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHH
Q 002789 568 PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQ 635 (881)
Q Consensus 568 p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~ 635 (881)
++++.+.+-+..+..... +.+... +..+++.+++.. |..+....++.+..|....
T Consensus 503 ~l~~~~~~l~~~l~~~~~----------~~e~a~-l~~~~s~i~~~l--p~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 503 CLIPSLLELIRSLDSTQI----------NEEAAC-LLQGISLIISNL--PAHKAKIALEELCEPQLRN 557 (559)
T ss_pred hhhHHHHHHHHHHHHHhc----------cHHHHH-HHHHHHHHHhcC--CHhhhhHHHHHHhhHHHhc
Confidence 888887777766555442 344555 999999999874 5667777888888876543
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-41 Score=380.88 Aligned_cols=594 Identities=17% Similarity=0.250 Sum_probs=406.6
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Q 002789 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (881)
Q Consensus 3 ~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~l 82 (881)
+++|.++.+.+| |+.+|++|++.|+..-..+..-.....++.++.++++|.+|+..+|+.+.+.|+.++.+.|+.|
T Consensus 5 ~l~qLl~~l~sp----Dn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 5 PLEQLLQQLLSP----DNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHHHHHhcCC----CchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 488999999976 8889999999999666655588888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcC-CchhHHHHHHHHHHHHHH
Q 002789 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK-GSMVIDMFCRVLNSLDDE 161 (881)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~-~~~~~~~~L~iL~~l~eE 161 (881)
|+.|+..+.++. .+.||+|+|.+++++++.+.|..||+.++.++++.++ ++..++..++||..+++.
T Consensus 81 ks~lL~~~~~E~------------~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 81 KSSLLEIIQSET------------EPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPET 148 (1075)
T ss_pred HHHHHHHHHhcc------------chHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence 999999999872 6789999999999999999999999999999999887 467899999999999998
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHH
Q 002789 162 LISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFE 241 (881)
Q Consensus 162 v~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~ 241 (881)
+.+...+ + +..+..++.+++.. .+++ ++..+++++.+|+...+.
T Consensus 149 ~~~~~~~------------------~-~~~l~~lf~q~~~d--~s~~-vr~~a~rA~~a~~~~~~~-------------- 192 (1075)
T KOG2171|consen 149 FGNTLQP------------------H-LDDLLRLFSQTMTD--PSSP-VRVAAVRALGAFAEYLEN-------------- 192 (1075)
T ss_pred hccccch------------------h-HHHHHHHHHHhccC--Ccch-HHHHHHHHHHHHHHHhcc--------------
Confidence 8653211 1 44555555555543 1222 444444444443322220
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHh-hhhhhccccCCCccHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 002789 242 LILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTL-QISRVFGLVSEDGESELVSKVAALLTGYAMEVLDC-VKRL 319 (881)
Q Consensus 242 ~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l-~l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~-~~~~ 319 (881)
++....++-..+ ++..+.+...+++|.+-...+=+.++.+ ++. .+.+
T Consensus 193 ---------------------------~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El----~e~~pk~l 241 (1075)
T KOG2171|consen 193 ---------------------------NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL----LESEPKLL 241 (1075)
T ss_pred ---------------------------chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH----HhhchHHH
Confidence 011000000011 1111111111223322222222222222 222 1111
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHHHHHhhccCccccc
Q 002789 320 NAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL-SPLKEEQRLHAGQILEVILTQIRYDPMYRN 398 (881)
Q Consensus 320 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~-~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~ 398 (881)
..++.+++.+.+++..+.+.+.+. -...++|...+.+. +.+.....++..+|+.+++.-|.- .++++
T Consensus 242 ---------~~~l~~ii~~~l~Ia~n~~l~~~~--R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte-~~~D~ 309 (1075)
T KOG2171|consen 242 ---------RPHLSQIIQFSLEIAKNKELENSI--RHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE-EEDDD 309 (1075)
T ss_pred ---------HHHHHHHHHHHHHHhhcccccHHH--HHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC-cccch
Confidence 236778899999999887554432 22233343333332 223333345677777777665553 22221
Q ss_pred ccccCCCCChHHHHHHH-HHHHHHHHHHHHHH-hcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcch
Q 002789 399 NLDVLDKIGIEEEDRMV-EYRKDLLVLLRSVG-RVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE 476 (881)
Q Consensus 399 ~~~~~~~~~eed~~~f~-~~R~~~~~~l~~i~-~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~ 476 (881)
.|.++|+. |++++. .+|. ....++.++ .++|+.+++.+.+.+...+++ .+|..++|+|.++.++||||.+.
T Consensus 310 --ew~~~d~~-ded~~~~~~~~-A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EGc~~~ 382 (1075)
T KOG2171|consen 310 --EWSNEDDL-DEDDEETPYRA-AEQALDRLALHLGGKQVLPPLFEALEAMLQS---TEWKERHAALLALSVIAEGCSDV 382 (1075)
T ss_pred --hhcccccc-ccccccCcHHH-HHHHHHHHHhcCChhhehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcccHHH
Confidence 23332222 222222 2333 345667665 788999999999999999876 89999999999999999999988
Q ss_pred hhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHh-----hcCCChHHHHHHhhcccCCCCCCchhhhHH
Q 002789 477 AMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-----EHTQYIPVVLAAFLDERGIHHPNVHVSRRA 551 (881)
Q Consensus 477 ~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~-----~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A 551 (881)
+ ...++++++.++. ...+|||+||.+++..+||.+.-|. +|.+.+++.|-..+ ....+++|+.+|
T Consensus 383 m----~~~l~~Il~~Vl~--~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l----d~~~~~rV~ahA 452 (1075)
T KOG2171|consen 383 M----IGNLPKILPIVLN--GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL----DSTQNVRVQAHA 452 (1075)
T ss_pred H----HHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh----cccCchHHHHHH
Confidence 7 4688889888876 5589999999999999999997554 36777887776665 344577999999
Q ss_pred HHHHHHHHHHhhhc-chhhHHHHHH-HhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhh
Q 002789 552 SYLFMRVVKLLKAK-LVPFIENILQ-SLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLL 629 (881)
Q Consensus 552 ~~~f~~~~~~~~~~-l~p~~~~il~-~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll 629 (881)
+.++..|.+.|.+. +.||++.+++ .+.-++... ++.-+..+.-|||++..++. +....|.+.+|
T Consensus 453 a~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~-----------~~~v~e~vvtaIasvA~AA~---~~F~pY~d~~M 518 (1075)
T KOG2171|consen 453 AAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS-----------KPYVQEQAVTAIASVADAAQ---EKFIPYFDRLM 518 (1075)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC-----------chhHHHHHHHHHHHHHHHHh---hhhHhHHHHHH
Confidence 99999999999765 6899999999 555555433 35566677778888877643 67899999999
Q ss_pred HHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHHHhhc-ccCCCCCCCCcccHHHHHHHHHHHHHHHh-hcCCCCh
Q 002789 630 TPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSK-GFNERLVTSSRPAIGLMFKQTLDVLLQIL-VVFPKVE 706 (881)
Q Consensus 630 ~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~l~k-~f~~~~~~~~~~~~~~if~~~~~~~~~~l-~~~~~~~ 706 (881)
+-+..-+++.-+ ++....... +.|......++|| .|.+. -.+++++....- +....++
T Consensus 519 p~L~~~L~n~~~-------~d~r~LrgktmEcisli~~AVGke~F~~~------------a~eliqll~~~~~~~~~~dd 579 (1075)
T KOG2171|consen 519 PLLKNFLQNADD-------KDLRELRGKTMECLSLIARAVGKEKFLPL------------AEELIQLLLELQGSDQDDDD 579 (1075)
T ss_pred HHHHHHHhCCCc-------hhhHHHHhhHHHHHHHHHHHhhhhhhhHh------------HHHHHHHHHhhcccchhhcc
Confidence 987776655422 122222233 5555555556663 44333 234444444321 1223567
Q ss_pred hHhhHHHHHHHHHHHhhCccccccHHHHHHHHHcc
Q 002789 707 PLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAE 741 (881)
Q Consensus 707 ~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~ 741 (881)
.++++...+|.||+.++|++|.||+|.+++.++..
T Consensus 580 ~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 580 PLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred ccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHh
Confidence 88999999999999999999999999999999853
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-32 Score=291.38 Aligned_cols=647 Identities=15% Similarity=0.203 Sum_probs=434.1
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcC--cchHHHHHHHhccCC-hhHHHHHHHHHHHHHHH-----------h
Q 002789 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKET--PSICRICIEKLSLCN-IVQVQFWCLQTLSEVVR-----------V 69 (881)
Q Consensus 4 l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~--~~~w~~~~~lL~~~~-~~~vrffa~~~L~~~I~-----------~ 69 (881)
+.+++....+| |+..|.+|+++|++++++ |.......++|.+.+ ++.+|..|+..||+.+. .
T Consensus 3 ~~~~le~tlSp----D~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 3 LLELLEKTLSP----DQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred HHHHHHHHcCC----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 34455455544 889999999999999984 455666677777654 49999999999999876 4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCCc--h
Q 002789 70 KYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKGS--M 146 (881)
Q Consensus 70 ~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~-~Wp~~i~~l~~~~~~~~--~ 146 (881)
||-.++.|.|+++|+.++..+... .+...+-.+++++.|+..+-|+ .||+++..+.+.....+ .
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~-------------ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~ 145 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSP-------------EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASM 145 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCC-------------CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchH
Confidence 799999999999999999988743 2345588999999999999997 89999999999987643 3
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccc
Q 002789 147 VIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID 226 (881)
Q Consensus 147 ~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~ 226 (881)
..+..|+.+..++|++.- +.+.++ ...|+.-..+-... ..++..++-++++||-.-+.+..
T Consensus 146 ~k~~slealGyice~i~p-----------------evl~~~-sN~iLtaIv~gmrk-~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 146 VKESSLEALGYICEDIDP-----------------EVLEQQ-SNDILTAIVQGMRK-EETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHHHHHHHccCCH-----------------HHHHHH-HhHHHHHHHhhccc-cCCchhHHHHHHHHHHHHHHHHH
Confidence 568899999999998842 112222 22222211111111 13466778889999888777765
Q ss_pred cccccc---cccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHH-H-HhhhhhhccccCCCccHHHHHHH
Q 002789 227 INLIAN---DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLL-Q-TLQISRVFGLVSEDGESELVSKV 301 (881)
Q Consensus 227 ~~~~~~---~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll-~-~l~l~~i~~~~~~~~d~~~~~~l 301 (881)
-++-.+ +-++++.++.-+ .++.+++.+|+.||+.|++.+++-.. ..+ + .+.+. +....+++| +....-
T Consensus 207 ~nF~~E~ern~iMqvvcEatq--~~d~~i~~aa~~ClvkIm~LyY~~m~--~yM~~alfait--l~amks~~d-eValQa 279 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEATQ--SPDEEIQVAAFQCLVKIMSLYYEFME--PYMEQALFAIT--LAAMKSDND-EVALQA 279 (859)
T ss_pred HhhccHhhhceeeeeeeeccc--CCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHHcCCcH-HHHHHH
Confidence 443322 347778888777 45889999999999999986532100 011 1 11110 111222333 333223
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccC-CCCcH-HHHHHH
Q 002789 302 AALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL-SPLKE-EQRLHA 379 (881)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~-~~l~~-~~~~~l 379 (881)
-+++++++.+=.+. .. +|-....+. +|-+. -.+.-+
T Consensus 280 iEFWsticeEEiD~-------------------~~-----------------------e~~e~~d~~~~p~~~~fa~~a~ 317 (859)
T KOG1241|consen 280 IEFWSTICEEEIDL-------------------AI-----------------------EYGEAVDQGLPPSSKYFARQAL 317 (859)
T ss_pred HHHHHHHHHHHHHH-------------------HH-----------------------HHHHHhhcCCCchhhHHHHHHH
Confidence 33444433221110 00 000000000 11000 013456
Q ss_pred HHHHHHHHHhhcc-CcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhh
Q 002789 380 GQILEVILTQIRY-DPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEE 458 (881)
Q Consensus 380 ~~Ll~~l~~km~~-p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~ 458 (881)
..+++++++.+.. +|+++ .|+ ++--+..+.+|...+..-++++.+++.+.+++.+++ .+|+.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d-----~Dd---------Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~---pdwr~ 380 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDD-----DDD---------WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN---PDWRN 380 (859)
T ss_pred hHhhHHHHHHHHhCCCCcc-----ccc---------CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC---cchhh
Confidence 6777888888877 33322 111 445677899999999999999999999999998876 88999
Q ss_pred HHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhh---cCCChHHHHHHhh
Q 002789 459 VEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE---HTQYIPVVLAAFL 535 (881)
Q Consensus 459 ~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~---~~~~L~~vL~~~l 535 (881)
+|||.++++++-++-.... .....++.++.++. ...++.-.|+.+.-|++||.++++.. |..++.+++..++
T Consensus 381 reaavmAFGSIl~gp~~~~---Lt~iV~qalp~ii~--lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~ 455 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDK---LTPIVIQALPSIIN--LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL 455 (859)
T ss_pred hhHHHHHHHhhhcCCchhh---hhHHHhhhhHHHHH--HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH
Confidence 9999988888777654443 23333444444433 11233334456666799999999875 5668888888887
Q ss_pred cccCCCCCCchhhhHHHHHHHHHHHHhhhc---------chhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHH
Q 002789 536 DERGIHHPNVHVSRRASYLFMRVVKLLKAK---------LVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEA 606 (881)
Q Consensus 536 ~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~---------l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Ea 606 (881)
.|+. .+|+|...+|.+|..|++.|... ..||++.|+..+-...... + + -...-+...|||
T Consensus 456 --~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~---d-g----nqsNLR~AAYeA 524 (859)
T KOG1241|consen 456 --EGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRA---D-G----NQSNLRSAAYEA 524 (859)
T ss_pred --HHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcccc---c-c----chhhHHHHHHHH
Confidence 6675 57899999999999999988643 2378889988875433321 1 0 024457779999
Q ss_pred HHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHH-HHHHHHHhhcccCCCCCCCCcccHH
Q 002789 607 IGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQ-IIMAINALSKGFNERLVTSSRPAIG 685 (881)
Q Consensus 607 ig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~l~k~f~~~~~~~~~~~~~ 685 (881)
++.+|... +..-...+..+..-...+++++++.... +.++......+.. +...++.+-+.+.+.. .
T Consensus 525 LmElIk~s---t~~vy~~v~~~~l~il~kl~q~i~~~~l--~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~--------~ 591 (859)
T KOG1241|consen 525 LMELIKNS---TDDVYPMVQKLTLVILEKLDQTISSQIL--SLADRAQLNELQSLLCNTLQSIIRKVGSDI--------R 591 (859)
T ss_pred HHHHHHcC---cHHHHHHHHHHHHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHHHHHHHHHHccccc--------h
Confidence 99999874 3566777888888888889988882221 1122111111111 1223344444444332 5
Q ss_pred HHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccC-Ch---hhHHHHHHHHHHHHHHh
Q 002789 686 LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES-EP---KEMAGFLVLLNQLICKF 761 (881)
Q Consensus 686 ~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~-~~---~~~~~~L~l~~~li~~~ 761 (881)
++-.++|..++++++. +++..+.+-+.-++..++..+|..|..|+|.+.+.++... +. .-+...+++++.+.+..
T Consensus 592 ~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 592 EVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999987 6777788888899999999999999999999999998765 22 23456789999999999
Q ss_pred hcchHHHhhhhHHHHHHHHHhhccC
Q 002789 762 NTLVHDILDEVFPAIAGRIFNIIPR 786 (881)
Q Consensus 762 ~~~~~~~l~~ll~~l~~~~~~~l~~ 786 (881)
+.++.|+++.++..++ +.|..
T Consensus 671 ~~~i~py~d~~mt~Lv----q~Lss 691 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLV----QCLSS 691 (859)
T ss_pred HhhhhhHHHHHHHHHH----HHccC
Confidence 9999999999988888 44544
No 9
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.5e-25 Score=235.29 Aligned_cols=645 Identities=14% Similarity=0.131 Sum_probs=427.3
Q ss_pred CCHHHHHHHHHHHHHHhcCc--chHHHHHHHhccC-ChhHHHHHHHHHHHHHHH-----------hhccCCCHHHHHHHH
Q 002789 18 IDSMLKSQAVNFCQQIKETP--SICRICIEKLSLC-NIVQVQFWCLQTLSEVVR-----------VKYTSMSSEERNLIR 83 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~--~~w~~~~~lL~~~-~~~~vrffa~~~L~~~I~-----------~~w~~l~~e~~~~lr 83 (881)
+|+..|..|+..|.++++.. +...+..+.|-+. ++++.|..|+.+||+.+. .+|-.++.|.|+++|
T Consensus 17 pD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK 96 (858)
T COG5215 17 PDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVK 96 (858)
T ss_pred CCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHH
Confidence 48889999999999999742 2334445555443 459999999999999876 479999999999999
Q ss_pred HHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCCc--hhHHHHHHHHHHHHH
Q 002789 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKGS--MVIDMFCRVLNSLDD 160 (881)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~-~Wp~~i~~l~~~~~~~~--~~~~~~L~iL~~l~e 160 (881)
...+..+.+. + |.+- +-.+++++.|+..+.|. .||+++..+......+. .+..-.|.++...+|
T Consensus 97 ~~al~aL~s~-----------e-pr~~-~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 97 GMALRALKSP-----------E-PRFC-TMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred HHHHHHhcCC-----------c-cHHH-HHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 9999888743 2 6666 99999999999999997 79999999999886642 344456677777665
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccc---cccHH
Q 002789 161 ELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN---DAFIP 237 (881)
Q Consensus 161 Ev~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~---~~~l~ 237 (881)
-..- +.+.+..-.-++..+...+.+ ..+..++-.+|+|+-.-+.++.-++-.+ +.+++
T Consensus 164 s~~P-----------------e~li~~sN~il~aiv~ga~k~--et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mq 224 (858)
T COG5215 164 SEAP-----------------EDLIQMSNVILFAIVMGALKN--ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQ 224 (858)
T ss_pred ccCH-----------------HHHHHHhhHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhhe
Confidence 3321 011111012234444444432 3456777889999887555554333221 34778
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhhhhhhccccCCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 002789 238 LLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVK 317 (881)
Q Consensus 238 ~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~~~ 317 (881)
..+...+ .++.++..+|..||+.|+....+ +++.. .+
T Consensus 225 vvceatq--~~d~e~q~aafgCl~kim~LyY~------fm~~y-----------------mE------------------ 261 (858)
T COG5215 225 VVCEATQ--GNDEELQHAAFGCLNKIMMLYYK------FMQSY-----------------ME------------------ 261 (858)
T ss_pred eeehhcc--CCcHHHHHHHHHHHHHHHHHHHH------HHHHH-----------------HH------------------
Confidence 8888777 45788999999999998875421 11100 00
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccC-----------CCCcH----HHHHHHHHH
Q 002789 318 RLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL-----------SPLKE----EQRLHAGQI 382 (881)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~-----------~~l~~----~~~~~l~~L 382 (881)
+.+..+.-+++..+++.+....+ +||+..... |..+. -.+.-+.++
T Consensus 262 ---------------~aL~alt~~~mks~nd~va~qav----EfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dv 322 (858)
T COG5215 262 ---------------NALAALTGRFMKSQNDEVAIQAV----EFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADV 322 (858)
T ss_pred ---------------HHHHHHHHHHhcCcchHHHHHHH----HHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHH
Confidence 00011111112222222222111 233222111 00000 012233444
Q ss_pred HHHHHHhhcc-CcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHH
Q 002789 383 LEVILTQIRY-DPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEA 461 (881)
Q Consensus 383 l~~l~~km~~-p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~Ea 461 (881)
++.++.-+.. .||.+ .|+| +.-+..+.+|...+.+-++.++.-+...+++.+++ .+|.++||
T Consensus 323 lP~lL~LL~~q~ed~~-----~DdW---------n~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~---~~w~nrea 385 (858)
T COG5215 323 LPELLSLLEKQGEDYY-----GDDW---------NPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS---ESWANREA 385 (858)
T ss_pred HHHHHHHHHhcCCCcc-----cccc---------chhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC---chhhhHHH
Confidence 4444444444 33332 1222 23455678899999888888888888888888875 78999999
Q ss_pred HHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhh--cCC-ChHHHHHHhhccc
Q 002789 462 ALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--HTQ-YIPVVLAAFLDER 538 (881)
Q Consensus 462 aL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~--~~~-~L~~vL~~~l~~~ 538 (881)
|..+++++-++-.+.. ....+++.++.+.. ...++.--|..+.-|++|+.++++.. +|. +|++...+.+ .
T Consensus 386 avmAfGSvm~gp~~~~---lT~~V~qalp~i~n--~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~l--i 458 (858)
T COG5215 386 AVMAFGSVMHGPCEDC---LTKIVPQALPGIEN--EMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASL--I 458 (858)
T ss_pred HHHHhhhhhcCccHHH---HHhhHHhhhHHHHH--hcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHH--h
Confidence 9988777766544433 34555666665554 22344444555556689999999976 564 7888877766 5
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHhhh-------cchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHh
Q 002789 539 GIHHPNVHVSRRASYLFMRVVKLLKA-------KLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLI 611 (881)
Q Consensus 539 gl~~~~~~v~~~A~~~f~~~~~~~~~-------~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li 611 (881)
|+. .+|++...+|..+..|+....+ .+.||.+.|+..+-....... -....+..+|+|+|++|
T Consensus 459 Gl~-D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~---------Ne~n~R~s~fsaLgtli 528 (858)
T COG5215 459 GLM-DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL---------NESNLRVSLFSALGTLI 528 (858)
T ss_pred hhh-ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc---------cchhHHHHHHHHHHHHH
Confidence 655 4678888999999998876653 345788888888754332211 13557888999999999
Q ss_pred ccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHH
Q 002789 612 GMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQ 690 (881)
Q Consensus 612 ~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~ 690 (881)
... ++.-.+.+-.+......++.++++-....-+.||....-+ ....+.++.++.+.+.+.. .++=.+
T Consensus 529 ~~~---~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i--------e~v~D~ 597 (858)
T COG5215 529 LIC---PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI--------EDVEDQ 597 (858)
T ss_pred hhc---chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------ccHHHH
Confidence 874 3566778888888888899988876554334455444333 5556677777777776643 556677
Q ss_pred HHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChh---hHHHHHHHHHHHHHHhhcchHH
Q 002789 691 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK---EMAGFLVLLNQLICKFNTLVHD 767 (881)
Q Consensus 691 ~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~---~~~~~L~l~~~li~~~~~~~~~ 767 (881)
+++++.++++.- +...+-+-+..++..+..++|+.|..|+|.+++.+....+.. -+...+++++.+....+.++.+
T Consensus 598 lm~Lf~r~les~-~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~ 676 (858)
T COG5215 598 LMELFIRILEST-KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNI 676 (858)
T ss_pred HHHHHHHHHhcc-CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 899999998765 344567778999999999999999999999999998876433 2356678999999999999988
Q ss_pred HhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 002789 768 ILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIAT 819 (881)
Q Consensus 768 ~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~ 819 (881)
+.+.++..++ +++.... .+.|++-+-+...++|..
T Consensus 677 y~d~~ms~Lv----Q~lss~~-------------~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 677 YADVLMSSLV----QCLSSEA-------------THRDLKPAILSVFGDIAL 711 (858)
T ss_pred HHHHHHHHHH----HHhcChh-------------hccccchHHHHHHHHHHH
Confidence 8888877777 6665543 344566666666666544
No 10
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-20 Score=212.46 Aligned_cols=740 Identities=14% Similarity=0.168 Sum_probs=419.3
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCCh-hHHHHHHHHHHHHHHHhhccC--------
Q 002789 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNI-VQVQFWCLQTLSEVVRVKYTS-------- 73 (881)
Q Consensus 3 ~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~-~~vrffa~~~L~~~I~~~w~~-------- 73 (881)
.+.+++.+..+| ||+.|+.|++.|+++++.|+.-..+.++..+... ..||.-|+.-|||+|.+.|..
T Consensus 5 ~l~~~~~~T~d~----d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 5 SLLQIFRATIDS----DAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred HHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 477888888876 7999999999999999999999999999987655 678999999999999999975
Q ss_pred -CCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHH
Q 002789 74 -MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMF 151 (881)
Q Consensus 74 -l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~ 151 (881)
+++++|..+|+.|+..+.+. |..+|.++..++-.|++.+||.+||++++-+-..++++. .+....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~-------------p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~a 147 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQV-------------PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGA 147 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhC-------------chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHH
Confidence 58999999999999999864 889999999999999999999999999999999998865 344556
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccc-cccccc
Q 002789 152 CRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISW-IDINLI 230 (881)
Q Consensus 152 L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~w-i~~~~~ 230 (881)
|-.|..|..-. +.. ...++..+-..|.+- +|.|.+...+++..-+..+.++.+..++++++++-. +|.
T Consensus 148 Ll~l~qL~k~y---e~k----~~eeR~~l~~~v~~~-fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~--- 216 (1010)
T KOG1991|consen 148 LLCLYQLFKTY---EWK----KDEERQPLGEAVEEL-FPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPL--- 216 (1010)
T ss_pred HHHHHHHHHHH---hhc----cccccccHHHHHHHH-HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCH---
Confidence 66666554322 111 112344556666666 999999999998763334567888899988876643 222
Q ss_pred cccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCC-------ChhhhHHH-------HHHhhhhhhccccCC-----
Q 002789 231 ANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRM-------DPQSKLNL-------LQTLQISRVFGLVSE----- 291 (881)
Q Consensus 231 ~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~-------~~~~k~~l-------l~~l~l~~i~~~~~~----- 291 (881)
.|. .++.....++.+..|+.+.. +|+++... ...-.+..++.++..
T Consensus 217 -----------~L~----~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~ 281 (1010)
T KOG1991|consen 217 -----------ELS----APETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVV 281 (1010)
T ss_pred -----------Hhh----CchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccc
Confidence 222 55566667777777777642 33332111 111123344443211
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH-HhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCC
Q 002789 292 DGESELVSKVAALLTGYAMEVLDC-VKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSP 370 (881)
Q Consensus 292 ~~d~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~ 370 (881)
.+-.+|.+.+ ..++...+++. ++.++ ..-. ..-.+..+.-+++.|.........
T Consensus 282 ~~y~~Fa~~f---~~n~~~~ile~~lk~l~--------------------~~~~--~~yls~rvl~~~l~fl~~~Vs~~~ 336 (1010)
T KOG1991|consen 282 PEYKEFAQMF---LKNFAQGILEVFLKILE--------------------QWRQ--QLYLSDRVLYYLLNFLEQCVSHAS 336 (1010)
T ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHH--------------------HHHh--cccCCHHHHHHHHHHHHHhccHHH
Confidence 1112333221 12222222222 11111 0001 001122334444444432221111
Q ss_pred CcHHHHHHHHHHHH-HHHHhhccCcccccccccCCCCChHHHHHHHHHHHH-------------HHHHHHHHHhcChhhH
Q 002789 371 LKEEQRLHAGQILE-VILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD-------------LLVLLRSVGRVAPEVT 436 (881)
Q Consensus 371 l~~~~~~~l~~Ll~-~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~-------------~~~~l~~i~~~~~~~~ 436 (881)
+-...+|++.-++. +++.-|++-+++++. +++ |..++ .|+. ..+++-.++...+..+
T Consensus 337 twkll~PHl~~ii~~vIFPlmc~~d~deel------we~-DP~EY--iR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~ 407 (1010)
T KOG1991|consen 337 TWKLLKPHLQVIIQDVIFPLMCFNDEDEEL------WEE-DPYEY--IRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET 407 (1010)
T ss_pred HHHHhhhHHHHHHHHhhhhhcCCCcccHHH------Hhc-CHHHH--HHhcCchhcccCCCcHHHHHHHHHHHHhcchhh
Confidence 11112466666666 455567774443311 111 11111 2222 3556666777776666
Q ss_pred HHHHHHHHHHhhccc-----CCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHH-HHHHhCCCCCCCChhHHHHHH
Q 002789 437 QVFIRNSLANAVTFS-----ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV-PMLLQTKLPCHSNRLVALVYL 510 (881)
Q Consensus 437 l~~i~~~l~~~l~~~-----~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll-~~l~~~~~~~~~~p~v~~~~~ 510 (881)
++-+.+.+.+.++++ ...+.+..|.||++++++++.+..... ..+.+..++ +.+.. ....+--.+|...|
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~--~~~~mE~flv~hVfP--~f~s~~g~Lrarac 483 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP--YKSQMEYFLVNHVFP--EFQSPYGYLRARAC 483 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc--hHHHHHHHHHHHhhH--hhcCchhHHHHHHH
Confidence 666666666666532 346788999999999999987765431 122333322 22221 11223333577778
Q ss_pred HHHHHhHHHHhhcCCChHHHHHHhhcccCCC-CCCchhhhHHHHHHHHHHHHhh---hcchhhHHHHHHHhhhhhhcccc
Q 002789 511 ETVTRYMKFIQEHTQYIPVVLAAFLDERGIH-HPNVHVSRRASYLFMRVVKLLK---AKLVPFIENILQSLQDTIARFTS 586 (881)
Q Consensus 511 ~~igry~~~l~~~~~~L~~vL~~~l~~~gl~-~~~~~v~~~A~~~f~~~~~~~~---~~l~p~~~~il~~l~~~l~~~~~ 586 (881)
|++++|++-=-+++..+..++.... +++. +++--|+--|+.|+..|..+|+ ..+.|+++++++.+-.+....
T Consensus 484 ~vl~~~~~~df~d~~~l~~ale~t~--~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-- 559 (1010)
T KOG1991|consen 484 WVLSQFSSIDFKDPNNLSEALELTH--NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-- 559 (1010)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHH--HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc--
Confidence 8999999533345556666666554 4555 5555799999999999999988 448999999999997766543
Q ss_pred cCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHH
Q 002789 587 MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAIN 666 (881)
Q Consensus 587 p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 666 (881)
..++...++|.+ |..-+ ++-..+...+++-+.+.+-++++......+.++-+.+.. .-+++.++
T Consensus 560 ---------End~Lt~vme~i---V~~fs---eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA-~GiL~Ti~ 623 (1010)
T KOG1991|consen 560 ---------ENDDLTNVMEKI---VCKFS---EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAA-SGILRTIS 623 (1010)
T ss_pred ---------chhHHHHHHHHH---HHHHH---HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHH-HHHHHHHH
Confidence 345566666665 44321 445566677777777777777775221111122222321 11222223
Q ss_pred HhhcccCCCCCCCCcccHHHHHHHHHH----HHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccC
Q 002789 667 ALSKGFNERLVTSSRPAIGLMFKQTLD----VLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (881)
Q Consensus 667 ~l~k~f~~~~~~~~~~~~~~if~~~~~----~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~ 742 (881)
++--.+... .+++.++-+ ++.-++.+... ..-+.+......+ .++-+++.|-+=.+.+.+++.+
T Consensus 624 Til~s~e~~---------p~vl~~le~~~l~vi~~iL~~~i~--dfyeE~~ei~~~~-t~~~~~Isp~mW~ll~li~e~~ 691 (1010)
T KOG1991|consen 624 TILLSLENH---------PEVLKQLEPIVLPVIGFILKNDIT--DFYEELLEIVSSL-TFLSKEISPIMWGLLELILEVF 691 (1010)
T ss_pred HHHHHHhcc---------HHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhhh-hhhhcccCHHHHHHHHHHHHHH
Confidence 332233222 344444443 33333432211 1221222222222 3345556665555666655554
Q ss_pred Ch---hhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 002789 743 EP---KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIAT 819 (881)
Q Consensus 743 ~~---~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~ 819 (881)
.. .-..++..++...|..-+...... ......+++-+-.+++... + +.+|. ++..+++.-++.
T Consensus 692 ~~~~~dyf~d~~~~l~N~vt~g~~~~~s~-~~y~~il~~i~~~~l~~e~---~---------~D~d~-~~a~kLle~iiL 757 (1010)
T KOG1991|consen 692 QDDGIDYFTDMMPALHNYVTYGTPSLLSN-PDYLQILLEIIKKVLTSEN---G---------EDSDC-ESACKLLEVIIL 757 (1010)
T ss_pred hhhhHHHHHHHHHHHhhheeeCchhhhcc-chHHHHHHHHHHHHHcCCC---C---------chHHH-HHHHHHHHHHHH
Confidence 32 223455555555554333322110 0011223322223333321 1 23343 346678877777
Q ss_pred cCCccccccCCCcCChHHHHHHHHHhhcC-CCCccchhHhhHHHHHHHHhhhhHHhhh
Q 002789 820 HDLSSVFLSPKSRGYLDPIMQLLLYTSCN-HKDYLVRKVCYFLGFFSTLHLGFSILIS 876 (881)
Q Consensus 820 ~~~~~~l~s~~~~~~l~~~l~~~~~~~~~-~~d~~~~k~~~~~~~~~~~~~~~~~~~~ 876 (881)
+| ... +.. .++.+++.++..... ..+....++|+. +.+.-+.+.+...+.
T Consensus 758 ~~-kg~-~dq----~iplf~~~a~~~l~~~~e~s~~~~~~le-VvinalyynP~ltL~ 808 (1010)
T KOG1991|consen 758 NC-KGL-LDQ----YIPLFLELALSRLTREVETSELRVMLLE-VVINALYYNPKLTLG 808 (1010)
T ss_pred Hh-cCc-Hhh----HhHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHcCcHHHHH
Confidence 77 432 221 456666666633333 233444555554 666666666665544
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.4e-18 Score=188.04 Aligned_cols=732 Identities=14% Similarity=0.199 Sum_probs=373.5
Q ss_pred ChhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCC-hhHHHHHHHHHHHHHHHhhcc-------
Q 002789 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCN-IVQVQFWCLQTLSEVVRVKYT------- 72 (881)
Q Consensus 1 m~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~-~~~vrffa~~~L~~~I~~~w~------- 72 (881)
|+++.+.++...+| ||+.|+-|++.|++.+.++..--....++.+++ +.++|.-|+..+|+.|+++|.
T Consensus 4 le~l~~~l~qTl~p----dps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 4 LETLANYLLQTLSP----DPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHHHhcCCC----CCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 56777777776655 889999999999999998776677778887766 699999999999999999996
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCch-hHHHH
Q 002789 73 SMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSM-VIDMF 151 (881)
Q Consensus 73 ~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~-~~~~~ 151 (881)
.+.+++++.||..++..+.+. +.-|..++..++..|++++||++||++++++.+.+++++- +....
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s-------------~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gV 146 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSS-------------PFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGV 146 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcC-------------cHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHH
Confidence 377889999999999988754 6678899999999999999999999999999999987643 23333
Q ss_pred HHHHHHHHHHhhhc-CC-CCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhccccccccccc
Q 002789 152 CRVLNSLDDELISL-DY-PRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINL 229 (881)
Q Consensus 152 L~iL~~l~eEv~~~-~~-~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~ 229 (881)
|..-.. ++.+ +. .|++.--.-....-|.+.+- ...++.-.+...+.. ..+....+..+..+.
T Consensus 147 L~tahs----iFkr~R~efrSdaL~~EIK~vLd~f~~P-lt~Lf~~t~~l~~~~-~~~~~~l~~lf~vll---------- 210 (960)
T KOG1992|consen 147 LVTAHS----IFKRYRPEFRSDALWLEIKLVLDRFAEP-LTDLFRKTMELIQRH-ANDAAALNILFGVLL---------- 210 (960)
T ss_pred HHHHHH----HHHhcCcccccHHHHHHHHHHHHhhHhH-HHHHHHHHHHHHhhc-ccchhHHHHHHHHHH----------
Confidence 433322 2222 11 23332222222223344333 344444433333321 112221111111110
Q ss_pred ccccccHHHHHHHHhhCCCChhHHHHHHH----HHHHHHhcCCChhhhHHHHHHhhhhhhccccCCCccHH----HHHHH
Q 002789 230 IANDAFIPLLFELILADGLPEQFRGAAVG----CVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESE----LVSKV 301 (881)
Q Consensus 230 ~~~~~~l~~l~~~L~~~~~~~~~~~~a~~----~l~~ii~~~~~~~~k~~ll~~l~l~~i~~~~~~~~d~~----~~~~l 301 (881)
++-.+|..|+. ++-|++.+.-++ .|+..++... ..+. .++++.. ....+
T Consensus 211 -----l~~klfysLn~-QDiPEFFEdnm~~wM~~F~k~l~~~~---------------p~le--~~~ee~~~l~~lka~I 267 (960)
T KOG1992|consen 211 -----LICKLFYSLNF-QDIPEFFEDNMKTWMGAFHKLLTYDN---------------PLLE--SDEEEATVLDKLKAQI 267 (960)
T ss_pred -----HHHHHHHhhhc-ccchHHHHhhHHHHHHHHHHHHhccC---------------cccc--cCcccccHHHHHHHHH
Confidence 12223333331 223444443222 2222222110 0010 0111111 12233
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhc----cCCcc-hhhhHHHHHHHHHHHhccCCCCcHHH-
Q 002789 302 AALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQ----NCEVD-TTFSIVQFLSGYVATMKSLSPLKEEQ- 375 (881)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~----~~~~~-v~~~~~~~~~~~w~~l~~~~~l~~~~- 375 (881)
|+.++-+.+.+-+. ..+++.+++.....++. ++.+| ..... ..|+....+.+.+.+-+
T Consensus 268 CEi~~LY~~kYeEe------------f~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~A----l~FLt~V~~r~~y~~~F~ 331 (960)
T KOG1992|consen 268 CEIFNLYATKYEEE------------FQPFLPDFVTATWNLLVSTSPDTKYDYLVSKA----LQFLTSVSRRPHYAELFE 331 (960)
T ss_pred HHHHHHHHHhhHHH------------HHhhHHHHHHHHHHHHHhcCCCccHHHHHHHH----HHHHHHHHhhhhhHhhhc
Confidence 33333333222111 11123333333322222 22222 11122 23444433322221111
Q ss_pred -HHHHHHHHH-HHHHhhcc-CcccccccccCCCCChH------HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 002789 376 -RLHAGQILE-VILTQIRY-DPMYRNNLDVLDKIGIE------EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLAN 446 (881)
Q Consensus 376 -~~~l~~Ll~-~l~~km~~-p~~~~~~~~~~~~~~ee------d~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~ 446 (881)
..++.++.+ +++..+.. ++|.+ .++|+-.| +-.+....|+...++++-++......+..++...++.
T Consensus 332 ~~~vl~~i~e~VvlpN~~lR~eDeE----lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~ 407 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLILREEDEE----LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQR 407 (960)
T ss_pred chHHHHHHHHhhcccccccchhhHH----HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 234444444 33444443 22221 01111110 0002233566678999999877666777777777777
Q ss_pred hhccc---CCCChhhHHHHHHHHHHhhhcCcchh--------hhccchHH-HHHHHHHHhCCCCCCCChhHHHHHHHHHH
Q 002789 447 AVTFS---ADRNVEEVEAALTLLYALGESMSEEA--------MRTGAGHL-SELVPMLLQTKLPCHSNRLVALVYLETVT 514 (881)
Q Consensus 447 ~l~~~---~~~~w~~~EaaL~~l~~i~e~~~~~~--------~~~~~~~l-~~ll~~l~~~~~~~~~~p~v~~~~~~~ig 514 (881)
.++++ .+.+|...+.+++++.+++-...... .-+...++ .+++..|.+.+ ..+||.++...+
T Consensus 408 ~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~--vn~~pilka~aI---- 481 (960)
T KOG1992|consen 408 LLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPN--VNEFPILKADAI---- 481 (960)
T ss_pred HHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCc--cccccchhhccc----
Confidence 77754 35789999999999999876322111 00123344 34666666422 357888754332
Q ss_pred HhHHHHhhc--CCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhh---------cchhhHHHHHHHhhhhhhc
Q 002789 515 RYMKFIQEH--TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA---------KLVPFIENILQSLQDTIAR 583 (881)
Q Consensus 515 ry~~~l~~~--~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~---------~l~p~~~~il~~l~~~l~~ 583 (881)
+|.--|+++ ++++-..+...+ +++..+..-|-+=|++++-++---|.+ .+.||+..++..+...+..
T Consensus 482 Ky~~~FR~ql~~~~lm~~~p~li--~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~ 559 (960)
T KOG1992|consen 482 KYIYTFRNQLGKEHLMALLPRLI--RFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL 559 (960)
T ss_pred ceeeeecccCChHHHHHHHHHHH--HhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC
Confidence 233334554 456666666555 556655667777788888886644433 4568888888888655553
Q ss_pred ccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHH
Q 002789 584 FTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQII 662 (881)
Q Consensus 584 ~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~ 662 (881)
. ...+-.|++.||-.+++... +....+...++.-+.+.+.+..+ |+.+.+.-.- .....
T Consensus 560 p-----------~~~EneylmKaImRii~i~~---~~i~p~~~~~l~~Lteiv~~v~K------NPs~P~fnHYLFEsi~ 619 (960)
T KOG1992|consen 560 P-----------GKAENEYLMKAIMRIISILQ---SAIIPHAPELLRQLTEIVEEVSK------NPSNPQFNHYLFESIG 619 (960)
T ss_pred C-----------cccccHHHHHHHHHHHHhCH---HhhhhhhhHHHHHHHHHHHHHhc------CCCCchhHHHHHHHHH
Confidence 3 23567799999999888642 33334444444433333333322 2222222222 22222
Q ss_pred HHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccC
Q 002789 663 MAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (881)
Q Consensus 663 ~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~ 742 (881)
.++....+.= +. .+...-..+++++..++.. +-.+.--++.+.++-++..-+..+-+..-++++.+++.-
T Consensus 620 ~li~~t~~~~-~~-------~vs~~e~aL~p~fq~Il~e--DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~ 689 (960)
T KOG1992|consen 620 LLIRKTCKAN-PS-------AVSSLEEALFPVFQTILSE--DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN 689 (960)
T ss_pred HHHHHHhccC-ch-------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH
Confidence 2222222211 11 0112223344444444431 111222255555565555433322222223333334321
Q ss_pred ---ChhhHHHHHHHHHHHHHHhhcchH--HHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002789 743 ---EPKEMAGFLVLLNQLICKFNTLVH--DILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVI 817 (881)
Q Consensus 743 ---~~~~~~~~L~l~~~li~~~~~~~~--~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i 817 (881)
....++..+.++..++.+=...+. +.+. ++++..-.++.... . | ..-|.++.++
T Consensus 690 lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~----~iLGifqkLiaSka---~---------D-----h~GF~LLn~i 748 (960)
T KOG1992|consen 690 LWKRSGNIPALVRLLQAFLKTGSQIVEAADKLS----GILGIFQKLIASKA---N---------D-----HHGFYLLNTI 748 (960)
T ss_pred HHhhcCCcHHHHHHHHHHHhcCchhhcccccch----hHHHHHHHHhcCcc---c---------c-----hhHHHHHHHH
Confidence 122345666666666655222222 2233 33322224443322 1 1 1257788888
Q ss_pred HhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHHHHHHHhhhhHHh
Q 002789 818 ATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFSIL 874 (881)
Q Consensus 818 ~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~~~ 874 (881)
+.+-....+ .|++..+...+++......-+--.|.+. .|++.+.-..+|+
T Consensus 749 ~~~~~~~~~-----~py~k~i~~llf~RlqnskT~kf~k~~~--vF~~~~~ik~~~~ 798 (960)
T KOG1992|consen 749 IESIPPNEL-----APYMKQIFGLLFQRLQNSKTEKFVKSFI--VFFSLFTIKKGGL 798 (960)
T ss_pred HhcCCHhhh-----hHHHHHHHHHHHHHHhccCcHHHHHHHH--HHHHHHHHHhhhH
Confidence 876544332 3456677777775433222233345554 4666666655554
No 12
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.5e-15 Score=163.18 Aligned_cols=786 Identities=15% Similarity=0.222 Sum_probs=429.9
Q ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
.+++.....+|.. +|+..|.+|++-|.+|-.+|++...|.-+|.+++.++....|+..|-+.+..+ ..+|-++|..
