Query 002790
Match_columns 881
No_of_seqs 792 out of 4408
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:11:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.3E-92 7.1E-97 862.9 76.6 687 31-746 86-806 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3.3E-78 7.3E-83 722.2 64.7 557 95-744 85-642 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.9E-71 4E-76 679.9 61.2 674 31-734 51-773 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.5E-63 5.4E-68 595.6 66.9 513 128-651 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.1E-63 6.6E-68 594.9 61.5 512 42-575 384-906 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-56 2.4E-61 536.8 49.1 453 39-510 98-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-31 5.9E-36 331.2 72.3 579 43-642 310-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.7E-30 1.5E-34 318.6 71.1 557 69-646 301-868 (899)
9 PRK11447 cellulose synthase su 99.9 6.2E-21 1.4E-25 239.9 68.5 580 48-648 48-745 (1157)
10 PRK11447 cellulose synthase su 99.9 3.9E-21 8.5E-26 241.7 62.7 557 66-645 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 2E-18 4.3E-23 207.5 62.2 550 63-645 78-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 5.9E-18 1.3E-22 203.4 62.2 560 59-646 107-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.8E-18 6.2E-23 182.3 38.0 281 340-633 220-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.8 3.2E-18 6.9E-23 181.9 30.0 282 350-644 196-485 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 5.3E-16 1.1E-20 183.6 46.5 250 390-644 307-571 (615)
16 PRK11788 tetratricopeptide rep 99.8 2.6E-17 5.6E-22 184.5 33.3 267 379-651 71-354 (389)
17 PRK11788 tetratricopeptide rep 99.8 6.9E-17 1.5E-21 181.1 33.3 300 210-549 43-353 (389)
18 KOG2002 TPR-containing nuclear 99.8 1E-14 2.2E-19 164.1 47.2 538 79-645 146-746 (1018)
19 PRK10049 pgaA outer membrane p 99.8 9.5E-15 2.1E-19 176.1 47.0 389 210-644 23-456 (765)
20 PRK15174 Vi polysaccharide exp 99.8 3.1E-15 6.8E-20 176.4 40.6 346 240-644 45-403 (656)
21 PRK15174 Vi polysaccharide exp 99.8 5.8E-15 1.3E-19 174.2 41.6 322 312-645 47-382 (656)
22 KOG2076 RNA polymerase III tra 99.8 3.3E-13 7.1E-18 151.3 51.3 561 73-644 149-849 (895)
23 TIGR00990 3a0801s09 mitochondr 99.8 3.4E-14 7.4E-19 168.2 46.8 444 174-642 130-595 (615)
24 KOG2002 TPR-containing nuclear 99.7 2.8E-13 6E-18 152.7 50.2 556 74-647 175-801 (1018)
25 PRK14574 hmsH outer membrane p 99.7 1.4E-13 3.1E-18 162.6 50.6 419 180-644 43-513 (822)
26 PRK10049 pgaA outer membrane p 99.7 7.3E-14 1.6E-18 168.4 48.8 161 454-617 279-463 (765)
27 KOG4422 Uncharacterized conser 99.7 5E-13 1.1E-17 137.2 44.4 410 41-508 128-591 (625)
28 PRK14574 hmsH outer membrane p 99.7 7.1E-13 1.5E-17 156.8 49.6 166 449-617 329-520 (822)
29 KOG4422 Uncharacterized conser 99.7 3.7E-13 8.1E-18 138.1 40.6 446 96-575 115-587 (625)
30 KOG0495 HAT repeat protein [RN 99.7 6.2E-11 1.3E-15 128.1 51.2 467 179-661 414-895 (913)
31 KOG4318 Bicoid mRNA stability 99.6 1.2E-12 2.7E-17 145.6 38.3 257 48-322 10-286 (1088)
32 KOG2003 TPR repeat-containing 99.6 6.4E-13 1.4E-17 136.9 29.0 478 100-639 204-717 (840)
33 KOG2076 RNA polymerase III tra 99.6 8.4E-10 1.8E-14 124.4 49.8 589 42-640 153-891 (895)
34 KOG0495 HAT repeat protein [RN 99.5 4.9E-09 1.1E-13 113.7 50.9 509 83-623 366-893 (913)
35 KOG4318 Bicoid mRNA stability 99.5 3.7E-10 8E-15 126.3 38.8 128 517-648 463-598 (1088)
36 KOG1915 Cell cycle control pro 99.5 1.9E-08 4.1E-13 105.4 46.0 510 94-643 70-624 (677)
37 KOG2003 TPR repeat-containing 99.5 9.8E-10 2.1E-14 113.8 36.3 442 64-525 202-706 (840)
38 PF13429 TPR_15: Tetratricopep 99.4 3.3E-13 7.1E-18 143.5 9.5 257 382-643 13-276 (280)
39 KOG1155 Anaphase-promoting com 99.4 3.8E-09 8.1E-14 110.6 37.8 284 346-641 235-533 (559)
40 PRK10747 putative protoheme IX 99.4 1.1E-09 2.4E-14 122.0 34.5 276 320-609 97-389 (398)
41 TIGR00540 hemY_coli hemY prote 99.4 2E-09 4.3E-14 120.7 34.9 279 319-609 96-398 (409)
42 PRK10747 putative protoheme IX 99.3 1E-09 2.2E-14 122.3 31.2 251 314-575 125-387 (398)
43 KOG0547 Translocase of outer m 99.3 2.3E-09 5E-14 112.8 30.7 213 425-643 339-565 (606)
44 KOG1126 DNA-binding cell divis 99.3 2.2E-10 4.8E-15 125.3 23.7 277 353-644 334-620 (638)
45 KOG1915 Cell cycle control pro 99.3 8.4E-08 1.8E-12 100.7 41.0 445 145-643 86-584 (677)
46 KOG2047 mRNA splicing factor [ 99.3 3.8E-06 8.3E-11 91.8 53.1 540 58-643 76-686 (835)
47 KOG1155 Anaphase-promoting com 99.3 1.1E-08 2.4E-13 107.2 31.8 325 303-643 160-494 (559)
48 TIGR00540 hemY_coli hemY prote 99.3 5.2E-09 1.1E-13 117.3 32.1 257 311-575 122-396 (409)
49 KOG1173 Anaphase-promoting com 99.3 2.9E-08 6.4E-13 106.7 35.0 262 376-643 243-517 (611)
50 PF13429 TPR_15: Tetratricopep 99.2 7.1E-11 1.5E-15 125.6 13.3 255 244-540 15-275 (280)
51 TIGR02521 type_IV_pilW type IV 99.2 2.5E-09 5.4E-14 109.9 24.5 197 446-643 30-231 (234)
52 KOG1126 DNA-binding cell divis 99.2 1.9E-09 4.1E-14 118.2 23.1 246 392-644 334-586 (638)
53 COG3071 HemY Uncharacterized e 99.2 5.4E-08 1.2E-12 100.9 32.1 280 320-610 97-390 (400)
54 KOG2047 mRNA splicing factor [ 99.2 4.9E-06 1.1E-10 90.9 48.1 305 55-368 130-507 (835)
55 KOG1840 Kinesin light chain [C 99.2 2.9E-08 6.4E-13 110.2 29.6 231 378-642 200-477 (508)
56 COG2956 Predicted N-acetylgluc 99.1 5.9E-08 1.3E-12 97.5 28.0 288 216-540 49-345 (389)
57 KOG0547 Translocase of outer m 99.1 3.5E-08 7.6E-13 104.1 27.1 56 71-126 123-178 (606)
58 KOG4162 Predicted calmodulin-b 99.1 2E-06 4.4E-11 96.1 40.6 428 158-644 310-783 (799)
59 COG3071 HemY Uncharacterized e 99.1 2.4E-07 5.1E-12 96.2 30.9 252 312-575 123-387 (400)
60 KOG1173 Anaphase-promoting com 99.1 6.3E-07 1.4E-11 96.7 34.9 280 304-594 241-535 (611)
61 KOG1174 Anaphase-promoting com 99.1 1.3E-06 2.8E-11 90.5 35.0 393 171-615 97-505 (564)
62 PF13041 PPR_2: PPR repeat fam 99.1 3.4E-10 7.4E-15 84.8 6.7 49 235-283 1-49 (50)
63 KOG2376 Signal recognition par 99.1 1.4E-06 3.1E-11 94.5 36.5 181 451-639 313-515 (652)
64 PF13041 PPR_2: PPR repeat fam 99.1 3.8E-10 8.2E-15 84.6 6.4 50 375-424 1-50 (50)
65 KOG3785 Uncharacterized conser 99.0 3.1E-06 6.8E-11 85.9 35.5 435 181-645 32-491 (557)
66 COG2956 Predicted N-acetylgluc 99.0 2.9E-07 6.2E-12 92.7 26.9 283 320-651 48-354 (389)
67 KOG0985 Vesicle coat protein c 99.0 0.0002 4.3E-09 82.2 51.4 143 478-641 1104-1246(1666)
68 KOG1156 N-terminal acetyltrans 99.0 4.3E-05 9.3E-10 84.2 43.6 452 100-607 11-508 (700)
69 KOG4162 Predicted calmodulin-b 99.0 3.2E-06 6.9E-11 94.6 35.3 206 57-262 317-538 (799)
70 PRK12370 invasion protein regu 99.0 3.3E-07 7.1E-12 106.9 29.2 210 428-645 320-536 (553)
71 KOG3616 Selective LIM binding 98.9 1.2E-05 2.5E-10 88.7 37.7 438 75-605 456-932 (1636)
72 PRK11189 lipoprotein NlpI; Pro 98.9 1.4E-07 3.1E-12 100.6 23.2 211 426-645 40-266 (296)
73 TIGR02521 type_IV_pilW type IV 98.9 2.9E-07 6.4E-12 94.4 24.8 88 484-574 141-228 (234)
74 KOG3785 Uncharacterized conser 98.9 3E-06 6.6E-11 86.0 29.9 442 73-584 32-497 (557)
75 PRK12370 invasion protein regu 98.9 2.1E-07 4.5E-12 108.5 25.0 179 460-644 317-502 (553)
76 KOG1840 Kinesin light chain [C 98.9 4.1E-07 8.8E-12 101.3 25.8 95 515-609 369-478 (508)
77 PF12569 NARP1: NMDA receptor- 98.9 1.1E-05 2.4E-10 91.1 37.4 282 179-474 12-332 (517)
78 KOG1129 TPR repeat-containing 98.9 6.2E-08 1.4E-12 97.1 15.1 230 342-645 227-459 (478)
79 KOG1129 TPR repeat-containing 98.8 1.5E-07 3.3E-12 94.4 17.3 190 450-645 226-425 (478)
80 KOG3616 Selective LIM binding 98.8 0.00012 2.7E-09 80.9 40.7 340 174-575 592-934 (1636)
81 KOG0624 dsRNA-activated protei 98.8 3.2E-05 7E-10 78.5 33.7 378 173-698 40-427 (504)
82 KOG1156 N-terminal acetyltrans 98.8 0.00013 2.8E-09 80.5 40.3 442 144-642 19-509 (700)
83 KOG1127 TPR repeat-containing 98.8 0.00013 2.9E-09 83.9 41.6 567 48-642 476-1102(1238)
84 COG3063 PilF Tfp pilus assembl 98.8 3.8E-07 8.2E-12 87.9 18.0 162 480-646 37-204 (250)
85 KOG1174 Anaphase-promoting com 98.8 0.00012 2.7E-09 76.3 36.4 302 349-689 207-519 (564)
86 KOG0624 dsRNA-activated protei 98.8 3.5E-05 7.5E-10 78.3 31.7 309 306-645 37-371 (504)
87 KOG0985 Vesicle coat protein c 98.8 0.0011 2.5E-08 76.3 48.5 179 446-628 1103-1326(1666)
88 KOG2376 Signal recognition par 98.8 6.3E-05 1.4E-09 82.1 35.1 177 70-264 19-202 (652)
89 PF12569 NARP1: NMDA receptor- 98.7 1.7E-05 3.6E-10 89.7 31.8 298 315-643 12-333 (517)
90 KOG3617 WD40 and TPR repeat-co 98.7 5.5E-05 1.2E-09 84.8 34.3 58 62-124 725-784 (1416)
91 PRK11189 lipoprotein NlpI; Pro 98.7 9.4E-06 2E-10 86.6 26.7 164 446-616 97-271 (296)
92 KOG0548 Molecular co-chaperone 98.7 5.8E-05 1.3E-09 81.7 31.4 415 180-645 11-456 (539)
93 PF04733 Coatomer_E: Coatomer 98.6 1.5E-06 3.2E-11 91.5 17.6 147 488-643 112-264 (290)
94 KOG1127 TPR repeat-containing 98.6 0.00013 2.7E-09 84.1 33.4 173 464-641 800-993 (1238)
95 KOG1914 mRNA cleavage and poly 98.6 0.0013 2.8E-08 71.4 38.0 172 393-565 347-526 (656)
96 KOG4340 Uncharacterized conser 98.6 3E-05 6.5E-10 77.3 23.9 410 174-644 13-443 (459)
97 COG3063 PilF Tfp pilus assembl 98.6 1.4E-05 3E-10 77.3 21.1 192 451-643 39-235 (250)
98 PRK04841 transcriptional regul 98.6 0.0033 7.1E-08 78.9 48.9 331 315-645 382-761 (903)
99 cd05804 StaR_like StaR_like; a 98.5 0.00017 3.6E-09 79.7 32.7 197 449-645 116-337 (355)
100 PF04733 Coatomer_E: Coatomer 98.5 3.8E-06 8.2E-11 88.5 17.9 155 454-615 109-270 (290)
101 PRK04841 transcriptional regul 98.5 0.0069 1.5E-07 76.0 49.2 263 177-439 347-639 (903)
102 KOG3617 WD40 and TPR repeat-co 98.5 0.00043 9.3E-09 77.9 32.9 251 76-365 813-1107(1416)
103 KOG4340 Uncharacterized conser 98.5 0.00016 3.4E-09 72.3 25.8 196 64-269 11-210 (459)
104 cd05804 StaR_like StaR_like; a 98.4 0.00039 8.4E-09 76.8 31.6 292 309-610 8-336 (355)
105 TIGR03302 OM_YfiO outer membra 98.4 2.4E-05 5.1E-10 80.8 19.4 179 446-644 32-232 (235)
106 PF12854 PPR_1: PPR repeat 98.4 4E-07 8.7E-12 61.3 3.9 34 231-264 1-34 (34)
107 KOG1125 TPR repeat-containing 98.4 1.6E-05 3.4E-10 86.6 17.4 195 448-644 320-527 (579)
108 KOG1070 rRNA processing protei 98.3 0.00011 2.4E-09 87.2 24.0 199 446-648 1457-1667(1710)
109 PF12854 PPR_1: PPR repeat 98.3 9.3E-07 2E-11 59.5 4.1 34 165-198 1-34 (34)
110 KOG1914 mRNA cleavage and poly 98.3 0.011 2.3E-07 64.5 39.2 160 479-641 367-536 (656)
111 PRK10370 formate-dependent nit 98.3 4.9E-05 1.1E-09 75.5 18.2 117 526-645 52-174 (198)
112 KOG0548 Molecular co-chaperone 98.2 0.0019 4.2E-08 70.2 29.6 101 74-181 13-114 (539)
113 PRK15179 Vi polysaccharide bio 98.2 7.9E-05 1.7E-09 87.5 21.1 139 477-620 85-227 (694)
114 PRK15359 type III secretion sy 98.2 2E-05 4.3E-10 74.1 12.7 93 552-644 27-121 (144)
115 PRK15359 type III secretion sy 98.2 4.5E-05 9.8E-10 71.7 15.1 122 499-627 14-138 (144)
116 KOG1125 TPR repeat-containing 98.2 0.00012 2.6E-09 79.9 18.8 217 315-540 293-525 (579)
117 KOG1128 Uncharacterized conser 98.1 9.7E-05 2.1E-09 82.6 18.0 211 416-645 402-617 (777)
118 KOG1128 Uncharacterized conser 98.1 0.00025 5.3E-09 79.5 19.1 82 310-402 401-482 (777)
119 KOG1070 rRNA processing protei 98.1 0.00091 2E-08 79.8 24.5 220 304-530 1455-1688(1710)
120 TIGR03302 OM_YfiO outer membra 98.0 0.00028 6.1E-09 72.8 18.6 182 410-612 31-234 (235)
121 COG4783 Putative Zn-dependent 98.0 0.002 4.3E-08 69.6 24.0 119 522-643 315-436 (484)
122 TIGR02552 LcrH_SycD type III s 98.0 8.7E-05 1.9E-09 69.0 12.6 102 544-645 11-115 (135)
123 PLN02789 farnesyltranstransfer 98.0 0.0016 3.5E-08 69.6 23.2 182 456-641 80-299 (320)
124 PRK15179 Vi polysaccharide bio 98.0 0.0012 2.5E-08 77.9 23.7 142 442-588 81-229 (694)
125 PRK15363 pathogenicity island 97.9 0.00012 2.7E-09 67.7 11.9 96 549-644 35-132 (157)
126 PRK14720 transcript cleavage f 97.9 0.0016 3.5E-08 77.4 23.7 57 449-506 118-177 (906)
127 KOG3081 Vesicle coat complex C 97.9 0.0072 1.6E-07 60.2 23.4 155 454-615 115-276 (299)
128 COG4783 Putative Zn-dependent 97.9 0.0023 4.9E-08 69.1 21.4 137 487-645 315-455 (484)
129 KOG3060 Uncharacterized conser 97.8 0.004 8.6E-08 61.5 20.7 167 450-619 55-229 (289)
130 COG5010 TadD Flp pilus assembl 97.8 0.00058 1.3E-08 67.9 15.3 134 510-645 63-198 (257)
131 PLN02789 farnesyltranstransfer 97.8 0.002 4.3E-08 68.9 20.7 184 456-643 46-249 (320)
132 KOG2053 Mitochondrial inherita 97.8 0.13 2.9E-06 59.7 43.1 159 481-642 439-606 (932)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00039 8.5E-09 75.7 14.9 121 517-642 173-295 (395)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00066 1.4E-08 74.0 16.3 128 448-579 170-298 (395)
135 COG5010 TadD Flp pilus assembl 97.8 0.0033 7.3E-08 62.6 19.3 117 519-637 106-224 (257)
136 PRK10370 formate-dependent nit 97.8 0.0028 6E-08 63.1 19.1 153 454-618 23-181 (198)
137 TIGR00756 PPR pentatricopeptid 97.7 4.5E-05 9.7E-10 51.9 4.2 33 480-512 2-34 (35)
138 TIGR00756 PPR pentatricopeptid 97.7 5.4E-05 1.2E-09 51.5 4.3 35 98-132 1-35 (35)
139 PRK14720 transcript cleavage f 97.7 0.016 3.6E-07 69.1 27.4 59 378-438 117-175 (906)
140 KOG3081 Vesicle coat complex C 97.7 0.0055 1.2E-07 61.0 19.3 243 384-642 15-269 (299)
141 KOG3060 Uncharacterized conser 97.7 0.032 6.9E-07 55.3 23.9 185 215-442 25-221 (289)
142 TIGR02552 LcrH_SycD type III s 97.6 0.0011 2.5E-08 61.5 13.8 112 500-616 5-120 (135)
143 PF09976 TPR_21: Tetratricopep 97.6 0.0019 4.1E-08 60.9 15.2 115 526-641 24-144 (145)
144 PF13812 PPR_3: Pentatricopept 97.6 9.6E-05 2.1E-09 49.9 4.2 33 98-130 2-34 (34)
145 PF13812 PPR_3: Pentatricopept 97.6 0.00011 2.3E-09 49.7 4.3 33 479-511 2-34 (34)
146 cd00189 TPR Tetratricopeptide 97.5 0.00083 1.8E-08 57.0 10.6 93 552-644 3-97 (100)
147 PF12895 Apc3: Anaphase-promot 97.5 0.00018 4E-09 60.5 5.1 77 563-640 3-83 (84)
148 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0016 3.5E-08 58.7 11.4 94 551-644 4-105 (119)
149 PF09976 TPR_21: Tetratricopep 97.4 0.0086 1.9E-07 56.3 16.1 123 481-607 15-144 (145)
150 KOG0550 Molecular chaperone (D 97.4 0.0074 1.6E-07 63.6 16.5 267 346-645 57-351 (486)
151 PF13414 TPR_11: TPR repeat; P 97.4 0.00057 1.2E-08 55.0 6.8 64 580-643 2-66 (69)
152 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0037 8E-08 56.3 12.7 104 516-619 5-114 (119)
153 KOG2053 Mitochondrial inherita 97.3 0.62 1.3E-05 54.5 45.5 211 48-267 30-256 (932)
154 PF04840 Vps16_C: Vps16, C-ter 97.2 0.17 3.8E-06 54.0 25.5 110 514-640 178-287 (319)
155 PF01535 PPR: PPR repeat; Int 97.2 0.00036 7.9E-09 45.8 3.4 29 204-232 2-30 (31)
156 PLN03088 SGT1, suppressor of 97.2 0.0049 1.1E-07 67.5 14.0 95 522-619 11-108 (356)
157 KOG1130 Predicted G-alpha GTPa 97.2 0.0036 7.7E-08 65.6 11.9 129 515-643 197-343 (639)
158 PF01535 PPR: PPR repeat; Int 97.2 0.00042 9E-09 45.5 3.5 31 98-128 1-31 (31)
159 PF07079 DUF1347: Protein of u 97.2 0.47 1E-05 51.2 36.6 189 448-641 299-521 (549)
160 PF13432 TPR_16: Tetratricopep 97.2 0.0012 2.5E-08 52.4 6.6 58 587-644 3-60 (65)
161 PF10037 MRP-S27: Mitochondria 97.1 0.0039 8.4E-08 68.4 12.1 118 168-285 63-186 (429)
162 PRK02603 photosystem I assembl 97.1 0.005 1.1E-07 59.9 11.9 81 550-630 36-121 (172)
163 CHL00033 ycf3 photosystem I as 97.1 0.0047 1E-07 59.9 11.2 93 549-641 35-139 (168)
164 PRK15331 chaperone protein Sic 97.1 0.0065 1.4E-07 56.8 11.2 100 544-643 31-133 (165)
165 PF14938 SNAP: Soluble NSF att 97.1 0.21 4.6E-06 52.8 24.5 94 480-576 157-264 (282)
166 KOG0553 TPR repeat-containing 97.1 0.005 1.1E-07 62.6 11.1 99 523-624 91-192 (304)
167 PF07079 DUF1347: Protein of u 97.0 0.69 1.5E-05 50.0 37.6 126 456-586 388-530 (549)
168 PLN03088 SGT1, suppressor of 97.0 0.01 2.2E-07 65.0 13.9 103 485-591 9-113 (356)
169 PRK10153 DNA-binding transcrip 97.0 0.026 5.7E-07 64.6 17.4 137 477-615 336-487 (517)
170 cd00189 TPR Tetratricopeptide 96.9 0.0091 2E-07 50.4 10.6 58 482-540 4-61 (100)
171 PF08579 RPM2: Mitochondrial r 96.9 0.0083 1.8E-07 51.8 9.4 77 207-283 30-115 (120)
172 KOG1538 Uncharacterized conser 96.9 0.1 2.3E-06 58.0 20.1 95 234-333 553-658 (1081)
173 PRK10153 DNA-binding transcrip 96.9 0.031 6.7E-07 64.0 16.7 135 507-645 331-483 (517)
174 PF08579 RPM2: Mitochondrial r 96.8 0.015 3.2E-07 50.3 10.4 77 383-459 31-116 (120)
175 PF12895 Apc3: Anaphase-promot 96.8 0.0035 7.6E-08 52.7 6.8 80 491-574 2-83 (84)
176 PRK02603 photosystem I assembl 96.8 0.035 7.6E-07 53.9 14.8 129 477-629 34-165 (172)
177 KOG2280 Vacuolar assembly/sort 96.8 1.4 3.1E-05 50.6 32.2 116 508-639 679-794 (829)
178 PF14559 TPR_19: Tetratricopep 96.8 0.0019 4.2E-08 51.6 4.7 53 592-644 2-54 (68)
179 KOG0553 TPR repeat-containing 96.8 0.012 2.6E-07 59.9 11.2 100 487-590 90-191 (304)
180 PF06239 ECSIT: Evolutionarily 96.8 0.0075 1.6E-07 58.7 9.2 51 199-249 44-99 (228)
181 PF14938 SNAP: Soluble NSF att 96.8 0.4 8.8E-06 50.7 23.4 144 454-609 101-265 (282)
182 COG4235 Cytochrome c biogenesi 96.8 0.014 3E-07 59.8 11.5 101 546-646 152-258 (287)
183 PF05843 Suf: Suppressor of fo 96.8 0.05 1.1E-06 57.4 16.3 134 479-615 2-141 (280)
184 PF13371 TPR_9: Tetratricopept 96.7 0.0046 1E-07 50.2 6.6 58 588-645 2-59 (73)
185 PF13432 TPR_16: Tetratricopep 96.6 0.008 1.7E-07 47.5 7.1 61 555-615 3-65 (65)
186 PF10037 MRP-S27: Mitochondria 96.6 0.02 4.2E-07 63.0 12.0 118 304-425 63-186 (429)
187 PF04840 Vps16_C: Vps16, C-ter 96.6 1.4 3E-05 47.2 29.3 122 450-591 180-301 (319)
188 PRK15363 pathogenicity island 96.6 0.046 9.9E-07 51.0 12.5 84 486-573 43-127 (157)
189 PRK10866 outer membrane biogen 96.5 0.61 1.3E-05 48.0 21.7 57 344-406 38-98 (243)
190 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.7 3.7E-05 46.9 31.2 95 48-146 29-123 (660)
191 PRK10866 outer membrane biogen 96.5 0.29 6.3E-06 50.4 19.1 193 62-263 31-238 (243)
192 CHL00033 ycf3 photosystem I as 96.4 0.054 1.2E-06 52.4 12.6 79 479-560 36-117 (168)
193 PF06239 ECSIT: Evolutionarily 96.3 0.03 6.5E-07 54.6 10.2 97 467-564 34-153 (228)
194 PF13281 DUF4071: Domain of un 96.3 0.22 4.7E-06 53.8 17.7 159 452-613 146-337 (374)
195 PF05843 Suf: Suppressor of fo 96.3 0.029 6.4E-07 59.2 11.3 129 514-644 2-136 (280)
196 PF12688 TPR_5: Tetratrico pep 96.3 0.052 1.1E-06 48.7 11.1 87 556-642 8-102 (120)
197 PF14559 TPR_19: Tetratricopep 96.2 0.0079 1.7E-07 48.0 4.9 61 524-587 2-64 (68)
198 PF14432 DYW_deaminase: DYW fa 96.2 0.0051 1.1E-07 54.9 4.0 75 651-744 2-76 (116)
199 PF13431 TPR_17: Tetratricopep 96.2 0.0038 8.2E-08 41.9 2.3 32 604-635 2-33 (34)
200 KOG2041 WD40 repeat protein [G 96.1 3.5 7.5E-05 47.0 32.1 155 184-363 747-903 (1189)
201 PF09205 DUF1955: Domain of un 96.1 0.37 8.1E-06 42.9 14.7 140 489-647 13-152 (161)
202 PF13414 TPR_11: TPR repeat; P 96.1 0.014 3.1E-07 46.7 5.9 64 549-612 3-69 (69)
203 COG4700 Uncharacterized protei 96.1 0.68 1.5E-05 44.0 17.3 131 509-644 85-222 (251)
204 PRK10803 tol-pal system protei 96.1 0.041 8.8E-07 57.1 10.6 85 560-644 154-246 (263)
205 PF12688 TPR_5: Tetratrico pep 96.1 0.12 2.7E-06 46.3 12.2 91 484-574 7-100 (120)
206 COG4700 Uncharacterized protei 96.1 0.99 2.1E-05 42.9 18.0 99 409-507 86-189 (251)
207 KOG2114 Vacuolar assembly/sort 96.0 2.5 5.3E-05 49.4 24.4 176 65-264 336-517 (933)
208 KOG2280 Vacuolar assembly/sort 96.0 4.4 9.5E-05 46.8 34.5 109 449-573 686-794 (829)
209 KOG0550 Molecular chaperone (D 95.9 0.27 5.8E-06 52.4 15.1 267 316-613 58-353 (486)
210 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.037 8E-07 60.3 9.1 63 581-643 75-140 (453)
211 KOG1538 Uncharacterized conser 95.8 0.56 1.2E-05 52.5 17.9 89 60-151 553-651 (1081)
212 KOG1258 mRNA processing protei 95.8 4.6 0.0001 45.6 35.3 412 203-632 46-492 (577)
213 PF13424 TPR_12: Tetratricopep 95.8 0.019 4.1E-07 47.3 5.3 61 583-643 7-74 (78)
214 PF13525 YfiO: Outer membrane 95.7 1.2 2.5E-05 44.6 18.9 61 344-406 11-71 (203)
215 PF03704 BTAD: Bacterial trans 95.6 0.24 5.1E-06 46.5 12.8 62 582-643 63-124 (146)
216 COG4235 Cytochrome c biogenesi 95.6 0.28 6.1E-06 50.5 13.8 103 510-615 153-261 (287)
217 KOG2796 Uncharacterized conser 95.5 0.79 1.7E-05 45.9 16.0 137 381-519 181-325 (366)
218 PRK10803 tol-pal system protei 95.5 0.16 3.4E-06 52.8 12.0 98 515-615 145-251 (263)
219 KOG0543 FKBP-type peptidyl-pro 95.3 0.15 3.2E-06 54.5 10.8 64 581-644 257-320 (397)
220 COG0457 NrfG FOG: TPR repeat [ 95.1 4 8.7E-05 40.5 28.5 194 447-644 59-265 (291)
221 PF13525 YfiO: Outer membrane 95.0 1.4 3E-05 44.0 16.9 162 454-636 12-199 (203)
222 KOG1585 Protein required for f 95.0 3 6.4E-05 41.6 17.8 143 480-639 93-251 (308)
223 KOG1130 Predicted G-alpha GTPa 94.9 2.3 5.1E-05 45.3 18.1 131 480-610 197-344 (639)
224 PF13428 TPR_14: Tetratricopep 94.9 0.048 1E-06 39.1 4.3 42 582-623 2-43 (44)
225 KOG2796 Uncharacterized conser 94.8 1.9 4E-05 43.4 16.2 133 480-613 179-318 (366)
226 KOG1941 Acetylcholine receptor 94.6 0.53 1.1E-05 49.2 12.3 163 479-641 84-272 (518)
227 KOG2041 WD40 repeat protein [G 94.6 11 0.00024 43.2 30.3 30 234-263 689-718 (1189)
228 PF13371 TPR_9: Tetratricopept 94.5 0.14 3E-06 41.3 6.8 61 558-618 4-66 (73)
229 PF12921 ATP13: Mitochondrial 94.5 0.41 8.9E-06 43.4 10.3 51 508-558 47-97 (126)
230 PF13424 TPR_12: Tetratricopep 94.5 0.062 1.4E-06 44.1 4.7 27 583-609 48-74 (78)
231 PF03704 BTAD: Bacterial trans 94.5 0.18 4E-06 47.3 8.5 69 205-274 65-138 (146)
232 KOG1920 IkappaB kinase complex 94.2 19 0.00041 44.2 27.8 127 489-640 919-1051(1265)
233 KOG3941 Intermediate in Toll s 94.1 0.25 5.3E-06 49.8 8.6 126 190-334 53-186 (406)
234 COG3898 Uncharacterized membra 94.1 9.7 0.00021 40.7 28.6 245 386-644 129-392 (531)
235 COG5107 RNA14 Pre-mRNA 3'-end 94.1 11 0.00024 41.1 33.5 77 168-246 39-118 (660)
236 PRK11906 transcriptional regul 93.8 1.1 2.3E-05 49.4 13.5 64 580-643 337-400 (458)
237 KOG0543 FKBP-type peptidyl-pro 93.7 0.73 1.6E-05 49.4 11.8 95 550-644 258-355 (397)
238 COG3898 Uncharacterized membra 93.7 12 0.00025 40.2 28.8 244 318-575 131-389 (531)
239 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 0.42 9E-06 52.4 9.9 62 549-610 75-141 (453)
240 PF13281 DUF4071: Domain of un 93.4 5.3 0.00012 43.3 17.9 164 480-644 143-334 (374)
241 PF12921 ATP13: Mitochondrial 93.2 1.1 2.3E-05 40.7 10.6 79 513-591 2-98 (126)
242 COG3118 Thioredoxin domain-con 93.1 3.3 7.2E-05 42.7 14.7 120 522-645 143-266 (304)
243 COG0457 NrfG FOG: TPR repeat [ 93.0 10 0.00022 37.5 27.0 161 448-613 96-268 (291)
244 PF13512 TPR_18: Tetratricopep 92.9 2.2 4.8E-05 39.2 12.0 89 556-644 17-128 (142)
245 PF10300 DUF3808: Protein of u 92.8 19 0.00042 41.0 22.5 118 320-439 246-374 (468)
246 KOG3941 Intermediate in Toll s 92.8 0.77 1.7E-05 46.4 9.6 100 466-566 53-175 (406)
247 COG4105 ComL DNA uptake lipopr 92.7 13 0.00027 37.9 18.8 60 345-406 41-100 (254)
248 PF02259 FAT: FAT domain; Int 92.7 17 0.00037 39.6 21.8 149 477-628 145-305 (352)
249 KOG4555 TPR repeat-containing 92.7 0.63 1.4E-05 41.4 7.8 88 558-645 52-145 (175)
250 KOG1941 Acetylcholine receptor 92.5 14 0.00031 39.1 18.4 123 452-574 127-271 (518)
251 PF10345 Cohesin_load: Cohesin 92.4 29 0.00062 41.3 41.6 67 51-126 18-89 (608)
252 PF07035 Mic1: Colon cancer-as 92.4 10 0.00022 36.1 16.8 134 222-366 14-148 (167)
253 PF10300 DUF3808: Protein of u 92.3 4.7 0.0001 46.0 16.7 115 527-644 247-376 (468)
254 KOG1920 IkappaB kinase complex 92.1 38 0.00082 41.8 26.3 138 314-475 915-1054(1265)
255 COG1729 Uncharacterized protei 92.0 1.7 3.6E-05 44.4 11.1 101 515-616 144-250 (262)
256 PF04053 Coatomer_WDAD: Coatom 91.8 6.5 0.00014 44.2 16.6 132 211-407 270-403 (443)
257 PRK11906 transcriptional regul 91.8 8 0.00017 42.8 16.7 77 494-574 320-397 (458)
258 KOG0890 Protein kinase of the 91.5 62 0.0013 43.2 32.2 62 549-610 1670-1731(2382)
259 smart00299 CLH Clathrin heavy 91.3 10 0.00022 35.1 15.2 82 342-435 11-92 (140)
260 COG3118 Thioredoxin domain-con 91.2 12 0.00027 38.7 16.2 154 486-641 142-299 (304)
261 PF13170 DUF4003: Protein of u 91.0 5.7 0.00012 42.0 14.5 134 144-279 70-224 (297)
262 smart00299 CLH Clathrin heavy 91.0 9.8 0.00021 35.2 14.8 85 203-295 8-92 (140)
263 KOG4234 TPR repeat-containing 90.5 1 2.3E-05 43.2 7.3 88 558-645 104-198 (271)
264 PF08631 SPO22: Meiosis protei 90.4 26 0.00057 36.8 24.8 100 307-412 84-192 (278)
265 PF08631 SPO22: Meiosis protei 90.2 27 0.00058 36.8 24.8 18 591-608 256-273 (278)
266 PF04184 ST7: ST7 protein; In 90.2 17 0.00038 40.4 17.2 101 515-615 261-380 (539)
267 PRK11619 lytic murein transgly 90.2 47 0.001 39.5 33.4 59 307-366 99-157 (644)
268 KOG2610 Uncharacterized conser 90.0 7.1 0.00015 40.8 13.3 112 460-575 116-235 (491)
269 KOG2610 Uncharacterized conser 89.9 3 6.5E-05 43.4 10.6 158 490-650 115-282 (491)
270 COG1729 Uncharacterized protei 89.7 2.9 6.3E-05 42.7 10.4 93 480-575 144-241 (262)
271 PF09205 DUF1955: Domain of un 89.7 15 0.00033 33.1 14.0 56 484-540 92-147 (161)
272 COG4105 ComL DNA uptake lipopr 89.7 26 0.00056 35.7 19.3 166 457-642 44-231 (254)
273 PF04053 Coatomer_WDAD: Coatom 89.6 6.6 0.00014 44.1 14.3 132 415-576 298-429 (443)
274 PRK15331 chaperone protein Sic 89.5 6.8 0.00015 37.0 11.8 85 488-575 47-131 (165)
275 KOG2114 Vacuolar assembly/sort 89.5 53 0.0011 39.0 25.5 53 555-608 711-763 (933)
276 KOG4555 TPR repeat-containing 89.2 2.4 5.3E-05 37.8 8.1 87 523-612 53-146 (175)
277 PF13512 TPR_18: Tetratricopep 89.0 10 0.00022 35.0 12.3 115 485-615 17-133 (142)
278 COG4785 NlpI Lipoprotein NlpI, 88.8 20 0.00044 35.3 14.6 160 478-645 99-267 (297)
279 PF13176 TPR_7: Tetratricopept 88.7 0.84 1.8E-05 30.9 4.1 26 617-642 1-26 (36)
280 PRK09687 putative lyase; Provi 88.6 35 0.00076 35.9 28.1 203 375-590 66-276 (280)
281 PF07035 Mic1: Colon cancer-as 88.4 16 0.00034 34.9 13.6 132 118-265 15-148 (167)
282 PRK11619 lytic murein transgly 88.2 64 0.0014 38.4 37.7 51 314-364 319-372 (644)
283 KOG4648 Uncharacterized conser 88.0 1 2.2E-05 46.8 5.8 93 520-615 104-199 (536)
284 PF00515 TPR_1: Tetratricopept 88.0 1 2.2E-05 29.9 4.1 31 583-613 3-33 (34)
285 PF07719 TPR_2: Tetratricopept 87.7 1.4 3.1E-05 29.0 4.7 30 584-613 4-33 (34)
286 PF09613 HrpB1_HrpK: Bacterial 86.6 19 0.0004 34.0 12.8 87 523-612 20-108 (160)
287 COG4649 Uncharacterized protei 86.5 19 0.00041 34.2 12.5 124 348-474 68-194 (221)
288 PF13428 TPR_14: Tetratricopep 86.3 0.98 2.1E-05 32.2 3.4 27 100-126 4-30 (44)
289 KOG2066 Vacuolar assembly/sort 86.1 80 0.0017 37.3 28.2 38 561-601 673-710 (846)
290 KOG1586 Protein required for f 85.7 41 0.00089 33.7 16.7 157 316-513 23-189 (288)
291 PF04184 ST7: ST7 protein; In 85.0 34 0.00074 38.2 15.7 145 208-366 174-323 (539)
292 COG3629 DnrI DNA-binding trans 84.1 8.1 0.00018 40.1 10.1 74 340-418 155-233 (280)
293 PF02259 FAT: FAT domain; Int 83.7 50 0.0011 35.9 17.3 66 580-645 145-214 (352)
294 COG4649 Uncharacterized protei 83.2 37 0.0008 32.3 12.8 59 212-270 68-127 (221)
295 KOG4570 Uncharacterized conser 83.1 7.9 0.00017 40.1 9.3 102 165-267 58-165 (418)
296 PF13170 DUF4003: Protein of u 83.0 22 0.00048 37.7 13.2 130 113-244 78-224 (297)
297 KOG1585 Protein required for f 82.8 57 0.0012 33.0 16.5 25 379-403 93-117 (308)
298 PF13176 TPR_7: Tetratricopept 82.7 2.2 4.7E-05 28.9 3.7 28 583-610 1-28 (36)
299 KOG1586 Protein required for f 82.4 56 0.0012 32.8 14.3 23 591-613 164-186 (288)
300 COG3629 DnrI DNA-binding trans 81.9 5.9 0.00013 41.2 8.1 63 582-644 154-216 (280)
301 PF09613 HrpB1_HrpK: Bacterial 81.9 8.4 0.00018 36.2 8.3 55 591-645 20-74 (160)
302 TIGR02561 HrpB1_HrpK type III 81.8 7.9 0.00017 35.8 7.9 55 592-646 21-75 (153)
303 KOG0276 Vesicle coat complex C 81.3 18 0.00039 41.0 11.8 149 458-639 597-745 (794)
304 PF07719 TPR_2: Tetratricopept 81.2 2.8 6E-05 27.5 3.8 29 616-644 2-30 (34)
305 KOG1550 Extracellular protein 81.1 1.2E+02 0.0026 35.5 23.2 79 564-645 454-539 (552)
306 PF00515 TPR_1: Tetratricopept 80.7 3 6.4E-05 27.5 3.8 29 616-644 2-30 (34)
307 KOG2063 Vacuolar assembly/sort 79.7 1.6E+02 0.0034 36.1 22.7 28 378-405 505-532 (877)
308 PRK15180 Vi polysaccharide bio 78.8 31 0.00067 37.9 12.3 50 524-575 334-383 (831)
309 COG4785 NlpI Lipoprotein NlpI, 78.7 20 0.00043 35.4 9.8 109 594-714 78-186 (297)
310 PF10602 RPN7: 26S proteasome 78.6 40 0.00088 32.6 12.4 57 449-505 38-100 (177)
311 PF10602 RPN7: 26S proteasome 78.3 27 0.00058 33.9 11.1 95 479-575 37-139 (177)
312 PF13181 TPR_8: Tetratricopept 78.2 3.9 8.5E-05 26.8 3.8 29 584-612 4-32 (34)
313 KOG2300 Uncharacterized conser 78.0 1.2E+02 0.0026 33.8 31.0 89 388-476 334-433 (629)
314 PF00637 Clathrin: Region in C 77.9 0.66 1.4E-05 43.3 -0.2 54 208-261 13-66 (143)
315 PF04097 Nic96: Nup93/Nic96; 77.1 1.7E+02 0.0036 34.9 21.5 224 95-335 110-355 (613)
316 PRK09687 putative lyase; Provi 76.9 1E+02 0.0022 32.4 27.8 91 306-404 141-232 (280)
317 KOG1258 mRNA processing protei 76.5 1.5E+02 0.0032 34.1 33.9 182 337-525 296-487 (577)
318 PF13431 TPR_17: Tetratricopep 76.3 2.6 5.5E-05 28.2 2.4 25 545-569 8-33 (34)
319 PF13374 TPR_10: Tetratricopep 76.2 4.4 9.6E-05 27.9 3.8 28 616-643 3-30 (42)
320 KOG2066 Vacuolar assembly/sort 76.1 1.7E+02 0.0038 34.7 26.8 169 70-265 363-533 (846)
321 PF13181 TPR_8: Tetratricopept 75.9 5.5 0.00012 26.1 4.0 28 616-643 2-29 (34)
322 KOG4648 Uncharacterized conser 75.1 9.2 0.0002 40.0 7.0 92 485-581 104-198 (536)
323 KOG4570 Uncharacterized conser 75.0 24 0.00051 36.8 9.8 97 442-542 59-164 (418)
324 PRK13800 putative oxidoreducta 74.0 2.4E+02 0.0053 35.3 27.1 257 326-609 623-880 (897)
325 PF14853 Fis1_TPR_C: Fis1 C-te 74.0 19 0.00041 27.0 6.6 50 617-692 3-52 (53)
326 COG2976 Uncharacterized protei 73.6 94 0.002 30.4 14.8 113 496-612 70-190 (207)
327 PF02284 COX5A: Cytochrome c o 73.4 24 0.00052 30.3 7.8 60 496-557 28-87 (108)
328 PF07721 TPR_4: Tetratricopept 72.8 5 0.00011 24.8 2.9 24 616-639 2-25 (26)
329 KOG1498 26S proteasome regulat 72.0 1.5E+02 0.0033 32.1 17.0 208 425-665 25-262 (439)
330 PF13174 TPR_6: Tetratricopept 71.8 5.5 0.00012 25.8 3.2 28 617-644 2-29 (33)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 71.6 30 0.00066 29.4 7.9 62 494-557 23-84 (103)
332 TIGR02561 HrpB1_HrpK type III 71.3 57 0.0012 30.3 10.4 65 525-592 22-88 (153)
333 COG5159 RPN6 26S proteasome re 71.3 99 0.0021 31.9 12.9 94 517-610 129-235 (421)
334 KOG3364 Membrane protein invol 70.1 48 0.001 30.2 9.3 48 596-643 50-99 (149)
335 KOG1464 COP9 signalosome, subu 69.3 1.4E+02 0.003 30.6 19.6 261 352-619 41-341 (440)
336 PHA02875 ankyrin repeat protei 69.3 1.9E+02 0.004 32.4 16.9 199 49-272 16-230 (413)
337 TIGR02508 type_III_yscG type I 69.3 68 0.0015 27.5 9.5 62 454-518 46-107 (115)
338 cd00923 Cyt_c_Oxidase_Va Cytoc 68.6 12 0.00025 31.8 4.9 58 48-105 27-84 (103)
339 TIGR02508 type_III_yscG type I 68.2 43 0.00092 28.7 8.1 59 179-240 47-105 (115)
340 PF11207 DUF2989: Protein of u 68.1 27 0.00058 34.3 8.1 74 561-635 119-198 (203)
341 PF13174 TPR_6: Tetratricopept 67.8 9.9 0.00022 24.5 3.8 30 585-614 4-33 (33)
342 KOG1550 Extracellular protein 66.9 2.1E+02 0.0045 33.6 16.8 150 490-647 261-429 (552)
343 KOG4642 Chaperone-dependent E3 66.6 13 0.00029 37.1 5.8 82 562-643 23-106 (284)
344 PF00637 Clathrin: Region in C 66.0 6.1 0.00013 36.7 3.4 84 138-228 13-96 (143)
345 PHA02875 ankyrin repeat protei 65.7 1.8E+02 0.004 32.4 15.9 206 107-337 9-229 (413)
346 PF13934 ELYS: Nuclear pore co 65.2 98 0.0021 31.4 12.1 107 480-595 78-186 (226)
347 KOG1464 COP9 signalosome, subu 65.1 1.7E+02 0.0037 30.0 17.4 197 442-638 21-254 (440)
348 COG3947 Response regulator con 64.3 22 0.00048 36.7 6.9 61 583-643 281-341 (361)
349 KOG0545 Aryl-hydrocarbon recep 63.9 59 0.0013 32.8 9.5 89 556-644 185-293 (329)
350 PF02284 COX5A: Cytochrome c o 63.5 9.4 0.0002 32.7 3.5 58 48-105 30-87 (108)
351 PF06552 TOM20_plant: Plant sp 63.2 60 0.0013 31.3 9.2 46 597-642 51-100 (186)
352 KOG1308 Hsp70-interacting prot 62.7 4.4 9.5E-05 42.6 1.8 90 561-650 126-217 (377)
353 PF13374 TPR_10: Tetratricopep 62.5 17 0.00038 24.8 4.5 26 480-505 4-29 (42)
354 KOG0403 Neoplastic transformat 62.1 2.6E+02 0.0055 31.0 19.4 25 205-229 348-372 (645)
355 KOG4234 TPR repeat-containing 61.2 1.4E+02 0.003 29.4 11.2 28 590-617 177-204 (271)
356 COG4455 ImpE Protein of avirul 60.9 28 0.00061 34.4 6.7 65 551-615 3-69 (273)
357 PF13762 MNE1: Mitochondrial s 60.8 94 0.002 28.9 9.8 55 235-289 77-132 (145)
358 PF06552 TOM20_plant: Plant sp 58.5 34 0.00075 32.8 6.8 84 529-647 51-139 (186)
359 smart00028 TPR Tetratricopepti 58.5 20 0.00043 22.0 4.0 25 587-611 7-31 (34)
360 COG1747 Uncharacterized N-term 58.0 3.2E+02 0.007 30.9 22.9 48 528-575 184-231 (711)
361 PRK10941 hypothetical protein; 57.1 43 0.00093 34.9 7.9 62 583-644 183-244 (269)
362 KOG2063 Vacuolar assembly/sort 57.0 2.9E+02 0.0063 34.0 15.6 38 282-319 601-638 (877)
363 PF07721 TPR_4: Tetratricopept 56.9 20 0.00043 22.0 3.4 21 553-573 5-25 (26)
364 PF14853 Fis1_TPR_C: Fis1 C-te 56.9 20 0.00043 26.9 3.9 32 586-617 6-37 (53)
365 PF09986 DUF2225: Uncharacteri 55.8 64 0.0014 32.4 8.7 59 587-645 124-195 (214)
366 COG2909 MalT ATP-dependent tra 55.4 4.6E+02 0.01 31.9 27.0 89 318-406 426-526 (894)
367 PF13762 MNE1: Mitochondrial s 55.2 1.1E+02 0.0024 28.4 9.3 95 51-145 25-128 (145)
368 PF11207 DUF2989: Protein of u 54.3 76 0.0017 31.2 8.5 73 495-568 123-197 (203)
369 KOG0551 Hsp90 co-chaperone CNS 54.1 63 0.0014 34.2 8.3 92 550-641 82-179 (390)
370 KOG2297 Predicted translation 54.1 2.9E+02 0.0062 29.1 16.6 125 95-251 109-237 (412)
371 PF14561 TPR_20: Tetratricopep 53.9 32 0.0007 29.0 5.3 44 602-645 9-52 (90)
372 KOG0276 Vesicle coat complex C 53.3 1.6E+02 0.0034 34.0 11.6 28 377-404 666-693 (794)
373 TIGR03504 FimV_Cterm FimV C-te 53.3 23 0.00049 25.3 3.6 27 619-645 3-29 (44)
374 smart00028 TPR Tetratricopepti 51.6 23 0.0005 21.6 3.4 28 616-643 2-29 (34)
375 PF09670 Cas_Cas02710: CRISPR- 51.5 2.2E+02 0.0048 31.5 12.9 52 488-540 141-196 (379)
376 COG4455 ImpE Protein of avirul 51.1 2.7E+02 0.0058 27.9 12.0 57 483-540 6-62 (273)
377 PF09477 Type_III_YscG: Bacter 48.9 1.8E+02 0.004 25.4 9.2 61 454-517 47-107 (116)
378 PF04097 Nic96: Nup93/Nic96; 48.3 5.4E+02 0.012 30.6 29.6 88 313-406 264-356 (613)
379 PF07163 Pex26: Pex26 protein; 48.2 1.6E+02 0.0035 30.6 9.9 85 384-470 90-181 (309)
380 KOG0376 Serine-threonine phosp 47.8 13 0.00029 41.0 2.5 93 520-615 11-106 (476)
381 PF09477 Type_III_YscG: Bacter 46.7 1.7E+02 0.0038 25.5 8.4 74 156-232 26-99 (116)
382 PHA03100 ankyrin repeat protei 46.6 4.2E+02 0.0091 30.2 15.0 40 157-196 157-198 (480)
383 PF10579 Rapsyn_N: Rapsyn N-te 46.4 50 0.0011 27.0 4.9 45 593-637 18-65 (80)
384 PRK12798 chemotaxis protein; R 46.1 4.5E+02 0.0098 29.1 22.8 179 460-641 125-321 (421)
385 PF10579 Rapsyn_N: Rapsyn N-te 45.9 48 0.001 27.1 4.7 47 525-571 18-65 (80)
386 KOG0890 Protein kinase of the 45.4 1E+03 0.022 32.8 33.6 310 312-646 1388-1733(2382)
387 KOG0687 26S proteasome regulat 44.8 4.1E+02 0.009 28.3 14.8 71 340-410 106-177 (393)
388 PF10345 Cohesin_load: Cohesin 44.5 6.1E+02 0.013 30.1 32.3 49 525-573 373-428 (608)
389 COG1747 Uncharacterized N-term 44.1 5.3E+02 0.012 29.3 21.2 177 303-488 62-249 (711)
390 PF11663 Toxin_YhaV: Toxin wit 43.8 25 0.00055 31.8 3.2 32 109-142 107-138 (140)
391 PF04190 DUF410: Protein of un 43.5 4E+02 0.0086 27.7 19.3 83 305-406 88-170 (260)
392 PF10366 Vps39_1: Vacuolar sor 43.4 1.5E+02 0.0032 26.1 8.0 26 100-125 42-67 (108)
393 TIGR03504 FimV_Cterm FimV C-te 43.4 53 0.0012 23.5 4.2 24 484-507 5-28 (44)
394 PF04910 Tcf25: Transcriptiona 43.2 4.8E+02 0.01 28.6 15.3 128 510-643 7-167 (360)
395 KOG2297 Predicted translation 41.4 4.5E+02 0.0098 27.7 18.5 22 477-498 320-341 (412)
396 KOG4507 Uncharacterized conser 40.9 71 0.0015 36.3 6.7 100 524-626 618-721 (886)
397 PF04190 DUF410: Protein of un 40.5 4.4E+02 0.0095 27.3 20.5 83 445-542 88-170 (260)
398 KOG4077 Cytochrome c oxidase, 39.8 72 0.0016 28.6 5.2 44 52-95 73-116 (149)
399 COG2909 MalT ATP-dependent tra 39.6 7.9E+02 0.017 30.0 29.3 179 458-640 469-684 (894)
400 COG3947 Response regulator con 39.3 4.8E+02 0.01 27.4 16.2 42 354-401 149-190 (361)
401 smart00386 HAT HAT (Half-A-TPR 39.2 48 0.001 20.8 3.4 29 595-623 1-29 (33)
402 COG5187 RPN7 26S proteasome re 38.6 4.8E+02 0.01 27.3 12.8 71 339-409 116-187 (412)
403 PF11768 DUF3312: Protein of u 38.3 3.7E+02 0.0081 30.8 11.8 55 451-505 412-471 (545)
404 KOG0292 Vesicle coat complex C 37.9 47 0.001 39.6 5.0 117 491-639 606-722 (1202)
405 PF14689 SPOB_a: Sensor_kinase 37.1 72 0.0016 24.7 4.5 47 218-266 6-52 (62)
406 KOG4077 Cytochrome c oxidase, 36.8 1.7E+02 0.0036 26.4 7.0 59 496-556 67-125 (149)
407 PRK10564 maltose regulon perip 36.1 73 0.0016 33.4 5.6 43 233-275 252-295 (303)
408 PF14689 SPOB_a: Sensor_kinase 36.0 1.1E+02 0.0023 23.8 5.3 29 512-540 22-50 (62)
409 PRK13800 putative oxidoreducta 35.9 9.8E+02 0.021 30.0 29.6 91 446-540 788-879 (897)
410 KOG2396 HAT (Half-A-TPR) repea 35.6 7.1E+02 0.015 28.3 37.2 88 553-640 464-555 (568)
411 PF07163 Pex26: Pex26 protein; 35.4 3.5E+02 0.0077 28.2 10.1 85 485-572 90-181 (309)
412 PF14863 Alkyl_sulf_dimr: Alky 34.8 1.6E+02 0.0035 27.3 7.1 65 565-632 57-121 (141)
413 COG4976 Predicted methyltransf 34.5 64 0.0014 32.3 4.6 53 592-644 6-58 (287)
414 PF12862 Apc5: Anaphase-promot 34.2 1.2E+02 0.0027 25.6 6.0 53 591-643 8-69 (94)
415 PF15122 TMEM206: TMEM206 prot 33.9 21 0.00047 35.3 1.3 17 854-871 247-263 (298)
416 KOG4642 Chaperone-dependent E3 33.7 3.6E+02 0.0079 27.4 9.6 79 459-539 22-104 (284)
417 KOG3807 Predicted membrane pro 33.0 1.4E+02 0.0031 31.4 7.0 47 490-538 287-336 (556)
418 PHA02977 hypothetical protein; 33.0 15 0.00033 32.9 0.2 52 788-865 118-169 (201)
419 PF14669 Asp_Glu_race_2: Putat 32.6 4.9E+02 0.011 25.5 15.0 112 327-473 96-207 (233)
420 KOG4279 Serine/threonine prote 31.5 3.6E+02 0.0078 32.0 10.3 180 431-614 182-399 (1226)
421 PF11663 Toxin_YhaV: Toxin wit 31.3 54 0.0012 29.8 3.3 31 214-246 107-137 (140)
422 cd00280 TRFH Telomeric Repeat 31.2 1.5E+02 0.0033 28.7 6.3 66 79-147 85-158 (200)
423 PF04090 RNA_pol_I_TF: RNA pol 31.1 5.3E+02 0.011 25.5 10.7 42 584-625 142-188 (199)
424 PF13934 ELYS: Nuclear pore co 30.9 4.5E+02 0.0098 26.6 10.4 108 507-626 73-183 (226)
425 cd08819 CARD_MDA5_2 Caspase ac 30.8 2.6E+02 0.0056 23.5 6.8 38 183-221 48-85 (88)
426 PF10366 Vps39_1: Vacuolar sor 30.6 3.7E+02 0.0081 23.5 8.7 26 380-405 42-67 (108)
427 smart00544 MA3 Domain in DAP-5 30.5 3.7E+02 0.0079 23.4 9.5 60 67-127 6-67 (113)
428 PF08311 Mad3_BUB1_I: Mad3/BUB 29.5 3.9E+02 0.0084 24.1 8.7 44 219-262 80-124 (126)
429 COG2976 Uncharacterized protei 28.8 5.8E+02 0.012 25.2 15.0 54 455-508 134-189 (207)
430 cd00280 TRFH Telomeric Repeat 28.6 2.7E+02 0.0058 27.1 7.4 29 556-584 118-146 (200)
431 PF12862 Apc5: Anaphase-promot 28.2 2.7E+02 0.0059 23.5 7.1 22 589-610 49-70 (94)
432 PF09670 Cas_Cas02710: CRISPR- 27.4 6.4E+02 0.014 27.9 11.6 53 522-576 140-196 (379)
433 COG0790 FOG: TPR repeat, SEL1 27.3 7.3E+02 0.016 25.9 20.7 77 567-646 173-268 (292)
434 PF11848 DUF3368: Domain of un 27.0 2E+02 0.0044 20.9 5.1 30 249-278 14-43 (48)
435 PF11846 DUF3366: Domain of un 27.0 1.8E+02 0.004 28.4 6.8 37 576-612 139-175 (193)
436 KOG4279 Serine/threonine prote 26.9 2.4E+02 0.0052 33.4 8.0 102 478-582 201-321 (1226)
437 PF12926 MOZART2: Mitotic-spin 26.6 3.3E+02 0.0072 22.7 6.7 43 156-198 28-70 (88)
438 KOG0687 26S proteasome regulat 26.3 8.2E+02 0.018 26.2 13.1 94 515-610 106-210 (393)
439 PF11848 DUF3368: Domain of un 26.1 2.2E+02 0.0049 20.6 5.3 33 489-521 13-45 (48)
440 cd08819 CARD_MDA5_2 Caspase ac 26.1 3.7E+02 0.0081 22.6 7.0 37 459-496 48-84 (88)
441 KOG4507 Uncharacterized conser 25.8 2.8E+02 0.006 31.9 8.1 134 510-645 568-706 (886)
442 KOG2471 TPR repeat-containing 25.8 1E+03 0.022 27.0 16.8 104 455-561 248-381 (696)
443 COG5108 RPO41 Mitochondrial DN 25.0 5.1E+02 0.011 30.4 10.0 74 312-388 33-114 (1117)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 25.0 5.1E+02 0.011 23.3 8.9 45 355-402 80-124 (126)
445 PF11768 DUF3312: Protein of u 24.7 9.1E+02 0.02 27.9 12.0 58 174-231 411-473 (545)
