Query 002789
Match_columns 881
No_of_seqs 222 out of 1405
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 18:16:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002789.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1502-1505//hhsearch_pdb/002789hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 1.0 1 1 995.3 82.5 833 2-873 6-874 (980)
2 4hat_C Exportin-1; heat repeat 1.0 1 1 736.2 72.3 796 2-872 16-881 (1023)
3 3gjx_A Exportin-1; transport, 1.0 1 1 735.7 60.1 792 2-869 28-904 (1073)
4 3m1i_C Exportin-1; heat repeat 1.0 1 1 669.2 68.0 796 2-873 16-882 (1049)
5 2x1g_F Cadmus; transport prote 1.0 1 1 654.5 68.4 797 2-870 7-859 (971)
6 2x19_B Importin-13; nuclear tr 1.0 1 1 644.7 69.9 782 2-871 24-848 (963)
7 3a6p_A Exportin-5; exportin-5, 1.0 1 1 560.3 62.0 600 2-638 11-682 (1204)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 377.5 59.5 716 2-874 13-790 (852)
9 1wa5_C Importin alpha RE-expor 1.0 1 1 349.4 59.5 544 1-640 1-607 (960)
10 2bpt_A Importin beta-1 subunit 1.0 1 1 339.0 61.0 730 3-868 5-810 (861)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=995.34 Aligned_cols=833 Identities=25% Similarity=0.402 Sum_probs=730.6
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCCHH--
Q ss_conf 26999999940699999988899999999999619665999999842388--15899999999999997340689988--
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCN--IVQVQFWCLQTLSEVVRVKYTSMSSE-- 77 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~~--~~~vrffa~~~L~~~I~~~w~~l~~e-- 77 (881)
+++++||+++|+|+ +|++.|++|++||++||++|++|++|..+|.++. ++++||||+++|+++|+ .++++
T Consensus 6 ~~v~~Al~~~~~p~--sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~ 79 (980)
T 3ibv_A 6 QDVENAVEAALDPS--VGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH----HCCHHHH
T ss_conf 99999999984899--99999999999999987394599999999837999989999999999999987----5882010
Q ss_pred --HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-C-HHHHHHHH
Q ss_conf --8999999999999853306888767788908999999999999998446888803499999720189-5-05899999
Q 002789 78 --ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-S-MVIDMFCR 153 (881)
Q Consensus 78 --~~~~lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~-~-~~~~~~L~ 153 (881)
++..||+++++++.+.. . ..+ +++||||+|++++.+++++||+.||+|+++++++++.+ . ...+.+|+
T Consensus 80 ~~~~~~lr~~ll~~l~~~~-----~--~~~-~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~Lr 151 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELS-----F--LDE-PAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLK 151 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----S--TTS-CTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8899999999999999705-----7--778-6799999999999999986854475399999998568972689999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999999863167899812799999999999888699999999999983102-998899999987400423321300026
Q 002789 154 VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRS-SDFEVCTGVLDCMRRYISWIDINLIAN 232 (881)
Q Consensus 154 iL~~l~eEi~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~-~~~~l~~~~L~~l~~~i~wi~~~~~~~ 232 (881)
+|..|+||+++....|+.+...|++.+|+.|+++|++.|++.|+.+|..+.. .++++...+|+|+++|++|++++++++
T Consensus 152 iL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~ 231 (980)
T 3ibv_A 152 VLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN 231 (980)
T ss_dssp HHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 99985899972323667887766599999998662889999999999987412889999999999999986527786503
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 24099999998607998457789999999999539991446989987101110034578-75179999999999999999
Q 002789 233 DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSE-DGESELVSKVAALLTGYAME 311 (881)
Q Consensus 233 ~~~l~~l~~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li~~l~l~~i~~~~~~-~~d~~~~~~la~l~~~~~~~ 311 (881)
+++++.++++|. ++++|.+|++|+++|++++|+|++|.+++..+++.+++..+.. ++|.|+.+++|++++++|++
T Consensus 232 ~~ll~~l~~~L~----~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 232 EPCMNLLYSFLQ----IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HHHHHHHHHHTT----SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 018999999828----8677999999999999737895668999999757999998744555689999999999999999
Q ss_pred HHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHH
Q ss_conf 9999853023----44159999999978989886503587642565989899999983158---9894788999999999
Q 002789 312 VLDCVKRLNA----ENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL---SPLKEEQRLHAGQILE 384 (881)
Q Consensus 312 l~~~~~~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~~---~~l~~~~~~~~~~Ll~ 384 (881)
++.. .. .+ .+.+.++...+..+++++|.+++|++++++..+++||..|...+++. .++.+.+++++.+|+.
T Consensus 308 l~~~-~~-~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~ 385 (980)
T 3ibv_A 308 LVAI-KS-DPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLE 385 (980)
T ss_dssp HHHH-HT-SCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHH-CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9987-35-865555255666899999999999999679806399999999999999987244223433789999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 999864359545456666787884789999999999999999999309266999----9999999950346889811398
Q 002789 385 VILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQV----FIRNSLANAVTFSADRNVEEVE 460 (881)
Q Consensus 385 ~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~----~i~~~l~~~l~~~~~~~w~~~E 460 (881)
++++||+||++++ |.+++++||+++|.+||++++.+++.++.++|+.+++ .+.+.+.+.+.+.++.+|+++|
T Consensus 386 ~li~k~~yp~d~~----~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~E 461 (980)
T 3ibv_A 386 AIIKKMKYDESQE----WDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIE 461 (980)
T ss_dssp HHHHTTSCCTTCC----CCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9998722898656----666655547999999999999999999964849888889999999999871555899879999
Q ss_pred HHHHHHHHHHHCCCCHHHH-----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999999961118603532-----10028999999987099999897258999999999759888555887499999964
Q 002789 461 AALTLLYALGESMSEEAMR-----TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFL 535 (881)
Q Consensus 461 aal~~l~~i~e~~~~~~~~-----~~~~~l~~ll~~l~~~~~~~~~~~~V~~~~~~~i~ry~~~l~~~~~~L~~vL~~~l 535 (881)
|+||+++++||+++..... .....+.+++..+++++++.++||.|+.++|+++|||++|+..||++++++|..|+
T Consensus 462 aaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll 541 (980)
T 3ibv_A 462 FALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFV 541 (980)
T ss_dssp HHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999876534312366755210689999999998478888997899999999999999998519354999999982
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCC----------CCCCCCCHHHHHH
Q ss_conf 026888998012467999999999984320004699999984631202355674433----------5799520457999
Q 002789 536 DERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASK----------ELSGSEDGSHIFE 605 (881)
Q Consensus 536 ~~~gl~~~~~~v~~~a~~~l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~----------~~~~~~~~~~l~E 605 (881)
+++|+++++++|+.||||+|.+||+.|++++.||++.|++++++++.+..+|.++.. ..-.+++++++||
T Consensus 542 ~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~e 621 (980)
T 3ibv_A 542 GPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFE 621 (980)
T ss_dssp STTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH
T ss_conf 60026699765999999999999998668744589999999998616867888753222210454203677147889999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 88787516899953068999986677999999999764205990235689999899999977310568998778866189
Q 002789 606 AIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIG 685 (881)
Q Consensus 606 aig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~i~k~f~~~~~~~~~~~~~ 685 (881)
|+|.+++..+.|++++..+++.+++|++++|+++++...... +. . .+++|.++++++++|||++.. .+.+++.
T Consensus 622 aig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~--~~-~--~~i~~~i~al~~lakgf~~~~--~~~~p~~ 694 (980)
T 3ibv_A 622 TVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL--EN-I--ISVYCSLMAIGNFAKGFPARG--SEEVAWL 694 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC----CH-H--HHHHHHHHHHHHHHHTSCSCC---CCCSHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CH-H--HHHHHHHHHHHHHHCCCCCCC--CCCCCHH
T ss_conf 999999278998789999999999999999999886413586--38-8--899999999999731678646--8888189
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999983229987468557999999989810702124479999999705994569999999999999822005
Q 002789 686 LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLV 765 (881)
Q Consensus 686 ~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~i~~l~~~~~p~lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~ 765 (881)
.+|.+++++++.+++.|+++..||+++|++|+||+.|+|.++.|++|++++.++..++..++.+||++++|+|++||.++
T Consensus 695 ~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~ 774 (980)
T 3ibv_A 695 ASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNM 774 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998826786789999999999999975576798789999999836987999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98765558999999973056888889999999889889999999999999999558961102677737869999999985
Q 002789 766 HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYT 845 (881)
Q Consensus 766 ~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~ 845 (881)
.+.+++++.|++.++|+++.+.. .++|..|++.+++|+||+|++++++++++++|+|++|++.++.++.++++|
T Consensus 775 ~~~l~~ll~~l~~~if~~l~~~~------~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~ 848 (980)
T 3ibv_A 775 MEITNRMLPTLLMRIFSSLSAAP------QGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHF 848 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----------CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999889999999999716898------994799999999999999999998378604521776567899999999998
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1379982101276677789887333477
Q 002789 846 SCNHKDYLVRKVCYFLGFFSTLHLGFSI 873 (881)
Q Consensus 846 ~~~~~d~~~~k~~~~~~~~~~~~~~~~~ 873 (881)
+.+++|++++|+|+ +++++++.-|.|
T Consensus 849 a~~~~d~~~~K~a~--~~l~~~v~~~~~ 874 (980)
T 3ibv_A 849 ANLVGEPATQKSSI--ALVSKMVSLWGG 874 (980)
T ss_dssp C-----CHHHHHHH--HHHHHHHHC---
T ss_pred HCCCCCHHHHHHHH--HHHHHHHHHHCC
T ss_conf 26678748998999--999999999779
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=736.24 Aligned_cols=796 Identities=17% Similarity=0.243 Sum_probs=628.9
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 26999999940699999988899999999999619665999999842388158999999999999973406899888999
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+++++||..+|+| +++.|++|+++|+++|++|++|..|..+|.++.++++||||+++|+++|+++|..++++++..