T Consensus 5 aqLe~lCk~LY~s---~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrld 80 (1082)
T KOG1410|consen 5 AQLESLCKDLYES---TDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLD 80 (1082)
T ss_pred HHHHHHHHHHHhc---CCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHH
Confidence 4677788899976 79999999999999999999999999999999999999999999999887764 4799999999
Q ss_pred HHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCC------CChhhHHHHHHhhcCC-chhHHHHHHH
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL------IWSSVFVDFLPQLNKG-SMVIDMFCRV 154 (881)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~------~Wp~~i~~l~~~~~~~-~~~~~~~L~i 154 (881)
||+++++|+..- +|..++||...++++++.+-|..|-+ ...+.+.++.+.++.+ ..++-+.++|
T Consensus 81 ir~Yilnylat~---------~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 81 IRNYILNYLATG---------APKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQI 151 (1082)
T ss_pred HHHHHHHHHhcC---------CCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHH
Confidence 999999999863 23337899999999999999999865 3567888888887765 6789999999
Q ss_pred HHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC---C-------HHHHHHHHHHhc-cccc
Q 002789 155 LNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSS---D-------FEVCTGVLDCMR-RYIS 223 (881)
Q Consensus 155 L~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~---~-------~~l~~~~L~~l~-~~i~ 223 (881)
|..|..|+...+-. ....+.+++...+|.....+||.+-.++|...... + ..+.+.+++|+. .|+.
T Consensus 152 LsqLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiG 228 (1082)
T KOG1410|consen 152 LSQLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIG 228 (1082)
T ss_pred HHHHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccc
Confidence 99999999765432 23445556667777766888888888888753210 1 235566777765 1221
Q ss_pred c-cc------------c---ccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCC---ChhhhHHHHHHh--hh
Q 002789 224 W-ID------------I---NLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRM---DPQSKLNLLQTL--QI 282 (881)
Q Consensus 224 w-i~------------~---~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~---~~~~k~~ll~~l--~l 282 (881)
- +| . +.+.++..+++.|++.++ -.|++...|++|++.+++-+. ...++.+.++.| |.
T Consensus 229 ss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~s--lp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gv 306 (1082)
T KOG1410|consen 229 SSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHS--LPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGV 306 (1082)
T ss_pred cccccccccccceecCcHHHHHhcCchHHHHHHHHhcc--CCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1 11 0 112345789999999983 477899999999999988642 344566777655 46
Q ss_pred hhhccccCCCccHHHHHHHHHHHHHHHHHH--HHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHH
Q 002789 283 SRVFGLVSEDGESELVSKVAALLTGYAMEV--LDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360 (881)
Q Consensus 283 ~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~ 360 (881)
..++.+..+-.|.+-...+|+++.-+-..+ .+..+ .+. . ++ .+..+.++-+.-+.|= +-+....-+...
T Consensus 307 k~il~np~~LsD~~nyHeFCRllaRlktNYQL~ELv~-v~~--Y-~e---~irLiAeFTv~SLq~w--efa~nSvyyLlt 377 (1082)
T KOG1410|consen 307 KRILENPQGLSDPANYHEFCRLLARLKTNYQLGELVK-VEC--Y-PE---VIRLIAEFTVTSLQHW--EFAPNSVYYLLT 377 (1082)
T ss_pred HHHHhCCcCCCCcchHHHHHHHHHHHHhhhhhHhhhc-cCC--c-HH---HHHHHHHHHHHHHHhh--hcccchhHHHHH
Confidence 667665544344433344556555443221 11100 111 0 01 1222222222222221 112223457788
Q ss_pred HHHHhccCCCCcH-----HHHHHHHHHHHHHHH-hhc-----cCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 002789 361 YVATMKSLSPLKE-----EQRLHAGQILEVILT-QIR-----YDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVG 429 (881)
Q Consensus 361 ~w~~l~~~~~l~~-----~~~~~l~~Ll~~l~~-km~-----~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~ 429 (881)
+|..+...-|+.. ....+.+.+..+.+. |.. -|++.+ +.- ||.+.. .+.-+.+-.++
T Consensus 378 ~WqRmvaSVPyvk~~~phlLd~y~PeIt~afi~SRl~sV~~ivrd~~d------~PL--dd~~~~----~q~le~l~~ic 445 (1082)
T KOG1410|consen 378 LWQRMVASVPYVKNTEPHLLDTYCPEITKAFITSRLQSVEIIVRDGLD------DPL--DDTGAV----QQQLEQLATIC 445 (1082)
T ss_pred HHHHHHhcCCcccCCChHHHhhhcHHHHHHHHHHHhhhhheecccCCC------Ccc--hhhHHH----HHHHHHhhhhh
Confidence 9987754322211 011222222222211 111 122211 111 121111 12234455566
Q ss_pred hcChhhHHHHHHHHHHHhhccc---------CCCChhhHHHHHH-HHHHhhhcCc-------chhhhc-cchHHHHHHHH
Q 002789 430 RVAPEVTQVFIRNSLANAVTFS---------ADRNVEEVEAALT-LLYALGESMS-------EEAMRT-GAGHLSELVPM 491 (881)
Q Consensus 430 ~~~~~~~l~~i~~~l~~~l~~~---------~~~~w~~~EaaL~-~l~~i~e~~~-------~~~~~~-~~~~l~~ll~~ 491 (881)
+.--+.+-..+.+..++..+++ ++.+-.-.|+-|. +++.+|..+. .+.... ..+....+++.
T Consensus 446 RceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql 525 (1082)
T KOG1410|consen 446 RCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQL 525 (1082)
T ss_pred hhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHH
Confidence 6655555556655565555432 1233334444332 3444554332 111000 01111222221
Q ss_pred --HHhCCCCCCCChhHHHHHHHHHHHhHH-HHhh--------------------cCCChHHHHHHhhcccCCCCCCchhh
Q 002789 492 --LLQTKLPCHSNRLVALVYLETVTRYMK-FIQE--------------------HTQYIPVVLAAFLDERGIHHPNVHVS 548 (881)
Q Consensus 492 --l~~~~~~~~~~p~v~~~~~~~igry~~-~l~~--------------------~~~~L~~vL~~~l~~~gl~~~~~~v~ 548 (881)
++.++.+...+.++-.+++..+.+|-+ |+-. +...|..++..+++....-..++.|-
T Consensus 526 ~nlmdsr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi 605 (1082)
T KOG1410|consen 526 VNLMDSRLPLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVI 605 (1082)
T ss_pred HHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHH
Confidence 334566666666664444444444443 1111 12233333444443333333455677
Q ss_pred hHHHHHHHHHHHHhh--hcc--hhhHHHHHHHhh----hhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccc
Q 002789 549 RRASYLFMRVVKLLK--AKL--VPFIENILQSLQ----DTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEK 620 (881)
Q Consensus 549 ~~A~~~f~~~~~~~~--~~l--~p~~~~il~~l~----~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~ 620 (881)
++.-..|..+.-... +++ .+-+.-++.... +.+... ...-....+..+|+|+|.++.... .+
T Consensus 606 ~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~-------~~~~~~r~RTTFY~al~rLl~~d~---se 675 (1082)
T KOG1410|consen 606 SLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGIN-------IDLQDMRCRTTFYTALTRLLMVDL---SE 675 (1082)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccC-------ccchhhhhHhHHHHHHHHHHhhcc---cc
Confidence 777777777664322 222 122222222210 011111 001124467789999999997632 33
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhhhcC-CchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHH----HHHHHHHHHH
Q 002789 621 QSDYLSSLLTPLCQQVQTMLLDAKMLN-PEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIG----LMFKQTLDVL 695 (881)
Q Consensus 621 ~~~~l~~ll~pl~~~l~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~----~if~~~~~~~ 695 (881)
-...++..|.|+.+.++..++...... .+|+.+.+.- -+.+=+..++-++... -... =+|+..++++
T Consensus 676 de~~fe~fm~PLt~~fe~v~~~~~nn~f~ee~vK~~li--GL~RDLRGiA~A~~tk------tsy~~LFdWmYP~~mpll 747 (1082)
T KOG1410|consen 676 DEDMFERFMLPLTDAFEGVLQVFQNNCFEEEQVKRILI--GLCRDLRGIAFASNTK------TSYQMLFDWMYPEYMPLL 747 (1082)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--HHHHHhhhhhhhhccc------hHHHHHHHHhhhhHHHHH
Confidence 456789999999999987777655431 2233332211 1111111121111111 1112 2355667777
Q ss_pred HHHhhcCCCChhHhhHHHHHHHHHHHh----hCccccc--------cHHHHHH----HHHccCC----------hhhH-H
Q 002789 696 LQILVVFPKVEPLRCKVTSFIHRMVDT----LGASVFP--------YLPKALE----QLLAESE----------PKEM-A 748 (881)
Q Consensus 696 ~~~l~~~~~~~~ir~~~~~~~~~~v~~----lg~~~~p--------~lp~~~~----~ll~~~~----------~~~~-~ 748 (881)
.+..++|.+.+.+..-+..+.+.++.. +..++.. -...++. .++.-.+ .+.. .
T Consensus 748 q~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v 827 (1082)
T KOG1410|consen 748 QRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISV 827 (1082)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCcee
Confidence 778888988877766666676666643 2111111 0111111 1111111 0111 2
Q ss_pred HHHHHHHHHHHHhhcc----h--HHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002789 749 GFLVLLNQLICKFNTL----V--HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDL 822 (881)
Q Consensus 749 ~~L~l~~~li~~~~~~----~--~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~ 822 (881)
+|..+-+.++..|-.- . ..-+++.+..++ .|+.. ...+|+.+++-+.++||.|+..+.+.+.
T Consensus 828 ~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fv----Km~ls--------Ip~sD~l~Y~Klsqsyy~llE~l~qdhm 895 (1082)
T KOG1410|consen 828 CFSILKNALSGNYVNFGVFRLYGDSALDDALQTFV----KMLLS--------IPHSDLLSYRKLSQSYYNLLEVLTQDHM 895 (1082)
T ss_pred hHHHHHHHhhcCccccceeeeeCchHHHHHHHHHH----HHHhc--------CCHHHHHhHHHHHHHHhhHHHHHHhccc
Confidence 3333333333332211 0 023444444444 33322 2234677899999999999999999887
Q ss_pred ccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhh
Q 002789 823 SSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCY 859 (881)
Q Consensus 823 ~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~ 859 (881)
+-+. .-..+.+-.++.++-.| ...=|..+.-.|.
T Consensus 896 ~Fi~--nL~~~vfm~ll~Si~sG-Lt~lDt~v~sscc 929 (1082)
T KOG1410|consen 896 PFIT--NLEPDVFMYLLRSISSG-LTSLDTIVSSSCC 929 (1082)
T ss_pred hhhh--cCcHHHHHHHHHHHHhc-cchhhHHHHhHHH
Confidence 6553 11233455566655544 3334555555444
No 13
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.87 E-value=2.6e-21 Score=185.07 Aligned_cols=147 Identities=32% Similarity=0.589 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHH
Q 002789 107 PAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQ 186 (881)
Q Consensus 107 ~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~ 186 (881)
|++||+|+|.+++.+++++||++||+|++++++.+++++.+++++|++|+.++||+.+. .+......|+..+++.|++
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~--~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDF--RRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTS--HCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999899999999999999999873 2356788999999999999
Q ss_pred HhHHHHHHHHHHHHHhhccCC-HHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHH
Q 002789 187 QCVEQIVRAWYDIVSMYRSSD-FEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCV 260 (881)
Q Consensus 187 ~~~~~i~~~~~~iL~~~~~~~-~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l 260 (881)
+ .+.+++++.++++...... +++...+|+|+++|++|++++.+.++++++.++++|+ +++++.+|++||
T Consensus 79 ~-~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~----~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 N-SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQ----SPELREAAAECL 148 (148)
T ss_dssp H-HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTT----SCCCHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcC----CHHHHHHHHHhC
Confidence 9 9999999999999754333 8899999999999999999999999999999999998 889999999997
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.81 E-value=9.4e-15 Score=163.03 Aligned_cols=699 Identities=17% Similarity=0.172 Sum_probs=346.2
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccC-ChhHHHHHHHHHHHHHHHhhccC----------
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTS---------- 73 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vrffa~~~L~~~I~~~w~~---------- 73 (881)
+++|.-......++|+..|.+|+..|.++..+++.-.....+..+. .+...|.+|+..|++.|.++|..
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 4444333322224699999999999999999887555556666554 45899999999999999999974
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcC-CchhHHHHH
Q 002789 74 MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK-GSMVIDMFC 152 (881)
Q Consensus 74 l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~-~~~~~~~~L 152 (881)
.+.+.|..||+.+++.+... ...+|+..+.+++.|+.-+||+.||+.++-++.++++ +.++....+
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~s-------------n~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am 149 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDDS-------------NSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAM 149 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhcc-------------ccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHH
Confidence 45667888999888877732 5778899999999999999999999999999999984 566778899
Q ss_pred HHHHHHHHHhhhcC---CCCChh-HHHHHHHH----HHHHHHHhH-HHHHHHHHHHHHhhccCC-HHHHHHHHHHhcccc
Q 002789 153 RVLNSLDDELISLD---YPRTAD-ELTVAARI----KDAMRQQCV-EQIVRAWYDIVSMYRSSD-FEVCTGVLDCMRRYI 222 (881)
Q Consensus 153 ~iL~~l~eEv~~~~---~~~~~~-~~~r~~~l----k~~~~~~~~-~~i~~~~~~iL~~~~~~~-~~l~~~~L~~l~~~i 222 (881)
++|..+..|+.+.. .+--.. +..|...+ .+.++...+ ..++..|...++.+.... .......-.|+.
T Consensus 150 ~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~--- 226 (1005)
T KOG2274|consen 150 RVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILN--- 226 (1005)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---
Confidence 99999988885321 110000 00010000 011111101 112222222222211111 001111111111
Q ss_pred cccccccccccccHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhhhhhhccccCCCccHHHHHHH
Q 002789 223 SWIDINLIANDAFIPLLFELILAD-GLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKV 301 (881)
Q Consensus 223 ~wi~~~~~~~~~~l~~l~~~L~~~-~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~l~~i~~~~~~~~d~~~~~~l 301 (881)
.+++.+-+.+... ...-.++...+.|+..++.+ | |..+.... .++++ -....+
T Consensus 227 -----------~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~n-f-p~~~~~~~-----~~~~~--------~vw~~~ 280 (1005)
T KOG2274|consen 227 -----------QFMDILEHPLQRNDGSDFSLRMEILKCLTQLVEN-F-PSLINPFM-----MGMFS--------IVWQTL 280 (1005)
T ss_pred -----------HHHHHHhhhhcccccchHHHHHHHHHHHHHHHHh-h-HHhhhHHH-----Hhhhh--------HHHHHH
Confidence 1222222222210 01123444555555554432 1 10000000 00000 000000
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 002789 302 AALLTGYAMEVLDCVKRLNA-ENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAG 380 (881)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~ 380 (881)
.+...... .+.....+. .+++...-+....+- +....+++|...+....+-...+ ...++
T Consensus 281 ~~~~~~yi---r~~V~~~e~~~~~~~dsd~e~~~~~------------~l~i~i~eF~s~i~t~~~~~~ti----~~~l~ 341 (1005)
T KOG2274|consen 281 EKILAVYV---RESVNGTEDSYDARYDSDPEEKSVE------------TLVIQIVEFLSTIVTNRFLSKTI----KKNLP 341 (1005)
T ss_pred HHHHhhhh---hhhccccccCcccccCCchhhhChH------------HhhhhHHHHHHHHHHHHHHHHHh----hhhhH
Confidence 00000000 000000000 000000000000000 00112333333333221111111 11233
Q ss_pred HHHHHHHHhhccCcccccccc------cCCCCChHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcc----
Q 002789 381 QILEVILTQIRYDPMYRNNLD------VLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTF---- 450 (881)
Q Consensus 381 ~Ll~~l~~km~~p~~~~~~~~------~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~---- 450 (881)
.++..++.-++-+++..++|. +.++++. ..-|-+.++.+..+..-.+...+..+.+...+.++.
T Consensus 342 ~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~------~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at 415 (1005)
T KOG2274|consen 342 ELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG------YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQAT 415 (1005)
T ss_pred HHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC------chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 333333333343443221221 0111111 234555666666665555555555555543333321
Q ss_pred ---cCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCCh
Q 002789 451 ---SADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYI 527 (881)
Q Consensus 451 ---~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L 527 (881)
.+...|...|+.+..+..++++-... +.+..+...+.. ++-...-|.....++.++++|++-+..+|+++
T Consensus 416 ~~~~~~~~wk~qea~l~a~~~~~~~~~~d------d~l~~l~~~~~~-~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~ 488 (1005)
T KOG2274|consen 416 YLFNNESWWKIQEALLVAAESVRIDDAND------DKLIELTIMIDN-GLVYQESPFLLLRAFLTISKFSSSTVINPQLL 488 (1005)
T ss_pred HHhcchHHHHHHHHHHHHHhhcccCcchH------HHHHHHHHHHHh-hcccccCHHHHHHHHHHHHHHHhhhccchhHH
Confidence 13456999999988888887433222 233333322221 22233446654477789999988888889888
Q ss_pred HHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhc-chhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHH
Q 002789 528 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK-LVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEA 606 (881)
Q Consensus 528 ~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~-l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Ea 606 (881)
...|+.-+...+++.+. -++.+|+.+|...| +.+ +.|+.+.|++.+.++.... +.+-...++|+
T Consensus 489 ~~fl~~~v~~l~~~~~~-~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~-----------s~evl~llmE~ 553 (1005)
T KOG2274|consen 489 QHFLNATVNALTMDVPP-PVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKS-----------SDEVLVLLMEA 553 (1005)
T ss_pred HHHHHHHHHhhccCCCC-chhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccc-----------cHHHHHHHHHH
Confidence 88888877656666554 47788777777666 544 5789999999887765543 34456679999
Q ss_pred HHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH----------------HHHHHHH------
Q 002789 607 IGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN----------------IQQIIMA------ 664 (881)
Q Consensus 607 ig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~----------------~~~~~~~------ 664 (881)
++.+++. ++ ++..-++..+.|+...+-......+... ...+.+.. +-.++.+
T Consensus 554 Ls~vv~~---dp-ef~as~~skI~P~~i~lF~k~s~DP~V~--~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~ 627 (1005)
T KOG2274|consen 554 LSSVVKL---DP-EFAASMESKICPLTINLFLKYSEDPQVA--SLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNAD 627 (1005)
T ss_pred HHHHhcc---Ch-hhhhhhhcchhHHHHHHHHHhcCCchHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCccc
Confidence 9998875 22 2344445555554333211100000000 00000000 1111111
Q ss_pred -------------HHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHh---------
Q 002789 665 -------------INALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT--------- 722 (881)
Q Consensus 665 -------------~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~--------- 722 (881)
++.+-++=++. . ...+...+.+.+.++. .+.++.......-.+++..+..
T Consensus 628 ~~~~~l~~~aidvLttvvr~tp~p---L----~~~l~~~~FpaVak~t-lHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~ 699 (1005)
T KOG2274|consen 628 KAPAGLCAIAIDVLTTVLRNTPSP---L----PNLLICYAFPAVAKIT-LHSDDHETLQNATECLRALISVTLEQLLTWH 699 (1005)
T ss_pred ccCchhhHHHHHHHHHHHhcCCCC---c----cHHHHHHHhHHhHhhe-eecCChHHHHhHHHHHHHHHhcCHHHHHhhc
Confidence 11111111111 0 1233344444444444 2334434433455555555543
Q ss_pred hCccc-cccHHHHHHHHHccCChhhHHHHH--HHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHH
Q 002789 723 LGASV-FPYLPKALEQLLAESEPKEMAGFL--VLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEE 799 (881)
Q Consensus 723 lg~~~-~p~lp~~~~~ll~~~~~~~~~~~L--~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~ 799 (881)
.++.. +-|+-.++..+|. .+..+..++. .++.+++.++++++.+.+++++..++.+. ++.
T Consensus 700 ~e~g~~~~yImqV~sqLLd-p~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrm----q~a------------ 762 (1005)
T KOG2274|consen 700 DEPGHNLWYIMQVLSQLLD-PETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRL----QQA------------ 762 (1005)
T ss_pred cCCCccHHHHHHHHHHHcC-CccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHH----HHh------------
Confidence 11111 3455555555443 3334434433 48889999999999999999998888553 221
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccc
Q 002789 800 IREVQELQRTLYTFLHVIATHDLSSV 825 (881)
Q Consensus 800 ~~~~~dl~~~~~~ll~~i~~~~~~~~ 825 (881)
+.+-+.++....+..++...+..+
T Consensus 763 --e~lsviQsLi~VfahL~~t~~~~~ 786 (1005)
T KOG2274|consen 763 --ETLSVIQSLIMVFAHLVHTDLDQL 786 (1005)
T ss_pred --hhHHHHHHHHHHHHHHhhCCHHHH
Confidence 345566666666666655554433
No 15
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.2e-12 Score=142.23 Aligned_cols=581 Identities=14% Similarity=0.126 Sum_probs=296.9
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCCh-hHHHHHHHHHHHHHHHhhcc-----CCCHH
Q 002789 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNI-VQVQFWCLQTLSEVVRVKYT-----SMSSE 77 (881)
Q Consensus 4 l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~-~~vrffa~~~L~~~I~~~w~-----~l~~e 77 (881)
+.|.++.+.+| |...++.|++.|++-+..|..+.....++.+.++ ..||..|..-+||-|.+.|. ++|+|
T Consensus 2 vvq~Lq~Ats~----d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~E 77 (978)
T KOG1993|consen 2 VVQVLQQATSQ----DHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPE 77 (978)
T ss_pred HHHHHHHhcCC----CcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHH
Confidence 45666777765 7779999999999999999999998888876544 89999999999999999996 59999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC--chhHHHHHHHH
Q 002789 78 ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG--SMVIDMFCRVL 155 (881)
Q Consensus 78 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~L~iL 155 (881)
+|..||..++...... ..-+-.+.|.+++.|+.-+||..||+.|+++.+.+++. ..-.....++|
T Consensus 78 EK~~iR~~Ll~~~~E~-------------~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiL 144 (978)
T KOG1993|consen 78 EKDFIRCNLLLHSDEE-------------NNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRIL 144 (978)
T ss_pred HHHHHHHHHHHhcccc-------------hhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHH
Confidence 9999999999987643 44566899999999999999999999999999999864 11112233444
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhccccccccccccccccc
Q 002789 156 NSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAF 235 (881)
Q Consensus 156 ~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~ 235 (881)
..+.--+. ....+|-..=+.+|.+- .+.|++.+.-++-+. +...-+...++- .
T Consensus 145 i~l~~ilK-------~Lat~RL~a~rk~F~el-~~~I~~~l~~~l~s~------lt~~~lq~~ss~---------~---- 197 (978)
T KOG1993|consen 145 ITLHHILK-------ALATKRLLADRKAFYEL-APEILTILAPILWSS------LTMMFLQSVSSI---------K---- 197 (978)
T ss_pred HHHHHHHH-------HHHHhHHhhhhHHHHHH-hHHHHHHHHHHHhcc------hHHHHHHHhhcc---------h----
Confidence 33332221 11223444445566666 777877655544320 000001110000 0
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHH----Hhhh--hhhccccCCCc-------cHHHHHHHH
Q 002789 236 IPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQ----TLQI--SRVFGLVSEDG-------ESELVSKVA 302 (881)
Q Consensus 236 l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~----~l~l--~~i~~~~~~~~-------d~~~~~~l~ 302 (881)
=..+.+.++ ..-.++..+-.++-.|...+.|.++.+ .+.+ ......+.... =+.++..++
T Consensus 198 ea~~LsalQ-------~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~ 270 (978)
T KOG1993|consen 198 EATLLSALQ-------RSYLTLKVLRRLVVFGFQNPSKSEFFERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLM 270 (978)
T ss_pred hHHHHHHHH-------HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHH
Confidence 000111111 222233333334433432112212221 1111 00000000000 012333333
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcch---hhhHH---HHHHHHHHHhcc------C--
Q 002789 303 ALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDT---TFSIV---QFLSGYVATMKS------L-- 368 (881)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v---~~~~~---~~~~~~w~~l~~------~-- 368 (881)
+....+...+--...... .....+++......++++.+ +.... .|...=...+|+ .
T Consensus 271 K~l~~l~~rhpfsF~~~~----------~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~ 340 (978)
T KOG1993|consen 271 KVLAFLFNRHPFSFSFYS----------PCPVKLEFSIDYIFDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKF 340 (978)
T ss_pred HHHHHHhcCCCccccccc----------ccceeeehhhhhhhcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccc
Confidence 333333211100000000 00001111111111110000 00000 000000000010 0
Q ss_pred -----------CCCcHH----H-----HHHHHHHHHHHHHhhcc--CcccccccccCCC---CChHHH-HH-HHHHHHHH
Q 002789 369 -----------SPLKEE----Q-----RLHAGQILEVILTQIRY--DPMYRNNLDVLDK---IGIEEE-DR-MVEYRKDL 421 (881)
Q Consensus 369 -----------~~l~~~----~-----~~~l~~Ll~~l~~km~~--p~~~~~~~~~~~~---~~eed~-~~-f~~~R~~~ 421 (881)
+...+. + .+-+..|.+.++.+.-. ++|.++ |.+| +..|+. .+ -...|-+.
T Consensus 341 s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe---W~~dPE~~~~Eq~~~dwey~lRPCa 417 (978)
T KOG1993|consen 341 SLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE---WTQDPEGWVLEQSGGDWEYNLRPCA 417 (978)
T ss_pred cccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH---HhcChHHhhhhcccccceeccchhH
Confidence 000000 0 23466677777766532 444331 1111 111110 01 12478888
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHH--HH-HHhhhcCcchhhhccchHHHHHHH-HHHhCCC
Q 002789 422 LVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALT--LL-YALGESMSEEAMRTGAGHLSELVP-MLLQTKL 497 (881)
Q Consensus 422 ~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~--~l-~~i~e~~~~~~~~~~~~~l~~ll~-~l~~~~~ 497 (881)
..++..+..-..+...+.+..++.++.+..+.+.=++.-|.|. ++ .++|-+..+-. ..-.+...++ .++.+..
T Consensus 418 E~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~---~~~dF~~Wl~~~llpEl~ 494 (978)
T KOG1993|consen 418 EKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELS---NILDFDKWLQEALLPELA 494 (978)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHhhCHHhh
Confidence 8888888877778788888888876654333333344555443 22 23443322211 0112233222 1221111
Q ss_pred CCCCChhH-HHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCC-CchhhhHHHHHHHHHHHHh---hhcchhhHHH
Q 002789 498 PCHSNRLV-ALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHP-NVHVSRRASYLFMRVVKLL---KAKLVPFIEN 572 (881)
Q Consensus 498 ~~~~~p~v-~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~-~~~v~~~A~~~f~~~~~~~---~~~l~p~~~~ 572 (881)
...++.++ |....+++|+.... +.-.+.-+.+-.+|+ +-+.+. +.-|+-.++.+++-.+.+- +..+.||++.
T Consensus 495 ~~~~~~RiiRRRVa~ilg~Wvsv-q~~~e~k~l~Y~a~l--nLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~len 571 (978)
T KOG1993|consen 495 NDHGNSRIIRRRVAWILGQWVSV-QQKLELKPLLYCAFL--NLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLEN 571 (978)
T ss_pred hcccchhHHHHHHHHHHhhhhhe-echHhHHHHHHHHHH--HhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHH
Confidence 13344444 55555588876552 111223333333444 223333 5578889999999999874 4778999999
Q ss_pred HHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhh
Q 002789 573 ILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEEST 652 (881)
Q Consensus 573 il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~ 652 (881)
+...+..++.... ..+.+.++...++.+|..++ +....+...+++-+-.-|+..- ++..
T Consensus 572 lf~~lfkll~~~~----------e~Dtk~~VL~~ls~lI~r~~---e~I~P~~~~ivq~lp~LWe~s~--------~e~l 630 (978)
T KOG1993|consen 572 LFVLLFKLLKAVE----------ECDTKTSVLNLLSTLIERVS---EHIAPYASTIVQYLPLLWEESE--------EEPL 630 (978)
T ss_pred HHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHhhhc--------cCcH
Confidence 9999988887553 57889999999999987643 2333455555554444444432 2221
Q ss_pred h--HHHH-HHHHHHHHHHhhcccCCC
Q 002789 653 A--KFAN-IQQIIMAINALSKGFNER 675 (881)
Q Consensus 653 ~--~~~~-~~~~~~~~~~l~k~f~~~ 675 (881)
- .+.. +++...++|+-++.+.+.
T Consensus 631 Lr~alL~~L~~lV~alg~qS~~~~~f 656 (978)
T KOG1993|consen 631 LRCALLATLRNLVNALGAQSFEFYPF 656 (978)
T ss_pred HHHHHHHHHHHHHHHhccCCccchHH
Confidence 1 1222 666666777666666543
No 16
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.1e-12 Score=137.22 Aligned_cols=543 Identities=13% Similarity=0.116 Sum_probs=279.6
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccC-ChhHHHHHHHHHHHHHHHhhccC-----CCH
Q 002789 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTS-----MSS 76 (881)
Q Consensus 3 ~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vrffa~~~L~~~I~~~w~~-----l~~ 76 (881)
++.|...+..+ +|+..|..|+..|.++++.|..-..|.+++... -+..||.-|+.-++++|.+.|.+ .++
T Consensus 4 ellqcf~qTld----ada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~ 79 (970)
T COG5656 4 ELLQCFLQTLD----ADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKA 79 (970)
T ss_pred HHHHHHHHHhc----cCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCC
Confidence 45666666665 489999999999999999999999999999875 45899999999999999999987 455
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcC-CCChhhHHHHHHhhcCCch-hHHHHHHH
Q 002789 77 EERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYP-LIWSSVFVDFLPQLNKGSM-VIDMFCRV 154 (881)
Q Consensus 77 e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p-~~Wp~~i~~l~~~~~~~~~-~~~~~L~i 154 (881)
+++...|..+.+-+...+. .+ |...|+.+..+++.|+..+|| +.|+ +++...+++.+++. ++-..|..
T Consensus 80 Dek~e~K~~lienil~v~l--------~s-p~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlc 149 (970)
T COG5656 80 DEKSEAKKYLIENILDVFL--------YS-PEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLC 149 (970)
T ss_pred cccHHHHHHHHHHHHHHHh--------cC-CchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHH
Confidence 6777777777777766642 11 677888999999999999999 6899 99999999887653 44444554
Q ss_pred HHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccc
Q 002789 155 LNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDA 234 (881)
Q Consensus 155 L~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~ 234 (881)
+..+ ... .|=+... ++..+-..+.+- +|.+.+.-.++..+-+-+..++....|+++++++-. +++.
T Consensus 150 l~el----fka--yRwk~nd-eq~di~~li~al-fpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~-~LP~----- 215 (970)
T COG5656 150 LEEL----FKA--YRWKYND-EQVDILMLITAL-FPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY-SLPD----- 215 (970)
T ss_pred HHHH----HHH--Hhhhccc-hHhhHHHHHHHh-hHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh-hCCH-----
Confidence 4333 322 0111111 222222222222 444444444444321112457777888888765432 2221
Q ss_pred cHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCC-------Chhhh-------HHHHHHhhhhhhccccCCCccHHHHHH
Q 002789 235 FIPLLFELILADGLPEQFRGAAVGCVLAVVSKRM-------DPQSK-------LNLLQTLQISRVFGLVSEDGESELVSK 300 (881)
Q Consensus 235 ~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~-------~~~~k-------~~ll~~l~l~~i~~~~~~~~d~~~~~~ 300 (881)
.|. .++...........|+++.. +|+.+ -+-...-++...++++....-..-.+.
T Consensus 216 -------~ls----a~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~ 284 (970)
T COG5656 216 -------FLS----AIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLS 284 (970)
T ss_pred -------HHc----cchhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 111 22222233333333333321 12211 111111123333333211000000011
Q ss_pred HHHHHHHHHHHHHHH-Hhhhcc---cchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHH
Q 002789 301 VAALLTGYAMEVLDC-VKRLNA---ENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQR 376 (881)
Q Consensus 301 l~~l~~~~~~~~~~~-~~~~~~---~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~ 376 (881)
+...++++...+++. .++++. ++.+ +.+..|.++..= + +.+.. .=.+|..+ .
T Consensus 285 f~~~f~t~vp~il~tffkqie~wgqgqLW---------lsd~~LYfi~~F---v-e~cv~-~d~tw~l~----------e 340 (970)
T COG5656 285 FYITFMTRVPMILATFFKQIEEWGQGQLW---------LSDIELYFIDFF---V-ELCVD-ADQTWRLM----------E 340 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCee---------cchHHHHHHHHH---H-HHHhh-hHhhHhhh----------c
Confidence 222222232222222 222211 0000 000000000000 0 00000 00133222 2
Q ss_pred HHHHHHHHHHHHhhccCcccccccccCCCCChHHHHHHH--------H-HHHHH--HHHHHHHHhcChhhHHHHHHHHHH
Q 002789 377 LHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMV--------E-YRKDL--LVLLRSVGRVAPEVTQVFIRNSLA 445 (881)
Q Consensus 377 ~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~--------~-~R~~~--~~~l~~i~~~~~~~~l~~i~~~l~ 445 (881)
|++.-++..++--+-.+.+.+. +.+++ |.++|- + +|.++ ..++..+....++.+++-+.+.+.
T Consensus 341 Phlq~ii~~vIfPllc~see~e--ElfEn----Dp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~ 414 (970)
T COG5656 341 PHLQYIISGVIFPLLCLSEEEE--ELFEN----DPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLL 414 (970)
T ss_pred cHHHHHHHhhhhhhcCCChhhH--HHHhc----CHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHH
Confidence 3444444333222222222210 00111 111221 1 22222 344455556677877777777777
Q ss_pred Hhhccc-----CCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCC---CCCCCChhHHHHHHHHHHHhH
Q 002789 446 NAVTFS-----ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTK---LPCHSNRLVALVYLETVTRYM 517 (881)
Q Consensus 446 ~~l~~~-----~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~---~~~~~~p~v~~~~~~~igry~ 517 (881)
..+.++ +-.+-+..|.|++.+.++-+.+... +.+..+|...+-.. ....+.-.++...|+++++|.
T Consensus 415 sil~qsaa~psn~dnarq~egalr~lasi~s~itk~------sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~e 488 (970)
T COG5656 415 SILGQSAATPSNIDNARQAEGALRLLASIKSFITKM------SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIE 488 (970)
T ss_pred HHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccC------chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHH
Confidence 666433 2245778999999999988855433 23333333322100 112233345677888999997
Q ss_pred HHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhh--hcchhhHHHHHHHhhhhhhcccccCcccccCC
Q 002789 518 KFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK--AKLVPFIENILQSLQDTIARFTSMNYASKELS 595 (881)
Q Consensus 518 ~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~--~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~ 595 (881)
.-++... .+..+.+... ..+.+++-.|+--|+.|+.-|..+-. ..+..|++..++++-.+-...
T Consensus 489 eDfkd~~-ill~aye~t~--ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~f----------- 554 (970)
T COG5656 489 EDFKDNG-ILLEAYENTH--NCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTF----------- 554 (970)
T ss_pred Hhcccch-HHHHHHHHHH--HHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccc-----------
Confidence 6665432 3333333332 23445666788889999988876544 456678999999885533322
Q ss_pred CccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHH
Q 002789 596 GSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTML 640 (881)
Q Consensus 596 ~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~ 640 (881)
..+-...++|++ ++.- +++-..+-..++..+.+++-+..
T Consensus 555 eiD~LS~vMe~f---Ve~f---seELspfa~eLa~~Lv~qFlkia 593 (970)
T COG5656 555 EIDPLSMVMESF---VEYF---SEELSPFAPELAGSLVRQFLKIA 593 (970)
T ss_pred cchHHHHHHHHH---HHHh---HHhhchhHHHHHHHHHHHHHHHH
Confidence 234445566664 3321 13334455555555555444333
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.1e-08 Score=119.00 Aligned_cols=218 Identities=15% Similarity=0.206 Sum_probs=140.4
Q ss_pred ChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHH-HHHHhhhhhhcccccCcccccCCCccchhHHH
Q 002789 526 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIEN-ILQSLQDTIARFTSMNYASKELSGSEDGSHIF 604 (881)
Q Consensus 526 ~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~-il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~ 604 (881)
.|++|+...+ .|+.+++|+||.+||.++-.+..+..+.+..+..+ ++..+-..+. +.+....-.
T Consensus 386 ~l~~Il~~Vl--~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld-------------~~~~~rV~a 450 (1075)
T KOG2171|consen 386 NLPKILPIVL--NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD-------------STQNVRVQA 450 (1075)
T ss_pred HHHHHHHHHH--hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc-------------ccCchHHHH
Confidence 5788888887 78999999999999999999998887777543222 2223322222 122323333
Q ss_pred HHHHHHhcc-CCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCccc
Q 002789 605 EAIGLLIGM-EDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPA 683 (881)
Q Consensus 605 Eaig~li~~-~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~ 683 (881)
.|.+.++.. ..-+.+.-..|+..+|++.+..+.+. +.. . + -.+...++++++..-....
T Consensus 451 hAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~--------~~~--~-v--~e~vvtaIasvA~AA~~~F------- 510 (1075)
T KOG2171|consen 451 HAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS--------SKP--Y-V--QEQAVTAIASVADAAQEKF------- 510 (1075)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC--------Cch--h-H--HHHHHHHHHHHHHHHhhhh-------
Confidence 344444432 11234555677777777644443221 101 1 1 2233344454444332222
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CChhHhhHHHHHHHHHHHhhC-ccccccHHHHHHHHHccC------ChhhHHHHHHHH
Q 002789 684 IGLMFKQTLDVLLQILVVFP--KVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAES------EPKEMAGFLVLL 754 (881)
Q Consensus 684 ~~~if~~~~~~~~~~l~~~~--~~~~ir~~~~~~~~~~v~~lg-~~~~p~lp~~~~~ll~~~------~~~~~~~~L~l~ 754 (881)
.+-|.++|+.+...+.+-. +...+|..+..++.-+-...| +.|.|+...++..++... +.+--+..+.+.
T Consensus 511 -~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~w 589 (1075)
T KOG2171|consen 511 -IPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFW 589 (1075)
T ss_pred -HhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHH
Confidence 6678999999998887655 445677777777777777788 678899999988887642 112225667889
Q ss_pred HHHHHHhhcchHHHhhhhHHHHHHH
Q 002789 755 NQLICKFNTLVHDILDEVFPAIAGR 779 (881)
Q Consensus 755 ~~li~~~~~~~~~~l~~ll~~l~~~ 779 (881)
+.+++.+|.++.|+++.+++|++..
T Consensus 590 armc~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 590 ARMCRILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHHHHhchhhHhHHHHHhHHHHHh
Confidence 9999999999999999999999844
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.29 E-value=1.9e-07 Score=106.10 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHHhcCcchHHHHHHHhccC-ChhHHHHHHHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHHH
Q 002789 18 IDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTS-----MSSEERNLIRESVFSMVC 91 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vrffa~~~L~~~I~~~w~~-----l~~e~~~~lr~~ll~~l~ 91 (881)
.+|..++.|++-|++.+..++.-.....+..+. .+-.+|.-|+.-+++.|.++|.+ +.++++..||..++..+.
T Consensus 16 ~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii 95 (947)
T COG5657 16 PDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLII 95 (947)
T ss_pred CCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHH
Confidence 577889999999999999998776666666654 45899999999999999999975 666777799999999998
Q ss_pred hhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHH
Q 002789 92 CELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDD 160 (881)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~e 160 (881)
+. ++ .-.| +.+.+++.|+.-+||++||+.++|+++.++..+ ......|+.+..+-.
T Consensus 96 ~s----------~n-~l~i--q~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk 152 (947)
T COG5657 96 SS----------SN-QLQI--QNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFK 152 (947)
T ss_pred cc----------cc-hHHH--HHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 65 11 3334 889999999999999999999999999998843 233344554444433
No 19
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.7e-06 Score=90.64 Aligned_cols=362 Identities=14% Similarity=0.180 Sum_probs=219.0
Q ss_pred CChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHh----hc----C-
Q 002789 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ----EH----T- 524 (881)
Q Consensus 454 ~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~----~~----~- 524 (881)
.-|-. +++--.++.+++.+++... ....++.+++.++. .-.++|+|+...+|..-.+++-.. .+ |
T Consensus 419 sl~Vk-dTaAwtlgrI~d~l~e~~~--n~~~l~~~l~~l~~---gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 419 SLWVK-DTAAWTLGRIADFLPEAII--NQELLQSKLSALLE---GLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred hhhhc-chHHHHHHHHHhhchhhcc--cHhhhhHHHHHHHH---HhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 44554 6666668888888774321 34456666776664 135788987777777666554332 12 1
Q ss_pred -CChHHHHHHhhcccC-CCCCCchhhhHHHHHHHHHHHHhhhcch----hhHHHHHHHhhhhhhcccccCcccccCCCcc
Q 002789 525 -QYIPVVLAAFLDERG-IHHPNVHVSRRASYLFMRVVKLLKAKLV----PFIENILQSLQDTIARFTSMNYASKELSGSE 598 (881)
Q Consensus 525 -~~L~~vL~~~l~~~g-l~~~~~~v~~~A~~~f~~~~~~~~~~l~----p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~ 598 (881)
.|.+.++..++.... .+....+.|..|..++..+++.|.+... .....++..+.+.++... ++.+
T Consensus 493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~---------l~~~ 563 (859)
T KOG1241|consen 493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQI---------LSLA 563 (859)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccHh
Confidence 245666777663211 2223447899999999999988876554 456677777777766211 1221
Q ss_pred -------chhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcc
Q 002789 599 -------DGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKG 671 (881)
Q Consensus 599 -------~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~ 671 (881)
-|-.|.-.++.++...+ ..+.++.+.+|.-+++.++. .++..-.|+ .+..+. ..+.++|++
T Consensus 564 dr~q~~eLQs~Lc~~Lq~i~rk~~---~~~~~~~d~iM~lflri~~s----~~s~~v~e~--a~laV~---tl~~~Lg~~ 631 (859)
T KOG1241|consen 564 DRAQLNELQSLLCNTLQSIIRKVG---SDIREVSDQIMGLFLRIFES----KRSAVVHEE--AFLAVS---TLAESLGKG 631 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcc---ccchhHHHHHHHHHHHHHcC----CccccchHH--HHHHHH---HHHHHHhHh
Confidence 23345556777777754 26778899999998888777 122211122 122233 345788899
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCCh----hhH
Q 002789 672 FNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP----KEM 747 (881)
Q Consensus 672 f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~----~~~ 747 (881)
|..+ .+.|.. .+...++++.+ ..|+.++--+..++.++|+.++.||-..++..|+..... +++
T Consensus 632 F~ky---------m~~f~p---yL~~gL~n~~e-~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~v 698 (859)
T KOG1241|consen 632 FAKY---------MPAFKP---YLLMGLSNFQE-YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNV 698 (859)
T ss_pred HHHH---------HHHHHH---HHHHHhhcchH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccc
Confidence 9665 344443 44455655544 357778889999999999999999999999999887643 222
Q ss_pred -HHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHhc---CC
Q 002789 748 -AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREV-QELQRTLYTFLHVIATH---DL 822 (881)
Q Consensus 748 -~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~dl~~~~~~ll~~i~~~---~~ 822 (881)
+-+|+..+.+....|.++.++++.++. +++..-. ...+ .+.+++.+| -++|++-++....|+.. ..