446 COG5159 RPN6 26S proteasome re 24.6 8.3E+02 0.018 25.6 20.8 52 209-260 10-68 (421)
447 PRK13342 recombination factor 23.6 1.1E+03 0.023 26.5 15.8 167 392-574 152-330 (413)
448 KOG0686 COP9 signalosome, subu 23.6 1E+03 0.022 26.3 14.8 59 308-366 151-215 (466)
449 PF07720 TPR_3: Tetratricopept 23.5 2.4E+02 0.0052 19.1 4.6 16 622-637 8-23 (36)
450 PRK10564 maltose regulon perip 23.0 1.5E+02 0.0031 31.3 5.1 40 480-519 259-298 (303)
451 KOG4521 Nuclear pore complex, 22.4 1.7E+03 0.037 28.4 15.2 122 516-637 986-1124(1480)
452 KOG1308 Hsp70-interacting prot 22.0 33 0.00071 36.3 0.3 102 592-706 125-226 (377)
453 PF10255 Paf67: RNA polymerase 21.9 5.2E+02 0.011 28.7 9.4 60 583-642 124-191 (404)
454 PF12968 DUF3856: Domain of Un 21.2 6.1E+02 0.013 22.8 9.0 62 580-641 54-126 (144)
455 KOG0292 Vesicle coat complex C 20.9 9E+02 0.019 29.6 11.2 130 456-609 652-781 (1202)
456 PF11817 Foie-gras_1: Foie gra 20.8 3E+02 0.0066 28.2 7.2 20 521-540 186-205 (247)
457 KOG0686 COP9 signalosome, subu 20.7 1.2E+03 0.025 25.9 13.1 59 172-230 151-215 (466)
458 PF12069 DUF3549: Protein of u 20.3 1.1E+03 0.024 25.5 12.9 85 453-540 172-257 (340)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-92 Score=862.91 Aligned_cols=687 Identities=32% Similarity=0.556 Sum_probs=626.1
Q ss_pred hHHHHHHHHHhhChhh---HHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHH
Q 002790 31 LDCFDHLLQQCKTIHQ---LKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVN 107 (881)
Q Consensus 31 ~~~~~~ll~~c~~~~~---~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~ 107 (881)
..+|..+++.|...+. ..++|..+.+.|..++..++|.||..|+++|+++.|.++|++|+. ||+.+||.+|.+|
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~ 162 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGY 162 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHH
Confidence 3456677777765443 478888888889889999999999999999999999999999998 9999999999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 002790 108 VSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQM 187 (881)
Q Consensus 108 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 187 (881)
++.|++++|+++|++|...|+.||..||+.++++|+..+++..+ .+++..+.+.|+.||..++|.|+.+|+++|++
T Consensus 163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG----REVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH----HHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 188 SDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 188 ~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHH
Q 002790 268 IEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNA 343 (881)
Q Consensus 268 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 343 (881)
+.||..+|+.++.+|++.|+++.|.++++.|. .||..+|+++|.+|++.|++++|.++|++|.+ ||..+|+.
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 99999999999998888888888888887774 35677777777777777777777777777742 55555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHccC---------------------------CCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 344 LITSYAEAGLCDEAVEVFSQLEKLDG---------------------------GSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 344 li~~~~~~g~~~~A~~l~~~m~~~~~---------------------------~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
++.+|++.|++++|.++++.|.+.|. ..+..+|.++|+++|.+|++.|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 55555555555555555555544442 012356778888888888888888888
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK 476 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~ 476 (881)
+.+|++|.. ++.||..||+.+|.+|++.|.++.+.+++..+.+.|+.++..++|+||++|+++|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 888888875 5899999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMV 556 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li 556 (881)
|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHH
Q 002790 557 DLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAK 636 (881)
Q Consensus 557 ~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 636 (881)
++|++.|++++|.+++++|+.+||..+|++|+.+|+.+++.+.++...+++.+++|.++..|..|+++|.+.|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCcceeEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhccccchhHHHh
Q 002790 637 VRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVKRIQRI 716 (881)
Q Consensus 637 ~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~~~~~~~~~~~ 716 (881)
+++.|+++|+++.||+||+++.+++|.|.+||..||+.+++++.++++..+|++.||.||+..++++ +++
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~--------- 782 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEV--------- 782 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHH---------
Confidence 9999999999999999999999999999999999999999999999999999999999999887633 332
Q ss_pred hhhhhhhhhhhcCccchHHHHHHHhhhccc
Q 002790 717 RADNIKSKHRIVGFRNLKLGLRLLLSLRST 746 (881)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (881)
++...+.+|+|++|.++.+..-..
T Consensus 783 ------~k~~~~~~hse~la~a~~l~~~~~ 806 (857)
T PLN03077 783 ------SKDDIFCGHSERLAIAFGLINTVP 806 (857)
T ss_pred ------HHHHHHHhccHHHHHHHhhhcCCC
Confidence 677889999999999999876443
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-78 Score=722.18 Aligned_cols=557 Identities=32% Similarity=0.545 Sum_probs=509.7
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhH
Q 002790 95 SSSLLWNSILRVNVSNGLYENALKLYVKMRKLG-VLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHI 173 (881)
Q Consensus 95 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~ 173 (881)
++..+|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++.+.+ .+++..|.+.|+.||..+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a----~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCV----KAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH----HHHHHHHHHhCCCcchHH
Confidence 567799999999999999999999999998864 789999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCCh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRL 253 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 253 (881)
||.|+.+|++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|..
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999888888888888888888777777666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEI 333 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m 333 (881)
+.+.+++..|.+. |+.+|..+|++||++|+++|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~-----------------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 241 RAGQQLHCCVLKT-----------------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHh-----------------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6666665555555 46667888899999999999999999999998
Q ss_pred cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh
Q 002790 334 EEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV 413 (881)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 413 (881)
.++|+++||++|.+ |++.|++++|+++|++|.+.|+.||..
T Consensus 286 ~~~~~vt~n~li~~---------------------------------------y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 286 PEKTTVAWNSMLAG---------------------------------------YALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred CCCChhHHHHHHHH---------------------------------------HHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 76655555555555 455555666666666676777788888
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Q 002790 414 TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGL 493 (881)
Q Consensus 414 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~ 493 (881)
||+.++.+|++.|+++.|.+++..|.+.|+.||..++++||++|+++|++++|.++|++|.++|+.+||+||.+|+++|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 88888888888888888888888888888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 494 GENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 494 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|+++|++++|.++++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCcce
Q 002790 574 NMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQS 653 (881)
Q Consensus 574 ~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s 653 (881)
+|+.+|+..+|++|+.+|+.+|+++.|..+++++.+..|++..+|..|+++|++.|+|++|.+++++|+++|+++.||+|
T Consensus 487 ~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s 566 (697)
T PLN03081 487 RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566 (697)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhccccchhHHHhhhhhhhhhhhhcCccch
Q 002790 654 WIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVKRIQRIRADNIKSKHRIVGFRNL 733 (881)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (881)
|+++.+.+|.|.+|+..||+.+++++.++++..+|++.||+||+..++++++++ ++...+.+|+|
T Consensus 567 ~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~---------------~~~~~~~~hse 631 (697)
T PLN03081 567 WIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED---------------EEKVSGRYHSE 631 (697)
T ss_pred EEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH---------------HHHHHHHhccH
Confidence 999999999999999999999999999999999999999999999999888775 67788999999
Q ss_pred HHHHHHHhhhc
Q 002790 734 KLGLRLLLSLR 744 (881)
Q Consensus 734 ~~~~~~~~~~~ 744 (881)
++|.++.+.--
T Consensus 632 kla~a~~l~~~ 642 (697)
T PLN03081 632 KLAIAFGLINT 642 (697)
T ss_pred HHHHHhhCccC
Confidence 99999987753
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-71 Score=679.88 Aligned_cols=674 Identities=18% Similarity=0.234 Sum_probs=594.5
Q ss_pred hHHHHHHHHHh---hChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHHHHHHHH
Q 002790 31 LDCFDHLLQQC---KTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLWNSILRV 106 (881)
Q Consensus 31 ~~~~~~ll~~c---~~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~n~li~~ 106 (881)
.+.+..++..+ +...++..++..|...|+.|+..+|..++..|.+.+.++.+.++++.+.. +..+++..+|++|..
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 33444444444 55556688899999999999999999999999999999999999988765 556899999999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 002790 107 NVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQ 186 (881)
Q Consensus 107 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 186 (881)
|++.|+++.|+++|++|. .||..+|+.+|.+|++.|++++| ..++++|...|+.||..+|+.++.+|++.++
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A----~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEA----LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHH----HHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 999999999999999996 47899999999999999999999 9999999999999999999999999999999
Q ss_pred hHHHHHHHhhcC----CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 002790 187 MSDSFKLFDKVR----VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDM 262 (881)
Q Consensus 187 ~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 262 (881)
++.+.+++..|. .+|..+||++|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999998886 4789999999999999999999999999998 68999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHH
Q 002790 263 MRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWN 342 (881)
Q Consensus 263 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 342 (881)
|.+.|+.||..||+.++.+|++.++.+.+.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|.+||.++||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 002790 343 ALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVC 422 (881)
Q Consensus 343 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 422 (881)
.+|.+|++.|++++|+++|++|.+.+. .||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~----~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNV----SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC----CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 999999999999999999999999884 9999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHHcCChHHHHH
Q 002790 423 AESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE---KKDLITWNSMISGYGMNGLGENALA 499 (881)
Q Consensus 423 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 499 (881)
++.|+++.|.++|+.|.+ +|..+|+++|.+|++.|+.++|..+|++|. +||..||+.++.+|++.|+.+.+.+
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 999999999999999864 688999999999999999999999999997 5799999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---C
Q 002790 500 TFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM---P 576 (881)
Q Consensus 500 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m---~ 576 (881)
++..|.+.|+.+|..++++++.+|++.|++++|.++|+.+ .||..+|++|+.+|++.|+.++|.++|++| +
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999876 589999999999999999999999999998 6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCccee
Q 002790 577 MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSW 654 (881)
Q Consensus 577 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s~ 654 (881)
.+||..||++++.+|.+.|++++|.++++.|.+. ..|+..+|..++++|.+.|++++|.+++++|. ++|++ ..|
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~-~~~ 660 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP-AVW 660 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH-HHH
Confidence 7899999999999999999999999999999843 56678899999999999999999999999883 34432 223
Q ss_pred EEEcCeE--EEEe-----ec---cCCCcch-------------HHHHHHHHHHHHHHHHcCCcCCcchhh--------Hh
Q 002790 655 IEVKRKI--HMFS-----SG---NSLQSDL-------------KNVCEVLEELALQMENKGCVPDNDIIL--------WE 703 (881)
Q Consensus 655 ~~~~~~~--~~~~-----~~---~~~~~~~-------------~~~~~~l~~l~~~m~~~g~~pd~~~~l--------~~ 703 (881)
..+.+.. |.-. +. ....|.. ..-++...++.+.|++.|.+++..... ..
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 2221100 0000 00 0000110 011334456889999999998864221 12
Q ss_pred hhccccchhHHHhhh--hhhhhhhhhcCccchH
Q 002790 704 MMGKKNVKRIQRIRA--DNIKSKHRIVGFRNLK 734 (881)
Q Consensus 704 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 734 (881)
..++...++.+.+.. +.+..+++..||.+++
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 233445555555543 6677888888888854
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-63 Score=595.64 Aligned_cols=513 Identities=17% Similarity=0.239 Sum_probs=483.4
Q ss_pred CCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHH
Q 002790 128 VLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGF-QGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWN 206 (881)
Q Consensus 128 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~-~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~ 206 (881)
..++...|..++..|++.|+++.| .+++++|.+.|+ .++..+++.++..|++.|.+++|.++|+.|..||..+||
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eA----l~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDC----IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHH----HHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 356778899999999999999999 999999999995 578888999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 002790 207 MMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLA 286 (881)
Q Consensus 207 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 286 (881)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcc------CCChhHHHHHHHHHHHcCChHHHHHH
Q 002790 287 ADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIE------EKNIVSWNALITSYAEAGLCDEAVEV 360 (881)
Q Consensus 287 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l 360 (881)
+.+.|..+++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 38999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 002790 361 FSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVR 440 (881)
Q Consensus 361 ~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 440 (881)
|++|.+.+. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+
T Consensus 602 f~~M~e~gi----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 602 YQMIHEYNI----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHcCC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999884 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002790 441 VSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE----KKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAF 516 (881)
Q Consensus 441 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 516 (881)
.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----c-------------------CCHHHHHHHHH
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGR----A-------------------GLLQEASDIVK 573 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~eA~~l~~ 573 (881)
+.++.+|++.|++++|.++|++|. +.|+.||..+|++++..|.+ + +..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999998 55999999999999976432 2 23467999999
Q ss_pred hC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC
Q 002790 574 NM---PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL-ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKV 649 (881)
Q Consensus 574 ~m---~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~ 649 (881)
+| ++.||..+|+.++.++++.+..+.+..+++.+... .+++..+|+.|++++.+. .++|..++++|.+.|+.|.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99 78899999999998888899999999999877644 777889999999998432 3689999999999999886
Q ss_pred Cc
Q 002790 650 AG 651 (881)
Q Consensus 650 ~~ 651 (881)
..
T Consensus 915 ~~ 916 (1060)
T PLN03218 915 VS 916 (1060)
T ss_pred cc
Confidence 53
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-63 Score=594.85 Aligned_cols=512 Identities=18% Similarity=0.265 Sum_probs=323.2
Q ss_pred hChhhHHHHHHHHHHhCC-CCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHH
Q 002790 42 KTIHQLKQVHNQLIVTGA-NASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLY 120 (881)
Q Consensus 42 ~~~~~~~~l~~~l~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~ 120 (881)
++..++.++++.|...|+ .++..+++.++..|.+.|.+++|.++|+.|+. ||..+||.+|.+|++.|++++|.++|
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455555666666666664 34555566666666666666666666666665 66666666666666666666666666
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcC--
Q 002790 121 VKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR-- 198 (881)
Q Consensus 121 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~-- 198 (881)
++|.+.|+.||..+|+.+|.+|++.|+++.| .+++++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A----~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAM----FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 6666666666666666666666666666666 6666666666666666666666666666666666666666664
Q ss_pred --CCCeehHHHHHHHHHhCCChhHHHHHHHHhHH--cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 002790 199 --VKNYISWNMMFSGFALNFDCDGALELFKRMEL--EGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEA 274 (881)
Q Consensus 199 --~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 274 (881)
.||..+||.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 35666666666666666666666666666654 45666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHH
Q 002790 275 IAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAE 350 (881)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~ 350 (881)
|+.+|.+|++.|+.+.|..+++.|.+.|+.||..+|+.++++|++.|++++|.++|++|.+ ||..+|+++|.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666666666666666653 566666666666666
Q ss_pred cCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHH
Q 002790 351 AGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNI 430 (881)
Q Consensus 351 ~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 430 (881)
.|++++|.++|++|.+.+ ..||..+||.||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.
T Consensus 697 ~G~~eeA~~lf~eM~~~g----~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIK----LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred CCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666655 3666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 002790 431 GREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFK 510 (881)
Q Consensus 431 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 510 (881)
|.+++.+|.+.|+.||..+|++|+.++.+ ++++|..+.+.+. .|+. .......+..++|+.+|++|++.|+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~-----~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVV-----SFDS-GRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhh-----hhhc-cccccccchHHHHHHHHHHHHHCCCC
Confidence 66666666666666666666666654321 2333333222111 1110 00011112234567777777777777
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 511 PDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 511 pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
||..||+.++.++++.+..+.+..+++.|. ..+..|+..+|+++++++++. .++|..++++|
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 777777777766656666666666666554 224555566666666665321 34566666666
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-56 Score=536.78 Aligned_cols=453 Identities=20% Similarity=0.285 Sum_probs=375.6
Q ss_pred HHhhChhhHHHHHHHHHHhC-CCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHHHHHHHHHHcCCChhHH
Q 002790 39 QQCKTIHQLKQVHNQLIVTG-ANASAFLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLWNSILRVNVSNGLYENA 116 (881)
Q Consensus 39 ~~c~~~~~~~~l~~~l~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A 116 (881)
..++...++.+++..|...+ ..|+..+|+.++.+|++.++++.|.+++..+.. +..||+.+||.++..|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34455666677788887654 678999999999999999999999999988876 7788999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 002790 117 LKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDK 196 (881)
Q Consensus 117 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 196 (881)
.++|++|. .||..+|++++.+|++.|++++| ..++++|.+.|+.|+..+|+.++.++++.|..+.+.+++..
T Consensus 178 ~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A----~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 178 RRLFDEMP----ERNLASWGTIIGGLVDAGNYREA----FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHH----HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999996 47889999999999999999999 99999999999999999999999999999999999998877
Q ss_pred cC----CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 002790 197 VR----VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGA 272 (881)
Q Consensus 197 m~----~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 272 (881)
+. .+|..+||+||.+|++.|++++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 64 4688899999999999999999999999997 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcC
Q 002790 273 EAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAG 352 (881)
Q Consensus 273 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 352 (881)
.||+.++.+|++.|.++.|.++++.|.+.|+++|..+|++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred ChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH-CCCCCchhHHHHHHHHHhhhchHHHH
Q 002790 353 LCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL-AKVVANSVTISGLLSVCAESAALNIG 431 (881)
Q Consensus 353 ~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a 431 (881)
+.++|.++|++|.+.|. .||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.+++++++.|++++|
T Consensus 406 ~~~~A~~lf~~M~~~g~----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 406 RGTKAVEMFERMIAEGV----APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred CHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 88888888888887774 77777777777777777777777777777765 46777777777777666666666666
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002790 432 REIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAG 508 (881)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 508 (881)
.++++. .++.|+..+|++|+.+|++.|+++.|..+++++.+ | +..+|+.|+..|++.|++++|.+++++|.+.|
T Consensus 482 ~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 482 YAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 666543 34566666666666666666666666666665542 2 34566666666666666666666666666666
Q ss_pred CC
Q 002790 509 FK 510 (881)
Q Consensus 509 ~~ 510 (881)
++
T Consensus 559 ~~ 560 (697)
T PLN03081 559 LS 560 (697)
T ss_pred Cc
Confidence 54
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-31 Score=331.17 Aligned_cols=579 Identities=15% Similarity=0.069 Sum_probs=410.5
Q ss_pred ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHH
Q 002790 43 TIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVK 122 (881)
Q Consensus 43 ~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~ 122 (881)
........+....+.. +.+...+..+...+.+.|++++|...++.+....+.+...|+.+...+.+.|++++|.++|++
T Consensus 310 ~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 310 NLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333344444444332 234555666677777777777777777776655556677777777777777777777777777
Q ss_pred HHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---
Q 002790 123 MRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV--- 199 (881)
Q Consensus 123 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~--- 199 (881)
+.+.. +.+...+..+...+...|+.++| ...+..+.+... .+......++..|.+.|++++|.++++++..
T Consensus 389 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A----~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 462 (899)
T TIGR02917 389 ATELD-PENAAARTQLGISKLSQGDPSEA----IADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHhCCChHHH----HHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 76653 23444556666666777777777 666666655432 2234455666777777888888887777652
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002790 200 KNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVL 279 (881)
Q Consensus 200 ~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 279 (881)
.+...|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 345677777777888888888888888777553 3344456667777778888888888888777653 33556666777
Q ss_pred HHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHH
Q 002790 280 SVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDE 356 (881)
Q Consensus 280 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 356 (881)
..+...|+.+.+..+++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 77777778888887777776653 44556677777888888888888888877764 355677778888888888888
Q ss_pred HHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHH
Q 002790 357 AVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHG 436 (881)
Q Consensus 357 A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 436 (881)
|...|+++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++
T Consensus 620 A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 620 AVSSFKKLLALQ-----PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred HHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888877654 3455667777788888888888888888877642 3346677777777788888888888888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 002790 437 HVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV 514 (881)
Q Consensus 437 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 514 (881)
.+.+.. +.+...+..+...|.+.|++++|.+.|+.+.. ++..++..++..+.+.|++++|.+.++++.+.. +.+..
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 777664 34566677777788888888888888877653 444666677777888888888888888877753 44566
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCR 592 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~ 592 (881)
.+..+...|...|++++|.+.|+++.+. .++++..++.+...+...|+ ++|+++++++ ...| +..++..+...+.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 7777777788888888888888888732 12346777788888888888 7788887776 3333 3456667777778
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 593 MHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 593 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
..|++++|...++++++..|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.7e-30 Score=318.62 Aligned_cols=557 Identities=13% Similarity=0.063 Sum_probs=437.3
Q ss_pred HHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCc
Q 002790 69 VLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSF 148 (881)
Q Consensus 69 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 148 (881)
+...+...|++++|...|+......+.+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH
Confidence 34455566777777777766554444566667777777777777777777777776653 34555667777777777777
Q ss_pred ccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CeehHHHHHHHHHhCCChhHHHHHH
Q 002790 149 RFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVK---NYISWNMMFSGFALNFDCDGALELF 225 (881)
Q Consensus 149 ~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~A~~l~ 225 (881)
++| ...++.+.+.. +.+...+..+...+...|++++|.+.|++.... +...+..++..+.+.|++++|.+++
T Consensus 380 ~~A----~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 380 EKA----AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred HHH----HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 777 66676666543 234556667777777778888888777766432 3345666777788888888888888
Q ss_pred HHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCC
Q 002790 226 KRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFED 305 (881)
Q Consensus 226 ~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 305 (881)
+++.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.+..+++.+.... +.
T Consensus 455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 8887543 4566778888888888888888888888887653 2344556667777788888888888888887654 55
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHH
Q 002790 306 YVFVKNALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSA 382 (881)
Q Consensus 306 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~ 382 (881)
+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++++.+.. +.+...|..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~ 606 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-----PDSPEAWLM 606 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHHHHHH
Confidence 677888888888889999999998888754 345677788888899999999999999888754 556778889
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 002790 383 VIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGC 462 (881)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 462 (881)
+...|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999987653 3455677788888888999999999999888753 3456788888999999999
Q ss_pred HHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 002790 463 LEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMM 539 (881)
Q Consensus 463 ~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m 539 (881)
+++|.++++.+.+. +...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|.+.++.+
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988643 6677888888899999999999999999886 455577888889999999999999999998
Q ss_pred HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 540 VREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 540 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
.+. ...+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ .+|+..++++.+..|.++..
T Consensus 763 l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 763 LKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 843 2345788899999999999999999999988 233567788999999999999 88999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 618 YMLLSNIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 618 ~~~l~~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
+..++.+|.+.|++++|.++++++.+.+.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999988653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6.2e-21 Score=239.89 Aligned_cols=580 Identities=10% Similarity=0.010 Sum_probs=414.3
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHH----------------HHHHHHHHcCC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLW----------------NSILRVNVSNG 111 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------n~li~~~~~~g 111 (881)
++.+..+...- +-++.++..++..+.+.|+.++|.+.+++.....|.+...+ -.+...+.+.|
T Consensus 48 ~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 48 RQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred HHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 44444443322 23577888889999999999999999998877555555443 23344688899
Q ss_pred ChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 002790 112 LYENALKLYVKMRKLGVLGDGF-TFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDS 190 (881)
Q Consensus 112 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 190 (881)
++++|++.|+++.+.+ +|+.. ............++.++| ...++.+.+.. +-+...+..+...+...|+.++|
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A----~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEA----INQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHH----HHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH
Confidence 9999999999998753 34432 111112222345788888 88888887763 44667788888999999999999
Q ss_pred HHHHhhcCCCCe------e-----------------hHH----------------------------------HHHHHHH
Q 002790 191 FKLFDKVRVKNY------I-----------------SWN----------------------------------MMFSGFA 213 (881)
Q Consensus 191 ~~l~~~m~~~~~------~-----------------~y~----------------------------------~li~~~~ 213 (881)
.+.|+++..... . .+. .....+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 999987632110 0 000 1123355
Q ss_pred hCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHH---------HHHH---HH
Q 002790 214 LNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEV-GAEA---------IAVV---LS 280 (881)
Q Consensus 214 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t---------~~~l---l~ 280 (881)
..|++++|...|++..... +.+...+..+...+.+.|++++|+..|++..+..-.. +... |... -.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 6788888888888887663 3356678888888888888888888888877654221 1111 1111 23
Q ss_pred HHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHH
Q 002790 281 VCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEA 357 (881)
Q Consensus 281 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A 357 (881)
.+.+.|+.+.|...++.+.+.. +.+...+..+...|...|++++|++.|++..+ | +...+..+...|. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 4567788888888888887763 45566777788888888888888888888764 3 3445656666664 4567888
Q ss_pred HHHHHHHHHccCCCC----CCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHhhhchHHHHH
Q 002790 358 VEVFSQLEKLDGGSM----ERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN-SVTISGLLSVCAESAALNIGR 432 (881)
Q Consensus 358 ~~l~~~m~~~~~~~~----~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 432 (881)
...++.+........ .......+..+...+...|++++|.+.|++..+. .|+ ...+..+...+.+.|++++|.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 888776543210000 0001223555667788899999999999999875 454 456667778889999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC----CH---------HHHHHHHHHHHHcCChHHHHH
Q 002790 433 EIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK----DL---------ITWNSMISGYGMNGLGENALA 499 (881)
Q Consensus 433 ~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----d~---------~~~~~li~~~~~~g~~~~A~~ 499 (881)
..++.+.+.. +.++..+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|.+
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999988754 234455555556678889999999999987642 11 112345667888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 002790 500 TFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PM 577 (881)
Q Consensus 500 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~ 577 (881)
+++. .+++...+..+...+.+.|++++|+..|++..+ ..|+ ...+..++..|...|++++|++.++.. ..
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8872 245556778888899999999999999999983 4565 788999999999999999999999987 34
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc------chHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCcc
Q 002790 578 EPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT------GSYMLLSNIYAASGRWEDAAKVRISAKT-KGLKK 648 (881)
Q Consensus 578 ~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~m~~-~g~~~ 648 (881)
.|+ ...+..+..++...|++++|.++++++++..|+++ ..+..++.++.+.|++++|++.|++... .|+.+
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 444 45677778888999999999999999998866544 3666779999999999999999998863 34543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.9e-21 Score=241.71 Aligned_cols=557 Identities=11% Similarity=0.045 Sum_probs=341.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchH----------
Q 002790 66 AARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTF---------- 135 (881)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---------- 135 (881)
.-..++.+...++.+.|.+.++++..-.|.|+..+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 34456777888999999999998877667789999999999999999999999999998864 444333
Q ss_pred -------HHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhcCCC---Ceeh
Q 002790 136 -------PLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHI-VNELIGMYAKMGQMSDSFKLFDKVRVK---NYIS 204 (881)
Q Consensus 136 -------~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~-~~~Li~~~~~~g~~~~A~~l~~~m~~~---~~~~ 204 (881)
..+.+.+...|++++| .+.++.+.+.. +++... ...+.......|+.++|.+.|+++... +...
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA----~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~ 183 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEA----LASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGL 183 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHH----HHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHH
Confidence 2223457788999999 88888887653 333321 112222223459999999999988743 4457
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHcCCC----------------CCHh---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002790 205 WNMMFSGFALNFDCDGALELFKRMELEGLE----------------PNFV---TWTSLLSSHARCGRLEETMDLFDMMRK 265 (881)
Q Consensus 205 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------------pd~~---ty~~li~~~~~~g~~~~A~~l~~~m~~ 265 (881)
+..+...+...|+.++|++.|+++...... ++.. .+...+..+-.....+.|...+.++..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 788888899999999999999998653210 0000 011111111111112233333333322
Q ss_pred cCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--CCh---hH
Q 002790 266 RGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--KNI---VS 340 (881)
Q Consensus 266 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~~~---~~ 340 (881)
....|+... ...-..+...|+.+.|...++...+.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..
T Consensus 264 ~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 264 QLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred hccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 222222111 111223344555556665555555432 33445555555666666666666666655543 211 11
Q ss_pred HHH------------HHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 002790 341 WNA------------LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV 408 (881)
Q Consensus 341 ~~~------------li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (881)
|.. ....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++..+.
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-- 414 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-- 414 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 111 1223445566666666666655533 233444555555566666666666666655543
Q ss_pred CCc-hhHHHH------------------------------------------HHHHHhhhchHHHHHHHHHHHHHcCCCC
Q 002790 409 VAN-SVTISG------------------------------------------LLSVCAESAALNIGREIHGHVVRVSMNK 445 (881)
Q Consensus 409 ~p~-~~t~~~------------------------------------------ll~~~~~~g~~~~a~~i~~~~~~~g~~~ 445 (881)
.|+ ...+.. +...+...|++++|.+.+++.++... .