T Consensus 16 ~~Le~av~~ly~p----~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 16 ALLDQVVSTFYQG----SGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999998499----959999999999998719548889999953899889999999999999976111299999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999985330688876778890899999999999999844688880349999972018950589999999999998
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDE 161 (881)
Q Consensus 82 lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eE 161 (881)
||+.+++++.+...++. . ... +++++||+|++++.+++++||+.||+++++++++++.++.+++++|++|+.|+||
T Consensus 92 Ir~~Ll~~l~~~~~~~~-~--i~~-~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EE 167 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDE-V--FKT-QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEE 167 (1023)
T ss_dssp HHHHHHHHHHHHHHSHH-H--HHH-CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC-C--CCC-CHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999998657852-2--223-1999999999999999985733232899999998569977899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-
Q ss_conf 6316789981279999999999988869999999999998310299889999998740042332130002624099999-
Q 002789 162 LISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF- 240 (881)
Q Consensus 162 i~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~- 240 (881)
+++. .+...+.+|+..+|++|+++ ++.|+++|.++|+. +.++++...+|+|+++|++|+++++++++++++.++
T Consensus 168 V~~~--~~~~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~--~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~ 242 (1023)
T 4hat_C 168 VFDF--SAEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQ--GASSSLIVATLESLLRYLHWIPYRYIYETNILELLST 242 (1023)
T ss_dssp HHTS--CTTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT
T ss_pred HHHH--HHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
T ss_conf 9871--00001599988899999998-99999999999827--8988999999999999998489987514449999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCC-CHH--HHHHH---HH-HHH-H-HHHCCC-------C--CCCCCHHHHHHHH
Q ss_conf 9986079984577899999999995399-914--46989---98-710-1-110034-------5--7875179999999
Q 002789 241 ELILADGLPEQFRGAAVGCVLAVVSKRM-DPQ--SKLNL---LQ-TLQ-I-SRVFGL-------V--SEDGESELVSKVA 302 (881)
Q Consensus 241 ~~L~~~~~~~~~~~~a~~~l~eii~~~~-~~~--~k~~l---i~-~l~-l-~~i~~~-------~--~~~~d~~~~~~la 302 (881)
+++. ++.+|.+|++|+++|+++.+ .+. ....+ +. .++ + ..+++. + .+++|.++.+++|
T Consensus 243 ~~L~----~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~ 318 (1023)
T 4hat_C 243 KFMT----SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLA 318 (1023)
T ss_dssp HHHH----SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHH
T ss_pred HHCC----CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 8769----878899999999999804257855778899999999999999997379741289998626631199999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC----CCCCHHHHHH
Q ss_conf 999999999999985302344159999999978989886503587642565989899999983158----9894788999
Q 002789 303 ALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL----SPLKEEQRLH 378 (881)
Q Consensus 303 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~~----~~l~~~~~~~ 378 (881)
++++++|..+.. .++..+. ....+...+.+++.+..+++. ++++.+++||+.+++. +.....++++
T Consensus 319 ~l~~~~~e~~~~---li~~~~~---~~~~l~~~l~~Ll~~~~~~d~----ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~ 388 (1023)
T 4hat_C 319 MFLTTYLARNRA---LLESDES---LRELLLNAHQYLIQLSKIEER----ELFKTTLDYWHNLVADLFYEPLKKHIYEEI 388 (1023)
T ss_dssp HHHHHHHHHHGG---GGTSCGG---GHHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHTTSTTTGGGGHHH
T ss_pred HHHHHHHHHHHH---HHHCCCC---HHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 999999999999---9867910---358999999999986189928----899999999999999998565788889999
Q ss_pred HHHHHHHHHHHHCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999998643595454------5666678788478999999999999999999930926699999999999503468
Q 002789 379 AGQILEVILTQIRYDPMYR------NNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSA 452 (881)
Q Consensus 379 ~~~Ll~~l~~km~~p~~~~------~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~ 452 (881)
+.+|+.++++||+||++.. +.+......+.|+.+.|+.+| ++|.+++.+.++++++++.+.+.+.+.+ +
T Consensus 389 ~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~-~ 463 (1023)
T 4hat_C 389 CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDG-S 463 (1023)
T ss_dssp HHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSS-T
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHCC-C
T ss_conf 9999999998657982026677888608887144558899999999----9999986068789999999999998548-8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHC--CCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 8981139899999999611186035321002899999998709--9999-897258999999999759888555887499
Q 002789 453 DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT--KLPC-HSNRLVALVYLETVTRYMKFIQEHTQYIPV 529 (881)
Q Consensus 453 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~--~~~~-~~~~~V~~~~~~~i~ry~~~l~~~~~~L~~ 529 (881)
+.+|+.+||++++++++++++.++. ...+++++++.|++- ...+ ++.+.|+.+.++++|||++|+..||++|++
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~---e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~ 540 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDT---EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT 540 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 7888999899999999976898155---7888999999999754103467625999999999999999998616798999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 9999640268889980124679999999999843200--------04699999984631202355674433579952045
Q 002789 530 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--------VPFIENILQSLQDTIARFTSMNYASKELSGSEDGS 601 (881)
Q Consensus 530 vL~~~l~~~gl~~~~~~v~~~a~~~l~~l~~~~~~~l--------~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~ 601 (881)
++..++ .|+++++++|+.+||.+|.+||++|+..+ .||+++|++.+..++... ..++..
T Consensus 541 vl~~L~--~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-----------~~~~~~ 607 (1023)
T 4hat_C 541 VILKLF--EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-----------QPQQVH 607 (1023)
T ss_dssp HHHHHH--HHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-----------CHHHHH
T ss_pred HHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC-----------CHHHHH
T ss_conf 999999--9861698789999999999999998887613577778606999999999998847-----------988899
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH-HHHHHHHHHHHHCCCCCCC
Q ss_conf 799988787516899953068999986677999999999764205----99023568999-9899999977310568998
Q 002789 602 HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKML----NPEESTAKFAN-IQQIIMAINALSKGFNERL 676 (881)
Q Consensus 602 ~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~----~~~e~~~~~~~-l~~~~~~~~~i~k~f~~~~ 676 (881)
.+|||+|.+|++.+ +.+.+.++++.+|+|+.+.|++..++.... .|++..+.+.. +.++..+++++|.+|.++.
T Consensus 608 ~lyeai~~vi~~~~-~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~ 686 (1023)
T 4hat_C 608 TFYKACGIIISEER-SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL 686 (1023)
T ss_dssp HHHHHHHHHHTTCC-SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 99999999998588-77448999999988589999999998722725412878899999999999999998268899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-----------CCCCCHHHHH--HHHHHHHHHHHH-HC------CCCCCCHHHHHH
Q ss_conf 778866189999999999999832-----------2998746855--799999998981-07------021244799999
Q 002789 677 VTSSRPAIGLMFKQTLDVLLQILV-----------VFPKVEPLRC--KVTSFIHRMVDT-LG------ASVFPYLPKALE 736 (881)
Q Consensus 677 ~~~~~~~~~~if~~~~~~~~~~l~-----------~~~~~~~ir~--~~~~~~~~~i~~-l~------~~~~p~lp~~~~ 736 (881)
..+|.+++++|...-+ ...+...+|. .++..+-+++.+ .+ .....++|++++
T Consensus 687 --------~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~ 758 (1023)
T 4hat_C 687 --------GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLN 758 (1023)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf --------999999999999999999999984794253168888889999999999999996279889999986788999
Q ss_pred HHHCCCC-----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9970599-----45699999999999998220059876555899999997305688888999999988988999999999
Q 002789 737 QLLAESE-----PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLY 811 (881)
Q Consensus 737 ~ll~~~~-----~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~ 811 (881)
.++.+|. .++ +++|++.+.+|.++|..+.+.+..++..+++.|++|++.++ . ++||+|.+||
T Consensus 759 ~vl~dY~~~~~~~r~-~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~---~---------~~Pe~r~~ff 825 (1023)
T 4hat_C 759 AVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDF---T---------EYPEHRVEFY 825 (1023)
T ss_dssp HHHHHHHHSCGGGCC-HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCS---S---------SSHHHHHHHH
T ss_pred HHHHHHHHCCHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C---------CCHHHHHHHH
T ss_conf 999888728720103-88999999999988774101568999999999999985562---2---------2949899999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999558961102677737869999999985137998210127667778988733347
Q 002789 812 TFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFS 872 (881)
Q Consensus 812 ~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~ 872 (881)
+|+.+++++||..+|..+.+ .+..++++++ ++..|++..+..++. .|+.+++--..
T Consensus 826 ~ll~~~~~~~f~~~~~~~~~--~~~~~~~~~~-~a~~h~~r~~~~~~l--~~~~~ll~~~~ 881 (1023)
T 4hat_C 826 KLLKVINEKSFAAFLELPPA--AFKLFVDAIC-WAFKHNNRDVEVNGL--QIALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHHCTHHHHTSCHH--HHHHHHHHHH-HHHTCCCHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHCCCHH--HHHHHHHHHH-HHCCCCCHHHHHHHH--HHHHHHHHHHH
T ss_conf 99999999776999749999--9999999999-980899558999999--99999999877
No 3
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=735.70 Aligned_cols=792 Identities=16% Similarity=0.280 Sum_probs=627.8
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 26999999940699999988899999999999619665999999842388158999999999999973406899888999
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+.++++|..+|+| +++.|++|+++|+++|++|++|..|..+|..++++++||||+++|+++|+++|..++++++..
T Consensus 28 ~~Le~lv~~ly~p----~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 28 NLLDNVVNCLYHG----EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp HHHHHHHHTTTCS----SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999998299----999999999999998729058999999946899899999999999999976466299999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999985330688876778890899999999999999844688880349999972018950589999999999998
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDE 161 (881)
Q Consensus 82 lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eE 161 (881)
||+++++++.+.+.++... .+ ++.++||+|++++.+++++||+.||+++++++++++.++.+++++|++|..|+||
T Consensus 104 LR~~Ll~~l~~~~~~~~~~--e~--~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EE 179 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCV--EK--EKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEE 179 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGG--TS--CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCC--CC--CHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999872685323--33--4689999999999999986833160899999998379988999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH-H
Q ss_conf 631678998127999999999998886999999999999831029988999999874004233213000262409999-9
Q 002789 162 LISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL-F 240 (881)
Q Consensus 162 i~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l-~ 240 (881)
|++.. +...++.|++++|+.|+++ ++.|+++|..+|+. ..++++...+|+|+++|++|+++++++++++++.+ +
T Consensus 180 V~d~~--~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~--~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~ 254 (1073)
T 3gjx_A 180 VFDFS--SGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMEN--SQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIY 254 (1073)
T ss_dssp HTTSH--HHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHH
T ss_pred HHHCC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHH
T ss_conf 98514--3423088999999999999-99999999987555--6887999999999999998658987605428999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCH-HHHH-HHHH-HHH-HHHHCCC---------CCCCCCHHHHHHHHHHHHH
Q ss_conf 998607998457789999999999539991-4469-8998-710-1110034---------5787517999999999999
Q 002789 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDP-QSKL-NLLQ-TLQ-ISRVFGL---------VSEDGESELVSKVAALLTG 307 (881)
Q Consensus 241 ~~L~~~~~~~~~~~~a~~~l~eii~~~~~~-~~k~-~li~-~l~-l~~i~~~---------~~~~~d~~~~~~la~l~~~ 307 (881)
.+|+ ++.+|.+|++||++|++++.+. .++. .+++ .++ +..+++. ..+++|.++..++|+++++
T Consensus 255 ~~L~----~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~ 330 (1073)
T 3gjx_A 255 KFLN----VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCT 330 (1073)
T ss_dssp HTSS----SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHH
T ss_pred HHCC----CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 8669----867899999999999964152068999999999999998865882027888744655149999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC----C-------C------
Q ss_conf 9999999985302344159999999978989886503587642565989899999983158----9-------8------
Q 002789 308 YAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL----S-------P------ 370 (881)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~~----~-------~------ 370 (881)
+|..++... +..+. ....+...+.+++.+..+++. ++++.|++||+.++.. . +
T Consensus 331 ~~e~~~~lI---e~~p~---~~~~l~~~l~~ll~~s~~~d~----ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~ 400 (1073)
T 3gjx_A 331 FLKEHGQLL---EKRLN---LREALMEALHYMLLVSEVEET----EIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQ 400 (1073)
T ss_dssp HHHHHHHHH---HHCGG---GHHHHHHHHHHHHHHTTCSCH----HHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSC
T ss_pred HHHHHHHHH---HCCCC---CHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 999999998---35854---247999999999998389919----99999999999999999861423334451002221
Q ss_pred ---CCHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH---H---HHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf ---9478---8999999999999864359545456666787884---7---89999999999999999999309266999
Q 002789 371 ---LKEE---QRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGI---E---EEDRMVEYRKDLLVLLRSVGRVAPEVTQV 438 (881)
Q Consensus 371 ---l~~~---~~~~~~~Ll~~l~~km~~p~~~~~~~~~~~~~~e---e---d~~~f~~~R~~~~~~l~~i~~~~~~~~l~ 438 (881)
.... +++++.+|+.+++.||.||+|.. ++.+|.|| | |. +-.+.++.+++++.++++++++.++.