T Consensus 699 KP~IlS~FgDIAlaIg~~F~~Yl~~vm~-llq~as~-~~~d-------~~~~~~~dYvd~LRe~~leay~gi~qglk~~~ 769 (859)
T KOG1241|consen 699 KPAILSVFGDIALAIGADFEPYLEMVMP-LLQQASS-VQTD-------PADDSMVDYVDELREGILEAYTGIIQGLKTHA 769 (859)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHh-ccCC-------CCcccHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 678999999999999999999887764 4433321 1111 122233343 45777777766666542 11
Q ss_pred ccccccCCCcCChHHHHHHHHHhhc--CCCCccchhHhhHHHHHHHHhhhh
Q 002789 823 SSVFLSPKSRGYLDPIMQLLLYTSC--NHKDYLVRKVCYFLGFFSTLHLGF 871 (881)
Q Consensus 823 ~~~l~s~~~~~~l~~~l~~~~~~~~--~~~d~~~~k~~~~~~~~~~~~~~~ 871 (881)
...+ .+|+++.|++-+-+-+. +++|....-++ |++-.+.+-|
T Consensus 770 ~~~~----~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~---GlIgDL~~~f 813 (859)
T KOG1241|consen 770 DVML----VQPYVPHIISFIDRIAAEPDVSEALHAAAL---GLIGDLATMF 813 (859)
T ss_pred chhh----hhcchHHHHHHHHHHhcCcccchHHHHHHH---HHHHHHHHHc
Confidence 1111 25677777755543333 23333333333 4555444433
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2e-07 Score=101.83 Aligned_cols=429 Identities=16% Similarity=0.217 Sum_probs=238.2
Q ss_pred HHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhccCcccccccccCCCCChHHH
Q 002789 332 LNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEE 411 (881)
Q Consensus 332 l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~ 411 (881)
++.++|-+++++.|++..++...+.-+..|.-. .++...-.+.+.++.++... +|++
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~------~~qal~~~iD~Fle~lFala-------------nD~~---- 228 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII------QTQALYVHIDKFLEILFALA-------------NDED---- 228 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeec------CcHHHHHHHHHHHHHHHHHc-------------cCCC----
Confidence 567899999999999888876665444433211 11122233444444444322 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCC-hhhHHHHHHHHHHhhhc-CcchhhhccchHHHHHH
Q 002789 412 DRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRN-VEEVEAALTLLYALGES-MSEEAMRTGAGHLSELV 489 (881)
Q Consensus 412 ~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~-w~~~EaaL~~l~~i~e~-~~~~~~~~~~~~l~~ll 489 (881)
-+.||.+...+.++..+.|+...+++.+.++-.+......+ =-.+||+-|-+ +++|. +..+. ..+++..++
T Consensus 229 ---~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwl-a~aeqpi~~~~---L~p~l~kli 301 (885)
T KOG2023|consen 229 ---PEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL-ALAEQPICKEV---LQPYLDKLI 301 (885)
T ss_pred ---HHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHH-HHhcCcCcHHH---HHHHHHHHH
Confidence 13899999999999999999999999998887775321111 13577776533 56663 33333 457777777
Q ss_pred HHHHhCCCCCCCC------------------------------------------------------hhHHHHHHHHHHH
Q 002789 490 PMLLQTKLPCHSN------------------------------------------------------RLVALVYLETVTR 515 (881)
Q Consensus 490 ~~l~~~~~~~~~~------------------------------------------------------p~v~~~~~~~igr 515 (881)
+.|++.+..++.+ --+|.|.--.++-
T Consensus 302 PvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDV 381 (885)
T KOG2023|consen 302 PVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDV 381 (885)
T ss_pred HHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHH
Confidence 7776432211111 1122211113444
Q ss_pred hHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccC---c---
Q 002789 516 YMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMN---Y--- 589 (881)
Q Consensus 516 y~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~---~--- 589 (881)
.+..|.. +.|+.++. ++... +.+..=.||+++.-++-.+++.|-+.+.||+++++..+.+++.....+- +
T Consensus 382 Lanvf~~--elL~~l~P-lLk~~-L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWT 457 (885)
T KOG2023|consen 382 LANVFGD--ELLPILLP-LLKEH-LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWT 457 (885)
T ss_pred HHHhhHH--HHHHHHHH-HHHHH-cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeee
Confidence 4444433 33444433 22211 3334447999999999999999999999999999999988887553210 0
Q ss_pred ---ccccCCC------------------ccchhHHHHHHHHHhccCCC-CccchHHHHHHhhHHHHHHHHHHHHhhhhcC
Q 002789 590 ---ASKELSG------------------SEDGSHIFEAIGLLIGMEDV-PPEKQSDYLSSLLTPLCQQVQTMLLDAKMLN 647 (881)
Q Consensus 590 ---~~~~~~~------------------~~~~~~l~Eaig~li~~~~~-~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~ 647 (881)
..+-.+. -+....+-||..+-...... ..++-..|++.++.-+.-.++..-.+
T Consensus 458 LsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~K----- 532 (885)
T KOG2023|consen 458 LSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKK----- 532 (885)
T ss_pred HhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhc-----
Confidence 0000000 12223344443322211110 11234456655555544444333211
Q ss_pred CchhhhHHHHHHHHHHHHH----HhhcccCCCCCCCCcccHHHHHHH-HHHHHHHHhhcCC-CChhHhhHHHHHHHHHHH
Q 002789 648 PEESTAKFANIQQIIMAIN----ALSKGFNERLVTSSRPAIGLMFKQ-TLDVLLQILVVFP-KVEPLRCKVTSFIHRMVD 721 (881)
Q Consensus 648 ~~e~~~~~~~~~~~~~~~~----~l~k~f~~~~~~~~~~~~~~if~~-~~~~~~~~l~~~~-~~~~ir~~~~~~~~~~v~ 721 (881)
+ +..+--+++ ++|..+... .|.+ +++-+.+--+..+ +++.+- -...++..+..
T Consensus 533 ---N------LlILYDAIgtlAdsvg~~Ln~~-----------~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~ 591 (885)
T KOG2023|consen 533 ---N------LLILYDAIGTLADSVGHALNKP-----------AYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIAS 591 (885)
T ss_pred ---c------eehHHHHHHHHHHHHHHhcCcH-----------HHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHH
Confidence 1 111222333 333333321 1111 1222221111122 334444 46678888888
Q ss_pred hhCccccccHHHHHHHH---Hc-------------cCChhh---HHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHh
Q 002789 722 TLGASVFPYLPKALEQL---LA-------------ESEPKE---MAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFN 782 (881)
Q Consensus 722 ~lg~~~~p~lp~~~~~l---l~-------------~~~~~~---~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~ 782 (881)
.+|..++||.++....- +. .++.++ +...|++++.++...|+.+.+++.+- .+. +
T Consensus 592 AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~s--nl~----~ 665 (885)
T KOG2023|consen 592 ALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQS--NLL----D 665 (885)
T ss_pred HHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhc--cHH----H
Confidence 99999999999865432 21 112233 34557999999999999988765431 122 3
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHH
Q 002789 783 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLL 843 (881)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~ 843 (881)
++-++.. + +-||+|++.|+|++++.+.|+.++ .|.+..++.-+.
T Consensus 666 lll~C~~--D---------~~peVRQS~FALLGDltk~c~~~v------~p~~~~fl~~lg 709 (885)
T KOG2023|consen 666 LLLQCLQ--D---------EVPEVRQSAFALLGDLTKACFEHV------IPNLADFLPILG 709 (885)
T ss_pred HHHHHhc--c---------CChHHHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHh
Confidence 3434431 1 579999999999999999998877 456666665444
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.20 E-value=2.3e-07 Score=105.11 Aligned_cols=679 Identities=15% Similarity=0.171 Sum_probs=331.3
Q ss_pred CChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 002789 50 CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLI 129 (881)
Q Consensus 50 ~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~ 129 (881)
+++-..||.|..=|-+-++++--.|..+.-..+-..++..+... +.-|.|-...+++-++.+--..+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-------------ngEVQnlAVKClg~lvsKvke~~ 82 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-------------NGEVQNLAVKCLGPLVSKVKEDQ 82 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-------------CcHHHHHHHHHHHHHHhhchHHH
Confidence 34578999999999999999877788776666666677776654 33466777788888887743335
Q ss_pred ChhhHHHHHHhhcCC-chhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc---
Q 002789 130 WSSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRS--- 205 (881)
Q Consensus 130 Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~--- 205 (881)
-.+..+.+...+-++ ....+.----|+...-++.-+. .. . -.+.++..+...+.++.+
T Consensus 83 le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~----~~----------~----la~tV~~~~t~~l~~~i~~qe 144 (1233)
T KOG1824|consen 83 LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS----SS----------F----LAATVCKRITPKLKQAISKQE 144 (1233)
T ss_pred HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc----cc----------c----cccHHHHHHHHHHHHHhhhcc
Confidence 555666665553222 2233322222222222332110 00 0 022333333333333211
Q ss_pred CCHHHHHHHHHHhcccccccccccc--cccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhhhh
Q 002789 206 SDFEVCTGVLDCMRRYISWIDINLI--ANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQIS 283 (881)
Q Consensus 206 ~~~~l~~~~L~~l~~~i~wi~~~~~--~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~l~ 283 (881)
....+..-+|+.+.-+++-.. ++. +...++..+...+. .+...+|..|+.|+..+...+-... -..+++.+
T Consensus 145 ~~sai~~e~lDil~d~lsr~g-~ll~~fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~l-y~~li~~L--- 217 (1233)
T KOG1824|consen 145 DVSAIKCEVLDILADVLSRFG-TLLPNFHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRDL-YVELIEHL--- 217 (1233)
T ss_pred cchhhHHHHHHHHHHHHHhhc-ccCcchHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHH---
Confidence 123355556666666654221 111 11223333333333 2467789999999999887642211 11233332
Q ss_pred hhccccCCCccHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhh---ccCCcchhhhHHHHHHH
Q 002789 284 RVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVM---QNCEVDTTFSIVQFLSG 360 (881)
Q Consensus 284 ~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~---~~~~~~v~~~~~~~~~~ 360 (881)
+..+.+.....-..-.-+++++++ .. . +..-..++..+.|++..+. +-.+++.++....-+-.
T Consensus 218 --l~~L~~~~q~~~~rt~Iq~l~~i~----r~-----a---g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 218 --LKGLSNRTQMSATRTYIQCLAAIC----RQ-----A---GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred --HhccCCCCchHHHHHHHHHHHHHH----HH-----h---cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 111111111111111222333322 11 0 0011124567788888887 33344455433333333
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHhhccCcccccccc-------cCCCCC-------hHHHHHHHHHHHHHHHHHH
Q 002789 361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLD-------VLDKIG-------IEEEDRMVEYRKDLLVLLR 426 (881)
Q Consensus 361 ~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~-------~~~~~~-------eed~~~f~~~R~~~~~~l~ 426 (881)
|.. +.| ....++.+.++..++.+..|+|.++.+.+ .+|++| +|||+.-+-.|+..+.++.
T Consensus 284 fl~---rcp---~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~ 357 (1233)
T KOG1824|consen 284 FLR---RCP---KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLE 357 (1233)
T ss_pred HHH---hCh---hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHH
Confidence 332 221 12347788899999999999888651110 000000 0123334456666666665
Q ss_pred HHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCC---CCCCh
Q 002789 427 SVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLP---CHSNR 503 (881)
Q Consensus 427 ~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~---~~~~p 503 (881)
.+..-.+ ++++.+++.+...+- ..+.++|=. + ....+...+..+.+-+.. ..+|-
T Consensus 358 a~IsSR~-E~L~~~~q~l~p~lI----~RfkEREEn----------V-------k~dvf~~yi~ll~qt~~~~~~~~d~d 415 (1233)
T KOG1824|consen 358 AVISSRL-EMLPDFYQTLGPALI----SRFKEREEN----------V-------KADVFHAYIALLKQTRPVIEVLADND 415 (1233)
T ss_pred HHHhccH-HHHHHHHHHhCHHHH----HHHHHHhhh----------H-------HHHHHHHHHHHHHcCCCCcccccCch
Confidence 5543332 233333332222221 122222211 1 122344444433321100 00111
Q ss_pred hHHHHHHHHHHHhH--HHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhh
Q 002789 504 LVALVYLETVTRYM--KFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTI 581 (881)
Q Consensus 504 ~v~~~~~~~igry~--~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l 581 (881)
+. +- |.-. .|+-. +-.+.+...+= +-+.+.+-+-+-.|...+..++...+..+.+|++.++..+...+
T Consensus 416 ~~-----e~-~g~~s~~~~L~--~~~~~iVkai~--~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l 485 (1233)
T KOG1824|consen 416 AM-----EQ-GGTPSDLSMLS--DQVPLIVKAIQ--KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSL 485 (1233)
T ss_pred hh-----hc-cCCccchHHHH--hhhHHHHHHHH--HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhc
Confidence 11 00 1000 01100 01112222211 11333332334446666777888888888888888888886666
Q ss_pred hcccccCcccccCCCccchhHHHHHHHHHhccCC-CCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHH
Q 002789 582 ARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED-VPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQ 660 (881)
Q Consensus 582 ~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~-~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~ 660 (881)
.... ..-..-+++++.+.++.. -+++....++..+.+|+....++-.-+ .-. .
T Consensus 486 ~DkS------------sss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyK-----------isa---E 539 (1233)
T KOG1824|consen 486 NDKS------------SSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYK-----------ISA---E 539 (1233)
T ss_pred CCcc------------chHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHh-----------hhH---H
Confidence 5431 112234455554443211 156677778888777776654332211 111 1
Q ss_pred HHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHc
Q 002789 661 IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLA 740 (881)
Q Consensus 661 ~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~ 740 (881)
.+.++..+.|...+...+. ..+..+-+.++....++-+..-..+.+||++...+....+..+|+.....+|..++.+++
T Consensus 540 AL~v~~~lvkvirpl~~~~-~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 540 ALLVCQQLVKVIRPLQPPS-SFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHHHHHHHhcccCCCc-cCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 2223333333333322111 011123344444455555555456678999999999999999998888899998888887
Q ss_pred cC--ChhhHHHHHHHHHHHH-HHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002789 741 ES--EPKEMAGFLVLLNQLI-CKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVI 817 (881)
Q Consensus 741 ~~--~~~~~~~~L~l~~~li-~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i 817 (881)
.. +..++..+=. ++.+. ....-+..+.+..++..+. +++.. .+.-+|..+..++..+
T Consensus 619 Rl~nEiTRl~AvkA-lt~Ia~S~l~i~l~~~l~~il~~l~----~flrK---------------~~r~lr~~~l~a~~~L 678 (1233)
T KOG1824|consen 619 RLGNEITRLTAVKA-LTLIAMSPLDIDLSPVLTEILPELA----SFLRK---------------NQRALRLATLTALDKL 678 (1233)
T ss_pred HHhchhHHHHHHHH-HHHHHhccceeehhhhHHHHHHHHH----HHHHH---------------HHHHHHHHHHHHHHHH
Confidence 65 3334332211 11111 1111122344444444333 44433 3456899999999999
Q ss_pred HhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHHHHHHHhhhhHH
Q 002789 818 ATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFSI 873 (881)
Q Consensus 818 ~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~~ 873 (881)
+++....+ .+..++.++.-+. .-...+|......++ .|+..+.-+++-
T Consensus 679 ~~~~~~~~-----~~~~~e~vL~el~-~Lisesdlhvt~~a~--~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 679 VKNYSDSI-----PAELLEAVLVELP-PLISESDLHVTQLAV--AFLTTLAIIQPS 726 (1233)
T ss_pred HHHHhccc-----cHHHHHHHHHHhh-hhhhHHHHHHHHHHH--HHHHHHHhcccH
Confidence 99873333 1213455555555 334457777777777 577777666543
No 22
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.94 E-value=3.8e-09 Score=87.89 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=61.6
Q ss_pred HHHHHHHHhcC-cchHHHHHHHhccC-ChhHHHHHHHHHHHHHHHhhcc--------CCCHHHHHHHHHHHHHHHH
Q 002789 26 AVNFCQQIKET-PSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYT--------SMSSEERNLIRESVFSMVC 91 (881)
Q Consensus 26 A~~~L~~~q~~-~~~w~~~~~lL~~~-~~~~vrffa~~~L~~~I~~~w~--------~l~~e~~~~lr~~ll~~l~ 91 (881)
|+++|++++++ |++|..+..++.+. .+..+|++|+.+|++.|+++|. .+|+++|..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 99999999999544 4699999999999999999999 9999999999999999875
No 23
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=98.90 E-value=6e-09 Score=111.35 Aligned_cols=128 Identities=16% Similarity=0.322 Sum_probs=107.3
Q ss_pred ccccHHHHHHHHHccCC-----hhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHH
Q 002789 727 VFPYLPKALEQLLAESE-----PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIR 801 (881)
Q Consensus 727 ~~p~lp~~~~~ll~~~~-----~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 801 (881)
...++|++++.++.+|. .++ +++|++++.+|.+.++.+.+.++.++..+++.|.+|+.++. .
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~-~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~---~--------- 131 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDARE-PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDF---E--------- 131 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS--HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTS---S---------
T ss_pred HHHHHHHHHHHHHHHHhcCCccccC-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh---h---------
Confidence 44788999999999883 456 99999999999999998889999999999999999999887 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHHHHHHHhhhhH
Q 002789 802 EVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFS 872 (881)
Q Consensus 802 ~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~ 872 (881)
++||+|.+||.|+.+++++|++.++.-+++ .+..+++++. ++..|++..++..|. ..+..++..++
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~--~f~~~idsi~-wg~kh~~~~I~~~~L--~~l~~ll~~~~ 197 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPE--QFKLVIDSIV-WGFKHTNREISETGL--NILLELLNNVS 197 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HH--HHHHHHHHHH-HHHTSSSHHHHHHHH--HHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHH--HHHHHHHHHH-HHhCCCcHHHHHHHH--HHHHHHHHHHH
Confidence 799999999999999999999988733322 5888999998 557799999999888 56666665554
No 24
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=0.00022 Score=79.15 Aligned_cols=178 Identities=19% Similarity=0.308 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhC
Q 002789 417 YRKDLLVLLRSVGRV-APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (881)
Q Consensus 417 ~R~~~~~~l~~i~~~-~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~ 495 (881)
.|....+..+.+.+. .+..+-.++-+.+..... ..||...+++.+++++++..+... ...++++++.+.+
T Consensus 232 Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~----~kWrtK~aslellg~m~~~ap~qL----s~~lp~iiP~lse- 302 (569)
T KOG1242|consen 232 VREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE----AKWRTKMASLELLGAMADCAPKQL----SLCLPDLIPVLSE- 302 (569)
T ss_pred hhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH----HhhhhHHHHHHHHHHHHHhchHHH----HHHHhHhhHHHHH-
Confidence 444444555555433 333333343444443333 379999999999999999888764 5678888887765
Q ss_pred CCCCCCChhHHHHHHHHHHHhHHHHhh---------------cCC-ChHHHHHHhh-------------------cccCC
Q 002789 496 KLPCHSNRLVALVYLETVTRYMKFIQE---------------HTQ-YIPVVLAAFL-------------------DERGI 540 (881)
Q Consensus 496 ~~~~~~~p~v~~~~~~~igry~~~l~~---------------~~~-~L~~vL~~~l-------------------~~~gl 540 (881)
..-+.||.|+.+..+++-+|.+.... +|. +.+..+..+. =.||+
T Consensus 303 -vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l 381 (569)
T KOG1242|consen 303 -VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGL 381 (569)
T ss_pred -HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHH
Confidence 55789999999999999999987654 444 3222221111 02678
Q ss_pred CCCCchhhhHHHHHHHHHHHHh--hhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCC
Q 002789 541 HHPNVHVSRRASYLFMRVVKLL--KAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED 615 (881)
Q Consensus 541 ~~~~~~v~~~A~~~f~~~~~~~--~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~ 615 (881)
++.+...++.++..+-+.|+.. +..+.||++.++..+...+... -++-+....-|+|.++...+
T Consensus 382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-----------~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-----------VPEVRAVAARALGALLERLG 447 (569)
T ss_pred hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-----------ChhHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999998 6778999999999998877643 25667778888888876543
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.39 E-value=0.011 Score=68.47 Aligned_cols=480 Identities=15% Similarity=0.134 Sum_probs=252.3
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChh
Q 002789 53 VQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSS 132 (881)
Q Consensus 53 ~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~ 132 (881)
..++--++-++...+.+-..-+|+ ....+-..++..+... ...||.|.+.+++.++...--.-+..
T Consensus 147 sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~-------------R~aVrKkai~~l~~la~~~~~~ly~~ 212 (1233)
T KOG1824|consen 147 SAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSP-------------RLAVRKKAITALGHLASSCNRDLYVE 212 (1233)
T ss_pred hhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccCh-------------HHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 345666666777776654444555 6666666666665533 67899999999999998764446777
Q ss_pred hHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHH
Q 002789 133 VFVDFLPQLNKGS--MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEV 210 (881)
Q Consensus 133 ~i~~l~~~~~~~~--~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l 210 (881)
.+++++.-+.++. .........|..++--.+.+.-. ...| -+|.+.+++..+ +..+.++
T Consensus 213 li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~----h~~~-----------ivp~v~~y~~~~----e~~dDEL 273 (1233)
T KOG1824|consen 213 LIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS----HLDK-----------IVPLVADYCNKI----EEDDDEL 273 (1233)
T ss_pred HHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc----ccch-----------hhHHHHHHhccc----ccCcHHH
Confidence 8888888776643 33445555566555433321100 0001 145555555433 2457789
Q ss_pred HHHHHHHhcccccccccccc-cccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhhhhhhcccc
Q 002789 211 CTGVLDCMRRYISWIDINLI-ANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLV 289 (881)
Q Consensus 211 ~~~~L~~l~~~i~wi~~~~~-~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~l~~i~~~~ 289 (881)
++.+|+++..|+..-+-+.. ..+++++++.+.+.. +|++- .+++.++.....+-..=.+--+.+
T Consensus 274 rE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisY---DPNy~------------yd~~eDed~~~~ed~eDde~~deY 338 (1233)
T KOG1824|consen 274 REYCLQALESFLRRCPKEILPHVPEIINLCLSYISY---DPNYN------------YDTEEDEDAMFLEDEEDDEQDDEY 338 (1233)
T ss_pred HHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhcc---CCCCC------------CCCccchhhhhhhccccchhcccc
Confidence 99999999999877654322 124566666666652 22110 001100000111100000000112
Q ss_pred CCCccHH--HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhcc
Q 002789 290 SEDGESE--LVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKS 367 (881)
Q Consensus 290 ~~~~d~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~ 367 (881)
.+|+|.. .+++-+|.+.++.....+... ...+.+-|.+..=+......|...+|. .|...++.
T Consensus 339 sDDeD~SWkVRRaAaKcl~a~IsSR~E~L~------------~~~q~l~p~lI~RfkEREEnVk~dvf~---~yi~ll~q 403 (1233)
T KOG1824|consen 339 SDDEDMSWKVRRAAAKCLEAVISSRLEMLP------------DFYQTLGPALISRFKEREENVKADVFH---AYIALLKQ 403 (1233)
T ss_pred ccccchhHHHHHHHHHHHHHHHhccHHHHH------------HHHHHhCHHHHHHHHHHhhhHHHHHHH---HHHHHHHc
Confidence 3444432 456667777666544433211 122334444444444333444433333 34444443
Q ss_pred CCCCcH------------------HHHHHHHHHHHHHHHhhccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 002789 368 LSPLKE------------------EQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVG 429 (881)
Q Consensus 368 ~~~l~~------------------~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~ 429 (881)
.+++.+ ......+.++..+-++|+ ++.. . .|...-.+|..+.
T Consensus 404 t~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr--~ks~-----------------k-t~~~cf~lL~eli 463 (1233)
T KOG1824|consen 404 TRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR--EKSV-----------------K-TRQGCFLLLTELI 463 (1233)
T ss_pred CCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh--hccc-----------------c-chhhHHHHHHHHH
Confidence 221110 112334445555555554 1110 0 2223334555555
Q ss_pred hcChhhHHHHHHHH---HHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHH
Q 002789 430 RVAPEVTQVFIRNS---LANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVA 506 (881)
Q Consensus 430 ~~~~~~~l~~i~~~---l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~ 506 (881)
...|....+++-.. +...+...+..+--.+++-.|+..+++..-++.. ..+++.+...+.-+ + +++-+.|.
T Consensus 464 ~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~f----hp~~~~Ls~~v~~a-V-~d~fyKis 537 (1233)
T KOG1824|consen 464 NVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVF----HPHLSALSPPVVAA-V-GDPFYKIS 537 (1233)
T ss_pred HhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhc----ccchhhhhhHHHHH-h-cCchHhhh
Confidence 56665544444333 3333433344455567887777777766544432 34444444433321 2 56777787
Q ss_pred HHHHHHHHHhHHHHhh-cC-------CChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhh
Q 002789 507 LVYLETVTRYMKFIQE-HT-------QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQ 578 (881)
Q Consensus 507 ~~~~~~igry~~~l~~-~~-------~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~ 578 (881)
.-.+-+.++|.+++.. +| .+..++....+....-.+...+||.||..+.-.+.-..+..+..+++..+..+-
T Consensus 538 aEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~ 617 (1233)
T KOG1824|consen 538 AEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILL 617 (1233)
T ss_pred HHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 7777789999999875 22 456666444432222455677899999999999888888777766666666665
Q ss_pred hhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHH
Q 002789 579 DTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQV 636 (881)
Q Consensus 579 ~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l 636 (881)
+-+.+. -.++.-+-|+..+..+ +..- .....+..+++-+.+-+
T Consensus 618 eRl~nE-------------iTRl~AvkAlt~Ia~S-~l~i-~l~~~l~~il~~l~~fl 660 (1233)
T KOG1824|consen 618 ERLGNE-------------ITRLTAVKALTLIAMS-PLDI-DLSPVLTEILPELASFL 660 (1233)
T ss_pred HHHhch-------------hHHHHHHHHHHHHHhc-ccee-ehhhhHHHHHHHHHHHH
Confidence 444422 2566677777666544 2222 22334444444444433
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.22 E-value=0.008 Score=70.40 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHHhc-CcchHHHHHHHhcc---CChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 002789 18 IDSMLKSQAVNFCQQIKE-TPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~~---~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~ 93 (881)
.|...|+-+.-++..+.. .|+...++..-+.+ ++++.+|-.|+.++-+.. +++-...+-..+...+...
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~~~ 126 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLSDP 126 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhcCC
Confidence 688999999999999887 66656666665553 456899999999998753 4555566666666655432
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChh-hHHHHHHhhcCC-chhHHHHHHHHHHH
Q 002789 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSS-VFVDFLPQLNKG-SMVIDMFCRVLNSL 158 (881)
Q Consensus 94 ~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~-~i~~l~~~~~~~-~~~~~~~L~iL~~l 158 (881)
.++||+|.+.++..+++. +|+.-+. +++.+.+++... +.....++.++..+
T Consensus 127 -------------~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 127 -------------SPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -------------SHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 569999999999999987 6776555 688888887543 34455566666655
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0015 Score=78.94 Aligned_cols=182 Identities=14% Similarity=0.132 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHhhccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCC
Q 002789 375 QRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADR 454 (881)
Q Consensus 375 ~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~ 454 (881)
..|++.+|++.+++ .+|+|+-. .+..|..+=..+..=....+-.+..+++++.+.+..+.
T Consensus 992 l~p~l~kLIPrLyR-Y~yDP~~~-------------------Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 992 LEPYLKKLIPRLYR-YQYDPDKK-------------------VQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSK 1051 (1702)
T ss_pred hhhHHHHhhHHHhh-hccCCcHH-------------------HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccch
Confidence 36888888888764 56655421 33444444444433223444566666777777766678
Q ss_pred ChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHH---HHHHHHHHhHHHHh--hc----CC
Q 002789 455 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVAL---VYLETVTRYMKFIQ--EH----TQ 525 (881)
Q Consensus 455 ~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~---~~~~~igry~~~l~--~~----~~ 525 (881)
.|+.+||+-.++.-+-.+=+.++ ..+.++++-..++. ..++=+..||- -+...++..+--.. .| .+
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~---~~e~lpelw~~~fR--vmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQ---VKEKLPELWEAAFR--VMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 89999998666655555544444 35666776666654 33444555542 22233333322111 12 36
Q ss_pred ChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhh
Q 002789 526 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA 582 (881)
Q Consensus 526 ~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~ 582 (881)
.+..+|+.+++..+| +..+.||..+..++.+++|..++.+.||++.++-.+-+.+.
T Consensus 1127 ~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 788889988885555 77889999999999999999999999999999888766554
No 28
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.77 E-value=0.016 Score=63.21 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=99.4
Q ss_pred HHHHHHHHH-HHHHhhccCcccccccccCCCCChH------HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhh
Q 002789 376 RLHAGQILE-VILTQIRYDPMYRNNLDVLDKIGIE------EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAV 448 (881)
Q Consensus 376 ~~~l~~Ll~-~l~~km~~p~~~~~~~~~~~~~~ee------d~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l 448 (881)
++++.+++. +++..|.+-+++++.| +|+-.| |-.++..-|+...++++.++.-.++.+.+.+...+++.+
T Consensus 182 ~~~L~~Iie~VI~Pnl~~~e~D~Elf---EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l 258 (370)
T PF08506_consen 182 KPHLQQIIEKVIFPNLCLREEDEELF---EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLL 258 (370)
T ss_dssp HHHHHHHHHHTHHHHHS--HHHHHHH---HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccCCCHHHHHHH---ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 567888887 6678898855543211 111110 001455677888999999998888888888888888777
Q ss_pred cc---cCCCChhhHHHHHHHHHHhhhcCcchh-h--h-----ccchHHHH-HHHHHHhCCCCCCCChhHHHHHHHHHHHh
Q 002789 449 TF---SADRNVEEVEAALTLLYALGESMSEEA-M--R-----TGAGHLSE-LVPMLLQTKLPCHSNRLVALVYLETVTRY 516 (881)
Q Consensus 449 ~~---~~~~~w~~~EaaL~~l~~i~e~~~~~~-~--~-----~~~~~l~~-ll~~l~~~~~~~~~~p~v~~~~~~~igry 516 (881)
++ .+..+|+..++|++++.+++....... + . +-.+++.+ +++-|. + ....||.++..++..+..|
T Consensus 259 ~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~--~~~~~piLka~aik~~~~F 335 (370)
T PF08506_consen 259 QQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-P--DVNSHPILKADAIKFLYTF 335 (370)
T ss_dssp HHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHH
T ss_pred HHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-c--cCCCCcchHHHHHHHHHHH
Confidence 63 245789999999999999887442211 0 0 01233332 223333 1 2357898888777666655
Q ss_pred HHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHH
Q 002789 517 MKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLF 555 (881)
Q Consensus 517 ~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f 555 (881)
..-+. ++.+..+++.++ +.+.+++.-|..=|++++
T Consensus 336 r~~l~--~~~l~~~~~~l~--~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 336 RNQLP--KEQLLQIFPLLV--NHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp GGGS---HHHHHHHHHHHH--HHTTSS-HHHHHHHHHHH
T ss_pred HhhCC--HHHHHHHHHHHH--HHhCCCCcchhhhhhhhC
Confidence 54432 345666666665 457777777887777653
No 29
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.12 Score=56.98 Aligned_cols=282 Identities=12% Similarity=0.143 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHH----HHhHHHHhhcCCChH----H
Q 002789 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETV----TRYMKFIQEHTQYIP----V 529 (881)
Q Consensus 458 ~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~i----gry~~~l~~~~~~L~----~ 529 (881)
..+.+-.+++++++.+..... +..+++.+++..+. --.+||.+...+.|.. ..+++-..+.+.++. .
T Consensus 424 vk~ttAwc~g~iad~va~~i~--p~~Hl~~~vsa~li---Gl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a 498 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMIIS--PCGHLVLEVSASLI---GLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA 498 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcC--ccccccHHHHHHHh---hhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH
Confidence 345455668888876654321 45677777776653 2357777754444444 444444434455544 4
Q ss_pred HHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch----hhHHHHHHHhhhhhhcccccCcccccCCCccchhHH--
Q 002789 530 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV----PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHI-- 603 (881)
Q Consensus 530 vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~----p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l-- 603 (881)
++..++.......+....|..+..++-.+..-|...+. .+.+-++.++..+++...+ .+..+++..+
T Consensus 499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q-------~l~~eD~~~~~e 571 (858)
T COG5215 499 ILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQ-------ILATEDQLLVEE 571 (858)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhHHHHHHHH
Confidence 45555532222233445778888888888888876554 4566666666666554321 1123333333
Q ss_pred -----HHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHH-HHHhhcccCCCCC
Q 002789 604 -----FEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMA-INALSKGFNERLV 677 (881)
Q Consensus 604 -----~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~l~k~f~~~~~ 677 (881)
..-+..+|...+.+ ....-+++|.-+++.+++. +. .. ....+-..|.+ ..+++++|..+.
T Consensus 572 lqSN~~~vl~aiir~~~~~---ie~v~D~lm~Lf~r~les~-~~---t~------~~~dV~~aIsal~~sl~e~Fe~y~- 637 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRD---IEDVEDQLMELFIRILEST-KP---TT------AFGDVYTAISALSTSLEERFEQYA- 637 (858)
T ss_pred HHHHHHHHHHHHHHhcCCC---cccHHHHHHHHHHHHHhcc-CC---ch------hhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333444443211 1233445666666655543 10 00 01113333333 356778886553
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCCh----hhH-HHHHH
Q 002789 678 TSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP----KEM-AGFLV 752 (881)
Q Consensus 678 ~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~----~~~-~~~L~ 752 (881)
....+.+.+.+. ..+..+...+--++.++..++|.++.+|-..++..+.+.... +++ +.+|+
T Consensus 638 -----------~~fiPyl~~aln--~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLS 704 (858)
T COG5215 638 -----------SKFIPYLTRALN--CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILS 704 (858)
T ss_pred -----------hhhhHHHHHHhc--chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHH
Confidence 223344444442 234567777888999999999999999999888888765532 333 78899
Q ss_pred HHHHHHHHhhcchHHHhhhhHHHHHHH
Q 002789 753 LLNQLICKFNTLVHDILDEVFPAIAGR 779 (881)
Q Consensus 753 l~~~li~~~~~~~~~~l~~ll~~l~~~ 779 (881)
..+.+....|.++.++++.++. ++++
T Consensus 705 vFgDIAlaiga~F~~YL~~im~-L~qq 730 (858)
T COG5215 705 VFGDIALAIGANFESYLDMIMM-LFQQ 730 (858)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH-HHHH
Confidence 9999999999999999998765 4433
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.24 Score=54.72 Aligned_cols=326 Identities=17% Similarity=0.246 Sum_probs=178.4
Q ss_pred HHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhc-CCChHHHHHHhhccc
Q 002789 460 EAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLAAFLDER 538 (881)
Q Consensus 460 EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~-~~~L~~vL~~~l~~~ 538 (881)
..+|..+.+++=+...+. ..++..++.-++. ..++++-.||+-.|+.+-..++-.+.. ..|.+.+...+. +
T Consensus 61 kGgLiGlAA~~iaLg~~~----~~Y~~~iv~Pv~~--cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~--k 132 (675)
T KOG0212|consen 61 KGGLIGLAAVAIALGIKD----AGYLEKIVPPVLN--CFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLC--K 132 (675)
T ss_pred cchHHHHHHHHHHhcccc----HHHHHHhhHHHHH--hccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHH--H
Confidence 378888877776666554 2366666555543 246666777766666554444444332 233333322221 2
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHhhhcch-h-hHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCC
Q 002789 539 GIHHPNVHVSRRASYLFMRVVKLLKAKLV-P-FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDV 616 (881)
Q Consensus 539 gl~~~~~~v~~~A~~~f~~~~~~~~~~l~-p-~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~ 616 (881)
-..++...|+.. +.++-|+.++.--.=. . .++.++.-+..-+... .+..+..+.+=+.++-+.
T Consensus 133 lsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~-----------n~~tR~flv~Wl~~Lds~--- 197 (675)
T KOG0212|consen 133 LSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVI-----------NPMTRQFLVSWLYVLDSV--- 197 (675)
T ss_pred HhcCCccccccH-HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcC-----------CchHHHHHHHHHHHHhcC---
Confidence 245666667664 5788888877542221 2 3677777776655543 477888899888776655
Q ss_pred CccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH--HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHH
Q 002789 617 PPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN--IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDV 694 (881)
Q Consensus 617 ~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~ 694 (881)
|.-+-..|+..+++-+++-+.... ++++.+.+ +... +..+. +. |.+ -=+.++.++
T Consensus 198 P~~~m~~yl~~~ldGLf~~LsD~s---------~eVr~~~~t~l~~f---L~eI~----s~--P~s-----~d~~~~i~v 254 (675)
T KOG0212|consen 198 PDLEMISYLPSLLDGLFNMLSDSS---------DEVRTLTDTLLSEF---LAEIR----SS--PSS-----MDYDDMINV 254 (675)
T ss_pred CcHHHHhcchHHHHHHHHHhcCCc---------HHHHHHHHHHHHHH---HHHHh----cC--ccc-----cCcccchhh
Confidence 555677888888888777653321 12222222 2222 22221 11 000 012344444
Q ss_pred HHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCC-h-----hhHHHHHH-HHHHHH-HHhhcchH
Q 002789 695 LLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE-P-----KEMAGFLV-LLNQLI-CKFNTLVH 766 (881)
Q Consensus 695 ~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~-~-----~~~~~~L~-l~~~li-~~~~~~~~ 766 (881)
+...+. ...+.++......+...+...|.+++||++.++..++.-.. + ++..-.++ .+..++ .+.+...
T Consensus 255 lv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~- 331 (675)
T KOG0212|consen 255 LVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE- 331 (675)
T ss_pred cccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-
Confidence 443332 34466777778888888999999999999999999887542 2 22222222 222222 2222211
Q ss_pred HHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhh
Q 002789 767 DILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTS 846 (881)
Q Consensus 767 ~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~ 846 (881)
++ ++++++-....+.. +.-|.|-+.++-+..+..+.+..++... +.+..+++..-
T Consensus 332 --id--~~~ii~vl~~~l~~---------------~~~~tri~~L~Wi~~l~~~~p~ql~~h~------~~if~tLL~tL 386 (675)
T KOG0212|consen 332 --ID--YGSIIEVLTKYLSD---------------DREETRIAVLNWIILLYHKAPGQLLVHN------DSIFLTLLKTL 386 (675)
T ss_pred --cc--hHHHHHHHHHHhhc---------------chHHHHHHHHHHHHHHHhhCcchhhhhc------cHHHHHHHHhh
Confidence 22 23333222222222 4557899999999998888888887432 23444444333
Q ss_pred cCCCCccchhHhh
Q 002789 847 CNHKDYLVRKVCY 859 (881)
Q Consensus 847 ~~~~d~~~~k~~~ 859 (881)
.+.+|..+.++-+
T Consensus 387 sd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 387 SDRSDEVVLLALS 399 (675)
T ss_pred cCchhHHHHHHHH
Confidence 4444444444433
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=96.86 E-value=1.7 Score=52.00 Aligned_cols=199 Identities=12% Similarity=0.047 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHHHHHhc-CcchHHHHHHHhcc---CChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 002789 18 IDSMLKSQAVNFCQQIKE-TPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~~---~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~ 93 (881)
.|.+.|+-..-+|..+-+ .|+---++..-|.+ ++++.+|-.|+.+|-..- .++ +-+.++..+.+.
T Consensus 80 ~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir-------~~~----i~e~l~~~lkk~ 148 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-------VSS----VLEYTLEPLRRA 148 (746)
T ss_pred CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------cHH----HHHHHHHHHHHH
Confidence 588899999999988776 77744444443432 356899999999887531 122 333444444443
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCCh--hhHHHHHHhhcC-CchhHHHHHHHHHHHHHHhhhcCCCCC
Q 002789 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWS--SVFVDFLPQLNK-GSMVIDMFCRVLNSLDDELISLDYPRT 170 (881)
Q Consensus 94 ~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp--~~i~~l~~~~~~-~~~~~~~~L~iL~~l~eEv~~~~~~~~ 170 (881)
.. .. .++||++.+.++..++.. .|+.-+ ++++.+..++.. ++...-+.+..|..+.++-.+
T Consensus 149 L~-------D~--~pYVRKtAalai~Kly~~-~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~------ 212 (746)
T PTZ00429 149 VA-------DP--DPYVRKTAAMGLGKLFHD-DMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE------ 212 (746)
T ss_pred hc-------CC--CHHHHHHHHHHHHHHHhh-CcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch------
Confidence 21 11 789999999999999765 454322 345566666554 445566777777777553211
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCCh
Q 002789 171 ADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPE 250 (881)
Q Consensus 171 ~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~ 250 (881)
... .. .+.+.. +...|.+ .++=....+|+++..|.. -+.-....++..+...|+ +.++
T Consensus 213 ~l~---------l~----~~~~~~-Ll~~L~e---~~EW~Qi~IL~lL~~y~P---~~~~e~~~il~~l~~~Lq--~~N~ 270 (746)
T PTZ00429 213 KIE---------SS----NEWVNR-LVYHLPE---CNEWGQLYILELLAAQRP---SDKESAETLLTRVLPRMS--HQNP 270 (746)
T ss_pred hhH---------HH----HHHHHH-HHHHhhc---CChHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHhc--CCCH
Confidence 000 00 111111 1122221 123233356666655432 111111245666666666 4578
Q ss_pred hHHHHHHHHHHHHHh
Q 002789 251 QFRGAAVGCVLAVVS 265 (881)
Q Consensus 251 ~~~~~a~~~l~~ii~ 265 (881)
.+.-+|+.++..+..
T Consensus 271 AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 271 AVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888877654
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.75 E-value=1.2 Score=52.13 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhC
Q 002789 416 EYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (881)
Q Consensus 416 ~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~ 495 (881)
..|+...-++..++..+|+.+-..+.+.+.+.+.. .++..+-+|+.++..+ ...+.. ....++.++..|..
T Consensus 129 ~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d---~~~~V~~~a~~~l~~i--~~~~~~---~~~~~~~~~~~L~~- 199 (526)
T PF01602_consen 129 YVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSD---KDPSVVSAALSLLSEI--KCNDDS---YKSLIPKLIRILCQ- 199 (526)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTH---SSHHHHHHHHHHHHHH--HCTHHH---HTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccC---CcchhHHHHHHHHHHH--ccCcch---hhhhHHHHHHHhhh-
Confidence 37888888889999889987644356667777643 5677888888877777 122221 11455555555543
Q ss_pred CCCCCCChhHHHHHHHHHHHhHHHHhhcC---CChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHH
Q 002789 496 KLPCHSNRLVALVYLETVTRYMKFIQEHT---QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVV 559 (881)
Q Consensus 496 ~~~~~~~p~v~~~~~~~igry~~~l~~~~---~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~ 559 (881)
+...++|-++...+.++++|.+.-...+ ..++.++..+ .+.++.|.-.|+.++..+.