T Consensus 415 ~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~ 493 (1157)
T PRK11447 415 DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-G 493 (1157)
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 222 222222 22333445566666666666555432 2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--------
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-------- 514 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------- 514 (881)
++.++..+...|.+.|++++|...++++.+ | +...+..+...+...++.++|+..++++......++..
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 344455555666666666666666665532 2 33333333334445566666666655543221111111
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 002790 515 -AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSC 591 (881)
Q Consensus 515 -t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~ 591 (881)
.+......+...|+.++|..+++. ..++...+..+.+.+.+.|++++|++.|++. ...| +...+..+...+
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD 647 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 122344556677777777777651 1334667788899999999999999999988 4444 467888999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...|++++|++.++++.+..|+++..+..++.++.+.|++++|.++++++.+..
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999999999987653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2e-18 Score=207.49 Aligned_cols=550 Identities=12% Similarity=0.045 Sum_probs=326.3
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHH-
Q 002790 63 AFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRA- 141 (881)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a- 141 (881)
+.++..|.+.|.+.|+.++|+..+++.....|.|...+..+ ..+ +++++|..+++++.+.. +-+...+..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~ 152 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHh
Confidence 44555566666666666666666666555444444444443 111 55566666666665542 2223333333332
Q ss_pred -------HHccCCcccccchHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChHHHHHHHhhcCCCCe---ehHHHHHH
Q 002790 142 -------CKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNEL-IGMYAKMGQMSDSFKLFDKVRVKNY---ISWNMMFS 210 (881)
Q Consensus 142 -------~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~L-i~~~~~~g~~~~A~~l~~~m~~~~~---~~y~~li~ 210 (881)
|.+. +.+ .+.++ .......|+..+.... ...|.+.|++++|++.+.++.+.++ .-...|-.
T Consensus 153 ~~~~~l~y~q~---eqA----l~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ 224 (987)
T PRK09782 153 VGQNALRLAQL---PVA----RAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFD 224 (987)
T ss_pred hccchhhhhhH---HHH----HHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2222 333 33333 2222222334433333 5666666666666666665553322 22333444
Q ss_pred HHHh-CCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccccc
Q 002790 211 GFAL-NFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIE-VGAEAIAVVLSVCADLAAD 288 (881)
Q Consensus 211 ~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~ 288 (881)
.|.+ .++ +++..+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |+..++--++.-.....
T Consensus 225 ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~-- 297 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP-- 297 (987)
T ss_pred HHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--
Confidence 4554 244 555555332 12344555556666666666666666666665543222 33333322221111110
Q ss_pred hhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHh-----------------------------hccCC--
Q 002790 289 HMGKVIHGFVIKGGFEDY-VFVKNALICVYGKHGDVKVAQNLFS-----------------------------EIEEK-- 336 (881)
Q Consensus 289 ~~a~~i~~~~~~~g~~~~-~~~~~~Li~~~~~~g~~~~A~~~~~-----------------------------~m~~~-- 336 (881)
..+..-+.. .+.++ ....-.++..+.+.++++.++++.. .|-..
T Consensus 298 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 298 VQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred hhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 000000000 00000 0111123455555666655554432 22111
Q ss_pred -ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCC---hHHHHHHH------------
Q 002790 337 -NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGR---GEEALDLF------------ 400 (881)
Q Consensus 337 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~---~~~A~~l~------------ 400 (881)
+....--+--...+.|+.++|.++|++...... ...++.....-++..|.+.+. ..++..+-
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 112222222334567888899998888876311 113344455577778877766 44443331
Q ss_pred HHH----------HH-CCCCC---chhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 002790 401 RKM----------QL-AKVVA---NSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEG 466 (881)
Q Consensus 401 ~~m----------~~-~g~~p---~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 466 (881)
.+. .. .+..| +...+..+..++.. ++.++|...+....... |+......+...+...|++++|
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHH
Confidence 111 11 12223 34455555555554 78888998777776654 4544444445555789999999
Q ss_pred HHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 467 HLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 467 ~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
...|+++.. ++...+..+...+.+.|+.++|...+++..+.. +++...+..+...+...|++++|...+++.. .
T Consensus 529 i~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~ 604 (987)
T PRK09782 529 LAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---N 604 (987)
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---H
Confidence 999998754 344567777788899999999999999998864 2233344444455566799999999999998 5
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHH
Q 002790 545 IEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLS 622 (881)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 622 (881)
+.|+...|..+...+.+.|++++|++.+++. ...|+ ...++.+...+...|++++|+..++++++..|.++..+..++
T Consensus 605 l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 605 IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6788889999999999999999999999988 55565 457777778899999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 002790 623 NIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 623 ~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
.+|.+.|++++|...+++..+..
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=5.9e-18 Score=203.45 Aligned_cols=560 Identities=10% Similarity=-0.003 Sum_probs=399.5
Q ss_pred CCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHH-----HcCCChhHHHHHHHHHHhCCCCCCcc
Q 002790 59 ANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVN-----VSNGLYENALKLYVKMRKLGVLGDGF 133 (881)
Q Consensus 59 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~ 133 (881)
..|+...|..++..+ ++.++|..+++++....|.+...+..+.... .+-.+.++|.+.++ .......|+..
T Consensus 107 ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~ 182 (987)
T PRK09782 107 RHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGK 182 (987)
T ss_pred cCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcH
Confidence 456666666655333 9999999999998876666777776666651 22334499999998 55544444555
Q ss_pred hHHHH-HHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhcCCCCeehHHHHHHH
Q 002790 134 TFPLV-IRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAK-MGQMSDSFKLFDKVRVKNYISWNMMFSG 211 (881)
Q Consensus 134 t~~~l-l~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~~~~~~~y~~li~~ 211 (881)
+.... .+.+...++++++ ..++..+.+.+. .+..-...|-.+|.. .++ +++..+++...+.+...+..+...
T Consensus 183 vL~L~~~rlY~~l~dw~~A----i~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~ 256 (987)
T PRK09782 183 TLRTDLLQRAIYLKQWSQA----DTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATA 256 (987)
T ss_pred HHHHHHHHHHHHHhCHHHH----HHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHH
Confidence 55555 8899999999999 999999999863 445556777778888 477 889998776555688899999999
Q ss_pred HHhCCChhHHHHHHHHhHHcCCC-CCHhHHHHHHHHHHhcCChH-----------------HHHHHHHHHHHc-------
Q 002790 212 FALNFDCDGALELFKRMELEGLE-PNFVTWTSLLSSHARCGRLE-----------------ETMDLFDMMRKR------- 266 (881)
Q Consensus 212 ~~~~g~~~~A~~l~~~m~~~g~~-pd~~ty~~li~~~~~~g~~~-----------------~A~~l~~~m~~~------- 266 (881)
|.+.|+.++|.++++++...-.. |+..+|--++. +.+... -.+++.+...++
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999998754323 66666555543 333221 011111211111
Q ss_pred ---CCCCCHHHHHHHHHHHh--ccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--C---
Q 002790 267 ---GIEVGAEAIAVVLSVCA--DLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--K--- 336 (881)
Q Consensus 267 ---g~~p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~--- 336 (881)
.+.|.... ..+.... ..+...++...+..+.+. .+.+....--+.-...+.|+.++|.++|+..-. +
T Consensus 334 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 334 KLLATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHhcCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 13333332 1222221 223444444444444443 133444444455566788999999999998765 1
Q ss_pred -ChhHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHccCCCCCCC--ChhhHHHHHHHHH
Q 002790 337 -NIVSWNALITSYAEAGL---CDEAVEV----------------------FSQLEKLDGGSMERP--NVISWSAVIGAFA 388 (881)
Q Consensus 337 -~~~~~~~li~~~~~~g~---~~~A~~l----------------------~~~m~~~~~~~~~~p--~~~~y~~li~~~~ 388 (881)
+....+-++..|.+.+. ..++..+ ++.....- +..++ +...|..+..++.
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHH
Confidence 22334466677776655 3333222 11111111 11234 6677888888887
Q ss_pred HCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
. +++++|...+.+.... .|+......+...+...|++++|...++.+... +|+...+..+...+.+.|+.++|..
T Consensus 489 ~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 7 8999999988887765 477655445555567899999999999987654 3444556677788999999999999
Q ss_pred HHHhcccCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 469 VFEQIEKKDLITWNS---MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 469 ~~~~m~~~d~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
.++...+.+...++. +.......|++++|+..+++..+. .|+...+..+..++.+.|++++|...+++.. ..
T Consensus 564 ~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l 638 (987)
T PRK09782 564 WLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---EL 638 (987)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---Hh
Confidence 999887654333333 333344559999999999999986 6788899999999999999999999999998 55
Q ss_pred CCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHH
Q 002790 546 EPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLS 622 (881)
Q Consensus 546 ~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 622 (881)
.|+ ...++.+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|.+..+....+
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 776 778889999999999999999999987 4555 4568899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 623 NIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 623 ~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
+...+..+++.|.+-+++....++
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999998887665543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2.8e-18 Score=182.29 Aligned_cols=281 Identities=15% Similarity=0.163 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch-hHHHHH
Q 002790 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS-VTISGL 418 (881)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 418 (881)
.|+.+...+-..|+...|+..|++..+.. +.-...|-.|-..|...+.+++|...|.+.... .|+. ..+..+
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkld-----P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNl 292 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLD-----PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNL 292 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCC-----CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccce
Confidence 44444444444455445554444444422 111234444555555555555555555444432 3332 233333
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChH
Q 002790 419 LSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGE 495 (881)
Q Consensus 419 l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~ 495 (881)
...|-..|.++.|...+++.++.. +.-+..|+.|..++-..|++.+|...+++... + ...+.+.|...|...|..+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 333444555555555555544432 11245677777777777888888888877653 2 4567788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 496 NALATFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 496 ~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
+|..+|....+. .|.- ..++.|...|-+.|++++|+..+++.. .+.|+ ...|+.+...|...|+.+.|...+.
T Consensus 372 ~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 372 EATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred HHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 999999988874 4553 478889999999999999999999988 78998 7889999999999999999999998
Q ss_pred hC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHH
Q 002790 574 NM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWED 633 (881)
Q Consensus 574 ~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 633 (881)
+. .+.|.- ...+.|...+...|+..+|+.-|+.++++.|+.+..|..++.++.--.+|.+
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 87 666653 4788999999999999999999999999999999999999988776666665
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=3.2e-18 Score=181.91 Aligned_cols=282 Identities=14% Similarity=0.153 Sum_probs=241.4
Q ss_pred HcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch-hHHHHHHHHHhhhchH
Q 002790 350 EAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS-VTISGLLSVCAESAAL 428 (881)
Q Consensus 350 ~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 428 (881)
..|+.++|...+-+..+.. +--.+.|+.|...+-..|+...|+..|++..+. .|+- ..|-.|-..+...+.+
T Consensus 196 a~Grl~ea~~cYlkAi~~q-----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhcccchhHHHHHHHHhhC-----CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcc
Confidence 3566777777666666532 234578999999999999999999999999854 5653 4677788888888888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002790 429 NIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMI 505 (881)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 505 (881)
+.|...+....... +....++..+...|...|.++.|+..+++..+. =...|+.|..++-..|++.+|.+.+.+.+
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 88888888776643 224567777888899999999999999998753 35799999999999999999999999999
Q ss_pred HcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-
Q 002790 506 EAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA- 581 (881)
Q Consensus 506 ~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~- 581 (881)
.. .|+. ...+.|...+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+..+++. .++|+.
T Consensus 348 ~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 348 RL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred Hh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 86 5554 488999999999999999999999988 67888 678899999999999999999999987 888885
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+|+.+...|...|+.+.|++.+.+++..+|.-+..+..|+.+|..+|++.+|+.-++...+-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999999999999999999999999988763
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=5.3e-16 Score=183.55 Aligned_cols=250 Identities=12% Similarity=0.039 Sum_probs=205.4
Q ss_pred CCChHHHHHHHHHHHHCC-CCCc-hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 002790 390 NGRGEEALDLFRKMQLAK-VVAN-SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGH 467 (881)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 467 (881)
.+++++|.+.|++....+ ..|+ ...+..+...+...|++++|...++..++.. +.+...+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999998765 3343 3456666777788999999999999998763 223567888889999999999999
Q ss_pred HHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 468 LVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 468 ~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
..|++..+ .+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 99998754 367889999999999999999999999999863 33456777888899999999999999999983
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002790 545 IEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-Y-------VWGTLLNSCRMHKNTDVAEAMASQIFGLITET 614 (881)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~-------~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 614 (881)
..|+ ...|+.+...+...|++++|++.|++. ...|+. . .++.....+...|++++|+.+++++++++|.+
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3565 788999999999999999999999986 444421 1 12222223445799999999999999999999
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 615 TGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
...+..++.+|.+.|++++|++.|++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=2.6e-17 Score=184.54 Aligned_cols=267 Identities=13% Similarity=0.094 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc---hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 002790 379 SWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN---SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLN 455 (881)
Q Consensus 379 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (881)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..+++.++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444444444444444444433221111 1223333444444444444444444444321 223445555555
Q ss_pred HHHhcCCHHHHHHHHHhcccCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 456 MYMKCGCLEEGHLVFEQIEKKD--------LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~d--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
.|.+.|++++|.+.++.+.+.+ ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 6666666666666665554321 1134556667777888888888888887653 223456677777888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002790 528 LVNEGRRIFDMMVREFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMA 604 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 604 (881)
++++|.++++++.+. .|+ ..+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|..++
T Consensus 229 ~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 229 DYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888732 343 456777888888888888888888887 45677777788888889999999999999
Q ss_pred HHHhhcCCCCcchHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCccCCc
Q 002790 605 SQIFGLITETTGSYMLLSNIYAA---SGRWEDAAKVRISAKTKGLKKVAG 651 (881)
Q Consensus 605 ~~~~~~~p~~~~~~~~l~~~~~~---~g~~~eA~~~~~~m~~~g~~~~~~ 651 (881)
+++.+..|++. .+..+...+.. .|+.++++.++++|.++++++.|.
T Consensus 306 ~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 306 REQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99988888765 55556666554 568999999999999988888775
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=6.9e-17 Score=181.06 Aligned_cols=300 Identities=18% Similarity=0.130 Sum_probs=178.4
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch
Q 002790 210 SGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH 289 (881)
Q Consensus 210 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 289 (881)
..+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------------- 104 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE----------------- 104 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-----------------
Confidence 34556777888888888887663 234456777778888888888888888877664311110
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 290 MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 290 ~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
....++..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+
T Consensus 105 ---------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 105 ---------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 0123456667777777778888777777765 3456677777777777888888777777776
Q ss_pred ccCCCCCCCC---hhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC
Q 002790 367 LDGGSMERPN---VISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM 443 (881)
Q Consensus 367 ~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 443 (881)
.+. ..+. ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+.
T Consensus 170 ~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 170 LGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred hcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 542 1111 1234556666777777777777777776542 22233444455555555666666665555554432
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002790 444 NKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLS 521 (881)
Q Consensus 444 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 521 (881)
.....+++.++..|.+.|++++|...++++.+ |+...+..++..+.+.|++++|..+|+++.+. .|+..++..++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 22234455555566666666666665555532 33344455555566666666666666655553 455555555555
Q ss_pred HHHc---cCCHHHHHHHHHHHHHhcCCCCCh
Q 002790 522 ACSH---AGLVNEGRRIFDMMVREFRIEPQM 549 (881)
Q Consensus 522 a~~~---~g~~~~A~~l~~~m~~~~~~~p~~ 549 (881)
.+.. .|+.+++..++++|.++ ++.|++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 5443 33555566666655532 444443
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1e-14 Score=164.12 Aligned_cols=538 Identities=15% Similarity=0.160 Sum_probs=386.5
Q ss_pred hhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCcchHHHHHHHHHccCCcccccchHH
Q 002790 79 LFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL--GVLGDGFTFPLVIRACKFMGSFRFRFSFGQ 156 (881)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 156 (881)
++.|.+.|.......|+|+...-.-.......|++..|+.+|...... ..+||... .+-.++.+.++.+.| .
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a----~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKA----L 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhH----H
Confidence 578888888877767777776655555666788999999999996543 34455432 122345677888888 6
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHH---hc---CChHHHHHHHhhc---CCCCeehHHHHHHHHHhCCChhHHHHHHHH
Q 002790 157 IVHNHVLQMGFQGNVHIVNELIGMYA---KM---GQMSDSFKLFDKV---RVKNYISWNMMFSGFALNFDCDGALELFKR 227 (881)
Q Consensus 157 ~~~~~m~~~g~~~~~~~~~~Li~~~~---~~---g~~~~A~~l~~~m---~~~~~~~y~~li~~~~~~g~~~~A~~l~~~ 227 (881)
..|...++. .| ...++++.... .. ..+..+..++... ...|++..+.|...|...|+++.++++...
T Consensus 220 ~a~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 220 LAFERALQL--DP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 777666654 23 33333332221 11 2344555555543 245888999999999999999999999998
Q ss_pred hHHcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccccchhHHHHHHHHHhcCC
Q 002790 228 MELEGLE--PNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEA--IAVVLSVCADLAADHMGKVIHGFVIKGGF 303 (881)
Q Consensus 228 m~~~g~~--pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 303 (881)
+...... --..+|-.+.++|-..|++++|...|.+-.+. .++..+ +.-+-..+.+.|+++.+...|+.+.+. .
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~ 372 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-L 372 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-C
Confidence 8755311 12335778899999999999999999766554 455433 345567888999999999999998876 4
Q ss_pred CCcHHHHHHHHHHHHhcC----CHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH----HccCCCC
Q 002790 304 EDYVFVKNALICVYGKHG----DVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLE----KLDGGSM 372 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~~~~~ 372 (881)
|.+..+...|...|...+ ..+.|..++.+..++ |...|-.+...|.+..-+. ++..|.... ..+
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~---- 447 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKG---- 447 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcC----
Confidence 666777788888887775 567788888777663 5566766666666544443 366665544 333
Q ss_pred CCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC---CCCCch-----hHHH-HHHHHHhhhchHHHHHHHHHHHHHcCC
Q 002790 373 ERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA---KVVANS-----VTIS-GLLSVCAESAALNIGREIHGHVVRVSM 443 (881)
Q Consensus 373 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t~~-~ll~~~~~~g~~~~a~~i~~~~~~~g~ 443 (881)
..+.....|.+...+...|.+++|...|.+.... ...+|. .|.. .+-...-..++.+.|.+.|..+++...
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 3577788999999999999999999999988755 223333 2222 223334456789999999999987531
Q ss_pred CCchhHHHHHHHHHHhc-------CCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC
Q 002790 444 NKNILVQNGLLNMYMKC-------GCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEA-GFKPD 512 (881)
Q Consensus 444 ~~~~~~~~~Li~~y~~~-------g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd 512 (881)
..|++|.+. +...+|...+....+ .++..|.-+...+.+...+..|.+-|+...+. ...+|
T Consensus 528 --------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 528 --------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred --------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 234555444 567788888887754 46778888887888888888888877766643 22467
Q ss_pred HHHHHHHHHHHHcc------------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--C
Q 002790 513 GVAFVAVLSACSHA------------GLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNMP--M 577 (881)
Q Consensus 513 ~~t~~~ll~a~~~~------------g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m~--~ 577 (881)
..+..+|...|... +..+.|+++|.+.+ ...| |...-|-+.-.++..|++.+|.++|.+.. .
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 77777777755432 44778888888887 3455 57777888889999999999999999883 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 578 EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 578 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..+..+|..+..+|...|++..|+++|+...+. ...+..+...|+.++.+.|++.+|.+.........
T Consensus 677 ~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 677 SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 235568999999999999999999999999877 34467888899999999999999999988776643
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=9.5e-15 Score=176.08 Aligned_cols=389 Identities=9% Similarity=0.004 Sum_probs=239.5
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch
Q 002790 210 SGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH 289 (881)
Q Consensus 210 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 289 (881)
......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++..+..
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~---------------------- 79 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE---------------------- 79 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Confidence 33444555555555555554311 2333345555555555555555555555544431
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 290 MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 290 ~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
|.+...+..+...+...|++++|...+++..+ | +.. +..+...+...|+.++|+..++++.+
T Consensus 80 --------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 80 --------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred --------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22233334444555555555555555555543 2 223 55555555556666666666666655
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch------hHHHHHHHHH-----hhhchH---HHHH
Q 002790 367 LDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS------VTISGLLSVC-----AESAAL---NIGR 432 (881)
Q Consensus 367 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~-----~~~g~~---~~a~ 432 (881)
.. +.+...+..+...+...+..++|+..++.... .|+. .....++... ...+.+ +.|.
T Consensus 145 ~~-----P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 145 RA-----PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred hC-----CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 33 22333444455555556666666665554432 2221 0011111111 112223 5566
Q ss_pred HHHHHHHHc-CCCCchh-HH----HHHHHHHHhcCCHHHHHHHHHhcccCC---H-HHHHHHHHHHHHcCChHHHHHHHH
Q 002790 433 EIHGHVVRV-SMNKNIL-VQ----NGLLNMYMKCGCLEEGHLVFEQIEKKD---L-ITWNSMISGYGMNGLGENALATFE 502 (881)
Q Consensus 433 ~i~~~~~~~-g~~~~~~-~~----~~Li~~y~~~g~~~~A~~~~~~m~~~d---~-~~~~~li~~~~~~g~~~~A~~l~~ 502 (881)
+.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+ . .....+...|...|++++|+..|+
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666643 2222221 11 111234456788999999999887542 1 112225678888999999999999
Q ss_pred HHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHHcCCHH
Q 002790 503 EMIEAGFKP---DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR----------IEPQ---MEHYACMVDLLGRAGLLQ 566 (881)
Q Consensus 503 ~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~ 566 (881)
++.+..... .......+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 987643111 124566677788899999999999998874310 1123 234567788899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 567 EASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 567 eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+|+++++++ ...| +...+..+...+...|+.++|++.++++++.+|++...+..++..+.+.|++++|..+++++.+.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999987 3334 46688888899999999999999999999999999999999999999999999999999998875
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=3.1e-15 Score=176.43 Aligned_cols=346 Identities=8% Similarity=-0.031 Sum_probs=243.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 002790 240 WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGK 319 (881)
Q Consensus 240 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~ 319 (881)
...++..+.+.|++++|..+++...... +.+...+..++.....
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~------------------------------------p~~~~~l~~l~~~~l~ 88 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA------------------------------------KNGRDLLRRWVISPLA 88 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC------------------------------------CCchhHHHHHhhhHhh
Confidence 4456667777888888888877776653 2223344444455556
Q ss_pred cCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 320 HGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
.|++++|...|+++.+ | +...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-----P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-----SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCChHHH
Confidence 7777777777777764 2 34566666777777777777777777777643 34455677777777777777777
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK 476 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~ 476 (881)
...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...+++....
T Consensus 164 ~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777765543 2222222222335667777777777777766543334444455567778888888888888877542
Q ss_pred ---CHHHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-
Q 002790 477 ---DLITWNSMISGYGMNGLGEN----ALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ- 548 (881)
Q Consensus 477 ---d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~- 548 (881)
+...+..+...+...|++++ |+..|++..+.. +.+...+..+...+...|++++|...+++..+ ..|+
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~ 317 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDL 317 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 56778888888888888875 789999988763 33455888888899999999999999999883 4565
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYV-WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~-~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
...+..+...|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...++++.+..|.+.
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~----------- 386 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL----------- 386 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------
Confidence 567778889999999999999999887 45566544 33455668899999999999999999988864
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 002790 627 ASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 627 ~~g~~~eA~~~~~~m~~~ 644 (881)
...+++|...+.+..+.
T Consensus 387 -~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 387 -PQSFEEGLLALDGQISA 403 (656)
T ss_pred -hhhHHHHHHHHHHHHHh
Confidence 34556777777766654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=5.8e-15 Score=174.16 Aligned_cols=322 Identities=13% Similarity=0.023 Sum_probs=265.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHH
Q 002790 312 ALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388 (881)
Q Consensus 312 ~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~ 388 (881)
..+..+.+.|++++|..+++.... .+...+..++.+....|++++|...|+++.+.. +.+...+..+...+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-----P~~~~a~~~la~~l~ 121 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-----VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHH
Confidence 355667789999999999998875 344566667778888999999999999999865 455678888899999
Q ss_pred HCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
+.|++++|...++++.+.. +.+...+..+...+...|+.++|...+..+......+ ...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998752 3345677788888999999999999999887765433 3333333 34788999999999
Q ss_pred HHHhcccC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHH
Q 002790 469 VFEQIEKK----DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNE----GRRIFDMMV 540 (881)
Q Consensus 469 ~~~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----A~~l~~~m~ 540 (881)
.++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987643 33445556778889999999999999999864 3456678888999999999986 899999988
Q ss_pred HhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 541 REFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 541 ~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
.+.|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..
T Consensus 278 ---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 ---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred ---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 45676 678999999999999999999999987 44555 4577778888999999999999999999999998877
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 618 YMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 618 ~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
+..++.++.+.|++++|.+.+++..+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7778999999999999999999987764
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=3.3e-13 Score=151.31 Aligned_cols=561 Identities=13% Similarity=0.091 Sum_probs=374.6
Q ss_pred HHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCccccc
Q 002790 73 YARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRF 152 (881)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 152 (881)
+...|++++|.+++.++.+..|.+...|..|...|-..|+.+++...+-..-... +-|..-|..+-....+.|++++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA- 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA- 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH-
Confidence 3344999999999999988888899999999999999999999987665544332 33556777787888889999999
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCe-e-------hHHHHHHHHHhCCChhHHHHH
Q 002790 153 SFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNY-I-------SWNMMFSGFALNFDCDGALEL 224 (881)
Q Consensus 153 ~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~-------~y~~li~~~~~~g~~~~A~~l 224 (881)
.-++...++.. +++....-.-..+|-+.|+...|.+-|.++-..++ + .--.+++.+...++-+.|.+.
T Consensus 227 ---~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 227 ---RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred ---HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999988874 44555556667889999999999999988764332 1 222345667777878999999
Q ss_pred HHHhHHcC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----------------------HH----HH
Q 002790 225 FKRMELEG-LEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAE----------------------AI----AV 277 (881)
Q Consensus 225 ~~~m~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------------t~----~~ 277 (881)
++.....+ -.-+...++.++..|.+..+++.|......+......+|.. .| .-
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 99887632 13344568889999999999999999998888722222221 11 12
Q ss_pred HHHHHhccccchhHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHHc
Q 002790 278 VLSVCADLAADHMGKVIHGFVIKGG--FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAEA 351 (881)
Q Consensus 278 ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~ 351 (881)
+.-+..+....+....+...+.... ...+...|.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2334456667777777777777777 445677889999999999999999999999975 4567899999999999
Q ss_pred CChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHH--------HCCCCCchhHHHHHHHHHh
Q 002790 352 GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQ--------LAKVVANSVTISGLLSVCA 423 (881)
Q Consensus 352 g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~ 423 (881)
|..++|...|+...... +-+...-..|-..+.+.|++++|++.+..+. ..+..|+..........+.
T Consensus 463 ~e~e~A~e~y~kvl~~~-----p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-----PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred hhHHHHHHHHHHHHhcC-----CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 99999999999999854 3455567778888999999999999999964 2335555555555666677
Q ss_pred hhchHHHHHHHHHHHHHcC----------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--------
Q 002790 424 ESAALNIGREIHGHVVRVS----------------------MNKNILVQNGLLNMYMKCGCLEEGHLVFEQI-------- 473 (881)
Q Consensus 424 ~~g~~~~a~~i~~~~~~~g----------------------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-------- 473 (881)
+.|+.++-..+-..|+... ..........++.+-.+.++.....+-...-
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 7787776554444443211 1111222223333333333322221111110
Q ss_pred ccCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 474 EKKDLI----TWNSMISGYGMNGLGENALATFEEMIEAGF--KPDG---VAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 474 ~~~d~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~---~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
..-++. .+.-++..+++.+++++|+.+...+.+... .++. ..-...+.+++..+++..|...++.|...++
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 011122 234456677778888888888777776432 2222 1123345566677788888877777775544
Q ss_pred CCCC---hhHHHHHHHHH-----------------------------------HHcCCHHHHHHHHHhC-CCCCCHHHHH
Q 002790 545 IEPQ---MEHYACMVDLL-----------------------------------GRAGLLQEASDIVKNM-PMEPNAYVWG 585 (881)
Q Consensus 545 ~~p~---~~~~~~li~~~-----------------------------------~~~g~~~eA~~l~~~m-~~~pd~~~~~ 585 (881)
...+ ...|++..+.. ..++.+.-|+..+-+. ...||.+..+
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~n 777 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLIN 777 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHH
Confidence 3333 23344222222 2344555565544333 2335544444
Q ss_pred HHHHH-H----------HHcCCHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 586 TLLNS-C----------RMHKNTDVAEAMASQIFGLIT--ETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 586 ~Ll~~-~----------~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++.. + .+|-..-.+..+..+-.++-. +.-.+++.++.+|-..|-..-|..+|++..+-
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 33332 1 123334455666655555522 24578889999999999999999999988774
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=3.4e-14 Score=168.15 Aligned_cols=444 Identities=10% Similarity=-0.007 Sum_probs=297.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcC--CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcC
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVR--VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g 251 (881)
+......|.+.|+++.|.+.|++.. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4455667788899999999998764 3566778888888999999999999999888763 334557888888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 002790 252 RLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFS 331 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~ 331 (881)
++++|+.-|......+-..+. ....++..... ..+........+. .+.+...+..+.. |........+..-+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 999998888766544311111 11111111111 1111111111111 1121112222222 222111111111122
Q ss_pred hccCCCh---hHHHHHHHH---HHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 002790 332 EIEEKNI---VSWNALITS---YAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL 405 (881)
Q Consensus 332 ~m~~~~~---~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 405 (881)
+..+.+. ..+..+... ....+++++|.+.|++..+.+. ..+.+...|+.+...+...|++++|+..|++..+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~--~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK--LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111 111111111 1234688999999999887542 0123456788888889999999999999999886
Q ss_pred CCCCCc-hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHH
Q 002790 406 AKVVAN-SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITW 481 (881)
Q Consensus 406 ~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~ 481 (881)
. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|
T Consensus 360 l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 360 L--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 5 454 4577777788888999999999999988764 345778888999999999999999999988642 56778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCh-h-------HHH
Q 002790 482 NSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQM-E-------HYA 553 (881)
Q Consensus 482 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~-~-------~~~ 553 (881)
..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...|++.. .+.|+. . .++
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHH
Confidence 888999999999999999999998752 3346688889999999999999999999988 344431 1 122
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH
Q 002790 554 CMVDLLGRAGLLQEASDIVKNM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRW 631 (881)
Q Consensus 554 ~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 631 (881)
.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..++++.++.+..... .+...+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~ 584 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISY 584 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHH
Confidence 2223344579999999999986 555654 478889999999999999999999999886654332 233345
Q ss_pred HHHHHHHHHHH
Q 002790 632 EDAAKVRISAK 642 (881)
Q Consensus 632 ~eA~~~~~~m~ 642 (881)
.+|.++.....
T Consensus 585 ~~a~~~~~~~~ 595 (615)
T TIGR00990 585 AEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHH
Confidence 55555544333
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.8e-13 Score=152.73 Aligned_cols=556 Identities=13% Similarity=0.055 Sum_probs=386.2
Q ss_pred HcCCChhHHHHHHhhCCC---CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH---ccCC
Q 002790 74 ARFGRLFDARNVFETAPF---DCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACK---FMGS 147 (881)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~---~~~~ 147 (881)
-..|++..|..+|..... .++||+.. .+..++++.|+.+.|+..|++..+.+. -+..++..|--.-. ....
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHH
Confidence 345899999999987432 45566543 233566788999999999999988642 12222222221111 1222
Q ss_pred cccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCC------eehHHHHHHHHHhCCChhHH
Q 002790 148 FRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKN------YISWNMMFSGFALNFDCDGA 221 (881)
Q Consensus 148 ~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~------~~~y~~li~~~~~~g~~~~A 221 (881)
+..+ .+.+...-.. -.-|+.+.+.|.+.|.-.|++..+..+...+...+ ..+|.-+.++|...|++++|
T Consensus 252 ~~~~----~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 252 YKKG----VQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHH----HHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 3333 4444443333 24578888999999999999999999988776433 24688889999999999999
Q ss_pred HHHHHHhHHcCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----cchhHHHHH
Q 002790 222 LELFKRMELEGLEPNFV--TWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLA----ADHMGKVIH 295 (881)
Q Consensus 222 ~~l~~~m~~~g~~pd~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~ 295 (881)
...|.+.... .||.+ .+--+...|.+.|+++.+...|+...+.. +-+..|..++-..|+..+ ..+.+..++
T Consensus 327 ~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 327 FKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 9999887755 56654 35567889999999999999999988762 344556666666666553 334555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCH------HHHHHHHhhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcc
Q 002790 296 GFVIKGGFEDYVFVKNALICVYGKHGDV------KVAQNLFSEIE-EKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368 (881)
Q Consensus 296 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~------~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 368 (881)
....+.- +.|...|-.+..+|-...-+ ..|..++..-. .......|.+...+...|.+++|...|++....-
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 5544442 56677777777766554433 33443333322 3566788899999999999999999999887651
Q ss_pred ---CC--CCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhH-HHHHHHHHhhhchHHHHHHHHHHHHHcC
Q 002790 369 ---GG--SMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVT-ISGLLSVCAESAALNIGREIHGHVVRVS 442 (881)
Q Consensus 369 ---~~--~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~i~~~~~~~g 442 (881)
.. ....++..+--.+...+-..++.+.|.+.|..+.+. .|+-++ |..+.......+...+|...+..+....
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 10 001122223334556667778999999999999876 566544 3333323334467778888888877643
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHH------------cCChHHHHHHHHHHH
Q 002790 443 MNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK-----KDLITWNSMISGYGM------------NGLGENALATFEEMI 505 (881)
Q Consensus 443 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~------------~g~~~~A~~l~~~m~ 505 (881)
..++.+++-+.+.|.+..++..|.+-|..+.+ +|..+.-+|.+.|.+ .+..++|+++|.+.+
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 33555666667788888888888886665543 244444445554432 234678999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH
Q 002790 506 EAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM----PMEPNA 581 (881)
Q Consensus 506 ~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd~ 581 (881)
... +-|...-+.+.-.++..|++.+|..+|.+..+.. .-...+|-.+.++|..+|++-.|+++|+.. ..+.+.
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 764 4566677778888899999999999999998542 234567888999999999999999999876 334577
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc-------------------CCHHHHHHHHHHHH
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS-------------------GRWEDAAKVRISAK 642 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~eA~~~~~~m~ 642 (881)
.+...|..++...|.+.++.+....++...|.++..-+.++.+..+. +..++|.++|..|.
T Consensus 717 ~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999988776666655433 56778889999998
Q ss_pred hCCCc
Q 002790 643 TKGLK 647 (881)
Q Consensus 643 ~~g~~ 647 (881)
..+-+
T Consensus 797 ~~~d~ 801 (1018)
T KOG2002|consen 797 KNGDK 801 (1018)
T ss_pred hcCCC
Confidence 76644
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.4e-13 Score=162.61 Aligned_cols=419 Identities=11% Similarity=0.049 Sum_probs=293.2
Q ss_pred HHHhcCChHHHHHHHhhcCCCCee---hHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhH-HHHH--HHHHHhcCCh
Q 002790 180 MYAKMGQMSDSFKLFDKVRVKNYI---SWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVT-WTSL--LSSHARCGRL 253 (881)
Q Consensus 180 ~~~~~g~~~~A~~l~~~m~~~~~~---~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-y~~l--i~~~~~~g~~ 253 (881)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+... +..+ ...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 346788888888888887643332 13377777788888889988888887 343332 3333 4577788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEI 333 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m 333 (881)
++|+++|+++.+.. |.+..++..++..|...++.++|++.++++
T Consensus 119 d~Aiely~kaL~~d------------------------------------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 119 DQALALWQSSLKKD------------------------------------PTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHHHhhC------------------------------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 88888888887763 344555667777888888888888888888
Q ss_pred cC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc
Q 002790 334 EE--KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN 411 (881)
Q Consensus 334 ~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 411 (881)
.. |+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|+++.++-... +.+.
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~ 236 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE 236 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH
Confidence 76 443334333333333555556888888888855 445667778888888888888888776653211 1111
Q ss_pred hhH------HHHHHHHH-----hhhch---HHHHHHHHHHHHH-cCCCCch-h----HHHHHHHHHHhcCCHHHHHHHHH
Q 002790 412 SVT------ISGLLSVC-----AESAA---LNIGREIHGHVVR-VSMNKNI-L----VQNGLLNMYMKCGCLEEGHLVFE 471 (881)
Q Consensus 412 ~~t------~~~ll~~~-----~~~g~---~~~a~~i~~~~~~-~g~~~~~-~----~~~~Li~~y~~~g~~~~A~~~~~ 471 (881)
..- ....++.- ..... .+.+..-++.+.. .+-.|.. . ..--.+-++.+.|++.++++.|+
T Consensus 237 ~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 237 HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 100 01111100 01122 2334444444443 1222321 1 22233557788999999999999
Q ss_pred hcccC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 002790 472 QIEKK----DLITWNSMISGYGMNGLGENALATFEEMIEAG-----FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVRE 542 (881)
Q Consensus 472 ~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 542 (881)
.+... ...+-..+.++|...+++++|+.+|+++.... ..++......|..++...+++++|..+++.+.+.
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 99843 33456678899999999999999999997643 1223344678999999999999999999999852
Q ss_pred cC----------CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 543 FR----------IEPQ---MEHYACMVDLLGRAGLLQEASDIVKNM-P-MEPNAYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 543 ~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~l~~~m-~-~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
.. -.|+ ...+..++..+...|++.+|++.++++ . .+-|...+..+...+...|...+|++.++.+
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 0233 344566788899999999999999998 2 3346778889999999999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 608 FGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 608 ~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
....|.+..+...++.++...|+|++|..+.+.+.+.
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998887765
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=7.3e-14 Score=168.44 Aligned_cols=161 Identities=9% Similarity=0.021 Sum_probs=116.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCCH--
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKD-------LITWNSMISGYGMNGLGENALATFEEMIEAG-----------FKPDG-- 513 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~pd~-- 513 (881)
...|...|++++|+..|+++.+.+ ...+..+..++...|++++|.++++++.+.. -.|+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 445556666666666666553221 2234445556666777777777777776542 12332
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 002790 514 -VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLN 589 (881)
Q Consensus 514 -~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~ 589 (881)
..+..+...+...|++++|++.++++.. ..|+ ...+..+...+...|++++|++.+++. ...|+ ...+..+..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 2455667778889999999999999883 3554 778888999999999999999999987 55666 456667777
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 590 SCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 590 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
.+...+++++|+.+++++++..|+++.+
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7889999999999999999999999844
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5e-13 Score=137.24 Aligned_cols=410 Identities=10% Similarity=0.131 Sum_probs=271.8
Q ss_pred hhChhhHHHHHHHHHHhCCCCChHHHHHHHHHHH--cCCChhHH-HHHHhhCCC--------------------CCCCCH
Q 002790 41 CKTIHQLKQVHNQLIVTGANASAFLAARVLSIYA--RFGRLFDA-RNVFETAPF--------------------DCKSSS 97 (881)
Q Consensus 41 c~~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~--~~g~~~~A-~~~~~~~~~--------------------~~~~~~ 97 (881)
.+..++.--++++|.+.|++.++.+--.|.+.-+ ...++.-| .+.|-.|.. ..|...
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~ 207 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTD 207 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCc
Confidence 3556666778999999999988887777665433 22222211 112211111 013466
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHH
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNEL 177 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~L 177 (881)
.+|.+||+++|+--..++|.+++++-.....+.+..+||.+|.+-+-.. . +.+..+|....+.||..|+|++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c----HHHHHHHHHhhcCCchHhHHHH
Confidence 7888888888888888888888888887777888888888887755333 3 7788888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHH-H
Q 002790 178 IGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEE-T 256 (881)
Q Consensus 178 i~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~-A 256 (881)
+.+.++.|+++.|.+ .|.+++.+|++.|+.|...+|..+|..+++.+++.+ |
T Consensus 280 L~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 888888888888764 478899999999999999999999999999998754 4
Q ss_pred HHHHHHHHH----cCCCC----CHHHHHHHHHHHhccccchhHHHHHHHHHhcC----CCCc---HHHHHHHHHHHHhcC
Q 002790 257 MDLFDMMRK----RGIEV----GAEAIAVVLSVCADLAADHMGKVIHGFVIKGG----FEDY---VFVKNALICVYGKHG 321 (881)
Q Consensus 257 ~~l~~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~Li~~~~~~g 321 (881)
..++.++.. +.++| |...|...+..|.+..+.+.|.++++.+.... +.++ .+-|..+....|...
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 444444443 22333 44567888999999999999999998876532 2232 345667778888888
Q ss_pred CHHHHHHHHhhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHH
Q 002790 322 DVKVAQNLFSEIEE----KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEAL 397 (881)
Q Consensus 322 ~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 397 (881)
..+.-...++.|.- |+..+...++++..-.++++-.-+++..+...| ++++..+ -+
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g---------ht~r~~l-----------~e 472 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG---------HTFRSDL-----------RE 472 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh---------hhhhHHH-----------HH
Confidence 88888888888874 666777778888888888888888888887765 2332222 23
Q ss_pred HHHHHHHHCCCCCchh---HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 002790 398 DLFRKMQLAKVVANSV---TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE 474 (881)
Q Consensus 398 ~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 474 (881)
+++..|......|+.. -+.....-|+ ..-.+..+..-..+.+. .......+.+.-.+.+.|+.++|.++|..+.
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 3444444444344322 2222222111 11112222222233333 3345566667777888888888888888773
Q ss_pred c-CC----HHHHH---HHHHHHHHcCChHHHHHHHHHHHHcC
Q 002790 475 K-KD----LITWN---SMISGYGMNGLGENALATFEEMIEAG 508 (881)
Q Consensus 475 ~-~d----~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g 508 (881)
+ .| ....| -+++.-.+.+.+..|...++-|...+
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2 11 22334 33444455566677777777665543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=7.1e-13 Score=156.79 Aligned_cols=166 Identities=9% Similarity=0.080 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKK---------DLITWNSMISGYGMNGLGENALATFEEMIEAG----------- 508 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------- 508 (881)
+..++.++|...+++++|..++..+... +......|.-+|...+++++|..+++++.+.-
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 3344445555555555555555544221 12223445555555666666666666665421
Q ss_pred --CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H
Q 002790 509 --FKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-Y 582 (881)
Q Consensus 509 --~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~ 582 (881)
..||-. .+..++..+...|++.+|++.++++.. ..| |......+.+.+...|.+.+|++.++.. ...|+. .
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 123333 334456667889999999999999983 355 5788889999999999999999999776 445654 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
+.......+...+++++|..+.+.+.+..|+++.+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 66677777888999999999999999999999844
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3.7e-13 Score=138.13 Aligned_cols=446 Identities=13% Similarity=0.083 Sum_probs=299.8
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--ccCCcccccchHHHHHHHHHHhCCCCchhH
Q 002790 96 SSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACK--FMGSFRFRFSFGQIVHNHVLQMGFQGNVHI 173 (881)
Q Consensus 96 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~ 173 (881)
.+.+=|.|+. +...|+..++.-+|+.|...|++.+...-..|++..+ .+.++.-+- .+.|-.|...|-. +..+
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E---~~~Fv~~~~~~E~-S~~s 189 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE---WEEFVGMRNFGED-STSS 189 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh---HHHHhhccccccc-cccc
Confidence 4445666665 4567889999999999999998888777666766533 333333330 2333334443321 1222
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCCh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRL 253 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 253 (881)
.+.|.+.+ ++-+...++..+|..||.++|+.-..+.|.+++++-.....+.+..+||.+|.+-.-..
T Consensus 190 --------WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 190 --------WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred --------cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 24455544 55666667788999999999999999999999999988877999999999996654332
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchh----HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH-HHH
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHM----GKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKV-AQN 328 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~-A~~ 328 (881)
..+++.+|.+..+.||..|||++++..++.|+++. +.+++.+|++-|+.|...+|..+|..+++.++..+ |..