T Consensus 401 ~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~---i~e~e~ge~~re~~~d~-~~~~ly~~mrd~L~~lt~l~~~~~~~ 476 (1073)
T 3gjx_A 401 HFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVL---VVENDQGEVVREFMKDT-DSINLYKNMRETLVYLTHLDYVDTEI 476 (1073)
T ss_dssp CSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEE---EEECSSSCEEEEECSSC-HHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 001033899999999999999998259994235---46765126899988613-21899999999999870488899999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHH--CCCCCCCCHH-HHHHHHHHHHH
Q ss_conf 99999999503468898113989999999961118603532100289999999870--9999989725-89999999997
Q 002789 439 FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQ--TKLPCHSNRL-VALVYLETVTR 515 (881)
Q Consensus 439 ~i~~~l~~~l~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~--~~~~~~~~~~-V~~~~~~~i~r 515 (881)
.+.+.+.+.+++ +..+|+.+||+++++++++.++.++. +..+++++++.|++ ....+..+++ |+.+.|+++||
T Consensus 477 i~~~~l~~~~~~-~~~sW~~lea~~~aigaIag~~~~~~---E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgr 552 (1073)
T 3gjx_A 477 IMTKKLQNQVNG-TEWSWKNLNTLCWAIGSISGAMHEED---EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQ 552 (1073)
T ss_dssp HHHHHHHHHHTS-CCCCHHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998467-88887888399999999877278621---00229999999863414444341269999999999950
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 598885558874999999640268889980124679999999999843200--------046999999846312023556
Q 002789 516 YMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--------VPFIENILQSLQDTIARFTSM 587 (881)
Q Consensus 516 y~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~a~~~l~~l~~~~~~~l--------~p~~~~il~~l~~~l~~~~~p 587 (881)
|++|+..||++|++++..++ .+|++++++|+++||.+|.+||++|+.++ .||+++|++.+..+....
T Consensus 553 Y~~wl~~h~~~L~~vl~~L~--~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l--- 627 (1073)
T 3gjx_A 553 YPRFLRAHWKFLKTVVNKLF--EFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL--- 627 (1073)
T ss_dssp CHHHHHHCHHHHHHHHHHHH--HHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC---
T ss_pred HHHHHHHCHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC---
T ss_conf 07999867799999999999--9984498789999999999999999898752355545359999999999999746---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH-HHHHH
Q ss_conf 74433579952045799988787516899953068999986677999999999764205----99023568999-98999
Q 002789 588 NYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKML----NPEESTAKFAN-IQQII 662 (881)
Q Consensus 588 ~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~----~~~e~~~~~~~-l~~~~ 662 (881)
..++...+|||+|+++++.+ ++..+..+++.+|+|++++|++.+++.... .|++..+.+.. +++..
T Consensus 628 --------~~~~~~~lyeav~~vi~~~p-~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~ 698 (1073)
T 3gjx_A 628 --------QPQQVHTFYEAVGYMIGAQT-DQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNV 698 (1073)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHH
T ss_conf --------99999999999999998599-720299999999889999999999986217142058389999999996539
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--------------CCCCCHHHHHHHHHHHHHHHHH-HCCC-
Q ss_conf 99977310568998778866189999999999999832--------------2998746855799999998981-0702-
Q 002789 663 MAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILV--------------VFPKVEPLRCKVTSFIHRMVDT-LGAS- 726 (881)
Q Consensus 663 ~~~~~i~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~--------------~~~~~~~ir~~~~~~~~~~i~~-l~~~- 726 (881)
.+++++|.+|.++. ..+|.+++++|...-+ +.+..+.+| .++..+-+++.+ .+..
T Consensus 699 ~v~~~~g~~f~~~~--------~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r-~ik~eil~l~~~~i~~~~ 769 (1073)
T 3gjx_A 699 RACKAVGHPFVIQL--------GRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMR-TVKRETLKLISGWVSRSN 769 (1073)
T ss_dssp HHHHHHCGGGHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCC
T ss_conf 98845652579999--------999999999999999999999982784112259999989-999999999999981479
Q ss_pred -----CCCCHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -----12447999999970599-----45699999999999998220059876555899999997305688888999999
Q 002789 727 -----VFPYLPKALEQLLAESE-----PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTN 796 (881)
Q Consensus 727 -----~~p~lp~~~~~ll~~~~-----~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~ 796 (881)
...++|++++.++.+|. .++ +++|++.+.+|.++|..+.+.+..++..+++.|++|++.++ .
T Consensus 770 ~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~-~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f---~---- 841 (1073)
T 3gjx_A 770 DPQMVAENFVPPLLDAVLIDYQRNVPAARE-PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDF---E---- 841 (1073)
T ss_dssp CHHHHHHHTSHHHHHHTHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCS---S----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC---C----
T ss_conf 789999986789999999988538853136-99999999999998865404489999999999999986773---1----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9889889999999999999999558961102677737869999999985137998210127667778988733
Q 002789 797 TEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHL 869 (881)
Q Consensus 797 ~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~ 869 (881)
++||+|.+||.|+.+++.+||+.+|.-+.. .+..++++++ ++..|++..+..++. .++.+++-
T Consensus 842 -----~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~--~~~~~i~~i~-wa~kh~~r~i~~~~l--~~~~~ll~ 904 (1073)
T 3gjx_A 842 -----EYPEHRTNFFLLLQAVNSHCFPAFLAIPPA--QFKLVLDSII-WAFKHTMRNVADTGL--QILFTLLQ 904 (1073)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHCGGGTTTSCHH--HHHHHHHHHH-HHHTCSSHHHHHHHH--HHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHH-HHCCCCCHHHHHHHH--HHHHHHHH
T ss_conf -----296889999999999999776999839999--9999999999-991899716999999--99999999
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=669.18 Aligned_cols=796 Identities=18% Similarity=0.257 Sum_probs=622.3
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 26999999940699999988899999999999619665999999842388158999999999999973406899888999
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+++++++..+|+| +++.|++|+++|+++|++|++|..|..++.++.++++||||+++|+++|+++|..++++++..
T Consensus 16 ~~l~~~l~~~~~p----~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ 91 (1049)
T 3m1i_C 16 ALLDQVVSTFYQG----SGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1049)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9999999998689----938999999999998839569999999986299889999999999999976070499999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999985330688876778890899999999999999844688880349999972018950589999999999998
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDE 161 (881)
Q Consensus 82 lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~eE 161 (881)
||+.+++++.+...++... .. +++||+|+|++++.|++++||+.||++++++++.++.++..++..+.+|..++||
T Consensus 92 ir~~ll~~l~~~~~~~~~~--~~--~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 92 IRNFVVGMIISMCQDDEVF--KT--QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHH--HH--CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCC--HH--HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999998627762000--00--2899999999999999976811154799999998715858899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-
Q ss_conf 6316789981279999999999988869999999999998310299889999998740042332130002624099999-
Q 002789 162 LISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF- 240 (881)
Q Consensus 162 i~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~- 240 (881)
+.+.. +...+..|+..+|+.|+++ ++.|++.+.+++.. ..++++...+|+|+.+|++|++++.+.++++++.++
T Consensus 168 v~~~~--~~~~~~~r~~~lk~~l~~~-~~~i~~~~~~~l~~--~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~ 242 (1049)
T 3m1i_C 168 VFDFS--AEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQ--GSSSSLIVATLESLLRYLHWIPYRYIYETNILELLST 242 (1049)
T ss_dssp HHTSC--TTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT
T ss_pred HHHHC--CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 98726--0013268999999999999-99999999999986--6888999999999999986088998860559999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH-----HHH-HHHH-HHH-HHH-HCCC-------C--CCCCCHHHHHHHH
Q ss_conf 9986079984577899999999995399914-----469-8998-710-111-0034-------5--7875179999999
Q 002789 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQ-----SKL-NLLQ-TLQ-ISR-VFGL-------V--SEDGESELVSKVA 302 (881)
Q Consensus 241 ~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~-----~k~-~li~-~l~-l~~-i~~~-------~--~~~~d~~~~~~la 302 (881)
.++. +++++.+|++|+++++++++++. .++ .++. .++ +.. +++. + .+++|.++.+.++
T Consensus 243 ~~l~----~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~ 318 (1049)
T 3m1i_C 243 KFMT----SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLA 318 (1049)
T ss_dssp HHHH----SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHH
T ss_pred HHCC----CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 8689----876799999999999948899503468899999999999999886279854178774457710289999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC----CCCCCHHHHHH
Q ss_conf 99999999999998530234415999999997898988650358764256598989999998315----89894788999
Q 002789 303 ALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKS----LSPLKEEQRLH 378 (881)
Q Consensus 303 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~----~~~l~~~~~~~ 378 (881)
++++.++..+.+... ..+ .....+..++++++.+..+++++++ ..+.+||..+.+ .+.....++++
T Consensus 319 ~~~~~~~~~~~~~~~---~~~---~~~~~l~~~l~~ll~~~~~~d~~v~----~~~lefw~~l~~~l~~~~~~~~~~~~~ 388 (1049)
T 3m1i_C 319 MFLTTYLARNRALLE---SDE---SLRELLLNAHQYLIQLSKIEERELF----KTTLDYWHNLVADLFYEPLKKHIYEEI 388 (1049)
T ss_dssp HHHHHHHHHHHHHHH---SCG---GGHHHHHHHHHHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHSTTCGGGGHHH
T ss_pred HHHHHHHHHHHHHHC---CCH---HHHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 999999999999982---882---1479999999999998868908999----999999999999997463589999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999864359545456666787884-----789999999999999999999309266999999999995034688
Q 002789 379 AGQILEVILTQIRYDPMYRNNLDVLDKIGI-----EEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSAD 453 (881)
Q Consensus 379 ~~~Ll~~l~~km~~p~~~~~~~~~~~~~~e-----ed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~ 453 (881)
+.+++.+++.||.||+|.+ |. .++++| .++++..++|+.++++++.++.+.+..+++++.+.+.+.+++ +.