T Consensus 200 -~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l------~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 200 -LLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLL------QSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp -HHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHS
T ss_pred -cccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHh------hccccHHHHHHHHHHHHhh
Confidence 2256778888888888888876544433 2333333322 2345566666666666433
No 33
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.22 Score=61.29 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHH
Q 002789 432 APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLE 511 (881)
Q Consensus 432 ~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~ 511 (881)
.|+.+.+++. +.+ .+..|+..--|-|.++++++...+.. .++++++++.|.. ..-+|++.|+.+.-.
T Consensus 954 qPdLVYKFM~-LAn------h~A~wnSk~GaAfGf~~i~~~a~~kl----~p~l~kLIPrLyR--Y~yDP~~~Vq~aM~s 1020 (1702)
T KOG0915|consen 954 QPDLVYKFMQ-LAN------HNATWNSKKGAAFGFGAIAKQAGEKL----EPYLKKLIPRLYR--YQYDPDKKVQDAMTS 1020 (1702)
T ss_pred ChHHHHHHHH-Hhh------hhchhhcccchhhchHHHHHHHHHhh----hhHHHHhhHHHhh--hccCCcHHHHHHHHH
Confidence 4666655533 222 13669988888899999988665554 6889999999986 556888999633321
Q ss_pred H---HHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHH
Q 002789 512 T---VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (881)
Q Consensus 512 ~---igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~ 561 (881)
+ +..=++-. -.+|+..++..++ .++.+..=+||.++|.|+..+.+.
T Consensus 1021 IW~~Li~D~k~~--vd~y~neIl~eLL--~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1021 IWNALITDSKKV--VDEYLNEILDELL--VNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHhccChHHH--HHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHHcC
Confidence 1 11111000 1246777788877 557766669999999999988766
No 34
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=1.7 Score=49.73 Aligned_cols=240 Identities=15% Similarity=0.262 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCch-hHHHHH
Q 002789 74 MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSM-VIDMFC 152 (881)
Q Consensus 74 l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~-~~~~~L 152 (881)
.+++-..-|-+-++.++... .+|+|.|...++-.++.+ ||+.-...|+-+.+-+..... ....+.
T Consensus 137 vTpdLARDLa~Dv~tLL~ss-------------kpYvRKkAIl~lykvFLk-YPeAlr~~FprL~EkLeDpDp~V~SAAV 202 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSS-------------KPYVRKKAILLLYKVFLK-YPEALRPCFPRLVEKLEDPDPSVVSAAV 202 (877)
T ss_pred cCchhhHHHHHHHHHHHhcC-------------chHHHHHHHHHHHHHHHh-hhHhHhhhHHHHHHhccCCCchHHHHHH
Confidence 34455555667777776532 789999999999999988 888777778888887766433 333444
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccc
Q 002789 153 RVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN 232 (881)
Q Consensus 153 ~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~ 232 (881)
.+...|+ . ..++ . .-.+...++.+|.. +.+.=+....++.++.... +.--.-
T Consensus 203 ~VICELA----r-KnPk------------n------yL~LAP~ffklltt--SsNNWmLIKiiKLF~aLtp---lEPRLg 254 (877)
T KOG1059|consen 203 SVICELA----R-KNPQ------------N------YLQLAPLFYKLLVT--SSNNWVLIKLLKLFAALTP---LEPRLG 254 (877)
T ss_pred HHHHHHH----h-hCCc------------c------cccccHHHHHHHhc--cCCCeehHHHHHHHhhccc---cCchhh
Confidence 4433321 1 1111 1 22334445556654 3343355556666655433 221122
Q ss_pred cccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChh--hhHHHHHH-h-hhhhhccccCCCccHHHHHHHHHHHHHH
Q 002789 233 DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQ--SKLNLLQT-L-QISRVFGLVSEDGESELVSKVAALLTGY 308 (881)
Q Consensus 233 ~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~--~k~~ll~~-l-~l~~i~~~~~~~~d~~~~~~l~~l~~~~ 308 (881)
..+++-+.++++ +..-..--.+|++.++.-.|... +....++. . .+..++. .+|.+..|. +-+ ++
T Consensus 255 KKLieplt~li~----sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fie--dsDqNLKYl---gLl--am 323 (877)
T KOG1059|consen 255 KKLIEPITELME----STVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIE--DSDQNLKYL---GLL--AM 323 (877)
T ss_pred hhhhhHHHHHHH----hhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhh--cCCccHHHH---HHH--HH
Confidence 457788888887 44444455677777776644211 22222221 1 1333333 222332222 211 11
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Q 002789 309 AMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILT 388 (881)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~ 388 (881)
+ -+.. ++. ..++.-.+++++|+...+..+.......+....+ +.-+..++..++.
T Consensus 324 ~-KI~k------tHp------~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs------------kkNl~eIVk~LM~ 378 (877)
T KOG1059|consen 324 S-KILK------THP------KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS------------KKNLMEIVKTLMK 378 (877)
T ss_pred H-HHhh------hCH------HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh------------hhhHHHHHHHHHH
Confidence 1 1111 111 1234556788999998888887666655543321 1335555566655
Q ss_pred hhc
Q 002789 389 QIR 391 (881)
Q Consensus 389 km~ 391 (881)
++.
T Consensus 379 ~~~ 381 (877)
T KOG1059|consen 379 HVE 381 (877)
T ss_pred HHH
Confidence 553
No 35
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.68 E-value=0.087 Score=58.91 Aligned_cols=269 Identities=16% Similarity=0.227 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccc-cCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHh
Q 002789 550 RASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTS-MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSL 628 (881)
Q Consensus 550 ~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~-p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~l 628 (881)
....++.|++.-+++.+.|+...+++++-.++....+ |. .+.=-.|+||++|.+|.... +...+.+..+
T Consensus 45 ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPs-------nP~FnHylFEsi~~lir~~~---~~~~~~v~~~ 114 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPS-------NPRFNHYLFESIGALIRFVC---EADPEAVSQF 114 (435)
T ss_dssp HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS----------HHHHHHHHHHHHHHHHHS----GGGHH---HH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CcchhhhHHHHHHHHHHhcc---CCChhHHHHH
Confidence 4456788888889999999999999998877654332 32 24456789999999998643 2223322222
Q ss_pred hHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhH
Q 002789 629 LTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPL 708 (881)
Q Consensus 629 l~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~i 708 (881)
-+.++.-++.++++.. .|-..-..+ ++..+-.... .+. +.+.|.++++.++. -.-|.....+
T Consensus 115 E~~L~P~f~~ILq~dV----~EF~PYvfQ---Ila~Lle~~~--~~~--------~p~~y~~L~~~Ll~-p~lWe~~gni 176 (435)
T PF03378_consen 115 EEALFPPFQEILQQDV----QEFIPYVFQ---ILAQLLELRP--SSP--------LPDAYKQLFPPLLS-PALWERRGNI 176 (435)
T ss_dssp HHHHHHHHHHHHHTT-----TTTHHHHHH---HHHHHHHHSS----S----------TTTGGGHHHHTS-GGGGGSTTTH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHcCC--CCC--------CcHHHHHHHHHHcC-cchhccCCCc
Confidence 2233333334454321 122222222 2222222211 011 12334444444332 1233333333
Q ss_pred hhHHHHHHHHHHHhhCcccc--ccHHHHHH---HHHccCChhhHHHHHHHHHHHHHHhhcc-hHHHhhhhHHHHHHHHHh
Q 002789 709 RCKVTSFIHRMVDTLGASVF--PYLPKALE---QLLAESEPKEMAGFLVLLNQLICKFNTL-VHDILDEVFPAIAGRIFN 782 (881)
Q Consensus 709 r~~~~~~~~~~v~~lg~~~~--p~lp~~~~---~ll~~~~~~~~~~~L~l~~~li~~~~~~-~~~~l~~ll~~l~~~~~~ 782 (881)
- ++-++++..+..-+..+. +.+.+++. .++.+ ...| ..-..++..++..+..+ +.+++.+++.-++.+
T Consensus 177 P-alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s-k~~D-~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~R--- 250 (435)
T PF03378_consen 177 P-ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS-KAND-HYGFDLLESIVENLPPEALEPYLKQIFTLLLTR--- 250 (435)
T ss_dssp H-HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT--TTCH-HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHH---
T ss_pred C-cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC-CCcc-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---
Confidence 3 222233332222222222 45555444 44443 2345 34457999999999875 467888888887766
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-cCCcccc-ccCCCcC-ChHHHHHHHH-HhhcCCCCccchhHh
Q 002789 783 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIAT-HDLSSVF-LSPKSRG-YLDPIMQLLL-YTSCNHKDYLVRKVC 858 (881)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~-~~~~~~l-~s~~~~~-~l~~~l~~~~-~~~~~~~d~~~~k~~ 858 (881)
++... .+..++.|..|+.-++. ++...++ .-++-++ .+..++..+. ......+.+.-+|+|
T Consensus 251 -Lq~sk--------------T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~ 315 (435)
T PF03378_consen 251 -LQSSK--------------TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKIC 315 (435)
T ss_dssp -HHHC----------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHH
T ss_pred -HhhCC--------------cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHH
Confidence 33222 24688888888776644 4433333 1122333 4555666654 444566777889999
Q ss_pred hHHHHHHHHhh
Q 002789 859 YFLGFFSTLHL 869 (881)
Q Consensus 859 ~~~~~~~~~~~ 869 (881)
. .-.+++++
T Consensus 316 ~--vGltkLL~ 324 (435)
T PF03378_consen 316 A--VGLTKLLC 324 (435)
T ss_dssp H--HHHHHHHH
T ss_pred H--HHHHHHHh
Confidence 8 46666665
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.23 E-value=0.019 Score=49.41 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhc-CCChHHHHHHhhc
Q 002789 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLAAFLD 536 (881)
Q Consensus 458 ~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~-~~~L~~vL~~~l~ 536 (881)
.+-++|.++.+++.+++... ..++..+++.++. ...+++++||...++.+...++..+.. -.++..+...+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~----~~~l~~Il~pVL~--~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~- 74 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI----SKYLDEILPPVLK--CFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALC- 74 (97)
T ss_pred chhHHHHHHHHHHHHchHhH----HHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45678889999999888774 6788888888875 458899999999999999998887642 224555555544
Q ss_pred ccCCCCCCchhhhHHHHHHHHHH
Q 002789 537 ERGIHHPNVHVSRRASYLFMRVV 559 (881)
Q Consensus 537 ~~gl~~~~~~v~~~A~~~f~~~~ 559 (881)
+.+.+++++||..|+ .+-|+.
T Consensus 75 -kl~~D~d~~Vr~~a~-~Ld~ll 95 (97)
T PF12755_consen 75 -KLSADPDENVRSAAE-LLDRLL 95 (97)
T ss_pred -HHHcCCchhHHHHHH-HHHHHh
Confidence 457888999988774 454443
No 37
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.12 E-value=0.53 Score=52.79 Aligned_cols=230 Identities=18% Similarity=0.227 Sum_probs=124.8
Q ss_pred hhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHh
Q 002789 563 KAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLD 642 (881)
Q Consensus 563 ~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~ 642 (881)
+..+.|+++++++.+-.++... +..+..+++.++-.++.... +.-..+...+++-+...++...+.
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~-----------~s~ENeylMk~iMRvl~~~~---e~~~p~~~~il~~L~~il~~v~kN 82 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKP-----------GSAENEYLMKCIMRVLSVLQ---EDILPIAVEILQHLTAILKEVSKN 82 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------------STC-HHHHHHHHHHHHHST---TTTGGGHHHHHHHHHHHHHHHHTS
T ss_pred HHHhhhhHHHHHHHHHHHHhcC-----------CCccchHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567899999999998888754 23567889999988887643 334455666666666666555442
Q ss_pred hhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHh
Q 002789 643 AKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 722 (881)
Q Consensus 643 ~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~ 722 (881)
+.+... -|.+...++.+-+...... ...+...-..+++.+..++++ +..+.--++.+.++.++..
T Consensus 83 ------PsnP~F---nHylFEsi~~lir~~~~~~----~~~v~~~E~~L~P~f~~ILq~--dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 83 ------PSNPRF---NHYLFESIGALIRFVCEAD----PEAVSQFEEALFPPFQEILQQ--DVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp ---------HHH---HHHHHHHHHHHHHHS-GGG----HH---HHHHHHHHHHHHHHHT--T-TTTHHHHHHHHHHHHHH
T ss_pred ------CCCcch---hhhHHHHHHHHHHhccCCC----hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHc
Confidence 222222 2233334444444322211 001123334455666666653 2223344777888888765
Q ss_pred hC-ccccccHHHHHHHHHccC---ChhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCH
Q 002789 723 LG-ASVFPYLPKALEQLLAES---EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTE 798 (881)
Q Consensus 723 lg-~~~~p~lp~~~~~ll~~~---~~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~ 798 (881)
-. ..+-+..-.+++.++... ....++....++..++.+-...+. -.+-+.++++..-.++.... .
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~--~~~~l~~iLgvFQkLi~sk~---~------ 216 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIV--ANNQLEPILGVFQKLIASKA---N------ 216 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHHHHHHT-TT---C------
T ss_pred CCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhc--chhhHHHHHHHHHHHHCCCC---c------
Confidence 43 222223333444444321 223568888899999999877653 12223344433333444332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHh
Q 002789 799 EIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYT 845 (881)
Q Consensus 799 ~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~ 845 (881)
| ..-|.++.+++.+.+...+ .+++.+++..++.-
T Consensus 217 ---D-----~~gF~LL~~iv~~~p~~~l-----~~yl~~I~~lll~R 250 (435)
T PF03378_consen 217 ---D-----HYGFDLLESIVENLPPEAL-----EPYLKQIFTLLLTR 250 (435)
T ss_dssp ---H-----HHHHHHHHHHHHHS-HHHH-----GGGHHHHHHHHHHH
T ss_pred ---c-----hHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHHHH
Confidence 2 2367899999999977665 44788888877743
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.05 E-value=0.017 Score=49.65 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=44.6
Q ss_pred CChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhc
Q 002789 525 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIAR 583 (881)
Q Consensus 525 ~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~ 583 (881)
+.+++||.. +.+++.+||..||.++..+++.++..+.||+++|+..+..++..
T Consensus 27 ~Il~pVL~~------~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 27 EILPPVLKC------FDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred HHHHHHHHH------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346666643 57889999999999999999999999999999999998776653
No 39
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=6.9 Score=47.27 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhc-----ccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCC--ChhH-HHH
Q 002789 437 QVFIRNSLANAVT-----FSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHS--NRLV-ALV 508 (881)
Q Consensus 437 l~~i~~~l~~~l~-----~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~--~p~v-~~~ 508 (881)
++.+.+.+...+. +.-...=+.++||.|.||+++.+-...+. .+++..+...|+....++.+ .++- ..+
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l---~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL---KPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh---hHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 3445555555553 11123446789999999999998876652 45666677777653222111 1111 245
Q ss_pred HHHHHHHhHHH----------------------------HhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHH
Q 002789 509 YLETVTRYMKF----------------------------IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 560 (881)
Q Consensus 509 ~~~~igry~~~----------------------------l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~ 560 (881)
+.|.+||...+ +...+.|..++++-++. ..+.|=.+.+|..|++++.++..
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t-~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLT-KKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHh-cccccccHHHHHHHHHHHHHHHH
Confidence 56777774433 33357788888877765 23666678899999999999999
Q ss_pred Hhhhcch-hhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhcc
Q 002789 561 LLKAKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 613 (881)
Q Consensus 561 ~~~~~l~-p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~ 613 (881)
.-.+.+. -++++++... +.. +.+.+.-.+=|.|.++.+
T Consensus 574 ~~pk~~a~~~L~~lld~~---ls~------------~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 574 TEPKYLADYVLPPLLDST---LSK------------DASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred hhHHhhcccchhhhhhhh---cCC------------ChHHhhhhHHHHHHHHHH
Confidence 9888886 4677777764 221 233455555566666554
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=1.2 Score=50.34 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHh
Q 002789 437 QVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRY 516 (881)
Q Consensus 437 l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry 516 (881)
-+++.+.+-..+.++.+..=..++|+..+..++-...+... ....++.++..+..... .-+ ...++.+|-.
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK~llpsll~~l~~~kW---rtK---~aslellg~m 281 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VKLLLPSLLGSLLEAKW---RTK---MASLELLGAM 281 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hhHhhhhhHHHHHHHhh---hhH---HHHHHHHHHH
Confidence 35555656666655544555678999999999888887665 34566776666654211 111 2333344433
Q ss_pred HHHHhh-cCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhh-cchhhHHHHHHHhhh
Q 002789 517 MKFIQE-HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA-KLVPFIENILQSLQD 579 (881)
Q Consensus 517 ~~~l~~-~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~-~l~p~~~~il~~l~~ 579 (881)
..--.. +..+++.++..+. .-|.+.++.||..+-.++.+++.-.+. .+.++++.+++.+.+
T Consensus 282 ~~~ap~qLs~~lp~iiP~ls--evl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~d 344 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLS--EVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALAD 344 (569)
T ss_pred HHhchHHHHHHHhHhhHHHH--HHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcC
Confidence 322111 1223333333222 126788999999999999999998875 467888888888754
No 41
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.30 E-value=13 Score=43.01 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcC-----CChHHHHHHhhcccCCCCCCchhhhHHHHHHH
Q 002789 482 AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHT-----QYIPVVLAAFLDERGIHHPNVHVSRRASYLFM 556 (881)
Q Consensus 482 ~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~-----~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~ 556 (881)
..++++++..++. ..+.+.|.||....+++++.+..++... .++..||-.- +.+.-|.|-....-+++
T Consensus 794 kpylpqi~stiL~--rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEy-----lgeeypEvLgsILgAik 866 (1172)
T KOG0213|consen 794 KPYLPQICSTILW--RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEY-----LGEEYPEVLGSILGAIK 866 (1172)
T ss_pred ccchHHHHHHHHH--HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHh-----cCcccHHHHHHHHHHHH
Confidence 5677777776664 2355667889899999999999998743 2455555554 34556778887778888
Q ss_pred HHHHHhh-hcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhcc
Q 002789 557 RVVKLLK-AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 613 (881)
Q Consensus 557 ~~~~~~~-~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~ 613 (881)
.|+.... .++.|-+.+|+..+-++|.+.. .+-+.....-+|.+...
T Consensus 867 aI~nvigm~km~pPi~dllPrltPILknrh-----------eKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 867 AIVNVIGMTKMTPPIKDLLPRLTPILKNRH-----------EKVQENCIDLVGTIADR 913 (1172)
T ss_pred HHHHhccccccCCChhhhcccchHhhhhhH-----------HHHHHHHHHHHHHHHhc
Confidence 8887765 4467888888888888887542 22344556666766544
No 42
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.10 E-value=0.76 Score=46.97 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhccc
Q 002789 459 VEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDER 538 (881)
Q Consensus 459 ~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~ 538 (881)
.-.|+.++..++..+.... ..++..+++.|+. ..+++.+.|+.....++..+.+.....+..+...+. .
T Consensus 70 ~~~A~~~l~~l~~~l~~~~----~~~~~~~l~~Ll~--~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~-----~ 138 (228)
T PF12348_consen 70 SKTACQLLSDLARQLGSHF----EPYADILLPPLLK--KLGDSKKFIREAANNALDAIIESCSYSPKILLEILS-----Q 138 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGG----HHHHHHHHHHHHH--GGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHhHhH----HHHHHHHHHHHHH--HHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH-----H
Confidence 3344556666666665553 4456666666665 335566777766666666666554323333333333 3
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHhh---hcchh--hHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhcc
Q 002789 539 GIHHPNVHVSRRASYLFMRVVKLLK---AKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 613 (881)
Q Consensus 539 gl~~~~~~v~~~A~~~f~~~~~~~~---~~l~p--~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~ 613 (881)
|..+.++.+|..++..+..+.+..+ ..+.. .++.++..+..++... ..+-+..-.+++..+.+.
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-----------~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-----------DPEVREAARECLWALYSH 207 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS------------HHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC-----------CHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999998888 44533 3577777777766644 234444455555544443
No 43
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=13 Score=41.89 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCCh--HHHHHHhhcccCCCCCCchhhhHHHHHHHHHH
Q 002789 482 AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYI--PVVLAAFLDERGIHHPNVHVSRRASYLFMRVV 559 (881)
Q Consensus 482 ~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L--~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~ 559 (881)
-.+++.++..|+. ..+++++.|+...=.+++.+-.-++..|..+ +.+.+.++ ...+.+++.+|..|..-+.-|+
T Consensus 203 ~~yl~~~ldGLf~--~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv--~~l~ss~~~iq~~al~Wi~efV 278 (675)
T KOG0212|consen 203 ISYLPSLLDGLFN--MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLV--PHLQSSEPEIQLKALTWIQEFV 278 (675)
T ss_pred HhcchHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcc--ccccCCcHHHHHHHHHHHHHHh
Confidence 4556666666655 4578999997544446777777677777652 22343333 3467788999999999999999
Q ss_pred HHhhhcchhhHHHHHHHhhhhhhcc
Q 002789 560 KLLKAKLVPFIENILQSLQDTIARF 584 (881)
Q Consensus 560 ~~~~~~l~p~~~~il~~l~~~l~~~ 584 (881)
+-.+..+.||+..++..+-+++...
T Consensus 279 ~i~g~~~l~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 279 KIPGRDLLLYLSGILTAILPCLSDT 303 (675)
T ss_pred cCCCcchhhhhhhhhhhcccCCCCC
Confidence 9999999999999999998887754
No 44
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.62 E-value=16 Score=41.50 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHH-hcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHH
Q 002789 415 VEYRKDLLVLLRSVG-RVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLL 493 (881)
Q Consensus 415 ~~~R~~~~~~l~~i~-~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~ 493 (881)
.+.|+..-+++..|+ .++|++++..+++-+.-. +-+.+=..--++..+||.|.. .+.+|.+|+.-
T Consensus 744 KeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq-------eRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY- 809 (975)
T COG5181 744 KEIRRNATETFGCISRAIGPQDVLDILLNNLKVQ-------ERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDY- 809 (975)
T ss_pred HHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH-------HHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcc-
Confidence 458899999999998 569999888876544421 111111222355667777754 34566655421
Q ss_pred hCCCCCCCChhHHHHHHHHHHHhHHHHhh-cCCC---hHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhc
Q 002789 494 QTKLPCHSNRLVALVYLETVTRYMKFIQE-HTQY---IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 565 (881)
Q Consensus 494 ~~~~~~~~~p~v~~~~~~~igry~~~l~~-~~~~---L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~ 565 (881)
..|+--|+.-.+..++=+.+|+.. .-+| +.|.|..- +.+.++..|.-|...+..++-.|..-
T Consensus 810 -----~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDA-----ltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 810 -----ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDA-----LTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred -----cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh-----hcccchHHHHHHHHHHHHHhcCCCCc
Confidence 233333443332222222222222 1233 33444433 45567778888999999999988753
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.03 E-value=21 Score=41.24 Aligned_cols=346 Identities=12% Similarity=0.138 Sum_probs=159.1
Q ss_pred HHHHHHH-hcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhh----ccchHHHHHHHHHHhCCC
Q 002789 423 VLLRSVG-RVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR----TGAGHLSELVPMLLQTKL 497 (881)
Q Consensus 423 ~~l~~i~-~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~----~~~~~l~~ll~~l~~~~~ 497 (881)
++++.+. ...|....+-+.+.+...+.+ .+-..++.++..+..+.+ ..... .....++.++..+
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h---~~~~Vr~l~l~~l~~~~~---~~~~~~~~~~~~~l~~~i~~~L----- 128 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTH---PSPKVRRLALKQLGRIAR---HSEGAAQLLVDNELLPLIIQCL----- 128 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhc---CCHHHHHHhcCccHHHHHHHHH-----
Confidence 4455543 446666667777777777764 444566655554444332 22110 0233444444433
Q ss_pred CCCCChhHHHHHHHHHHHhHH---HHhh-cCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHH--
Q 002789 498 PCHSNRLVALVYLETVTRYMK---FIQE-HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE-- 571 (881)
Q Consensus 498 ~~~~~p~v~~~~~~~igry~~---~l~~-~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~-- 571 (881)
.+++..|+..+..++.+.++ .+.. -+..+...|..+ +..++..+|-|+..++.++++.....+. ++.
T Consensus 129 -~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l-----~~~~~~~vR~Rv~el~v~i~~~S~~~~~-~~~~s 201 (503)
T PF10508_consen 129 -RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSL-----MSQSSDIVRCRVYELLVEIASHSPEAAE-AVVNS 201 (503)
T ss_pred -cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHH-----HhccCHHHHHHHHHHHHHHHhcCHHHHH-HHHhc
Confidence 45667776555555555443 2211 011113334444 3445678999999999999876654442 111
Q ss_pred HHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchh
Q 002789 572 NILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEES 651 (881)
Q Consensus 572 ~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~ 651 (881)
.+++.+-..+... ..--|+...|.++.+... + .-.+|+.. .-++.++-+.+..... |+ +
T Consensus 202 gll~~ll~eL~~d-----------DiLvqlnalell~~La~~---~--~g~~yL~~--~gi~~~L~~~l~~~~~--dp-~ 260 (503)
T PF10508_consen 202 GLLDLLLKELDSD-----------DILVQLNALELLSELAET---P--HGLQYLEQ--QGIFDKLSNLLQDSEE--DP-R 260 (503)
T ss_pred cHHHHHHHHhcCc-----------cHHHHHHHHHHHHHHHcC---h--hHHHHHHh--CCHHHHHHHHHhcccc--CC-c
Confidence 2333333222211 111366778888777663 1 22445544 2344444444443221 21 0
Q ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHh-hCcccc-c
Q 002789 652 TAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT-LGASVF-P 729 (881)
Q Consensus 652 ~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~-lg~~~~-p 729 (881)
...+ .+...+...+.++.. .+. .+...|..++..+...++ ..+...+......+..+..+ -|..++ -
T Consensus 261 ~~~~-~l~g~~~f~g~la~~-~~~-------~v~~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igst~~G~~~L~~ 329 (503)
T PF10508_consen 261 LSSL-LLPGRMKFFGNLARV-SPQ-------EVLELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGSTVEGKQLLLQ 329 (503)
T ss_pred ccch-hhhhHHHHHHHHHhc-ChH-------HHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 1111 133333444555443 121 234455555555554433 34455665556666655432 122222 1
Q ss_pred cHHHHHHHHHcc----C--ChhhH-HHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHH-H
Q 002789 730 YLPKALEQLLAE----S--EPKEM-AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEI-R 801 (881)
Q Consensus 730 ~lp~~~~~ll~~----~--~~~~~-~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~-~ 801 (881)
--++-+..++.. . .+.++ ...|..++.+.........+-+. .+.+..|+.+...... . .--+-. .
T Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~----~~~~~w~~~~~~~~~~-~--~l~~~~~q 402 (503)
T PF10508_consen 330 KQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL----SITESWYESLSGSPLS-N--LLMSLLKQ 402 (503)
T ss_pred hcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH----HHHHHHHHHhcCCchH-H--HHHHHhcC
Confidence 112222222222 1 11122 35566666665433321111111 2222223333221100 0 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccc
Q 002789 802 EVQELQRTLYTFLHVIATHDLSSV 825 (881)
Q Consensus 802 ~~~dl~~~~~~ll~~i~~~~~~~~ 825 (881)
..||+|-+.|+++..++.+.+..-
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~ 426 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQR 426 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHH
Confidence 358999999999999999866544
No 46
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.79 E-value=0.19 Score=38.10 Aligned_cols=54 Identities=24% Similarity=0.125 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHH
Q 002789 456 VEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTR 515 (881)
Q Consensus 456 w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igr 515 (881)
|+.+++|+.+++.+++..++.. ..++++++..|.. ...++++.||...++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~----~~~~~~~~~~L~~--~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL----QPYLPELLPALIP--LLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH----HHHHHHHHHHHHH--HTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHH----HHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHhc
Confidence 7778888776666666665554 4577777777764 3467888999888888886
No 47
>PRK09687 putative lyase; Provisional
Probab=92.47 E-value=12 Score=39.43 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=117.4
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRE 84 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~ 84 (881)
...+..+.++ |...|..|...|.++. .++.+..+..++.+ .++.+|.+|+.+|... .. +... +.
T Consensus 26 ~~L~~~L~d~----d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~-~d~~vR~~A~~aLg~l-g~-----~~~~----~~ 89 (280)
T PRK09687 26 DELFRLLDDH----NSLKRISSIRVLQLRG-GQDVFRLAIELCSS-KNPIERDIGADILSQL-GM-----AKRC----QD 89 (280)
T ss_pred HHHHHHHhCC----CHHHHHHHHHHHHhcC-cchHHHHHHHHHhC-CCHHHHHHHHHHHHhc-CC-----Cccc----hH
Confidence 3445556654 8889999999997665 68899999997764 6799999999998863 11 1110 12
Q ss_pred HHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-chhHHHHHHHHHHHHHHhh
Q 002789 85 SVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELI 163 (881)
Q Consensus 85 ~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~eEv~ 163 (881)
..+..+..... ... ...||...+.++..+-... +...+.++..+....... ..........|..+
T Consensus 90 ~a~~~L~~l~~-------~D~-d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----- 155 (280)
T PRK09687 90 NVFNILNNLAL-------EDK-SACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----- 155 (280)
T ss_pred HHHHHHHHHHh-------cCC-CHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----
Confidence 22333332210 011 5789889999988874332 223466666655554433 22333333333211
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHH
Q 002789 164 SLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELI 243 (881)
Q Consensus 164 ~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L 243 (881)
.-+..+..+...|. ..++.+...+..+|+.. .. .++..++.+...|
T Consensus 156 ------------------------~~~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~----~~---~~~~~~~~L~~~L 201 (280)
T PRK09687 156 ------------------------NDEAAIPLLINLLK---DPNGDVRNWAAFALNSN----KY---DNPDIREAFVAML 201 (280)
T ss_pred ------------------------CCHHHHHHHHHHhc---CCCHHHHHHHHHHHhcC----CC---CCHHHHHHHHHHh
Confidence 01223344444454 35678888888888864 11 2356778888888
Q ss_pred hhCCCChhHHHHHHHHHHHH
Q 002789 244 LADGLPEQFRGAAVGCVLAV 263 (881)
Q Consensus 244 ~~~~~~~~~~~~a~~~l~~i 263 (881)
. ++++.+|..|+..|..+
T Consensus 202 ~--D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 202 Q--DKNEEIRIEAIIGLALR 219 (280)
T ss_pred c--CCChHHHHHHHHHHHcc
Confidence 8 56889999999888663
No 48
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.46 E-value=2.8 Score=42.79 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=77.4
Q ss_pred CCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCcc
Q 002789 540 IHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPE 619 (881)
Q Consensus 540 l~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~ 619 (881)
+.+....|...||.++..++..++..+.||++.++..+-..+.... .--+....+++..++...+
T Consensus 62 l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~-----------~~i~~~a~~~L~~i~~~~~---- 126 (228)
T PF12348_consen 62 LSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSK-----------KFIREAANNALDAIIESCS---- 126 (228)
T ss_dssp S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG--------------HHHHHHHHHHHHHHHTTS-----
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHcccc-----------HHHHHHHHHHHHHHHHHCC----
Confidence 4555667899999999999999999999999999988766554321 1122334555555555432
Q ss_pred chHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHHHhh---cccCCCCCCCCcccHHHHHHHHHHHH
Q 002789 620 KQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALS---KGFNERLVTSSRPAIGLMFKQTLDVL 695 (881)
Q Consensus 620 ~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~l~---k~f~~~~~~~~~~~~~~if~~~~~~~ 695 (881)
+...++.+.+.. . ... .+.+.... +..+..++...+ ..+. -...+.++.+.+
T Consensus 127 ----~~~~~~~~~l~~---~----~~~---Kn~~vR~~~~~~l~~~l~~~~~~~~~l~----------~~~~~~~l~~~l 182 (228)
T PF12348_consen 127 ----YSPKILLEILSQ---G----LKS---KNPQVREECAEWLAIILEKWGSDSSVLQ----------KSAFLKQLVKAL 182 (228)
T ss_dssp ----H--HHHHHHHHH---H----TT----S-HHHHHHHHHHHHHHHTT-----GGG------------HHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHH---H----HhC---CCHHHHHHHHHHHHHHHHHccchHhhhc----------ccchHHHHHHHH
Confidence 111121111111 1 111 11222222 333333444333 1111 123456677777
Q ss_pred HHHhhcCCCChhHhhHHHHHHHHHHHhhCccc
Q 002789 696 LQILVVFPKVEPLRCKVTSFIHRMVDTLGASV 727 (881)
Q Consensus 696 ~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~ 727 (881)
...+. ..+..+|++.+.+|..+....|...
T Consensus 183 ~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 183 VKLLS--DADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHCC--CCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 66665 4567899999999998877766543
No 49
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.05 E-value=0.11 Score=34.11 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.0
Q ss_pred CCCCCchhhhHHHHHHHHHHHHh
Q 002789 540 IHHPNVHVSRRASYLFMRVVKLL 562 (881)
Q Consensus 540 l~~~~~~v~~~A~~~f~~~~~~~ 562 (881)
+.+++++||..|+++|.+|++.|
T Consensus 9 l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 9 LNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHhhC
Confidence 57899999999999999999865
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=31 Score=40.67 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHH-hcChhh--HHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHH
Q 002789 417 YRKDLLVLLRSVG-RVAPEV--TQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLL 493 (881)
Q Consensus 417 ~R~~~~~~l~~i~-~~~~~~--~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~ 493 (881)
||.++..-+..++ ...|+. .++.+...+..+-+-.+..-|+ .++..++++.++..+ .....+...+.
T Consensus 401 ~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~------nll~LIa~~~~e~~~----y~~~rLy~a~~ 470 (866)
T KOG1062|consen 401 FKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVN------NLLRLIANAFQELHE----YAVLRLYLALS 470 (866)
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHH------HHHHHHhcCCcchhh----HHHHHHHHHHh
Confidence 4444444444444 456653 3344444444332211223355 667778888665541 22222322222
Q ss_pred hCCCCCCCChhHHHHHHHHHHHhHHHHhhc----------CCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhh
Q 002789 494 QTKLPCHSNRLVALVYLETVTRYMKFIQEH----------TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 563 (881)
Q Consensus 494 ~~~~~~~~~p~v~~~~~~~igry~~~l~~~----------~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~ 563 (881)
.+.......+.+..-+.|+||.|.+++-.. ++.+-.++..++. -+.+...++..|..++.|+.....
T Consensus 471 ~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~---~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 471 EDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLM---SHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHH---hccchHHHHHHHHHHHHHHHhhcc
Confidence 211112233333444557999999988652 2345555656553 233456788889999998886654
Q ss_pred hcchhhHHHHHHHhh
Q 002789 564 AKLVPFIENILQSLQ 578 (881)
Q Consensus 564 ~~l~p~~~~il~~l~ 578 (881)
.. .+-++.++..+.
T Consensus 548 s~-~~ri~~lI~~~~ 561 (866)
T KOG1062|consen 548 SS-SERIKQLISSYK 561 (866)
T ss_pred cc-HHHHHHHHHHhc
Confidence 43 445555555543
No 51
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=40 Score=41.63 Aligned_cols=95 Identities=18% Similarity=0.341 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhcchH-HHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccC
Q 002789 751 LVLLNQLICKFNTLVH-DILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSP 829 (881)
Q Consensus 751 L~l~~~li~~~~~~~~-~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~ 829 (881)
|--++.++.+|+..+. +.+..++..+. ..|.. ..|+++++...|+..++..- +...+
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~----~~L~s---------------~sreI~kaAI~fikvlv~~~-pe~~l-- 863 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVC----LYLAS---------------NSREIAKAAIGFIKVLVYKF-PEECL-- 863 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHH----HHHhc---------------CCHHHHHHHHHHHHHHHHcC-CHHHH--
Confidence 6677888888887553 34443333322 44432 45899999999999888866 44444
Q ss_pred CCcCChHHHHHHHHHhhcCCCCccchhHhhHHHHHHHHhhhhH
Q 002789 830 KSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFS 872 (881)
Q Consensus 830 ~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~ 872 (881)
+++++.+|.+++.+..+|+--...|+-. ++-.++-.|+
T Consensus 864 --~~~~~~LL~sll~ls~d~k~~~r~Kvr~---LlekLirkfg 901 (1176)
T KOG1248|consen 864 --SPHLEELLPSLLALSHDHKIKVRKKVRL---LLEKLIRKFG 901 (1176)
T ss_pred --hhhHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHhC
Confidence 3478899999997655554444344333 6666665554
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=40 Score=41.63 Aligned_cols=325 Identities=14% Similarity=0.117 Sum_probs=156.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccc------cccccccccccccHHHHHHHHhhCCCChhHHHHH
Q 002789 183 AMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYI------SWIDINLIANDAFIPLLFELILADGLPEQFRGAA 256 (881)
Q Consensus 183 ~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i------~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a 256 (881)
-|+.. ++++.+.++.++.. .+++..+++.++.||+..+ .|-..+- -..+..++.+.. +..|.+|.+|
T Consensus 86 vL~~k-Fs~~~~~l~~~~~~-~stn~svlr~~iscL~~lLraQd~~aW~~~~t---~~~~~~il~~~~--h~~pkvRk~a 158 (1176)
T KOG1248|consen 86 VLQAK-FSDTLNILAPFLTA-ESTNGSVLRLAISCLEDLLRAQDASAWSYSST---KTELFGILAFAA--HKKPKVRKAA 158 (1176)
T ss_pred HHHHH-HHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHcchhhhccccH---HHHHHHHHHHHh--cCchHHHHHH
Confidence 34445 78888888887773 3566778888888887654 5752111 112222222222 4689999999
Q ss_pred HHHHHHHHhcCC--ChhhhHHHHHH----hh-hhhhccccCCCccHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 002789 257 VGCVLAVVSKRM--DPQSKLNLLQT----LQ-ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASK 329 (881)
Q Consensus 257 ~~~l~~ii~~~~--~~~~k~~ll~~----l~-l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (881)
.+.+..++.... .+..+...... ++ +..... ..+. +..+..+ .+++. .+.+ .. .
T Consensus 159 ~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~---~a~~-------t~v~~~L--~Ll~~--~~~~---~p--~ 219 (1176)
T KOG1248|consen 159 QRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLG---SAEN-------TTVLRSL--MLLRD--VLST---FP--R 219 (1176)
T ss_pred HHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhc---hHHH-------HHHHHHH--HHHHH--hhcc---CC--H
Confidence 999999997642 22222222211 11 111111 0111 1111111 11111 0000 00 1
Q ss_pred HHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhccCcccccccccCCCCChH
Q 002789 330 KLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIE 409 (881)
Q Consensus 330 ~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~ee 409 (881)
..+..+-..+|.++...+-.+...++.. +-..+++.+. ........+++.++ |.|-+...
T Consensus 220 ~li~sl~e~lL~i~~~s~v~v~~~~~q~---l~~lf~~~~~--~l~a~~~a~lL~al---~~l~ps~~------------ 279 (1176)
T KOG1248|consen 220 PLIKSLCEVLLNITTESPVLVLLEVLQC---LHSLFKKHPT--ALAAELNARLLTAL---MTLSPSEN------------ 279 (1176)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHH---HHHHHhcCCC--cchHHHHHHHHHHH---HHhCCCcc------------
Confidence 2345566667777765543333333332 2233344332 11234556666555 44523221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHH
Q 002789 410 EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV 489 (881)
Q Consensus 410 d~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll 489 (881)
|.-.-..+-+-+.+..+.++...++..+..+...+.-.++ ...+..++- .....+.+
T Consensus 280 D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t------------------~~~s~~~e~-----~q~a~q~l 336 (1176)
T KOG1248|consen 280 DDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFT------------------ILESLIEEL-----VQAASQSL 336 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHH------------------HHhcccHHH-----HHHHHHHH
Confidence 1112233445566666777777776555443332221111 111111111 12222222
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhh
Q 002789 490 PMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 569 (881)
Q Consensus 490 ~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~ 569 (881)
.-+++..+ .|--.. .++ .+..+++ -+-..+.+.+...+..+++.|+++-.||
T Consensus 337 ~~il~~sv------~~~~~~---c~~--------------~~~~~l~-----~kf~~~~~~ilqi~s~~fek~G~~s~~~ 388 (1176)
T KOG1248|consen 337 KEILKESV------TVIDAL---CSK--------------QLHSLLD-----YKFHAVWRFILQILSALFEKCGELSGPE 388 (1176)
T ss_pred HHHhcccC------cccHHH---HHH--------------HHHHHHc-----chHHHHHHHHHHHHHHHHHHhhhhcCHH
Confidence 22332111 110011 011 3444432 2334567777788888999999988999
Q ss_pred HHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCC
Q 002789 570 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED 615 (881)
Q Consensus 570 ~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~ 615 (881)
+-.-++.+...-... .+.....+-++||.-|.+.+
T Consensus 389 l~~~L~~l~~lr~~~-----------d~~~~~~ld~~IGSAV~AmG 423 (1176)
T KOG1248|consen 389 LTKTLEGLCDLRASP-----------DFFHKLQLDQCIGSAVRAMG 423 (1176)
T ss_pred HHHHHHHHHHhhcCC-----------CCccHHHHHHHHHHHHHhhC
Confidence 888888876543322 23345578889998888765
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.32 E-value=0.3 Score=43.81 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHHhhhcCcchhhhc-cchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhh------cCCC
Q 002789 454 RNVEEVEAALTLLYALGESMSEEAMRT-GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQY 526 (881)
Q Consensus 454 ~~w~~~EaaL~~l~~i~e~~~~~~~~~-~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~------~~~~ 526 (881)
.+|..++.++.+++.++...++....- ....++.++..+ .++++.|+...++++++.+..-.. ....
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 92 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL------KSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG 92 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH------hCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCC
Confidence 458999999999988887643322100 123445555533 346788877777788887754322 2234
Q ss_pred hHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHH
Q 002789 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 560 (881)
Q Consensus 527 L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~ 560 (881)
++.++. + +.+.+..++..|+.+|.++|+
T Consensus 93 l~~l~~-~-----l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 93 VPKLVN-L-----LDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred hHHHHH-H-----HhcCCHHHHHHHHHHHHHhhC
Confidence 444443 3 344577899999999998873
No 54
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=35 Score=39.74 Aligned_cols=81 Identities=10% Similarity=0.136 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhc
Q 002789 486 SELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 565 (881)
Q Consensus 486 ~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~ 565 (881)
+.++..| +...|-||.-+ |+-..+.|-..|+-|.+....+. -.+.++.|+|+++|...++-+++.-++.