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 37899999999999999999999999999997664 55788999999999999999999999999887644 555
Q ss_pred HHhhccC------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCC---hhhHHHHHHHHHHCCCh
Q 002790 329 LFSEIEE------------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPN---VISWSAVIGAFASNGRG 393 (881)
Q Consensus 329 ~~~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~---~~~y~~li~~~~~~g~~ 393 (881)
++.++.. .|..-|...++.|....+.+-|.++-.-+..........|+ ..-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555432 24455677788888888888888876655543221112333 23466777888999999
Q ss_pred HHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 002790 394 EEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQI 473 (881)
Q Consensus 394 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m 473 (881)
+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...+.....-++..+++..
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------ 482 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------ 482 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------
Confidence 99999999999888889999999999999999999999999999988775544443333333333222
Q ss_pred ccCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhH
Q 002790 474 EKKDLITWNSMISGYGMN--GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH 551 (881)
Q Consensus 474 ~~~d~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~ 551 (881)
..|+...-..+-..+++. .-.+.....-.+|.+..+.|. ..+.+.-.+.+.|..++|.+++..+.++..--|....
T Consensus 483 ~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 483 LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 012211111111111111 111222223345555444443 4455555567888888888888877655444444444
Q ss_pred HH---HHHHHHHHcCCHHHHHHHHHhC
Q 002790 552 YA---CMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 552 ~~---~li~~~~~~g~~~eA~~l~~~m 575 (881)
.| -+++.-.+....-.|..+++-|
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44 3344444555555555555544
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=6.2e-11 Score=128.07 Aligned_cols=467 Identities=14% Similarity=0.097 Sum_probs=337.8
Q ss_pred HHHHhcCChHHHHHHHhhcC---CCCeehHHHHHHHHHhCCChhHHHHHHHH----hHHcCCCCCHhHHHHHHHHHHhcC
Q 002790 179 GMYAKMGQMSDSFKLFDKVR---VKNYISWNMMFSGFALNFDCDGALELFKR----MELEGLEPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 179 ~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~ty~~li~~~~~~g 251 (881)
.+|++...++.|.+++.+.. ..+...|-+-...--++|+.+...+++.+ +...|+..+...|-.=...|-+.|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 34455556666666665543 23555565555555566666666666554 344566666666666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002790 252 RLEETMDLFDMMRKRGIEV--GAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNL 329 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~ 329 (881)
..-.+..+......-|+.- -..|+..--..|.+.+.++-++.++....+- ++.+..+|...+.+--..|..+.-..+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666666666666655443 2345666667777777777777777777664 455666777766666667888888888
Q ss_pred HhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 330 FSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 330 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
|.+... +....|-.....+-..|+...|..++.+..+.. +.+...|-.-+..-..+.++++|..+|.+....
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-----pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-----PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-----CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 877764 345667777777778888888888888888765 346678888888888888888888888888754
Q ss_pred CCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHH
Q 002790 407 KVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNS 483 (881)
Q Consensus 407 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~ 483 (881)
.|+...|.--+..---.+..++|.+++++.++. ++.-...|..+...+-..++++.|.+.|..-.+. .+..|-.
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 566655555555555677888888888877764 2333456777777888888888888888776543 4567777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAG 563 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g 563 (881)
|...=-+.|...+|..+|++..-.+ +-|...|...|+.=.+.|..+.|..+..+..++ +..+...|..-|.+..+.+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcc
Confidence 7777777888889999998888764 446668888888888999999999888888754 3444667777777777777
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 564 LLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 564 ~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+-....+.+++.. .|+-+...+...+.....++.|...|++++...|++..+|..+-..+.+.|.-++-.+++.+...
T Consensus 802 rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 7777777777664 35556667777888899999999999999999999999999999999999999999999987766
Q ss_pred CCCccCCcceeEEEcCeE
Q 002790 644 KGLKKVAGQSWIEVKRKI 661 (881)
Q Consensus 644 ~g~~~~~~~s~~~~~~~~ 661 (881)
. .|.-|..|..+..++
T Consensus 880 ~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 880 A--EPTHGELWQAVSKDI 895 (913)
T ss_pred c--CCCCCcHHHHHhhhH
Confidence 4 345566776554433
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=1.2e-12 Score=145.57 Aligned_cols=257 Identities=12% Similarity=0.130 Sum_probs=180.5
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
..++..+...|+.|+..+|.++|..||..|+.+.|- .|.-|.- .-+-+...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 356777788999999999999999999999999998 8887765 34557788999999988888877765
Q ss_pred CCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHH----HhCCCCc--------------hhHHHHHHHHHHhcCChH
Q 002790 127 GVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVL----QMGFQGN--------------VHIVNELIGMYAKMGQMS 188 (881)
Q Consensus 127 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~----~~g~~~~--------------~~~~~~Li~~~~~~g~~~ 188 (881)
.|.+.||..|+.+|...||+.. ++.+++.+..+. ..|+-.. ..-....+....-.|-++
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6778899999999999998865 333344222221 2222110 011122333344557778
Q ss_pred HHHHHHhhcCCCCe-ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 189 DSFKLFDKVRVKNY-ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 189 ~A~~l~~~m~~~~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
.+.+++..++.-.- .+.-..++-+..... -..++.......--.|+..+|..++++-..+|+.+.|..++.+|++.|
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 88888877763110 011112333333222 222333322221115899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 002790 268 IEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGD 322 (881)
Q Consensus 268 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 322 (881)
++.+.+.|..++-+ .++......+..-|...|+.|+..|+...+-.+.++|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999988876 77888888899999999999999998877766666444
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=6.4e-13 Score=136.88 Aligned_cols=478 Identities=14% Similarity=0.088 Sum_probs=287.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHH-HHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHH
Q 002790 100 WNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPL-VIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELI 178 (881)
Q Consensus 100 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li 178 (881)
...|.+-|..+....+|+..|+-..+....||...... +-+.+.+.+.+.+|+++.+..+++.....-.....+.+.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 34455667777788899999998888877887655432 22345566777777444444444333222223344566666
Q ss_pred HHHHhcCChHHHHHHHhhcCC--CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHH--------HHHHHHHH
Q 002790 179 GMYAKMGQMSDSFKLFDKVRV--KNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTW--------TSLLSSHA 248 (881)
Q Consensus 179 ~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty--------~~li~~~~ 248 (881)
..+.+.|++++|...|+...+ ||..+--.|+-++-.-|+-++..+.|.+|...-..||..-| ..|+.--.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 677888999999999987653 56554444444555667888888888888754323322211 11221111
Q ss_pred hcCCh-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcC---CCCcHHHHHHHH
Q 002790 249 RCGRL-----------EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGG---FEDYVFVKNALI 314 (881)
Q Consensus 249 ~~g~~-----------~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g---~~~~~~~~~~Li 314 (881)
++..+ ++++-.--++..--+.|+-.. + ....++.+...- +..+.. -.-.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g---------~dwcle~lk~s~~~~la~dle--i~ka 426 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------G---------CDWCLESLKASQHAELAIDLE--INKA 426 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------c---------cHHHHHHHHHhhhhhhhhhhh--hhHH
Confidence 11111 111111111111111222110 0 001111111100 000000 0112
Q ss_pred HHHHhcCCHHHHHHHHhhccCCChhHHHHH----HHH-HHH-cCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHH
Q 002790 315 CVYGKHGDVKVAQNLFSEIEEKNIVSWNAL----ITS-YAE-AGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l----i~~-~~~-~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~ 388 (881)
.-|.+.|+++.|.++++-+.++|..+-.+. ... |.+ -.++.+|...-+...... .-+......--+...
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-----ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-----RYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-----ccCHHHhhcCCceee
Confidence 346677777777777777766544332221 111 122 223445554444433222 111111111112223
Q ss_pred HCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
.+|++++|.+.|++..... -......|| +.-.+-+.|++++|..
T Consensus 502 ~ngd~dka~~~ykeal~nd-----------------------------------asc~ealfn-iglt~e~~~~ldeald 545 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNND-----------------------------------ASCTEALFN-IGLTAEALGNLDEALD 545 (840)
T ss_pred ecCcHHHHHHHHHHHHcCc-----------------------------------hHHHHHHHH-hcccHHHhcCHHHHHH
Confidence 3556666666666655332 111222222 2234567788999999
Q ss_pred HHHhcc---cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 469 VFEQIE---KKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 469 ~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
.|-++. ..+....-.+...|-...++.+|++++.+.... ++.|......|...|-+.|+-..|.+.+-+--+ -+
T Consensus 546 ~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yf 622 (840)
T KOG2003|consen 546 CFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YF 622 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--cc
Confidence 887765 347777778888898899999999999877664 566677889999999999999999988765431 23
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 546 EPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSC-RMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
.-+.++...|..-|....-+++|+.+|++. -++|+..-|..++..| ++.|++..|..+|+.+....|.+......|..
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 446888888999999999999999999998 6789999999998885 67999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHH
Q 002790 624 IYAASGRWEDAAKVRI 639 (881)
Q Consensus 624 ~~~~~g~~~eA~~~~~ 639 (881)
.+...|.-+ +.++-+
T Consensus 703 i~~dlgl~d-~key~~ 717 (840)
T KOG2003|consen 703 IAGDLGLKD-AKEYAD 717 (840)
T ss_pred Hhccccchh-HHHHHH
Confidence 988887543 444433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=8.4e-10 Score=124.41 Aligned_cols=589 Identities=12% Similarity=0.059 Sum_probs=373.9
Q ss_pred hChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHH
Q 002790 42 KTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYV 121 (881)
Q Consensus 42 ~~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 121 (881)
++..++..+...+++.- +.+...|..|-..|-.+|+.+.+...+-....-.|.|...|..+-....+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666777777777655 45678899999999999999999998866555556788999999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCChHHHHHHHhhc
Q 002790 122 KMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIV----NELIGMYAKMGQMSDSFKLFDKV 197 (881)
Q Consensus 122 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~----~~Li~~~~~~g~~~~A~~l~~~m 197 (881)
+.++.. +++-..+---...|-+.|+...| ..-+.++.....+.|..-. ...+..|...++-+.|.+.++..
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~A----m~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRA----METFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHH----HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999874 44444444445668889999999 6666666555332332333 33445566667778888888766
Q ss_pred CC-----CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCC---------------------------CCHhHHHHHHH
Q 002790 198 RV-----KNYISWNMMFSGFALNFDCDGALELFKRMELEGLE---------------------------PNFVTWTSLLS 245 (881)
Q Consensus 198 ~~-----~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---------------------------pd~~ty~~li~ 245 (881)
.. -+...+|.++..+.+...++.|......+...... ++.... -++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 53 24457888899999999999999888887762111 222221 2333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 002790 246 SHARCGRLEETMDLFDMMRKRGI--EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDV 323 (881)
Q Consensus 246 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 323 (881)
++.+....+....+..-..+..+ .-+...|.-+..++...|....|..++..+.......+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44455555555555555666663 3345667888888889999999999999888877666788888899999999999
Q ss_pred HHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccC----CCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 324 KVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDG----GSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 324 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
++|...|+.... | +...--+|-..+.+.|+.++|.+.+..+..-+. .....|+...--.....+.+.|+.++=
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999988875 3 233444555677888999999988888653221 011123333334445667777777665
Q ss_pred HHHHHHHHHCC----------------------CCCchhHHHHHHHHHhhhchHHHHHHH------HHHHHHcCCCCch-
Q 002790 397 LDLFRKMQLAK----------------------VVANSVTISGLLSVCAESAALNIGREI------HGHVVRVSMNKNI- 447 (881)
Q Consensus 397 ~~l~~~m~~~g----------------------~~p~~~t~~~ll~~~~~~g~~~~a~~i------~~~~~~~g~~~~~- 447 (881)
..+-..|.... ..-...+...++.+-.+.++.....+- ..-....|+..+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 44444442211 111112222223333332221111111 1111112333222
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHH----HHHHHHHHHHHcCChHHHHHHHHHHHHc-CC--CCCHH
Q 002790 448 -LVQNGLLNMYMKCGCLEEGHLVFEQIEKK-----DLI----TWNSMISGYGMNGLGENALATFEEMIEA-GF--KPDGV 514 (881)
Q Consensus 448 -~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----d~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~pd~~ 514 (881)
..+.-++..+++.++.++|..+...+... +.. .-..++.+.+..+++..|...++.|... +. .|...
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34556677888888888888887776543 221 2344555666778888888888887754 11 11111
Q ss_pred -HHHHHHHHHH-----------------------------------ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-H
Q 002790 515 -AFVAVLSACS-----------------------------------HAGLVNEGRRIFDMMVREFRIEPQMEHYACMV-D 557 (881)
Q Consensus 515 -t~~~ll~a~~-----------------------------------~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li-~ 557 (881)
.|+..++... ..+.+..|.+.+-... ...|+...++.++ -
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHH
Confidence 2221111111 1255667777666555 4467744444332 2
Q ss_pred HHH----------HcCCHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc--------
Q 002790 558 LLG----------RAGLLQEASDIVKNM-PME-P--NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT-------- 615 (881)
Q Consensus 558 ~~~----------~~g~~~eA~~l~~~m-~~~-p--d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-------- 615 (881)
++. |.-..-.+..++++. ..+ + ...++-.+..+|...|=...|..+|+++++..|.+.
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~ 862 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNY 862 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcc
Confidence 221 111233445555443 111 2 345777899999999999999999999999866542
Q ss_pred ----chHHHHHHHHHHcCCHHHHHHHHHH
Q 002790 616 ----GSYMLLSNIYAASGRWEDAAKVRIS 640 (881)
Q Consensus 616 ----~~~~~l~~~~~~~g~~~eA~~~~~~ 640 (881)
.+-..|.-+|.+.|+...|.+++++
T Consensus 863 dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 863 DLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2344678889999999999998764
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=4.9e-09 Score=113.68 Aligned_cols=509 Identities=12% Similarity=0.059 Sum_probs=387.7
Q ss_pred HHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHH
Q 002790 83 RNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHV 162 (881)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m 162 (881)
.+++....+..|.++..|...+. ..+.+.|.-++.+..+. ++.+ .-|.-++++...++.| +.+++..
T Consensus 366 ~RVlRKALe~iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s----~dLwlAlarLetYenA----kkvLNka 432 (913)
T KOG0495|consen 366 KRVLRKALEHIPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQS----MDLWLALARLETYENA----KKVLNKA 432 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccch----HHHHHHHHHHHHHHHH----HHHHHHH
Confidence 34454444445567888876654 45667788888888775 2222 3455677778888888 9999988
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcC----C----CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCC
Q 002790 163 LQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR----V----KNYISWNMMFSGFALNFDCDGALELFKRMELEGLE 234 (881)
Q Consensus 163 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~----~----~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 234 (881)
.+. ++.+..+|.+-...--.+|+.+...+++++-. . -+...|-.=...|-..|..--+..+......-|+.
T Consensus 433 Re~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 433 REI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred Hhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc
Confidence 775 77788888877777778899999888887532 1 13345666666677777777777788777776654
Q ss_pred CC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHH
Q 002790 235 PN--FVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNA 312 (881)
Q Consensus 235 pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 312 (881)
-. ..||..-...|.+.+.++-|..+|....+- .+-+...|......-...|..+....++...+.. .+.....|-.
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM 589 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLM 589 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHH
Confidence 32 347888899999999999999999887764 2334455666666666777888888888877765 3455566777
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH
Q 002790 313 LICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS 389 (881)
Q Consensus 313 Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~ 389 (881)
...-+-..|++..|+.++...-+ .+...|-..+..-..+..+++|..+|.+.... .|+...|.--+..---
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~------sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI------SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc------CCcchhhHHHhHHHHH
Confidence 77777888999999999988865 35578999999999999999999999998873 5677777777777777
Q ss_pred CCChHHHHHHHHHHHHCCCCCch-hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 390 NGRGEEALDLFRKMQLAKVVANS-VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
.+..++|.+++++..+. -|+- ..|..+-+.+-+.++++.|...|..-.+. ++..+..|-.|.+.--+.|.+-.|+.
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 88999999999988865 5554 45666667777888888888877654432 34567788888888899999999999
Q ss_pred HHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 469 VFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 469 ~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
++++..- | |...|-..|+.-.+.|..+.|..+..+.++. ++.+...|..-|...-+.++-......++ .+
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kc 813 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KC 813 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hc
Confidence 9998763 3 7789999999999999999999999888875 45556677777777666666444443333 35
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 546 EPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
.-|++..-.+...+-...++++|.+.|.+. ...|| ..+|.-+...+.++|.-+.-.+++.+...-+|.....|.....
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 667888888899999999999999999987 55665 4589999999999999999999999999999987776665543
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=3.7e-10 Score=126.26 Aligned_cols=128 Identities=12% Similarity=-0.062 Sum_probs=94.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHH
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPM-----EPNAYVWGTLLNSC 591 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~-----~pd~~~~~~Ll~~~ 591 (881)
+.++-.|++.-+..++...-+... ..- - ...|..||+.+....+.++|..+..+... .-|..-+..+.+..
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye-~~l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYE-DLL-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 334444554444444444333332 111 1 27899999999999999999999998832 24566778888899
Q ss_pred HHcCCHHHHHHHHHHHhhc---CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 002790 592 RMHKNTDVAEAMASQIFGL---ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKK 648 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~ 648 (881)
.+.+....+..+.+++.+. .|....++..+.+.....|+.+.-.++.+-+..-|+..
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9999999999999988765 34345677788888899999999999999888888765
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.9e-08 Score=105.39 Aligned_cols=510 Identities=10% Similarity=0.080 Sum_probs=305.5
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhH
Q 002790 94 KSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHI 173 (881)
Q Consensus 94 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~ 173 (881)
.-+...|-.-..--...+++..|.++|++.+... ..+...|.--+..=-+...+..| +.+++..+..=...| ..
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhA----RNv~dRAvt~lPRVd-ql 143 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHA----RNVWDRAVTILPRVD-QL 143 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHH----HHHHHHHHHhcchHH-HH
Confidence 3456666666666666778888888888887654 22333344344444455666666 778877766522222 24
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcC--CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcC
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVR--VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g 251 (881)
|--.+.+=-..|++..|.++|++.. +|+...|++.|..=.+.+..+.|..++++..-. .|++.+|-.-.+.=.+.|
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcC
Confidence 4455555567799999999998765 689999999999999999999999999998755 699999988888888999
Q ss_pred ChHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHH
Q 002790 252 RLEETMDLFDMMRKR-GI-EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDY--VFVKNALICVYGKHGDVKVAQ 327 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~ 327 (881)
+...+..+|+...+. |- ..+...|.+....=.+...++.+..++...++. +|.+ ...|..+...=-+-|+.....
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 999999999877654 11 011111222222222334445555555554443 1221 223333333333333322222
Q ss_pred HHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 002790 328 NLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAK 407 (881)
Q Consensus 328 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (881)
...-.= -.--++.+.+.+ +-|-.+|-..+..-...|+.+...++|++....
T Consensus 301 d~Iv~K-----------------------Rk~qYE~~v~~n-----p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 301 DAIVGK-----------------------RKFQYEKEVSKN-----PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred HHHhhh-----------------------hhhHHHHHHHhC-----CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 111000 000122222222 345555555555555666666666666666543
Q ss_pred CCCch-------hHHHHHHHHH---hhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHH----HhcCCHHHHHHHHHhc
Q 002790 408 VVANS-------VTISGLLSVC---AESAALNIGREIHGHVVRVSMNKNILVQNGLLNMY----MKCGCLEEGHLVFEQI 473 (881)
Q Consensus 408 ~~p~~-------~t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~~~g~~~~A~~~~~~m 473 (881)
++|-. ..|.-+=-+| ....+.+.+.++++..++ -++...+++..+=-+| .++.++..|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33321 1111111111 234667777777777776 2344445555543333 4667788888887776
Q ss_pred cc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhH
Q 002790 474 EK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH 551 (881)
Q Consensus 474 ~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~ 551 (881)
.. |-..++..-|..=.+.+++|.+..++++.++-+ +-|..+|......=...|+.+.|..+|.-+.....+......
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 53 345566666666677788888888888888864 445567777766667788888888888888754333334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHhhc----
Q 002790 552 YACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCR-----MHK-----------NTDVAEAMASQIFGL---- 610 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~-----~~g-----------~~~~A~~~~~~~~~~---- 610 (881)
|.+.|+.=...|.++.|..++++. ...+...+|.++..--. +.+ +...|..+|+++...
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 788888888888888888888877 33445557777665432 233 567788888887654
Q ss_pred CCCCc--chHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 611 ITETT--GSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 611 ~p~~~--~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.|... ......-+.-...|...+...+-.+|.+
T Consensus 590 ~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 590 TPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 22211 1222333333445666666555555543
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=9.8e-10 Score=113.76 Aligned_cols=442 Identities=14% Similarity=0.111 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHH-HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHH-
Q 002790 64 FLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLW-NSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIR- 140 (881)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 140 (881)
.+...|.+-|.......+|+..++-+.+ +.-||.-.. -.+...+.+..++.+|++.|+.....-...+..+-.-+++
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3444566777777788899999987765 445554433 3355678888999999999987776533333333333333
Q ss_pred ---HHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC----------------CC
Q 002790 141 ---ACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV----------------KN 201 (881)
Q Consensus 141 ---a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~----------------~~ 201 (881)
.+.+.|.++.| ..-+++..+. .|+..+.-.|+-++.-.|+-++..+.|.+|.. |+
T Consensus 282 igvtfiq~gqy~da----insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDA----INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred cCeeEEecccchhh----HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 35688999999 7778877765 57776655666666667999999999988741 11
Q ss_pred eehHHH-----HHHHHHhCCC--hhHHHHHHHHhHHcCCCCCHhH-HHH--------------------HHHHHHhcCCh
Q 002790 202 YISWNM-----MFSGFALNFD--CDGALELFKRMELEGLEPNFVT-WTS--------------------LLSSHARCGRL 253 (881)
Q Consensus 202 ~~~y~~-----li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t-y~~--------------------li~~~~~~g~~ 253 (881)
....|. .+.-+-+.+. .+++.-.--++...-+.||-.. |.- -..-|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 122222 2222222221 1222222222222222332111 000 11234567777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHH-----HHHHHhcCCHHHH
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAV--VLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNAL-----ICVYGKHGDVKVA 326 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-----i~~~~~~g~~~~A 326 (881)
+.|+++++-+.++.-+.-...-+. .+...-...++..|.+.-+..+.. .-||.- .+.-...|++++|
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHH
Confidence 777777776665543222222111 112222223444444444433221 112211 1112234666666
Q ss_pred HHHHhhccCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHH
Q 002790 327 QNLFSEIEEKNIVSWNALIT---SYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKM 403 (881)
Q Consensus 327 ~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m 403 (881)
.+.+++....|...-.++.+ .+-..|++++|++.|-++...- ..+......+.+.|-...++.+|.+++.+.
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-----~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-----LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 66666666554433333222 2445566666666665554321 334444555555566666666666665444
Q ss_pred HHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--ccCCHHHH
Q 002790 404 QLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQI--EKKDLITW 481 (881)
Q Consensus 404 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m--~~~d~~~~ 481 (881)
... ++-|+...+.|...|-+.|+-.+|.+.+-.--+. ++.++.+...|...|....-+++|+..|++. .+|+..-|
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 321 2223444445555555555555555544332221 2344445555555555555555555555443 24444444
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 002790 482 NSMISGYGM-NGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH 525 (881)
Q Consensus 482 ~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (881)
..||..|.+ .|++.+|+++|+...+. ++-|..+..-|++.|..
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 444443332 34444444444444432 23333333334433333
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=3.3e-13 Score=143.52 Aligned_cols=257 Identities=16% Similarity=0.137 Sum_probs=111.9
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHH-HHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 002790 382 AVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLL-SVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKC 460 (881)
Q Consensus 382 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 460 (881)
.+...+.+.|++++|++++++.......|+...|..++ ..+-..++.+.|.+.++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777888888888886544433235444444433 3445577788888888888765433 55566667766 688
Q ss_pred CCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 002790 461 GCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAG-FKPDGVAFVAVLSACSHAGLVNEGRRIFD 537 (881)
Q Consensus 461 g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~A~~l~~ 537 (881)
+++++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999888877643 366677888888889999999999999987543 34566678888888999999999999999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002790 538 MMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITET 614 (881)
Q Consensus 538 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 614 (881)
+..+ ..|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|.|
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9983 4675 7788889999999999999888877661 23455678899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 615 TGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+.....+++++.+.|+.++|.++++++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999886543
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.8e-09 Score=110.60 Aligned_cols=284 Identities=13% Similarity=0.106 Sum_probs=214.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCC--CCchhHHHHHHHHHh
Q 002790 346 TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV--VANSVTISGLLSVCA 423 (881)
Q Consensus 346 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~ 423 (881)
.++-...+.+++..-.......|. +.+...-+....+.....++++|+.+|+++.++.. --|..+|+.++-.-.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf----~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGF----PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 445555566777777777776662 22222222333445566788999999999887631 125567777765544
Q ss_pred hhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHH
Q 002790 424 ESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALAT 500 (881)
Q Consensus 424 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l 500 (881)
...++.--.+....+ -+-.+.|...+.+.|.-.++.++|...|++..+- ....|+.|..-|....+...|++-
T Consensus 311 ~~skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhHHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 333322211111111 1234566777889999999999999999998754 457899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--CC
Q 002790 501 FEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM--PM 577 (881)
Q Consensus 501 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m--~~ 577 (881)
++..++-. +-|...|..|.++|.-.+...-|+-+|++.. .++|+ ...|.+|.++|.+.++.++|++.|++. ..
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999874 6677899999999999999999999999998 67775 899999999999999999999999988 33
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 578 EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL-------ITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 578 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
+.+...+..|...+.+.++.++|.+.+++-++. .|....+...|+.-+.+.+++++|..+....
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 345689999999999999999999999988763 3444445556888899999999998876644
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=1.1e-09 Score=121.98 Aligned_cols=276 Identities=12% Similarity=0.059 Sum_probs=132.2
Q ss_pred cCCHHHHHHHHhhccCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHH--HHHHHHHHCCChH
Q 002790 320 HGDVKVAQNLFSEIEEK--NI-VSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWS--AVIGAFASNGRGE 394 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~--~li~~~~~~g~~~ 394 (881)
.|+++.|++.+....+. +. ..|........+.|+.+.|...+.++.+. .|+...+. .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL------ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHHCCCHH
Confidence 46666666655554431 11 12222233335566666666666666552 33332222 2244556666666
Q ss_pred HHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhcCCHHHHH
Q 002790 395 EALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNIL-------VQNGLLNMYMKCGCLEEGH 467 (881)
Q Consensus 395 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~-------~~~~Li~~y~~~g~~~~A~ 467 (881)
+|...++++.+.. +-+...+..+...+...|+++.+.+++..+.+.+..++.. ++..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666665543 2233344445555555555555555555555544332111 1122222222333344445
Q ss_pred HHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 468 LVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 468 ~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
++++.+.+ .++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...++
T Consensus 250 ~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 250 RWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--
Confidence 55554432 24555555566666666666666666665553 333311 1222233445566666666555532
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 545 IEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
.|+ +..+.++...+.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333 334445555555555555555555544 3345544444444455555555555555554443
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=2e-09 Score=120.69 Aligned_cols=279 Identities=12% Similarity=0.045 Sum_probs=162.5
Q ss_pred hcCCHHHHHHHHhhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChh--hHHHHHHHHHHCCCh
Q 002790 319 KHGDVKVAQNLFSEIEE--KN-IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVI--SWSAVIGAFASNGRG 393 (881)
Q Consensus 319 ~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~--~y~~li~~~~~~g~~ 393 (881)
..|+++.|++.+.+..+ |+ ...+-.....+.+.|+.+.|.+.+.+..+. .|+.. ..-.....+.+.|++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~------~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL------AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCcCchHHHHHHHHHHHHCCCH
Confidence 45677777777666544 22 222333345566667777777777766552 23322 223345666667777
Q ss_pred HHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHH-------HHHHHHHhcCCHHHH
Q 002790 394 EEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQN-------GLLNMYMKCGCLEEG 466 (881)
Q Consensus 394 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~-------~Li~~y~~~g~~~~A 466 (881)
++|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+...... .++..-......+..
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777776653 2233455566666667777777777777776665432222111 111111122223444
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHH
Q 002790 467 HLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAF---VAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 467 ~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
.+.++..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 455555543 36777777888888888888888888888875 3444321 111112233466777777777776
Q ss_pred HhcCCCCC-h--hHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 541 REFRIEPQ-M--EHYACMVDLLGRAGLLQEASDIVKN--M-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 541 ~~~~~~p~-~--~~~~~li~~~~~~g~~~eA~~l~~~--m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
+. .|+ + ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 k~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred Hh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 343 2 4555677777777777777777773 2 4556666666666667777777777777776544
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=1e-09 Score=122.29 Aligned_cols=251 Identities=14% Similarity=0.088 Sum_probs=182.7
Q ss_pred HHHHHhcCCHHHHHHHHhhccC--CChhHHH--HHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH
Q 002790 314 ICVYGKHGDVKVAQNLFSEIEE--KNIVSWN--ALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS 389 (881)
Q Consensus 314 i~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~ 389 (881)
.....+.|+++.|...+.++.+ |+..... .....+...|++++|...++++.+.. +.+...+..+...|.+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-----P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-----PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Confidence 3444677888888888887765 3332222 23556777888888888888887755 4456677788888888
Q ss_pred CCChHHHHHHHHHHHHCCCCCch-------hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 002790 390 NGRGEEALDLFRKMQLAKVVANS-------VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGC 462 (881)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 462 (881)
.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++.+-+. .+.++.....+...+...|+
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 88888888888888877654322 12333333333344445555555554332 34577888889999999999
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002790 463 LEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVR 541 (881)
Q Consensus 463 ~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~ 541 (881)
.++|.+++++..+.....--.++.+....++.+++++..++..+. .|+. ..+..+...|.+.+++++|.+.|+.+.
T Consensus 279 ~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al- 355 (398)
T PRK10747 279 HDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL- 355 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 999999998876543222223344555668999999999999876 4554 467788889999999999999999998
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 542 EFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 542 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
...|+...+..+...+.+.|+.++|.+++++.
T Consensus 356 --~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 356 --KQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred --hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56899999999999999999999999999865
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.3e-09 Score=112.78 Aligned_cols=213 Identities=15% Similarity=0.147 Sum_probs=168.8
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATF 501 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 501 (881)
.|+...+.+-++..++....++. .|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777788888888876544433 255566788999999999999988764 26677877777777788899999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 002790 502 EEMIEAGFKPD-GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP 579 (881)
Q Consensus 502 ~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p 579 (881)
++.++. .|. ...|..+.-+..+.++++++...|++..++ ++.-++.|+.....+..++++++|.+.|+.. ..+|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999885 444 447777777777899999999999999865 3334789999999999999999999999876 4444
Q ss_pred C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 580 N---------AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 580 d---------~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+ +.+-..++-.- -.+++..|+.+++++++++|.....|..|+..-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 22333333332 348999999999999999999999999999999999999999999997543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.2e-10 Score=125.35 Aligned_cols=277 Identities=13% Similarity=0.047 Sum_probs=214.1
Q ss_pred ChHHHHHHHHHHHHccCCCCCCCCh-hhHHHHHHHHHHCCChHHHHHHHHHHHHCC--CCCchhHHHHHHHHHhhhchHH
Q 002790 353 LCDEAVEVFSQLEKLDGGSMERPNV-ISWSAVIGAFASNGRGEEALDLFRKMQLAK--VVANSVTISGLLSVCAESAALN 429 (881)
Q Consensus 353 ~~~~A~~l~~~m~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~ 429 (881)
+..+|...|.++..+ .+|. .....+..+|...+++++|.++|+...+.. ..-+..+|++.|--+-+.-
T Consensus 334 ~~~~A~~~~~klp~h------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v--- 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV--- 404 (638)
T ss_pred HHHHHHHHHHhhHHh------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---
Confidence 467788888885543 2333 444556688888899999999998887652 1224567777765443321
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 430 IGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKD---LITWNSMISGYGMNGLGENALATFEEMIE 506 (881)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 506 (881)
+..++.+-+-.--+-.+.+|.++.++|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.
T Consensus 405 -~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 405 -ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred -HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 12222222222224568999999999999999999999999987654 46788888888889999999999998875
Q ss_pred cCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHH
Q 002790 507 AGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAY 582 (881)
Q Consensus 507 ~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~ 582 (881)
. .|... .|..+...|.+.++++.|.-.|+++. .+.|. .+....+...+.+.|+.|+|+.++++. ..+| |+.
T Consensus 484 ~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 V--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred C--CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 3 44433 67778888999999999999999998 67886 677788889999999999999999998 3343 444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.--.-+..+...+++++|.+.++++.+..|++..+|..++..|.+.|+.+.|+.-|.-|.+-
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 44455666778899999999999999999999999999999999999999999988877664
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=8.4e-08 Score=100.67 Aligned_cols=445 Identities=13% Similarity=0.102 Sum_probs=287.4
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHH
Q 002790 145 MGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV---KNYISWNMMFSGFALNFDCDGA 221 (881)
Q Consensus 145 ~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~A 221 (881)
.+++..| +.+++..+... ..+...|-..+.+=.++..+..|..+++.... +--..|.-.+..=-..|++..|
T Consensus 86 q~e~~RA----RSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRA----RSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHH----HHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 3445555 67777666544 34555666667777777777777777775432 1223455555555566777777
Q ss_pred HHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhc
Q 002790 222 LELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKG 301 (881)
Q Consensus 222 ~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 301 (881)
.++|++-.+- .|+...|.+.|+.=.+-+..+.|..+|++..--
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~----------------------------------- 203 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV----------------------------------- 203 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-----------------------------------
Confidence 7777776544 677777777777777777777777777776532
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCC
Q 002790 302 GFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERP 375 (881)
Q Consensus 302 g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p 375 (881)
.|++..|-.....=.++|.+..|..+|+...+ .+...+.++...=..+..++.|..+|+-..+.-. ...
T Consensus 204 --HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p---k~r 278 (677)
T KOG1915|consen 204 --HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP---KGR 278 (677)
T ss_pred --cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ccc
Confidence 35555555556666666666666666666543 1223344444444456667777777776666431 011
Q ss_pred ChhhHHHHHHHHHHCCChHHHHHH--------HHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCch
Q 002790 376 NVISWSAVIGAFASNGRGEEALDL--------FRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNI 447 (881)
Q Consensus 376 ~~~~y~~li~~~~~~g~~~~A~~l--------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~ 447 (881)
....|......=-+-|+.....+. |+.+.+.+ +-|-.++--.++.-...|+.+...++++.++..-.+.+.
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e 357 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE 357 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH
Confidence 133444444444445554433332 33444432 456667777777777889999999999998875332221
Q ss_pred -hHHHHHH----HH----HHhcCCHHHHHHHHHhccc---CCHHHHHHH----HHHHHHcCChHHHHHHHHHHHHcCCCC
Q 002790 448 -LVQNGLL----NM----YMKCGCLEEGHLVFEQIEK---KDLITWNSM----ISGYGMNGLGENALATFEEMIEAGFKP 511 (881)
Q Consensus 448 -~~~~~Li----~~----y~~~g~~~~A~~~~~~m~~---~d~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p 511 (881)
..+.-.| +. =....+.+.+.++|+...+ ....|+.-+ ..--.++.+...|.+++...+ |..|
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cP 435 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCC
Confidence 1122111 11 1255778888888877654 233344333 333446778889999888766 6689
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----HHHHHH
Q 002790 512 DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMPMEPN----AYVWGT 586 (881)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd----~~~~~~ 586 (881)
...+|...|..=.+.+.+|....++++.. ...|. ..+|......=...|+.+.|..+|+-.-.+|. ...|.+
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 99999999998889999999999999988 45664 67888888888889999999999987754443 457777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHh
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA-----ASG-----------RWEDAAKVRISAKT 643 (881)
Q Consensus 587 Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~eA~~~~~~m~~ 643 (881)
.|..-...|.++.|..+|+++++..+... ++...+.--. +.| ....|..+|+++..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 77777888999999999999988766544 5555554433 334 56677777776543
No 46
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=3.8e-06 Score=91.77 Aligned_cols=540 Identities=13% Similarity=0.154 Sum_probs=302.4
Q ss_pred CCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCcchHH
Q 002790 58 GANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL-GVLGDGFTFP 136 (881)
Q Consensus 58 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~ 136 (881)
+..|+...|-.+=+.+ +.+..+...|++ .|-.-+..+.++|+...-...|...+.. .+.-....|.
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmpR-------Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~ 142 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMPR-------IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWD 142 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCCH-------HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchH
Confidence 4556666666555443 456666666754 7778888888999999988888886543 3344556788
Q ss_pred HHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCC----------CeehHH
Q 002790 137 LVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVK----------NYISWN 206 (881)
Q Consensus 137 ~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----------~~~~y~ 206 (881)
..+.-....+-++.+ ..+++..++. ++..-+..|..+++.+++++|-+.+..+... +...|.
T Consensus 143 lyl~Fv~~~~lPets----~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 143 LYLKFVESHGLPETS----IRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred HHHHHHHhCCChHHH----HHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 888877777777677 7777776553 4445778888899999999999998877532 334577
Q ss_pred HHHHHHHhCCCh---hHHHHHHHHhHHcCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 207 MMFSGFALNFDC---DGALELFKRMELEGLEPNFV--TWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSV 281 (881)
Q Consensus 207 ~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 281 (881)
.+-...+++-+. -....+++.+... -+|.. .|.+|.+.|++.|.+++|.++|++..+.- .+..-|+.+.++
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHH
Confidence 666666554332 2344555555533 56654 58999999999999999999998877652 344456666666
Q ss_pred HhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC---------------CChhHHHHHHH
Q 002790 282 CADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE---------------KNIVSWNALIT 346 (881)
Q Consensus 282 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---------------~~~~~~~~li~ 346 (881)
|+.-.....+..+--.-.+.+-+.+.. +++-.+.-|+.+.+ .++..|..-+.
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 654322221111110000111111111 11112222222211 12333333222
Q ss_pred HHHHcCChHHHHHHHHHHHHccCCCCCCC-ChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHH---
Q 002790 347 SYAEAGLCDEAVEVFSQLEKLDGGSMERP-NVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVC--- 422 (881)
Q Consensus 347 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--- 422 (881)
+..|+..+-...+.+..+.--.....- -...|..+.+.|-..|+.+.|..+|++..+.. -.+..-|-..+
T Consensus 358 --l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 358 --LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAW 431 (835)
T ss_pred --hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHH
Confidence 223445555555555544321000000 11235555555666666666666666554322 11111222222
Q ss_pred ----hhhchHHHHHHHHHHHHHc-----------CCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHH
Q 002790 423 ----AESAALNIGREIHGHVVRV-----------SMNK------NILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITW 481 (881)
Q Consensus 423 ----~~~g~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~ 481 (881)
.+..+++.|.++.+..... +.++ +..+|..+++.--..|-++....+++++.+--+.|-
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 2233444455444443321 1111 234445556666667777777778877765322222
Q ss_pred HHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCCCCh--hHH
Q 002790 482 NSMI---SGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSH---AGLVNEGRRIFDMMVREFRIEPQM--EHY 552 (881)
Q Consensus 482 ~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~---~g~~~~A~~l~~~m~~~~~~~p~~--~~~ 552 (881)
..++ .-+-.+.-++++.+.+++-+..=-.|+.. .|+..+.-+.+ .-.++.|..+|++.. + ++.|.. ..|
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-D-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-h-cCCHHHHHHHH
Confidence 2211 12233455777777777665542345543 55555554432 235888888888888 3 666552 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc--chHHHHHHHHH
Q 002790 553 ACMVDLLGRAGLLQEASDIVKNMPM--EPN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT--GSYMLLSNIYA 626 (881)
Q Consensus 553 ~~li~~~~~~g~~~eA~~l~~~m~~--~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~ 626 (881)
-.....=-+.|....|+.++++... ++. ...||..|.-....=-...-..+|+++++..|++. ....-.+++-.
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET 669 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh
Confidence 3333444466888888888888732 222 23667666554433334455678888888877653 23445677778
Q ss_pred HcCCHHHHHHHHHHHHh
Q 002790 627 ASGRWEDAAKVRISAKT 643 (881)
Q Consensus 627 ~~g~~~eA~~~~~~m~~ 643 (881)
+.|..+.|..++.--.+
T Consensus 670 klGEidRARaIya~~sq 686 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hhhhHHHHHHHHHhhhh
Confidence 88999999888874443
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.1e-08 Score=107.21 Aligned_cols=325 Identities=13% Similarity=0.076 Sum_probs=233.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh--hhH
Q 002790 303 FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV--ISW 380 (881)
Q Consensus 303 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~--~~y 380 (881)
...|.+.+-...-.+-+.|....|+..|......-+..|.+-+....-..+.+.+. ...... +.|. ..=
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~~l-----~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVVGL-----PSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHhcC-----cccchHHHH
Confidence 34455555555556677889999999998877643334443333222222222221 111111 1111 111
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHH
Q 002790 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM--NKNILVQNGLLNMYM 458 (881)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~ 458 (881)
-.+..++-.....+++..-.+.....|+.-+...-+....+.-...++++|..+|+++.+... -.|..+|+.++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 123456666667888888888888887665555545455555678899999999999998732 12556776654 33
Q ss_pred hcCC--HH-HHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 002790 459 KCGC--LE-EGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRI 535 (881)
Q Consensus 459 ~~g~--~~-~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l 535 (881)
+..+ +. -|..+++ +.+--+.|..++.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+-
T Consensus 309 ~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 3332 22 2333322 223355677777788888899999999999999864 23345778888889999999999999
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 536 FDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 536 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
++.+. .+.| |-..|-.|..+|.-.+++.-|+-+|++. ..+| |...|.+|..+|.+.++.++|+..|.++.....
T Consensus 387 YRrAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 387 YRRAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99998 5666 5789999999999999999999999998 5555 678999999999999999999999999999877
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 613 ETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+...|..|++.|.+.++.++|...+++-.+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7889999999999999999999999987765
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.28 E-value=5.2e-09 Score=117.29 Aligned_cols=257 Identities=14% Similarity=0.016 Sum_probs=179.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhccC--CCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHH
Q 002790 311 NALICVYGKHGDVKVAQNLFSEIEE--KNI--VSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGA 386 (881)
Q Consensus 311 ~~Li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~ 386 (881)
-.....+.+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-----P~~~~~l~ll~~~ 196 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-----PRHKEVLKLAEEA 196 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 3445666777888888888887643 333 233334677788889999999998888865 4455678888889
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHH---hhhchHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhc
Q 002790 387 FASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVC---AESAALNIGREIHGHVVRVSM---NKNILVQNGLLNMYMKC 460 (881)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~~~ 460 (881)
+.+.|++++|.+.+..+.+.++.+.......-..+. ...+..+.+.+.+..+.+... +.++..+..+...+...