T Consensus 389 l~~Lv~~ll~~m~~~ed~~--~~-~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~-~~ 464 (1049)
T 3m1i_C 389 CSQLRLVIIENMVRPEEVL--VV-ENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG-SE 464 (1049)
T ss_dssp HHHHHHHHHHTCCCCTTCC--EE-ECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHHHHCCCCCCEE--EE-ECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CC
T ss_conf 9999999998658996200--00-57998504865312227999999999999988369899999999999987277-87
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHH-C-CCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 98113989999999961118603532100289999999870-9-999-98972589999999997598885558874999
Q 002789 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQ-T-KLP-CHSNRLVALVYLETVTRYMKFIQEHTQYIPVV 530 (881)
Q Consensus 454 ~~w~~~Eaal~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~-~-~~~-~~~~~~V~~~~~~~i~ry~~~l~~~~~~L~~v 530 (881)
.+|+.+|+++++++++++++.+.. ...+++.+++.++. . ... .++||.|+.++++++|||++|+..||++++++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~---e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDT---EKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 898999999999999860237625---57999999999998776543566549999889999997799998678999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 9996402688899801246799999999998432000--------46999999846312023556744335799520457
Q 002789 531 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--------PFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 602 (881)
Q Consensus 531 L~~~l~~~gl~~~~~~v~~~a~~~l~~l~~~~~~~l~--------p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~ 602 (881)
+..++ .++++++++|+.+||++|.+||++|+..+. ||+++|++.+..++... ..++...
T Consensus 542 l~~ll--~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~-----------~~~~~~~ 608 (1049)
T 3m1i_C 542 ILKLF--EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-----------QPQQVHT 608 (1049)
T ss_dssp HHHHH--HHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-----------CHHHHHH
T ss_pred HHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC-----------CHHHHHH
T ss_conf 99999--9861898789999999999999998898611567787757999999899999858-----------9999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCC
Q ss_conf 99988787516899953068999986677999999999764205----99023568999-98999999773105689987
Q 002789 603 IFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKML----NPEESTAKFAN-IQQIIMAINALSKGFNERLV 677 (881)
Q Consensus 603 l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~----~~~e~~~~~~~-l~~~~~~~~~i~k~f~~~~~ 677 (881)
+|||+|.++++.+ +.+.+..+++.+++|+.++|++.+++.... .+.+....+.. +.+...++.++|++|.++.
T Consensus 609 ~~eai~~ii~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~- 686 (1049)
T 3m1i_C 609 FYKACGIIISEER-SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL- 686 (1049)
T ss_dssp HHHHHHHHHHTCC-SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999997599-78999999999998899999999998731646404879999999999999999998567889999-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC-------C----CC---HHHH-------HHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 7886618999999999999983229-------9----87---4685-------579999999898107021244799999
Q 002789 678 TSSRPAIGLMFKQTLDVLLQILVVF-------P----KV---EPLR-------CKVTSFIHRMVDTLGASVFPYLPKALE 736 (881)
Q Consensus 678 ~~~~~~~~~if~~~~~~~~~~l~~~-------~----~~---~~ir-------~~~~~~~~~~i~~l~~~~~p~lp~~~~ 736 (881)
..++.+++.++....... . .. ..++ ..+..+.+++ .+++..+.|++|++++
T Consensus 687 -------~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~-~~l~~~~~~~~~~~l~ 758 (1049)
T 3m1i_C 687 -------GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA-RNLDDVVKVLVEPLLN 758 (1049)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC-SCHHHHHHHTHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_conf -------99999999999999998999997058502210889999999999999999999847-9779999987899999
Q ss_pred HHHCCCC-----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9970599-----45699999999999998220059876555899999997305688888999999988988999999999
Q 002789 737 QLLAESE-----PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLY 811 (881)
Q Consensus 737 ~ll~~~~-----~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~ 811 (881)
.++.+|. .++ +.+|++++.++.++|..+.+++..++..++.++++++..+. + ++||++++||
T Consensus 759 ~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~---~---------~~pd~~~~~f 825 (1049)
T 3m1i_C 759 AVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDF---T---------EYPEHRVEFY 825 (1049)
T ss_dssp HHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCS---S---------SSHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---H---------HCHHHHHHHH
T ss_conf 999988718963236-87999999999998876066689999999999999985242---1---------0899999999
Q ss_pred HHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999955896110-26777378699999999851379982101276677789887333477
Q 002789 812 TFLHVIATHDLSSVF-LSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFSI 873 (881)
Q Consensus 812 ~ll~~i~~~~~~~~l-~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~~ 873 (881)
+|+++++++|+..++ +++ ..+..+++++++ +..|+|+.+.|++. .|+..++.-+..
T Consensus 826 ~ll~~i~~~~~~~l~~~~~---~~~~~v~~~~~~-al~~~~~~~~~~~l--~~l~~l~~~~~~ 882 (1049)
T 3m1i_C 826 KLLKVINEKSFAAFLELPP---AAFKLFVDAICW-AFKHNNRDVEVNGL--QIALDLVKNIER 882 (1049)
T ss_dssp HHHHHHHHHCTHHHHHSCH---HHHHHHHHHHHH-HHTCCSHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHCCCH---HHHHHHHHHHHH-HHCCCCCHHHHHHH--HHHHHHHHHHHH
T ss_conf 9999999867899975999---999999999999-94799816999999--999999999876
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=654.51 Aligned_cols=797 Identities=12% Similarity=0.190 Sum_probs=620.0
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 26999999940699999988899999999999619665999999842388158999999999999973406899888999
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+++++|+..+|+| |++.|++|+++|++||++|++|.+|..+|..+.++++||||+++|+++|+++|..++++++..
T Consensus 7 ~~l~~~l~~~~~~----d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 82 (971)
T 2x1g_F 7 ARLEEAVVSFYRS----NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREE 82 (971)
T ss_dssp ----CTHHHHHTS----TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred HHHHHHHHHHCCC----CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHH
T ss_conf 9999999987699----999999999999998749798999999983599498999999999999971586499999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-------CCHHHHHHHHH
Q ss_conf 99999999985330688876778890899999999999999844688880349999972018-------95058999999
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK-------GSMVIDMFCRV 154 (881)
Q Consensus 82 lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~-------~~~~~~~~L~i 154 (881)
+|+.+++++.+.. .+ +++||+|+|.+++.|++++|| .||++++++++.+++ ++..++..+++
T Consensus 83 ir~~ll~~l~~~~---------~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i 151 (971)
T 2x1g_F 83 LKQKILESIVRFA---------GG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEV 151 (971)
T ss_dssp HHHHHHHHHHHHT---------TS-CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---------CC-CHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999867---------99-878999999999999997062-243799999999715334567878899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHCCCCC--CCCC
Q ss_conf 99999986316789981279999999999988869999999999998310299-----8899999987400423--3213
Q 002789 155 LNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSD-----FEVCTGVLDCMRRYIS--WIDI 227 (881)
Q Consensus 155 L~~l~eEi~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~-----~~l~~~~L~~l~~~i~--wi~~ 227 (881)
|..++||+...+ +..|+..+++.|+.+ ++.+++++.+++....+.. .++...+++|+++|+. |++.
T Consensus 152 L~~l~EEi~~~~------~~~~r~~~~~~l~~~-~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~ 224 (971)
T 2x1g_F 152 LTAIPEEAQVIH------TSVKRVVLRAEIAKR-VQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTI 224 (971)
T ss_dssp HHHHHHHHHHCC------CSSCHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHHHHCCC------CHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 998599882468------578999999999987-9999999999985546788886423679999999999982578386
Q ss_pred CCCCCCCCHHHHHHHHH--------------HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HH-HHHHHCCCC--
Q ss_conf 00026240999999986--------------0799845778999999999953999144698998-71-011100345--
Q 002789 228 NLIANDAFIPLLFELIL--------------ADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQ-TL-QISRVFGLV-- 289 (881)
Q Consensus 228 ~~~~~~~~l~~l~~~L~--------------~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li~-~l-~l~~i~~~~-- 289 (881)
+ .++.+++.++. |. +..++++++.+|++|+.++++++. +.++..++. .+ ++.++.+.+
T Consensus 225 ~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 300 (971)
T 2x1g_F 225 E--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPD-CHNYPKTAFVLIKMFLDSLSEITK 300 (971)
T ss_dssp G--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSG-GGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5--66319999986-4355302323566555676774799999999999976801-132088999999999986899999
Q ss_pred -CCCCC---HHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHH
Q ss_conf -78751---79999999999999999999985-3023441599999999789898865035-----87642565989899
Q 002789 290 -SEDGE---SELVSKVAALLTGYAMEVLDCVK-RLNAENANEASKKLLNEVLPSVFYVMQN-----CEVDTTFSIVQFLS 359 (881)
Q Consensus 290 -~~~~d---~~~~~~la~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~-----~~~~v~~~~~~~~~ 359 (881)
..++| .++...++++++.++..+.+... .+... .......+..+++.++.++.+ .+++++..+++||.
T Consensus 301 ~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~ 378 (971)
T 2x1g_F 301 TEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSA--DPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWY 378 (971)
T ss_dssp HHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98565654068999999999999999999999873157--6535499999999999997588888863124587899999
Q ss_pred HHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99998315------898947889999999999998643595454566667878847899999999999999999993092
Q 002789 360 GYVATMKS------LSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAP 433 (881)
Q Consensus 360 ~~w~~l~~------~~~l~~~~~~~~~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~ 433 (881)
.+...+.. ........++++.+++.+++.||.||++.+ +++++.+|+++|.++|++++++++.++.+.+
T Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~-----~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~ 453 (971)
T 2x1g_F 379 MLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS-----LAKWSSDDLECFRCYRQDISDTFMYCYDVLN 453 (971)
T ss_dssp HHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT-----TSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999974133100089999999999999999999861999624-----3356775799999999999999999999970
Q ss_pred HHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCC-CCCCHHHHHHHH
Q ss_conf 669999999999950346--88981139899999999611186035321002899999998709999-989725899999
Q 002789 434 EVTQVFIRNSLANAVTFS--ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLP-CHSNRLVALVYL 510 (881)
Q Consensus 434 ~~~l~~i~~~l~~~l~~~--~~~~w~~~Eaal~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~-~~~~~~V~~~~~ 510 (881)
+.+++.+.+.+.+.++++ ++.+|+++||++++++++++++.... ...++.++..+.+ ++ .++||.|+.+++
T Consensus 454 ~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~--l~~~d~~~~vr~~a~ 527 (971)
T 2x1g_F 454 DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAE--IPYEKLNVKLLGTAL 527 (971)
T ss_dssp THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHH--SCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHH--CCCCCCCHHHHHHHH
T ss_conf 9999999999999997346898738999999999999983548033----4779999999985--676536789999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99997598885558874999999640268889980124679999999999843200046999999846312023556744
Q 002789 511 ETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYA 590 (881)
Q Consensus 511 ~~i~ry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~a~~~l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~ 590 (881)
+++|||++|+..+++++++++..++ .++ + ++|+.+||++|.+||+.|+..+.||++.|++.+..++....