T Consensus 147 ~Dv~tLL------~sskpYvRKkA---Il~lykvFLkYPeAlr~~FprL~--EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 147 DDVFTLL------NSSKPYVRKKA---ILLLYKVFLKYPEALRPCFPRLV--EKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHH------hcCchHHHHHH---HHHHHHHHHhhhHhHhhhHHHHH--HhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 4555544 23556665433 23334445556777777777776 3488999999999999999999999887
Q ss_pred chhhHHHHHHHh
Q 002789 566 LVPFIENILQSL 577 (881)
Q Consensus 566 l~p~~~~il~~l 577 (881)
..|+.|.++.-+
T Consensus 216 yL~LAP~ffkll 227 (877)
T KOG1059|consen 216 YLQLAPLFYKLL 227 (877)
T ss_pred cccccHHHHHHH
Confidence 777777766654
No 55
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=43 Score=40.56 Aligned_cols=101 Identities=15% Similarity=0.287 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhC---ccccccHHHHHHHHHccCChhhHHHHHHHHHHHHHHh
Q 002789 685 GLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG---ASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKF 761 (881)
Q Consensus 685 ~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg---~~~~p~lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~ 761 (881)
..++.++++....++.+ .+.-+||=..-.+++-.+.... +.+.|++|++++.++.-.+..+....-.++..+|.+|
T Consensus 497 ~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~f 575 (1010)
T KOG1991|consen 497 PNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKF 575 (1010)
T ss_pred hHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 35677788888777764 2233455334444555554433 4488999999999987655444344556778899999
Q ss_pred hcchHHHhhhhHHHHHHHHHhhccC
Q 002789 762 NTLVHDILDEVFPAIAGRIFNIIPR 786 (881)
Q Consensus 762 ~~~~~~~l~~ll~~l~~~~~~~l~~ 786 (881)
+.++.|+-..+...+.+.....+..
T Consensus 576 seElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 576 SEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHhc
Confidence 9999888888888887777777765
No 56
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.04 E-value=41 Score=40.26 Aligned_cols=227 Identities=15% Similarity=0.157 Sum_probs=114.4
Q ss_pred chHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHh----hcCC-ChHHHHHHhhcccCCCCCCchhhhHHHHHHH
Q 002789 482 AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ----EHTQ-YIPVVLAAFLDERGIHHPNVHVSRRASYLFM 556 (881)
Q Consensus 482 ~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~----~~~~-~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~ 556 (881)
.+.+|.++..|++ ........|....||+++.-.++=. ...+ ..|-....|+ .....|-|.+-+-..|.
T Consensus 525 ~~~~p~ild~L~q--las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~----k~s~DP~V~~~~qd~f~ 598 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQ--LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL----KYSEDPQVASLAQDLFE 598 (1005)
T ss_pred cccchHHHHHHHH--HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH----HhcCCchHHHHHHHHHH
Confidence 4556666666664 3233334455667777776655322 1222 2344454554 23456688888999999
Q ss_pred HHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHH
Q 002789 557 RVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQV 636 (881)
Q Consensus 557 ~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l 636 (881)
.+++. .....|+.+-.+..+-+.+....- ..+...+-...+-+.+++.+.+ | +--..++...++|+.+-
T Consensus 599 el~q~-~~~~g~m~e~~iPslisil~~~~~-------~~~~~l~~~aidvLttvvr~tp-~-pL~~~l~~~~FpaVak~- 667 (1005)
T KOG2274|consen 599 ELLQI-AANYGPMQERLIPSLISVLQLNAD-------KAPAGLCAIAIDVLTTVLRNTP-S-PLPNLLICYAFPAVAKI- 667 (1005)
T ss_pred HHHHH-HHhhcchHHHHHHHHHHHHcCccc-------ccCchhhHHHHHHHHHHHhcCC-C-CccHHHHHHHhHHhHhh-
Confidence 99873 222334444444444333332110 0123455567777888888764 3 33345666666665442
Q ss_pred HHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHH
Q 002789 637 QTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFI 716 (881)
Q Consensus 637 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~ 716 (881)
. ....|.+..+.- -+|+-..++ ++... .++....+..- ++.+|+++.+.|+.- ..+....+.
T Consensus 668 ---t---lHsdD~~tlQ~~--~EcLra~Is---~~~eq-~~t~~~e~g~~-~~yImqV~sqLLdp~-----~sds~a~~V 729 (1005)
T KOG2274|consen 668 ---T---LHSDDHETLQNA--TECLRALIS---VTLEQ-LLTWHDEPGHN-LWYIMQVLSQLLDPE-----TSDSAAAFV 729 (1005)
T ss_pred ---e---eecCChHHHHhH--HHHHHHHHh---cCHHH-HHhhccCCCcc-HHHHHHHHHHHcCCc-----cchhHHHHH
Confidence 2 111222222211 222221111 11110 11111111112 778888888777622 222344455
Q ss_pred HHHH----HhhCccccccHHHHHHHHHccCC
Q 002789 717 HRMV----DTLGASVFPYLPKALEQLLAESE 743 (881)
Q Consensus 717 ~~~v----~~lg~~~~p~lp~~~~~ll~~~~ 743 (881)
.|++ .-.|..+.|.+..++..++....
T Consensus 730 G~lV~tLit~a~~el~~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 730 GPLVLTLITHASSELGPNLDQILRAVISRLQ 760 (1005)
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 5554 34677888888888877777654
No 57
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.03 E-value=29 Score=42.84 Aligned_cols=91 Identities=23% Similarity=0.275 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhh--------cCCChHHHH
Q 002789 460 EAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--------HTQYIPVVL 531 (881)
Q Consensus 460 EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~--------~~~~L~~vL 531 (881)
=+||.++..++..+.++ ..+..++++++. ...++.+.||.++++++.+.-.-.+. .|+||-|-|
T Consensus 441 ~~ALeLl~~lS~~i~de------~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 441 LAALELLQELSTYIDDE------VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred HHHHHHHHHHhhhcchH------HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 34566677777766654 345556666665 45788889999998888887665543 468888888
Q ss_pred HHhhcccCCCCCCchhhhHHHHHHHHHHHHh
Q 002789 532 AAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (881)
Q Consensus 532 ~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~ 562 (881)
..++ .+..+..||-.=+..+..|++..
T Consensus 513 ~~l~----~d~~~~~vRiayAsnla~LA~tA 539 (1431)
T KOG1240|consen 513 NHLL----NDSSAQIVRIAYASNLAQLAKTA 539 (1431)
T ss_pred Hhhh----ccCccceehhhHHhhHHHHHHHH
Confidence 8775 22244455555455566666554
No 58
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.65 E-value=36 Score=38.85 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCC-----hHHHHHHhhcccCCCCCCchhhhHHHHHHH
Q 002789 482 AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQY-----IPVVLAAFLDERGIHHPNVHVSRRASYLFM 556 (881)
Q Consensus 482 ~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~-----L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~ 556 (881)
..+++.+++.++. ....+.|-||....+++|.....++..-++ +..+|-.- +.+.-|.|-.....++.
T Consensus 599 kp~l~~ivStiL~--~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~-----lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 599 KPHLSMIVSTILK--LLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYEN-----LGEDYPEVLGSILKAIC 671 (975)
T ss_pred CcchHHHHHHHHH--HhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHh-----cCcccHHHHHHHHHHHH
Confidence 4567777776664 335566778888888999999999864432 33334333 34455667777767777
Q ss_pred HHHHHhh-hcchhhHHHHHHHhhhhhhcc
Q 002789 557 RVVKLLK-AKLVPFIENILQSLQDTIARF 584 (881)
Q Consensus 557 ~~~~~~~-~~l~p~~~~il~~l~~~l~~~ 584 (881)
.|....+ ..+.|-+..|+..+.+++.+.
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnk 700 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNK 700 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhh
Confidence 7776665 457788889998888888755
No 59
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.38 E-value=3.1 Score=40.59 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCCChhHHHHHHHHHHHhHH--HHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHH-hhhcchhhHHHHHH
Q 002789 499 CHSNRLVALVYLETVTRYMK--FIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-LKAKLVPFIENILQ 575 (881)
Q Consensus 499 ~~~~p~v~~~~~~~igry~~--~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~-~~~~l~p~~~~il~ 575 (881)
.+++|.||.+++.++.+... +++..++.+..++.. +.++++.||+.|...|..+.+. .+..+...+++++.
T Consensus 35 ~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~------l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 35 RDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKL------LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHH------HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 67899999888777776542 344444444444432 5678999999999999999988 66667778888888
Q ss_pred Hhhhh
Q 002789 576 SLQDT 580 (881)
Q Consensus 576 ~l~~~ 580 (881)
.+...
T Consensus 109 ~l~~~ 113 (178)
T PF12717_consen 109 SLNNC 113 (178)
T ss_pred HHhCc
Confidence 77554
No 60
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.16 E-value=0.6 Score=30.56 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=24.7
Q ss_pred cHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 002789 235 FIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (881)
Q Consensus 235 ~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~ 265 (881)
++|.+.++++ ++++++|.+|+.||.+++.
T Consensus 1 llp~l~~~l~--D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN--DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT---SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC--CCCHHHHHHHHHHHHHHHh
Confidence 4678889998 6799999999999999875
No 61
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.48 E-value=93 Score=41.90 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=98.6
Q ss_pred CcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHhhhccCCCCcCCCCChHHHHHHH
Q 002789 36 TPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRE-SVFSMVCCELVDGKSSMRVLESPAFIRNKL 114 (881)
Q Consensus 36 ~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~-~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl 114 (881)
+.++-.....+|... +.+++--++..|...... +.+.+..+.+ ..+..+.+... .+ ..-+++..
T Consensus 402 ~~daik~LV~LL~~~-~~evQ~~Av~aL~~L~~~-----~~e~~~aIi~~ggIp~LV~LL~-------s~--s~~iQ~~A 466 (2102)
T PLN03200 402 HAEAKKVLVGLITMA-TADVQEELIRALSSLCCG-----KGGLWEALGGREGVQLLISLLG-------LS--SEQQQEYA 466 (2102)
T ss_pred hccchhhhhhhhccC-CHHHHHHHHHHHHHHhCC-----CHHHHHHHHHcCcHHHHHHHHc-------CC--CHHHHHHH
Confidence 345555566666543 345555555555543321 2233333322 23344443320 01 34566777
Q ss_pred HHHHHHHHHhhcCCCC----hhhHHHHHHhhcCC-chhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHH-Hh
Q 002789 115 AQVLVTLIYFEYPLIW----SSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQ-QC 188 (881)
Q Consensus 115 ~~~l~~l~~~~~p~~W----p~~i~~l~~~~~~~-~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~-~~ 188 (881)
+.++..++...=.++| .+.++-|++++.++ ....+.....|..++-. ..+.++.+.. .+
T Consensus 467 ~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~---------------~~qir~iV~~aGA 531 (2102)
T PLN03200 467 VALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH---------------SEDIRACVESAGA 531 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---------------cHHHHHHHHHCCC
Confidence 7777777653211244 57788888888764 33444444555444320 0112233321 33
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 002789 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (881)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~ 266 (881)
++.++++ |. +++++....++.++.+.+.--+ .+.++.+..+|. .+++.....+++.+..++.-
T Consensus 532 IppLV~L----L~---sgd~~~q~~Aa~AL~nLi~~~d------~~~I~~Lv~LLl--sdd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 532 VPALLWL----LK---NGGPKGQEIAAKTLTKLVRTAD------AATISQLTALLL--GDLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHHHHH----Hh---CCCHHHHHHHHHHHHHHHhccc------hhHHHHHHHHhc--CCChhHHHHHHHHHHHHHhh
Confidence 5555544 43 4567777888888877644222 334566667776 45778888888888777663
No 62
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.12 E-value=49 Score=38.25 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=67.6
Q ss_pred HHHhhcCC-chhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHH
Q 002789 137 FLPQLNKG-SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVL 215 (881)
Q Consensus 137 l~~~~~~~-~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L 215 (881)
++++++.+ ....+...++|..+-+...- .+. .+++..++...|. +.++.+...++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~----------------~~l-----~~~~~~~L~~gL~---h~~~~Vr~l~l 98 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP----------------DSL-----LPQYQPFLQRGLT---HPSPKVRRLAL 98 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH----------------HHH-----HHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 55555543 44556666777666543321 000 3344444444554 46788888888
Q ss_pred HHhcccccccc--cccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 002789 216 DCMRRYISWID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (881)
Q Consensus 216 ~~l~~~i~wi~--~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~ 266 (881)
+.++..+.=-+ ...+.+.++++.+..++. +++.++...|+++|..+...
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~--~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 99 KQLGRIARHSEGAAQLLVDNELLPLIIQCLR--DPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHhcCCHHHHHHhcCccHHHHHHHHHc--CCcHHHHHHHHHHHHHHhCC
Confidence 88877654222 234466789999999998 56889999999999999864
No 63
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.07 E-value=36 Score=36.65 Aligned_cols=141 Identities=11% Similarity=0.241 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHh-hcCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHH
Q 002789 658 IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQIL-VVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALE 736 (881)
Q Consensus 658 ~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l-~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~ 736 (881)
+.....++.+++..+.+.. ..++..+.+..+..+ +.+.+.+..|.....+++.++...-+.+..+=|..+.
T Consensus 93 L~l~~~ii~kl~~~~~~~v--------~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~ 164 (319)
T PF08767_consen 93 LSLMATIINKLGELIQPQV--------PQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK 164 (319)
T ss_dssp HHHHHHHHHHHGGGCCCCH--------HHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH
T ss_pred HHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 5556666778877776653 566665555555444 4466678888888888888887543433332244444
Q ss_pred HHHcc----C--ChhhH-HHHHHHHHHHHHHhhc---c-hHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHH
Q 002789 737 QLLAE----S--EPKEM-AGFLVLLNQLICKFNT---L-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQE 805 (881)
Q Consensus 737 ~ll~~----~--~~~~~-~~~L~l~~~li~~~~~---~-~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~d 805 (881)
.++.. + ..+++ ..-|..+..++.+... + ...+..+-+..++..+|.++.... .......+..
T Consensus 165 ~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~-------Hk~gf~~q~~ 237 (319)
T PF08767_consen 165 LVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD-------HKSGFKLQSQ 237 (319)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT--------GGGHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc-------cHHHHHHHHH
Confidence 44432 1 12332 3456667777766665 2 235777777888888888875433 2222344555
Q ss_pred HHHHHHHH
Q 002789 806 LQRTLYTF 813 (881)
Q Consensus 806 l~~~~~~l 813 (881)
+....|.+
T Consensus 238 iL~~Lf~~ 245 (319)
T PF08767_consen 238 ILSNLFRL 245 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444444
No 64
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=54 Score=38.51 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=83.4
Q ss_pred HHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhccCcccccccccCCCCChHHHH
Q 002789 333 NEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEED 412 (881)
Q Consensus 333 ~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~ 412 (881)
+++.-=+|++++.++.++...++.+.++..+. .-+.++++.+-+....-.+ + +.+
T Consensus 316 ~~l~mDvLrvLss~dldvr~Ktldi~ldLvss------------rNvediv~~Lkke~~kT~~---------~----e~d 370 (948)
T KOG1058|consen 316 QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS------------RNVEDIVQFLKKEVMKTHN---------E----ESD 370 (948)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh------------ccHHHHHHHHHHHHHhccc---------c----ccc
Confidence 34444466778888999998888877765432 1244444444333332111 1 111
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHH
Q 002789 413 RMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPML 492 (881)
Q Consensus 413 ~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l 492 (881)
+=+.||+-+-..+.+++.-.|+..-.++.-++...-+ . +-+||...+..+.|.+..... -....+..++..+
T Consensus 371 ~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD------~-N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 371 DNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISD------S-NEAAASDVLMFVREAIEKFPN-LRASIIEKLLETF 442 (948)
T ss_pred cchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhcc------C-CHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhh
Confidence 3456999999999999988888666665554443322 1 134555556566665532210 0123334444433
Q ss_pred HhCCCCCCCChhHHHHHHHHHHHhHHHHh
Q 002789 493 LQTKLPCHSNRLVALVYLETVTRYMKFIQ 521 (881)
Q Consensus 493 ~~~~~~~~~~p~v~~~~~~~igry~~~l~ 521 (881)
.. + .-+.+....+|++|.|++-..
T Consensus 443 ~~--i---rS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 443 PQ--I---RSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hh--h---cccccchhHHHHHHHHHhhhH
Confidence 32 1 112233466679999987654
No 65
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.54 E-value=31 Score=38.67 Aligned_cols=211 Identities=13% Similarity=0.185 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHHHhc-CcchHHHH----HHHhc----cCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Q 002789 18 IDSMLKSQAVNFCQQIKE-TPSICRIC----IEKLS----LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFS 88 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~----~~lL~----~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~ 88 (881)
.|+.+|.....+|..+=. -++--... ..++. .......--=.+.++...|+.-=..+.++.+..+++.++.
T Consensus 145 ~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllP 224 (409)
T PF01603_consen 145 PDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLP 224 (409)
T ss_dssp STHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 599999999999888443 33322221 11111 1111111112344455544432236778888888777777
Q ss_pred HHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHhhhcCC
Q 002789 89 MVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSM-VIDMFCRVLNSLDDELISLDY 167 (881)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~-~~~~~L~iL~~l~eEv~~~~~ 167 (881)
+....+ - ..|- ..++.++..++.++ |.-=..++..++..+..... ...++|..+..+-+-+..
T Consensus 225 Lh~~~~--------~---~~y~-~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~--- 288 (409)
T PF01603_consen 225 LHKSPH--------L---SSYH-QQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPP--- 288 (409)
T ss_dssp GGGSTG--------G---GGTH-HHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--H---
T ss_pred HhcCCc--------H---HHHH-HHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCH---
Confidence 665432 1 3333 78888888888775 34344566666666655433 333556655544332211
Q ss_pred CCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhccc--ccccccccccccccHHHHHHHHhh
Q 002789 168 PRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRY--ISWIDINLIANDAFIPLLFELILA 245 (881)
Q Consensus 168 ~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~--i~wi~~~~~~~~~~l~~l~~~L~~ 245 (881)
+.+.. ....++..+..+++ +.+.++++.||....+- ++++.- ....+++.++..|..
T Consensus 289 --------------~~f~~-i~~~lf~~la~ci~---S~h~qVAErAl~~w~n~~~~~li~~---~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 289 --------------EEFQK-IMVPLFKRLAKCIS---SPHFQVAERALYFWNNEYFLSLISQ---NSRVILPIIFPALYR 347 (409)
T ss_dssp --------------HHHHH-HHHHHHHHHHHHHT---SSSHHHHHHHHGGGGSHHHHHHHHC---THHHHHHHHHHHHSS
T ss_pred --------------HHHHH-HHHHHHHHHHHHhC---CCCHHHHHHHHHHHCCHHHHHHHHh---ChHHHHHHHHHHHHH
Confidence 01111 15556666666655 45778888888776642 233211 113477777776642
Q ss_pred ---CCCChhHHHHHHHHHHHHHh
Q 002789 246 ---DGLPEQFRGAAVGCVLAVVS 265 (881)
Q Consensus 246 ---~~~~~~~~~~a~~~l~~ii~ 265 (881)
.+.+..++..|..++..+..
T Consensus 348 ~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 348 NSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp TTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 34577888888888876655
No 66
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.26 E-value=80 Score=39.60 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 002789 205 SSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (881)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~ 265 (881)
..++.+...+++.|..+- .+..++.|...|. ++++.+|..|+..|.++..
T Consensus 632 D~d~~VR~~Av~~L~~~~---------~~~~~~~L~~aL~--D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT---------PPGFGPALVAALG--DGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred CCCHHHHHHHHHHHhhhc---------chhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHh
Confidence 568899999999988642 2557788888887 5689999999999988754
No 67
>PTZ00429 beta-adaptin; Provisional
Probab=87.91 E-value=72 Score=38.65 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcChhhHHH-HHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhC
Q 002789 417 YRKDLLVLLRSVGRVAPEVTQV-FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (881)
Q Consensus 417 ~R~~~~~~l~~i~~~~~~~~l~-~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~ 495 (881)
.||...-++-.++..+|+.+.. -+.+.+...+. ..+-..+=.|+.++..+.+..+... ......+..++.
T Consensus 156 VRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~---D~dp~Vv~nAl~aL~eI~~~~~~~l-----~l~~~~~~~Ll~- 226 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN---DNNPVVASNAAAIVCEVNDYGSEKI-----ESSNEWVNRLVY- 226 (746)
T ss_pred HHHHHHHHHHHHHhhCcccccccchHHHHHHHhc---CCCccHHHHHHHHHHHHHHhCchhh-----HHHHHHHHHHHH-
Confidence 6787777777888888865421 22334444553 2556666777777777766443211 112222233332
Q ss_pred CCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHh
Q 002789 496 KLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (881)
Q Consensus 496 ~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~ 562 (881)
.+ ..-++--+...++++.+|.. ...+-...++..+. ..+.+.|+.|.-.|+.++..+...+
T Consensus 227 ~L-~e~~EW~Qi~IL~lL~~y~P---~~~~e~~~il~~l~--~~Lq~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 227 HL-PECNEWGQLYILELLAAQRP---SDKESAETLLTRVL--PRMSHQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred Hh-hcCChHHHHHHHHHHHhcCC---CCcHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHhcCcC
Confidence 11 11224445666677766532 12222334454444 2356778889999999988877544
No 68
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=65 Score=38.10 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCC
Q 002789 417 YRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTK 496 (881)
Q Consensus 417 ~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~ 496 (881)
.|+..+-.+-.++.++|+.-- .+.+.+...+.. ..--.+-+ ++.++-|.|++.. +.+..=...++. -
T Consensus 159 VRk~AA~AIpKLYsLd~e~k~-qL~e~I~~LLaD---~splVvgs---Av~AF~evCPerl-----dLIHknyrklC~-l 225 (968)
T KOG1060|consen 159 VRKTAAHAIPKLYSLDPEQKD-QLEEVIKKLLAD---RSPLVVGS---AVMAFEEVCPERL-----DLIHKNYRKLCR-L 225 (968)
T ss_pred HHHHHHHhhHHHhcCChhhHH-HHHHHHHHHhcC---CCCcchhH---HHHHHHHhchhHH-----HHhhHHHHHHHh-h
Confidence 689999999999999997643 566667777653 33334444 4567888888753 222222222221 0
Q ss_pred CCCCCChhHHHHHHHHHHHhHHH
Q 002789 497 LPCHSNRLVALVYLETVTRYMKF 519 (881)
Q Consensus 497 ~~~~~~p~v~~~~~~~igry~~~ 519 (881)
+++-+ .-=+.-.+.++.||++.
T Consensus 226 l~dvd-eWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 226 LPDVD-EWGQVVLINMLTRYARH 247 (968)
T ss_pred ccchh-hhhHHHHHHHHHHHHHh
Confidence 11111 00045556788899874
No 69
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.76 E-value=0.41 Score=36.25 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=35.3
Q ss_pred chhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhc
Q 002789 545 VHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIAR 583 (881)
Q Consensus 545 ~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~ 583 (881)
+.||..|+.+|.++++.+...+.||++.++..+..++..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d 39 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD 39 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999888764
No 70
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.70 E-value=83 Score=39.17 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 002789 209 EVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (881)
Q Consensus 209 ~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~ 266 (881)
+....+|+.+..+...++-+... +.++|.+..++. ++...+|..|++.|++++..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L-DRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL-DRVLPYFVHLLM--DSEADVRATALETLTELLAL 492 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH-hhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhh
Confidence 44556777777666666544332 578899999998 56889999999999999875
No 71
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.95 E-value=60 Score=39.10 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCCCCchhhhHHHHHHHHHHHHhhhcchh--hHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCC
Q 002789 540 IHHPNVHVSRRASYLFMRVVKLLKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVP 617 (881)
Q Consensus 540 l~~~~~~v~~~A~~~f~~~~~~~~~~l~p--~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~ 617 (881)
+.++++.+|++|...|....-.|...+.+ .+..+++.++.-+.... -.+..+..+++.++-...+|
T Consensus 52 l~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~rldd~~------------la~~~~l~~l~aL~~~~~~p 119 (1030)
T KOG1967|consen 52 LTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNRLDDSA------------LAKEAVLGGLKALILMSKLP 119 (1030)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhHHHHhh------------hhHHHHHHHHHHHHHhhcCC
Confidence 56788999999999999999888886543 78888988876555331 12333444566666655567
Q ss_pred ccchHHHHHHhhHH
Q 002789 618 PEKQSDYLSSLLTP 631 (881)
Q Consensus 618 ~~~~~~~l~~ll~p 631 (881)
+......++.+++-
T Consensus 120 ~~~ivsllkalfq~ 133 (1030)
T KOG1967|consen 120 DNFIVSLLKALFQE 133 (1030)
T ss_pred chHHHHHHHHHHHh
Confidence 66666666666553
No 72
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=79 Score=37.95 Aligned_cols=72 Identities=11% Similarity=0.211 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 002789 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (881)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~ 266 (881)
+++.++++..+= ++.-++++...+...++++..|..-....-+..++++++.|. +++....++..+..+...
T Consensus 506 i~rl~~~~asik--~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh----~sk~s~q~i~tl~tlC~~ 577 (982)
T KOG2022|consen 506 IPRLFETSASIK--LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH----NSKESEQAISTLKTLCET 577 (982)
T ss_pred HHHHHHhccccc--cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc----CchHHHHHHHHHHHHHHh
Confidence 566665554331 123388999999999999999975443333568999999997 666667777766666554
No 73
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.55 E-value=31 Score=37.98 Aligned_cols=242 Identities=17% Similarity=0.236 Sum_probs=125.7
Q ss_pred chhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHH
Q 002789 545 VHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDY 624 (881)
Q Consensus 545 ~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~ 624 (881)
++|+..+|..+.+++++....+.||++.+++.+-+++..... .......+..|+..+-+... .+ .
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~---------~~~~D~lv~~al~FL~~v~~-~~----~- 174 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQ---------QPKYDILVSKALQFLSSVAE-SP----H- 174 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--S---------SGGGHHHHHHHHHHHHHHHT-SH----H-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------cccccHHHHHHHHHHHHHHc-ch----h-
Confidence 478999999999999999999999999999998887764310 11222234444443322211 00 0
Q ss_pred HHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHH-HHhhcCC
Q 002789 625 LSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLL-QILVVFP 703 (881)
Q Consensus 625 l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~-~~l~~~~ 703 (881)
...++ .+++..+.+ +.+++... + .|.... .+.|.+-=.-|. +-++. .
T Consensus 175 ~~~lf-----------------~~~~~L~~I--ie~VI~Pn--l--~~~e~D--------~ElfEddP~EYIrrd~e~-s 222 (370)
T PF08506_consen 175 HKNLF-----------------ENKPHLQQI--IEKVIFPN--L--CLREED--------EELFEDDPEEYIRRDLEG-S 222 (370)
T ss_dssp HHTTT------------------SHHHHHHH--HHHTHHHH--H--S--HHH--------HHHHHHSHHHHHHHHSCS-S
T ss_pred HHHHh-----------------CCHHHHHHH--HHHhccCc--c--CCCHHH--------HHHHccCHHHHHHhhccc-c
Confidence 00000 000111111 11111111 0 111111 344443322232 22332 3
Q ss_pred CChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccC------ChhhHHHHHHHHHHHHHHhhcc---hH--HHhhhh
Q 002789 704 KVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES------EPKEMAGFLVLLNQLICKFNTL---VH--DILDEV 772 (881)
Q Consensus 704 ~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~------~~~~~~~~L~l~~~li~~~~~~---~~--~~l~~l 772 (881)
+...-|.+...+++.++...+..+.+.+...+..++..| +.+.-...+.+++.+..+-... +. +.+-++
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 344567788888888888888888888888888888754 2344467888888888765321 11 111123
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCCCc
Q 002789 773 FPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDY 852 (881)
Q Consensus 773 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~ 852 (881)
-..+.+++.+-+..+. + .+|=++-....++..+-..- + +..+..++..++++ +.+++.
T Consensus 303 ~~Ff~~~v~peL~~~~---~---------~~piLka~aik~~~~Fr~~l-~--------~~~l~~~~~~l~~~-L~~~~~ 360 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDV---N---------SHPILKADAIKFLYTFRNQL-P--------KEQLLQIFPLLVNH-LQSSSY 360 (370)
T ss_dssp HHHHHHHTCHHHH-SS-------------S-HHHHHHHHHHHHHHGGGS----------HHHHHHHHHHHHHH-TTSS-H
T ss_pred HHHHHHHhHHHhcccC---C---------CCcchHHHHHHHHHHHHhhC-C--------HHHHHHHHHHHHHH-hCCCCc
Confidence 3334444445444211 1 57889999999998764331 1 23566788888855 444554
Q ss_pred cch
Q 002789 853 LVR 855 (881)
Q Consensus 853 ~~~ 855 (881)
.+.
T Consensus 361 vv~ 363 (370)
T PF08506_consen 361 VVH 363 (370)
T ss_dssp HHH
T ss_pred chh
Confidence 443
No 74
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=96 Score=36.86 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHH
Q 002789 434 EVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETV 513 (881)
Q Consensus 434 ~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~i 513 (881)
++++-.+.+.+++-+.+ . +..++++ ++.++|..++.++ ..+..|++-. |+ +.++|.||.-+.-+.
T Consensus 102 qdvllLltNslknDL~s---~--nq~vVgl-AL~alg~i~s~Em---ardlapeVe~-Ll-----~~~~~~irKKA~Lca 166 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNS---S--NQYVVGL-ALCALGNICSPEM---ARDLAPEVER-LL-----QHRDPYIRKKAALCA 166 (866)
T ss_pred hHHHHHHHHHHHhhccC---C--CeeehHH-HHHHhhccCCHHH---hHHhhHHHHH-HH-----hCCCHHHHHHHHHHH
Confidence 34444555555554433 2 2334443 4567888888887 2344455544 43 358888865442232
Q ss_pred HHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcc---hhhHHHHHHHhhhhhhcccccCcc
Q 002789 514 TRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL---VPFIENILQSLQDTIARFTSMNYA 590 (881)
Q Consensus 514 gry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l---~p~~~~il~~l~~~l~~~~~p~~~ 590 (881)
.+++..-|+.....+..+- ..+.+.+++|-..+...+..+|+.....+ --.++.++..+.++....-+|+.+
T Consensus 167 ---~r~irK~P~l~e~f~~~~~--~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd 241 (866)
T KOG1062|consen 167 ---VRFIRKVPDLVEHFVIAFR--KLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD 241 (866)
T ss_pred ---HHHHHcCchHHHHhhHHHH--HHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Confidence 3566777877766666553 33677888998888888999998854333 234566666666665544445555
Q ss_pred cccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhH
Q 002789 591 SKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLT 630 (881)
Q Consensus 591 ~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~ 630 (881)
.+..-.+--|..+..-++. ++. +..+..+.+.-+|.
T Consensus 242 v~gi~dPFLQi~iLrlLri-LGq---~d~daSd~M~DiLa 277 (866)
T KOG1062|consen 242 VHGISDPFLQIRILRLLRI-LGQ---NDADASDLMNDILA 277 (866)
T ss_pred ccCCCchHHHHHHHHHHHH-hcC---CCccHHHHHHHHHH
Confidence 4433345556666655543 333 22334444544444
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=83.52 E-value=1e+02 Score=36.33 Aligned_cols=370 Identities=16% Similarity=0.167 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-----chhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 002789 107 PAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-----SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIK 181 (881)
Q Consensus 107 ~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~-----~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk 181 (881)
..+||.-.|.+++.++....|-+-.. |+.++..+..+ ....-.+|+....|....
T Consensus 566 ~qkVR~itAlalsalaeaa~Pygie~-fDsVlkpLwkgir~hrgk~laafLkAigyliplm------------------- 625 (1172)
T KOG0213|consen 566 QQKVRTITALALSALAEAATPYGIEQ-FDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLM------------------- 625 (1172)
T ss_pred chhhhhHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHccChHHHHHHHHHhhccccc-------------------
Confidence 78899999999999999988866543 44444444321 122334444444332110
Q ss_pred HHHHHHhHHHHH--HHHHHHHHhhccCCHHHHHHHHHHhccccccc--ccccccccccHHHHHHHHhhC---CCChhHHH
Q 002789 182 DAMRQQCVEQIV--RAWYDIVSMYRSSDFEVCTGVLDCMRRYISWI--DINLIANDAFIPLLFELILAD---GLPEQFRG 254 (881)
Q Consensus 182 ~~~~~~~~~~i~--~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi--~~~~~~~~~~l~~l~~~L~~~---~~~~~~~~ 254 (881)
..+ ....+ +.+.-++.++.+.+.++.+.+|++++....-. +..++- .+.++-+|...... .+.. ...
T Consensus 626 ---d~e-ya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r-~dilp~ff~~fw~rrmA~drr-~yk 699 (1172)
T KOG0213|consen 626 ---DAE-YASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR-FDILPEFFFSFWGRRMALDRR-NYK 699 (1172)
T ss_pred ---cHH-HHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh-hhhhHHHHhhhhhhhhhcccc-chh
Confidence 000 00000 11222334445667788888888888766432 222222 34555555433310 0000 111
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHhhhhhhccccCCCccHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 002789 255 AAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNE 334 (881)
Q Consensus 255 ~a~~~l~~ii~~~~~~~~k~~ll~~l~l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (881)
..++.-++|..| +.... . +..++..+. ++.+.|.+..+..+..+... +...+.+. .+-+.
T Consensus 700 qlv~ttv~ia~K-vG~~~---~-----v~R~v~~lk-de~e~yrkm~~etv~ri~~~-------lg~~dide---rleE~ 759 (1172)
T KOG0213|consen 700 QLVDTTVEIAAK-VGSDP---I-----VSRVVLDLK-DEPEQYRKMVAETVSRIVGR-------LGAADIDE---RLEER 759 (1172)
T ss_pred hHHHHHHHHHHH-hCchH---H-----HHHHhhhhc-cccHHHHHHHHHHHHHHHhc-------cccccccH---HHHHH
Confidence 222333334333 11110 0 112222122 23334554444443333211 11111111 12345
Q ss_pred HHHHHHhhhccCCcchh--hhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhccCcccccccccCCCCChHHHH
Q 002789 335 VLPSVFYVMQNCEVDTT--FSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEED 412 (881)
Q Consensus 335 ~l~~ll~~~~~~~~~v~--~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~ 412 (881)
++..++.-+++.+.+++ ..+|+.+. .. +....++++++++..++.++.-++.
T Consensus 760 lidgil~Afqeqtt~d~vml~gfg~V~---~~------lg~r~kpylpqi~stiL~rLnnksa----------------- 813 (1172)
T KOG0213|consen 760 LIDGILYAFQEQTTEDSVMLLGFGTVV---NA------LGGRVKPYLPQICSTILWRLNNKSA----------------- 813 (1172)
T ss_pred HHHHHHHHHHhcccchhhhhhhHHHHH---HH------HhhccccchHHHHHHHHHHhcCCCh-----------------
Confidence 67777777776654443 11222211 11 1112357899999999988875432
Q ss_pred HHHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHH
Q 002789 413 RMVEYRKDLLVLLRSVGRV----APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 488 (881)
Q Consensus 413 ~f~~~R~~~~~~l~~i~~~----~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~l 488 (881)
..|....+++..++.+ ..+..+.++...+-+.+.. ..-..+-..|-++.+|-..+.-... ...+..+
T Consensus 814 ---~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge---eypEvLgsILgAikaI~nvigm~km---~pPi~dl 884 (1172)
T KOG0213|consen 814 ---KVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE---EYPEVLGSILGAIKAIVNVIGMTKM---TPPIKDL 884 (1172)
T ss_pred ---hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc---ccHHHHHHHHHHHHHHHHhcccccc---CCChhhh
Confidence 1566666777666644 3344556666666666643 3333444445555555554432221 2233333
Q ss_pred HHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHH-----HHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhh
Q 002789 489 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPV-----VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 563 (881)
Q Consensus 489 l~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~-----vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~ 563 (881)
+..|.. +....|..|+-..+.++|+.+. ..|+|+++ +.+.+++. +-.-++.+|+.|..+|--|++..+
T Consensus 885 lPrltP--ILknrheKVqen~IdLvg~Iad---rgpE~v~aREWMRIcfeLlel--LkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 885 LPRLTP--ILKNRHEKVQENCIDLVGTIAD---RGPEYVSAREWMRICFELLEL--LKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred cccchH--hhhhhHHHHHHHHHHHHHHHHh---cCcccCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHhcC
Confidence 333332 3356788888888888888663 34555433 34444321 222356799999999999998877
Q ss_pred h
Q 002789 564 A 564 (881)
Q Consensus 564 ~ 564 (881)
+
T Consensus 958 P 958 (1172)
T KOG0213|consen 958 P 958 (1172)
T ss_pred H
Confidence 6
No 76
>PRK09687 putative lyase; Provisional
Probab=83.32 E-value=58 Score=34.37 Aligned_cols=180 Identities=11% Similarity=0.008 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHHHhcC----cchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 002789 18 IDSMLKSQAVNFCQQIKET----PSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~----~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~ 93 (881)
.|+..|..|-..|-+++.. +.+......++.+.+++.||..|+..|-+. ...-....+. ..+.+...+..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~-~~~~~~~~~~----a~~~l~~~~~D- 139 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHR-CKKNPLYSPK----IVEQSQITAFD- 139 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc-cccccccchH----HHHHHHHHhhC-
Confidence 4899999999999999864 357777777767777899999999999764 2110000111 11222222221
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHhhhcCCCCChh
Q 002789 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSM-VIDMFCRVLNSLDDELISLDYPRTAD 172 (881)
Q Consensus 94 ~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~-~~~~~L~iL~~l~eEv~~~~~~~~~~ 172 (881)
+ ...||...+.+++.+ .=+..++.|+..++.... .......-|..+.
T Consensus 140 ----------~--~~~VR~~a~~aLg~~-------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~------------- 187 (280)
T PRK09687 140 ----------K--STNVRFAVAFALSVI-------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNK------------- 187 (280)
T ss_pred ----------C--CHHHHHHHHHHHhcc-------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------------
Confidence 1 457888877777533 126778888888865432 2222333332220
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhH
Q 002789 173 ELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQF 252 (881)
Q Consensus 173 ~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~ 252 (881)
. +-+.+...+...|. ..+.++...+...|+.. -++..++.+.+.|. ++.+
T Consensus 188 -------------~-~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~---------~~~~av~~Li~~L~----~~~~ 237 (280)
T PRK09687 188 -------------Y-DNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR---------KDKRVLSVLIKELK----KGTV 237 (280)
T ss_pred -------------C-CCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc---------CChhHHHHHHHHHc----CCch
Confidence 0 12334444444554 35777888888887652 33578899999998 5568
Q ss_pred HHHHHHHHHHHHh
Q 002789 253 RGAAVGCVLAVVS 265 (881)
Q Consensus 253 ~~~a~~~l~~ii~ 265 (881)
+..|++++.++-+
T Consensus 238 ~~~a~~ALg~ig~ 250 (280)
T PRK09687 238 GDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHHHhcCC
Confidence 8888888877643
No 77
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=82.61 E-value=22 Score=39.24 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=95.1
Q ss_pred HHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCccccc
Q 002789 514 TRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKE 593 (881)
Q Consensus 514 gry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~ 593 (881)
|.++=|=++..+.|..+++ .++ +..++..+..|...+..+|+.-+..+.-+.+.-+.++-+.-...
T Consensus 318 ~sfsvWeq~f~~iL~~l~E-vL~----d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds--------- 383 (516)
T KOG2956|consen 318 GSFSVWEQHFAEILLLLLE-VLS----DSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDS--------- 383 (516)
T ss_pred cchhHHHHHHHHHHHHHHH-HHc----cchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCC---------
Confidence 3344454333344444443 331 22455677888888888888877777766666666553322211
Q ss_pred CCCccc-hhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhccc
Q 002789 594 LSGSED-GSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGF 672 (881)
Q Consensus 594 ~~~~~~-~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f 672 (881)
.+. ...--|++.++++.. .+......+. |++.. .| +....+-+.+....+.++.+
T Consensus 384 ---~~~v~~~Aeed~~~~las~--~P~~~I~~i~----~~Ilt-----------~D--~~~~~~~iKm~Tkl~e~l~~-- 439 (516)
T KOG2956|consen 384 ---QDEVMRVAEEDCLTTLASH--LPLQCIVNIS----PLILT-----------AD--EPRAVAVIKMLTKLFERLSA-- 439 (516)
T ss_pred ---chhHHHHHHHHHHHHHHhh--CchhHHHHHh----hHHhc-----------Cc--chHHHHHHHHHHHHHhhcCH--
Confidence 111 222344555555443 2333332222 21111 12 12222224455555544422
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhC-ccccccHHHH
Q 002789 673 NERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKA 734 (881)
Q Consensus 673 ~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg-~~~~p~lp~~ 734 (881)
.....+..++++.+.++.+ +.+..||..+-+|+-.|+..+| +.+.|||.++
T Consensus 440 ---------EeL~~ll~diaP~~iqay~--S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 440 ---------EELLNLLPDIAPCVIQAYD--STSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred ---------HHHHHhhhhhhhHHHHHhc--CchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 1235566777777777665 3456899999999999999999 8899999875
No 78
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=82.13 E-value=8.5 Score=32.07 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=48.8
Q ss_pred CCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHH
Q 002789 453 DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLA 532 (881)
Q Consensus 453 ~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~ 532 (881)
+.+|..+..++.+++ +.- . ...++.++..+ .+++|.|+....+.+|++. .++.++.+..
T Consensus 11 ~~~~~vr~~a~~~L~---~~~-~------~~~~~~L~~~l------~d~~~~vr~~a~~aL~~i~-----~~~~~~~L~~ 69 (88)
T PF13646_consen 11 DPDPQVRAEAARALG---ELG-D------PEAIPALIELL------KDEDPMVRRAAARALGRIG-----DPEAIPALIK 69 (88)
T ss_dssp SSSHHHHHHHHHHHH---CCT-H------HHHHHHHHHHH------TSSSHHHHHHHHHHHHCCH-----HHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HcC-C------HhHHHHHHHHH------cCCCHHHHHHHHHHHHHhC-----CHHHHHHHHH
Confidence 367887776665554 321 1 23455555543 4688999999989999985 3555555554
Q ss_pred HhhcccCCCCCCchhhhHHHHHH
Q 002789 533 AFLDERGIHHPNVHVSRRASYLF 555 (881)
Q Consensus 533 ~~l~~~gl~~~~~~v~~~A~~~f 555 (881)
.+ ..+++..||..|+.++
T Consensus 70 ~l-----~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LL-----QDDDDEVVREAAAEAL 87 (88)
T ss_dssp HH-----TC-SSHHHHHHHHHHH
T ss_pred HH-----cCCCcHHHHHHHHhhc
Confidence 43 3445667788888776
No 79
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.78 E-value=76 Score=33.06 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHHHHHhhcc-hHHHhhhhHHHH
Q 002789 731 LPKALEQLLAESEPKEMAGFLVLLNQLICKFNTL-VHDILDEVFPAI 776 (881)
Q Consensus 731 lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~~~~-~~~~l~~ll~~l 776 (881)
+|-+++.+-++....- .+.|..+...+.+||.. +.+....+...+
T Consensus 210 ~p~LleKL~s~~~~~K-~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 210 FPLLLEKLDSTSPSVK-LDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHcCCCcHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3555666555543322 68999999999999965 445555444433
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.31 E-value=1.3e+02 Score=35.52 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=23.9
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhhcc
Q 002789 422 LVLLRSVGRVAPEVTQVFIRNSLANAVTF 450 (881)
Q Consensus 422 ~~~l~~i~~~~~~~~l~~i~~~l~~~l~~ 450 (881)
+.+++.++.+...+.++-+.+.+.+.+..
T Consensus 117 G~TLRFLckLkE~ELlepl~p~IracleH 145 (948)
T KOG1058|consen 117 GSTLRFLCKLKEPELLEPLMPSIRACLEH 145 (948)
T ss_pred chhhhhhhhcCcHHHhhhhHHHHHHHHhC
Confidence 57899999998777788888888888864
No 81
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.19 E-value=19 Score=31.61 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhhH-HHHHHHHHHHHHHhhcc-hHHHhhhhHH
Q 002789 709 RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM-AGFLVLLNQLICKFNTL-VHDILDEVFP 774 (881)
Q Consensus 709 r~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~~-~~~L~l~~~li~~~~~~-~~~~l~~ll~ 774 (881)
+......+..|+...|..+..++|+++..+....+.+++ ...+..-..+|.....+ +.+++++++.