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~ 276 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDC 276 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHC
Confidence 999999999999999998886543322211111111 222223333334444444322 24788888999999999
Q ss_pred CCHHHHHHHHHhcccC--CHHH-HHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHH
Q 002790 461 GCLEEGHLVFEQIEKK--DLIT-WNSMISGY--GMNGLGENALATFEEMIEAGFKPDGV---AFVAVLSACSHAGLVNEG 532 (881)
Q Consensus 461 g~~~~A~~~~~~m~~~--d~~~-~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~A 532 (881)
|+.++|.+++++..+. |... ...++..+ ...++.+.+.+.+++..+. .|+.. ...++...|.+.|++++|
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHH
Confidence 9999999999998753 3221 00133333 3357788899999888875 45544 556888899999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 533 RRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
.+.|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 355 ~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 355 ADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999533 2256899988999999999999999999999874
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.9e-08 Score=106.71 Aligned_cols=262 Identities=12% Similarity=0.029 Sum_probs=206.6
Q ss_pred ChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 002790 376 NVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLN 455 (881)
Q Consensus 376 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (881)
+......-.+-+...+++.+.+++++...+.. +++...+..-|..+...|+...-..+=..+++. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444555567778889999999998887653 555555555666677777766666555555554 3556778888888
Q ss_pred HHHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 002790 456 MYMKCGCLEEGHLVFEQIEKKD---LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEG 532 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A 532 (881)
.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888899999999999876543 468999999999999999999998877663 122222233444568889999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 002790 533 RRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP--------MEP-NAYVWGTLLNSCRMHKNTDVAEA 602 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~--------~~p-d~~~~~~Ll~~~~~~g~~~~A~~ 602 (881)
.++|.+.. ++.|+ +..++-+.-.....+.+.+|..+|+... .++ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999988 77885 7778888888888999999999998762 112 34578889999999999999999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 603 MASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+++++.+.|.+..+|..++-+|...|+++.|++.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997654
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.23 E-value=7.1e-11 Score=125.58 Aligned_cols=255 Identities=18% Similarity=0.179 Sum_probs=74.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 002790 244 LSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVL-SVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGD 322 (881)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 322 (881)
...+.+.|++++|++++++.......|+...|..++ ..+-..++.+.+...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444555555555555554333322122222222211 1222233333333333333332211 23344445444 46666
Q ss_pred HHHHHHHHhhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHH
Q 002790 323 VKVAQNLFSEIEE--KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLF 400 (881)
Q Consensus 323 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~ 400 (881)
+++|.+++...-+ ++...+..++..+.+.++++++.++++.+..... .+++...|..+...+.+.|++++|++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA---APDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T------T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666655432 3444555556666666666666666666554221 2344555666666666666666666666
Q ss_pred HHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCC
Q 002790 401 RKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE---KKD 477 (881)
Q Consensus 401 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~d 477 (881)
++..+. .|+ |..+.+.++..+...|+.+++.++++... ..|
T Consensus 170 ~~al~~--~P~----------------------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 170 RKALEL--DPD----------------------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHHHH---TT-----------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHHHc--CCC----------------------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 666554 332 33344445555555555555444444432 234
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
...|..+..+|...|+.++|+..|++..... +.|......+..++...|+.++|.++.++..
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 4556666666666677777777777766642 3355566666667777777777776666544
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=2.5e-09 Score=109.91 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=165.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA 522 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 522 (881)
....+..+...|...|++++|...+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3566777888999999999999999987542 56788888999999999999999999998864 4455678888889
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVA 600 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A 600 (881)
+...|++++|.+.+++..+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999843222223567788899999999999999999887 3334 456788888889999999999
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 601 EAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998888888899999999999999999999887755
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1.9e-09 Score=118.17 Aligned_cols=246 Identities=14% Similarity=0.136 Sum_probs=161.5
Q ss_pred ChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHH-HHHH
Q 002790 392 RGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM--NKNILVQNGLLNMYMKCGCLE-EGHL 468 (881)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~-~A~~ 468 (881)
+..+|+..|...... +.-+......+..+|...+++++++++|+.+.+... --+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 367788888874333 233334556666778888888888888888876421 224555655543222111111 1222
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC
Q 002790 469 VFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKP-DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP 547 (881)
Q Consensus 469 ~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p 547 (881)
+.+. ....+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+-+..-+.....+|.|...|+..+ ++.|
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 2222 2235678888888888888888888888887764 45 45577777667777777888888887766 4444
Q ss_pred Ch-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 548 QM-EHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 548 ~~-~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
+. ..|.-+.-.|.+.++++.|+-.|++. .+.|.. +....+...+.+.|+.|+|+++++++..++|.|+-.-+..+..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 31 23334566677888888888888777 555644 3444555557778888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 002790 625 YAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 625 ~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...+++++|+..++++++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh
Confidence 88888888888888877764
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=5.4e-08 Score=100.87 Aligned_cols=280 Identities=13% Similarity=0.091 Sum_probs=165.8
Q ss_pred cCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 320 HGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
.|++.+|+++..+-.+ ..+..|..-..+--+.|+.+.+-.++.+..+... .++...+-+........|+.+.|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----DDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----CchHHHHHHHHHHHHhCCCchhH
Confidence 4555555555555433 1223333334444555555555555555555321 33444444555555555555555
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHH
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNI-------LVQNGLLNMYMKCGCLEEGHLV 469 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~-------~~~~~Li~~y~~~g~~~~A~~~ 469 (881)
..-..++.+.+ +-+........++|.+.|++.....+...+.+.|.-.+. .+++.+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 55555555443 223334444555555555555555555555555543332 3445555555555555555556
Q ss_pred HHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 002790 470 FEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIE 546 (881)
Q Consensus 470 ~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~ 546 (881)
++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ....-.+.+-++...-++..++..+.++..
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 666653 2566667777778888888888888888887766666 222334566777777777777766554444
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 547 PQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 547 p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
| ..+.+|...|.+.+.+.+|.+.|+.. +.+|+..+|+-+..++.+.|+.++|.+..++....
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4 56667777777777777777777755 56677777777777777777777777777766543
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=4.9e-06 Score=90.93 Aligned_cols=305 Identities=9% Similarity=0.063 Sum_probs=150.9
Q ss_pred HHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC------C
Q 002790 55 IVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLG------V 128 (881)
Q Consensus 55 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g------~ 128 (881)
....+.....+|...+......|-++-+.++++.... -++..-+.-|..+++.++.++|-+.+....... -
T Consensus 130 raLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~g 206 (835)
T KOG2047|consen 130 RALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKG 206 (835)
T ss_pred HhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcc
Confidence 3334445555666666666666777777777776554 444456667777777777777777776664321 1
Q ss_pred CCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhcCCC--Ceeh
Q 002790 129 LGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGN--VHIVNELIGMYAKMGQMSDSFKLFDKVRVK--NYIS 204 (881)
Q Consensus 129 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--~~~~ 204 (881)
+.+...|..+-...++..+.-.... +..+.+.+... -+| ...|+.|..-|.+.|.++.|..+|++-... .+.-
T Consensus 207 kSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrD 283 (835)
T KOG2047|consen 207 KSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRD 283 (835)
T ss_pred cchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhh
Confidence 2233345555555554443332211 02222222221 123 346777788888888888888887754321 1112
Q ss_pred HHHHHHHHHh----------------CC------ChhHHHHHHHHhHHcCC-----------CCCHhHHHHHHHHHHhcC
Q 002790 205 WNMMFSGFAL----------------NF------DCDGALELFKRMELEGL-----------EPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 205 y~~li~~~~~----------------~g------~~~~A~~l~~~m~~~g~-----------~pd~~ty~~li~~~~~~g 251 (881)
++.+-..|++ .| +++-.+.-|+.+...+. +.++.+|..-. -+..|
T Consensus 284 Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~ 361 (835)
T KOG2047|consen 284 FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEG 361 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcC
Confidence 2222222221 11 11223333333332210 11222333222 22345
Q ss_pred ChHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHhccccchhHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCC
Q 002790 252 RLEETMDLFDMMRKRGIEVG-----A-EAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDY---VFVKNALICVYGKHGD 322 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~g~~p~-----~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~~~~~g~ 322 (881)
+..+-...|.+..+. +.|. . ..|..+.+.|-..|+++.|+.+++...+-.++.- ..+|.....+=.+..+
T Consensus 362 ~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred ChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 555666666665543 2221 1 1244445555666666666666666655443322 3444445555555566
Q ss_pred HHHHHHHHhhccC---------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcc
Q 002790 323 VKVAQNLFSEIEE---------------------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368 (881)
Q Consensus 323 ~~~A~~~~~~m~~---------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 368 (881)
++.|++++++... ++...|...++.--..|-++....+++++.+..
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 6666666655431 112234444444444555555555566555544
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=2.9e-08 Score=110.23 Aligned_cols=231 Identities=18% Similarity=0.194 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHCCChHHHHHHHHHHHHC-----C-CCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHH
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQLA-----K-VVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQN 451 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (881)
.+...+...|...|++++|..+++...+. | ..|... ...+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va----------------------------------~~l~ 245 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA----------------------------------SMLN 245 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH----------------------------------HHHH
Confidence 34444777777788888887777766543 1 011111 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCC-CCHH
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEK-------K----DLITWNSMISGYGMNGLGENALATFEEMIE-----AGFK-PDGV 514 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~ 514 (881)
.+...|...+++++|..+|+++.. + -..+++.|...|.+.|++++|...+++..+ .|.. |...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 345566666666666666665531 1 224566666777777777777666665543 1222 2222
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CC--C
Q 002790 515 -AFVAVLSACSHAGLVNEGRRIFDMMVREFR--IEPQ----MEHYACMVDLLGRAGLLQEASDIVKNM-------PM--E 578 (881)
Q Consensus 515 -t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~l~~~m-------~~--~ 578 (881)
-++.+...|+..+++++|..+++...+.+. ..++ ..+++.|...|...|++++|.+++++. .. .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 466677778889999999998887765432 2222 468999999999999999999999876 11 2
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 579 PN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGL-------ITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 579 pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
+. ...++.|...|.+.+++++|.++|.+...+ .|....+|..|+.+|.+.|++++|.++.....
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 447788888999999999999999987654 34445678899999999999999999988775
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=5.9e-08 Score=97.49 Aligned_cols=288 Identities=17% Similarity=0.152 Sum_probs=177.9
Q ss_pred CChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHH
Q 002790 216 FDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIH 295 (881)
Q Consensus 216 g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 295 (881)
.++++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+.+-+.+.++ ||. |
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T--------------------- 102 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-T--------------------- 102 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-c---------------------
Confidence 45666666666666431 222223344556666666666666666555543 110 0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCC
Q 002790 296 GFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKN---IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSM 372 (881)
Q Consensus 296 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 372 (881)
..........|..-|...|-+|.|+.+|..+.+.+ ......++..|-+..+|++|++.-+++.+.+....
T Consensus 103 -------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 103 -------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred -------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 01112344567788999999999999999998733 34567789999999999999999999988775211
Q ss_pred CCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHH-HHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHH
Q 002790 373 ERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTIS-GLLSVCAESAALNIGREIHGHVVRVSMNKNILVQN 451 (881)
Q Consensus 373 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (881)
..-=...|.-+...+....+.+.|..++.+..+. .|+.+--+ .+-+.....|+++.|.+.++.+.+.+...-..+..
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 1111235666777777788899999999988766 34433333 33345566777777777777777776666666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA--- 526 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--- 526 (881)
.|..+|...|+.++....+..+.+. +...-..+-..-....-.+.|..++.+-+.. +|+...+..++..-...
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccc
Confidence 7777777777777777766666432 3333333333333333345555555555444 67777777766654322
Q ss_pred CCHHHHHHHHHHHH
Q 002790 527 GLVNEGRRIFDMMV 540 (881)
Q Consensus 527 g~~~~A~~l~~~m~ 540 (881)
|...+....+++|.
T Consensus 332 g~~k~sL~~lr~mv 345 (389)
T COG2956 332 GRAKESLDLLRDMV 345 (389)
T ss_pred cchhhhHHHHHHHH
Confidence 33444445555554
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.5e-08 Score=104.08 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 71 SIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
+-|-++|++++|++++.+....+|..+..|.....+|...|+++++.+--.+.++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 44667788888888888777644333777778888888888888877766665553
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=2e-06 Score=96.11 Aligned_cols=428 Identities=14% Similarity=0.085 Sum_probs=234.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCC
Q 002790 158 VHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV---KNYISWNMMFSGFALNFDCDGALELFKRMELEGLE 234 (881)
Q Consensus 158 ~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 234 (881)
.+.++....+..|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|....|..++++-....-.
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 334444445667888999999999999999999999997653 34467999999999999999999999876644323
Q ss_pred CCHhHHHHHH-HHH-HhcCChHHHHHHHHHHHHc--C----CCCCHHHHHHHHHHHhc----cc-------cchhHHHHH
Q 002790 235 PNFVTWTSLL-SSH-ARCGRLEETMDLFDMMRKR--G----IEVGAEAIAVVLSVCAD----LA-------ADHMGKVIH 295 (881)
Q Consensus 235 pd~~ty~~li-~~~-~~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~~~~~----~~-------~~~~a~~i~ 295 (881)
|+..+--.++ ..| -+.+..+++++.-.+.... + +.|- .|..+--+|.. .. ...++.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 5444432233 333 3456677777776666552 1 2222 22222222211 00 112233333
Q ss_pred HHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCC
Q 002790 296 GFVIKGG-FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGG 370 (881)
Q Consensus 296 ~~~~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 370 (881)
+...+.+ -.|++..|- .--|+..++++.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+...+.-+
T Consensus 468 e~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~- 544 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG- 544 (799)
T ss_pred HHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-
Confidence 3333322 222222222 2234444555555555444432 3444555555555555555555555554443221
Q ss_pred CCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHH
Q 002790 371 SMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQ 450 (881)
Q Consensus 371 ~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 450 (881)
.|......-+..-...++.++++.....+..- |+. .+.
T Consensus 545 ----~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~----------------------------we~------~~~---- 582 (799)
T KOG4162|consen 545 ----DNHVLMDGKIHIELTFNDREEALDTCIHKLAL----------------------------WEA------EYG---- 582 (799)
T ss_pred ----hhhhhchhhhhhhhhcccHHHHHHHHHHHHHH----------------------------HHh------hhh----
Confidence 11111111112222234444444444433211 000 000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc----cC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CC------HHHH
Q 002790 451 NGLLNMYMKCGCLEEGHLVFEQIE----KK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFK--PD------GVAF 516 (881)
Q Consensus 451 ~~Li~~y~~~g~~~~A~~~~~~m~----~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd------~~t~ 516 (881)
.-..++-....+....+. ++ .+.++..+..-....+ ..+..-.. |...-+. |+ ...|
T Consensus 583 ------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 583 ------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred ------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHH
Confidence 000000111111221111 00 1112222111111110 00000000 1111111 12 1234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRM 593 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~ 593 (881)
......+.+.+..++|...+.+.. ++.|- ...|......+...|.++||.+.|... .+.|+ +.+..++...+.+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 455556777788888887777766 44554 567777778888889999998888776 56665 4588888888999
Q ss_pred cCCHHHHHH--HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 594 HKNTDVAEA--MASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 594 ~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.|+...|.. +...+.+.+|.++..|..++.++.+.|+.++|.+.|+...+-
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 998888888 999999999999999999999999999999999999987754
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=2.4e-07 Score=96.23 Aligned_cols=252 Identities=14% Similarity=0.133 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHH
Q 002790 312 ALICVYGKHGDVKVAQNLFSEIEEK----NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAF 387 (881)
Q Consensus 312 ~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~ 387 (881)
.-..+-...|+.+.+-..+.+.-++ +....-+........|+.+.|..-++++.+.. +.+.........+|
T Consensus 123 ~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-----pr~~~vlrLa~r~y 197 (400)
T COG3071 123 LAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-----PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-----cCChHHHHHHHHHH
Confidence 3344445556666666666665542 23344455556666777777777777766654 45556667777777
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCch-------hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 002790 388 ASNGRGEEALDLFRKMQLAKVVANS-------VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKC 460 (881)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 460 (881)
.+.|++...+.++..|.+.|.--+. .+|..+++-+...+..+.-...++..-+ ..+.++....+++.-+..+
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHc
Confidence 7777777777777777777654443 4566777767666666665556655433 2344667777888899999
Q ss_pred CCHHHHHHHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 002790 461 GCLEEGHLVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 461 g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
|+.++|.++..+..++ |.. -...-.+.+-++...-++..++-... .+-++-.+.+|..-|.+.+.+.+|...|+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred CChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998887654 443 11222344566777777776665543 233446788889999999999999999998
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 539 MVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 539 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
.. ...|+..+|+.+.+.+.+.|+..+|.++.++.
T Consensus 354 Al---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 354 AL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 87 56899999999999999999999999998875
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.3e-07 Score=96.70 Aligned_cols=280 Identities=15% Similarity=0.028 Sum_probs=182.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH
Q 002790 304 EDYVFVKNALICVYGKHGDVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW 380 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y 380 (881)
..+..+...-.+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++.+.. +....+|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-----P~~a~sW 315 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-----PSKALSW 315 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-----CCCCcch
Confidence 444555555556666667777777777666652 33445555566666666666666666666643 3445677
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHH
Q 002790 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVAN-SVTISGLLSVCAESAALNIGREIHGHVVRVSMNK-NILVQNGLLNMYM 458 (881)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~ 458 (881)
-++.--|...|+..+|.+.|.+.... .|. ...|..+..+++-.+..++|...+..+.+.=... -+..|. .--|.
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl--gmey~ 391 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL--GMEYM 391 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH--HHHHH
Confidence 77776666667777777777665432 222 2345566666666777777776666665521111 122222 22466
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CC-CCHHHHHHHHHHHHccCCH
Q 002790 459 KCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEA----G-FK-PDGVAFVAVLSACSHAGLV 529 (881)
Q Consensus 459 ~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-pd~~t~~~ll~a~~~~g~~ 529 (881)
+.++.+.|.+.|.+... .|+...+-+....-..+.+.+|..+|+..+.. + -+ -...+++.|..+|.+.+.+
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 77777788877777643 26667777666666677788888888776621 1 01 1345788888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMH 594 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~ 594 (881)
++|+..+++... -...+..++.++.-.|...|+++.|.+.|.+. .++||..+-..+++.+...
T Consensus 472 ~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 472 EEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999988872 22335788888888899999999999999877 7788887777777766544
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.3e-06 Score=90.55 Aligned_cols=393 Identities=10% Similarity=0.047 Sum_probs=220.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHH-HHhCCC-hhHHHHHHHHh-HHcCCCCCHhHHHHHHHHH
Q 002790 171 VHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSG-FALNFD-CDGALELFKRM-ELEGLEPNFVTWTSLLSSH 247 (881)
Q Consensus 171 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~-~~~~g~-~~~A~~l~~~m-~~~g~~pd~~ty~~li~~~ 247 (881)
...-...+..|...++-+.|...+.+.++.-...-+.|+.+ +-+.|. -.++.--+.+. ++. | ... ..|.+.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p--~aL-~~i~~l 170 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC---P--MAL-QVIEAL 170 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc---c--hHH-HHHHHH
Confidence 33445566778888899999999888876544444444433 333322 11111111111 111 0 000 001111
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cccchhHHHHHHHHH-hcCCCCcHHHHHHHHHHHHhcCCHH
Q 002790 248 ARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCAD--LAADHMGKVIHGFVI-KGGFEDYVFVKNALICVYGKHGDVK 324 (881)
Q Consensus 248 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~-~~g~~~~~~~~~~Li~~~~~~g~~~ 324 (881)
.+.+ ...+...=..|....+.|...+.+.-+.+++. .++...+.+.+-.+. ..-++.|+.....+.+.+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 00000000112222333443344434433332 222222333222222 2335666667777777777777777
Q ss_pred HHHHHHhhccCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHH
Q 002790 325 VAQNLFSEIEEKNIVSWN---ALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFR 401 (881)
Q Consensus 325 ~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~ 401 (881)
+|...|++...-|..+.. ...-.+.+.|+.++...+...+.... ..+...|-.-...+...++++.|+.+-+
T Consensus 250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-----~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-----KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-----hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 777777665543322211 11222344555555555555544422 1222233333333344444555554444
Q ss_pred HHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CH
Q 002790 402 KMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DL 478 (881)
Q Consensus 402 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~ 478 (881)
+..+. .|+ ++..+-.-...+...|+.++|.-.|..... | +.
T Consensus 325 K~I~~--~~r----------------------------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 325 KCIDS--EPR----------------------------------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred HHhcc--Ccc----------------------------------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence 44322 111 222222223456677888888888876653 3 77
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcc-CCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVL-SACSHA-GLVNEGRRIFDMMVREFRIEPQ-MEHYACM 555 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~-g~~~~A~~l~~~m~~~~~~~p~-~~~~~~l 555 (881)
.+|.-|+..|...|++.+|.-+-+..... ++-+..+...+. ..|.-. ..-++|..++++.. .+.|+ ....+.+
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLI 444 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHH
Confidence 88888899888888888888777665543 233444544442 233322 23678999998877 67888 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 556 VDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
...+...|...+++.++++. ...||....+.|...+...+.+.+|...|..++.++|.+.
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999999999887 6779999999999999999999999999999999999874
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.07 E-value=3.4e-10 Score=84.81 Aligned_cols=49 Identities=31% Similarity=0.626 Sum_probs=29.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 002790 235 PNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCA 283 (881)
Q Consensus 235 pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 283 (881)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5555666666666666666666666666666666666555555555554
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.4e-06 Score=94.48 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=119.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHc
Q 002790 451 NGLLNMYMKCGCLEEGHLVFEQIEKKD-LITWNSMISGYGM--NGLGENALATFEEMIEAGFKPDG--VAFVAVLSACSH 525 (881)
Q Consensus 451 ~~Li~~y~~~g~~~~A~~~~~~m~~~d-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 525 (881)
+.++.+|. +..+.++++-....... ...+.+++....+ ......|.+++...-+. .|.. +.....+.-...
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 34444443 45566677666665432 3445555544433 23467788888877765 4444 355555666778
Q ss_pred cCCHHHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 002790 526 AGLVNEGRRIFD--------MMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--------PMEPNA-YVWGTLL 588 (881)
Q Consensus 526 ~g~~~~A~~l~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--------~~~pd~-~~~~~Ll 588 (881)
.|+++.|.+++. .+. +.+.. +.+...++..+.+.++.+-|..++.+. ..++.. ..|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999988 444 22333 456667888888888766666555543 222222 2333444
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 589 NSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
..-.++|+-++|..+++++.+.+|++......++.+|++. +.+.|..+-+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 4456789999999999999999999999999999999877 4666666544
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.06 E-value=3.8e-10 Score=84.57 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=44.4
Q ss_pred CChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhh
Q 002790 375 PNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAE 424 (881)
Q Consensus 375 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 424 (881)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999888874
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=3.1e-06 Score=85.95 Aligned_cols=435 Identities=11% Similarity=0.034 Sum_probs=247.1
Q ss_pred HHhcCChHHHHHHHhhcCCCC---eehHHHH-HHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 002790 181 YAKMGQMSDSFKLFDKVRVKN---YISWNMM-FSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEET 256 (881)
Q Consensus 181 ~~~~g~~~~A~~l~~~m~~~~---~~~y~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A 256 (881)
+....++..|..+++--...+ ..+-+.. ..++-..|++++|+..+.-+.... .|+...+..|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 344567777777776433211 1122333 345567899999999998877644 66677777777777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC-
Q 002790 257 MDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE- 335 (881)
Q Consensus 257 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~- 335 (881)
..+-.... -++-.-..+++...+.++.+....+++.+.+.- .-.-+|....--.-.+++|.+++.++..
T Consensus 111 ~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87765432 233444455566677888888887777765432 2223344444444568899999998875
Q ss_pred -CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh
Q 002790 336 -KNIVSWNAL-ITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV 413 (881)
Q Consensus 336 -~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 413 (881)
|+-...|.- .-+|.+..-++-+.++++-..+.. +.+..+-|.......+.=.-..|.+-.+.+...+-..
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-----pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-----PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-----CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 444445543 346778888888888888777644 3344556655555555433344444444444332111
Q ss_pred HHHHHHHHHhhh-----chHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHH
Q 002790 414 TISGLLSVCAES-----AALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGY 488 (881)
Q Consensus 414 t~~~ll~~~~~~-----g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~ 488 (881)
| ..+.-.++. ..-+.|.+++--+.+. -+..--.|+-.|.+.+++.+|..+.+++...++.-|-.-.-.+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVF 326 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 0 011111111 2233444444333321 1223334666788888888888888877655444333222223
Q ss_pred HHcC-------ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 002790 489 GMNG-------LGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLG 560 (881)
Q Consensus 489 ~~~g-------~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~ 560 (881)
+..| ...-|.+.|+-.-+++..-|.+ --.++.+++.-..++++.+.++..+. .+ +..|...--.+..+++
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sY-F~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SY-FTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HH-hcCcchhhhHHHHHHH
Confidence 3333 2344555554444444333322 22334444445556777777777775 32 2223233334677788
Q ss_pred HcCCHHHHHHHHHhCCC-C-CCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhc-CCCCc-chHHHHHHHHHHcCCHHHHH
Q 002790 561 RAGLLQEASDIVKNMPM-E-PNAYVWGTLLN-SCRMHKNTDVAEAMASQIFGL-ITETT-GSYMLLSNIYAASGRWEDAA 635 (881)
Q Consensus 561 ~~g~~~eA~~l~~~m~~-~-pd~~~~~~Ll~-~~~~~g~~~~A~~~~~~~~~~-~p~~~-~~~~~l~~~~~~~g~~~eA~ 635 (881)
..|.+.+|+++|-+... + .|..+|.+++. +|.+.+..+.|..++ ++. .|.+. .....+++-|.+++.+=-|.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876621 1 34556655544 456667776665443 333 23222 23445667777888887777
Q ss_pred HHHHHHHhCC
Q 002790 636 KVRISAKTKG 645 (881)
Q Consensus 636 ~~~~~m~~~g 645 (881)
+.|+.+....
T Consensus 482 KAFd~lE~lD 491 (557)
T KOG3785|consen 482 KAFDELEILD 491 (557)
T ss_pred HhhhHHHccC
Confidence 7777776544
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=2.9e-07 Score=92.65 Aligned_cols=283 Identities=14% Similarity=0.148 Sum_probs=148.8
Q ss_pred cCCHHHHHHHHhhccCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh------hhHHHHHHHHHHC
Q 002790 320 HGDVKVAQNLFSEIEEKNIVSW---NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV------ISWSAVIGAFASN 390 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~------~~y~~li~~~~~~ 390 (881)
+.+.++|.++|-+|.+.|..|+ -++.+.|-+.|..+.|+++-..+.+ .||. ...-.|..-|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-------spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-------SPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHHHHHh
Confidence 4566777777777766444433 3456666777777777777666665 3332 1223344556666
Q ss_pred CChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002790 391 GRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVF 470 (881)
Q Consensus 391 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~ 470 (881)
|-++.|..+|..+.+.+. - -......|+..|-+..+|++|+++-
T Consensus 121 Gl~DRAE~~f~~L~de~e-f-----------------------------------a~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-F-----------------------------------AEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred hhhhHHHHHHHHHhcchh-h-----------------------------------hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666666654331 1 1222333445555555555555554
Q ss_pred HhcccCCHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002790 471 EQIEKKDLI--------TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVR 541 (881)
Q Consensus 471 ~~m~~~d~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~ 541 (881)
+++.+.+.. .|.-+...+....+.+.|..++++..+.+ |+.+ .-..+.+.....|+++.|.+.++...+
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 444322111 23333344444455666666666666542 2222 223344455566666666666666652
Q ss_pred hcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchH
Q 002790 542 EFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSY 618 (881)
Q Consensus 542 ~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 618 (881)
. .|+ ..+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.|.....+-+...|.-. .+
T Consensus 243 Q---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf 318 (389)
T COG2956 243 Q---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GF 318 (389)
T ss_pred h---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HH
Confidence 2 333 455556666666666666666666554 3333333333343333333344555555555555455433 33
Q ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHhCCCccCCc
Q 002790 619 MLLSNIYA---ASGRWEDAAKVRISAKTKGLKKVAG 651 (881)
Q Consensus 619 ~~l~~~~~---~~g~~~eA~~~~~~m~~~g~~~~~~ 651 (881)
..|++... ..|++.+.+..++.|....++..|.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 33333332 2356788888888888766666554
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=0.0002 Score=82.20 Aligned_cols=143 Identities=16% Similarity=0.269 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
...|..+..+-.+.|...+|++-|-+ .-|...|..++..+.+.|.+++-.+++...+++ .-.|.+. ..|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 45788888888888888888877654 246678999999999999999999999888754 4555544 57889
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHH
Q 002790 558 LLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 637 (881)
+|++.+++.|-++++. -||..-...+.+-|...+.++.|.-+|.. ...|..|+..+...|.+..|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888774 46778888888999999999999988875 35677788888888888888765
Q ss_pred HHHH
Q 002790 638 RISA 641 (881)
Q Consensus 638 ~~~m 641 (881)
-+++
T Consensus 1243 aRKA 1246 (1666)
T KOG0985|consen 1243 ARKA 1246 (1666)
T ss_pred hhhc
Confidence 4433
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.98 E-value=4.3e-05 Score=84.21 Aligned_cols=452 Identities=14% Similarity=0.136 Sum_probs=216.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHH
Q 002790 100 WNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIG 179 (881)
Q Consensus 100 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~ 179 (881)
|-.++..| ..+.+...++..+...+ +.+-...|.....-.+...|+.++| -...+..++. -.-+.+.|..+.-
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea----~~~vr~glr~-d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEA----YELVRLGLRN-DLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHH----HHHHHHHhcc-CcccchhHHHHHH
Confidence 33344433 45566666776666665 3333444554444445556666666 4433333332 1223445666655
Q ss_pred HHHhcCChHHHHHHHhhcC---CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCC-HhHHHHHHHHHHhcCChHH
Q 002790 180 MYAKMGQMSDSFKLFDKVR---VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPN-FVTWTSLLSSHARCGRLEE 255 (881)
Q Consensus 180 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~ 255 (881)
.+-...++++|.+.|.... +.|...|.-+.-.-++.|+++.....-.+..+. .|. ...|..+..++.-.|++..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555677888888887543 345556665555556677777777766666654 343 3457777777778888888
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 002790 256 TMDLFDMMRKRGI-EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIE 334 (881)
Q Consensus 256 A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 334 (881)
|..++++..+... .|+...|.-.....- -.....+.|.+++|.+.+....
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhh
Confidence 8888888776542 445444422221110 0112234455555555554443
Q ss_pred CC--C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHH-HHHHCCChHHHH-HHHHHHHHCC--
Q 002790 335 EK--N-IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIG-AFASNGRGEEAL-DLFRKMQLAK-- 407 (881)
Q Consensus 335 ~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~-~~~~~g~~~~A~-~l~~~m~~~g-- 407 (881)
.. | ...-......+.+.++.++|..++..+... .||...|..... ++.+-.+.-+++ .+|....+.-
T Consensus 213 ~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 21 1 111222334455556666666666666553 344444443332 222222222232 4444433221
Q ss_pred -CCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcc--------
Q 002790 408 -VVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLE---E-GHLVFEQIE-------- 474 (881)
Q Consensus 408 -~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~---~-A~~~~~~m~-------- 474 (881)
-.|-... ++......-.+...+++....+.|+++- +..+...|-.....+ + +..+...+.
T Consensus 287 ~e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 287 HECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred cccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 0111111 1111112222233344444444554332 222222221111111 0 111111110
Q ss_pred ------cCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 475 ------KKDLITWN--SMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 475 ------~~d~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
.|....|. -++..|-..|+++.|.++++..+.. .|+.+ -|..=.+.+.+.|++++|..++++.. ++
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~---el 434 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ---EL 434 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hc
Confidence 12233333 3455566667777777777766654 55544 34444456667777777777777665 22
Q ss_pred C-CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 002790 546 E-PQMEHYACMVDLLGRAGLLQEASDIVKNMPMEP-N--------AYVWGTLLNS--CRMHKNTDVAEAMASQI 607 (881)
Q Consensus 546 ~-p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~p-d--------~~~~~~Ll~~--~~~~g~~~~A~~~~~~~ 607 (881)
. ||..+-.--+.-..++.+.++|.++.......- + ...|-.+-.+ |.+.|++.+|.+=+..+
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 2 233222244455566777777776665541110 1 1134333333 55666666665555444
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=3.2e-06 Score=94.60 Aligned_cols=206 Identities=13% Similarity=0.030 Sum_probs=120.5
Q ss_pred hCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-cchH
Q 002790 57 TGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGD-GFTF 135 (881)
Q Consensus 57 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 135 (881)
..++=++.+|-.|.-++.++|+++.+.+.|++...........|+.+-..|...|....|+.+++.-....-.|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344557889999999999999999999999987765556677899999999999999999999987654432343 3344
Q ss_pred HHHHHHHH-ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-----------ChHHHHHHHhhcCC---C
Q 002790 136 PLVIRACK-FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMG-----------QMSDSFKLFDKVRV---K 200 (881)
Q Consensus 136 ~~ll~a~~-~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g-----------~~~~A~~l~~~m~~---~ 200 (881)
-..-+.|. +.+..+++++++.++.+......-......|-.+--+|...- ...++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444455 456778887776777664322211233444444444443221 11223333333321 1
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 002790 201 NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDM 262 (881)
Q Consensus 201 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 262 (881)
|..+--.+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22111122223444455555555555555443344445555555555555555555555544
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=98.96 E-value=3.3e-07 Score=106.86 Aligned_cols=210 Identities=15% Similarity=0.030 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002790 428 LNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEM 504 (881)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m 504 (881)
.++|...++.+++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444455555444432 22455666677777888888888888888753 3 5667888888899999999999999999
Q ss_pred HHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 002790 505 IEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA 581 (881)
Q Consensus 505 ~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~ 581 (881)
.+. .|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..+..+|...|++++|...++++ +..|+.
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 886 44432 3334445566788999999999988733 2354 556778888899999999999999887 444554
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 582 Y-VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 582 ~-~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
. .++.+...+...| +.|...++.+.+..-..+..+..+...|.-.|+-+.+..+ +++.+.|
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4 4445555566666 4788877777665333232333367777778888877766 7777654
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=1.2e-05 Score=88.68 Aligned_cols=438 Identities=14% Similarity=0.138 Sum_probs=229.6
Q ss_pred cCCChhHHHHHHhhCCCCCCCC-HhHHHHHHHHHHcCCChhHHHHHHHHHHh------------------CCCCCCcchH
Q 002790 75 RFGRLFDARNVFETAPFDCKSS-SLLWNSILRVNVSNGLYENALKLYVKMRK------------------LGVLGDGFTF 135 (881)
Q Consensus 75 ~~g~~~~A~~~~~~~~~~~~~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~------------------~g~~p~~~t~ 135 (881)
..|+++.|..+++.... .|+ ...|-.+.......|+..-|.+.|..+-+ ..+.-+...|
T Consensus 456 d~~df~ra~afles~~~--~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEM--GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred ccCchHHHHHHHHhhcc--CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 34789999998887654 244 34577777777777776666555543211 0011111111
Q ss_pred HHHHHHHH-ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCe-ehHHHHHHHHH
Q 002790 136 PLVIRACK-FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNY-ISWNMMFSGFA 213 (881)
Q Consensus 136 ~~ll~a~~-~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~~y~~li~~~~ 213 (881)
..+=..++ -.+++..| +.+|-+- -.-..-|.+|....+|++|..+-+....|.. ..-.+.++++.
T Consensus 534 ykvra~lail~kkfk~a----e~ifleq---------n~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~ 600 (1636)
T KOG3616|consen 534 YKVRAMLAILEKKFKEA----EMIFLEQ---------NATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALM 600 (1636)
T ss_pred HHHHHHHHHHHhhhhHH----HHHHHhc---------ccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 11111111 11122222 3332110 0112345566666667766666554444322 12233344455
Q ss_pred hCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHH
Q 002790 214 LNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKV 293 (881)
Q Consensus 214 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 293 (881)
..|+-++|-++-+ .|-.+ -+.|+.|.+.|.+.+|...... ...+..|......+..++.+..
T Consensus 601 dt~qd~ka~elk~--------sdgd~-laaiqlyika~~p~~a~~~a~n--~~~l~~de~il~~ia~alik~e------- 662 (1636)
T KOG3616|consen 601 DTGQDEKAAELKE--------SDGDG-LAAIQLYIKAGKPAKAARAALN--DEELLADEEILEHIAAALIKGE------- 662 (1636)
T ss_pred hcCchhhhhhhcc--------ccCcc-HHHHHHHHHcCCchHHHHhhcC--HHHhhccHHHHHHHHHHHHhhH-------
Confidence 5555555543321 11111 2345666777776666544311 1111122222222222222222
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC------------CC-hhH-HHHHHHHHHHcCChHHHHH
Q 002790 294 IHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE------------KN-IVS-WNALITSYAEAGLCDEAVE 359 (881)
Q Consensus 294 i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~------------~~-~~~-~~~li~~~~~~g~~~~A~~ 359 (881)
.|....+.|-+..++++|.+.|++-.. |. +++ -......+.+.|+++.|..
T Consensus 663 ---------------lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daain 727 (1636)
T KOG3616|consen 663 ---------------LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAIN 727 (1636)
T ss_pred ---------------HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHH
Confidence 222233334444444445444443211 11 111 1112233445566666655
Q ss_pred HHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 002790 360 VFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVV 439 (881)
Q Consensus 360 l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 439 (881)
.|-+... .--.+.+......|.+|+.+++.++.+. .-...|..+.+-|++.|+++.|.++|-+.
T Consensus 728 hfiea~~-------------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 728 HFIEANC-------------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred HHHHhhh-------------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 5543221 1123445566777888888888777653 33345666777788888888888877542
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002790 440 RVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV 517 (881)
Q Consensus 440 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 517 (881)
..++.-|.+|.+.|++++|.++-.+...| .+..|-+-..-+-.+|++.+|.++|-... .|+.
T Consensus 792 --------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~---- 855 (1636)
T KOG3616|consen 792 --------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK---- 855 (1636)
T ss_pred --------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH----
Confidence 23456688888888888888888877665 44556666666677788888877765432 4543
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 002790 518 AVLSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHK 595 (881)
Q Consensus 518 ~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g 595 (881)
.|..|-+.|..++.+++..+-. |+ ..+...+..-|...|++.+|.+.|-+.+ -|.+-++.|...+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h------~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHH------GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASE 922 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhC------hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhh
Confidence 3556777777777777765432 33 3455566667777788888877776553 3455555666666
Q ss_pred CHHHHHHHHH
Q 002790 596 NTDVAEAMAS 605 (881)
Q Consensus 596 ~~~~A~~~~~ 605 (881)
-+++|.++.+
T Consensus 923 lw~dayriak 932 (1636)
T KOG3616|consen 923 LWEDAYRIAK 932 (1636)
T ss_pred hHHHHHHHHh
Confidence 6666655443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=1.4e-07 Score=100.56 Aligned_cols=211 Identities=13% Similarity=0.098 Sum_probs=151.7
Q ss_pred chHHHHHHHHHHHHHc-CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHH
Q 002790 426 AALNIGREIHGHVVRV-SMNKN--ILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALA 499 (881)
Q Consensus 426 g~~~~a~~i~~~~~~~-g~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~ 499 (881)
+..+.+..-+.+++.. ...|+ ...+..+...|.+.|+.++|...|++..+ | +...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666666666643 22222 45677778889999999999999998864 2 67899999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 002790 500 TFEEMIEAGFKPD-GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--P 576 (881)
Q Consensus 500 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~ 576 (881)
.|++..+. .|+ ..++..+..++...|++++|.+.++... ...|+..........+...+++++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999985 454 5578888888999999999999999998 34665432222233345678899999999665 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 577 MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIF-------GLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 577 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..|+...| .+. ....|+...+ ..++.+. +..|..+..|..++.+|.+.|++++|+..|++..+.+
T Consensus 195 ~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 222 2234444333 2333333 3455667899999999999999999999999888754
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=2.9e-07 Score=94.38 Aligned_cols=88 Identities=8% Similarity=-0.022 Sum_probs=38.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAG 563 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g 563 (881)
+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+. ...+...+..++..+...|
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALG 217 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHh
Confidence 3344444444444444444444331 112233444444444455555555555544422 1122333444444444555
Q ss_pred CHHHHHHHHHh
Q 002790 564 LLQEASDIVKN 574 (881)
Q Consensus 564 ~~~eA~~l~~~ 574 (881)
+.++|..+.+.
T Consensus 218 ~~~~a~~~~~~ 228 (234)
T TIGR02521 218 DVAAAQRYGAQ 228 (234)
T ss_pred hHHHHHHHHHH
Confidence 55555544433
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=3e-06 Score=86.03 Aligned_cols=442 Identities=12% Similarity=0.121 Sum_probs=202.5
Q ss_pred HHcCCChhHHHHHHhhCCC-C--CCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcc
Q 002790 73 YARFGRLFDARNVFETAPF-D--CKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFR 149 (881)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 149 (881)
+....++..|+.+++--.. + -..++..| +..++...|++++|+..++-..+.. .|+......|.-...-.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3445677888887765433 1 11233334 4456667889999998888877654 333333333322222334444
Q ss_pred cccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhH
Q 002790 150 FRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRME 229 (881)
Q Consensus 150 ~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 229 (881)
+| +++-.. .+.++-....|.+.-.+.++-++...+-+.+.... ..--+|.+.....-.+++|.+++.+..
T Consensus 109 eA----~~~~~k-----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EA----KSIAEK-----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HH----HHHHhh-----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 333221 12233333444455556666666555544443211 222233333333345778888888877
Q ss_pred HcCCCCCHhHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cccchhHHHHHHHHHhcCCCCc
Q 002790 230 LEGLEPNFVTWTS-LLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCAD--LAADHMGKVIHGFVIKGGFEDY 306 (881)
Q Consensus 230 ~~g~~pd~~ty~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~~ 306 (881)
.. .|+-...|. +.-+|.+..-++-+.++++--.+. -||+ |+..=+.+|.. .-.-..+++-.+.+.+.+-..
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 55 355444443 334566777777777766655543 1332 12222222221 111111111111111111000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHccCCCCCCCChhhHH
Q 002790 307 VFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEA-----GLCDEAVEVFSQLEKLDGGSMERPNVISWS 381 (881)
Q Consensus 307 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~ 381 (881)
-..+.-++++ ..-+.|++++-.+.+.- | .+--
T Consensus 253 -----------------------------------~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I------P--EARl 289 (557)
T KOG3785|consen 253 -----------------------------------YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI------P--EARL 289 (557)
T ss_pred -----------------------------------chhHHHHHHcCeEEEeCCccHHHhchHHHhhC------h--Hhhh
Confidence 0111222222 12344555444443311 1 1222
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHH-----HHhhhchHHHHHHHHHHHHHcCCCCch-hHHHHHHH
Q 002790 382 AVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLS-----VCAESAALNIGREIHGHVVRVSMNKNI-LVQNGLLN 455 (881)
Q Consensus 382 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-----~~~~~g~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~ 455 (881)
.|+--|.+.+++.+|..+.+++.- ..|.......+.. -..+...+..|.+.|+.+-+.+...|. .--.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 334445666666666666666642 2333333222222 222334556666666666555554443 22334444
Q ss_pred HHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHH
Q 002790 456 MYMKCGCLEEGHLVFEQIEK----KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV-AVLSACSHAGLVN 530 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~g~~~ 530 (881)
++.-..++++....++.+.. .|...+| +..+++..|.+.+|+++|-+.....++ |..+|. .|.++|.+.+.++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 55555556655555555442 1333332 455566666666666666554433222 233333 3334455555566
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH
Q 002790 531 EGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVW 584 (881)
Q Consensus 531 ~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~ 584 (881)
.|+.++-++. -..+ ......+.+-|.+++.+--|.+.|+.+ ...|++.-|
T Consensus 446 lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 5555544332 1111 122233344455555555555555555 334554444
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=98.91 E-value=2.1e-07 Score=108.55 Aligned_cols=179 Identities=7% Similarity=-0.077 Sum_probs=143.7
Q ss_pred cCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 002790 460 CGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIF 536 (881)
Q Consensus 460 ~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~ 536 (881)
.+++++|...+++..+. +...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35588999999887643 67788888888999999999999999999874 334557888888999999999999999
Q ss_pred HHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 537 DMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMP--MEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 537 ~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m~--~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
++.. .+.|+. ..+..+...+...|++++|.+.+++.. ..|+ ...+..+...+...|+.++|...++++....|
T Consensus 396 ~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 396 NECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9998 456763 333445556777999999999998872 2354 44566677778899999999999999888888
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 613 ETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+......+...|...| ++|...++++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 88888888888888888 5888888877654
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.91 E-value=4.1e-07 Score=101.27 Aligned_cols=95 Identities=13% Similarity=0.260 Sum_probs=58.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhc-----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREF-----RIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM--------PMEPN 580 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~-----~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m--------~~~pd 580 (881)
+++.+...|.+.|++++|.++++++.... +..+. -..++.|...|.+.+++.+|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 55555555555666666665555554321 11222 234555666666666666666666543 22355
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 581 A-YVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 581 ~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
. .+|..|...|...|+++.|+++.+.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 4788888889999999999988887763
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=1.1e-05 Score=91.14 Aligned_cols=282 Identities=11% Similarity=0.098 Sum_probs=169.0
Q ss_pred HHHHhcCChHHHHHHHhhcCC--CCeeh-HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHH-HHHHHHhc----
Q 002790 179 GMYAKMGQMSDSFKLFDKVRV--KNYIS-WNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTS-LLSSHARC---- 250 (881)
Q Consensus 179 ~~~~~~g~~~~A~~l~~~m~~--~~~~~-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~-li~~~~~~---- 250 (881)
..+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..++..+.+. .|+...|-. +..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 455778999999999977543 34444 445567788999999999999999988 466666544 44444222
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc-chhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002790 251 -GRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAA-DHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328 (881)
Q Consensus 251 -g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 328 (881)
.+.+...++|+++...- |.......+.-.+..... ...+...+....+.|+|+ +++.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25677788888887654 333333222212222111 223445556666777665 55666666765555555555
Q ss_pred HHhhccC------------------CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCC-hhhHHHHHHHH
Q 002790 329 LFSEIEE------------------KNIV--SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPN-VISWSAVIGAF 387 (881)
Q Consensus 329 ~~~~m~~------------------~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~-~~~y~~li~~~ 387 (881)
++..... |... ++.-+...|...|++++|++.+++.+++. |+ +..|..-...|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~Karil 238 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHH
Confidence 5554321 1221 23444556667777777777777777643 33 45666667777
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHH--------HHHHHHHHh
Q 002790 388 ASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQ--------NGLLNMYMK 459 (881)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~--------~~Li~~y~~ 459 (881)
-+.|++.+|.+.++..+... .-|...=+-....+.+.|+.++|.+++....+.+..|..... .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776554 334444455555666677777777777766665543222111 223456666
Q ss_pred cCCHHHHHHHHHhcc
Q 002790 460 CGCLEEGHLVFEQIE 474 (881)
Q Consensus 460 ~g~~~~A~~~~~~m~ 474 (881)
.|++..|.+-|..+.