T Consensus 528 ~~l~~~~~~l~~~~~~l~~vl~~l~--~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~----- 597 (971)
T 2x1g_F 528 ETMGSYCNWLMENPAYIPPAINLLV--RGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR----- 597 (971)
T ss_dssp HHHHHTHHHHC----CHHHHHHHHH--HHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT-----
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHH--HHH-C--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-----
T ss_conf 9999878888608898999999999--874-8--58899999999999999888623007999999999972789-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 3357995204579998878751689995306899998667799999999976420599023568999-989999997731
Q 002789 591 SKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALS 669 (881)
Q Consensus 591 ~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~-l~~~~~~~~~i~ 669 (881)
+..+.+..+||++|.++++.+ ++++..+++.++.|+++.|++..+.... +++....... +..+..++..++
T Consensus 598 ----~~~~~~~~~~~ai~~i~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~~--~~~~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 598 ----MKNSDSVRLMFSIGKLMSLLR--PEEIPKYLDIIVSPCFEELQAICQADSK--TPAARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp ----SCHHHHHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----CCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----992899999999999997299--9999999999998999999999856899--82259999999999999984167
Q ss_pred CCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 056899877-8866189999999999999832299874685579999999898107021244799999997059945699
Q 002789 670 KGFNERLVT-SSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMA 748 (881)
Q Consensus 670 k~f~~~~~~-~~~~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~i~~l~~~~~p~lp~~~~~ll~~~~~~~~~ 748 (881)
..+.....+ ....++.+++.++++++..+++.+.++..+.++++.++++++.++|.++.||+|++++.++..++..+++
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~ 749 (971)
T 2x1g_F 670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCA 749 (971)
T ss_dssp C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 77685333456788369999999999999998643637899999999999998614404252789999999998668834
Q ss_pred HHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999982200--59876555899999997305688888999999988988999999999999999955896110
Q 002789 749 GFLVLLNQLICKFNTL--VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVF 826 (881)
Q Consensus 749 ~~L~l~~~li~~~~~~--~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l 826 (881)
++|+++++++.+||.+ ..+.+..++.+++.+++.++.... +++.++.||++++||.|+++++++++..++
T Consensus 750 ~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--------~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~ 821 (971)
T 2x1g_F 750 PTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTP--------EQNFSNISDTMETFFGCLTQIIKKIPQVLE 821 (971)
T ss_dssp HHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCT--------TTHHHHTHHHHHHHHHHHHHHHHSSGGGGG
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCCCCHHHHHHHHHHHHHHHHCCHHHC
T ss_conf 999999999999588900589999999999999999986065--------467764844899999999999986859981
Q ss_pred CCCCCCCC-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 26777378-699999999851379982101276677789887333
Q 002789 827 LSPKSRGY-LDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLG 870 (881)
Q Consensus 827 ~s~~~~~~-l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~ 870 (881)
.+ +. ++.++...+.+ +.++|+.+.|+++ .|++.++.-
T Consensus 822 ~s----~~~l~~i~~~~~~~-l~~~~~~~~~s~~--~fl~~~i~~ 859 (971)
T 2x1g_F 822 DK----TLAYDRLVFYAQRG-MTLPESGAIRNSI--QFLTHFVMQ 859 (971)
T ss_dssp CT----TSCHHHHHHHHHHH-HTSSCSSHHHHHH--HHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHH-CCCCCHHHHHHHH--HHHHHHHHC
T ss_conf 88----21289999999998-2878778999999--999999860
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=644.69 Aligned_cols=782 Identities=14% Similarity=0.194 Sum_probs=619.5
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 26999999940699999988899999999999619665999999842388158999999999999973406899888999
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+++++|+..+|++ +|++.|++|+++|++||++|++|.+|..++.++.++++||||+++|+++|+++|..++++++..
T Consensus 24 ~~l~~~l~~l~~~---~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 24 ENVEKALHQLYYD---PNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred HHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCHHHHHH
T ss_conf 9999999998359---7989999999999998469999999999865797258899999999999973887499999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC------CCHHHHHHHHHH
Q ss_conf 99999999985330688876778890899999999999999844688880349999972018------950589999999
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK------GSMVIDMFCRVL 155 (881)
Q Consensus 82 lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~------~~~~~~~~L~iL 155 (881)
||+.+++++.... .. +++||+|+|.+++.|++++||+.||++++++++.+++ ++..++..+++|
T Consensus 101 ir~~ll~~l~~~~---------~~-~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL 170 (963)
T 2x19_B 101 LKAQLFTQITRFA---------SG-SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELL 170 (963)
T ss_dssp HHHHHHHHHHHTT---------TS-CHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---------CC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999999999874---------89-8899999999999999874831155599999999864335787478899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999863167899812799999999999888699999999999983102998899999987400423321300026240
Q 002789 156 NSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAF 235 (881)
Q Consensus 156 ~~l~eEi~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~ 235 (881)
..++||+.+... +..|+..+++.|+.. ++.++.++.+++... ..+..+...+++|+.+|+. ++.....++.+
T Consensus 171 ~~l~ee~~~~~~-----~~~~r~~~~~~l~~~-~~~i~~ll~~~l~~~-~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~l 242 (963)
T 2x19_B 171 TVLPEEFQTSRL-----PQYRKGLVRTSLAVE-CGAVFPLLEQLLQQP-SSPSCVRQKVLKCFSSWVQ-LEVPLQDCEAL 242 (963)
T ss_dssp HHHHHHHTTCCC--------------CCSGGG-HHHHHHHHHHHHSCT-TCCHHHHHHHHHHHHHHHT-SSCCGGGTHHH
T ss_pred HHCHHHHHCCCC-----CHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHC-CCCCCCCCHHH
T ss_conf 868998850658-----699999999999987-889999999998277-8805799999999999982-89985341689
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHH-HHHHCCC---CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999986079984577899999999995399914469899-8710-1110034---5787517999999999999999
Q 002789 236 IPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLL-QTLQ-ISRVFGL---VSEDGESELVSKVAALLTGYAM 310 (881)
Q Consensus 236 l~~l~~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li-~~l~-l~~i~~~---~~~~~d~~~~~~la~l~~~~~~ 310 (881)
++.+++++. +++++.+|++|+.++++++..+. ....+ ..+. +....+. ...++|.++...++++++.++.
T Consensus 243 l~~l~~~l~----~~~~~~~a~~~l~~i~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~ 317 (963)
T 2x19_B 243 IQAAFAALQ----DSELFDSSVEAIVNAISQPDAQR-YVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGE 317 (963)
T ss_dssp HHHHHHHTT----STTTHHHHHHHHHHHHTCTTGGG-CHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999867----96479999999999975311245-7799999999997407999999987798999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHCCC---------CCCCHHHH
Q ss_conf 999998530234415999999997898988650358-----7642565989899999983158---------98947889
Q 002789 311 EVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNC-----EVDTTFSIVQFLSGYVATMKSL---------SPLKEEQR 376 (881)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-----~~~v~~~~~~~~~~~w~~l~~~---------~~l~~~~~ 376 (881)
.+.... .... .....+..++++++.+..++ +++++..+ .+||+.+.+. +.....++
T Consensus 318 ~~~~~l---~~~~---~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~----l~fw~~l~~~~~~~~~~~~~~~~~~~~ 387 (963)
T 2x19_B 318 NHSRAL---LDQV---EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLT----LTFWYTLQDDILSFEAEKQAVYQQVYR 387 (963)
T ss_dssp HHHHHH---HHCG---GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGG----HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHH---HCCC---CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 869999---7375---565899999999999975888887203454412----999999999998623444578899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 999999999998643595454566667878847899999999999999999993092669999999999950346-8898
Q 002789 377 LHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS-ADRN 455 (881)
Q Consensus 377 ~~~~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~-~~~~ 455 (881)
+++.+++.+++.||.||++.+ ++++++|++++|.+||++++++++.++.+.++.+++.+.+.+.+.++++ ++.+
T Consensus 388 ~~l~~l~~~ll~~~~~p~~~~-----~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 462 (963)
T 2x19_B 388 PVYFQLVDVLLHKAQFPSDEE-----YGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS 462 (963)
T ss_dssp HHHHHHHHHHHHHHSCCCHHH-----HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC
T ss_pred HHHHHHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999980998302-----267776389999999999999999999970689999999999999972579986
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 11398999999996111860353210028999999987099999897258999999999759888555887499999964
Q 002789 456 VEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFL 535 (881)
Q Consensus 456 w~~~Eaal~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~~V~~~~~~~i~ry~~~l~~~~~~L~~vL~~~l 535 (881)
|+.+|+++++++++++++.++. ...++.+++.+.+ . ..+||.|+.++++++|||++|+..|++++++++..++
T Consensus 463 w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~--l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~ 535 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPR--I-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVL 535 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGG--S-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHH--C-CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 6799899999999970438224----6789999999985--7-9985899999999999888888758898999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 02688899801246799999999998432000469999998463120235567443357995204579998878751689
Q 002789 536 DERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED 615 (881)
Q Consensus 536 ~~~gl~~~~~~v~~~a~~~l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~ 615 (881)
.++++ ++|+.+||++|.+||++|+..+.||+++|++.+..++.... +..+.+..+||++|.++++.+
T Consensus 536 --~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~---------~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 536 --HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQI---------HKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp --HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTC---------SCHHHHHHHHHHHHHHHTTSC
T ss_pred --HHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHCCC
T ss_conf --87178--46899999999999999899877669999999999863578---------984889999999999996299
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------CCCC
Q ss_conf 99530689999866779999999997642059902356899998999999773105689987--------------7886
Q 002789 616 VPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLV--------------TSSR 681 (881)
Q Consensus 616 ~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~i~k~f~~~~~--------------~~~~ 681 (881)
.+++..|++.+++|+.+.|+++.++. .+++... .+...+.+++++++++..... +...
T Consensus 603 --~~~~~~~~~~l~~~l~~~l~~~~~~~---~~~~~~~---~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (963)
T 2x19_B 603 --VEEILKNLHSLISPYIQQLEKLAEEI---PNPSNKL---AIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGP 674 (963)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHSSC---SCHHHHH---HHHHHHHHHHHHHHHCCSSCCC---------------CC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --99999999999989999999998278---9877899---999999999999977489864332223221247777889
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 61899999999999998322998746855799999998981070212447999999970599456999999999999982
Q 002789 682 PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKF 761 (881)
Q Consensus 682 ~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~i~~l~~~~~p~lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~ 761 (881)
.++..++.++++++..+++.+.++..+.+.++.++++++.++|..+.|++|++++.++..|...+.++++.+++.++..|
T Consensus 675 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f 754 (963)
T 2x19_B 675 NPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIF 754 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 94699999999999999985667468999999999999975010342407999999999987578508999999999985
Q ss_pred HCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-HHHH
Q ss_conf 200--5987655589999999730568888899999998898899999999999999995589611026777378-6999
Q 002789 762 NTL--VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGY-LDPI 838 (881)
Q Consensus 762 ~~~--~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~-l~~~ 838 (881)
|.+ ..+.+.+++..++.++++++.... . ++||++++||.|+.+++++++..++ + .+. ++.+
T Consensus 755 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~---~---------~~pd~~~~~f~ll~~~~~~~~~~~~-~---~~~~~~~i 818 (963)
T 2x19_B 755 AHEPAHFPPIEALFLLVTSVTLTLFQQGP---R---------DHPDIVDSFMQLLAQALKRKPDLFL-C---ERLDVKAV 818 (963)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHHHHCT---T---------TCHHHHHHHHHHHHHHHHHCGGGGG-C---TTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCC---C---------CCCHHHHHHHHHHHHHHHHCCHHHC-C---CCCCHHHH
T ss_conf 77801378999999999999999986276---5---------5863899999999999975839872-9---85147999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999998513799821012766777898873334
Q 002789 839 MQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGF 871 (881)
Q Consensus 839 l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~ 871 (881)
+.+++++ ..++|+.+.|+|+ .|+..++.-+
T Consensus 819 ~~~~~~~-l~~~~~~~~~~~l--~~l~~l~~~~ 848 (963)
T 2x19_B 819 FQCAVLA-LKFPEAPTVKASC--GFFTELLPRC 848 (963)
T ss_dssp HHHHHHH-TTCSCHHHHHHHH--HHHHHHGGGT
T ss_pred HHHHHHH-CCCCCHHHHHHHH--HHHHHHHHCC
T ss_conf 9999997-5789779999999--9999998518
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=560.28 Aligned_cols=600 Identities=15% Similarity=0.237 Sum_probs=474.7
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 26999999940699999988899999999999619665999999842-38815899999999999997340689988899
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS-LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERN 80 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~-~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~~ 80 (881)
+++++|+..+|+|+ +|++.|++|+++|+++|++|++|..+..+|. .+.++++||||+++|+++|+++|..++++++.