T Consensus 32 k~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~ 99 (107)
T smart00802 32 KKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445677788888888999999999999999988887765 46678888888888753 3444444443
No 82
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=79.83 E-value=1.1e+02 Score=34.38 Aligned_cols=202 Identities=15% Similarity=0.208 Sum_probs=110.3
Q ss_pred CChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhh
Q 002789 501 SNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDT 580 (881)
Q Consensus 501 ~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~ 580 (881)
+++..+..++..++-...=+. ..+.+..++..+.... -....+..+.++...+.-++|..--.-.|....+++.+-.+
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~-~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~l 279 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWP-DDDDLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLEL 279 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 336666666555544332111 2336777777765322 12234455677777777777765444446566666665555
Q ss_pred hhcccccCcccccCCCccchhHHHHHHHHHhccCC-C-----Ccc----chHHHHHHhhHHHHHHHHHHHHhhhhcCCch
Q 002789 581 IARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED-V-----PPE----KQSDYLSSLLTPLCQQVQTMLLDAKMLNPEE 650 (881)
Q Consensus 581 l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~-~-----~~~----~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e 650 (881)
+.. .+-....-++++.+++-.+ . ... -|.+++..+++++++.+++.-+ +
T Consensus 280 L~~-------------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--------~ 338 (415)
T PF12460_consen 280 LSS-------------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--------E 338 (415)
T ss_pred hCC-------------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--------h
Confidence 542 1223445666666665411 0 011 2456666666666555544311 1
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCcccccc
Q 002789 651 STAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPY 730 (881)
Q Consensus 651 ~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~ 730 (881)
.+ ...+.+++.+-+..+.. .+.+=..+++++++++++. .+..++.++-..+..++..-.+.+.++
T Consensus 339 -~k-----~~yL~ALs~ll~~vP~~-------vl~~~l~~LlPLLlqsL~~--~~~~v~~s~L~tL~~~l~~~~~~i~~h 403 (415)
T PF12460_consen 339 -IK-----SNYLTALSHLLKNVPKS-------VLLPELPTLLPLLLQSLSL--PDADVLLSSLETLKMILEEAPELISEH 403 (415)
T ss_pred -hH-----HHHHHHHHHHHhhCCHH-------HHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 11 11222444444433221 2345567788888888853 344577778888877776566667788
Q ss_pred HHHHHHHHHc
Q 002789 731 LPKALEQLLA 740 (881)
Q Consensus 731 lp~~~~~ll~ 740 (881)
+..+++.+++
T Consensus 404 l~sLI~~LL~ 413 (415)
T PF12460_consen 404 LSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHh
Confidence 8888877764
No 83
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=79.73 E-value=1.1e+02 Score=34.35 Aligned_cols=317 Identities=17% Similarity=0.223 Sum_probs=152.4
Q ss_pred HHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchh-hhc---c--chHHHHHHHHHHhCCCCCC-CChhHHHHHH
Q 002789 438 VFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRT---G--AGHLSELVPMLLQTKLPCH-SNRLVALVYL 510 (881)
Q Consensus 438 ~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~-~~~---~--~~~l~~ll~~l~~~~~~~~-~~p~v~~~~~ 510 (881)
..+...+....++ ..+-....+.+..++.+-+...... ..+ . ...++.++........... .++.+ +
T Consensus 41 ~~ll~kl~~~~~~--~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~----L 114 (415)
T PF12460_consen 41 IRLLNKLSIVCQS--ESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRV----L 114 (415)
T ss_pred HHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHH----H
Confidence 3444445544432 1244555666666666655443332 101 1 1144555555554211111 12333 2
Q ss_pred HHHHHhHHHHhh------cCCChHHHHHHhhc---ccCCCCCCc---hhhhHHHHHHHHHHHHhhhcc-hhhHHHHHHHh
Q 002789 511 ETVTRYMKFIQE------HTQYIPVVLAAFLD---ERGIHHPNV---HVSRRASYLFMRVVKLLKAKL-VPFIENILQSL 577 (881)
Q Consensus 511 ~~igry~~~l~~------~~~~L~~vL~~~l~---~~gl~~~~~---~v~~~A~~~f~~~~~~~~~~l-~p~~~~il~~l 577 (881)
+.+|+-..++.. |.+.+..+...|+. ......... ..+.+....+..+....++.. .|..+++++.+
T Consensus 115 ~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l 194 (415)
T PF12460_consen 115 ELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSL 194 (415)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHH
Confidence 333444433332 44556666666651 111221111 245666777888887777765 46777777777
Q ss_pred hhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHH-------------HHH---HH
Q 002789 578 QDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQV-------------QTM---LL 641 (881)
Q Consensus 578 ~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l-------------~~~---~~ 641 (881)
-....... ....+...-+.++.++...+ +.+ .++.++......+ +-. .+
T Consensus 195 ~~~~~~~~----------~~~~~~~~~~~la~LvNK~~-~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K 259 (415)
T PF12460_consen 195 LNLALSSE----------DEFSRLAALQLLASLVNKWP-DDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITK 259 (415)
T ss_pred HHHHHcCC----------ChHHHHHHHHHHHHHHcCCC-Chh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH
Confidence 66544332 23455667778888877633 222 2333333333222 100 00
Q ss_pred hhhhcCCchhhhHHHHHHHHH---HHHHHhhcccCCCCCC-------CCcccH-----HHHHHHHHHHHHHHhhcCCCCh
Q 002789 642 DAKMLNPEESTAKFANIQQII---MAINALSKGFNERLVT-------SSRPAI-----GLMFKQTLDVLLQILVVFPKVE 706 (881)
Q Consensus 642 ~~~~~~~~e~~~~~~~~~~~~---~~~~~l~k~f~~~~~~-------~~~~~~-----~~if~~~~~~~~~~l~~~~~~~ 706 (881)
......++........+...+ ..-...+++|.--... .....+ +.+|..+++.+.+..... ++
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~ 337 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DD 337 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--Ch
Confidence 000011111111111111111 1123444555421111 112223 345666666666555432 22
Q ss_pred hHhhHHHHHHHHHHHhhCcc-ccccHHHHHHHHHccCChhh---HHHHHHHHHHHHHHhhcchHHHhhhhHHHHH
Q 002789 707 PLRCKVTSFIHRMVDTLGAS-VFPYLPKALEQLLAESEPKE---MAGFLVLLNQLICKFNTLVHDILDEVFPAIA 777 (881)
Q Consensus 707 ~ir~~~~~~~~~~v~~lg~~-~~p~lp~~~~~ll~~~~~~~---~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~ 777 (881)
..+.....++..++...... +.+.+|.+++.+++..+.++ ....|..+..++..-.+-+.+.++.+.+.++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 36666777888887765554 55999999999998875443 2455666666666654445555665555544
No 84
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.64 E-value=1.5e+02 Score=35.17 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhcChhhHHH-HHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhC
Q 002789 417 YRKDLLVLLRSVGRVAPEVTQV-FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (881)
Q Consensus 417 ~R~~~~~~l~~i~~~~~~~~l~-~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~ 495 (881)
.|+........+..++++.+-+ -+.+.+...+.. .+...+=.|+.++..+.|.=++.. ....-.+++..++..
T Consensus 137 vRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D---~~p~VVAnAlaaL~eI~e~~~~~~---~~~l~~~~~~~lL~a 210 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSD---SNPMVVANALAALSEIHESHPSVN---LLELNPQLINKLLEA 210 (734)
T ss_pred HHHHHHHHHHHhhcCChhhccccchhHHHHHHhcC---CCchHHHHHHHHHHHHHHhCCCCC---cccccHHHHHHHHHH
Confidence 5677777777777777765422 233334444432 344455556666666666443211 111222333333321
Q ss_pred CCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHH
Q 002789 496 KLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQ 575 (881)
Q Consensus 496 ~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~ 575 (881)
. . ...-..-+.++.-.++|....+.=+..++.... ..+.+.++.|.-.|...+.++.+.... +...++.
T Consensus 211 -l-~---ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~--p~Lqh~n~avvlsavKv~l~~~~~~~~----~~~~~~~ 279 (734)
T KOG1061|consen 211 -L-N---ECTEWGQIFILDCLAEYVPKDSREAEDICERLT--PRLQHANSAVVLSAVKVILQLVKYLKQ----VNELLFK 279 (734)
T ss_pred -H-H---HhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhh--hhhccCCcceEeehHHHHHHHHHHHHH----HHHHHHH
Confidence 0 0 001111122334444444443322333443332 335677788888888888888876665 3344455
Q ss_pred Hhh
Q 002789 576 SLQ 578 (881)
Q Consensus 576 ~l~ 578 (881)
++.
T Consensus 280 K~~ 282 (734)
T KOG1061|consen 280 KVA 282 (734)
T ss_pred Hhc
Confidence 544
No 85
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.14 E-value=70 Score=30.65 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhh-hccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHH
Q 002789 435 VTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM-RTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETV 513 (881)
Q Consensus 435 ~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~-~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~i 513 (881)
..++.....+.+.+.+ .+...+-+++.++.++.+.++.+.. ......+..+++.| + +.+.+.+....+.++
T Consensus 21 ~~l~~l~~ri~~LL~s---~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L-~----~~~~~~~~~~ai~~L 92 (165)
T PF08167_consen 21 SALHKLVTRINSLLQS---KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSIL-E----KPDPPSVLEAAIITL 92 (165)
T ss_pred HHHHHHHHHHHHHhCC---CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-c----CCCCHHHHHHHHHHH
Confidence 3445555556666654 4455666788888888887754431 11223333444332 2 223344455566677
Q ss_pred HHhHHHHhhcCCC--------hHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhh
Q 002789 514 TRYMKFIQEHTQY--------IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD 579 (881)
Q Consensus 514 gry~~~l~~~~~~--------L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~ 579 (881)
++...+....|++ ++.++..++. +.++ ..+...|..++..+.+....-+-||...|-..+.+
T Consensus 93 ~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~---l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 93 TRLFDLIRGKPTLTREIATPNLPKFIQSLLQ---LLQD-SSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred HHHHHHhcCCCchHHHHhhccHHHHHHHHHH---HHhc-cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 7777766665544 3444444432 2221 34566777777777777766666766665555443
No 86
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=76.26 E-value=31 Score=38.99 Aligned_cols=128 Identities=14% Similarity=0.208 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcChh---hHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHH
Q 002789 417 YRKDLLVLLRSVGRVAPE---VTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLL 493 (881)
Q Consensus 417 ~R~~~~~~l~~i~~~~~~---~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~ 493 (881)
|.+.+-+.+..+....|+ ..++.++..++ +.+.-+-++..++.+|+-.|... .+..++.-+.+.++
T Consensus 429 FK~~~Vdaisd~~~~~p~skEraLe~LC~fIE---------Dcey~~I~vrIL~iLG~EgP~a~--~P~~yvrhIyNR~i 497 (898)
T COG5240 429 FKKYMVDAISDAMENDPDSKERALEVLCTFIE---------DCEYHQITVRILGILGREGPRAK--TPGKYVRHIYNRLI 497 (898)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHh---------hcchhHHHHHHHHHhcccCCCCC--CcchHHHHHHHHHH
Confidence 566666666666655553 34444444444 24445667788888888655432 14556666666654
Q ss_pred hCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHH--HHhhh
Q 002789 494 QTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVV--KLLKA 564 (881)
Q Consensus 494 ~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~--~~~~~ 564 (881)
- .+..||..+...+++|+- ..+..+++......+. |.+.+....||+||..++..+- ..|-+
T Consensus 498 L------EN~ivRsaAv~aLskf~l--n~~d~~~~~sv~~~lk-RclnD~DdeVRdrAsf~l~~~~~~da~~p 561 (898)
T COG5240 498 L------ENNIVRSAAVQALSKFAL--NISDVVSPQSVENALK-RCLNDQDDEVRDRASFLLRNMRLSDACEP 561 (898)
T ss_pred H------hhhHHHHHHHHHHHHhcc--CccccccHHHHHHHHH-HHhhcccHHHHHHHHHHHHhhhhhhhhhc
Confidence 2 344567777556555442 2233344444433333 5577788899999999886654 34544
No 87
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=75.90 E-value=13 Score=32.58 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHH
Q 002789 547 VSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS 626 (881)
Q Consensus 547 v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~ 626 (881)
-|.+|..++..+.+-+++++.++.++|...++..+.. ++-+..-+++-..++...+ +++-...++
T Consensus 31 ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~-------------~eL~~~al~~W~~~i~~L~--~~~l~~ll~ 95 (107)
T smart00802 31 EKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI-------------PELRSLALRCWHVLIKTLK--EEELGPLLD 95 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 3888999999999999999999999999999888763 3456677888778887753 344445555
Q ss_pred HhhHHHHHHH
Q 002789 627 SLLTPLCQQV 636 (881)
Q Consensus 627 ~ll~pl~~~l 636 (881)
+++.-+.+.|
T Consensus 96 ~~~~~i~~~~ 105 (107)
T smart00802 96 QIFAAILPLW 105 (107)
T ss_pred HHHHHHHHhc
Confidence 5555554444
No 88
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=74.60 E-value=1.1e+02 Score=34.21 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhhc--cCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCC
Q 002789 376 RLHAGQILEVILTQIR--YDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSAD 453 (881)
Q Consensus 376 ~~~l~~Ll~~l~~km~--~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~ 453 (881)
...+.+|+.+++.|.. ||... .-.+.|+-+.+.+-.++...|..+...=.++++. +.+..+
T Consensus 257 ~sLi~~L~pvlleRs~~Lfp~~~----------------y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef-~g~~~~ 319 (459)
T PF14764_consen 257 GSLICQLLPVLLERSDALFPIPQ----------------YQAEVRRVLSSQLLALFKRHPSLVVELSKEILEF-LGSASN 319 (459)
T ss_pred HHHHHHHHHHHHHHHHHhcCChh----------------HHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHH-hccccc
Confidence 3678899999988874 44321 2235788888888889999998877654444443 322111
Q ss_pred CChhhHHHHHHHHHHhhhcCcch
Q 002789 454 RNVEEVEAALTLLYALGESMSEE 476 (881)
Q Consensus 454 ~~w~~~EaaL~~l~~i~e~~~~~ 476 (881)
. -..-|..++++|+|||.....
T Consensus 320 ~-~~k~~l~~hlvWaIGEy~s~~ 341 (459)
T PF14764_consen 320 I-HSKEELFTHLVWAIGEYLSVS 341 (459)
T ss_pred c-cchhHHHHHHHHHHhcccccc
Confidence 2 335677889999999976544
No 89
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.15 E-value=75 Score=29.46 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=68.8
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhcc---CChhHHHHHHHHHHHHHHHhhccCCCHHH-
Q 002789 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEE- 78 (881)
Q Consensus 3 ~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vrffa~~~L~~~I~~~w~~l~~e~- 78 (881)
.+.+.|.-+-++. ....+-....++++.+..++++-.-+...|.. ..++.+..+|+.+|+..+++.-..+-.+-
T Consensus 5 ~~~~li~kATs~~--~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~ 82 (140)
T PF00790_consen 5 SITELIEKATSES--LPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA 82 (140)
T ss_dssp HHHHHHHHHT-TT--SSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred hHHHHHHHHhCcC--CCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 4677888888764 23336677788999999988777766666652 36799999999999999997543222110
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcCCCCChHH--HHHHHHHHHHHHHHh
Q 002789 79 RNLIRESVFSMVCCELVDGKSSMRVLESPAF--IRNKLAQVLVTLIYF 124 (881)
Q Consensus 79 ~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~--vr~kl~~~l~~l~~~ 124 (881)
...+-+.+...+.... . ... ||+|+-.++..-...
T Consensus 83 ~~~fl~~l~~l~~~~~--------~---~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 83 SKEFLDELVKLIKSKK--------T---DPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp SHHHHHHHHHHHHHTT--------T---HHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC--------C---CchhHHHHHHHHHHHHHHHH
Confidence 1123334444444331 1 333 999988777766554
No 90
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=73.42 E-value=55 Score=36.31 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHhcccccccccccccc--cccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 002789 207 DFEVCTGVLDCMRRYISWIDINLIAN--DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (881)
Q Consensus 207 ~~~l~~~~L~~l~~~i~wi~~~~~~~--~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~ 266 (881)
+.....++++++...++-++.....+ +++.|.+++... .++..+|.+|+=||+.++.+
T Consensus 419 D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~--S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 419 DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYD--STSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhc--CchHHhhhhHHHhHHHHHHH
Confidence 34455578888888888777654433 678888888887 35788999999999998875
No 91
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=72.57 E-value=1.4e+02 Score=31.77 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=51.4
Q ss_pred CCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhh--cchhhHHHHHHHhhhhhhcccccCcccccCCCccchh
Q 002789 524 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA--KLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGS 601 (881)
Q Consensus 524 ~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~--~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~ 601 (881)
|.....+|+.+. .|++++++ +|....+.+..+|.+|+- .+.|-++.+=+.+.. - ..+.+++.
T Consensus 102 ~~l~L~vLsnLf--n~~d~~~~-aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lke----w---------~~~vedqr 165 (378)
T KOG2753|consen 102 ASLRLQVLSNLF--NGVDKPTP-ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKE----W---------NISVEDQR 165 (378)
T ss_pred cccHHHHHHHHH--hccCCCch-HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHh----C---------CCCHHHHH
Confidence 334445566666 78888887 899999999999999984 455655554444432 1 12577888
Q ss_pred HHHHHHHHHhcc
Q 002789 602 HIFEAIGLLIGM 613 (881)
Q Consensus 602 ~l~Eaig~li~~ 613 (881)
.++-++...+..
T Consensus 166 el~r~v~~al~~ 177 (378)
T KOG2753|consen 166 ELLRAVHKALKD 177 (378)
T ss_pred HHHHHHHHHHHh
Confidence 999898877754
No 92
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=72.45 E-value=18 Score=35.05 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHhhcccCCCCCCchhhhHHHHHHHHHHHH-hhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHH
Q 002789 529 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-LKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAI 607 (881)
Q Consensus 529 ~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~-~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eai 607 (881)
+.|..|+ -|+.+...--+--|-..+..+.+. ....+.|.+++++.-+...+... ..+-.....+++
T Consensus 38 ~~Lpif~--dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-----------~~~V~~~~L~~L 104 (183)
T PF10274_consen 38 HYLPIFF--DGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-----------DPEVFCATLKAL 104 (183)
T ss_pred hHHHHHH--hhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHH
Confidence 3355555 466665554556666777777777 77889999999999999888754 233344455566
Q ss_pred HHHhccCCCCccchHHHHHHhhHH
Q 002789 608 GLLIGMEDVPPEKQSDYLSSLLTP 631 (881)
Q Consensus 608 g~li~~~~~~~~~~~~~l~~ll~p 631 (881)
..++.+.+.-.+.-..|+.+++++
T Consensus 105 q~Lv~~~~~vG~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 105 QQLVTSSDMVGEALVPYYRQLLPV 128 (183)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHH
Confidence 555443221123344555555544
No 93
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.32 E-value=10 Score=42.82 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=58.2
Q ss_pred HHHHHhhhcCcchhhhc----cchHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHhHHHHhhcCCC--hHHHHHHhhc
Q 002789 464 TLLYALGESMSEEAMRT----GAGHLSELVPMLLQTKLPCHSNR-LVALVYLETVTRYMKFIQEHTQY--IPVVLAAFLD 536 (881)
Q Consensus 464 ~~l~~i~e~~~~~~~~~----~~~~l~~ll~~l~~~~~~~~~~p-~v~~~~~~~igry~~~l~~~~~~--L~~vL~~~l~ 536 (881)
-++|++|....+..... ....+..++..+ ..+++ .......|+++.+++--...|.+ +.++|+.+.
T Consensus 171 QavWALgNIagds~~~Rd~vl~~g~l~pLl~~l------~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~- 243 (514)
T KOG0166|consen 171 QAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL------NKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALL- 243 (514)
T ss_pred HHHHHHhccccCChHHHHHHHhhcchHHHHHHh------ccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH-
Confidence 46788888766543211 122333444433 23333 22334556888888776566654 666677665
Q ss_pred ccCCCCCCchhhhHHHHHHHHHHHHhhh
Q 002789 537 ERGIHHPNVHVSRRASYLFMRVVKLLKA 564 (881)
Q Consensus 537 ~~gl~~~~~~v~~~A~~~f~~~~~~~~~ 564 (881)
+.+++.++.|..-||.++..++..-..
T Consensus 244 -~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 244 -RLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred -HHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 568889999999999999999965443
No 94
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.61 E-value=1e+02 Score=35.25 Aligned_cols=59 Identities=7% Similarity=0.126 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHHHHHHHhh
Q 002789 804 QELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHL 869 (881)
Q Consensus 804 ~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~ 869 (881)
...-..+|.|+.++++.++..+ . ...+..++..++.-+..-+++..-+.|+ .+|.-+++
T Consensus 148 ~~~l~~ll~~l~nviKfn~~~l--~---e~~i~~lv~~i~~iC~~Ts~~~di~~~L--~vldaii~ 206 (464)
T PF11864_consen 148 ESNLSDLLQFLVNVIKFNFNYL--D---EDEISSLVDQICTICKSTSSEDDIEACL--SVLDAIIT 206 (464)
T ss_pred hhhHHHHHHHHHHHHhcCCCCC--C---HHHHHHHHHHHHHHHhccCcHHHHHHHH--HHHHHHHH
Confidence 3466789999999999996654 1 2256778888776555556666668887 56665544
No 95
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=69.50 E-value=17 Score=31.92 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=56.9
Q ss_pred chhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHH
Q 002789 545 VHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDY 624 (881)
Q Consensus 545 ~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~ 624 (881)
..-+.+|-.++..+.+.+++++.++.++|+..++..+... +-+...+++-..++... ++++-..+
T Consensus 29 ~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~-------------~l~~~al~~W~~fi~~L--~~~~l~~l 93 (107)
T PF08064_consen 29 IPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP-------------ELREEALSCWNCFIKTL--DEEDLGPL 93 (107)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh-------------hhHHHHHHHHHHHHHHC--CHHHHHHH
Confidence 3568889999999999999999999999999998887642 34555677777778775 34455555
Q ss_pred HHHhhHHHHHHH
Q 002789 625 LSSLLTPLCQQV 636 (881)
Q Consensus 625 l~~ll~pl~~~l 636 (881)
++++...+++.|
T Consensus 94 l~~~~~~l~~~~ 105 (107)
T PF08064_consen 94 LDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHhc
Confidence 666555555544
No 96
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=69.02 E-value=1.1e+02 Score=36.75 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=72.7
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCC
Q 002789 422 LVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHS 501 (881)
Q Consensus 422 ~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~ 501 (881)
.-=+...+...|+.++-.+..... -++ ..+-.-+-.|++.+..+.+ ...++.++..+.. ...++
T Consensus 76 ylYl~~yak~~P~~~lLavNti~k-Dl~---d~N~~iR~~AlR~ls~l~~----------~el~~~~~~~ik~--~l~d~ 139 (757)
T COG5096 76 YLYLERYAKLKPELALLAVNTIQK-DLQ---DPNEEIRGFALRTLSLLRV----------KELLGNIIDPIKK--LLTDP 139 (757)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHh-hcc---CCCHHHHHHHHHHHHhcCh----------HHHHHHHHHHHHH--HccCC
Confidence 333455566677766655444322 232 2344445555555544433 2334445554443 34789
Q ss_pred ChhHHHHHHHHHHHhHHHHhhcCCChH-----HHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 002789 502 NRLVALVYLETVTRYMKFIQEHTQYIP-----VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQS 576 (881)
Q Consensus 502 ~p~v~~~~~~~igry~~~l~~~~~~L~-----~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~ 576 (881)
|+.||.++...++.+.+ ..+++.+ -++..+ +.+++|.|.+.|..++..+... ...+|...+...
T Consensus 140 ~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l-----~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~ 208 (757)
T COG5096 140 HAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKEL-----VADSDPIVIANALASLAEIDPE---LAHGYSLEVILR 208 (757)
T ss_pred cHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHH-----hhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHH
Confidence 99998777666666553 3333332 334333 6789999999999999888877 223444444444
Q ss_pred h
Q 002789 577 L 577 (881)
Q Consensus 577 l 577 (881)
+
T Consensus 209 i 209 (757)
T COG5096 209 I 209 (757)
T ss_pred h
Confidence 3
No 97
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=68.84 E-value=3.5e+02 Score=35.01 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-
Q 002789 742 SEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATH- 820 (881)
Q Consensus 742 ~~~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~- 820 (881)
.....+.+...+++.++.++.++. ..+..++..++ +..+.++... . .+ -+....|-++|+.|.+ +-+.++
T Consensus 1133 ~g~a~V~~~vsCl~sl~~k~~~~~-~~v~~cf~~~~-k~le~~k~s~---~--en-~~~~~~p~l~Rsiftl-G~l~Ryf 1203 (1692)
T KOG1020|consen 1133 MGMATVVEAVSCLGSLATKRTDGA-KVVKACFSCYL-KLLEVIKSSN---N--EN-ADIVNFPKLQRSIFTL-GLLSRYF 1203 (1692)
T ss_pred cchHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHH-HHHHHHHhcc---c--cc-cchhhhHHHHHHHHHH-HHHHHhc
Confidence 345667788889999999877664 34444444444 2233443332 1 01 1223468888888754 345553
Q ss_pred CCccccccCCCc------CChHHHHHHHHHhhcCCCCccc-hhHhhHHHHHHHHhhh
Q 002789 821 DLSSVFLSPKSR------GYLDPIMQLLLYTSCNHKDYLV-RKVCYFLGFFSTLHLG 870 (881)
Q Consensus 821 ~~~~~l~s~~~~------~~l~~~l~~~~~~~~~~~d~~~-~k~~~~~~~~~~~~~~ 870 (881)
+|. ....+.+. ...+.++.++..+.. +.|-.+ +|+-..+||+-..+.+
T Consensus 1204 df~-~~~~~g~~~~~~~~~~~e~v~~lL~~f~k-~~~~~lR~~al~~Lg~~ci~hp~ 1258 (1692)
T KOG1020|consen 1204 DFP-KPSNDGKTFLQEGETLKEKVLILLMYFSK-DKDGELRRKALINLGFICIQHPS 1258 (1692)
T ss_pred cCC-CccCCCccchhhhhhHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhCch
Confidence 322 22222111 123556666664444 445444 4444445555444443
No 98
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=68.27 E-value=4.4e+02 Score=35.96 Aligned_cols=226 Identities=14% Similarity=0.109 Sum_probs=124.6
Q ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCc-c----------hHHHHHHHhccCChhHHHHHHHHHHHHHHHhh
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETP-S----------ICRICIEKLSLCNIVQVQFWCLQTLSEVVRVK 70 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~-~----------~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~ 70 (881)
+++...|+.+-+.+ ++++.|++|-..|..|-+.. + +-.....+|.+ .+..+|--|+.+|.+.=.
T Consensus 13 ~~v~~Lve~L~s~~--ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~-- 87 (2102)
T PLN03200 13 ASVAQCIEQLRAKS--SSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCK-- 87 (2102)
T ss_pred HHHHHHHHHHHccc--CCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhc--
Confidence 35677788888553 46788888888887776633 3 33445556654 457888888877665522
Q ss_pred ccCCCHHHHHHH-HHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhc-CCCC------hhhHHHHHHhhc
Q 002789 71 YTSMSSEERNLI-RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEY-PLIW------SSVFVDFLPQLN 142 (881)
Q Consensus 71 w~~l~~e~~~~l-r~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~-p~~W------p~~i~~l~~~~~ 142 (881)
.++.+..| +...+.-+.....+ + ..-.|...+.++-.+....- ...| +..++-|+.+++
T Consensus 88 ----~e~nk~~Iv~~GaIppLV~LL~s------G---s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~ 154 (2102)
T PLN03200 88 ----EEDLRVKVLLGGCIPPLLSLLKS------G---SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQ 154 (2102)
T ss_pred ----CHHHHHHHHHcCChHHHHHHHHC------C---CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHh
Confidence 12222222 22222222222100 1 34466777777777765421 1223 567788888887
Q ss_pred CCch----hHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 002789 143 KGSM----VIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCM 218 (881)
Q Consensus 143 ~~~~----~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l 218 (881)
.+.. ........|..|+-.- ..+.. ..+....++.+++++ . +.++.+...+..++
T Consensus 155 ~gsk~d~~L~~~Av~AL~nLs~~~-----------en~~~---~IIeaGaVp~LV~LL----s---S~d~~lQ~eAa~aL 213 (2102)
T PLN03200 155 PGNKQDKVVEGLLTGALRNLCGST-----------DGFWS---ATLEAGGVDILVKLL----S---SGNSDAQANAASLL 213 (2102)
T ss_pred CCchhhHHHHHHHHHHHHHHhcCc-----------cchHH---HHHHcCCHHHHHHHH----c---CCCHHHHHHHHHHH
Confidence 6531 1122334444443210 01110 112222355555544 2 34566666666655
Q ss_pred ccccccc--ccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcC
Q 002789 219 RRYISWI--DINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKR 267 (881)
Q Consensus 219 ~~~i~wi--~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~ 267 (881)
.+...-. ....+.+...++.+.++|.+ .+++.+|..|.-+|..|.+.+
T Consensus 214 a~Lass~ee~~~aVIeaGaVP~LV~LL~s-g~~~~VRE~AA~AL~nLAs~s 263 (2102)
T PLN03200 214 ARLMMAFESSISKVLDAGAVKQLLKLLGQ-GNEVSVRAEAAGALEALSSQS 263 (2102)
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHcc-CCChHHHHHHHHHHHHHhcCC
Confidence 4443221 23344567789999999972 235689999999999998753
No 99
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=67.80 E-value=24 Score=34.19 Aligned_cols=87 Identities=17% Similarity=0.298 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHh-hCccccccHHHHHHHHHccCChhh---HHHHHHHHHHH---HHH
Q 002789 688 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT-LGASVFPYLPKALEQLLAESEPKE---MAGFLVLLNQL---ICK 760 (881)
Q Consensus 688 f~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~-lg~~~~p~lp~~~~~ll~~~~~~~---~~~~L~l~~~l---i~~ 760 (881)
|...++++...+.. ...+-+-.++..++.|+.. -++.+.|.+|+++..+-..+++++ ....|..+.++ -..
T Consensus 36 y~~~Lpif~dGL~E--t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 36 YHHYLPIFFDGLRE--TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhhHHHHHHhhhhc--cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 55566666655542 2223344566677777766 677899999999999988776543 24556777777 444
Q ss_pred hhcchHHHhhhhHHHH
Q 002789 761 FNTLVHDILDEVFPAI 776 (881)
Q Consensus 761 ~~~~~~~~l~~ll~~l 776 (881)
.|....|+..++++.+
T Consensus 114 vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVL 129 (183)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5555667777665543
No 100
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=67.78 E-value=13 Score=36.19 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHH
Q 002789 502 NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (881)
Q Consensus 502 ~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~ 561 (881)
||.||...+-++| +....+|..+.+.+..+. ..+.++++.||..|...+.++...
T Consensus 1 ~~~vR~n~i~~l~---DL~~r~~~~ve~~~~~l~--~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALG---DLCIRYPNLVEPYLPNLY--KCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHH---HHHHhCcHHHHhHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHc
Confidence 6788766644444 344455666666665555 447889999999999999987754
No 101
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=66.64 E-value=38 Score=29.73 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhcccccccc--cccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcC
Q 002789 206 SDFEVCTGVLDCMRRYISWID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKR 267 (881)
Q Consensus 206 ~~~~l~~~~L~~l~~~i~wi~--~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~ 267 (881)
.++.+...++.++.....-.+ ...+.+.+.++.+.+++. ++++.++..|+.++..+...+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCc
Confidence 346677777777776554311 122344578999999998 458899999999999998643
No 102
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=65.43 E-value=66 Score=34.31 Aligned_cols=133 Identities=16% Similarity=0.128 Sum_probs=81.7
Q ss_pred HHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhh-cCCChHHHHHHhhcccCCC
Q 002789 463 LTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE-HTQYIPVVLAAFLDERGIH 541 (881)
Q Consensus 463 L~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~-~~~~L~~vL~~~l~~~gl~ 541 (881)
|+.+..+=+.+.... .+...+..++..|+..++ ..+++.||...+.++|-|+=.=+. -.++++-.+..+ .
T Consensus 4 L~i~~~lL~~~~~~~--~~~~~l~~ll~~lI~P~v-~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~------~ 74 (298)
T PF12719_consen 4 LSITQSLLENVSSSL--SPNISLESLLDSLILPAV-QSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL------Q 74 (298)
T ss_pred HHHHHHHHHhccccC--CCcchHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH------H
Confidence 444555555554221 134456677777764444 567789999999999988854332 123444434333 2
Q ss_pred CCCchhhhHHHHHHHHHHHHhhhcchh---------hHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhc
Q 002789 542 HPNVHVSRRASYLFMRVVKLLKAKLVP---------FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIG 612 (881)
Q Consensus 542 ~~~~~v~~~A~~~f~~~~~~~~~~l~p---------~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~ 612 (881)
..++.|+..|..++..+....+..... ....+++.+...+... ..+-+....||++.++-
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-----------~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-----------NPELQAIAVEGLCKLLL 143 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHh
Confidence 346789999999999988877654432 1234555555555533 24567788999998887
Q ss_pred cCC
Q 002789 613 MED 615 (881)
Q Consensus 613 ~~~ 615 (881)
..-
T Consensus 144 ~~~ 146 (298)
T PF12719_consen 144 SGR 146 (298)
T ss_pred cCC
Confidence 643
No 103
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.11 E-value=1.4e+02 Score=31.16 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCC
Q 002789 190 EQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMD 269 (881)
Q Consensus 190 ~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~ 269 (881)
..++.++...|+ ++.+-+...++++++.++.-+|..--...+++..+.++++ .++..+|++.+-++++..-.
T Consensus 187 ~~~l~~Ll~lL~---n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~-----t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 187 FQILTFLLGLLE---NGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQ-----TDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHHHh---CCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhC-----CccHHHHHHHHHHHHhhccc
Confidence 455666777776 4567788999999999999999876677789999999887 24678899999888886544
Q ss_pred h
Q 002789 270 P 270 (881)
Q Consensus 270 ~ 270 (881)
+
T Consensus 259 ~ 259 (262)
T PF14225_consen 259 P 259 (262)
T ss_pred c
Confidence 3
No 104
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=64.41 E-value=90 Score=37.42 Aligned_cols=123 Identities=16% Similarity=0.234 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHHhc-CcchHHHHHHHhcc---CChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 002789 18 IDSMLKSQAVNFCQQIKE-TPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~~---~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~ 93 (881)
-|.+.|+-..-||..+-+ .|+---+|...+.+ +.++.+|-+|++++-. +.. ..|-..++..+.+.
T Consensus 67 rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~--------l~~---~el~~~~~~~ik~~ 135 (757)
T COG5096 67 RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSL--------LRV---KELLGNIIDPIKKL 135 (757)
T ss_pred cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh--------cCh---HHHHHHHHHHHHHH
Confidence 488889999999998877 66555555554443 3569999999998863 222 23445566666655
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhh-HHHHH-Hhhc-CCchhHHHHHHHHHHHHHH
Q 002789 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSV-FVDFL-PQLN-KGSMVIDMFCRVLNSLDDE 161 (881)
Q Consensus 94 ~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~-i~~l~-~~~~-~~~~~~~~~L~iL~~l~eE 161 (881)
.. .+ .++||+..+.+++.++..+ |+-.++. ..++. .++. +++..+.+++..|..+.+|
T Consensus 136 l~-------d~--~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 136 LT-------DP--HAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cc-------CC--cHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 31 12 6799999999999999654 3334443 33333 3343 4567788899999999888
No 105
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=62.58 E-value=43 Score=32.62 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccc---cccHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 002789 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN---DAFIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (881)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~---~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~ 265 (881)
+..+-..+...|+. ..++.+...++||+...++=.|.+-.-. ++++..+..++. +.+++++.+++.|+..+++
T Consensus 99 i~~lH~~Ll~~L~~--E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~--~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 99 IMELHRGLLLALQA--EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLR--HRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHc
Confidence 33344444555553 3466678899999999988777654431 234444445555 4588899999999988887
Q ss_pred c
Q 002789 266 K 266 (881)
Q Consensus 266 ~ 266 (881)
-
T Consensus 175 ~ 175 (182)
T PF13251_consen 175 V 175 (182)
T ss_pred C
Confidence 4
No 106
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=62.12 E-value=1e+02 Score=27.07 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhhH-HHHHHHHHHHHHHhhcc-hHHHhhhhHHHHH
Q 002789 708 LRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM-AGFLVLLNQLICKFNTL-VHDILDEVFPAIA 777 (881)
Q Consensus 708 ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~~-~~~L~l~~~li~~~~~~-~~~~l~~ll~~l~ 777 (881)
-+..+...+.+++...|..+.++.|+++..+....+.+++ ...+..-..+++..+.+ ..+++++++..++
T Consensus 31 ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 31 EKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3445667788888877888889999999999887776655 45678888888888763 4455555544433
No 107
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=61.38 E-value=1.8e+02 Score=28.91 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCC---------CCc---
Q 002789 551 ASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED---------VPP--- 618 (881)
Q Consensus 551 A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~---------~~~--- 618 (881)
....+..+.+.++..-.|++.++++.+.++-... ++..+..+-+++|..|.+.+ ++.
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~-----------~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~ 88 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESE-----------DFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNA 88 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCC-----------CcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCC
Confidence 3334444445555555567777777776654432 23445555556665555433 000
Q ss_pred -------------------cchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCC
Q 002789 619 -------------------EKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTS 679 (881)
Q Consensus 619 -------------------~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~ 679 (881)
.....+...-+-|+...+.+...+.....+....+ + ......-+=++-.+|....
T Consensus 89 ~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak-~--~~~l~~QlWslLP~FC~~P--- 162 (198)
T PF08161_consen 89 DDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAK-I--YETLVQQLWSLLPGFCNYP--- 162 (198)
T ss_pred CcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHH-H--HHHHHHHHHHHhHHhcCCc---
Confidence 12335566666666666666555422211111111 1 2222222334455665542
Q ss_pred CcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHH
Q 002789 680 SRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRM 719 (881)
Q Consensus 680 ~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~ 719 (881)
....+-|.++.+.+...+. +...+|..++.+++++
T Consensus 163 --~D~~~~F~~~a~~L~~~L~---~~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 163 --TDLAESFPSFAKLLGNALY---DQPDLRPIICQALRRL 197 (198)
T ss_pred --ccHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHH
Confidence 1235667766776666654 2356777777777665
No 108
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=61.23 E-value=1.8e+02 Score=30.70 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=45.1
Q ss_pred HHHHHHHHHhH--HHHhhcCCC-hHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcc------hhhHHHHHHHh
Q 002789 507 LVYLETVTRYM--KFIQEHTQY-IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL------VPFIENILQSL 577 (881)
Q Consensus 507 ~~~~~~igry~--~~l~~~~~~-L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l------~p~~~~il~~l 577 (881)
..+.|++.+.. .++..|..+ +|++|. + +++..+.+|.++|.++..|.+.+.... ....+.+.+.+
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~-l-----lDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILN-L-----LDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHH-H-----hcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 34445555222 366667554 556564 3 567788999999999999999987644 23455555555
Q ss_pred hhhhh
Q 002789 578 QDTIA 582 (881)
Q Consensus 578 ~~~l~ 582 (881)
.+++.
T Consensus 172 ~~~L~ 176 (282)
T PF10521_consen 172 FPCLY 176 (282)
T ss_pred HHHhh
Confidence 55554
No 109
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.08 E-value=3e+02 Score=31.51 Aligned_cols=289 Identities=16% Similarity=0.143 Sum_probs=137.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhh-hhhhccccCCCccHHHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q 002789 248 LPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ-ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANE 326 (881)
Q Consensus 248 ~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~-l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (881)
..++.+..+..++..+.++...|.-. ..+.. + +..++.-+..+++.......|-.++.++.--.+..+.+..
T Consensus 78 ~~~~~q~~a~~~~rkllS~~~~ppi~-~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~----- 150 (514)
T KOG0166|consen 78 DDPQQQLTATQAFRKLLSKERNPPID-EVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD----- 150 (514)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCHH-HHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc-----
Confidence 36777889999999999987655321 22222 2 1222222233443444333444444443211111111111
Q ss_pred HHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHH--hccCCCCcHHHHH------HHHHHHHHHHHhhccCccccc
Q 002789 327 ASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVAT--MKSLSPLKEEQRL------HAGQILEVILTQIRYDPMYRN 398 (881)
Q Consensus 327 ~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~--l~~~~~l~~~~~~------~l~~Ll~~l~~km~~p~~~~~ 398 (881)
...+|.+.+++..++.++++.+ .|.. +..+ ++.++. .+..|+..+ .+++
T Consensus 151 ------agavp~fi~Ll~s~~~~v~eQa------vWALgNIagd---s~~~Rd~vl~~g~l~pLl~~l-----~~~~--- 207 (514)
T KOG0166|consen 151 ------AGAVPIFIQLLSSPSADVREQA------VWALGNIAGD---SPDCRDYVLSCGALDPLLRLL-----NKSD--- 207 (514)
T ss_pred ------CCchHHHHHHhcCCcHHHHHHH------HHHHhccccC---ChHHHHHHHhhcchHHHHHHh-----cccc---
Confidence 2457888899999999888655 3532 2211 112222 233333222 1111
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHhc-Chh---hHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCc
Q 002789 399 NLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRV-APE---VTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMS 474 (881)
Q Consensus 399 ~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~-~~~---~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~ 474 (881)
.. .+.+.+.=++..+++- .|. ..+..+.+.+...+.+ .+.|..--++|+++....
T Consensus 208 --------------~~-~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~------~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 208 --------------KL-SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS------TDEEVLTDACWALSYLTD 266 (514)
T ss_pred --------------ch-HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHhc
Confidence 11 1334455556666644 343 3344455555555543 244555567888776443
Q ss_pred chhhhc----cchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHh---HHHHh---hcCCChHHHHHHhhcccCCCCCC
Q 002789 475 EEAMRT----GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRY---MKFIQ---EHTQYIPVVLAAFLDERGIHHPN 544 (881)
Q Consensus 475 ~~~~~~----~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry---~~~l~---~~~~~L~~vL~~~l~~~gl~~~~ 544 (881)
...++. .....+.++..|- .+.+.|+.-.+.++|-. .+... -+...|+.+. .++ ..++.
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~------~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~-~ll----~~s~~ 335 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLG------HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLS-NLL----SSSPK 335 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHc------CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHH-HHh----ccCcc
Confidence 221110 2334455555442 22222222222234431 11111 1334444333 333 23455
Q ss_pred chhhhHHHHHHHHHHHHhhhcch-----hhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhcc
Q 002789 545 VHVSRRASYLFMRVVKLLKAKLV-----PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 613 (881)
Q Consensus 545 ~~v~~~A~~~f~~~~~~~~~~l~-----p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~ 613 (881)
+.++.-||.++.+|+-....++- ..++.++.. +... .++.|...-=||+.+.+.