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666555443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=6.2e-08 Score=97.06 Aligned_cols=230 Identities=15% Similarity=0.108 Sum_probs=142.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 002790 342 NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSV 421 (881)
Q Consensus 342 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 421 (881)
+.+.++|.+.|.+.+|.+.|+.-.+ ..|-+.||-.|-..|.+..++..|+.+|.+-.+. .|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh------
Confidence 3455566666666666666655544 3555556666666666666666666666555433 3444443
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHH
Q 002790 422 CAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENAL 498 (881)
Q Consensus 422 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 498 (881)
.......+-..++.++|.++++...+. ++.....+..+|.-.++++-|+
T Consensus 293 ----------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 293 ----------------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred ----------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH
Confidence 122233344445555666665555432 4444444555566666677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPME 578 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~ 578 (881)
..++++++.|+. +...|..+.-+|...+++|-++.-|++.... .-.|+
T Consensus 345 ryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~------------------------------ 392 (478)
T KOG1129|consen 345 RYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPG------------------------------ 392 (478)
T ss_pred HHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcc------------------------------
Confidence 777777766643 4455666666666666666666666555421 11122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 579 PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 579 pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
.-..+|-.|.......||+..|.+.++-++..+|++...++.|+-.-.+.|++++|..+++..+...
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 1234666666667778888888888888888888889999999999999999999999988887654
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.5e-07 Score=94.39 Aligned_cols=190 Identities=12% Similarity=0.125 Sum_probs=159.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcc
Q 002790 450 QNGLLNMYMKCGCLEEGHLVFEQIE--KKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV-AVLSACSHA 526 (881)
Q Consensus 450 ~~~Li~~y~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~ 526 (881)
-+.+..+|.+.|.+.+|.+.|+... .+-+.||-.|-..|.+..++..|+.++.+-.+. .|-.+||. ...+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3567889999999999999998765 357889999999999999999999999998876 67777664 455677788
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002790 527 GLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM---PMEPNAYVWGTLLNSCRMHKNTDVAEA 602 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m---~~~pd~~~~~~Ll~~~~~~g~~~~A~~ 602 (881)
++.++|.++++...+ ..| +++...++...|.-.++.+-|+.+++++ +.. ++..|+.+.-+|.-.+.+|.++-
T Consensus 304 ~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 999999999999984 344 5788888899999999999999999876 443 67788888888999999999999
Q ss_pred HHHHHhhc--CCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 603 MASQIFGL--ITE-TTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 603 ~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
-++++... +|+ -..+|+.++.+..-.|++.-|.+.|+-....+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999876 343 45789999999999999999999999877654
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=0.00012 Score=80.90 Aligned_cols=340 Identities=14% Similarity=0.102 Sum_probs=180.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCCh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRL 253 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 253 (881)
-.+.+..+...|+-++|-++- +.+-.. -+.|+.|.+.|.+..|.+....=.. +..|......+..++.+..-+
T Consensus 592 k~sy~q~l~dt~qd~ka~elk----~sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~ely 664 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELK----ESDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELY 664 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhc----cccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHH
Confidence 334445555556666555431 111111 2346667777777776655422111 134455555555555555556
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHhh
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVK-NALICVYGKHGDVKVAQNLFSE 332 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~~~~~g~~~~A~~~~~~ 332 (881)
++|-.+|+++..- ...+..+.+...+..|.++-+. .+|..+.+. ......+...|+++.|...|-+
T Consensus 665 dkagdlfeki~d~---------dkale~fkkgdaf~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 6666666554321 1112222222223333332221 122222211 1223344455666666655544
Q ss_pred ccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch
Q 002790 333 IEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS 412 (881)
Q Consensus 333 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 412 (881)
.. ..-..|.+....+.|.+|+.+++.++.+. .-..-|..+.+.|...|+++.|.++|-+.-
T Consensus 732 a~-----~~~kaieaai~akew~kai~ildniqdqk------~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------- 792 (1636)
T KOG3616|consen 732 AN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK------TASGYYGEIADHYANKGDFEIAEELFTEAD-------- 792 (1636)
T ss_pred hh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc------cccccchHHHHHhccchhHHHHHHHHHhcc--------
Confidence 21 11122444556677777777777776643 223346666677777777777777775431
Q ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 002790 413 VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNG 492 (881)
Q Consensus 413 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 492 (881)
.++-.|..|.+.|+++.|.++-.+. .|.+..+..|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-++|
T Consensus 793 -~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~ 864 (1636)
T KOG3616|consen 793 -LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHG 864 (1636)
T ss_pred -hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhC
Confidence 2344566677777777776665443 233444555555555666777777777777777666543 56667777
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 002790 493 LGENALATFEEMIEAGFKPDG--VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASD 570 (881)
Q Consensus 493 ~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 570 (881)
..++.+++.++- .|+. .|...+..-+-..|++..|...|-+.. -|.+-+++|...+.+++|.+
T Consensus 865 ~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 865 LDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred cchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHH
Confidence 777776666543 2232 355555556666677777766665443 23445556666666666666
Q ss_pred HHHhC
Q 002790 571 IVKNM 575 (881)
Q Consensus 571 l~~~m 575 (881)
+-+.-
T Consensus 930 iakte 934 (1636)
T KOG3616|consen 930 IAKTE 934 (1636)
T ss_pred HHhcc
Confidence 65543
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=3.2e-05 Score=78.55 Aligned_cols=378 Identities=16% Similarity=0.140 Sum_probs=220.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHH---HHHhCCChhHHHHHHHHhHHcCCCCCHhHHH-HHHHHHH
Q 002790 173 IVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFS---GFALNFDCDGALELFKRMELEGLEPNFVTWT-SLLSSHA 248 (881)
Q Consensus 173 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~-~li~~~~ 248 (881)
-.-.|-..+...|++.+|+.-|....+-|+..|.++.+ .|...|+...|+.=|.+..+. +||-..-. .-...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 33445566677899999999999988888888877764 688899999999999998876 78854321 1224467
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002790 249 RCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328 (881)
Q Consensus 249 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 328 (881)
++|.++.|..=|+...+.. |+..+- ..+..+. ..+. ........+..+.-.|+...|+.
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl----------~~~~------e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKL----------ALIQ------EHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHH----------HhHH------HHHHHHHHHHHHhcCCchhhHHH
Confidence 9999999999999988764 221110 0111111 0000 01122333444556677777777
Q ss_pred HHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 002790 329 LFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL 405 (881)
Q Consensus 329 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 405 (881)
....+.+ -|...+..-..+|...|.+..|+.-++...+.. ..+..++--+-..+...|+.+.++...++-++
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 7777665 355566666677777777777777666665543 34455555566666677777777766666654
Q ss_pred CCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHH
Q 002790 406 AKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMI 485 (881)
Q Consensus 406 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li 485 (881)
. .||...+-. .| .++.+..+.++.|.
T Consensus 252 l--dpdHK~Cf~--------------------------------------~Y---KklkKv~K~les~e----------- 277 (504)
T KOG0624|consen 252 L--DPDHKLCFP--------------------------------------FY---KKLKKVVKSLESAE----------- 277 (504)
T ss_pred c--CcchhhHHH--------------------------------------HH---HHHHHHHHHHHHHH-----------
Confidence 3 444322110 01 11111222222221
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc
Q 002790 486 SGYGMNGLGENALATFEEMIEAGFKPDGV---AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRA 562 (881)
Q Consensus 486 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~ 562 (881)
.....+++.++++..+...+.......+ .+..+-.++...|++.+|++...+.. .+.|+
T Consensus 278 -~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~-------------- 339 (504)
T KOG0624|consen 278 -QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPD-------------- 339 (504)
T ss_pred -HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCch--------------
Confidence 2234566677777777766653221122 33344455566677777777777776 45555
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 563 GLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 563 g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
|+.++.--..+|....+++.|+.-|+.+.+.++.+..+ +.| .+.|.++.+..-
T Consensus 340 -----------------dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~---------reG-le~Akrlkkqs~ 392 (504)
T KOG0624|consen 340 -----------------DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA---------REG-LERAKRLKKQSG 392 (504)
T ss_pred -----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH---------HHH-HHHHHHHHHHhc
Confidence 34455555556666677888888888888888877543 222 234444433332
Q ss_pred hCCCccCCcceeEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcc
Q 002790 643 TKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDND 698 (881)
Q Consensus 643 ~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~ 698 (881)
++..-++ -|-......++|..++.++- ..|.|||.
T Consensus 393 kRDYYKI----------------LGVkRnAsKqEI~KAYRKlA-----qkWHPDNF 427 (504)
T KOG0624|consen 393 KRDYYKI----------------LGVKRNASKQEITKAYRKLA-----QKWHPDNF 427 (504)
T ss_pred cchHHHH----------------hhhcccccHHHHHHHHHHHH-----HhcCCccc
Confidence 2222111 13344445567776666533 45899984
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.82 E-value=0.00013 Score=80.53 Aligned_cols=442 Identities=12% Similarity=0.058 Sum_probs=251.5
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhH
Q 002790 144 FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV---KNYISWNMMFSGFALNFDCDG 220 (881)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~ 220 (881)
..+.+..+++.+++++. +.+-...+....--.+...|+-++|......-.. ++.+.|-.+.-.+-...++++
T Consensus 19 E~kQYkkgLK~~~~iL~-----k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-----KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHhHHHHHHHHHH-----hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 44555556333333333 2333334444444445667888888887775443 455777777777777788888
Q ss_pred HHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHh
Q 002790 221 ALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIK 300 (881)
Q Consensus 221 A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 300 (881)
|.+.|......+ +-|...|.-+--.-++.|+++.....-.+..+..
T Consensus 94 aiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------------------------------- 139 (700)
T KOG1156|consen 94 AIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------------------------------- 139 (700)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---------------------------------
Confidence 888888877663 3344456655555566666666665555554431
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC-----CChhHHHH------HHHHHHHcCChHHHHHHHHHHHHccC
Q 002790 301 GGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE-----KNIVSWNA------LITSYAEAGLCDEAVEVFSQLEKLDG 369 (881)
Q Consensus 301 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~------li~~~~~~g~~~~A~~l~~~m~~~~~ 369 (881)
+.....|..+..++--.|+...|..++++..+ ++...+.. ......+.|..++|.+.+..-...-
T Consensus 140 ---~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i- 215 (700)
T KOG1156|consen 140 ---PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI- 215 (700)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-
Confidence 12233444455555556666666666665542 33332222 2344567788888888777655422
Q ss_pred CCCCCCChhh-HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHh-hh-chHHHHHHHHHHHHHcCC---
Q 002790 370 GSMERPNVIS-WSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCA-ES-AALNIGREIHGHVVRVSM--- 443 (881)
Q Consensus 370 ~~~~~p~~~~-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~-g~~~~a~~i~~~~~~~g~--- 443 (881)
-|... -.+-...+.+.+++++|..++..++.. .||..-|...+..+. +. +..+....++....+.-.
T Consensus 216 -----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 216 -----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred -----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 22222 234456788999999999999999876 788877776666554 33 333333355555443211
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cC----------
Q 002790 444 NKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK-DLITWNSMISGYGMNGLGENALATFEEMIE----AG---------- 508 (881)
Q Consensus 444 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g---------- 508 (881)
.|--...+. + .-..-.+...+++..+.++ =+.++..+...|-.-...+-..++...+.. .|
T Consensus 289 ~p~Rlplsv-l---~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 CPRRLPLSV-L---NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cchhccHHH-h---CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 111111111 1 0111122222333333222 122333433333222222211111111111 11
Q ss_pred CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCHHH
Q 002790 509 FKPDGV--AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP-M-EPNAYV 583 (881)
Q Consensus 509 ~~pd~~--t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~-~-~pd~~~ 583 (881)
-+|... |+.-+...+-+.|+++.|..+++... +-.|+ ++.|-.-...+..+|.+++|..++++.. . .||...
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 145544 55667778889999999999999988 66787 6778777889999999999999999883 2 244443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------Cc-chHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITE------TT-GSYM--LLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~-~~~~--~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
-.--..-..+.++.++|.+++..-...... +. -.|+ -=+.+|.+.|++-+|++-|..+.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 333444456788999999888776543211 11 1222 33667888899988887665543
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=0.00013 Score=83.87 Aligned_cols=567 Identities=14% Similarity=0.047 Sum_probs=286.1
Q ss_pred HHHHHHHHHhCCCCC-hHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 48 KQVHNQLIVTGANAS-AFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
..++..+....+.|+ ...|..|-..|+..-+...|.+.|+..-+-.+.+..++......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 556666666666666 4578888888888888999999998877666678899999999999999999999884333222
Q ss_pred CCCCC-cch--HHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCee
Q 002790 127 GVLGD-GFT--FPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYI 203 (881)
Q Consensus 127 g~~p~-~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 203 (881)
.|- ... |..+--.+-..++...+ ..-++...+. -+.|...|..|..+|.++|++..|.++|.+...-++.
T Consensus 556 --a~a~~~k~nW~~rG~yyLea~n~h~a----V~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 556 --APAFACKENWVQRGPYYLEAHNLHGA----VCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred --chHHHHHhhhhhccccccCccchhhH----HHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 111 111 22222224455666666 3333333332 2346778999999999999999999999877654443
Q ss_pred hHHH---HHHHHHhCCChhHHHHHHHHhHHc------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-------cC
Q 002790 204 SWNM---MFSGFALNFDCDGALELFKRMELE------GLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK-------RG 267 (881)
Q Consensus 204 ~y~~---li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-------~g 267 (881)
++.. .....+..|.+.+|+..+...... +..--..++-.+...+.-.|-..+|...++.-.+ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3222 223456788899999888876532 1111122233333333333434444444433222 11
Q ss_pred CCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH---H---HHHHHHhhccC--CChh
Q 002790 268 IEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDV---K---VAQNLFSEIEE--KNIV 339 (881)
Q Consensus 268 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~---~---~A~~~~~~m~~--~~~~ 339 (881)
..-+...+-.+-.+|. ++.... .. .|+......|..-.-+.+.. + -+.+.+-.-.+ .+..
T Consensus 709 ~~~~~~~Wi~asdac~----------~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACY----------IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY 776 (1238)
T ss_pred hhhhHHHHHHHhHHHH----------HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc
Confidence 1111111111111111 111111 00 11111111111101111111 0 00000000000 1233
Q ss_pred HHHHHHHHHHH----c----CChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc
Q 002790 340 SWNALITSYAE----A----GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN 411 (881)
Q Consensus 340 ~~~~li~~~~~----~----g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 411 (881)
+|..++..|.+ . .+...|+..+.+..+.. ..+..+||.|--. ...|.+.-|...|-+-.... +-+
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-----ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-----ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-----hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 44444444333 1 12234556666555533 3444555554333 44455555555554443321 333
Q ss_pred hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----c---CCHHHHHH
Q 002790 412 SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE-----K---KDLITWNS 483 (881)
Q Consensus 412 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~---~d~~~~~~ 483 (881)
..+|..+--.|....+++.|...+........ .+...|-.........|+.-++..+|..-. + ++..-|-.
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 44555555555666666666666665554321 122333222223334555556666655411 1 12333333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHH-
Q 002790 484 MISGYGMNGLGENALATFEEMIE---------AGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYA- 553 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~- 553 (881)
.......+|+.++-+...+++.. .|.+-+...|.......-+.+.+.+|..+..+...-...+-+...|+
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33333444444433333222211 12333445666666666666766666666555432111122333344
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc---chHHHHHHHHHH
Q 002790 554 ---CMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT---GSYMLLSNIYAA 627 (881)
Q Consensus 554 ---~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 627 (881)
.....++..|.++.|..-+.....+.|..+..+-+.. .-.++++++...|+++..+...+. .....++.....
T Consensus 1009 ak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1009 AKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 3345566677777777666655544455444444443 445678888888888877733332 334445555566
Q ss_pred cCCHHHHHHHHHHHH
Q 002790 628 SGRWEDAAKVRISAK 642 (881)
Q Consensus 628 ~g~~~eA~~~~~~m~ 642 (881)
.+.-+.|...+-+.+
T Consensus 1088 ~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVK 1102 (1238)
T ss_pred cccchHHHHHHHHHH
Confidence 666777766655444
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=3.8e-07 Score=87.94 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPD-GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVD 557 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~ 557 (881)
+...|.-+|...|+...|.+-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++.. .+.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 4555677888889999999999998886 444 4488888888899999999999999888 56776 678888899
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHH
Q 002790 558 LLGRAGLLQEASDIVKNMPMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWED 633 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 633 (881)
.+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|..+.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988844443 35788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 002790 634 AAKVRISAKTKGL 646 (881)
Q Consensus 634 A~~~~~~m~~~g~ 646 (881)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=0.00012 Score=76.32 Aligned_cols=302 Identities=11% Similarity=-0.010 Sum_probs=201.1
Q ss_pred HHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhH----HHHHHHHHhh
Q 002790 349 AEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVT----ISGLLSVCAE 424 (881)
Q Consensus 349 ~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~ 424 (881)
+-.++...|...+-.+..... .+-|+.....+.+.+...|+.++|...|++.+.. .|+..+ |..+ +..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~---lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~ 278 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTT---LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQ 278 (564)
T ss_pred HHhcccchhhhHHHHHHhhcc---CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHh
Confidence 334555555555554444332 4566777778888888888888888888877643 343322 2222 245
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHH
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATF 501 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~ 501 (881)
.|+.+....+...+....- .+...|-.-.......++++.|..+-++..+. ++..|-.-...+...|++++|.-.|
T Consensus 279 eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred ccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 5666666666555543220 01111111122334556788888877776544 4444544456677889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCC
Q 002790 502 EEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMV-DLLG-RAGLLQEASDIVKNM-PME 578 (881)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~eA~~l~~~m-~~~ 578 (881)
+..+... +-+..+|..|+.+|...|++.+|.-.-....+. +..+..+...+. ..+. .-..-++|.+++++. .++
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 9988752 345669999999999999999998877766632 223344544442 2232 233457889998876 777
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCcceeEEE
Q 002790 579 PNAY-VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEV 657 (881)
Q Consensus 579 pd~~-~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s~~~~ 657 (881)
|+-. ..+.+...|...|..+.++.++++.+...|++ ...+.|++.+.....+.+|++.|......
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~------------- 500 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ------------- 500 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------------
Confidence 8743 66777777999999999999999999887764 58899999999999999999999966553
Q ss_pred cCeEEEEeeccCCCcchHHHHHHHHHHHHHHH
Q 002790 658 KRKIHMFSSGNSLQSDLKNVCEVLEELALQME 689 (881)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 689 (881)
.|+.+...+-++.+-++|+
T Consensus 501 -------------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 501 -------------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -------------CccchHHHHHHHHHHhccC
Confidence 2555666666666666665
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=3.5e-05 Score=78.32 Aligned_cols=309 Identities=12% Similarity=0.092 Sum_probs=203.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH-H
Q 002790 306 YVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALI---TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW-S 381 (881)
Q Consensus 306 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y-~ 381 (881)
++.-.-.|.+.+...|++..|+..|....+-|...|.++. ..|...|+...|+.-+.+..+ .+||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle------lKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE------LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh------cCccHHHHHH
Confidence 3333445667777889999999999999887777776664 468888999999988888887 45664322 1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 002790 382 AVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCG 461 (881)
Q Consensus 382 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 461 (881)
.--..+.+.|.+++|..=|+..++. .|+..+ ...+..+.-..++-..+ ...+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCC
Confidence 2235678899999999999998876 343221 11222222111111111 12233445567
Q ss_pred CHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 002790 462 CLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 462 ~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
+...|+.....+.+. |...|..-..+|...|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777766542 56666666777777777777776666555432 33344555555666677777777777776
Q ss_pred HHHhcCCCCChh----HHHHH---H------HHHHHcCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHHcCCHHH
Q 002790 539 MVREFRIEPQME----HYACM---V------DLLGRAGLLQEASDIVKNM-PMEPNA--Y---VWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 539 m~~~~~~~p~~~----~~~~l---i------~~~~~~g~~~eA~~l~~~m-~~~pd~--~---~~~~Ll~~~~~~g~~~~ 599 (881)
.. .+.||.. .|..| . ......+++.++++-.+.. ..+|.. + .+..+-.+++..+++.+
T Consensus 249 CL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 249 CL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 66 5566632 12211 1 1233456666666655543 444542 2 33444555678899999
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
|++.+.++++.+|+|..++.--+.+|.-..++++|+.-|++..+-+
T Consensus 326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999887743
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.0011 Score=76.28 Aligned_cols=179 Identities=13% Similarity=0.081 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH 525 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (881)
.+.+|..+..+-...|.+.+|.+-|-+. .|+..|..+++...+.|.+++-...+....+..-.|... ..|+-+|.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 4567888888888888888888777543 356678888888888888888888877776665555544 456777777
Q ss_pred cCCHHHHHHHHH------------HHH-----Hhc-CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---------
Q 002790 526 AGLVNEGRRIFD------------MMV-----REF-RIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPME--------- 578 (881)
Q Consensus 526 ~g~~~~A~~l~~------------~m~-----~~~-~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~--------- 578 (881)
.+++.+-.++.. +.- +.. -+-.++..|..|...+...|.++.|.+--++....
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 777665443321 000 000 00112334555556666666666665555444200
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc
Q 002790 579 ------------------PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628 (881)
Q Consensus 579 ------------------pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (881)
....-..-|+.-|...|-+++.+.+++..+.++......|.-|+..|++-
T Consensus 1259 Cvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11223334556666777788888888888888777788888888877765
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=6.3e-05 Score=82.06 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=102.9
Q ss_pred HHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--ccCC
Q 002790 70 LSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACK--FMGS 147 (881)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~ 147 (881)
++.+.+.|++++|.+..+.+....|.+...+..=+-++.+.+.|++|+.+.+.-... ..+. .| .+=++|| +.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~-~~-~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVIN-SF-FFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcc-hh-hHHHHHHHHHccc
Confidence 556677788888888888887766667777777777788888888888555432211 1111 11 0234443 6677
Q ss_pred cccccchHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHh-CCChhHHHHHH
Q 002790 148 FRFRFSFGQIVHNHVLQMGFQGNVH-IVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFAL-NFDCDGALELF 225 (881)
Q Consensus 148 ~~~a~~~~~~~~~~m~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~-~g~~~~A~~l~ 225 (881)
.++| ...+. |..++.. +...-...+-+.|++++|..+|+.+.+.+...+...+.+-+- .+-.-.+ +
T Consensus 95 ~Dea----lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~-- 162 (652)
T KOG2376|consen 95 LDEA----LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-Q-- 162 (652)
T ss_pred HHHH----HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-H--
Confidence 7777 54444 4443332 444444556677888888888888876666665555443211 1111111 1
Q ss_pred HHhHHcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHH
Q 002790 226 KRMELEGLEPNFVTWTSLL---SSHARCGRLEETMDLFDMMR 264 (881)
Q Consensus 226 ~~m~~~g~~pd~~ty~~li---~~~~~~g~~~~A~~l~~~m~ 264 (881)
.|......| ..||..+. ..++..|++.+|+++++...
T Consensus 163 -~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 163 -LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred -HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 122222233 22444433 34567788888888888773
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.74 E-value=1.7e-05 Score=89.68 Aligned_cols=298 Identities=15% Similarity=0.114 Sum_probs=160.0
Q ss_pred HHHHhcCCHHHHHHHHhhccC--CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH-HHHHHHHHHC
Q 002790 315 CVYGKHGDVKVAQNLFSEIEE--KNIV-SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW-SAVIGAFASN 390 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y-~~li~~~~~~ 390 (881)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN------PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHhhh
Confidence 455788999999999988665 4544 44566778889999999999999999865 455544 4444444222
Q ss_pred -----CChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 002790 391 -----GRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAAL-NIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLE 464 (881)
Q Consensus 391 -----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 464 (881)
...+...++|+++... -|.......+.-.+.....+ ..+..++..+.+.|+++ +++.|-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 2467778888888665 35444443333223332233 34556666666777543 4455555555333333
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 002790 465 EGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACSHAGLVNEGRRIFDMMVRE 542 (881)
Q Consensus 465 ~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 542 (881)
-..+++..... .....+.....- ....-.|... ++.-+...|...|++++|+++.++.+
T Consensus 161 ~i~~l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-- 221 (517)
T PF12569_consen 161 IIESLVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-- 221 (517)
T ss_pred HHHHHHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Confidence 22222222110 000000000000 0000123321 33444445555666666666666555
Q ss_pred cCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCC---
Q 002790 543 FRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLI--TET--- 614 (881)
Q Consensus 543 ~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~--p~~--- 614 (881)
...|+ +..|..-...|-+.|++++|.+.++.. ... .|-..-+-....+.+.|+.++|+.++..-...+ |..
T Consensus 222 -~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 222 -EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred -hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 23454 455555666666666666666666555 222 233333333444556666666666665544332 111
Q ss_pred ----cchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 615 ----TGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 615 ----~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.....-.+.+|.+.|++..|++.|....+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12233567788888888888887766544
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=5.5e-05 Score=84.77 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=41.0
Q ss_pred ChHHHHHHHH--HHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 002790 62 SAFLAARVLS--IYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMR 124 (881)
Q Consensus 62 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 124 (881)
|..|-..+++ .|..-|+.+.|.+-.+.+++ -..|..|.+.+.+..+.+-|.-.+-.|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-----~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-----DSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-----hHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 3334444433 45667888888887777754 6789999999988888888777776664
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.69 E-value=9.4e-06 Score=86.65 Aligned_cols=164 Identities=10% Similarity=-0.048 Sum_probs=104.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA 522 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 522 (881)
+...|+.+...|...|++++|...|++..+ | +...|..+...+...|++++|++.|++..+. .|+..........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 455666677777777777777777777643 2 4567777777888888888888888888875 4544322222222
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHHc
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQE--ASDIVKNM-PME----P-NAYVWGTLLNSCRMH 594 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e--A~~l~~~m-~~~----p-d~~~~~~Ll~~~~~~ 594 (881)
+...++.++|...+++... ...|+...+ .+. ....|+..+ +.+.+.+. ... | ....|..+...+.+.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYE--KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHh--hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 3456678888888866542 223332222 222 233454433 33333221 111 2 234788889999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCcc
Q 002790 595 KNTDVAEAMASQIFGLITETTG 616 (881)
Q Consensus 595 g~~~~A~~~~~~~~~~~p~~~~ 616 (881)
|++++|+..|+++.+.+|++..
T Consensus 250 g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 250 GDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCHHHHHHHHHHHHHhCCchHH
Confidence 9999999999999999876543
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.8e-05 Score=81.66 Aligned_cols=415 Identities=11% Similarity=0.074 Sum_probs=236.3
Q ss_pred HHHhcCChHHHHHHHhhc---CCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHh-HHHHHHHHHHhcCChHH
Q 002790 180 MYAKMGQMSDSFKLFDKV---RVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFV-TWTSLLSSHARCGRLEE 255 (881)
Q Consensus 180 ~~~~~g~~~~A~~l~~~m---~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-ty~~li~~~~~~g~~~~ 255 (881)
+.+..|+++.|...|-+. ..+|.+.|..-..+|+..|++++|++=-.+-++. .|+.. .|+-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 445678888888888753 3457788888888888888888888776666655 67654 58888888888889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHH-----HHHHHhcCCHHHHHHHH
Q 002790 256 TMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNAL-----ICVYGKHGDVKVAQNLF 330 (881)
Q Consensus 256 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-----i~~~~~~g~~~~A~~~~ 330 (881)
|+.-|.+-.+.. +-+...++-+..+.. .+.+. .....+...+..+ -+.+...-.+..-+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~--------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA--------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh--------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 988887766542 112222333333320 00000 0001111111111 11111111122111111
Q ss_pred hhccCCChhHHHHHHHHHHHcCChHHHHHHHHH-----HHHccC---CCCCCCChhhHHHHHHHHHHCCChHHHHHHHHH
Q 002790 331 SEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQ-----LEKLDG---GSMERPNVISWSAVIGAFASNGRGEEALDLFRK 402 (881)
Q Consensus 331 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~~~---~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~ 402 (881)
...+ .. +..|....+...+.-.+.. +...+. .++..|. .+.. .......+
T Consensus 156 ~~~p----~~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~~~~~d 213 (539)
T KOG0548|consen 156 QKNP----TS----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGFPIIED 213 (539)
T ss_pred hcCc----Hh----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCCCccch
Confidence 1111 00 1111111111111111110 000000 0111111 0000 00000000
Q ss_pred HHH-CCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH---
Q 002790 403 MQL-AKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDL--- 478 (881)
Q Consensus 403 m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~--- 478 (881)
+.+ ...+--..-...+.++..+..+++.+.+.+...++.. .++.-++....+|...|.+.+....-+...+...
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r 291 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR 291 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH
Confidence 000 0001111223456666777778888888888877765 5666667777788888887777666655443311
Q ss_pred HHHH-------HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCh-h
Q 002790 479 ITWN-------SMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQM-E 550 (881)
Q Consensus 479 ~~~~-------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~-~ 550 (881)
.-|+ .+..+|.+.++++.|+..|.+....-..||.. .+....+++....+... -+.|.. .
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~ 359 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAE 359 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHH
Confidence 1222 23445666788889999998877654444322 12223444444444332 455653 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (881)
-...-...+.+.|++.+|++.|.++ ...| |...|.....+|.+.+++..|+.-++..++++|+....|..-+.++...
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 2223367788999999999999998 3344 5678888888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 002790 629 GRWEDAAKVRISAKTKG 645 (881)
Q Consensus 629 g~~~eA~~~~~~m~~~g 645 (881)
.+|++|++.|++..+..
T Consensus 440 k~ydkAleay~eale~d 456 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999776643
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.61 E-value=1.5e-06 Score=91.53 Aligned_cols=147 Identities=13% Similarity=0.018 Sum_probs=90.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHHcCC
Q 002790 488 YGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH---YACMVDLLGRAGL 564 (881)
Q Consensus 488 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~---~~~li~~~~~~g~ 564 (881)
+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|. .+..|... ..+++..+...+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchh
Confidence 33456677776666532 234455556666777777777777777776 34444221 1222333323345
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH-HHHHHHHHHH
Q 002790 565 LQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRW-EDAAKVRISA 641 (881)
Q Consensus 565 ~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~eA~~~~~~m 641 (881)
+.+|..+|+++. ..+++.+.+.+..++...|++++|+.+++++.+.+|.++.+...++-+....|+. +.+.+++..+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777777772 2356667777777777888888888888888888888888888888887888877 5566677766
Q ss_pred Hh
Q 002790 642 KT 643 (881)
Q Consensus 642 ~~ 643 (881)
++
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=0.00013 Score=84.07 Aligned_cols=173 Identities=9% Similarity=-0.014 Sum_probs=124.8
Q ss_pred HHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 464 EEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 464 ~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
..|...+....+ .+..+||.|.-. ...|++.-|..-|-+-.... +....+|..+...|.+..+++-|...|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 456677766543 477888887655 66678888887777766552 4556688888888999999999999999887
Q ss_pred HhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH--------
Q 002790 541 REFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-------PMEPNAYVWGTLLNSCRMHKNTDVAEAMA-------- 604 (881)
Q Consensus 541 ~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-------~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~-------- 604 (881)
.+.|+ ...|--..-.....|+.-++..+|..- +.-|+...|..-.......|+.++-+...
T Consensus 878 ---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred ---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 67775 566666655666788888888888762 22355555555544455666655544444
Q ss_pred --HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 605 --SQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 605 --~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
++.....|.....|...+....+.+.+++|.+...+.
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444558999999999999999999999988877665
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.0013 Score=71.36 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 002790 393 GEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNK-NILVQNGLLNMYMKCGCLEEGHLVFE 471 (881)
Q Consensus 393 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~ 471 (881)
.+.....+++....-..--..+|...++...+...++.|+.+|.++.+.+..+ ++.+.++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555555555443222223456666777777777778888888887776666 77777777777664 56667777776
Q ss_pred hcccC--C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcC--
Q 002790 472 QIEKK--D-LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACSHAGLVNEGRRIFDMMVREFR-- 544 (881)
Q Consensus 472 ~m~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~-- 544 (881)
.-.++ | ..--...++-+...++-..|..+|++....++.||.. .|..++.-=+.-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 54432 3 3333445555566666667777777777665555543 666777666667777777666666553332
Q ss_pred CCCChhHHHHHHHHHHHcCCH
Q 002790 545 IEPQMEHYACMVDLLGRAGLL 565 (881)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~ 565 (881)
..+....-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 222223333444444444433
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=3e-05 Score=77.26 Aligned_cols=410 Identities=10% Similarity=0.062 Sum_probs=236.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCC---CeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHH-HHHHHHh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVK---NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTS-LLSSHAR 249 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~-li~~~~~ 249 (881)
+.+.+-.+.+..++++|.+++..-.++ +......+..+|....++..|-+.++++... .|...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455555556777888888887765544 3345566667777888888888888888755 565555543 2355667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002790 250 CGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNL 329 (881)
Q Consensus 250 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~ 329 (881)
.+.+.+|+.+...|.+. |+. ++... ..-....-..+++..+..+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L----------------------~~~~l-----------qLqaAIkYse~Dl~g~rsL 134 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PAL----------------------HSRVL-----------QLQAAIKYSEGDLPGSRSL 134 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHH----------------------HHHHH-----------HHHHHHhcccccCcchHHH
Confidence 78888888888777543 110 00000 0000112246777788888
Q ss_pred HhhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 002790 330 FSEIEE-KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV 408 (881)
Q Consensus 330 ~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (881)
+++... .+..+.+.......+.|++++|.+-|....+-++ ......||.-+. ..+.++.+.|++...++.+.|+
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG----yqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG----YQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC----CCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 888874 4555555555666788999999999998888765 444567776554 4567888999999999888876
Q ss_pred CCchhH----HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHH
Q 002790 409 VANSVT----ISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK-----DLI 479 (881)
Q Consensus 409 ~p~~~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----d~~ 479 (881)
+-.+.. -+-.+++ ...|+ -..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++
T Consensus 210 r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred hcCCccCccceeccCch-hcccc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 432210 0000000 00000 00000000 0122333344567889999999999999754 777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI-EPQMEHYACMVDL 558 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~-~p~~~~~~~li~~ 558 (881)
|...+.-. -..+++.+..+-+.-+...+. --..||..++-.||+..-++.|-.++.+-. .... -.+...|+ |+++
T Consensus 279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLda 354 (459)
T KOG4340|consen 279 TLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDA 354 (459)
T ss_pred hhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHH
Confidence 77665332 124556666666666665532 335699999999999988888888775432 0000 11233333 3344
Q ss_pred HH-HcCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC----HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHH
Q 002790 559 LG-RAGLLQEASDIVKNMPMEPNAYVWGTLLNS-CRMHKN----TDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWE 632 (881)
Q Consensus 559 ~~-~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~-~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (881)
+. ..-..++|++-+..+...-.......-+.. -.++.+ ...+++-|++.+++-- .+....++.|....++.
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~ 431 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYP 431 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccH
Confidence 43 344667777666554211000111111111 112222 2223344444444421 24556777888899999
Q ss_pred HHHHHHHHHHhC
Q 002790 633 DAAKVRISAKTK 644 (881)
Q Consensus 633 eA~~~~~~m~~~ 644 (881)
.+.+.|..-.+.
T Consensus 432 ~vEk~Fr~Svef 443 (459)
T KOG4340|consen 432 MVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHhh
Confidence 999998866553
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=1.4e-05 Score=77.35 Aligned_cols=192 Identities=12% Similarity=0.051 Sum_probs=145.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 451 NGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 451 ~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
..|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|+.+.|.+.|++.++.. +-+....|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34566788888888888888887654 45578888888888888888888888888753 233446777777788888
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 528 LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMAS 605 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~ 605 (881)
++++|.+.|++...+-...--..+|..++-+-.++|+++.|.+.|++. ...|+ ..+...+.....+.|++-.|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888888754222223567888888888888888888888876 33343 4577778888888888888888888
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 606 QIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 606 ~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
......+.+.......+.+-...|+-+.+-++=..+..
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88887778888888888888888888887776554443
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=0.0033 Score=78.91 Aligned_cols=331 Identities=12% Similarity=0.045 Sum_probs=212.7
Q ss_pred HHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCC--CCCCh--hhHHHHHHH
Q 002790 315 CVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSM--ERPNV--ISWSAVIGA 386 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~p~~--~~y~~li~~ 386 (881)
......|+++.+...++.+.. .+..........+...|+++++...+......-.... ..+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344557888888888887742 2222233344555678999999999988765321000 01111 112223345
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCch----hHHHHHHHHHhhhchHHHHHHHHHHHHHc----CC-CCchhHHHHHHHHH
Q 002790 387 FASNGRGEEALDLFRKMQLAKVVANS----VTISGLLSVCAESAALNIGREIHGHVVRV----SM-NKNILVQNGLLNMY 457 (881)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y 457 (881)
+...|++++|...+++....--..+. ...+.+...+...|+++.|...+...... |. .........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999987753111121 23344455567789999999998888653 11 11123455667788
Q ss_pred HhcCCHHHHHHHHHhcccC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 002790 458 MKCGCLEEGHLVFEQIEKK-----------DLITWNSMISGYGMNGLGENALATFEEMIEA--GFKPD--GVAFVAVLSA 522 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~-----------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a 522 (881)
...|++++|...+++.... ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999988775421 1223445556677789999999999887653 11222 2344556667
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHY-----ACMVDLLGRAGLLQEASDIVKNMPME--PNA----YVWGTLLNSC 591 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~l~~~m~~~--pd~----~~~~~Ll~~~ 591 (881)
....|+.++|...++....-.........+ ...+..+...|+.++|.+++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999998875321111111111 11234456689999999998776321 111 1234566668
Q ss_pred HHcCCHHHHHHHHHHHhhcC------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 592 RMHKNTDVAEAMASQIFGLI------TETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...|+.++|...++++.... +....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999987651 1223567789999999999999999999988754
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=0.00017 Score=79.71 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHH
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGF-KPDG--VAFVAVLSA 522 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~ll~a 522 (881)
....+...+...|++++|...+++..+. +...+..+...+...|++++|...+++...... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344555677777888887777776532 455667777777778888888888877766421 1222 234456667
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHHHcCCHHHHHHH--H-Hh---C-CCCCCHHHHHHHHHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHY-A--CMVDLLGRAGLLQEASDI--V-KN---M-PMEPNAYVWGTLLNSCR 592 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~l--~-~~---m-~~~pd~~~~~~Ll~~~~ 592 (881)
+...|++++|..++++........+..... + .+..-+...|..+.+.+. + .. . ..............++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 777888888888887765221111111111 1 223333344432222222 1 11 1 11111122234555577
Q ss_pred HcCCHHHHHHHHHHHhhcC-C--------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 593 MHKNTDVAEAMASQIFGLI-T--------ETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 593 ~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..|+.+.|..+++.+.... . .........+.++.+.|++++|.+.+......+
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888999998888876542 1 124455677888899999999999999887654
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=3.8e-06 Score=88.45 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=101.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH----AGLV 529 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~ 529 (881)
...|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 34556677777777776654 45566666777777888888888888887753 333 344445554432 2347
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNT-DVAEAMASQ 606 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~-~~A~~~~~~ 606 (881)
.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...| |+.+...++..+...|+. +.+.++.++
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 788888888763 33456777788888888888888888887765 3333 345666677766666766 677788888
Q ss_pred HhhcCCCCc
Q 002790 607 IFGLITETT 615 (881)
Q Consensus 607 ~~~~~p~~~ 615 (881)
+....|..+
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 888888765
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.0069 Score=75.99 Aligned_cols=263 Identities=12% Similarity=-0.035 Sum_probs=131.9
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCeeh--HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChH
Q 002790 177 LIGMYAKMGQMSDSFKLFDKVRVKNYIS--WNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLE 254 (881)
Q Consensus 177 Li~~~~~~g~~~~A~~l~~~m~~~~~~~--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~ 254 (881)
....|...|++.+|.............. .......+...|+.+.+.+.++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444556677776666555544322111 11122334556777777777776632211122222233445556788889
Q ss_pred HHHHHHHHHHHcCC------CCCHHH--HHHHHHHHhccccchhHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCC
Q 002790 255 ETMDLFDMMRKRGI------EVGAEA--IAVVLSVCADLAADHMGKVIHGFVIKGGFEDY----VFVKNALICVYGKHGD 322 (881)
Q Consensus 255 ~A~~l~~~m~~~g~------~p~~~t--~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~Li~~~~~~g~ 322 (881)
++..++....+.-- .+.... ...+-..+...|+.+.+....+.....--..+ ....+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 98888887654311 111111 11111233456677777777766554211111 1233445555667777
Q ss_pred HHHHHHHHhhccC-------CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCC--C-ChhhHHHHHHHHHHC
Q 002790 323 VKVAQNLFSEIEE-------KN--IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMER--P-NVISWSAVIGAFASN 390 (881)
Q Consensus 323 ~~~A~~~~~~m~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~--p-~~~~y~~li~~~~~~ 390 (881)
+++|...+.+... +. ..++..+...+...|++++|...+++........... + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 7777777766542 11 1233444556667777777777776655432100000 1 122334444556666
Q ss_pred CChHHHHHHHHHHHHCC--CCCc--hhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 002790 391 GRGEEALDLFRKMQLAK--VVAN--SVTISGLLSVCAESAALNIGREIHGHVV 439 (881)
Q Consensus 391 g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 439 (881)
|++++|...+++..... ..+. ...+..+.......|+.+.|.+.+....
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777776654321 1111 1222223334445566666666555553
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00043 Score=77.94 Aligned_cols=251 Identities=10% Similarity=0.118 Sum_probs=129.3
Q ss_pred CCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchH
Q 002790 76 FGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFG 155 (881)
Q Consensus 76 ~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 155 (881)
.|.+++|..+|.+.++ |..|=..|-..|.+++|+++-+.=-+-.. ..||..-..-+-..++++.|+++.