T Consensus 11 ~~l~~~l~~~~~p~--~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPN--STQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999985899--9869999999999998839527999999997138998999999999999998715669999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998533068887677889089999999999999984468888034999997201895058999999999999
Q 002789 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDD 160 (881)
Q Consensus 81 ~lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~e 160 (881)
.||+.+++++.+.. ...... +++||||+|++++.|++++||++||++++++++++++++..++..+++|..++|
T Consensus 89 ~Ir~~ll~~l~~~~-----~~~~~~-~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 89 YLKNSVMELIANGT-----LNILEE-ENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHSS-----CCTTSS-CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-----CCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999987303-----455556-579999999999999998681312589999999864898899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHCCCCCC
Q ss_conf 86316789981279999999999988869999999999998310----------------29988999999874004233
Q 002789 161 ELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYR----------------SSDFEVCTGVLDCMRRYISW 224 (881)
Q Consensus 161 Ei~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~----------------~~~~~l~~~~L~~l~~~i~w 224 (881)
|+.+.+. ....|++.+++.|+++ ++.|+..|.+++.... ..+..+...+|+|+.+|++|
T Consensus 163 ev~~~~~----~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 163 DVVTFQT----LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHTSCC----SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHCCCCC----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8706220----6899999999999999-9999999999999987877304520000112244599999999999999842
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHCCCC---C----CC
Q ss_conf 2130002624--09999999860799845778999999999953999144698998710---11100345---7----87
Q 002789 225 IDINLIANDA--FIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ---ISRVFGLV---S----ED 292 (881)
Q Consensus 225 i~~~~~~~~~--~l~~l~~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li~~l~---l~~i~~~~---~----~~ 292 (881)
++++++++.+ +++.++.++. ++.+|.+|++||++|++++++|.++..++..++ +..++... . ++
T Consensus 238 i~~~~i~~~~~~ll~~l~~~l~----~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e 313 (1204)
T 3a6p_A 238 VSMSHITAENCKLLEILCLLLN----EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE 313 (1204)
T ss_dssp SCHHHHHTTTSHHHHHHHHGGG----CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCH
T ss_pred CCHHHHHHCCCHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6889998555529999999759----888899999999999948898256789999971689999999863378788760
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC--
Q ss_conf 517999999999999999999998530234415999999997898988650358764256598989999998315898--
Q 002789 293 GESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSP-- 370 (881)
Q Consensus 293 ~d~~~~~~la~l~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~-- 370 (881)
+|.+++++++++++.+|.++.......... .....+..++++++.+++|++.+++ ..+..||+.+.+...
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~----~~~~~l~~~l~~lL~~t~~~~~~vs----~~~l~fW~~ll~~~~~~ 385 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQLCALLGADSDV----ETPSNFGKYLESFLAFTTHPSQFLR----SSTQMTWGALFRHEILS 385 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSC----CCCTTHHHHHHHHHHHHTSSCHHHH----HHHHHHHHHHHSCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHCCCCC
T ss_conf 789999999999999999999998123234----6716799999999999818207868----99999999997064446
Q ss_pred CCHHHHHHHHHHHHHH---HHHHCCCCCCCCC-CCCC--CCCC-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 9478899999999999---9864359545456-6667--8788-478999999999999999999930926699999999
Q 002789 371 LKEEQRLHAGQILEVI---LTQIRYDPMYRNN-LDVL--DKIG-IEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNS 443 (881)
Q Consensus 371 l~~~~~~~~~~Ll~~l---~~km~~p~~~~~~-~~~~--~~~~-eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~ 443 (881)
..+...+++.+|++++ +.||+||++.++. ..|. |.++ +|+++.|++||++++++++.++.+.|..++.++.+.
T Consensus 386 ~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~ 465 (1204)
T 3a6p_A 386 RDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEW 465 (1204)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 54789998999999999998971586446884113432255870899999999999999999999852889999999999
Q ss_pred HHHHHCCC----------------------CCCCHHHHHHHHHHHHHHHHCCCCHHHHC--CCHHHHHHHHHHHHCCCCC
Q ss_conf 99950346----------------------88981139899999999611186035321--0028999999987099999
Q 002789 444 LANAVTFS----------------------ADRNVEEVEAALTLLYALGESMSEEAMRT--GAGHLSELVPMLLQTKLPC 499 (881)
Q Consensus 444 l~~~l~~~----------------------~~~~w~~~Eaal~~l~~i~e~~~~~~~~~--~~~~l~~ll~~l~~~~~~~ 499 (881)
+.+.+.++ .+.+|...|+..+.+.++++++.....+. +...++.+++.++. + .
T Consensus 466 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~--~-~ 542 (1204)
T 3a6p_A 466 LKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN--F-D 542 (1204)
T ss_dssp HHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH--C-C
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH--C-C
T ss_conf 999975340044566532212355654576888999999999999999999840124453338999999999983--7-8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCC-------CCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 89725899999999975988855588749999996402---68889-------980124679999999999843200046
Q 002789 500 HSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDE---RGIHH-------PNVHVSRRASYLFMRVVKLLKAKLVPF 569 (881)
Q Consensus 500 ~~~~~V~~~~~~~i~ry~~~l~~~~~~L~~vL~~~l~~---~gl~~-------~~~~v~~~a~~~l~~l~~~~~~~l~p~ 569 (881)
..||.++.+.+.++|+|++|+..||++++++|+.++.. .+... .+++||.+||++|.++|+.|+..+.||
T Consensus 543 ~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~ 622 (1204)
T 3a6p_A 543 TKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPN 622 (1204)
T ss_dssp CSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87757999999999987878862925799999999986156884312466318999999999999999999746878789
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999846312023556744335799520457999887875168999530689999866779999999
Q 002789 570 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQT 638 (881)
Q Consensus 570 ~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~ 638 (881)
++.|.+.+..++.... .++..++..+|||++.+....+ +.+++..+++.+++|++++|++
T Consensus 623 ~~~i~~~~~~~l~~~~--------~l~~~e~~~L~eal~~ia~~~~-~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 623 FDMLYNHVKQLLSNEL--------LLTQMEKCALMEALVLISNQFK-NYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHSTT--------TSCHHHHHHHHHHHHHHHGGGC-CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999984765--------1468889999999999963679-7999999999999999998746
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=377.54 Aligned_cols=716 Identities=15% Similarity=0.196 Sum_probs=486.0
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 26999999940699999988899999999999619665999999842--3881589999999999999734068998889
Q 002789 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS--LCNIVQVQFWCLQTLSEVVRVKYTSMSSEER 79 (881)
Q Consensus 2 ~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~--~~~~~~vrffa~~~L~~~I~~~w~~l~~e~~ 79 (881)
+++.+++...++| |++.|++|+++|++++++|++|.++..++. .+.++.+|++|+..|++.|+++|..++++.+
T Consensus 13 ~~l~~~l~~~~s~----d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~ 88 (852)
T 4fdd_A 13 QQILQLLKESQSP----DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 88 (852)
T ss_dssp HHHHHHHHHHTCS----CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999999987394----989999999999998709988999999985668898679999999999989874477999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Q ss_conf 99999999999853306888767788908999999999999998446888803499999720189-50589999999999
Q 002789 80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVIDMFCRVLNSL 158 (881)
Q Consensus 80 ~~lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l 158 (881)
..||+.+++.+.. + ++.+|++++.+++.++.+++|..||++++.+++.++++ +...+..+.+|..+
T Consensus 89 ~~ik~~ll~~l~~-----------~--~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i 155 (852)
T 4fdd_A 89 DFIKSECLNNIGD-----------S--SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKI 155 (852)
T ss_dssp HHHHHHHHTTTTC-----------S--SHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----------C--CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999998749-----------9--89999999999999998648135689999999987099989999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCHH
Q ss_conf 99863167899812799999999999888699999999999983102998899999987400423321300026-24099
Q 002789 159 DDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN-DAFIP 237 (881)
Q Consensus 159 ~eEi~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~-~~~l~ 237 (881)
.++..... .+ +.+.. .+..++..+.+.+. ..+++++..+++++..++...+-.+... +.+++
T Consensus 156 ~~~~~~~~--------~~-----~~~~~-~~~~il~~l~~~l~---~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~ 218 (852)
T 4fdd_A 156 CEDSAEIL--------DS-----DVLDR-PLNIMIPKFLQFFK---HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIE 218 (852)
T ss_dssp HHHHTTHH--------HH-----CSSSS-CHHHHHHHHTTTTT---CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHH
T ss_pred HHHHHHHH--------CH-----HHHCC-HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99857875--------63-----43133-29999999999856---7978999999999999986463879988999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999860799845778999999999953999144698998710111003457875179999999999999999999985
Q 002789 238 LLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVK 317 (881)
Q Consensus 238 ~l~~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li~~l~l~~i~~~~~~~~d~~~~~~la~l~~~~~~~l~~~~~ 317 (881)
.++..+. .+++.+|..|++|+..++... |. .+
T Consensus 219 ~l~~~~~--d~~~~vr~~a~~~L~~l~~~~--~~----~~---------------------------------------- 250 (852)
T 4fdd_A 219 NLFALAG--DEEPEVRKNVCRALVMLLEVR--MD----RL---------------------------------------- 250 (852)
T ss_dssp HHHHHHT--CCCHHHHHHHHHHHHHHHHHC--HH----HH----------------------------------------
T ss_pred HHHHHCC--CCCHHHHHHHHHHHHHHHHHC--HH----HH----------------------------------------
T ss_conf 9998717--997789999999999999857--79----89----------------------------------------
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 30234415999999997898988650358764256598989999998315898947889999999999998643595454
Q 002789 318 RLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYR 397 (881)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~~~~Ll~~l~~km~~p~~~~ 397 (881)
. .++..+++.++.++.+++++++..+ .+||..+.+........++++.+++++++.+|.|++++.
