BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002790
(881 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 317 YGKHGDVKVAQNLFS---EIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSME 373
Y K GD A + E++ N +W L +Y + G DEA+E + + +LD + E
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Query: 374 RPNVISWSAVIGAFASNGRGEEALDLFRK 402
+W + A+ G +EA++ ++K
Sbjct: 79 -----AWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDL 399
+W L +Y + G DEA+E + + +LD + E +W + A+ G +EA++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-----AWYNLGNAYYKQGDYDEAIEY 65
Query: 400 FRK 402
++K
Sbjct: 66 YQK 68
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 317 YGKHGDVKVAQNLFS---EIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSME 373
Y K GD A + E++ N +W L +Y + G DEA+E + + +LD + E
Sbjct: 53 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 317 YGKHGDVKVAQNLFS---EIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSME 373
Y K GD A + E++ ++ +W L +Y + G DEA+E + + +LD S E
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 374 RPNVISWSAVIGAFASNGRGEEALDLFRK 402
+W + A+ G +EA++ ++K
Sbjct: 71 -----AWYNLGNAYYKQGDYDEAIEYYQK 94
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 317 YGKHGDVKVAQNLFS---EIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSME 373
Y K GD A + E++ ++ +W L +Y + G DEA+E + + +LD S E
Sbjct: 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
Query: 374 RPNVISWSAVIGAFASNGRGEEALDLFRK 402
+W + A+ G +EA++ ++K
Sbjct: 105 -----AWYNLGNAYYKQGDYDEAIEYYQK 128
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDL 399
+W L +Y + G DEA+E + + +LD S E +W + A+ G +EA++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-----AWYNLGNAYYKQGDYDEAIEY 57
Query: 400 FRK 402
++K
Sbjct: 58 YQK 60
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDL 399
+W L +Y + G DEA+E + + +LD S E +W + A+ G +EA++
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-----AWYNLGNAYYKQGDYDEAIEY 59
Query: 400 FRK 402
++K
Sbjct: 60 YQK 62
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDL 399
+W L +Y + G DEA+E + + +LD + E +W + A+ G +EA++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-----AWYNLGNAYYKQGDYDEAIEY 65
Query: 400 FRK 402
++K
Sbjct: 66 YQK 68
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 317 YGKHGDVKVAQNLFS---EIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSME 373
Y K GD A + E++ N +W L +Y + G DEA+E + + +LD + E
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
>pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|3U3W|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
pdb|3U3W|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
Length = 293
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 424 ESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK 476
E L + + ++ + + + +N+ ++N + N+Y + G L++G +FEQI K+
Sbjct: 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 286 AADHMGKVIHGF-VIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNAL 344
A D G VI G I+ F + + + +C Y HG V + + E+++ A+
Sbjct: 105 ADDPAGPVIQGIKFIREKFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAV 164
Query: 345 ITSYAEAG 352
+YA+AG
Sbjct: 165 AVNYAKAG 172
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces
Cerevisiae
Length = 340
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 286 AADHMGKVIHGF-VIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNAL 344
A D G VI G I+ F + + + +C Y HG V + + E+++ A+
Sbjct: 105 ADDPAGPVIQGIRFIREKFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAV 164
Query: 345 ITSYAEAG 352
+YA+AG
Sbjct: 165 AVNYAKAG 172
>pdb|3CHJ|A Chain A, Crystal Structure Of Alpha-14 Giardin
pdb|3CHK|A Chain A, Calcium Bound Structure Of Alpha-14 Giardin
pdb|3CHL|A Chain A, Crystal Structure Of Alpha-14 Giardin With Magnesium Bound
Length = 337
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 12/69 (17%)
Query: 632 EDAAKVRISAKTKGLKKVAGQSWIEV--------KRKIH-MFSS---GNSLQSDLKNVCE 679
ED VR + +TKG+KK +WI + R++H M+S+ G+SL++ +++ +
Sbjct: 167 EDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGVEDEFQ 226
Query: 680 VLEELALQM 688
L+E A ++
Sbjct: 227 GLDEYAFKL 235
>pdb|3E7E|A Chain A, Structure And Substrate Recruitment Of The Human Spindle
Checkpoint Kinase Bub
Length = 365
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 544 RIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNT 597
R++P M+H M A L Q S +V + Y +GTLLN+ ++KNT
Sbjct: 120 RLKPSMQH---MFMKFYSAHLFQNGSVLVGEL------YSYGTLLNAINLYKNT 164
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 317 YGKHGDVKVAQNLFS---EIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSME 373
Y K GD + A + E++ N +W L +Y + G +A+E + + +LD
Sbjct: 19 YYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN--- 75
Query: 374 RPNVISWSAVIGAFASNGRGEEALDLFRK 402
N +W A+ G ++A++ ++K
Sbjct: 76 --NAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,855,299
Number of Sequences: 62578
Number of extensions: 925426
Number of successful extensions: 1984
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 24
length of query: 881
length of database: 14,973,337
effective HSP length: 107
effective length of query: 774
effective length of database: 8,277,491
effective search space: 6406778034
effective search space used: 6406778034
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)