T Consensus 813 LgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 3555666666655544 33333445556777777766554222111 234444444444455555552211
Q ss_pred -------HHHHHHHHHhC--------CCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhH
Q 002790 156 -------QIVHNHVLQMG--------FQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDG 220 (881)
Q Consensus 156 -------~~~~~~m~~~g--------~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~ 220 (881)
.++++.+.+.. -..|...|.---.-+-..|++|.|+.++.... -|-++++..|-.|+.++
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchH
Confidence 12222221110 01223333333333334577777777766543 46667777777777777
Q ss_pred HHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch-----------
Q 002790 221 ALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH----------- 289 (881)
Q Consensus 221 A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------- 289 (881)
|-++-++- -|....-.+.+.|-..|++.+|...|-+.+ +|...|+.|...+--+
T Consensus 957 Aa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 957 AARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred HHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 77776653 344455567888888888888888887654 3444555554333211
Q ss_pred ----hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--------------CChhHHHHHHHHHHHc
Q 002790 290 ----MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--------------KNIVSWNALITSYAEA 351 (881)
Q Consensus 290 ----~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--------------~~~~~~~~li~~~~~~ 351 (881)
.+-..+++ .|. -....+..|-+.|.+.+|+++-=+-.+ .|....+--.+.++..
T Consensus 1022 ~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred hhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 11122221 111 112345567788888777765322221 2444455555556666
Q ss_pred CChHHHHHHHHHHH
Q 002790 352 GLCDEAVEVFSQLE 365 (881)
Q Consensus 352 g~~~~A~~l~~~m~ 365 (881)
.++++|..++-...
T Consensus 1094 ~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766665443
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00016 Score=72.27 Aligned_cols=196 Identities=12% Similarity=0.006 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHH-HHHH
Q 002790 64 FLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLV-IRAC 142 (881)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~ 142 (881)
--+.+++..+.+..++++|++++....+..+.+....+.+..+|....++..|-..++++... .|...-|..- ...+
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 345667777788899999999997766655668888999999999999999999999998765 4544443221 1234
Q ss_pred HccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCChHHHHHHHhhcCC-CCeehHHHHHHHHHhCCChh
Q 002790 143 KFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIG--MYAKMGQMSDSFKLFDKVRV-KNYISWNMMFSGFALNFDCD 219 (881)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~--~~~~~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~~g~~~ 219 (881)
.+.+.+..| ..+...|.+. ++...-..-+. ..-..+++..++.++++.+. .+..+-+...-..-+.|+++
T Consensus 89 Y~A~i~ADA----LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADA----LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHH----HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHH
Confidence 455556666 5555554332 22111111111 12345888899999999884 55555555555556899999
Q ss_pred HHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002790 220 GALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIE 269 (881)
Q Consensus 220 ~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 269 (881)
+|.+-|+...+-|--.....|+..+ +..+.|++..|++...++.++|++
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 9999999887654334455777555 556778999999999999988864
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=0.00039 Score=76.76 Aligned_cols=292 Identities=14% Similarity=0.033 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccC---CChh---HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHH
Q 002790 309 VKNALICVYGKHGDVKVAQNLFSEIEE---KNIV---SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSA 382 (881)
Q Consensus 309 ~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~ 382 (881)
.+..+...+...|+.+.+...+....+ ++.. ........+...|++++|.+.+++..+.. +.|...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~~a~~~ 82 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-----PRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHH
Confidence 344444455555555555444444321 1111 11122334556677777777777776643 233333332
Q ss_pred HHHHHHH----CCChHHHHHHHHHHHHCCCCCchh-HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 002790 383 VIGAFAS----NGRGEEALDLFRKMQLAKVVANSV-TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMY 457 (881)
Q Consensus 383 li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (881)
...+.. .+..+.+.+.+.. .....|+.. ....+...+...|++++|.+.++...+.. +.+...+..+...|
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 222222 3334444444433 112233322 22334445667777888888887777754 33456667777788
Q ss_pred HhcCCHHHHHHHHHhcccC-----C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHcc
Q 002790 458 MKCGCLEEGHLVFEQIEKK-----D--LITWNSMISGYGMNGLGENALATFEEMIEAGF-KPDGVAF-V--AVLSACSHA 526 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~-----d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~-~--~ll~a~~~~ 526 (881)
...|++++|...+++..+. + ...|..+...+...|++++|..++++...... .+..... . .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 8888888888888776532 2 12355677777888888888888888754321 1111111 1 223333334
Q ss_pred CCHHHHHHH---HHHHHHhcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CC---CH----HHHHHHHHH--H
Q 002790 527 GLVNEGRRI---FDMMVREFRI-EPQMEHYACMVDLLGRAGLLQEASDIVKNMPM--EP---NA----YVWGTLLNS--C 591 (881)
Q Consensus 527 g~~~~A~~l---~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~--~p---d~----~~~~~Ll~~--~ 591 (881)
|..+.+.++ ..... ...- ............++...|+.++|..+++.+.. +. .. .+-..++.+ +
T Consensus 239 g~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 239 GHVDVGDRWEDLADYAA-WHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CCCChHHHHHHHHHHHH-hhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 432222222 11111 1000 00111222456667788888888888877611 11 11 122223333 5
Q ss_pred HHcCCHHHHHHHHHHHhhc
Q 002790 592 RMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~ 610 (881)
...|+.++|...+.+++..
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6888999999888887654
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=2.4e-05 Score=80.83 Aligned_cols=179 Identities=13% Similarity=0.008 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----H
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DL---ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV----A 515 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 515 (881)
.+..+-.+...|.+.|++++|...|+++.+. +. ..+..+...+.+.|++++|...++++.+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 4556666677777778888888877776532 11 355666777777788888888888777652 3211 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002790 516 FVAVLSACSHA--------GLVNEGRRIFDMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGT 586 (881)
Q Consensus 516 ~~~ll~a~~~~--------g~~~~A~~l~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~ 586 (881)
+..+..++... |+.++|.+.++.+.+. .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44444444443 5677777777777633 4442 22222111100 00000 011124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGLITET---TGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 587 Ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...+.+.|++++|+..++++++..|.+ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566889999999999999999886654 478899999999999999999999887664
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=4e-07 Score=61.31 Aligned_cols=34 Identities=38% Similarity=0.835 Sum_probs=30.5
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002790 231 EGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMR 264 (881)
Q Consensus 231 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 264 (881)
+|+.||..||++||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999884
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=1.6e-05 Score=86.63 Aligned_cols=195 Identities=13% Similarity=0.093 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--------CCHHHH
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFK--------PDGVAF 516 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~ 516 (881)
..|.-|.......++-..|+..+.+..+- |......|.-.|...|.-.+|++.|+.-+....+ ++...-
T Consensus 320 eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 320 EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE 399 (579)
T ss_pred HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence 33333433444444444455555544432 4555666666666667666777777666543210 000000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMH 594 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~ 594 (881)
.. ..+.....+....++|-++....+..+|+.++..|.-.|.-.|.+++|.+.|+.. ..+|+ ...||-|...+...
T Consensus 400 ~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 400 NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 00 1122223345556666666656676688899999999999999999999999988 66665 56999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 595 KNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 595 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+.++|+..|.+++++.|.-..+.+.|+..|...|.++||.+.|-.+..-
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998876653
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=0.00011 Score=87.24 Aligned_cols=199 Identities=11% Similarity=0.130 Sum_probs=166.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK--------DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV 517 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 517 (881)
+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|++..+. .--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4566777788888899999999999987643 2347888888877888888899999999874 22234788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHH
Q 002790 518 AVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP---NAYVWGTLLNSCRM 593 (881)
Q Consensus 518 ~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p---d~~~~~~Ll~~~~~ 593 (881)
.|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++++. ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999998877 55678999999999999999999999876 2223 34455666677789
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKK 648 (881)
Q Consensus 594 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~ 648 (881)
.|+.+.+..+|+..+.-.|.-...|+.++++-.+.|+.+.+..+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999887643
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.30 E-value=9.3e-07 Score=59.54 Aligned_cols=34 Identities=35% Similarity=0.673 Sum_probs=29.2
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 002790 165 MGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR 198 (881)
Q Consensus 165 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 198 (881)
.|+.||..+||.||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788899999999999999999999998888874
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.29 E-value=0.011 Score=64.49 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKP-DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
.+|...+....+..-...|..+|.+..+.+..+ +...+++++.-+| .++.+-|.++|+.-.+++|-. +.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence 456666666666666777777777777776666 4445566666555 456777777777766554332 334456677
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC----cchHHHHHHHHHHc
Q 002790 558 LLGRAGLLQEASDIVKNM---PMEPN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITET----TGSYMLLSNIYAAS 628 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m---~~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 628 (881)
-+...++-..|..+|++. ...|| ...|..++.--..-|+...+.++-++.....|.+ ...-..+.+.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 777777777777777776 12333 3578888877777888888877777776655521 12334556666666
Q ss_pred CCHHHHHHHHHHH
Q 002790 629 GRWEDAAKVRISA 641 (881)
Q Consensus 629 g~~~eA~~~~~~m 641 (881)
+.+..-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 6655444444433
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=4.9e-05 Score=75.53 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCC--HHH
Q 002790 526 AGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNS-CRMHKN--TDV 599 (881)
Q Consensus 526 ~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~-~~~~g~--~~~ 599 (881)
.++.+++...++...+ ..| +...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4555666666666552 244 3667777777777777777777777766 4444 45566677665 356666 589
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
|.++++++++.+|.++.++..++..+.+.|++++|+..|+++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999887754
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.0019 Score=70.22 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=73.3
Q ss_pred HcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHccCCccccc
Q 002790 74 ARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGD-GFTFPLVIRACKFMGSFRFRF 152 (881)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~ 152 (881)
...|+++.|+..|-+...-.|+|-+.|+.-..+|+..|++++|++=-.+-++. .|+ ...|+-.-.++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA- 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA- 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH-
Confidence 45689999999997766656778888998999999999999888766665554 344 45677777788888888888
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002790 153 SFGQIVHNHVLQMGFQGNVHIVNELIGMY 181 (881)
Q Consensus 153 ~~~~~~~~~m~~~g~~~~~~~~~~Li~~~ 181 (881)
..-+..-++.. +.|...++-|..++
T Consensus 90 ---~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ---ILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred ---HHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 66666655542 33455666666666
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=7.9e-05 Score=87.51 Aligned_cols=139 Identities=11% Similarity=0.081 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYAC 554 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~ 554 (881)
++..+..|.....+.|++++|..+++...+. .||.. ....+...+.+.+++++|...+++.. ...|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 5777777888888888888888888888875 66655 66677778888888888888888887 45666 566777
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHH
Q 002790 555 MVDLLGRAGLLQEASDIVKNMP-MEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~-~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 620 (881)
+..++.+.|++++|.++|++.- ..|+ ..++.++..++.+.|+.++|...|+++++...+-...|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 7888888888888888888873 3344 5678888888888888888888888888775554444443
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.21 E-value=2e-05 Score=74.09 Aligned_cols=93 Identities=12% Similarity=-0.110 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 002790 552 YACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (881)
+..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|+..|+++.+.+|.++..+..++.++.+.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444555666666666666666665 3333 45567777777777777777877787777777777777778888887888
Q ss_pred CHHHHHHHHHHHHhC
Q 002790 630 RWEDAAKVRISAKTK 644 (881)
Q Consensus 630 ~~~eA~~~~~~m~~~ 644 (881)
++++|++.++...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888887777776654
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.21 E-value=4.5e-05 Score=71.65 Aligned_cols=122 Identities=9% Similarity=0.001 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-P 576 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~ 576 (881)
.+|++.++. .|+. +.....++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 455555543 4443 4455666777888888888888777 44554 677777888888888888888888777 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 002790 577 MEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAA 627 (881)
Q Consensus 577 ~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (881)
..| +...+..+..++...|+.++|+..++++++..|.++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 333 567888888888999999999999999999999999888777766543
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00012 Score=79.94 Aligned_cols=217 Identities=19% Similarity=0.248 Sum_probs=158.0
Q ss_pred HHHHhcCCHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCC
Q 002790 315 CVYGKHGDVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNG 391 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g 391 (881)
.-+.+.|++.+|.-.|+..... +...|--|......+++-..|+..+++..+.. +.|......|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-----P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-----PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-----CccHHHHHHHHHHHhhhh
Confidence 3456789999999999987763 45689889889999999999999999999865 567788888899999999
Q ss_pred ChHHHHHHHHHHHHCCCC--------CchhHHHHHHHHHhhhchHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHhcCC
Q 002790 392 RGEEALDLFRKMQLAKVV--------ANSVTISGLLSVCAESAALNIGREIHGHVV-RVSMNKNILVQNGLLNMYMKCGC 462 (881)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~-~~g~~~~~~~~~~Li~~y~~~g~ 462 (881)
.-.+|++.++.......+ ++...-.. ..+.....+....++|-++. ..+..+|+.++..|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999988654210 00000000 12233334445555555553 45555777788888878888888
Q ss_pred HHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 002790 463 LEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 463 ~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
+++|...|+.... | |...||-|...++...+.++|+..|++.++. +|+-+ ....|.-+|...|.+++|...|-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888888887753 3 7778888888888888888888888888874 67755 555566678888888888877665
Q ss_pred HH
Q 002790 539 MV 540 (881)
Q Consensus 539 m~ 540 (881)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 54
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=9.7e-05 Score=82.65 Aligned_cols=211 Identities=12% Similarity=0.014 Sum_probs=153.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCC
Q 002790 416 SGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGL 493 (881)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~ 493 (881)
..+...+.+.|-...|..+++.. ..+...|.+|+..|+..+|..+..+-.+ +|...|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 33444445555555565555533 3345567788888877777777665543 467777777777666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHH
Q 002790 494 GENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIV 572 (881)
Q Consensus 494 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~ 572 (881)
+++|.++++..... .-..+..-..+.++++++.+.|+.-. .+.|- ..+|-.+.-+..+.++++.|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 77788877654432 11111122234678888888888766 34443 678888888888899999998888
Q ss_pred HhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 573 KNM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 573 ~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
... ...||. ..||.+-.+|.+.++-.+|...+.++.+-+-.+..++....-...+.|.|++|++.+.++.+-.
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 776 566765 5899999999999999999999999999888888888888889999999999999999987643
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.00025 Score=79.51 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH
Q 002790 310 KNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS 389 (881)
Q Consensus 310 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~ 389 (881)
-..+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+..+ .+||...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le------k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE------KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc------CCCcchhHHHhhhhccC
Confidence 3344455555555555555555532 344455555555555555555554444 14455555555544444
Q ss_pred CCChHHHHHHHHH
Q 002790 390 NGRGEEALDLFRK 402 (881)
Q Consensus 390 ~g~~~~A~~l~~~ 402 (881)
..-+++|.++++.
T Consensus 470 ~s~yEkawElsn~ 482 (777)
T KOG1128|consen 470 PSLYEKAWELSNY 482 (777)
T ss_pred hHHHHHHHHHhhh
Confidence 4445555555443
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.05 E-value=0.00091 Score=79.85 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=169.7
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCC
Q 002790 304 EDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERP 375 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p 375 (881)
|.+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|++..+.- .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------d 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------D 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc------c
Confidence 55667888888888999999999999988764 123578888888777888888889999888732 2
Q ss_pred ChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-CchhHHHHHH
Q 002790 376 NVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMN-KNILVQNGLL 454 (881)
Q Consensus 376 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~~~~~~~~Li 454 (881)
....|..|...|.+.+..++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.++++.-.+ -.+......+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 34578888999999999999999999998763 356677888888888888889999999888774322 2455666667
Q ss_pred HHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCH
Q 002790 455 NMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACSHAGLV 529 (881)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~ 529 (881)
.+-.+.|+.+.++.+|+..... -...|+..|+.-.++|+.+.+..+|++....++.|-.. .|...+.-=.+.|+-
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 7788999999999999987642 56789999999999999999999999999988777543 344444433344443
Q ss_pred H
Q 002790 530 N 530 (881)
Q Consensus 530 ~ 530 (881)
+
T Consensus 1688 ~ 1688 (1710)
T KOG1070|consen 1688 K 1688 (1710)
T ss_pred h
Confidence 3
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.04 E-value=0.00028 Score=72.78 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=124.5
Q ss_pred CchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CH---HHH
Q 002790 410 ANSVTISGLLSVCAESAALNIGREIHGHVVRVSMN-K-NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DL---ITW 481 (881)
Q Consensus 410 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~---~~~ 481 (881)
.....+..+...+.+.|+++.|...++.+.+.... | ....+..+...|.+.|++++|...++++.+. +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556677777888999999999999999875432 1 1246677889999999999999999998642 22 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHH
Q 002790 482 NSMISGYGMN--------GLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHY 552 (881)
Q Consensus 482 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~ 552 (881)
..+..++... |+.++|.+.|+++... .|+.. ....+... .. . .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHH
Confidence 5555666554 6789999999999886 55543 22111111 00 0 0000 0112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 553 ACMVDLLGRAGLLQEASDIVKNM----PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 553 ~~li~~~~~~g~~~eA~~l~~~m----~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
..+...|.+.|++++|...+++. +..| ....+..+..++.+.|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788889999988888776 2223 245788888888999999999988887766554
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.002 Score=69.57 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=94.8
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHH
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTD 598 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~ 598 (881)
.+...|.+++|+..++.+.++ .|+ +..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345678888888888888743 555 556667788888999999999988887 55666 557777888888899999
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 599 VAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 599 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+|+.+++.....+|+++..|..|+.+|...|+..+|...+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999888888999999999999998888888888777665543
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=8.7e-05 Score=69.04 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=81.2
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHH
Q 002790 544 RIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620 (881)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 620 (881)
...|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++.+..|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34554 345566677777788888888887776 3333 56677888888888899999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 621 LSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 621 l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
++.+|...|++++|.+.+++..+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998877753
No 123
>PLN02789 farnesyltranstransferase
Probab=97.98 E-value=0.0016 Score=69.63 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=120.0
Q ss_pred HHHhcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 002790 456 MYMKCG-CLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLG--ENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLV 529 (881)
Q Consensus 456 ~y~~~g-~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (881)
.+.+.| +++++...++++.+ ++...|+.....+.+.|+. ++++++++++++.. +-|...|.....++.+.|++
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhH
Confidence 334444 45677777766653 2445666555455555542 56778888887764 33556777777777788888
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----C
Q 002790 530 NEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRA---GLL----QEASDIVKNM-PMEP-NAYVWGTLLNSCRMH----K 595 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~----~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~----g 595 (881)
+++++.++++++. .| +...|+.....+.+. |.. ++++++..++ ...| |...|+.+...+... +
T Consensus 159 ~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 159 EDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 8888888888733 33 355666665555544 222 4566666444 4444 455788887777663 4
Q ss_pred CHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC------------------CHHHHHHHHHHH
Q 002790 596 NTDVAEAMASQIFGLITETTGSYMLLSNIYAASG------------------RWEDAAKVRISA 641 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~eA~~~~~~m 641 (881)
+..+|...+.++....|.++.....|++.|+... ..++|.++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 4567888999988888999999999999998643 235677777766
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.0012 Score=77.90 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=115.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHH
Q 002790 442 SMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFV 517 (881)
Q Consensus 442 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~ 517 (881)
.+..++..+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 4566788888899999999999999999999864 4 5667888889999999999999999999986 55554 566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 002790 518 AVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTLL 588 (881)
Q Consensus 518 ~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~Ll 588 (881)
.+..++.+.|++++|..+|+++.. ..|+ ...+..+..++...|+.++|...|++. ...|-...|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667788899999999999999984 3455 788999999999999999999999987 3334455555444
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.94 E-value=0.00012 Score=67.71 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
......+...+...|++++|.++|+-. ...| +...|..|..+|...|++++|+..|..+..+.|+++..+..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455566777788999999999999887 4444 45688889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 002790 627 ASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 627 ~~g~~~eA~~~~~~m~~~ 644 (881)
+.|+.++|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987764
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.92 E-value=0.0016 Score=77.42 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIE 506 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 506 (881)
++..|..+|-+.|+.++|..+++++.+- |+...|.+...|+.. +.++|.+++.+...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 4444555555555555555555555431 444555555555555 55555555554443
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0072 Score=60.22 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA----GLV 529 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----g~~ 529 (881)
...|+..|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+. +.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 345566666666666655522 2222222223334445566666666666642 2444555555555432 335
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTLLNSCRMHK-NTDVAEAMASQ 606 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~Ll~~~~~~g-~~~~A~~~~~~ 606 (881)
.+|.-+|++|.+ ...|++.+.+-...++...|++++|..++++. +...++.+...++-.....| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 566666666652 23455555555555555555555555555554 11223334433333332222 33334445555
Q ss_pred HhhcCCCCc
Q 002790 607 IFGLITETT 615 (881)
Q Consensus 607 ~~~~~p~~~ 615 (881)
+....|..+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 555555443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.0023 Score=69.11 Aligned_cols=137 Identities=20% Similarity=0.193 Sum_probs=111.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCC
Q 002790 487 GYGMNGLGENALATFEEMIEAGFKPDGVAFVA-VLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGL 564 (881)
Q Consensus 487 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (881)
.+...|..++|+..++.++.. .||...|.. ....+.+.++.++|.+.++++. ...|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCC
Confidence 445678899999999998876 666665544 4556889999999999999998 56787 6667788899999999
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 565 LQEASDIVKNM--PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 565 ~~eA~~l~~~m--~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
+.+|+..++.. ..+-|+..|..|..+|...|+..++.... +..|.-.|+|++|+..+...+
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence 99999999887 34456789999999999999988876554 456778999999999999988
Q ss_pred hCC
Q 002790 643 TKG 645 (881)
Q Consensus 643 ~~g 645 (881)
++.
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 764
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.004 Score=61.52 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 002790 450 QNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSM---ISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA 526 (881)
Q Consensus 450 ~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (881)
|..++-+...+|+.+.|..+++.+...=+.++... ..-+-..|++++|+++++..++.. +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 44455566777888888888888754311111111 112345788999999999999876 66677887777777778
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---cCCHHHHH
Q 002790 527 GLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRM---HKNTDVAE 601 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~---~g~~~~A~ 601 (881)
|+--+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -..|- +..+..+...+.. ..+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888753 5678999999999999999999999999998 44454 4455666666433 34788999
Q ss_pred HHHHHHhhcCCCCcchHH
Q 002790 602 AMASQIFGLITETTGSYM 619 (881)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~ 619 (881)
.+|.+++++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999986654433
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00058 Score=67.86 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 002790 510 KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTL 587 (881)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~L 587 (881)
.|+......+-.++...|+-+....+...... .-..|....+.++....+.|++.+|...+++. ..++|...|+-+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44333334455556666666666666555431 12223445555777777777777777777776 344566677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 588 LNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 588 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..+|-+.|++++|...|.++.++.|.++..++.|+..|.-.|+.+.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7777777777777777777777777777777777777777777777777777666543
No 131
>PLN02789 farnesyltranstransferase
Probab=97.83 E-value=0.002 Score=68.93 Aligned_cols=184 Identities=8% Similarity=0.050 Sum_probs=135.8
Q ss_pred HHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--H
Q 002790 456 MYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNG-LGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGL--V 529 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~--~ 529 (881)
.+.+.++.++|....+++.+. +...|+.....+...| +++++++.++++.+.. +-+..+|+.-...+.+.|+ .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 344567788888888887653 4456776666666777 5799999999999874 3334456655555556665 3
Q ss_pred HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CC----HHH
Q 002790 530 NEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMH---KN----TDV 599 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~---g~----~~~ 599 (881)
+++..+++++. ...|. ...|+....++.+.|++++|++.++++ ... -|..+|+.....+... |. .+.
T Consensus 125 ~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 67888998888 44564 788998999999999999999999998 333 3556777776665543 22 356
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAAS----GRWEDAAKVRISAKT 643 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~eA~~~~~~m~~ 643 (881)
.+.+..+++..+|.|...|..+..++... ++..+|.+.+.+..+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 78888899999999999999999999883 455678877776544
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.81 E-value=0.13 Score=59.71 Aligned_cols=159 Identities=11% Similarity=0.007 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 481 WNSMISGYGMNGLGE---NALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 481 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
-+.|++.+.+.++.. +|+-+++.-.... +.|..+-..+|+.|+-.|-...|..+|+.+--+ .+..|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHH
Confidence 455666666665543 3444444444332 334445555666666667777777776666422 4444433222 223
Q ss_pred HHHHcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCCH
Q 002790 558 LLGRAGLLQEASDIVKNMP-M-EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLI----TETTGSYMLLSNIYAASGRW 631 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m~-~-~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~ 631 (881)
.+...|++..+...++..- . ..+..----.|....+.|.+.+..++..--..+. ..-..+=+......+..++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 3344455555554444320 0 0000001112222334555555444433222221 11122334566677777888
Q ss_pred HHHHHHHHHHH
Q 002790 632 EDAAKVRISAK 642 (881)
Q Consensus 632 ~eA~~~~~~m~ 642 (881)
++-...+..|+
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 88887777776
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00039 Score=75.75 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=88.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMH 594 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~ 594 (881)
.+++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34444455556666666666666632 243 3334566666666666676666665 2223 455556566668899
Q ss_pred CCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 595 KNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 595 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998775
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00066 Score=73.99 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
....+|+..+...++++.|..+|+++.+.+......++..+...++-.+|++++++.+... +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445567777788899999999999988777777778888888888889999999988652 335555666666788899
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 002790 528 LVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMPMEP 579 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~~~p 579 (881)
+++.|..+.+++. ...|+ ..+|..|..+|.+.|++++|+-.++.++.-|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999998 56787 6789999999999999999999999887554
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0033 Score=62.60 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=59.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 002790 519 VLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKN 596 (881)
Q Consensus 519 ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~ 596 (881)
.+....+.|++.+|...+.+... .-.+|...|+.+.-+|-+.|++++|..-|.+. ...| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444445555555555554441 11223445555555555555555555444443 2222 23344555555555555
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHH
Q 002790 597 TDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 637 (881)
.+.|+.++.......+.+..+-..|..+....|++++|.++
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555566666666666665544
No 136
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.76 E-value=0.0028 Score=63.07 Aligned_cols=153 Identities=10% Similarity=0.153 Sum_probs=107.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGR 533 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 533 (881)
+-.|.+.|+++.+....+.+..+. ..+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346666777666544443332221 01223556677777777777653 556667888888888888888888
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 534 RIFDMMVREFRIEPQ-MEHYACMVDLL-GRAGL--LQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 534 ~l~~~m~~~~~~~p~-~~~~~~li~~~-~~~g~--~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
..|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887 45564 67777777764 66676 48888888887 4445 4567777888899999999999999999
Q ss_pred hhcCCCCcchH
Q 002790 608 FGLITETTGSY 618 (881)
Q Consensus 608 ~~~~p~~~~~~ 618 (881)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99988876544
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.73 E-value=4.5e-05 Score=51.86 Aligned_cols=33 Identities=45% Similarity=0.766 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPD 512 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 512 (881)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999999888887
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.71 E-value=5.4e-05 Score=51.46 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDG 132 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 132 (881)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.71 E-value=0.016 Score=69.11 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHH
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHV 438 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~ 438 (881)
.++..+..+|-+.|+.++|...|+++.+.. +-|....+.+...++.. +++.|.+++..+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 355566666666666666666666666554 22333444444444444 444444444433
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0055 Score=61.02 Aligned_cols=243 Identities=9% Similarity=-0.014 Sum_probs=145.5
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 002790 384 IGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCL 463 (881)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 463 (881)
++-+.-.|.+..++..-...... +-+...-..+-+++...|..... ...+.. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccc-ccCChHHHHHHHHHHhhCcchh
Confidence 45566677777776655544332 12223333333444444443221 112222 2233333333333333334443
Q ss_pred HHH-HHHHHhcccC---CHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 002790 464 EEG-HLVFEQIEKK---DLITWNS-MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 464 ~~A-~~~~~~m~~~---d~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
++- .++.+.+..+ +..++.. -...|+..|++++|++...... +......=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233333332 2222322 2345777889999998877622 222223333445677788999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHH----HHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 539 MVREFRIEPQMEHYACMVDLL----GRAGLLQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 539 m~~~~~~~p~~~~~~~li~~~----~~~g~~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
|. .+.- ..+.+.|..++ ...+.+.+|.-+|++|. ..|+..+.+....++...+++++|+.+++.++...+
T Consensus 163 mq---~ide-d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQ---QIDE-DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HH---ccch-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 97 3333 34555455544 44567899999999993 568888888888899999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHH-HHHHHH
Q 002790 613 ETTGSYMLLSNIYAASGRWEDAAK-VRISAK 642 (881)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~eA~~-~~~~m~ 642 (881)
.++.+...++-.-...|+-.++.+ .+..++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999888888888888766654 334333
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.032 Score=55.34 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=127.4
Q ss_pred CCChhHHHHHHHHhHH---cC-CCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch
Q 002790 215 NFDCDGALELFKRMEL---EG-LEPNFVT-WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH 289 (881)
Q Consensus 215 ~g~~~~A~~l~~~m~~---~g-~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 289 (881)
..++++.++++.+|.. .| ..|+..+ |..++-+....|+.+.|..+++++..+- |
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p------------------- 83 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--P------------------- 83 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--C-------------------
Confidence 4567777777777653 23 4566654 6667777777788888888877776652 2
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 290 MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 290 ~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
.+..+...-.-.+-..|++++|.++++.+.+. |.+++---+...-..|+.-+|++.+....+
T Consensus 84 ---------------~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 84 ---------------GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred ---------------CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22222222222344578899999999998863 446677777777778888899998888887
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh-HHHHHHHHH---hhhchHHHHHHHHHHHHHcC
Q 002790 367 LDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV-TISGLLSVC---AESAALNIGREIHGHVVRVS 442 (881)
Q Consensus 367 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g 442 (881)
.- ..|...|.-+...|...|++++|.-.++++.-. .|... .+..+-..+ .-..+...+++++...++..
T Consensus 149 ~F-----~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 149 KF-----MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred Hh-----cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65 678899999999999999999999999999865 45433 333333332 22345666777777777653
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.65 E-value=0.0011 Score=61.46 Aligned_cols=112 Identities=11% Similarity=0.137 Sum_probs=81.7
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 002790 500 TFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-P 576 (881)
Q Consensus 500 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~ 576 (881)
.|++..+. .|+. .....+...+...|++++|.+.++.+.. ..| +...+..+...+.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555543 4433 3455666677788888888888888773 234 4677788888888888888888888776 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcc
Q 002790 577 MEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTG 616 (881)
Q Consensus 577 ~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 616 (881)
..| +...+..+...+...|++++|...++++.+..|.+..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 344 4567777777888899999999999999998887764
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0019 Score=60.88 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCHHH
Q 002790 526 AGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP-MEPNA----YVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 526 ~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~-~~pd~----~~~~~Ll~~~~~~g~~~~ 599 (881)
.++.+.+...++.+.++++-.|- ....-.+...+...|++++|...|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555543221111 1223334455566666666666666551 11232 233445555667777777
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
|+..++.. ...+..+..+..++++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 223344566778888888888888888887753
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.60 E-value=9.6e-05 Score=49.90 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGVLG 130 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 130 (881)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.59 E-value=0.00011 Score=49.67 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKP 511 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 511 (881)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.54 E-value=0.00083 Score=57.00 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 002790 552 YACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (881)
+..+...+...|++++|.+.+++. ...|+ ...+..+...+...+++++|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 33333 3567777777888899999999999999888888888899999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 002790 630 RWEDAAKVRISAKTK 644 (881)
Q Consensus 630 ~~~eA~~~~~~m~~~ 644 (881)
++++|.+.+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998877653
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.46 E-value=0.00018 Score=60.51 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 002790 563 GLLQEASDIVKNM-PMEP---NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVR 638 (881)
Q Consensus 563 g~~~eA~~l~~~m-~~~p---d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 638 (881)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+..|.+......++.+|.+.|++++|++.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444455444444 1112 233444456666666666666666666 5555666666667788888888888888877
Q ss_pred HH
Q 002790 639 IS 640 (881)
Q Consensus 639 ~~ 640 (881)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.43 E-value=0.0016 Score=58.65 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---cchHHHHH
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITET---TGSYMLLS 622 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 622 (881)
++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+.+.|+++.|...++.+....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555555666565555555 11222 2344555666667777777777777776665553 34566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 002790 623 NIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 623 ~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777766654
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.39 E-value=0.0086 Score=56.34 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhHHHH
Q 002790 481 WNSMISGYGMNGLGENALATFEEMIEAGFKPDG----VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEHYAC 554 (881)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~~~~ 554 (881)
|..++..+ ..++...+.+.++++.... |+. .....+...+...|++++|...|+..... ...|+ ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 3667777777777777753 222 23333445677778888888888887743 22222 223445
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 555 MVDLLGRAGLLQEASDIVKNMPME-PNAYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
|...+...|++++|+..++..... .....+......+...|++++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777888888888888775322 23345555666688888888888888765
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0074 Score=63.64 Aligned_cols=267 Identities=12% Similarity=0.040 Sum_probs=152.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHhh
Q 002790 346 TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN-SVTISGLLSVCAE 424 (881)
Q Consensus 346 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~ 424 (881)
..+.+...+.+|+..+...++.. +.+..-|..-...+...|++++|+--.++-.+. +|. .......-+++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-----pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-----PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-----ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 34555666667777777766644 334455666666666677777766555444322 221 1122222333333
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----cCCHHHHHHHH-HHHHHcCChHHHH
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE-----KKDLITWNSMI-SGYGMNGLGENAL 498 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~~d~~~~~~li-~~~~~~g~~~~A~ 498 (881)
.++..+|.+.++ +...+ ....|...++.+. +|...+|..+- .++...|++++|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444333 00000 0111111111111 12223343332 2334456666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHhcCCCCChhH-------------HHHHHHHHHHcC
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSA--CSHAGLVNEGRRIFDMMVREFRIEPQMEH-------------YACMVDLLGRAG 563 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a--~~~~g~~~~A~~l~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g 563 (881)
..--..++.. ++ ..+..++++ +...++.+.|...|++.+ .+.|+... +..=.+-..+.|
T Consensus 190 ~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 190 SEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 6555554431 11 122223332 234456666666666665 44554221 111234467889
Q ss_pred CHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHH
Q 002790 564 LLQEASDIVKNM-PMEP-----NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 564 ~~~eA~~l~~~m-~~~p-----d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 637 (881)
++.+|.+.+.+. .+.| +...|........+.|+.++|+.-++++.+++|.-...|..-+.++.-.++|++|.+-
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 4444 4556666667778999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCC
Q 002790 638 RISAKTKG 645 (881)
Q Consensus 638 ~~~m~~~g 645 (881)
+++..+..
T Consensus 344 ~~~a~q~~ 351 (486)
T KOG0550|consen 344 YEKAMQLE 351 (486)
T ss_pred HHHHHhhc
Confidence 99877653
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00057 Score=54.97 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 002790 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG-RWEDAAKVRISAKT 643 (881)
Q Consensus 580 d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~m~~ 643 (881)
+..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999998765
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.34 E-value=0.0037 Score=56.28 Aligned_cols=104 Identities=11% Similarity=0.073 Sum_probs=58.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 002790 516 FVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLN 589 (881)
Q Consensus 516 ~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~ 589 (881)
+..+...+.+.|++++|...|+.+.+...-.|. ...+..+...+.+.|++++|.+.+++. ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555532111111 234444555566666666666666554 22222 345666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCcchHH
Q 002790 590 SCRMHKNTDVAEAMASQIFGLITETTGSYM 619 (881)
Q Consensus 590 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 619 (881)
.+...|+.++|...++++++..|++.....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 677778888888888888877777665443
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.29 E-value=0.62 Score=54.48 Aligned_cols=211 Identities=15% Similarity=0.069 Sum_probs=137.5
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLG 127 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 127 (881)
..+-..+.+.+-.+...++.+|+ +.+.|+.++|..+++......+.|..+...+-.+|.+.+..++|..+|++..+.
T Consensus 30 ~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~- 106 (932)
T KOG2053|consen 30 AKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK- 106 (932)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-
Confidence 33444444444444444444443 357799999999998876644458889999999999999999999999998865
Q ss_pred CCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhhc
Q 002790 128 VLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQ----------MSDSFKLFDKV 197 (881)
Q Consensus 128 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~----------~~~A~~l~~~m 197 (881)
-|+..-...+..++.+.+++.+- +++--++-+ .++-+.+.+-++++.+...-. ..-|.+.++.+
T Consensus 107 -~P~eell~~lFmayvR~~~yk~q----Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 107 -YPSEELLYHLFMAYVREKSYKKQ----QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 56777778888899888887766 333333323 356677777788887765421 22355555555
Q ss_pred CCCC-e-eh---HHHHHHHHHhCCChhHHHHHHH-HhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 198 RVKN-Y-IS---WNMMFSGFALNFDCDGALELFK-RMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 198 ~~~~-~-~~---y~~li~~~~~~g~~~~A~~l~~-~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
.+.+ . .+ .-.....+...|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++..+|
T Consensus 181 l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 181 LEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred hccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4333 1 11 1112233446778888888883 33333223333444556677788888888888888888776
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.17 Score=54.02 Aligned_cols=110 Identities=11% Similarity=0.190 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002790 514 VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRM 593 (881)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~ 593 (881)
.+.+..+.-|...|....|.++-.+. ++ |+...|...+.+|+..|++++-.++.+. +-.+.-|..++..|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35666677788888888877776544 44 8888999999999999999988887654 2245788889999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRIS 640 (881)
Q Consensus 594 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 640 (881)
.|+..+|..+..+ ..+..-+.+|.+.|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888777 2335678889999999999887443
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.23 E-value=0.00036 Score=45.82 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHcC
Q 002790 204 SWNMMFSGFALNFDCDGALELFKRMELEG 232 (881)
Q Consensus 204 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g 232 (881)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.21 E-value=0.0049 Score=67.51 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=46.4
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTD 598 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~ 598 (881)
.+...|++++|+..|++++ ...|+ ...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666555 23343 344444455555555555555555444 2222 2334444444455555555
Q ss_pred HHHHHHHHHhhcCCCCcchHH
Q 002790 599 VAEAMASQIFGLITETTGSYM 619 (881)
Q Consensus 599 ~A~~~~~~~~~~~p~~~~~~~ 619 (881)
+|+..+++++++.|.++....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555555444333
No 157
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.21 E-value=0.0036 Score=65.60 Aligned_cols=129 Identities=13% Similarity=0.022 Sum_probs=96.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH---HHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCC-CCHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMM---VREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-------PME-PNAY 582 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m---~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-------~~~-pd~~ 582 (881)
.|..|...|.-.|+++.|+...+.- .+++|-... ...+..+.+++.-.|+++.|.+.|+.. +.+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666678899998776642 234454433 567888999999999999999998764 211 3345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGL------ITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+..+|.+.|.-..++++|+.++.+-+.+ .......++.|+++|...|..++|+.+....++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6678888888888999999998875543 233567899999999999999999998776654
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.20 E-value=0.00042 Score=45.53 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGV 128 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 128 (881)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.20 E-value=0.47 Score=51.20 Aligned_cols=189 Identities=11% Similarity=0.073 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCHH-------HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIE--KKDLI-------TWNSMISGYGM----NGLGENALATFEEMIEAGFKPDGV 514 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~d~~-------~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ 514 (881)
.++..++....+.++...|.+.+.-+. +|+.. +-..+-+..+. .-+..+-+.+|++.....+.-..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ- 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ- 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-
Confidence 455566666667777777766666543 22111 11112222221 12334455666666655322211
Q ss_pred HHHHHHH---HHHccCC-HHHHHHHHHHHHHhcCCCCC-hhHHHHHH----HHHHHc---CCHH---HHHHHHHhCCCCC
Q 002790 515 AFVAVLS---ACSHAGL-VNEGRRIFDMMVREFRIEPQ-MEHYACMV----DLLGRA---GLLQ---EASDIVKNMPMEP 579 (881)
Q Consensus 515 t~~~ll~---a~~~~g~-~~~A~~l~~~m~~~~~~~p~-~~~~~~li----~~~~~~---g~~~---eA~~l~~~m~~~p 579 (881)
-...++. -+-+.|. -+.|+++++.+. .+.|. ...-|.+. ..|..+ ..+. +-.+.+++.++.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1222222 2445555 778888888887 33443 33333222 122211 1122 2233445555554
Q ss_pred ----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 580 ----NAYVWGTLLNS--CRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 580 ----d~~~~~~Ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
+...-|.|..+ +..+|++.++.-...=+.+..| ++.+|..++-.+....+++||.+++.++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34477788887 5789999999877776677777 8999999999999999999999998844
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.19 E-value=0.0012 Score=52.42 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=50.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 587 Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999988754
No 161
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.14 E-value=0.0039 Score=68.38 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=94.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhcCC-C-----CeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHH
Q 002790 168 QGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV-K-----NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWT 241 (881)
Q Consensus 168 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-~-----~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 241 (881)
+.+......+++......+++.+..++-+... + -..+..++|+.|.+.|..++++.+++.=...|+-||..|+|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555556666666666777778877776653 1 12355689999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 002790 242 SLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADL 285 (881)
Q Consensus 242 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 285 (881)
.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999888888888887777776554
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.14 E-value=0.005 Score=59.91 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 550 EHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 550 ~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
..+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|+..++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44556666666667777777766655 22222 35677777778888999999999999988888888888888888
Q ss_pred HHHcCC
Q 002790 625 YAASGR 630 (881)
Q Consensus 625 ~~~~g~ 630 (881)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.0047 Score=59.86 Aligned_cols=93 Identities=14% Similarity=-0.088 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666677777778888888877766 22222 3478888888999999999999999999999998888888888
Q ss_pred HHH-------HcCCHHHHHHHHHHH
Q 002790 624 IYA-------ASGRWEDAAKVRISA 641 (881)
Q Consensus 624 ~~~-------~~g~~~eA~~~~~~m 641 (881)
+|. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888777766654
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.09 E-value=0.0065 Score=56.75 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=81.8
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHH
Q 002790 544 RIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620 (881)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 620 (881)
|+.++ .........-+...|++++|..+|+-+. ..-+...|..|..+|...+++++|+..|..+..+.+.||..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55544 2333344555678899999999998762 22356678888888999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 002790 621 LSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 621 l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+..|...|+.++|...|....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999997766
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.21 Score=52.81 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-----
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGF-----KPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ----- 548 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~----- 548 (881)
++..+...+.+.|++++|.++|++....-. +.+.. .|...+-++...|++..|.+.+++.. ...|.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~---~~~~~F~~s~ 233 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC---SQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG---TTSTTSTTSH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcH
Confidence 455667778888999999999998876432 22222 23333445667788889998888876 33442
Q ss_pred -hhHHHHHHHHHH--HcCCHHHHHHHHHhCC
Q 002790 549 -MEHYACMVDLLG--RAGLLQEASDIVKNMP 576 (881)
Q Consensus 549 -~~~~~~li~~~~--~~g~~~eA~~l~~~m~ 576 (881)
......|++++- ....+++|+.-|+.+.