T Consensus 251 --~---------~~l~~l~~~l~~~~~~~~~~vr~~a----~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 251 --L---------PHMHNIVEYMLQRTQDQDENVALEA----CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp --G---------GGHHHHHHHHHHHHTCSSHHHHHHH----HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred --H---------HHHHHHHHHHHHHCCCCCHHHHHHH----HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf --9---------8899999999987069968999999----999999860365798878889889999998757867679
Q ss_pred CCCCCC-CC--CCHHHHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 566667-87--8847899--999999999999999993092669999999999950346889811398999999996111
Q 002789 398 NNLDVL-DK--IGIEEED--RMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGES 472 (881)
Q Consensus 398 ~~~~~~-~~--~~eed~~--~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~Eaal~~l~~i~e~ 472 (881)
. |. .+ +++++++ ..+..|+.....++.++...++.+++.+.+.+.+.+.+ .+|+.+++++.+++.++++
T Consensus 316 ~---~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~---~~~~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 316 I---LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH---HEWVVKESGILVLGAIAEG 389 (852)
T ss_dssp H---HHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHTTTT
T ss_pred H---HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHC
T ss_conf 9---866984432224564011169999999999998746187899999999998559---9889999999999999863
Q ss_pred CCCHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 86035321002899999998709999989725899999999975988855--5887499999964026888998012467
Q 002789 473 MSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--HTQYIPVVLAAFLDERGIHHPNVHVSRR 550 (881)
Q Consensus 473 ~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~~V~~~~~~~i~ry~~~l~~--~~~~L~~vL~~~l~~~gl~~~~~~v~~~ 550 (881)
+.+.. ...++.+++.++. ...++++.|+.+.++++|++++++.. +..++.+++..++ .++.+++++||..
T Consensus 390 ~~~~~----~~~l~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~--~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 390 CMQGM----IPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL--KRILDSNKRVQEA 461 (852)
T ss_dssp THHHH----GGGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH--HHHTCSSHHHHHH
T ss_pred CHHHH----HHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHCCCHHHHHH
T ss_conf 56889----9879999999998--71799889999999999999988611047899999999999--9985898889999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999998432000469999998463120235567443357995204579998878751689995306899998667
Q 002789 551 ASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLT 630 (881)
Q Consensus 551 a~~~l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~ 630 (881)
|+.++..+++.+++.+.||++.++..+..++... ..+....++++++.++...+ +.-.+..|++.+++
T Consensus 462 a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~-----------~~~~~~~~~~ai~~l~~~~~-~~~~~~~~~~~l~p 529 (852)
T 4fdd_A 462 ACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-----------QHKNLLILYDAIGTLADSVG-HHLNKPEYIQMLMP 529 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHG-GGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------CHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHH
T ss_conf 9999999999736766767999999999999883-----------74799999999999999742-43136789999889
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---------------------------CCCC-
Q ss_conf 799999999976420599023568999989999997731056899877---------------------------8866-
Q 002789 631 PLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVT---------------------------SSRP- 682 (881)
Q Consensus 631 pl~~~l~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~i~k~f~~~~~~---------------------------~~~~- 682 (881)
++++.|+...+. +.+ ...+ +.++..++.++|..|.++..+ .+..
T Consensus 530 ~l~~~~~~l~d~-----~~~-~~~~--~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~ 601 (852)
T 4fdd_A 530 PLIQKWNMLKDE-----DKD-LFPL--LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 601 (852)
T ss_dssp HHHHHHHHSCTT-----CTT-HHHH--HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTH
T ss_pred HHHHHHHHCCCC-----CHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 999998733304-----699-9999--99999999997486798899999999999999999998753388666887611
Q ss_pred ------------------CHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
Q ss_conf ------------------189999--999999999832299874685579999999898107021244799999997059
Q 002789 683 ------------------AIGLMF--KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (881)
Q Consensus 683 ------------------~~~~if--~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~i~~l~~~~~p~lp~~~~~ll~~~ 742 (881)
...+.+ .++++++..++. ..+..+|+.+..++..++..++..+.||++.+++.++...
T Consensus 602 ~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l 679 (852)
T 4fdd_A 602 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL 679 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999978999874769988367718999999838--9984499999999999999816888987999999999876
Q ss_pred CHH--H-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 945--6-9999999999999822005987655589999999730568888899999998898899999999999999995
Q 002789 743 EPK--E-MAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIAT 819 (881)
Q Consensus 743 ~~~--~-~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~ 819 (881)
+.. + .......++.++..++.++.|++..++.+++ .++.... ....+++.....++++..
T Consensus 680 ~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~----~~l~~~~-------------~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 680 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV----EIINRPN-------------TPKTLLENTAITIGRLGY 742 (852)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHH----HHHTCSS-------------CCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCC-------------CCCHHHHHHHHHHHHHHH
T ss_conf 94206899999999999999711767878999999999----9857998-------------872077889999999998
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5896110267773786999999998513799821012766777898873334776
Q 002789 820 HDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFSIL 874 (881)
Q Consensus 820 ~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~~~ 874 (881)
.++..+ .|+++.++...+.......|..-...+|. +++..+.--+.+.
T Consensus 743 ~~~~~~------~~~l~~~~~~~~~~l~~~~d~~e~~~a~~-~l~~li~~~p~~~ 790 (852)
T 4fdd_A 743 VCPQEV------APMLQQFIRPWCTSLRNIRDNEEKDSAFR-GICTMISVNPSGV 790 (852)
T ss_dssp HCHHHH------GGGHHHHHHHHHHHHHTSCSSHHHHHHHH-HHHHHHHHCGGGT
T ss_pred HCHHHH------CCCHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHCHHHH
T ss_conf 688976------75589999999998653666079999999-9999998691868
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=349.42 Aligned_cols=544 Identities=11% Similarity=0.123 Sum_probs=346.1
Q ss_pred CHH---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 926---99999994069999998889999999999961966599999984238-8158999999999999973406----
Q 002789 1 MDD---LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYT---- 72 (881)
Q Consensus 1 m~~---l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~-~~~~vrffa~~~L~~~I~~~w~---- 72 (881)
|.+ +.+++....+| |++.| |+++|++++++|++|..+..++.+. .+.++|++|+++|++.|+++|.
T Consensus 1 M~d~~~l~~~L~~~~sp----d~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~ 74 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIA----STAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG 74 (960)
T ss_dssp CCHHHHHHHHHHHTTSG----GGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred CCCHHHHHHHHHHHCCC----CHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 97599999999976599----87899--9999998555998899999998657988889999999999999854887656
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CHHHH
Q ss_conf --899888999999999999853306888767788908999999999999998446888803499999720189-50589
Q 002789 73 --SMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVID 149 (881)
Q Consensus 73 --~l~~e~~~~lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~ 149 (881)
.++++++..||+.+++.+... ++.||+++|.+++.|+.++||.+||++++++++.++++ .....
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~-------------~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~ 141 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISL-------------PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNK 141 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHS-------------CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 78899899999999999999808-------------79999999999999998617130157999999984789889999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C-------HHHHHHHHHHHCC
Q ss_conf 999999999998631678998127999999999998886999999999999831029--9-------8899999987400
Q 002789 150 MFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSS--D-------FEVCTGVLDCMRR 220 (881)
Q Consensus 150 ~~L~iL~~l~eEi~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~--~-------~~l~~~~L~~l~~ 220 (881)
..|.+|..+.++... .. ++ ......++..++.. ++.+.++|..+....... + .+....+++++..
T Consensus 142 ~aL~~l~~i~~~~~~-~~-~~---~~~~~~l~~~l~~~-~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~ 215 (960)
T 1wa5_C 142 GVLTVAHSIFKRWRP-LF-RS---DELFLEIKLVLDVF-TAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYD 215 (960)
T ss_dssp HHHHHHHHHHGGGTT-SC-CC---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HH-CC---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999887-61-48---47789999999998-99999999999999873579879999999999999999999
Q ss_pred CCCCCCCCCCCC---CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC---CC
Q ss_conf 423321300026---240999999986079984577899999999995399914469899871011100345787---51
Q 002789 221 YISWIDINLIAN---DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSED---GE 294 (881)
Q Consensus 221 ~i~wi~~~~~~~---~~~l~~l~~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li~~l~l~~i~~~~~~~---~d 294 (881)
+.|.+...... ..+++.+.+.+. . . .+....+ ++
T Consensus 216 -l~~~~~~~~~~~~~~~~~~~~~~~l~---------------------~----------------~--~p~~~~d~d~~~ 255 (960)
T 1wa5_C 216 -FNCQDIPEFFEDNIQVGMGIFHKYLS---------------------Y----------------S--NPLLEDPDETEH 255 (960)
T ss_dssp -HHSSCCCHHHHHTHHHHHHHHHHHHS---------------------C----------------C--SCCCC------C
T ss_pred -HHHCCCHHHHHHHHHHHHHHHHHHHC---------------------C----------------C--CCCCCCCCCCCC
T ss_conf -86256559999989999999999976---------------------8----------------9--985557855331
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf ----7999999999999999999998530234415999999997898988650358-76425659898999999831589
Q 002789 295 ----SELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNC-EVDTTFSIVQFLSGYVATMKSLS 369 (881)
Q Consensus 295 ----~~~~~~la~l~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~v~~~~~~~~~~~w~~l~~~~ 369 (881)
......+++.++.+...+-+ ....++..+++.++..+... .....+.+.....+||..+.+..
T Consensus 256 ~~~~~~vk~~~~~~l~~l~~~~~~------------~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~ 323 (960)
T 1wa5_C 256 ASVLIKVKSSIQELVQLYTTRYED------------VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP 323 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCHH------------HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCH
T ss_conf 327999999999999999999899------------99999999999999999843777672899999999999996867
Q ss_pred CCCHHH--HHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 894788--99999999-999986435954545666678788-----4789999999999999999999309266999999
Q 002789 370 PLKEEQ--RLHAGQIL-EVILTQIRYDPMYRNNLDVLDKIG-----IEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIR 441 (881)
Q Consensus 370 ~l~~~~--~~~~~~Ll-~~l~~km~~p~~~~~~~~~~~~~~-----eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~ 441 (881)
...... .+++.+++ .+++..|.+++++.+. |.++.. +.|.+++...|+...++++.++...++.+++.+.