T Consensus 336 ~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~----l~~~-----------ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 336 ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINL----LQTA-----------EFDIRKEAAWAISNLTSS 394 (514)
T ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHH----Hhcc-----------chHHHHHHHHHHHhhccc
Confidence 56889999999999988776663 233444433 3333 255555555567666554
No 110
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.75 E-value=79 Score=30.28 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=55.8
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHH
Q 002789 43 CIEKLSLCNIVQVQFWCLQTLSEVVRVK-YTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (881)
Q Consensus 43 ~~~lL~~~~~~~vrffa~~~L~~~I~~~-w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l 121 (881)
...+|. +++++.|+.|+.+++..+... |..+-..- ...-+.++..+.+. + +..++.-.+.+++.|
T Consensus 30 i~~LL~-s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~~-----------~-~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 30 INSLLQ-SKSAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEKP-----------D-PPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHhC-CCChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcCC-----------C-CHHHHHHHHHHHHHH
Confidence 334444 467999999999999999986 76664433 33333456655532 2 677778899999999
Q ss_pred HHhhcCCCChhhHHHHH
Q 002789 122 IYFEYPLIWSSVFVDFL 138 (881)
Q Consensus 122 ~~~~~p~~Wp~~i~~l~ 138 (881)
+.+. .+||++..++.
T Consensus 96 ~~~~--~~~p~l~Rei~ 110 (165)
T PF08167_consen 96 FDLI--RGKPTLTREIA 110 (165)
T ss_pred HHHh--cCCCchHHHHh
Confidence 9765 67888866663
No 111
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=59.44 E-value=19 Score=29.96 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHH
Q 002789 18 IDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSE 65 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~ 65 (881)
.++..|..|-..|.++. ++++-.....++. ++++.||..|+..|..
T Consensus 12 ~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 12 PDPQVRAEAARALGELG-DPEAIPALIELLK-DEDPMVRRAAARALGR 57 (88)
T ss_dssp SSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT-SSSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 47888888888887664 4567777777774 4668888888887764
No 112
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=58.58 E-value=4e+02 Score=32.15 Aligned_cols=225 Identities=15% Similarity=0.215 Sum_probs=124.7
Q ss_pred ChhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHH
Q 002789 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERN 80 (881)
Q Consensus 1 m~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~ 80 (881)
|+++..=|+.+|. +...|-++...+-++-+.|+.-....+ + + -.+.+|-+.++.+|.. +-+--.
T Consensus 122 ~~~~d~yiE~lYe-----~~~ek~~~~~~il~La~~~~NL~~l~~---n----e---~l~~aL~RvLred~~k-s~~l~t 185 (708)
T PF05804_consen 122 INDLDEYIELLYE-----DIPEKIRGTSLILQLARNPENLEELVQ---N----E---TLMSALARVLREDWKK-SVELAT 185 (708)
T ss_pred HHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhCCcchHHHHHH---h----H---HHHHHHHHHHHHHhhh-hHHHHH
Confidence 4567777888884 223456666777777777766553332 2 1 2456777888888876 222211
Q ss_pred HHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcC--CCChhhHHHHH--------------------
Q 002789 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYP--LIWSSVFVDFL-------------------- 138 (881)
Q Consensus 81 ~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p--~~Wp~~i~~l~-------------------- 138 (881)
.|- ++|-.+..++ +.+ +-..+.|++.+...++-++-- +.|.+=+...-
T Consensus 186 nI~-~iF~~fS~f~------~fH---~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~ 255 (708)
T PF05804_consen 186 NII-YIFFCFSNFS------QFH---PILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKL 255 (708)
T ss_pred HHH-HHHHHHHhHH------HHH---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHH
Confidence 111 2222333221 113 677889999888888766532 24532111111
Q ss_pred -HhhcCCchhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 002789 139 -PQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDC 217 (881)
Q Consensus 139 -~~~~~~~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~ 217 (881)
.+...........+.+|..++|+.. .+..|+. ..++..+..+|+ +.+.++...++.+
T Consensus 256 ~~l~~kQeqLlrv~~~lLlNLAed~~----------------ve~kM~~---~~iV~~Lv~~Ld---r~n~ellil~v~f 313 (708)
T PF05804_consen 256 QTLIRKQEQLLRVAFYLLLNLAEDPR----------------VELKMVN---KGIVSLLVKCLD---RENEELLILAVTF 313 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChH----------------HHHHHHh---cCCHHHHHHHHc---CCCHHHHHHHHHH
Confidence 1111112223345555666655442 2223332 234555555665 3577888888888
Q ss_pred hccccccc-ccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHH
Q 002789 218 MRRYISWI-DINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQ 278 (881)
Q Consensus 218 l~~~i~wi-~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~ 278 (881)
++...-.- .-+.+....+++.+..++. .+++.+...|+..|..+- .++..+.+++.
T Consensus 314 LkkLSi~~ENK~~m~~~giV~kL~kLl~--s~~~~l~~~aLrlL~NLS---fd~~~R~~mV~ 370 (708)
T PF05804_consen 314 LKKLSIFKENKDEMAESGIVEKLLKLLP--SENEDLVNVALRLLFNLS---FDPELRSQMVS 370 (708)
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhC---cCHHHHHHHHH
Confidence 87654321 1233455689999999998 457788888888776653 45555544443
No 113
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.56 E-value=1.3e+02 Score=27.94 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=66.7
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhc---cCChhHHHHHHHHHHHHHHHhhccCCCHHHHH
Q 002789 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS---LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERN 80 (881)
Q Consensus 4 l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~---~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~ 80 (881)
+++.|.-+-+|. .....-.-..+++..+..+|++-..+...+. ++.++++..+|+.+|+..+++.-..+-.+ .
T Consensus 2 ~~~~iekAT~~~--l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e--v 77 (139)
T cd03567 2 LEAWLNKATNPS--NREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSE--V 77 (139)
T ss_pred HHHHHHHHcCcc--CCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH--H
Confidence 566777777764 3344566678889999888877766666655 24679999999999999999754332111 1
Q ss_pred HHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHH
Q 002789 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLI 122 (881)
Q Consensus 81 ~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~ 122 (881)
.=|.++-+.+.... +... +...+.-|++|+..++-.-.
T Consensus 78 as~~Fl~el~kl~~--~k~~--~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 78 GKFRFLNELIKLVS--PKYL--GSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HhHHHHHHHHHHhc--cccC--CCCCCHHHHHHHHHHHHHHH
Confidence 11333333222210 0000 01116778898776664433
No 114
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.53 E-value=1.3e+02 Score=26.72 Aligned_cols=109 Identities=12% Similarity=0.033 Sum_probs=59.5
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhc---cCChhHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS---LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~---~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
++.|.-+-++. ..........+.+....+.+++...+...+. .++++.+.+.|+.+|+..+++.-...-.+-..
T Consensus 2 ~~~v~~AT~~~--~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~- 78 (115)
T cd00197 2 EKTVEKATSNE--NMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS- 78 (115)
T ss_pred hHHHHHHcCCC--CCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH-
Confidence 34555555542 1112334556666666666665555554443 23579999999999999999854433332222
Q ss_pred HHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHH
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (881)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l 121 (881)
+.++...+...+. + .. +...+..||+|+-+++...
T Consensus 79 -~~~~~~l~~~~~~-~-~~--~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 79 -NDFAVELLKFDKS-K-LL--GDDVSTNVREKAIELVQLW 113 (115)
T ss_pred -hHHHHHHHHhhcc-c-cc--cCCCChHHHHHHHHHHHHH
Confidence 2344444331110 0 00 1111678999988877543
No 115
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=57.86 E-value=3.1e+02 Score=30.70 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHH-HHHHHHHhhhcCcchhhhccchHHHHHHHHHHhC
Q 002789 417 YRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEA-ALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (881)
Q Consensus 417 ~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~Ea-aL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~ 495 (881)
|.+.+..++......+|..+..++..++.. |..+ +...|. -|..+..+-+.++.+. .......++..+-.
T Consensus 234 y~~~L~~~~~~f~~kdp~l~~~~i~~llk~----WP~t-~s~Kev~FL~el~~il~~~~~~~---f~~i~~~lf~~la~- 304 (409)
T PF01603_consen 234 YHQQLSYCVVQFLEKDPSLAEPVIKGLLKH----WPKT-NSQKEVLFLNELEEILEVLPPEE---FQKIMVPLFKRLAK- 304 (409)
T ss_dssp THHHHHHHHHHHHHH-GGGHHHHHHHHHHH----S-SS--HHHHHHHHHHHHHHHTT--HHH---HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHh----CCCC-CchhHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHH-
Confidence 666777788888888898877776665554 4333 334454 3444555555555443 23344445554442
Q ss_pred CCCCCCChhHHHHH--HHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHH
Q 002789 496 KLPCHSNRLVALVY--LETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 560 (881)
Q Consensus 496 ~~~~~~~p~v~~~~--~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~ 560 (881)
....+|..|+-.+ ++.=-.+..++..+.+.+-+++..-+-...-.|=+..||..|+.++.-+.+
T Consensus 305 -ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 305 -CISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp -HHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred -HhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1256788885433 333333345666666554444433332122344467899999888877654
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=57.20 E-value=3.5e+02 Score=31.08 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcC---C--chhHH
Q 002789 75 SSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK---G--SMVID 149 (881)
Q Consensus 75 ~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~---~--~~~~~ 149 (881)
+++.+..+|-+|-+|+.... ..|.-..|..++.+..+- -=+++.+..++.++. + ....-
T Consensus 258 n~q~~~q~rpfL~~wls~k~-------------emV~lE~Ar~v~~~~~~n---v~~~~~~~~vs~L~~fL~s~rv~~rF 321 (898)
T COG5240 258 NSQALLQLRPFLNSWLSDKF-------------EMVFLEAARAVCALSEEN---VGSQFVDQTVSSLRTFLKSTRVVLRF 321 (898)
T ss_pred ChHHHHHHHHHHHHHhcCcc-------------hhhhHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45677888889989987651 234345666676666553 235566665555442 2 22344
Q ss_pred HHHHHHHHHH
Q 002789 150 MFCRVLNSLD 159 (881)
Q Consensus 150 ~~L~iL~~l~ 159 (881)
..+|+|..|+
T Consensus 322 sA~Riln~la 331 (898)
T COG5240 322 SAMRILNQLA 331 (898)
T ss_pred HHHHHHHHHH
Confidence 5677777664
No 117
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=54.62 E-value=2.3e+02 Score=30.29 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=64.9
Q ss_pred HhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhh---HHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHhhc
Q 002789 708 LRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE---MAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNII 784 (881)
Q Consensus 708 ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~---~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l 784 (881)
||-.....+.+-+.-+|....|.++.++-.++...+.+. ....+.++..+....+.+ .+.+..|..+
T Consensus 113 Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~----------~F~~~lwl~i 182 (307)
T PF04118_consen 113 VKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK----------YFWQCLWLCI 182 (307)
T ss_pred hHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh----------HHHHHHHHHH
Confidence 444444445444446788778999988888887775322 234444444444444433 1222333333
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc----------cccccCCCcCChHHHHHHHHHhhcCCCCccc
Q 002789 785 PRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLS----------SVFLSPKSRGYLDPIMQLLLYTSCNHKDYLV 854 (881)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~----------~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~ 854 (881)
- ..|+.|...+.++.+-..+... ..++.+ .-.-++.++. .+.+.++.-+
T Consensus 183 i----------------~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~Llv~al~-~~L~D~~iLV 241 (307)
T PF04118_consen 183 I----------------TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGP----DPGLLVRALC-ACLEDENILV 241 (307)
T ss_pred h----------------cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCC----CccHHHHHHH-HHhCCchHHH
Confidence 2 2457888888888775544320 001111 1123555555 3455567777
Q ss_pred hhHhh
Q 002789 855 RKVCY 859 (881)
Q Consensus 855 ~k~~~ 859 (881)
+|.++
T Consensus 242 qR~~L 246 (307)
T PF04118_consen 242 QRGFL 246 (307)
T ss_pred HHHHH
Confidence 77665
No 118
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.79 E-value=4.9e+02 Score=31.66 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=104.9
Q ss_pred CCChhHHHHHHHHHHHhHHHHhhc--C--CChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHH
Q 002789 500 HSNRLVALVYLETVTRYMKFIQEH--T--QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQ 575 (881)
Q Consensus 500 ~~~p~v~~~~~~~igry~~~l~~~--~--~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~ 575 (881)
++.+.++... +-...+|++.+ . .+...|+..+++ -+.+.++-|=-.|...+..+|+-..+.+.|-+.+...
T Consensus 738 d~qvpik~~g---L~~l~~l~e~r~~~~~~~~ekvl~i~ld--~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 738 DDQVPIKGYG---LQMLRHLIEKRKKATLIQGEKVLAIALD--TLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYL 812 (982)
T ss_pred CCcccchHHH---HHHHHHHHHhcchhhhhhHHHHHHHHHH--HhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3444444433 34456677742 2 234556766664 2566677777888888889998877777664433322
Q ss_pred HhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHH
Q 002789 576 SLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKF 655 (881)
Q Consensus 576 ~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~ 655 (881)
.-. . . ...+.++.+=||++.++.+.+ +-...|...+ ++..-..+ + +++. ...
T Consensus 813 s~k---~-k----------~~~d~~lkVGEai~k~~qa~G---el~~~y~~~L----i~tfl~gv---r---epd~-~~R 864 (982)
T KOG4653|consen 813 SEK---K-K----------LQTDYRLKVGEAILKVAQALG---ELVFKYKAVL----INTFLSGV---R---EPDH-EFR 864 (982)
T ss_pred hcc---c-C----------CCccceehHHHHHHHHHHHhc---cHHHHHHHHH----HHHHHHhc---C---CchH-HHH
Confidence 211 1 1 136788899999999998865 3344444433 33222222 1 1111 111
Q ss_pred HH-HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCccccccHHHH
Q 002789 656 AN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKA 734 (881)
Q Consensus 656 ~~-~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~ 734 (881)
+. +..+...+-..+.+. ...|.++...+..... ..+...+|.+.--.++.+...+|++++|++-..
T Consensus 865 aSS~a~lg~Lcq~~a~~v------------sd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQV------------SDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HhHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 11 222223333332222 3445565555554332 345567787788888888888898888866543
No 119
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.69 E-value=1.9e+02 Score=26.55 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=66.0
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhcc---CChhHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
++.|.-+.+|. .....-....+++..+..++++-..+...|.. +.++.+..+|+.+|+..+++.-..+-. +-
T Consensus 2 ~~~i~kATs~~--l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~---ev 76 (133)
T smart00288 2 ERLIDKATSPS--LLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHL---EV 76 (133)
T ss_pred hhHHHHHcCcC--CCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHH---HH
Confidence 45667777763 33456677789999999888777777666652 467999999999999999985332221 11
Q ss_pred HHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHH
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIY 123 (881)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~ 123 (881)
-....++-+.+... . ... .+-|++|+..++-.-..
T Consensus 77 ~s~~fl~~L~~l~~-----~-~~~-~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 77 ASKEFLNELVKLIK-----P-KYP-LPLVKKRILELIQEWAD 111 (133)
T ss_pred HhHHHHHHHHHHHc-----C-CCC-cHHHHHHHHHHHHHHHH
Confidence 12223344443321 0 111 22388887776654443
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=51.94 E-value=4.4e+02 Score=30.65 Aligned_cols=243 Identities=12% Similarity=0.149 Sum_probs=104.2
Q ss_pred cCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhhhhh
Q 002789 205 SSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISR 284 (881)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~l~~ 284 (881)
..+..++..+++.|-.++.=-+ .+ -+.+.++|.++|+ .+++.-...+-.+|.+++. ++|..- +- .
T Consensus 70 Ded~~iR~~aik~lp~~ck~~~-~~--v~kvaDvL~QlL~--tdd~~E~~~v~~sL~~ll~--~d~k~t--L~------~ 134 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKDNP-EH--VSKVADVLVQLLQ--TDDPVELDAVKNSLMSLLK--QDPKGT--LT------G 134 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T---T---HHHHHHHHHHHTT-----HHHHHHHHHHHHHHHH--H-HHHH--HH------H
T ss_pred cccHHHHHHHHHhHHHHHHhHH-HH--HhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHh--cCcHHH--HH------H
Confidence 4577788888888776653110 00 0345667778887 3456666777778877776 334221 11 1
Q ss_pred hccccC--CCccHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHH
Q 002789 285 VFGLVS--EDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYV 362 (881)
Q Consensus 285 i~~~~~--~~~d~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w 362 (881)
++..+. ...|+..++.+-+++..-...+- .+.+.+ ..+.+. -++..+...+. ||+.+=|..+.+++
T Consensus 135 lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~--~~~~~p---~~E~e~---~i~~~ikkvL~----DVTaeEF~l~m~lL 202 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERALKFLREKLKPLK--PELLTP---QKEMEE---FIVDEIKKVLQ----DVTAEEFELFMSLL 202 (556)
T ss_dssp HHHHHH---HS-HHHHHHHHHHHHHHGGGS---TTTS------HHHHH---HHHHHHHHHCT----T--HHHHHHHHHHH
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHhhCc--HHHhhc---hHHHHH---HHHHHHHHHHH----hccHHHHHHHHHHH
Confidence 222211 12344455554444432211000 001110 012221 22333333443 34444466677777
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHHHHhhccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHH-hcChhhHHHHHH
Q 002789 363 ATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVG-RVAPEVTQVFIR 441 (881)
Q Consensus 363 ~~l~~~~~l~~~~~~~l~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~-~~~~~~~l~~i~ 441 (881)
..++-..... -.+-...|+.++...+.-+.+.+ .. |.+.+..+..++...+-... .+....++.++.
T Consensus 203 ~~lk~~~~~~--t~~g~qeLv~ii~eQa~Ld~~f~-------~s---D~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~ 270 (556)
T PF05918_consen 203 KSLKIYGGKQ--TIEGRQELVDIIEEQADLDQPFD-------PS---DPESIDRLISCLRQALPFFSRGVSSSKFVNYMC 270 (556)
T ss_dssp HTSGG---GS--SHHHHHHHHHHHHHHHTTTS----------SS---SHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHH
T ss_pred HhCccccccC--ChHHHHHHHHHHHHHhccCCCCC-------Cc---CHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHH
Confidence 6665310000 01334557777777666544422 11 22244445555554444433 223344444544
Q ss_pred HHHHHhhcccCCCChhhHHH--HHHHHHHhhhcCcchhhhccchHHHHHHHHHHh
Q 002789 442 NSLANAVTFSADRNVEEVEA--ALTLLYALGESMSEEAMRTGAGHLSELVPMLLQ 494 (881)
Q Consensus 442 ~~l~~~l~~~~~~~w~~~Ea--aL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~ 494 (881)
.+.+.. |.++.. -+.++..+||.++-....+....++.++..|..
T Consensus 271 ---~kvlP~-----l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 271 ---EKVLPK-----LSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK 317 (556)
T ss_dssp ---HHTCCC-----TT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred ---HHhcCC-----hhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 344443 333322 256777888865432211135667777776653
No 121
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=51.28 E-value=2.3e+02 Score=29.85 Aligned_cols=75 Identities=7% Similarity=0.101 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhccccccccccc---ccccccHHHHHHHHhh----------CCCChhHHHH
Q 002789 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINL---IANDAFIPLLFELILA----------DGLPEQFRGA 255 (881)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~---~~~~~~l~~l~~~L~~----------~~~~~~~~~~ 255 (881)
.+.++.....++.. .+++.....++++.+++.=++... +..+.+.+++.+.+.. ..+...+-..
T Consensus 117 ~~liiP~iL~llDD---~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 117 WPLIIPPILNLLDD---YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred hhHHHhhHHHHhcC---CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 77777777777775 377888899999999988665554 4445544444433321 1234567788
Q ss_pred HHHHHHHHHhc
Q 002789 256 AVGCVLAVVSK 266 (881)
Q Consensus 256 a~~~l~~ii~~ 266 (881)
|..|+..++..
T Consensus 194 ay~~L~~L~~~ 204 (282)
T PF10521_consen 194 AYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHh
Confidence 89999888764
No 122
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=50.40 E-value=4.8e+02 Score=30.61 Aligned_cols=209 Identities=12% Similarity=0.188 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcc-hhhH-HHHHHHhhhh-
Q 002789 504 LVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL-VPFI-ENILQSLQDT- 580 (881)
Q Consensus 504 ~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l-~p~~-~~il~~l~~~- 580 (881)
.+....+.-+.+...|+..+|.++..++.+.+. --......+|-.|.-.+.++|....+.+ .|-+ ...+..+.++
T Consensus 257 e~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~--vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk 334 (661)
T KOG2256|consen 257 EVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVH--VWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSK 334 (661)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--eeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC
Confidence 333333345666777888888888887777652 1122345677778777888888776654 3322 2222222222
Q ss_pred hhcccccCcccccCCCccchh-HHHHHHHHHhccCCCCccchHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHH--H
Q 002789 581 IARFTSMNYASKELSGSEDGS-HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFA--N 657 (881)
Q Consensus 581 l~~~~~p~~~~~~~~~~~~~~-~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~--~ 657 (881)
+.. | ..-..+ .+.-++.-+.+- +++.-+.+.-..+..+-..+.+++. ..+.++.+.+- +
T Consensus 335 ~~~---~--------~tl~~i~Fl~~slvEL~~l---d~~~~Yq~aF~yIrQLAihLRnam~----~k~K~s~~~VYnWq 396 (661)
T KOG2256|consen 335 FVT---V--------NTLPLINFLQNSLVELLGL---DLQVSYQHAFVYIRQLAIHLRNAMI----TKNKESVQSVYNWQ 396 (661)
T ss_pred CCC---C--------cccchhHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHH
Confidence 110 0 111112 222233333322 3322222221122222222233322 22334444442 3
Q ss_pred -HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcC--CCChhHhhHHHHHHHHHHHhhCccccccHHHH
Q 002789 658 -IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF--PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKA 734 (881)
Q Consensus 658 -~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~--~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~ 734 (881)
++|+-.++..++..-.+ .+.++++.-.+.+++.-+..-. ++.-++|=.+...+.++....| .+.|..|.+
T Consensus 397 fi~cL~lW~rvisf~~~~------~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll 469 (661)
T KOG2256|consen 397 YVHCLDLWLRVISFANGS------ASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLL 469 (661)
T ss_pred HHHHHHHHHHHHHHhhcc------HhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcC-ceeecHHHH
Confidence 88888888888751111 2234555555566666554433 3455677667777777776555 366888877
Q ss_pred HHHHH
Q 002789 735 LEQLL 739 (881)
Q Consensus 735 ~~~ll 739 (881)
++.+=
T Consensus 470 ~Eml~ 474 (661)
T KOG2256|consen 470 VEMLK 474 (661)
T ss_pred HHHHH
Confidence 77664
No 123
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=49.73 E-value=2.4e+02 Score=27.02 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhh--cC-CCChhhHHHHHHhhcCCchhHHHHHHHHHH
Q 002789 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFE--YP-LIWSSVFVDFLPQLNKGSMVIDMFCRVLNS 157 (881)
Q Consensus 81 ~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~--~p-~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~ 157 (881)
.||.-|++.+.... . +...-++++++++.++... ++ ..|+++-+-+.+...+.+. -++.++..
T Consensus 3 eikplLIsCL~~q~---------~--k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~~---kA~~IF~~ 68 (174)
T PF04510_consen 3 EIKPLLISCLTMQE---------T--KESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEPV---KAFHIFIC 68 (174)
T ss_pred chHHHHHHHHHhhc---------c--cHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccchH---HHHHHHHh
Confidence 47788888888762 1 2222255666665555444 34 4899999888887755442 23444444
Q ss_pred HH
Q 002789 158 LD 159 (881)
Q Consensus 158 l~ 159 (881)
||
T Consensus 69 L~ 70 (174)
T PF04510_consen 69 LP 70 (174)
T ss_pred CC
Confidence 44
No 124
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=48.11 E-value=1.4e+02 Score=27.45 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=67.4
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhcc---CChhHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
.+.|.-+.++. .....-.-..+++..+..++.+-.-+...|.. ++++.++..|+.+|+..+++.-..+-.+- .
T Consensus 2 ~~~I~kATs~~--~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i--~ 77 (133)
T cd03561 2 TSLIERATSPS--LEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV--A 77 (133)
T ss_pred hHHHHHHcCcc--cCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH--h
Confidence 34566666653 23345667788888888887776666666552 35799999999999999997543222211 1
Q ss_pred HHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHh
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYF 124 (881)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~ 124 (881)
=|.++.+ +.+...+ .+..+.-||+|+..++-.-...
T Consensus 78 s~~fl~~-l~~l~~~------~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 78 DKEFLLE-LVKIAKN------SPKYDPKVREKALELILAWSES 113 (133)
T ss_pred hHHHHHH-HHHHhCC------CCCCCHHHHHHHHHHHHHHHHH
Confidence 1455555 3333210 0011677989988877665543
No 125
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=47.58 E-value=3.7e+02 Score=32.02 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 002789 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLA 262 (881)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ 262 (881)
.+.++..+...+..-...+..++..|+.+++.+..-.+ ....+.++..+.+...++++|.+|...|..
T Consensus 519 ~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 519 HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP------EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H------HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc------HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 44455555444443212356778889999886533221 345677777777666688999999876644
No 126
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=47.33 E-value=1.3e+02 Score=28.64 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhc
Q 002789 548 SRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIG 612 (881)
Q Consensus 548 ~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~ 612 (881)
...+..++..+.+..+..-.||++.++..+...+... +...+..++.-++.+++
T Consensus 104 h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~-----------~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 104 HTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC-----------PDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-----------CHHHHHHHHHHHHHHHH
Confidence 3466777777777766666899999998887777644 23445567777776664
No 127
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.33 E-value=3.6e+02 Score=28.05 Aligned_cols=144 Identities=11% Similarity=0.123 Sum_probs=76.6
Q ss_pred CCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHH--HHHHHHHHHhHHHHhhcCCChHHH
Q 002789 453 DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVA--LVYLETVTRYMKFIQEHTQYIPVV 530 (881)
Q Consensus 453 ~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~--~~~~~~igry~~~l~~~~~~L~~v 530 (881)
+.++..++-|+.++..+-+.++.+.- ....+.-++....+ ++ .+|+.+. ...+..+.+...| .++....+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L--~~~ev~~L~~F~~~-rl--~D~~~~~~~l~gl~~L~~~~~~---~~~~~~~i 81 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFL--SRQEVQVLLDFFCS-RL--DDHACVQPALKGLLALVKMKNF---SPESAVKI 81 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhc--cHHHHHHHHHHHHH-Hh--ccHhhHHHHHHHHHHHHhCcCC---ChhhHHHH
Confidence 36788899999988888888875431 12233444444443 23 4555553 2223333333322 23345566
Q ss_pred HHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHH
Q 002789 531 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLL 610 (881)
Q Consensus 531 L~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~l 610 (881)
+..+++...+..-....|..+-..+..+.++.+..+...-+.++..+-+.+..-. .++..+.+|+-+-.+
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEk----------DPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEK----------DPRNLLLSFKLLKVI 151 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCC----------CHHHHHHHHHHHHHH
Confidence 6666543333333335666666677777777665553333344444433333221 355666777777666
Q ss_pred hccC
Q 002789 611 IGME 614 (881)
Q Consensus 611 i~~~ 614 (881)
+..-
T Consensus 152 ~~~~ 155 (262)
T PF14500_consen 152 LQEF 155 (262)
T ss_pred HHhc
Confidence 6553
No 128
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.11 E-value=3.6e+02 Score=32.66 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=75.1
Q ss_pred HHHhcChhhHHHHHHHHHHHhhccc-CCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhH
Q 002789 427 SVGRVAPEVTQVFIRNSLANAVTFS-ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLV 505 (881)
Q Consensus 427 ~i~~~~~~~~l~~i~~~l~~~l~~~-~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v 505 (881)
.++.+.|+.+++-+.+.-.+.-... ...-...=||-+..+.+.||.+.. +...++...+. ++. +|....
T Consensus 794 ~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~--------y~~~Li~tfl~-gvr-epd~~~ 863 (982)
T KOG4653|consen 794 SLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK--------YKAVLINTFLS-GVR-EPDHEF 863 (982)
T ss_pred HHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH--------HHHHHHHHHHH-hcC-CchHHH
Confidence 5556666655555443222111110 011123336666666677765533 33445554443 343 455555
Q ss_pred HHHHHHHHHHhHHHHhhc-CCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHH
Q 002789 506 ALVYLETVTRYMKFIQEH-TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE 571 (881)
Q Consensus 506 ~~~~~~~igry~~~l~~~-~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~ 571 (881)
|...|-.+|..+.-+... .+++..+++.++.- ...+...-||++|++.+..+-...+..+.|.+.
T Consensus 864 RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l-~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 864 RASSLANLGQLCQLLAFQVSDFFHEVLQLILSL-ETTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 666666777777655532 33555565555431 134566779999999999998888888888543
No 129
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.54 E-value=5.8e+02 Score=30.73 Aligned_cols=201 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhcchhh-HHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCc----cchH
Q 002789 548 SRRASYLFMRVVKLLKAKLVPF-IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPP----EKQS 622 (881)
Q Consensus 548 ~~~A~~~f~~~~~~~~~~l~p~-~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~----~~~~ 622 (881)
|+.||..++.|++..|..+... ++++++.++.=-. .++..-+..|++..+++..+.|. +.+.
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~-------------D~E~ik~~LdTl~il~~~dd~~~v~dds~qs 106 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM-------------DPEIIKYALDTLLILTSHDDSPEVMDDSTQS 106 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC-------------CHHHHHHHHHHHHHHHhcCcchhhcccchhh
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhc
Q 002789 623 DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVV 701 (881)
Q Consensus 623 ~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~ 701 (881)
.-++.=+.-.+-+=+..+.-....-+..+...... +.-+...++.-+....+- ..+++..+.-++..+.
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~---------ll~~P~gIS~lmdlL~- 176 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA---------LLVSPMGISKLMDLLR- 176 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH---------HHHCchhHHHHHHHHh-
Q ss_pred CCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHH
Q 002789 702 FPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIF 781 (881)
Q Consensus 702 ~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~ 781 (881)
...++|| .+.+-+++.++..-++ +..++. |...|++.|
T Consensus 177 -DsrE~IR--------------------------------------Ne~iLlL~eL~k~n~~-IQKlVA--FENaFerLf 214 (970)
T KOG0946|consen 177 -DSREPIR--------------------------------------NEAILLLSELVKDNSS-IQKLVA--FENAFERLF 214 (970)
T ss_pred -hhhhhhc--------------------------------------hhHHHHHHHHHccCch-HHHHHH--HHHHHHHHH
Q ss_pred hhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 002789 782 NIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSS 824 (881)
Q Consensus 782 ~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~ 824 (881)
.++.... +-..+. +..+.+.|+..+++++-+.
T Consensus 215 sIIeeEG---g~dGgI--------VveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 215 SIIEEEG---GLDGGI--------VVEDCLILLNNLLKNNISN 246 (970)
T ss_pred HHHHhcC---CCCCcc--------hHHHHHHHHHHHHhhCcch
No 130
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=42.36 E-value=2.9e+02 Score=25.76 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=67.3
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhc---cCChhHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS---LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~---~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
++.|+-+-++. -....-.-..+++..+..++.+-..|...+. .+.++++..+|+.+|+..+++.-..+-.+-
T Consensus 2 e~~iekATse~--l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev--- 76 (144)
T cd03568 2 DDLVEKATDEK--LTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV--- 76 (144)
T ss_pred hHHHHHHcCcc--CCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH---
Confidence 45666677663 2334567778899999888777777776665 246799999999999999998543322111
Q ss_pred HHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHH
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIY 123 (881)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~ 123 (881)
-....++-+.+... . . .+.-|++|+..++-.-..
T Consensus 77 ask~Fl~eL~kl~~-----~-~--~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 77 ASRDFTQELKKLIN-----D-R--VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred hhHHHHHHHHHHhc-----c-c--CCHHHHHHHHHHHHHHHH
Confidence 12233344444321 0 1 166788998877766543
No 131
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=41.88 E-value=37 Score=32.57 Aligned_cols=76 Identities=9% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcc
Q 002789 505 VALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARF 584 (881)
Q Consensus 505 v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~ 584 (881)
+|.++++++-..-+-...+-+ +..++..+. .|+.+ +..++--|+..+.|++..++..+.+.++.+++.++..+...
T Consensus 43 lRK~ayE~lytlLd~~~~~~~-~~~~~~~v~--~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k 118 (169)
T PF08623_consen 43 LRKAAYECLYTLLDTCLSRID-ISEFLDRVE--AGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKK 118 (169)
T ss_dssp HHHHHHHHHHHHHHSTCSSS--HHHHHHHHH--HTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhCC-HHHHHHHHH--hhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhcc
Confidence 576777766554442222222 344455554 78887 88999999999999999999988888888888887777644
No 132
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.65 E-value=8.4e+02 Score=30.65 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=40.9
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccCChhHHHHHHHHHHHHH
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEV 66 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~ 66 (881)
...+..+-|+ |+..|+.|-+.|-++. .+++-......|. ++++.||.-|+..|...
T Consensus 624 ~~L~~~L~D~----d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 624 AELAPYLADP----DPGVRRTAVAVLTETT-PPGFGPALVAALG-DGAAAVRRAAAEGLREL 679 (897)
T ss_pred HHHHHHhcCC----CHHHHHHHHHHHhhhc-chhHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 3444555554 8999999999998886 4566666677774 46788999998888654
No 133
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.32 E-value=78 Score=29.21 Aligned_cols=45 Identities=7% Similarity=0.238 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHhHHHHhh----cCCChHHHHHHhhcccCCCCCCchhhhHHHHHH
Q 002789 503 RLVALVYLETVTRYMKFIQE----HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLF 555 (881)
Q Consensus 503 p~v~~~~~~~igry~~~l~~----~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f 555 (881)
+.+....+.+++.|.+|... +..+++.++. + + +++.++..|+.++
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~-~-----l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQ-L-----L--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHH-H-----T--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHH-H-----c--CCHHHHHHHHHhC
Confidence 66677888899999998865 3445555443 3 2 3445688887754
No 134
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.28 E-value=2.7e+02 Score=29.43 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=71.6
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCC
Q 002789 422 LVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHS 501 (881)
Q Consensus 422 ~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~ 501 (881)
-..++.+...-++.+-+.+...+-..+.+..+..=..--||...+..+.+...... .+.+..++..|+. ....+
T Consensus 109 Ln~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i----~~~ld~lv~~Ll~--ka~~d 182 (334)
T KOG2933|consen 109 LNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI----DQELDDLVTQLLH--KASQD 182 (334)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh--hhccc
Confidence 34455555555555555555444444433222222222333333333333333222 2233344444443 33456
Q ss_pred ChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhh--hcchhhHHHHHHHhhh
Q 002789 502 NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK--AKLVPFIENILQSLQD 579 (881)
Q Consensus 502 ~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~--~~l~p~~~~il~~l~~ 579 (881)
+..|+-..-..+....... .|.-+.+-| . .+..+.+++++..+|..|-+.+.... +...+++..+.+.+++
T Consensus 183 nrFvreda~kAL~aMV~~v--tp~~~L~~L---~--~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~ 255 (334)
T KOG2933|consen 183 NRFVREDAEKALVAMVNHV--TPQKLLRKL---I--PILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQE 255 (334)
T ss_pred chHHHHHHHHHHHHHHhcc--ChHHHHHHH---H--HHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHh
Confidence 6666544333333322221 244333332 2 23577899999999999999887765 3345667666676654
No 135
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=38.21 E-value=6.4e+02 Score=28.57 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=43.7
Q ss_pred hhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhccc
Q 002789 521 QEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFT 585 (881)
Q Consensus 521 ~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~ 585 (881)
..=|.=|.|++..++++- =.+.++.+|.+++.++.+|.+.|...-..=.+-|+..+..++...+
T Consensus 304 ~~lP~KLnPiIrpLMdSI-K~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~ 367 (441)
T PF12054_consen 304 GGLPKKLNPIIRPLMDSI-KREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDT 367 (441)
T ss_pred ccCCCCccHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCc
Confidence 334666666655554321 1346788999999999999999984443345778888877776543
No 136
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=36.51 E-value=5e+02 Score=26.86 Aligned_cols=133 Identities=18% Similarity=0.148 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHhhcCC-chhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 002789 107 PAFIRNKLAQVLVTLIYFEYPLIWS-----SVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARI 180 (881)
Q Consensus 107 ~~~vr~kl~~~l~~l~~~~~p~~Wp-----~~i~~l~~~~~~~-~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~l 180 (881)
.++++.++..++...+. ||.... ..++-+.+.+... +....-++..|.-++.... ....+
T Consensus 26 dp~i~e~al~al~n~aa--f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e------------n~~~I 91 (254)
T PF04826_consen 26 DPFIQEKALIALGNSAA--FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE------------NQEQI 91 (254)
T ss_pred ChHHHHHHHHHHHhhcc--ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh------------hHHHH
Confidence 57888888888887654 443221 2333344444443 3344455665554322111 11112
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHH
Q 002789 181 KDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCV 260 (881)
Q Consensus 181 k~~~~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l 260 (881)
+.. ++.+++. ++.. ..+..+...+|+.|.+.----+...+. .+.++-++.+|. .++..++..++.+|
T Consensus 92 ----k~~-i~~Vc~~---~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~--~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 92 ----KMY-IPQVCEE---TVSS--PLNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLS--SGSEKTKVQVLKVL 158 (254)
T ss_pred ----HHH-HHHHHHH---HhcC--CCCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHH--cCChHHHHHHHHHH
Confidence 222 4444332 2221 235567778888888764222221222 235777788888 45888999999988
Q ss_pred HHHHhc
Q 002789 261 LAVVSK 266 (881)
Q Consensus 261 ~~ii~~ 266 (881)
..+..+
T Consensus 159 ~nLS~n 164 (254)
T PF04826_consen 159 VNLSEN 164 (254)
T ss_pred HHhccC
Confidence 877654
No 137
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=36.39 E-value=1.2e+02 Score=29.14 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHHHHHHHh
Q 002789 802 EVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLH 868 (881)
Q Consensus 802 ~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~ 868 (881)
+--|+|++.|+++.+++..|+..+ .+..++..+..|..| +..++-.|+ ..++++.
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~--------~~~~~~~~v~~GL~D--~~DIk~L~~--~~l~kl~ 93 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRI--------DISEFLDRVEAGLKD--EHDIKMLCH--LMLSKLA 93 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS---------HHHHHHHHHHTTSS---HHHHHHHH--HHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHhhcCC--cHHHHHHHH--HHHHHHH
Confidence 557899999999999999886655 356688888878666 566666676 4555554
No 138
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.10 E-value=4.8e+02 Score=32.93 Aligned_cols=198 Identities=12% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhhhcCcchhhhccchHHHHHHHHHH--hCCCCCCCChhHHHHHHHHHHHhH----HHHhhcCCChHHHHHHhhcccCCC
Q 002789 468 ALGESMSEEAMRTGAGHLSELVPMLL--QTKLPCHSNRLVALVYLETVTRYM----KFIQEHTQYIPVVLAAFLDERGIH 541 (881)
Q Consensus 468 ~i~e~~~~~~~~~~~~~l~~ll~~l~--~~~~~~~~~p~v~~~~~~~igry~----~~l~~~~~~L~~vL~~~l~~~gl~ 541 (881)
.+...|..+.-..++..++.+.+.+. |++..-..+|.++.++.-.+||+. +|...|-.+|-++| --
T Consensus 900 ~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftim--------ek 971 (1251)
T KOG0414|consen 900 LISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIM--------EK 971 (1251)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------hc
Q ss_pred CCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccch
Q 002789 542 HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQ 621 (881)
Q Consensus 542 ~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~ 621 (881)
.|+|.||.-+.-++..|+=....-+-|+.+.+...+ .+.-..+.+..+.+++.
T Consensus 972 sp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL-------------------~D~~~~vRkta~lvlsh-------- 1024 (1251)
T KOG0414|consen 972 SPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRL-------------------RDESPSVRKTALLVLSH-------- 1024 (1251)
T ss_pred CCCceeeecchheccchhhhcccccchhhHHHHHHh-------------------cCccHHHHHHHHHHHHH--------
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhh
Q 002789 622 SDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILV 700 (881)
Q Consensus 622 ~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~ 700 (881)
.++. ....=..++.++....++.
T Consensus 1025 --------------------------------LILndmiKVKGql~eMA~cl~D~~------------------------ 1048 (1251)
T KOG0414|consen 1025 --------------------------------LILNDMIKVKGQLSEMALCLEDPN------------------------ 1048 (1251)
T ss_pred --------------------------------HHHhhhhHhcccHHHHHHHhcCCc------------------------
Q ss_pred cCCCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhhHHHHHHHHHHHHHHhhcc
Q 002789 701 VFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTL 764 (881)
Q Consensus 701 ~~~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~~~~ 764 (881)
..|++.++.||+.+-. =|..+-..||.++..+-.. +..+ ..|=.....++.-.+.+
T Consensus 1049 -----~~IsdlAk~FF~Els~-k~n~iynlLPdil~~Ls~~-~l~~-~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1049 -----AEISDLAKSFFKELSS-KGNTIYNLLPDILSRLSNG-NLEE-ESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred -----HHHHHHHHHHHHHhhh-cccchhhhchHHHHhhccC-cccc-hhhHHHHHHHHHHhccc
No 139
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=35.55 E-value=3.6e+02 Score=32.96 Aligned_cols=219 Identities=14% Similarity=0.126 Sum_probs=105.3
Q ss_pred CHHHHHHHHH---HHHH---HhcCcchHHHHHHHhccCC-----hhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Q 002789 19 DSMLKSQAVN---FCQQ---IKETPSICRICIEKLSLCN-----IVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVF 87 (881)
Q Consensus 19 ~~~~r~~A~~---~L~~---~q~~~~~w~~~~~lL~~~~-----~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll 87 (881)
+...+.+|.+ |+.+ .+++|++-.++..++..-+ ++.++-|...+.+..--.+.... .+-|...||..+
T Consensus 787 s~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~-a~~riLykQRfF 865 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGH-AEPRILYKQRFF 865 (1030)
T ss_pred CcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccc-cchhHHHHHHHH
Confidence 3344555554 4443 4457777776666665322 24555555544433222211111 123345555554
Q ss_pred HHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHhhhcC
Q 002789 88 SMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSM-VIDMFCRVLNSLDDELISLD 166 (881)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~-~~~~~L~iL~~l~eEv~~~~ 166 (881)
.-+.....++-...++.. .+..-.-++.++...=++.--..-|..++=+++.++-... ..--.++++..+-.|..
T Consensus 866 ~~ivP~l~~~~~t~~~~~-K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~--- 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQ-KHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE--- 941 (1030)
T ss_pred HhhHHHHHHHhccCCccc-hhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc---
Confidence 433321111101111111 2222255555555444433334567788888887765432 21223333333222211
Q ss_pred CCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCC-HHHHHHHHHHhccccccccccccc--ccccHHHHHHHH
Q 002789 167 YPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSD-FEVCTGVLDCMRRYISWIDINLIA--NDAFIPLLFELI 243 (881)
Q Consensus 167 ~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~~-~~l~~~~L~~l~~~i~wi~~~~~~--~~~~l~~l~~~L 243 (881)
..+.++ +..++..+..+=.. ++.+ ..++..+|+|+.......|.+.+. .+..+..+...|
T Consensus 942 ---------------tL~t~~-~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L 1004 (1030)
T KOG1967|consen 942 ---------------TLQTEH-LSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL 1004 (1030)
T ss_pred ---------------ccchHH-HhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc
Confidence 112223 66666665543222 1112 457788999999988877766542 355666666666
Q ss_pred hhCCCChhHHHHHHHHHH
Q 002789 244 LADGLPEQFRGAAVGCVL 261 (881)
Q Consensus 244 ~~~~~~~~~~~~a~~~l~ 261 (881)
. ++.--+|.+|++|=.