T Consensus 324 ~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~--w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l 401 (960)
T 1wa5_C 324 KYFEIFNNESAMNNITEQIILPNVTLREEDVEL--FEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFL 401 (960)
T ss_dssp HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTT--TTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH--HHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 689987685189999999968734888878998--844999999863575512371889999999999970132789999
Q ss_pred HHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHCC---CCHHHH-----CCCHHHHH-HHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9999950346---8898113989999999961118---603532-----10028999-9999870999998972589999
Q 002789 442 NSLANAVTFS---ADRNVEEVEAALTLLYALGESM---SEEAMR-----TGAGHLSE-LVPMLLQTKLPCHSNRLVALVY 509 (881)
Q Consensus 442 ~~l~~~l~~~---~~~~w~~~Eaal~~l~~i~e~~---~~~~~~-----~~~~~l~~-ll~~l~~~~~~~~~~~~V~~~~ 509 (881)
+.+.+.++++ ...+|+.+|||++++++++++. ...... +...++.. +++.+.+ +...||.|+..+
T Consensus 402 ~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~---~~~~~p~vr~~a 478 (960)
T 1wa5_C 402 AHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS---NNIPHIILRVDA 478 (960)
T ss_dssp HHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC---SSCSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCCCCEEHHHH
T ss_conf 99999998736696121799999999999999874125677412344356999999973787449---988883303989
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH-----------HHHCCHHHHHHHHHHHH
Q ss_conf 9999975988855588749999996402688899801246799999999998-----------43200046999999846
Q 002789 510 LETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-----------LKAKLVPFIENILQSLQ 578 (881)
Q Consensus 510 ~~~i~ry~~~l~~~~~~L~~vL~~~l~~~gl~~~~~~v~~~a~~~l~~l~~~-----------~~~~l~p~~~~il~~l~ 578 (881)
++++|||++|+ +++++.+++..++ .++.++++.|+.+||++|.+|++. ++..+.||++.|++.+.
T Consensus 479 ~~~lg~~~~~~--~~~~l~~~l~~l~--~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~ 554 (960)
T 1wa5_C 479 IKYIYTFRNQL--TKAQLIELMPILA--TFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI 554 (960)
T ss_dssp HHHHHHTGGGS--CHHHHHHHHHHHH--HHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--CHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999988658--9999999999999--9848997219999999999998443644466544359875646999999999
Q ss_pred HHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31202355-674433579952045799988787516899953068999986677999999999
Q 002789 579 DTIARFTS-MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTML 640 (881)
Q Consensus 579 ~~l~~~~~-p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~ 640 (881)
.++....+ |. ...+...++++++.++...+ +....|+..+++.+...|+...
T Consensus 555 ~ll~~~~~~~~-------~~~~~e~l~~al~~vv~~~~---~~~~p~~~~l~~~L~~~l~~~~ 607 (960)
T 1wa5_C 555 ALILKHGSSPE-------KLAENEFLMRSIFRVLQTSE---DSIQPLFPQLLAQFIEIVTIMA 607 (960)
T ss_dssp HHHHTTCCCHH-------HHTSCHHHHHHHHHHHHHHT---TTTGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99971467877-------64322799999999999888---8612479999999999999997
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=338.97 Aligned_cols=730 Identities=12% Similarity=0.115 Sum_probs=463.7
Q ss_pred HHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH--------
Q ss_conf 699999994-0699999988899999999999619--66599999984238-81589999999999999734--------
Q 002789 3 DLEKAILFS-FDESGAIDSMLKSQAVNFCQQIKET--PSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVK-------- 70 (881)
Q Consensus 3 ~l~~Av~~~-~~p~~~~~~~~r~~A~~~L~~~k~~--p~~w~~~~~ll~~~-~~~~vrffa~~~L~~~I~~~-------- 70 (881)
++.+++..+ ++| |++.|++|+++|++++++ |++|..+..++.++ .++.+|++|+++|++.|+++
T Consensus 5 ~l~~~L~~~~~s~----d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 5 EFAQLLENSILSP----DQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp HHHHHHHHHHHCS----SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred HHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999742693----979999999999999851999999999999837899867999999998702257574878999
Q ss_pred ---CCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHCCC-
Q ss_conf ---068-9988899999999999985330688876778890899999999999999844688-8803499999720189-
Q 002789 71 ---YTS-MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKG- 144 (881)
Q Consensus 71 ---w~~-l~~e~~~~lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~-~Wp~~i~~l~~~~~~~- 144 (881)
|.. ++++++..||+.+++.+... +..+|++++.+++.++.++||. .||++++.+++.++++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~~-------------~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~ 147 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVSI-------------EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ 147 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCS-------------SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 976766299999999999999987799-------------6379999999999999846764554999999999872689
Q ss_pred -CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf -5058999999999999863167899812799999999999888699999999999983102998899999987400423
Q 002789 145 -SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYIS 223 (881)
Q Consensus 145 -~~~~~~~L~iL~~l~eEi~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~ 223 (881)
+..++..++++..+.+++.... | .+.. ..+.++..+...+... ..++++...+++++..++.
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~---------~------~~~~-~~~~ll~~l~~~l~~~-~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQS---------Q------ALVS-SSNNILIAIVQGAQST-ETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTS---------S------TTGG-GHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHHCCCHHH---------H------HHHH-HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 78999999999999997278435---------6------7898-8999999999841579-9987899999999999999
Q ss_pred CCCCCCCCC---CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHCCCCCCCCCHHHH
Q ss_conf 321300026---2409999999860799845778999999999953999144698998--71011100345787517999
Q 002789 224 WIDINLIAN---DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQ--TLQISRVFGLVSEDGESELV 298 (881)
Q Consensus 224 wi~~~~~~~---~~~l~~l~~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li~--~l~l~~i~~~~~~~~d~~~~ 298 (881)
|++.++... +.+++.+...+. .+++.+|..+++|+..++.+. |..-...+. .+++ ++. ...+.|.+..
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~--~~~-~~~~~~~~vr 283 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKY--YTFMKPYMEQALYAL--TIA-TMKSPNDKVA 283 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHH--GGGCHHHHHHTHHHH--HHH-HTTCSSHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHH-HHCCCCHHHH
T ss_conf 999870676689999999999865--998899999999999999998--899999889999999--999-8737727899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHH
Q ss_conf 9999999999999999985302344159999999978989886503587642565989899999983158989-478899
Q 002789 299 SKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPL-KEEQRL 377 (881)
Q Consensus 299 ~~la~l~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l-~~~~~~ 377 (881)
.....++..++..... .. .... .+ + ..+.. ....++
T Consensus 284 ~~a~~~l~~l~~~~~~---------------------~~----~~~~--~~-~---------------~~~~~~~~~~~~ 320 (861)
T 2bpt_A 284 SMTVEFWSTICEEEID---------------------IA----YELA--QF-P---------------QSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHHHH---------------------HH----HHHH--HC-T---------------TCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------HH----HHHH--HC-C---------------CCCHHHHHHHHH
T ss_conf 9999999999987886---------------------43----3321--03-5---------------773256999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 99999999998643595454566667878847899999999999999999993092669999999999950346889811
Q 002789 378 HAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVE 457 (881)
Q Consensus 378 ~~~~Ll~~l~~km~~p~~~~~~~~~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~ 457 (881)
++..+++.++.+|..+++++ + ++ + ...|+...+++..++...++.+++.+.+.+.+.+++ .+|+
T Consensus 321 ~~~~il~~ll~~l~~~~~d~-------~-d~----~-~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~ 384 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDP-------E-DD----D-WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---DNWR 384 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC--------C-CC----C-CHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC---SSHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-------C-CC----C-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC---CCHH
T ss_conf 99889999999987066530-------1-24----6-868999999999999874086899999999987579---9726
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
Q ss_conf 398999999996111860353210028999999987099999897258999999999759888555---88749999996
Q 002789 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH---TQYIPVVLAAF 534 (881)
Q Consensus 458 ~~Eaal~~l~~i~e~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~~V~~~~~~~i~ry~~~l~~~---~~~L~~vL~~~ 534 (881)
.+++++.+++.+++++.... ....++.+++.++. ...++++.|+.+.++++|++++++..+ +++++.++..+
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~---~~~~l~~il~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l 459 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQ---RTYYVHQALPSILN--LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC 459 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHH---HHHHHHHHHHHHHH--GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999985998788---89989999999998--82899599999999999999987354048788899999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 40268889980124679999999999843----20004699999984631202355674433579952045799988787
Q 002789 535 LDERGIHHPNVHVSRRASYLFMRVVKLLK----AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLL 610 (881)
Q Consensus 535 l~~~gl~~~~~~v~~~a~~~l~~l~~~~~----~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~l 610 (881)
+ .++.++ ++|+..||+++..+++.|+ ..+.||++.++..+...+.... ...+-+...++++|.+
T Consensus 460 ~--~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d---------~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 460 L--IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID---------NEFNARASAFSALTTM 527 (861)
T ss_dssp H--HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC---------CGGGHHHHHHHHHHHH
T ss_pred H--HHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHH
T ss_conf 9--976447-289999999999999862313542468999999999999985758---------6158999999999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHH-HHHHHHHHHHHHCCCCCCCC--------
Q ss_conf 51689995306899998667799999999976420599----023568999-98999999773105689987--------
Q 002789 611 IGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNP----EESTAKFAN-IQQIIMAINALSKGFNERLV-------- 677 (881)
Q Consensus 611 i~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~----~e~~~~~~~-l~~~~~~~~~i~k~f~~~~~-------- 677 (881)
+...+ +....++..+++++++.|...+........ .+....... +..+..++..++..+.++..
T Consensus 528 ~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 604 (861)
T 2bpt_A 528 VEYAT---DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFR 604 (861)
T ss_dssp HHHCC---GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH
T ss_pred HHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99762---656999999999999999988753201388556777999999999999999998556347899999999999
Q ss_pred ----CCC-C-----------------CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf ----788-6-----------------618999999999999983229987468557999999989810702124479999
Q 002789 678 ----TSS-R-----------------PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKAL 735 (881)
Q Consensus 678 ----~~~-~-----------------~~~~~if~~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~i~~l~~~~~p~lp~~~ 735 (881)
..+ . ..+.+.+.++++.+...+. .++..+|..+..++..++..+|..+.||++.++
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~ 682 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN--QVDSPVSITAVGFIADISNSLEEDFRRYSDAMM 682 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHH
T ss_conf 974678875799999999999999766099999999999998865--566789999999999999874540311199999
Q ss_pred HHHHCCCC-----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHH
Q ss_conf 99970599-----45699999999999998220059876555899999997305688888999999988988-9999999
Q 002789 736 EQLLAESE-----PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIRE-VQELQRT 809 (881)
Q Consensus 736 ~~ll~~~~-----~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~dl~~~ 809 (881)
+.++..+. ...-..++..++.++..+|..+.+++..++++++.. +.... + .+.++..+ ...+|.+
T Consensus 683 ~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~----~~~~~---~--~~d~d~~~~~~~vr~~ 753 (861)
T 2bpt_A 683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA----QNTKP---E--NGTLEALDYQIKVLEA 753 (861)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH----HTCCC---S--SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCC---C--CCCHHHHHHHHHHHHH
T ss_conf 9999972786556766599999999999984050899999999999999----73678---9--9975889999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHHHHHH
Q ss_conf 9999999995589611026777378699999999851379--9-821012766777898873
Q 002789 810 LYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNH--K-DYLVRKVCYFLGFFSTLH 868 (881)
Q Consensus 810 ~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~--~-d~~~~k~~~~~~~~~~~~ 868 (881)
.+..+..++..- ... +..-.++++.++..+.....+. + |..+.++|+ +.+..+.
T Consensus 754 ~l~~~~~i~~~l-~~~--~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~--~~l~~l~ 810 (861)
T 2bpt_A 754 VLDAYVGIVAGL-HDK--PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAV--GLIGDIA 810 (861)
T ss_dssp HHHHHHHHHHHT-TTC--HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHH-CCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH--HHHHHHH
T ss_conf 999999999998-267--78899999999999999874855578699999999--9999999
Done!