T Consensus 1005 d--DkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 1005 D--DKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred C--cHHHHHHHHHHHHhh
Confidence 6 233356777777643
No 140
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=35.34 E-value=1.2e+02 Score=28.12 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=32.3
Q ss_pred HhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch
Q 002789 520 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (881)
Q Consensus 520 l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~ 567 (881)
+...|.--..++.++. +.+.+++++|+-+|-.++-.++++|+..+-
T Consensus 29 In~~~~~~k~a~rai~--krl~~~n~~v~l~AL~LLe~~vkNCG~~fh 74 (139)
T cd03567 29 INKEPEGPQLAVRLLA--HKIQSPQEKEALQALTVLEACMKNCGERFH 74 (139)
T ss_pred HHcCCccHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3334433233344443 447788999999999999999999998663
No 141
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.25 E-value=9e+02 Score=29.40 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccc-cCcccccCCCccchhHHHHHHHHHhccCC
Q 002789 552 SYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTS-MNYASKELSGSEDGSHIFEAIGLLIGMED 615 (881)
Q Consensus 552 ~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~-p~~~~~~~~~~~~~~~l~Eaig~li~~~~ 615 (881)
..++.|+..-....+.|+.+.++.++-+++....+ |+ .+.--.|+||++|.++..+.
T Consensus 569 mKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs-------~P~fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 569 MKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPS-------NPQFNHYLFESIGLLIRKTC 626 (960)
T ss_pred HHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCC-------CchhHHHHHHHHHHHHHHHh
Confidence 45667777777777889999999998887654432 42 35566799999999997644
No 142
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=35.20 E-value=2.8e+02 Score=23.56 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=49.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHH
Q 002789 40 CRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLV 119 (881)
Q Consensus 40 w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~ 119 (881)
++.+..-+.+ +.+-+|-.|+..|++.|.++- .+......+-.-+++.+.. + .+||-=...+.++
T Consensus 5 ~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-----------~--DsyVYL~aI~~L~ 68 (92)
T PF10363_consen 5 LQEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-----------E--DSYVYLNAIKGLA 68 (92)
T ss_pred HHHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-----------C--CchHHHHHHHHHH
Confidence 3344444443 447799999999999999764 3444444444444443332 2 5677667777888
Q ss_pred HHHHhhcCCCChhhHHHHHHhh
Q 002789 120 TLIYFEYPLIWSSVFVDFLPQL 141 (881)
Q Consensus 120 ~l~~~~~p~~Wp~~i~~l~~~~ 141 (881)
.++-. +|. ..++.++...
T Consensus 69 ~La~~-~p~---~vl~~L~~~y 86 (92)
T PF10363_consen 69 ALADR-HPD---EVLPILLDEY 86 (92)
T ss_pred HHHHH-ChH---HHHHHHHHHH
Confidence 88765 332 2555555544
No 143
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=34.97 E-value=9.7e+02 Score=29.72 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=29.3
Q ss_pred hHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCC
Q 002789 39 ICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSM 74 (881)
Q Consensus 39 ~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l 74 (881)
-|+....++..++..+.|..++..+++.|.++...+
T Consensus 68 lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l 103 (1697)
T KOG3687|consen 68 LWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERL 103 (1697)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHH
Confidence 577777777777779999999999999999876544
No 144
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.94 E-value=4e+02 Score=26.57 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhh--H-HHHHHHHHHHHHH---hhcchHHHhhhhHHHHHHHHHh
Q 002789 709 RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE--M-AGFLVLLNQLICK---FNTLVHDILDEVFPAIAGRIFN 782 (881)
Q Consensus 709 r~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~--~-~~~L~l~~~li~~---~~~~~~~~l~~ll~~l~~~~~~ 782 (881)
|-..+..++-++...|+.+.|.||.++-.+=..+.+.+ + -..|..+.+++.. .|....|+-.+++.++- +|.
T Consensus 131 rf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n--~~k 208 (262)
T KOG3961|consen 131 RFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLN--TFK 208 (262)
T ss_pred chhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhh--hhc
Confidence 33567777888888999999999999988766554332 2 2335556665543 44455677666664332 223
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002789 783 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVI 817 (881)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i 817 (881)
-.+.+. +++.+.|.-+.--|+..+-++.+.+.
T Consensus 209 ~~n~n~---gd~idydk~~~igdlI~dTL~~LE~~ 240 (262)
T KOG3961|consen 209 NSNVNR---GDGIDYDKNRNIGDLINDTLKHLERS 240 (262)
T ss_pred cccccc---ccccCccccccHHHHHHHHHHHHHHc
Confidence 232222 33455555566677777777666553
No 145
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.29 E-value=1.7e+02 Score=28.33 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHhcccccc-ccccc-ccccccHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 002789 188 CVEQIVRAWYDIVSMYR--SSDFEVCTGVLDCMRRYISW-IDINL-IANDAFIPLLFELILADGLPEQFRGAAVGCVLAV 263 (881)
Q Consensus 188 ~~~~i~~~~~~iL~~~~--~~~~~l~~~~L~~l~~~i~w-i~~~~-~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~i 263 (881)
.+..+++.+..+..... ..+.+....+++|++..+.- ..... +.+++.+..+..+|. .+++.+|..|++.|..+
T Consensus 108 G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 108 GLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
Confidence 35566666555544321 13456777899999987753 22333 344788999998888 45889999999988766
Q ss_pred H
Q 002789 264 V 264 (881)
Q Consensus 264 i 264 (881)
.
T Consensus 186 c 186 (187)
T PF06371_consen 186 C 186 (187)
T ss_dssp H
T ss_pred H
Confidence 4
No 146
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.85 E-value=8.4e+02 Score=28.66 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=22.1
Q ss_pred CCCCchhhhHHHHHHHHHHHHhhhcchhh
Q 002789 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPF 569 (881)
Q Consensus 541 ~~~~~~v~~~A~~~f~~~~~~~~~~l~p~ 569 (881)
....+.+|..|.++|.++++.|+..+.+.
T Consensus 490 ~~~~~~iR~~Av~Alr~~a~~~p~~v~~~ 518 (574)
T smart00638 490 EPLSTFIRLAAILALRNLAKRDPRKVQEV 518 (574)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 33456799999999999998887765543
No 147
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.83 E-value=9e+02 Score=29.01 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHHhc-CcchHHHHHHHhccC---ChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 002789 18 IDSMLKSQAVNFCQQIKE-TPSICRICIEKLSLC---NIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (881)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~~~---~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~ 93 (881)
.|-+.|+-.+.||...-. .|+--..|...+... .++.+|..|++++-. +.- ..+-..+++-+.+.
T Consensus 61 ~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~--------l~v---~~i~ey~~~Pl~~~ 129 (734)
T KOG1061|consen 61 RDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGC--------LRV---DKITEYLCDPLLKC 129 (734)
T ss_pred CCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceee--------Eee---hHHHHHHHHHHHHh
Confidence 466777778888876554 777666666666542 348888888876542 111 12333444444443
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhc-CCchhHHHHHHHHHHHHHHhh
Q 002789 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLN-KGSMVIDMFCRVLNSLDDELI 163 (881)
Q Consensus 94 ~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~-~Wp~~i~~l~~~~~-~~~~~~~~~L~iL~~l~eEv~ 163 (881)
. ..+ .+++|.+.+..++.+....--. +=..+++.+-.++. +++..+-+.+..|..|.|.=.
T Consensus 130 l--------~d~-~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 130 L--------KDD-DPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred c--------cCC-ChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 1 112 7899888888888776543211 22456666666666 456778889999988877654
No 148
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.07 E-value=8.7e+02 Score=28.56 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHH
Q 002789 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVL 261 (881)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~ 261 (881)
.+.++..+...+..-...++.++..++.+|+....- .....-+.++..+.+...++++|.+|+..+.
T Consensus 475 ~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~------~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 475 HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR------DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh------CchHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 444455554444421233556777788777743221 1133555666666655567888988887663
No 149
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=33.07 E-value=7.5e+02 Score=27.85 Aligned_cols=73 Identities=8% Similarity=0.165 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhcccccccccccccc--cccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcC
Q 002789 191 QIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN--DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKR 267 (881)
Q Consensus 191 ~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~--~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~ 267 (881)
.....+...|. +.+.-+...+..++...++|-..+.... ..+.+.+...+.++ .+......|+.|+.+++...
T Consensus 101 ~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~~~ 175 (429)
T cd00256 101 KTWEPFFNLLN---RQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLRVD 175 (429)
T ss_pred cchHHHHHHHc---CCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhCCc
Confidence 34444444554 3345566778888888887754321110 11333344444421 24667788889999988653
No 150
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=32.77 E-value=73 Score=28.52 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhccccccccccc--ccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 002789 191 QIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINL--IANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (881)
Q Consensus 191 ~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~--~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~ 266 (881)
.++..+.++|.. +.++..+..++.=++.|+...|-+- +..-..-..+++++. ++++++|..|+.|+..++..
T Consensus 43 ~llk~L~~lL~~--s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDK--SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc--CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence 445555566643 2355555566777777776655331 111234456677777 67999999999999888754
No 151
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=30.32 E-value=1.1e+03 Score=28.71 Aligned_cols=140 Identities=20% Similarity=0.301 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHH-HHHHHHhHHHHhhcCCChHHHHHHhhcc
Q 002789 459 VEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVY-LETVTRYMKFIQEHTQYIPVVLAAFLDE 537 (881)
Q Consensus 459 ~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~-~~~igry~~~l~~~~~~L~~vL~~~l~~ 537 (881)
.+.++.++|.++..=.....-...+.++.++..++..+-...+...++..+ +-.--|++.-+.. -+-|+..+..-
T Consensus 387 ~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra--- 462 (708)
T PF05804_consen 387 REVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRA--- 462 (708)
T ss_pred HHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHH---
Confidence 466888888877621100000134568888888875211111111222222 1223344443332 23355544433
Q ss_pred cCCCCCCchhhhHHHHHHHHHHHH---hhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccC
Q 002789 538 RGIHHPNVHVSRRASYLFMRVVKL---LKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGME 614 (881)
Q Consensus 538 ~gl~~~~~~v~~~A~~~f~~~~~~---~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~ 614 (881)
+....+ .....++++++. .+..+.+|+.+|+..+ . ..++.-.+.|++|++..-.
T Consensus 463 --~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v----~-------------~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 463 --LKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIV----S-------------SGDSEEFVVECLGILANLT 519 (708)
T ss_pred --HhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHh----h-------------cCCcHHHHHHHHHHHHhcc
Confidence 222222 112344444432 2334456666666543 2 1234568999999876543
Q ss_pred CCCccchHHHHH
Q 002789 615 DVPPEKQSDYLS 626 (881)
Q Consensus 615 ~~~~~~~~~~l~ 626 (881)
.+...-..+++
T Consensus 520 -~~~ld~~~ll~ 530 (708)
T PF05804_consen 520 -IPDLDWAQLLQ 530 (708)
T ss_pred -cCCcCHHHHHH
Confidence 24344455554
No 152
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.15 E-value=5.4e+02 Score=36.70 Aligned_cols=205 Identities=15% Similarity=0.150 Sum_probs=97.0
Q ss_pred chHHHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHH
Q 002789 620 KQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQI 698 (881)
Q Consensus 620 ~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~ 698 (881)
+-+.+...++.-++.++....... .++.....+ ++. +.+++++ |...+...-.+.+..|..+.++....+
T Consensus 575 ts~~fa~ill~fll~rl~e~gs~~-----~~~s~l~LrLFkl---~F~sv~~-f~~~nervl~phv~~Ii~~smela~~a 645 (3550)
T KOG0889|consen 575 TSVNFANILLSFLLSRLKELGSND-----LLDSKLLLRLFKL---IFGSVSK-FPSENERVLRPHVHDIISTSMELATTA 645 (3550)
T ss_pred cchhHHHHHHHHHHHHHHHHccCc-----cccchhhHhhhhh---hhhhhhc-ccccchhhcccchhHHHHHHHHHHhcC
Confidence 345667777777777777664431 111122222 222 2333332 222111112344567777777666543
Q ss_pred hhcCCCChhHhhHHHHHHHHHH----HhhCccccccHHHHHHHH---HccCChhhHHHH-HHHHHHHHHHhhcchHHHhh
Q 002789 699 LVVFPKVEPLRCKVTSFIHRMV----DTLGASVFPYLPKALEQL---LAESEPKEMAGF-LVLLNQLICKFNTLVHDILD 770 (881)
Q Consensus 699 l~~~~~~~~ir~~~~~~~~~~v----~~lg~~~~p~lp~~~~~l---l~~~~~~~~~~~-L~l~~~li~~~~~~~~~~l~ 770 (881)
-+ .-.-+.-+|..|+.+- ..+-.+++|+||.+++.+ +..+..+.+.+. ..++-.+=-+. +...|+++
T Consensus 646 ~e----plnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLfvELclTvPvRL-S~Llpylp 720 (3550)
T KOG0889|consen 646 PE----PLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLFVELCLTLPVRL-SSLLPYLP 720 (3550)
T ss_pred Cc----chhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHhhhHHH-HHhhhhhh
Confidence 22 1122333444444332 234567899999877644 556655544332 32222111111 22446777
Q ss_pred hhHHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCC
Q 002789 771 EVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHK 850 (881)
Q Consensus 771 ~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~ 850 (881)
-++.|++ ..++. .|+++-.-++-+.-.+-+.-+..+. +.-.|..+.+++++-..-...+
T Consensus 721 ~LM~PLv----~aLkg----------------s~~lvsQgLRtlelcvDnltPefL~-~~mepv~~~lmqaLw~~l~~~~ 779 (3550)
T KOG0889|consen 721 LLMKPLV----FALKG----------------SPELVSQGLRTLELCVDNLTPEFLD-PIMEPVRDDLMQALWSHLRPVP 779 (3550)
T ss_pred hhhhHHH----HHhcC----------------CHHHHHHHHhHHHHHHhcCChHhhh-HHHHHHHHHHHHHHHHhccCCC
Confidence 7777766 33332 2466666666665555555455542 1112233334444432223333
Q ss_pred CccchhHhh
Q 002789 851 DYLVRKVCY 859 (881)
Q Consensus 851 d~~~~k~~~ 859 (881)
+-+....|+
T Consensus 780 ~~s~s~~a~ 788 (3550)
T KOG0889|consen 780 NYSYSHRAL 788 (3550)
T ss_pred CchHHHHHH
Confidence 455566666
No 153
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=29.81 E-value=6.7e+02 Score=29.10 Aligned_cols=87 Identities=15% Similarity=0.293 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhh-cCC---ChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHH
Q 002789 486 SELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE-HTQ---YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (881)
Q Consensus 486 ~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~-~~~---~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~ 561 (881)
-.++..++. -..+|.+....+..+.++-.|... .|+ ++.+.+-.++ ||...+.++||.|+|..+.++...
T Consensus 48 lr~vn~IL~----~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~l--Rg~eskdk~VR~r~lqila~~~d~ 121 (885)
T COG5218 48 LRVVNTILA----CKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLL--RGTESKDKKVRKRSLQILALLSDV 121 (885)
T ss_pred HHHHHHhhc----cccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHH--hcccCcchhHHHHHHHHHHHHHHh
Confidence 344555543 233444444444466777776554 343 6777777777 999999999999999999888766
Q ss_pred hhhcchhhHHHHHHHhh
Q 002789 562 LKAKLVPFIENILQSLQ 578 (881)
Q Consensus 562 ~~~~l~p~~~~il~~l~ 578 (881)
.++.=-...+.++.++.
T Consensus 122 v~eIDe~l~N~L~ekl~ 138 (885)
T COG5218 122 VREIDEVLANGLLEKLS 138 (885)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 55422223455555553
No 154
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.08 E-value=1.5e+02 Score=27.59 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch
Q 002789 529 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (881)
Q Consensus 529 ~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~ 567 (881)
.++.++- ..+.+++++|+.+|..++-.++++|+..+-
T Consensus 37 ~a~ral~--KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh 73 (144)
T cd03568 37 DCLKAIM--KRLNHKDPNVQLRALTLLDACAENCGKRFH 73 (144)
T ss_pred HHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3344443 346678999999999999999999998663
No 155
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=28.58 E-value=22 Score=21.54 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHH
Q 002789 795 TNTEEIREVQELQRTLY 811 (881)
Q Consensus 795 ~~~~~~~~~~dl~~~~~ 811 (881)
..+++++.+|+++++|+
T Consensus 6 G~p~~i~~n~~V~~aYL 22 (23)
T PF12399_consen 6 GTPEEIRANPEVREAYL 22 (23)
T ss_pred cCHHHHhcCHHHHHhhC
Confidence 35678899999999986
No 156
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=28.55 E-value=9.4e+02 Score=27.54 Aligned_cols=175 Identities=15% Similarity=0.261 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcC-CCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002789 107 PAFIRNKLAQVLVTLIYFEYP-LIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMR 185 (881)
Q Consensus 107 ~~~vr~kl~~~l~~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eEv~~~~~~~~~~~~~r~~~lk~~~~ 185 (881)
+..|+.-+..+.+.=..+.|| -+|...+.-++.+ +-++......+++.-. .. .+.
T Consensus 172 p~lvkvvl~~ia~vgeS~qyPPVNWaalLsPLMRl-nfGeEvq~lCLeiAvt------Qa---qSS-------------- 227 (589)
T PF11229_consen 172 PSLVKVVLKPIATVGESYQYPPVNWAALLSPLMRL-NFGEEVQQLCLEIAVT------QA---QSS-------------- 227 (589)
T ss_pred HHHHHHHHHHhhhcCCCCCCCCccHHHHhhHHHhc-cccHHHHHHHHHHHHH------hc---ccc--------------
Confidence 445544433333222334465 4999999999987 4455555555554321 00 000
Q ss_pred HHhHHHHHHHHHH-HHHhhccCCHHHHHHHHHHhcccccccccccccccccHHHH-HHHHh--hCCCChhHHHHHHHHHH
Q 002789 186 QQCVEQIVRAWYD-IVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL-FELIL--ADGLPEQFRGAAVGCVL 261 (881)
Q Consensus 186 ~~~~~~i~~~~~~-iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l-~~~L~--~~~~~~~~~~~a~~~l~ 261 (881)
+....++..|.. -+- .+-+.......+..+..|+.-++-..+ ..|++.+ .+.+. ++..+++++..++.-+.
T Consensus 228 -qsAa~fLg~WlsPpli--~sLs~~tk~~L~~Sl~~wmkhVsedqi--Q~Fve~l~vq~F~~~~~~~~~~lC~saLqGLs 302 (589)
T PF11229_consen 228 -QSAAMFLGSWLSPPLI--HSLSVNTKKYLFESLSLWMKHVSEDQI--QAFVENLMVQQFKAASRPSNPELCQSALQGLS 302 (589)
T ss_pred -ccHHHHHHhhcCcchh--hhhhHHHHHHHHHHHHHHHhhCCHHHH--HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Confidence 013334444432 000 011223344455555555544443322 2233322 23333 11246788888888887
Q ss_pred HHHhcCCChhhh-HHHH-HHh-hhhhhccccCCCccHHHHHHHHHHHHHHHHH
Q 002789 262 AVVSKRMDPQSK-LNLL-QTL-QISRVFGLVSEDGESELVSKVAALLTGYAME 311 (881)
Q Consensus 262 ~ii~~~~~~~~k-~~ll-~~l-~l~~i~~~~~~~~d~~~~~~l~~l~~~~~~~ 311 (881)
..+... .|.+. ..++ +.. ++.+++++--+++|.+....+++++.++-.+
T Consensus 303 qAMKlP-~P~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~ 354 (589)
T PF11229_consen 303 QAMKLP-SPAQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTDT 354 (589)
T ss_pred HHhcCC-ChhhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCHH
Confidence 755443 33322 2222 221 1334443223456667777788888777543
No 157
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=28.20 E-value=6.9e+02 Score=25.87 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=81.9
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchH---------HHHHHHhccCChhHHHHHHHHHHHHHHHhhccC
Q 002789 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSIC---------RICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTS 73 (881)
Q Consensus 3 ~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w---------~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~ 73 (881)
+++..+..+=.. .||..+++|.-.+-.....|... .....++.+ +++.+|--|+.+|.+. .
T Consensus 13 ~l~~Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nl------s 82 (254)
T PF04826_consen 13 ELQKLLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNL------S 82 (254)
T ss_pred HHHHHHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhc------C
Confidence 455555444432 58888988877776655544433 444445554 5689998888888854 5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHh-hcCCCChhhHHHHHHhhcCCc-hhHHHH
Q 002789 74 MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYF-EYPLIWSSVFVDFLPQLNKGS-MVIDMF 151 (881)
Q Consensus 74 l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~-~~p~~Wp~~i~~l~~~~~~~~-~~~~~~ 151 (881)
.+.+.+..+|.++-..+.... ..+. ...+...--.++..+... ++-.--.+.+++++.++..+. .....+
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~-----s~~l---ns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~v 154 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETV-----SSPL---NSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQV 154 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHh-----cCCC---CCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHH
Confidence 667888888887666555432 1111 334433333445544322 121222456777888877754 344567
Q ss_pred HHHHHHHHH
Q 002789 152 CRVLNSLDD 160 (881)
Q Consensus 152 L~iL~~l~e 160 (881)
|++|..|++
T Consensus 155 Lk~L~nLS~ 163 (254)
T PF04826_consen 155 LKVLVNLSE 163 (254)
T ss_pred HHHHHHhcc
Confidence 777766654
No 158
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.60 E-value=8.1e+02 Score=26.48 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=54.4
Q ss_pred CCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHH-----HhhhcchhhHHHH
Q 002789 499 CHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK-----LLKAKLVPFIENI 573 (881)
Q Consensus 499 ~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~-----~~~~~l~p~~~~i 573 (881)
...|.......+.+++....++ ..+.-+.+...|. .|+.+..+.+|..-+..+...+. .....+.++++.+
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~--kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L 108 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFL--SSELPKKVVDAFK--KGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKL 108 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHH--HHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Confidence 4567666556656667666666 3444567777776 68988877787776666766664 3344455777788
Q ss_pred HHHhhhhhhcc
Q 002789 574 LQSLQDTIARF 584 (881)
Q Consensus 574 l~~l~~~l~~~ 584 (881)
++.+.......
T Consensus 109 ~~~~~~~~~~p 119 (339)
T PF12074_consen 109 LQSLKEASANP 119 (339)
T ss_pred HHHHHHHHhCC
Confidence 88777766643
No 159
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=27.52 E-value=1e+03 Score=27.55 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=76.9
Q ss_pred hHHHHHHHHHH--h---CCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCC--CchhhhHHHHHH
Q 002789 483 GHLSELVPMLL--Q---TKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHP--NVHVSRRASYLF 555 (881)
Q Consensus 483 ~~l~~ll~~l~--~---~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~--~~~v~~~A~~~f 555 (881)
..+..++...+ . +.......+.++.-++..++|-..--...|+.+.-+. .|+..+ +.+++..+...+
T Consensus 272 ~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~------~~l~~~~~~~klk~~~l~F~ 345 (501)
T PF13001_consen 272 DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVF------DGLYSDNTNSKLKSLALQFI 345 (501)
T ss_pred HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHh------ccccCCccccccchhcchhh
Confidence 44555666555 2 1111244566777777777774443333444333332 345555 667887777777
Q ss_pred ---HHHHHHhhhcch-hhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCCCCccchHHHHHHhhHH
Q 002789 556 ---MRVVKLLKAKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTP 631 (881)
Q Consensus 556 ---~~~~~~~~~~l~-p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~p 631 (881)
...++.+...+. ..-+.|+..+-+.+.... +........+.+..-||++|.+....+....+...+++.++..
T Consensus 346 ~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~---~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~s 422 (501)
T PF13001_consen 346 RGSSWIFKHISPQILKLLRPVILSQGWPLIQDSS---SQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDS 422 (501)
T ss_pred hcchHHhhhcCHHHHHHHHHHHHhcCcccccccc---ccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHH
Confidence 677777776553 344555555555552110 0001112345677899999999987653333455666655443
No 160
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=26.19 E-value=3.9e+02 Score=23.78 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=47.8
Q ss_pred ccCCCHHHHHHHHHHHHH-----HHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCC
Q 002789 71 YTSMSSEERNLIRESVFS-----MVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKG 144 (881)
Q Consensus 71 w~~l~~e~~~~lr~~ll~-----~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~-~Wp~~i~~l~~~~~~~ 144 (881)
+..|++|++..++.++.. -+.+.. +-. -+-||+++..++..+-...-+. .=+..-.++++.+..+
T Consensus 31 ~~~L~~E~~~Fi~~Fi~~rGnlKe~e~~l--------giS-YPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~G 101 (113)
T PF09862_consen 31 FARLSPEQLEFIKLFIKNRGNLKEMEKEL--------GIS-YPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKG 101 (113)
T ss_pred hhcCCHHHHHHHHHHHHhcCCHHHHHHHH--------CCC-cHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcC
Confidence 457999999999998863 222332 111 4679999999999887632222 3345666677776665
Q ss_pred chhHHHHHHHH
Q 002789 145 SMVIDMFCRVL 155 (881)
Q Consensus 145 ~~~~~~~L~iL 155 (881)
.-..+-++++|
T Consensus 102 eIs~eeA~~~L 112 (113)
T PF09862_consen 102 EISVEEALEIL 112 (113)
T ss_pred CCCHHHHHHHh
Confidence 54444444443
No 161
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=25.40 E-value=99 Score=21.35 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=25.6
Q ss_pred ccccHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 002789 232 NDAFIPLLFELILADGLPEQFRGAAVGCVLAVV 264 (881)
Q Consensus 232 ~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii 264 (881)
+...++.+.++|. .++++++..|+-+|..+.
T Consensus 10 ~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 4567888999998 568999999999988764
No 162
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=24.87 E-value=2.2e+02 Score=26.08 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=31.7
Q ss_pred HhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch
Q 002789 520 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (881)
Q Consensus 520 l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~ 567 (881)
+...+.--..++.++- ..+.++++.|+.+|..++-.++++|+..+.
T Consensus 28 i~~~~~~~k~a~r~l~--krl~~~n~~v~l~AL~lLe~~vkNcg~~f~ 73 (133)
T smart00288 28 INSTPDGPKDAVRLLK--KRLNNKNPHVALLALTLLDACVKNCGSKFH 73 (133)
T ss_pred HhCCCccHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3333333333344443 346678999999999999999999988663
No 163
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=24.56 E-value=4.4e+02 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=21.9
Q ss_pred CCCCCchhhhHHHHHHHHHHHHhhhcc
Q 002789 540 IHHPNVHVSRRASYLFMRVVKLLKAKL 566 (881)
Q Consensus 540 l~~~~~~v~~~A~~~f~~~~~~~~~~l 566 (881)
+.|++++||..|+.++..+-+.++..+
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L 75 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFL 75 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHH
Confidence 567899999999999988887776544
No 164
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=24.53 E-value=1.8e+02 Score=24.80 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHhcccccccccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcC
Q 002789 206 SDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKR 267 (881)
Q Consensus 206 ~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~ 267 (881)
..+.++..+|..++..+.--+...+.-+.++.++...|. ++++-+...|+.++.+++...
T Consensus 15 p~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~--d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 15 PLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLK--DEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred CCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHHHC
Confidence 344567777777777664333111122457777778887 568889999999999998854
No 165
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=24.19 E-value=2.3e+02 Score=22.99 Aligned_cols=20 Identities=0% Similarity=-0.242 Sum_probs=15.6
Q ss_pred CCCChhHHHHHHHHHHHhHH
Q 002789 499 CHSNRLVALVYLETVTRYMK 518 (881)
Q Consensus 499 ~~~~p~v~~~~~~~igry~~ 518 (881)
..+...||-++|+++|-.++
T Consensus 39 ~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 39 NSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred hCCccchHHHHHHHHHHHhC
Confidence 45777889999999887654
No 166
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.02 E-value=6e+02 Score=28.12 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=50.3
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccC---ChhHHHHHHHHHHHHHHHhhccCC
Q 002789 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC---NIVQVQFWCLQTLSEVVRVKYTSM 74 (881)
Q Consensus 4 l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~---~~~~vrffa~~~L~~~I~~~w~~l 74 (881)
++-=+.-+-||+ .+.++.+..+-|++++-+.|++-.++..+|.+. ..+.--..|+.+|+..+++.-...
T Consensus 9 le~wlnrATdp~--~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekf 80 (594)
T KOG1086|consen 9 LEYWLNRATDPS--NDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKF 80 (594)
T ss_pred HHHHHHhccCcc--chHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHH
Confidence 455566677885 455666667889999999999998888888742 335566778888888888754433
No 167
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=23.78 E-value=7.2e+02 Score=24.60 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhHhhHHHHHHHHHHHhhCcc
Q 002789 685 GLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS 726 (881)
Q Consensus 685 ~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~v~~lg~~ 726 (881)
.+.+.++++.+...-.. .+...|+.+..++...++.+|++
T Consensus 36 ~~~l~~~L~~l~~lr~~--~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 36 SPLLKPILKTLGDLRES--EDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred cHHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHHHCCHH
Confidence 34555555555443321 22456778888899999999975
No 168
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.31 E-value=4.8e+02 Score=28.50 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHhc-----ChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhc-cchHHHHHHHHHHhCCC
Q 002789 424 LLRSVGRV-----APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT-GAGHLSELVPMLLQTKL 497 (881)
Q Consensus 424 ~l~~i~~~-----~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~-~~~~l~~ll~~l~~~~~ 497 (881)
+|+.|-.+ ++.+++..|+..+.+ .+-+.+=-||.++.++.+.|....... ....|...+..|+.
T Consensus 29 IlDvCD~v~~~~~~~kd~lk~i~KRln~-------~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~--- 98 (462)
T KOG2199|consen 29 ILDVCDKVGSDPDGGKDCLKAIMKRLNH-------KDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIE--- 98 (462)
T ss_pred HHHHHHhhcCCCcccHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHh---
Q ss_pred CCCCChhHHHHHHHHHHHhHHHHhhcCCC
Q 002789 498 PCHSNRLVALVYLETVTRYMKFIQEHTQY 526 (881)
Q Consensus 498 ~~~~~p~v~~~~~~~igry~~~l~~~~~~ 526 (881)
+..||.|+...=.++...++-|+..|++
T Consensus 99 -~~~h~kV~~k~~~lv~eWsee~K~Dp~l 126 (462)
T KOG2199|consen 99 -SKAHPKVCEKMRDLVKEWSEEFKKDPSL 126 (462)
T ss_pred -hcccHHHHHHHHHHHHHHHHHhccCcch
No 169
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.60 E-value=9.4e+02 Score=28.45 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhh
Q 002789 456 VEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFL 535 (881)
Q Consensus 456 w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l 535 (881)
...++||...++.++-.-+.-. ...+.-++..+ +++-..||...++.+--.+..+.-+.+.++.++..
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMf------NDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~-- 454 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFA----VRALDFLVDMF------NDEIEVVRLKAIFALTMISVHLAIREEQLRQILES-- 454 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHH--
Q ss_pred cccCCCCCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCcccccCCCccchhHHHHHHHHHhccCC
Q 002789 536 DERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED 615 (881)
Q Consensus 536 ~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~ 615 (881)
+.+.++.||. ++..+-+.|+-.=..-++-.+..+-..+..+ +.++-.+|-+++.+-++.+
T Consensus 455 ----L~D~s~dvRe----~l~elL~~~~~~d~~~i~m~v~~lL~~L~ky------------PqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 455 ----LEDRSVDVRE----ALRELLKNARVSDLECIDMCVAHLLKNLGKY------------PQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred ----HHhcCHHHHH----HHHHHHHhcCCCcHHHHHHHHHHHHHHhhhC------------CCCcHHHHHHHHHHhccCh
Q ss_pred CCccchHHHHHHhhH
Q 002789 616 VPPEKQSDYLSSLLT 630 (881)
Q Consensus 616 ~~~~~~~~~l~~ll~ 630 (881)
..-...+..++.
T Consensus 515 ---~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 515 ---RLVLSNMGRFLE 526 (823)
T ss_pred ---hhHHHHHHHHHH
No 170
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.53 E-value=2.7e+02 Score=25.88 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch
Q 002789 529 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (881)
Q Consensus 529 ~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~ 567 (881)
.++.++- +.+.+++++|+-+|..++-.++++|+..+-
T Consensus 41 ~a~ral~--krl~~~n~~vql~AL~LLe~~vkNCG~~fh 77 (142)
T cd03569 41 YAMRALK--KRLLSKNPNVQLYALLLLESCVKNCGTHFH 77 (142)
T ss_pred HHHHHHH--HHHcCCChHHHHHHHHHHHHHHHHCCHHHH
Confidence 3344443 346678999999999999999999988663
No 171
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.22 E-value=1.4e+03 Score=27.56 Aligned_cols=231 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHhc-CcchHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccCCCHHHHHHHH
Q 002789 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKE-TPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIR 83 (881)
Q Consensus 5 ~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~lr 83 (881)
..+++.+.+. +.+..|-.|...|+++-. +|++...|..=|++--++.=|+-|--.+...+++ =.++....+.
T Consensus 284 vs~Lq~flss---p~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm 356 (865)
T KOG1078|consen 284 VSVLQLFLSS---PKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKT----GTESSVDRLM 356 (865)
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHH
Q ss_pred HHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q 002789 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELI 163 (881)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eEv~ 163 (881)
+.+-..+... ..+ -+.+ ..+++..+-.+ ||..|...++.+.+.+.. ..+.+.-=.+...+..-+.
T Consensus 357 ~qI~~fv~di---------sDe-FKiv---vvdai~sLc~~-fp~k~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie 421 (865)
T KOG1078|consen 357 KQISSFVSDI---------SDE-FKIV---VVDAIRSLCLK-FPRKHTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIE 421 (865)
T ss_pred HHHHHHHHhc---------ccc-ceEE---eHHHHHHHHhh-ccHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHH
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---------------hccC---CHHHHHHHHHHhccccccc
Q 002789 164 SLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSM---------------YRSS---DFEVCTGVLDCMRRYISWI 225 (881)
Q Consensus 164 ~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~---------------~~~~---~~~l~~~~L~~l~~~i~wi 225 (881)
+. ......+-..+=+.+...-...+....+++|-. |+.. +..+...++.++..+-
T Consensus 422 ~~----pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--- 494 (865)
T KOG1078|consen 422 EN----PDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--- 494 (865)
T ss_pred hC----cchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh---
Q ss_pred ccccccccccHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 002789 226 DINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (881)
Q Consensus 226 ~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~ 266 (881)
--....-+.+..++-.++. +.+.++|+.|.-.+..+-++
T Consensus 495 ~~~~~l~~sI~vllkRc~~--D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 495 AQDVVLLPSILVLLKRCLN--DSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred cCCCCccccHHHHHHHHhc--CchHHHHHHHHHHHHHhhhh
No 172
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.93 E-value=2.3e+02 Score=25.02 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=33.4
Q ss_pred cCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcchhh
Q 002789 523 HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 569 (881)
Q Consensus 523 ~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~p~ 569 (881)
.++....++..+. ..+.+++++++-.|-+++..+++.|++.+..+
T Consensus 31 ~~~~~~~~~~~l~--kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~ 75 (115)
T cd00197 31 TNVGPKEAVDAIK--KRINNKNPHVVLKALTLLEYCVKNCGERFHQE 75 (115)
T ss_pred CCccHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 3444555555554 33677899999999999999999999866543
No 173
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=21.72 E-value=1.2e+02 Score=26.36 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.0
Q ss_pred hHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhh
Q 002789 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA 564 (881)
Q Consensus 527 L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~ 564 (881)
++.+|..- .+++.+|-+|..|..+++.+|+.+..
T Consensus 30 i~liL~~c----~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 30 IPLILSCC----NIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred hHHHHHhc----CCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 56666553 47889999999999999999998864
No 174
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.67 E-value=4.3e+02 Score=25.12 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhCccccccHHHHHHHHHccC
Q 002789 711 KVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (881)
Q Consensus 711 ~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~ 742 (881)
.+..++..+..++|..+.||+|.+++.++...
T Consensus 106 ~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 106 AVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred HHHHHHHHHHHhcCcCchhHHHHHhHHHHHHH
Confidence 45555566667899999999999999888754
No 175
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.63 E-value=6.5e+02 Score=23.32 Aligned_cols=108 Identities=13% Similarity=0.171 Sum_probs=65.4
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhc---cCChhHHHHHHHHHHHHHHHhhccCCCHHHH
Q 002789 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS---LCNIVQVQFWCLQTLSEVVRVKYTSMSSEER 79 (881)
Q Consensus 3 ~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~---~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~ 79 (881)
.+++.|.-+-++. -....-....+++..+..++.+-.-+...+. .+.++.+..+|+.+|+..+++.-..+-.
T Consensus 4 ~~~~~I~kATs~~--l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~--- 78 (142)
T cd03569 4 EFDELIEKATSEL--LGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHD--- 78 (142)
T ss_pred hHHHHHHHHcCcc--cCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHH---
Confidence 4667777777663 2333555667788888877766655555554 2367999999999999999975332211
Q ss_pred HHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHH
Q 002789 80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIY 123 (881)
Q Consensus 80 ~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~ 123 (881)
+.-....++-+.+... . .. +.-|++|+..++-.-..
T Consensus 79 evas~~fl~~l~~l~~----~--~~--~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 79 EVASREFMDELKDLIK----T--TK--NEEVRQKILELIQAWAL 114 (142)
T ss_pred HHhhHHHHHHHHHHHc----c--cC--CHHHHHHHHHHHHHHHH
Confidence 1112223333333321 0 11 66788888777665553
No 176
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.85 E-value=2.6e+02 Score=25.77 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=33.3
Q ss_pred HHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHhhhcch
Q 002789 518 KFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (881)
Q Consensus 518 ~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~~~~l~ 567 (881)
+.+...+..-..++..+- ..+.++++.++.+|..++-.++++|+..+-
T Consensus 31 D~i~~~~~~~kea~~~l~--krl~~~~~~vq~~aL~lld~lvkNcg~~f~ 78 (140)
T PF00790_consen 31 DLINSSPDGAKEAARALR--KRLKHGNPNVQLLALTLLDALVKNCGPRFH 78 (140)
T ss_dssp HHHHTSTTHHHHHHHHHH--HHHTTSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHcCCccHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444454443 336678999999999999999999987664
No 177
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.77 E-value=9.3e+02 Score=26.19 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHhhhcCcchhhhccchHHHHHHHHHHhCCCCCCCChhH-HHHHHHHHHH
Q 002789 437 QVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLV-ALVYLETVTR 515 (881)
Q Consensus 437 l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~p~v-~~~~~~~igr 515 (881)
++.....+.+++.+ .+=..+++||..+..=.. ....+|.++..+.+ ...+... -...+..+.|
T Consensus 176 lq~yf~~It~a~~~---~~~~~r~~aL~sL~tD~g---------l~~LlPyf~~fI~~----~v~~n~~~nl~~L~~lm~ 239 (343)
T cd08050 176 LQLYFEEITEALVG---SNEEKRREALQSLRTDPG---------LQQLLPYFVRFIAE----GVTVNLDQNLALLIYLMR 239 (343)
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHhccCCC---------chhhhhHHHHHHHH----HHHhhhcccHHHHHHHHH
Q ss_pred hHHHHhhcC---------CChHHHHHHhhcccCCC----CCCchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhh
Q 002789 516 YMKFIQEHT---------QYIPVVLAAFLDERGIH----HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA 582 (881)
Q Consensus 516 y~~~l~~~~---------~~L~~vL~~~l~~~gl~----~~~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~ 582 (881)
..+-+-.|| +++|.+|..+++..--. +.+-.+|+-|+..+..+|+.+...-...-+.|...+...+.
T Consensus 240 ~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 240 MVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Q ss_pred cccccCcccccCCCccchhHHHHHHHHH
Q 002789 583 RFTSMNYASKELSGSEDGSHIFEAIGLL 610 (881)
Q Consensus 583 ~~~~p~~~~~~~~~~~~~~~l~Eaig~l 610 (881)
.. .......|.|+.-+
T Consensus 320 d~------------~~~~~~~YGAi~GL 335 (343)
T cd08050 320 DP------------KKPLTTHYGAIVGL 335 (343)
T ss_pred CC------------CCCcchhhHHHHHH
No 178
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.57 E-value=2.9e+02 Score=25.24 Aligned_cols=29 Identities=28% Similarity=0.104 Sum_probs=25.2
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHhhhcch
Q 002789 539 GIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (881)
Q Consensus 539 gl~~~~~~v~~~A~~~f~~~~~~~~~~l~ 567 (881)
.+.++++.++.+|..++-.+++.|+..+.
T Consensus 45 rl~~~n~~vql~AL~lLd~~vkNcg~~f~ 73 (133)
T cd03561 45 KIKYGNPHVQLLALTLLELLVKNCGKPFH 73 (133)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCChHHH
Confidence 36678999999999999999999998663
No 179
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.38 E-value=1e+03 Score=25.09 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhccC---CcchhhhHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHHHHHh-hccCcccccccccCCC
Q 002789 331 LLNEVLPSVFYVMQNC---EVDTTFSIVQFLSGYVATMKSLSPL-KEEQRLHAGQILEVILTQ-IRYDPMYRNNLDVLDK 405 (881)
Q Consensus 331 ~l~~~l~~ll~~~~~~---~~~v~~~~~~~~~~~w~~l~~~~~l-~~~~~~~l~~Ll~~l~~k-m~~p~~~~~~~~~~~~ 405 (881)
-+++++|+...+++.. +...-+....+...||+.++...-+ .+-.+..++.++.+++.| +--.++
T Consensus 227 GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~---------- 296 (450)
T COG5095 227 GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPD---------- 296 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCc----------
Confidence 3678999998888643 1111112233455678777654222 223356677777777663 321111
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 002789 406 IGIEEEDRMVEYRKDLLVLLRSVGRVAPEV 435 (881)
Q Consensus 406 ~~eed~~~f~~~R~~~~~~l~~i~~~~~~~ 435 (881)
| -+|...|.-.++++++++...+..
T Consensus 297 ----d-he~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 297 ----D-HEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred ----c-hhHHHHHHHHHHHHHHHHhhhhHh
Confidence 1 256778988899999988666553
No 180
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.03 E-value=8.2e+02 Score=23.83 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCCCchhhhHHHHHHHHHHHHh
Q 002789 483 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (881)
Q Consensus 483 ~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~A~~~f~~~~~~~ 562 (881)
.+++.++...+ .++..|+...+++++.--+.=--||..--|.|-++ ..++++.+|.+|-..+..+.++.
T Consensus 8 ryl~~Il~~~~------~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL-----~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCL------SSDDSVRLAALQVLELILRQGLVNPKQCVPTLIAL-----ETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHh------CCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhh-----hCCCChHHHHHHHHHHHHHHHHh
Confidence 45666666433 45667777776666654432223776544444344 45689999999999999999999
Q ss_pred hhcch-hhHHHHHHHhh
Q 002789 563 KAKLV-PFIENILQSLQ 578 (881)
Q Consensus 563 ~~~l~-p~~~~il~~l~ 578 (881)
..-+. .|.+.+-..+.
T Consensus 77 ~s~v~~~~~~gi~~af~ 93 (187)
T PF12830_consen 77 ESLVESRYSEGIRLAFD 93 (187)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87764 45555555443
Done!