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233445555553 2345667777777663
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.005 Score=62.59 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=68.2
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-YVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~ 599 (881)
..+.+++++|+..|.+.+ .+.|. ++.|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445667777777777776 45654 555566667777777777777666554 555543 478888888888888888
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
|++.|+++++++|.+......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888887444444433
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.03 E-value=0.69 Score=50.02 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=81.2
Q ss_pred HHHhcCC-HHHHHHHHHhccc---CCHHHHHHHHH----HHHHc---CChHHHHHHHHHHHHcCCCCCHHHH----HHHH
Q 002790 456 MYMKCGC-LEEGHLVFEQIEK---KDLITWNSMIS----GYGMN---GLGENALATFEEMIEAGFKPDGVAF----VAVL 520 (881)
Q Consensus 456 ~y~~~g~-~~~A~~~~~~m~~---~d~~~~~~li~----~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t~----~~ll 520 (881)
-+-+.|. -++|..+++.+.+ -|..+-|.+.. .|.+. ....+-+.+-+-..+.|+.|-.+.= +.|.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 3444555 7778888887764 35555554332 22221 2234444444455567877765432 3333
Q ss_pred HH--HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002790 521 SA--CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGT 586 (881)
Q Consensus 521 ~a--~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~ 586 (881)
.| +...|++.++.-.-..+. .+.|++.+|..+.-++....+++||.+++..++ |+..++++
T Consensus 468 DAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 32 346788888877766666 678999999999999999999999999999885 45555544
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.99 E-value=0.01 Score=64.97 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=82.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcC
Q 002790 485 ISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAG 563 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g 563 (881)
...+...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++++. .+.|+ ...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHhC
Confidence 455667899999999999999874 3456688888889999999999999999998 45665 778888999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 002790 564 LLQEASDIVKNM-PMEPNAYVWGTLLNSC 591 (881)
Q Consensus 564 ~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~ 591 (881)
++++|+..|++. ...|+.......+..|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999887 5666655554444443
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.98 E-value=0.026 Score=64.59 Aligned_cols=137 Identities=14% Similarity=0.026 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcc--------CCHHHHHHHHHHHHHh
Q 002790 477 DLITWNSMISGYGMN-----GLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHA--------GLVNEGRRIFDMMVRE 542 (881)
Q Consensus 477 d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~A~~l~~~m~~~ 542 (881)
|...|...+++.... +...+|..+|++.++. .|+.. .+..+..++... .++..+.+..++....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 556666666654332 2255777777777775 55543 333332222111 0111222222221100
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 543 FRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 543 ~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
.....++..|.++.-.+...|++++|...+++. ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 001112334444433333444444444444444 3334444444444444444444444444444444444443
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.95 E-value=0.0091 Score=50.37 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 482 NSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 482 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555432 1222344444444455555555555555444
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.91 E-value=0.0083 Score=51.79 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=56.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHcCC-CCCHhHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002790 207 MMFSGFALNFDCDGALELFKRMELEGL-EPNFVTWTSLLSSHARCG--------RLEETMDLFDMMRKRGIEVGAEAIAV 277 (881)
Q Consensus 207 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~ty~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~~~ 277 (881)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445555566888888888888888888 788888888887776543 24456777888888788888877777
Q ss_pred HHHHHh
Q 002790 278 VLSVCA 283 (881)
Q Consensus 278 ll~~~~ 283 (881)
++....
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 776553
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.1 Score=57.98 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=55.5
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHH--HHHHhcC
Q 002790 234 EPNFVTWTSLLSSHARCGRLEETMDL---------FDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIH--GFVIKGG 302 (881)
Q Consensus 234 ~pd~~ty~~li~~~~~~g~~~~A~~l---------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~--~~~~~~g 302 (881)
.|....+.+-+..|...|.+++|.++ ++.+... ..+.-.+++.-.+|.+.++...-+.+. +.+.+.|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34455566666667777777776554 1222111 123334555556777777766555543 4456667
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 002790 303 FEDYVFVKNALICVYGKHGDVKVAQNLFSEI 333 (881)
Q Consensus 303 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m 333 (881)
-.|+... +...++-.|++.+|-++|.+-
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 6666543 345566678888888887763
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.86 E-value=0.031 Score=63.99 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=100.0
Q ss_pred cCCCCCHHHHHHHHHHHHcc--C---CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHc--------CCHHHHHHHH
Q 002790 507 AGFKPDGVAFVAVLSACSHA--G---LVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRA--------GLLQEASDIV 572 (881)
Q Consensus 507 ~g~~pd~~t~~~ll~a~~~~--g---~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~l~ 572 (881)
.+.+.|...|...+++.... + ..+.|..+|++.. ...|+ ...|..+..++... ++++.+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34567778888888875543 2 3778999999998 56888 55566555444332 1234445555
Q ss_pred HhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 573 KNM----PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 573 ~~m----~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
++. ....+...|..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 443 1233556777776667778999999999999999998 57899999999999999999999999887643
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.84 E-value=0.015 Score=50.25 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=46.0
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCC-CCchhHHHHHHHHHhhhc--------hHHHHHHHHHHHHHcCCCCchhHHHHH
Q 002790 383 VIGAFASNGRGEEALDLFRKMQLAKV-VANSVTISGLLSVCAESA--------ALNIGREIHGHVVRVSMNKNILVQNGL 453 (881)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~g~~~~~~~~~~L 453 (881)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 666666666666655432 344455666666666666666666666
Q ss_pred HHHHHh
Q 002790 454 LNMYMK 459 (881)
Q Consensus 454 i~~y~~ 459 (881)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.83 E-value=0.0035 Score=52.66 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=42.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHH
Q 002790 491 NGLGENALATFEEMIEAGFK-PDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEA 568 (881)
Q Consensus 491 ~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 568 (881)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|. ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666677777766665321 1333444456666666666666666665 2 22232 23333445666666666666
Q ss_pred HHHHHh
Q 002790 569 SDIVKN 574 (881)
Q Consensus 569 ~~l~~~ 574 (881)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.83 E-value=0.035 Score=53.92 Aligned_cols=129 Identities=13% Similarity=0.152 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPD--GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYA 553 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~ 553 (881)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.. ...|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHH
Confidence 445677777778888888888888888876543332 3467777788888888888888888887 33454 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 002790 554 CMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629 (881)
Q Consensus 554 ~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (881)
.+...|...|+...+..-++.. ...+++|.+.++++.+..|++ |..++.-+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 6777777777766555433321 113677888888888888776 444444444333
No 177
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=1.4 Score=50.55 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 002790 508 GFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTL 587 (881)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~L 587 (881)
|..-...+.+-.+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.++. +.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhH
Confidence 334445567777778888999999999888775 68888888889999999999999888887752 4667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 588 LNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 588 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
..+|.+.|+.++|.++.-+.-.+ .-...+|.+.|++.+|.+.--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 89999999999999887764322 157889999999999988744
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.81 E-value=0.0019 Score=51.64 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=45.9
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
...|++++|+..++++.+..|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998865543
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.012 Score=59.87 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCH
Q 002790 487 GYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLL 565 (881)
Q Consensus 487 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 565 (881)
-+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 3566788899999999988863 4456677777888999999999988888877 56776 67889999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHH
Q 002790 566 QEASDIVKNM-PMEPNAYVWGTLLNS 590 (881)
Q Consensus 566 ~eA~~l~~~m-~~~pd~~~~~~Ll~~ 590 (881)
++|++.|++. .+.|+..+|-.=+..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999998887 788888776544433
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.78 E-value=0.0075 Score=58.70 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=37.9
Q ss_pred CCCeehHHHHHHHHH-----hCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHh
Q 002790 199 VKNYISWNMMFSGFA-----LNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHAR 249 (881)
Q Consensus 199 ~~~~~~y~~li~~~~-----~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~ 249 (881)
.++-.+|..++..|. +.|..+=....++.|.+.|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 345555666666555 456777788888889999999999999999987754
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.77 E-value=0.4 Score=50.72 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=75.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcc
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMN-GLGENALATFEEMIEA----GFKPD--GVAFVAVLSACSHA 526 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~pd--~~t~~~ll~a~~~~ 526 (881)
++.|...|++..|-+++.. +...|... |++++|++.|++..+. | .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4566677777766555444 34455555 6777777777766542 2 111 22556666778888
Q ss_pred CCHHHHHHHHHHHHHhcCC----CCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---C---HHHHHHHHHHHHH-
Q 002790 527 GLVNEGRRIFDMMVREFRI----EPQM-EHYACMVDLLGRAGLLQEASDIVKNM-PMEP---N---AYVWGTLLNSCRM- 593 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~----~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p---d---~~~~~~Ll~~~~~- 593 (881)
|++++|.++|++.....-- ..+. ..|-..+-++...|+...|.+.+++. ...| + ......|+.+|..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 8888888888887643211 1111 12333344566677888887777765 2222 1 2244455555533
Q ss_pred -cCCHHHHHHHHHHHhh
Q 002790 594 -HKNTDVAEAMASQIFG 609 (881)
Q Consensus 594 -~g~~~~A~~~~~~~~~ 609 (881)
...++.+..-|+.+..
T Consensus 249 D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISR 265 (282)
T ss_dssp -CCCHHHHCHHHTTSS-
T ss_pred CHHHHHHHHHHHcccCc
Confidence 2344444444444333
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.014 Score=59.83 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=83.5
Q ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhcCCCCcchHH
Q 002790 546 EP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCR---MHKNTDVAEAMASQIFGLITETTGSYM 619 (881)
Q Consensus 546 ~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~ 619 (881)
.| |...|..|...|.+.|+++.|..-|.+. .+.| ++..+..+..++. ...+..++..++++++..+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 4788999999999999999999988887 4443 4456666666532 344678999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 620 LLSNIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 620 ~l~~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
.|+..+...|++.+|...|+.|.+..-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998753
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.75 E-value=0.05 Score=57.42 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA-CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 356677777777777888888888887442 2233334433333 333566777888888888654 345677888888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 558 LLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 888888988998888877 22233 34899999999999999999999999999887743
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.74 E-value=0.0046 Score=50.22 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 588 LNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 588 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...+...+++++|.+.++++++.+|.++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999888654
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.64 E-value=0.008 Score=47.52 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 555 MVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345566677777777777666 33453 45777777778888888888888888888887764
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.59 E-value=0.02 Score=62.99 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=86.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC-CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh
Q 002790 304 EDYVFVKNALICVYGKHGDVKVAQNLFSEIEE-KN-----IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV 377 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~ 377 (881)
+-+......+++......+++.+..++.+... |+ ..|..++|+.|.+.|..++++.+++.=...|+ -||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi----F~D~ 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI----FPDN 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc----CCCh
Confidence 33444455556666666667777777766653 21 23455788888888888888888887777774 8888
Q ss_pred hhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhh
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAES 425 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 425 (881)
.++|.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888877777777777777776654
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=1.4 Score=47.23 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 002790 450 QNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLV 529 (881)
Q Consensus 450 ~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (881)
.+..|.-+...|+...|.++-.+..-||-.-|-..+.+++..+++++-.++-.. . -.++-|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCH
Confidence 344455667778888888888888888888888888999988888877665332 2 2337788888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSC 591 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~ 591 (881)
.+|..+..++. +..-+..|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 88888776532 2445677888888888877655543 444444444333
No 188
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.57 E-value=0.046 Score=50.95 Aligned_cols=84 Identities=8% Similarity=-0.117 Sum_probs=36.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCC
Q 002790 486 SGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGL 564 (881)
Q Consensus 486 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (881)
..+...|++++|..+|+-..... +-+..-|..|..+|-..|++++|+..|.... .+.|| +..+-.+..++...|+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHcCC
Confidence 33344455555555555444431 1122233334444444455555555555444 23333 3444444444444444
Q ss_pred HHHHHHHHH
Q 002790 565 LQEASDIVK 573 (881)
Q Consensus 565 ~~eA~~l~~ 573 (881)
.++|.+.|+
T Consensus 119 ~~~A~~aF~ 127 (157)
T PRK15363 119 VCYAIKALK 127 (157)
T ss_pred HHHHHHHHH
Confidence 444444443
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.49 E-value=0.61 Score=48.00 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh-hh---HHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 344 LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV-IS---WSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 344 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~-~~---y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
....+.+.|++++|.+.|+++.... |+. .. .-.+..+|.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455666677777776666643 221 11 123446666777777777777776654
No 190
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.46 E-value=1.7 Score=46.90 Aligned_cols=95 Identities=6% Similarity=0.060 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLG 127 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 127 (881)
.++.+++.+. +.|...|-.||+-|..+|..++.+++++++.+-.|-=..+|..-+++-....++..+..+|-+-....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3444444332 35677999999999999999999999999988444456689999998888899999999998877654
Q ss_pred CCCCcchHHHHHHHHHccC
Q 002790 128 VLGDGFTFPLVIRACKFMG 146 (881)
Q Consensus 128 ~~p~~~t~~~ll~a~~~~~ 146 (881)
.. ...|..-+.-..+..
T Consensus 107 l~--ldLW~lYl~YIRr~n 123 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVN 123 (660)
T ss_pred cc--HhHHHHHHHHHHhhC
Confidence 43 444554554444433
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.46 E-value=0.29 Score=50.36 Aligned_cols=193 Identities=8% Similarity=-0.045 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHH
Q 002790 62 SAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLW---NSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLV 138 (881)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 138 (881)
++...-.....+.+.|++++|.+.|+.+....|-+...- -.+..++.+.+++++|...+++..+.........|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333333445555678999999999998876444444433 34667888999999999999999886433233345445
Q ss_pred HHHHHccCCcccccchHHHHHHHHHHh-CCCCc-------hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHH
Q 002790 139 IRACKFMGSFRFRFSFGQIVHNHVLQM-GFQGN-------VHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFS 210 (881)
Q Consensus 139 l~a~~~~~~~~~a~~~~~~~~~~m~~~-g~~~~-------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~ 210 (881)
+.+.+.... . ...+...... ....| ...+..++.-|=...-..+|...+..+...=..---.+..
T Consensus 111 ~~g~~~~~~---~----~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 111 MRGLTNMAL---D----DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred HHHHhhhhc---c----hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544431000 0 0000000000 00000 0122333333333333444444333332111111113344
Q ss_pred HHHhCCChhHHHHHHHHhHHcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHH
Q 002790 211 GFALNFDCDGALELFKRMELEGLEPNF----VTWTSLLSSHARCGRLEETMDLFDMM 263 (881)
Q Consensus 211 ~~~~~g~~~~A~~l~~~m~~~g~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~m 263 (881)
.|.+.|.+..|..-|+.+.+. -|+. .....++.+|.+.|..++|.+....+
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 566777777777777777654 3332 23445666677777777666665544
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.37 E-value=0.054 Score=52.39 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPD--GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACM 555 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~l 555 (881)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|...+++..+ +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 4556666666667777777777777665422221 23566666666677777777777766662 2333 3344444
Q ss_pred HHHHH
Q 002790 556 VDLLG 560 (881)
Q Consensus 556 i~~~~ 560 (881)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.34 E-value=0.03 Score=54.63 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=75.6
Q ss_pred HHHHHhc--ccCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 002790 467 HLVFEQI--EKKDLITWNSMISGYGMN-----GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA------------- 526 (881)
Q Consensus 467 ~~~~~~m--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 526 (881)
...|+.. ..+|-.+|..+++.|.+. |..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 456777888888888754 66777778889999999999999999999887543
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 002790 527 ---GLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGL 564 (881)
Q Consensus 527 ---g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 564 (881)
.+-+-|++++++|. .+|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23456889999997 77999999999999998877664
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.34 E-value=0.22 Score=53.78 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-------CHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEKK-------DLITWNSMISGYGM---NGLGENALATFEEMIEAGFKPDGVAFVAVLS 521 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~~-------d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 521 (881)
.++-.|....+++.-.++.+.+... ....--...-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455677778888888888877653 11122223344455 6788888888888666556777777777766
Q ss_pred HHHcc---------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH----HHHH---Hh-C------CCC
Q 002790 522 ACSHA---------GLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEA----SDIV---KN-M------PME 578 (881)
Q Consensus 522 a~~~~---------g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA----~~l~---~~-m------~~~ 578 (881)
.|-.. ...++|...|.+.- .+.|+..+--.++-.+.-.|...+. .++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 65421 23667777776554 5556543333333344444432221 1211 00 0 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 579 PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 579 pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
.|-..+.+++.++.-.|+.+.|.+.++++....|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 44556667777777777777777777777777655
No 195
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.34 E-value=0.029 Score=59.17 Aligned_cols=129 Identities=11% Similarity=0.121 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 002790 514 VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGR-AGLLQEASDIVKNM--PMEPNAYVWGTLLNS 590 (881)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~l~~~m--~~~pd~~~~~~Ll~~ 590 (881)
.+|..++....+.+..+.|..+|.+..+.. ..+..+|......-.+ .++.+.|.++|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888999999999999999998332 2234556666665445 46666699999987 344567889999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 591 CRMHKNTDVAEAMASQIFGLITETT---GSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...++.+.|..+|++++...|.+. ..|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877655 58889999999999999999999988774
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.33 E-value=0.052 Score=48.67 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=55.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHH
Q 002790 556 VDLLGRAGLLQEASDIVKNM---PMEPN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE---TTGSYMLLSNIYAA 627 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m---~~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 627 (881)
..++-..|+.++|+.+|++. +.... ...+..+.+.++..|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34445555666666655544 11111 235556666777788888888888877777666 55566667777888
Q ss_pred cCCHHHHHHHHHHHH
Q 002790 628 SGRWEDAAKVRISAK 642 (881)
Q Consensus 628 ~g~~~eA~~~~~~m~ 642 (881)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888887765443
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.24 E-value=0.0079 Score=48.02 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=37.3
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 002790 524 SHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTL 587 (881)
Q Consensus 524 ~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~L 587 (881)
...|++++|.++|+++.+. .| +...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3567777777777777633 44 3556666677777777777777777766 344554444333
No 198
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=96.22 E-value=0.0051 Score=54.87 Aligned_cols=75 Identities=28% Similarity=0.427 Sum_probs=56.0
Q ss_pred cceeEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhccccchhHHHhhhhhhhhhhhhcCc
Q 002790 651 GQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVKRIQRIRADNIKSKHRIVGF 730 (881)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (881)
|++|++. |.|++|+..||+. ++..+|...|+.|++..+.++..++..... .-.++.....+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-------d~~~~~~~~~~ 62 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDY-------DEEEKEESLCY 62 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhc-------ccccchhhhhc
Confidence 5788876 9999999999986 466778889999999998876665422111 11245568899
Q ss_pred cchHHHHHHHhhhc
Q 002790 731 RNLKLGLRLLLSLR 744 (881)
Q Consensus 731 ~~~~~~~~~~~~~~ 744 (881)
|+|++|.++.+...
T Consensus 63 HSEKlAiafgli~~ 76 (116)
T PF14432_consen 63 HSEKLAIAFGLINT 76 (116)
T ss_pred cHHHHHHHhcccce
Confidence 99999999986543
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.19 E-value=0.0038 Score=41.93 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.3
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHH
Q 002790 604 ASQIFGLITETTGSYMLLSNIYAASGRWEDAA 635 (881)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 635 (881)
|+++++++|.++..|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.12 E-value=3.5 Score=46.99 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=82.3
Q ss_pred cCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 002790 184 MGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGL--EPNFVTWTSLLSSHARCGRLEETMDLFD 261 (881)
Q Consensus 184 ~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~ 261 (881)
.|++++|++++-.+..+|. .|..+.+.|++-...++++.=- .+. ..-...|+.+...+.....|++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888777654 2444455566655555553211 000 0112346666666666666666666664
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHH
Q 002790 262 MMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSW 341 (881)
Q Consensus 262 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 341 (881)
.-... ...+.++.+...++.-+.+. ..++.+....-.+.+++...|.-++|.+.|-+-..|.
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 43211 11122233322222222221 2245566666677778888888888777776655442
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 002790 342 NALITSYAEAGLCDEAVEVFSQ 363 (881)
Q Consensus 342 ~~li~~~~~~g~~~~A~~l~~~ 363 (881)
+.+..|...++|.+|.++-+.
T Consensus 883 -aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 234445555666666655443
No 201
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.12 E-value=0.37 Score=42.93 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=87.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 002790 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEA 568 (881)
Q Consensus 489 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 568 (881)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..+.++.+-+-+.+.|- .-...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3457778888888887764 24445555555444555556666677666433322221 112344555555443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 002790 569 SDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLK 647 (881)
Q Consensus 569 ~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~ 647 (881)
+......-+......|+-|.-.+++..+.+.+..+|....-++.+|.+.|+..++-++++++-++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455666777889999999999999998777778999999999999999999999999999999974
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.12 E-value=0.014 Score=46.70 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCC
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHK-NTDVAEAMASQIFGLIT 612 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g-~~~~A~~~~~~~~~~~p 612 (881)
+..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666666666666666666655 3334 3456777777777777 68888888888887776
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.12 E-value=0.68 Score=43.95 Aligned_cols=131 Identities=10% Similarity=0.063 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHhCC------CCCCH
Q 002790 509 FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIE-PQMEHYACMVDLLGRAGLLQEASDIVKNMP------MEPNA 581 (881)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~eA~~l~~~m~------~~pd~ 581 (881)
..|+...-..|..+....|+..+|...|++.. . |+- -|....-.+.++....+++.+|...+++.. ..||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-s-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-S-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-c-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 36777777778888888899999999888876 3 443 356677778888888889988888887762 2244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
....+...+...|.+.+|+..++.+...-|. +..-......+.++|+.++|..-+..+.+.
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3345667788899999999999999988765 456667788889999999888776665543
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.10 E-value=0.041 Score=57.10 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=47.4
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCH
Q 002790 560 GRAGLLQEASDIVKNM-PMEPNA----YVWGTLLNSCRMHKNTDVAEAMASQIFGLITET---TGSYMLLSNIYAASGRW 631 (881)
Q Consensus 560 ~~~g~~~eA~~l~~~m-~~~pd~----~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 631 (881)
.+.|++++|...|+.. ...|+. ..+.-+...+...|++++|...|+.+++..|.+ +..+..++.+|.+.|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3444555555444444 112221 244445555666666666666666666665553 34444556666677777
Q ss_pred HHHHHHHHHHHhC
Q 002790 632 EDAAKVRISAKTK 644 (881)
Q Consensus 632 ~eA~~~~~~m~~~ 644 (881)
++|.++++++.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.08 E-value=0.12 Score=46.32 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDG--VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLG 560 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~ 560 (881)
+..++-..|+.++|+.+|++..+.|..... ..+..+.+.+...|++++|..++++...++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345667789999999999999998876553 3677788888899999999999998885431111 1222333445677
Q ss_pred HcCCHHHHHHHHHh
Q 002790 561 RAGLLQEASDIVKN 574 (881)
Q Consensus 561 ~~g~~~eA~~l~~~ 574 (881)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877654
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.05 E-value=0.99 Score=42.89 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=49.9
Q ss_pred CCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHHHHHH
Q 002790 409 VANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK-----DLITWNS 483 (881)
Q Consensus 409 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----d~~~~~~ 483 (881)
.|+...-..+-.+....|+..+|...|++...--+-.|..+.-.+.++....+++..|...++++-+- ...+--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44444444555555555555555555555555444445555555555555555555555555544321 2223333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 002790 484 MISGYGMNGLGENALATFEEMIEA 507 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~ 507 (881)
+.+.+...|++.+|..-|+...+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 444555555555555555555543
No 207
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=2.5 Score=49.38 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=108.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHH----HHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 002790 65 LAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSIL----RVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIR 140 (881)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 140 (881)
....-|..+.+...++-|..+-..-.. +...-..+. +-+.+.|++++|...|-+-... +.| ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 344557777777888888888765543 233323333 3455689999999888776543 233 23444
Q ss_pred HHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCee--hHHHHHHHHHhCCCh
Q 002790 141 ACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYI--SWNMMFSGFALNFDC 218 (881)
Q Consensus 141 a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~--~y~~li~~~~~~g~~ 218 (881)
-+-....+..- -..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .+.. -....+..+-+.+-.
T Consensus 406 kfLdaq~IknL----t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNL----TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHH----HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChH
Confidence 44444444433 5666677777765 34445788899999999999888887776 3322 245556666666666
Q ss_pred hHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002790 219 DGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMR 264 (881)
Q Consensus 219 ~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 264 (881)
++|..+-..... .... +--.+-..+++++|++.++.|.
T Consensus 480 ~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 666666554431 2222 2223456678888888887664
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=4.4 Score=46.84 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGL 528 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (881)
+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+. + +.-|.-...+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhccc
Confidence 334444555666777777777777777777777777777777777766555544332 1 3456667777777777
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 529 VNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 529 ~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
.++|.+++-+.. |.. -.+.+|.+.|++.+|.++--
T Consensus 760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 777777766543 111 35666777777777766543
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.27 Score=52.38 Aligned_cols=267 Identities=13% Similarity=0.059 Sum_probs=145.3
Q ss_pred HHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCC
Q 002790 316 VYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGR 392 (881)
Q Consensus 316 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~ 392 (881)
.+-+..++..|+..+....+ | +..-|..-...+..-|++++|.--.++-.+.. +-....+.-.-+++...++
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-----d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-----DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC-----CCccccccchhhhhhhhHH
Confidence 44455556666666655443 2 34445555555666667776665555444322 1112233334444444555
Q ss_pred hHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCchhHHHHH-HHHHHhcCCHHHHHHHH
Q 002790 393 GEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM-NKNILVQNGL-LNMYMKCGCLEEGHLVF 470 (881)
Q Consensus 393 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~-~~~~~~~~~L-i~~y~~~g~~~~A~~~~ 470 (881)
..+|...++.-. .+ ....+...++.+..... +|.-..+..| ..++.-.|+.++|..+-
T Consensus 133 ~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 555555444110 00 00011111111111111 1222333322 34555667777777666
Q ss_pred HhcccCCH-HHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHH---HH----------HHHccCCHHHHHH
Q 002790 471 EQIEKKDL-ITWNSMISGYG--MNGLGENALATFEEMIEAGFKPDGVAFVAV---LS----------ACSHAGLVNEGRR 534 (881)
Q Consensus 471 ~~m~~~d~-~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~----------a~~~~g~~~~A~~ 534 (881)
-.+.+-|. ..+...+++.+ -.++.+.|...|++.+.. .|+...-... .. -..+.|++..|.+
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 55554432 23333444433 356677777777777664 4554422221 11 2346789999999
Q ss_pred HHHHHHHhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 002790 535 IFDMMVREFRIEPQ-----MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNS--CRMHKNTDVAEAMASQ 606 (881)
Q Consensus 535 l~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~--~~~~g~~~~A~~~~~~ 606 (881)
.|.+.+ ++.|+ ...|........+.|+..+|+.--++. .+. +..++.-+..+ +...+++++|.+.+++
T Consensus 271 ~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 66665 455777777788999999999887766 333 23344444444 5567899999999999
Q ss_pred HhhcCCC
Q 002790 607 IFGLITE 613 (881)
Q Consensus 607 ~~~~~p~ 613 (881)
+.+....
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 9887544
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.84 E-value=0.037 Score=60.29 Aligned_cols=63 Identities=17% Similarity=-0.100 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 581 AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTG---SYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 581 ~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
...|+.+..+|...|++++|+..|+++++++|.+.. +|+.++.+|.+.|+.++|++.++++.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555553 255555555556666665555555554
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.82 E-value=0.56 Score=52.49 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHHhhCCC--C------CCCCHhHHHHHHHHHHcCCC--hhHHHHHHHHHHhCCCC
Q 002790 60 NASAFLAARVLSIYARFGRLFDARNVFETAPF--D------CKSSSLLWNSILRVNVSNGL--YENALKLYVKMRKLGVL 129 (881)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~~n~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 129 (881)
.|.+..+.+-+..|...|.+++|.++----.. . ..-+.-.++..=.+|.+-.+ +-+-+.-+++|+++|-.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 34444455556667777888777654211000 0 00111223333344444333 22334445566666655
Q ss_pred CCcchHHHHHHHHHccCCcccc
Q 002790 130 GDGFTFPLVIRACKFMGSFRFR 151 (881)
Q Consensus 130 p~~~t~~~ll~a~~~~~~~~~a 151 (881)
|+... +...|+-.|++.+|
T Consensus 633 P~~iL---lA~~~Ay~gKF~EA 651 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEA 651 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHH
Confidence 65422 22335556666666
No 212
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.79 E-value=4.6 Score=45.65 Aligned_cols=412 Identities=12% Similarity=0.094 Sum_probs=213.4
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 203 ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVT-WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSV 281 (881)
Q Consensus 203 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 281 (881)
..|+.+|..--...+.+.+...+..+... .|-..- |.....-=.+.|..+.+.++|++-.+. ++.+...+...+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 44555555444444445555566655544 455443 333333445566666677777665542 33333333333332
Q ss_pred Hh-ccccchhHHHHHHHHHhc-CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHH---c----
Q 002790 282 CA-DLAADHMGKVIHGFVIKG-GF-EDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAE---A---- 351 (881)
Q Consensus 282 ~~-~~~~~~~a~~i~~~~~~~-g~-~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~---~---- 351 (881)
+. ..++.+..+..++..... |. -.....|...|..-..++++.....+++++.+-....++..-..|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 22 233444444444444332 21 12234556666666777888888888888877444444444333322 1
Q ss_pred --CChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH-CCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchH
Q 002790 352 --GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS-NGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAAL 428 (881)
Q Consensus 352 --g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 428 (881)
...+++.++-.............+....+..-+.--.. .+..+++.....+.. ..--..+......
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~ 271 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEE 271 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhH
Confidence 11222222222221100000000000011100000000 000111111000000 0000111111122
Q ss_pred HHHHHHHHHHHHcC---C----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHH
Q 002790 429 NIGREIHGHVVRVS---M----NKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENAL 498 (881)
Q Consensus 429 ~~a~~i~~~~~~~g---~----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 498 (881)
...+..++.-++.- + .++..+|+..++.-.+.|+.+.+.-.|+++.-| -...|--.+.-....|+.+-|.
T Consensus 272 ~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~ 351 (577)
T KOG1258|consen 272 EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLAN 351 (577)
T ss_pred HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHH
Confidence 22222333332221 1 234577888888889999999999999998765 2345655555555668888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHH---HHHH
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSA-CSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEAS---DIVK 573 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~---~l~~ 573 (881)
.++....+--++ +......+-.. +-..|+.+.|..+++.+..++ |+ ...-..-+....+.|..+.+. +++.
T Consensus 352 ~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 352 NVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred HHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 777666554322 22222222222 445689999999999998653 66 333344566778899999888 5555
Q ss_pred hC-CCCCCHHHHHH----HHHH-HHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHH
Q 002790 574 NM-PMEPNAYVWGT----LLNS-CRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWE 632 (881)
Q Consensus 574 ~m-~~~pd~~~~~~----Ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (881)
.. ..+-+...... ...- +.-.++.+.|..++.++.+..|++...|..+++.....+...
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 44 22222222222 2222 455789999999999999999999999999998887776443
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.77 E-value=0.019 Score=47.32 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc---CC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGL---IT----ETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+++.+...+...|++++|+..+++++++ .+ .-..++..++.+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666677777777777777776644 22 1245778888889999999999888887653
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.70 E-value=1.2 Score=44.58 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 344 LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 344 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
....+.+.|++++|...|+++......+ +--....-.++.++.+.|++++|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s--~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNS--PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777888888888877755311 111234455667778888888888888877664
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.59 E-value=0.24 Score=46.54 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+...++..+...|++++|..+++.++..+|-+...|..++.+|.+.|+..+|+++|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35666777788999999999999999999999999999999999999999999999988754
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.28 Score=50.48 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCCCHH-H
Q 002790 510 KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAG---LLQEASDIVKNM-PMEPNAY-V 583 (881)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g---~~~eA~~l~~~m-~~~pd~~-~ 583 (881)
+-|...|..|...|...|+.+.|...|.... .+.|+ +..+..+...+.... ...++.++|+++ ..+|+.. +
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4456678888888888888888888888777 34443 566666666654332 355777888877 5555554 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
..-|...+...|++.+|...++.+++..|++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 44455558899999999999999999887765
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.79 Score=45.92 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=72.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcC-----CCCchhHHHHHHH
Q 002790 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVS-----MNKNILVQNGLLN 455 (881)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g-----~~~~~~~~~~Li~ 455 (881)
+.++..+.-.|.+.-.+..+.+..+..-+.+......+.+.-.+.|+.+.+...++...+.. ......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33444444444455555555555544333444444455555555555555555555444321 2222222333334
Q ss_pred HHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002790 456 MYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAV 519 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 519 (881)
.|.-++++..|...|+++... |++.-|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 555667777777777777643 4444444333344467778888888888775 4555444433
No 218
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.51 E-value=0.16 Score=52.80 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=64.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ----MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWG 585 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~ 585 (881)
.|...+....+.|++++|...|+.+.+. .|+ ...+..+...|...|++++|...|+.+ ...|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3444443345557777777777777744 343 245566777777777777777777766 11222 33555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 586 TLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 586 ~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
.+...+...|+.+.|...++++++..|.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566667788999999999999988888765
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.15 Score=54.48 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 581 AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 581 ~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
..+++.|..++.+.+++..|++.++++++..|+|.-..+.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4577888888999999999999999999999999999999999999999999999999988774
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.06 E-value=4 Score=40.46 Aligned_cols=194 Identities=19% Similarity=0.133 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002790 447 ILVQNGLLNMYMKCGCLEEGHLVFEQIEK-----KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLS 521 (881)
Q Consensus 447 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 521 (881)
..........+...+.+..+...+..... .....+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45566666777777888877777766542 2445566666667777778888888888876543331 22222222
Q ss_pred -HHHccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 002790 522 -ACSHAGLVNEGRRIFDMMVREFRIEP----QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN--AYVWGTLLNSCRM 593 (881)
Q Consensus 522 -a~~~~g~~~~A~~l~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd--~~~~~~Ll~~~~~ 593 (881)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788889999988888752 333 2344445555577788899998888877 33333 5677778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 594 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++++.+...+.......|.....+..+...+...|.++++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999888876667777777777778889998888877654
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.02 E-value=1.4 Score=44.01 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=89.8
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHc
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEK--K----DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDG--VAFVAVLSACSH 525 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~--~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 525 (881)
...+...|++++|.+.|+.+.. | -....-.++.++-+.|++++|...+++.++. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3445566777777777777653 1 1234445666777777777787777777764 2332 122222222221
Q ss_pred -------------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 002790 526 -------------AGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVW--GTLLNS 590 (881)
Q Consensus 526 -------------~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~--~~Ll~~ 590 (881)
.+...+|...|+.+.+++ |+ .....+|...+..+. +...- ..+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~-------------S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRY---PN-------------SEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH----TT-------------STTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHC---cC-------------chHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 112344555555555332 33 223334433333321 11111 123455
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHcCCHHHHHH
Q 002790 591 CRMHKNTDVAEAMASQIFGLITETTG---SYMLLSNIYAASGRWEDAAK 636 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~eA~~ 636 (881)
|.+.|.+..|..-++.+++..|..+. ....++.+|.+.|..+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 88999999999999999999888653 56688899999999885543
No 222
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=3 Score=41.62 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC----CCChhHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI----EPQMEHYACM 555 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~----~p~~~~~~~l 555 (881)
.|+--...|..+|.++.|-..+++.-+. ...-++++|+++|++...-... .--...|...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3444556667777766666555554321 1223344555555544321100 1113345555
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCCcchHHHHHH
Q 002790 556 VDLLGRAGLLQEASDIVKNMP-------MEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGL----ITETTGSYMLLSN 623 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m~-------~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~ 623 (881)
...|.+..+++||-..+.+-. .-|+. ..+...|-.+....|+..|+..++..-+. .|++..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 667778888888777665542 11333 23455555566677899999999886554 5667778888888
Q ss_pred HHHHcCCHHHHHHHHH
Q 002790 624 IYAASGRWEDAAKVRI 639 (881)
Q Consensus 624 ~~~~~g~~~eA~~~~~ 639 (881)
+| ..|+.+++.++..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 87 6788888877654
No 223
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.90 E-value=2.3 Score=45.35 Aligned_cols=131 Identities=11% Similarity=0.000 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH---hcCC-CCChh
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMI----EAGFKP-DGVAFVAVLSACSHAGLVNEGRRIFDMMVR---EFRI-EPQME 550 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~---~~~~-~p~~~ 550 (881)
.|..|...|.-.|+++.|+...+.=+ +.|-+. ....+..+..++.-.|+++.|.+.|+.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666788888887654322 223221 223677788888888999999988876542 1111 12244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-------P-MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-------~-~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
...+|.+.|.-...+++|+.++.+- . .--...++-+|..++...|..++|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5667888888888899999888653 1 1123457778999999999999999988887654
No 224
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.89 E-value=0.048 Score=39.13 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
.+|..+...+...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999999988877764
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=1.9 Score=43.41 Aligned_cols=133 Identities=8% Similarity=-0.105 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHH-----HH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHY-----AC 554 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~-----~~ 554 (881)
.-+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|...|++..+..+ ..+-... ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34556666666777778888888888876666777778888888888999988888887764432 2222222 22
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 555 MVDLLGRAGLLQEASDIVKNMPME--PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~~~--pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
....|.-++++.+|...+.+.... .|+...|.-.-+..-.|+...|++..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 223344455566666666555322 12233333333333445566666666666665554
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.59 E-value=0.53 Score=49.24 Aligned_cols=163 Identities=10% Similarity=0.060 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC----hh
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIE-AGFKPD---GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ----ME 550 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~----~~ 550 (881)
..|..+.+++-+.-++.+++.+-+.-.. .|..|. .....++-.+....+.++++++.|+...+-..-.-| ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455556666555555566555444332 222231 112333445555566688888888877632211112 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCC--
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-------PMEPNA-----YVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITET-- 614 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-------~~~pd~-----~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~-- 614 (881)
+|..|...|.+..++++|.-+..+. +.+.-. .+...+.-+++..|....|.+.++++.++ ...|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6788888888888888776555443 322111 13334555688889999999999888765 3333
Q ss_pred --cchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 615 --TGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 615 --~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
......++++|...|+.|.|..-|+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 344557888999999888887777654
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.58 E-value=11 Score=43.19 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=20.1
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 002790 234 EPNFVTWTSLLSSHARCGRLEETMDLFDMM 263 (881)
Q Consensus 234 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 263 (881)
.|.+..|..+.....+.-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 567777877777666666666666666444
No 228
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.50 E-value=0.14 Score=41.34 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=37.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchH
Q 002790 558 LLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSY 618 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 618 (881)
.|.+.+++++|.++++.+ ...| +...|......+...|++++|...++++.+..|.++...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 455556666666666555 3333 334555566667777777777777777777777665443
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.48 E-value=0.41 Score=43.40 Aligned_cols=51 Identities=14% Similarity=0.315 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 002790 508 GFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDL 558 (881)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~ 558 (881)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777777777777777777777777777777777766666666666543
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.48 E-value=0.062 Score=44.14 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
++..+...+...|++++|++.++++.+
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666666666666665544
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.48 E-value=0.18 Score=47.31 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 002790 205 WNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK-----RGIEVGAEA 274 (881)
Q Consensus 205 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 274 (881)
...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566677888888888888887664 55667788888888888888888888887753 366666544
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.17 E-value=19 Score=44.22 Aligned_cols=127 Identities=16% Similarity=0.192 Sum_probs=66.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 002790 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA----CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGL 564 (881)
Q Consensus 489 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a----~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 564 (881)
-++|-+.+|+.++ +|+...+..+..+ |.....+++|--.|+..-+ ..--+.+|..+|+
T Consensus 919 ~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 919 KKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGD 980 (1265)
T ss_pred Hhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhcc
Confidence 3445555554443 4454444444433 3344555555555544320 0123455666777
Q ss_pred HHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Q 002790 565 LQEASDIVKNMPMEPNAYV--WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRIS 640 (881)
Q Consensus 565 ~~eA~~l~~~m~~~pd~~~--~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 640 (881)
+.+|+.+-.++...-|... -..|..-+...++.-+|-++..+..+. +.--...|+++..|++|+++-..
T Consensus 981 Wr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 981 WREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 7777777766644434332 255666677777666666665554331 22334456666777777776543
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.14 E-value=0.25 Score=49.84 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=77.7
Q ss_pred HHHHHhhcC--CCCeehHHHHHHHHHh-----CCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 002790 190 SFKLFDKVR--VKNYISWNMMFSGFAL-----NFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDM 262 (881)
Q Consensus 190 A~~l~~~m~--~~~~~~y~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 262 (881)
.++.|.... ++|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf---------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF---------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------
Confidence 344555555 5666777777776653 45677777888999999999999999999976654321
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHhhcc
Q 002790 263 MRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGD-VKVAQNLFSEIE 334 (881)
Q Consensus 263 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~~~~m~ 334 (881)
.|... |..++-.| -..-+-+..++++|..+|+.||..+-..|++++++.+- ..+..+++-.|+
T Consensus 123 ------iP~nv-fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 123 ------IPQNV-FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ------ccHHH-HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11111 11111111 12234456677777777777777777777777777665 334444444444
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.11 E-value=9.7 Score=40.72 Aligned_cols=245 Identities=19% Similarity=0.169 Sum_probs=158.5
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCch--hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 002790 386 AFASNGRGEEALDLFRKMQLAKVVANS--VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCL 463 (881)
Q Consensus 386 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 463 (881)
+-.-.|+++.|.+-|+.|... |.. --...|.-...+.|+.+.+.++-+..-..- +.-.-...+.+...|..|++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 344568888888888888642 221 122333334456788888887777665432 22345677888999999999
Q ss_pred HHHHHHHHhccc-----CCHH--HHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHH
Q 002790 464 EEGHLVFEQIEK-----KDLI--TWNSMISGYGM---NGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEG 532 (881)
Q Consensus 464 ~~A~~~~~~m~~-----~d~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A 532 (881)
+.|+++.+.-.. +++. .-..|+.+-+. .-+...|...-.+..+ +.||.+ .-..-..++.+.|++.++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 999999987543 3332 22333333222 2344555555444443 577765 344456678899999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 533 RRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM----PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
-.+++.+- ...|.+.++...+ +.+.|+. +++-+++. ..+|| ..+...+..+....|++..|..-.+.+
T Consensus 283 ~~ilE~aW---K~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAW---KAEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHH---hcCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999988 3466665554333 3455543 32222222 34454 456677778888999999999988888
Q ss_pred hhcCCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 002790 608 FGLITETTGSYMLLSNIYAAS-GRWEDAAKVRISAKTK 644 (881)
Q Consensus 608 ~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~m~~~ 644 (881)
....|.. .+|..|.++-... |+-.++...+.+..+.
T Consensus 356 ~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 356 AREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8887764 5888888887766 9999998888766543
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.06 E-value=11 Score=41.08 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=58.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHH
Q 002790 168 QGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNY---ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLL 244 (881)
Q Consensus 168 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~---~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li 244 (881)
+.|...|-.||.-|...|..++.++++++|..|-+ .+|...+++-....++.....+|.+.....+ +...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 55677888888888888889998999988887644 4688888877777888888888888876643 344455444
Q ss_pred HH
Q 002790 245 SS 246 (881)
Q Consensus 245 ~~ 246 (881)
+-
T Consensus 117 ~Y 118 (660)
T COG5107 117 EY 118 (660)
T ss_pred HH
Confidence 43
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=93.79 E-value=1.1 Score=49.35 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 580 d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
|..+...+..+....++++.|...++++..++|..+.+|...+....-+|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4555555555556666677777777777777777777777777777777777777777776444
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.73 Score=49.36 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 002790 550 EHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAA 627 (881)
Q Consensus 550 ~~~~~li~~~~~~g~~~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (881)
..+..+.-+|.+.+++.+|++.-++. ..+ +|....-.=..+|...|+++.|+..|++++++.|.|-.+-.-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45667777888888888888877766 333 4556666677889999999999999999999999999888888888888
Q ss_pred cCCHHHH-HHHHHHHHhC
Q 002790 628 SGRWEDA-AKVRISAKTK 644 (881)
Q Consensus 628 ~g~~~eA-~~~~~~m~~~ 644 (881)
..+.++. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7777655 7788888654
No 238
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.70 E-value=12 Score=40.18 Aligned_cols=244 Identities=17% Similarity=0.140 Sum_probs=126.0
Q ss_pred HhcCCHHHHHHHHhhccC-CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChH
Q 002790 318 GKHGDVKVAQNLFSEIEE-KNIV--SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGE 394 (881)
Q Consensus 318 ~~~g~~~~A~~~~~~m~~-~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 394 (881)
.-.|+++.|.+-|+.|.. |... -...|.-.--+.|..+.|...-+.....- +.-.-.+...+...|..|+|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-----p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-----PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHhcCChH
Confidence 347999999999999985 3221 12223333345788888888777776643 233457888999999999999
Q ss_pred HHHHHHHHHHHCC-CCCchhH--HHHHHHHHhh---hchHHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHH
Q 002790 395 EALDLFRKMQLAK-VVANSVT--ISGLLSVCAE---SAALNIGREIHGHVVRVSMNKNILV-QNGLLNMYMKCGCLEEGH 467 (881)
Q Consensus 395 ~A~~l~~~m~~~g-~~p~~~t--~~~ll~~~~~---~g~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~ 467 (881)
.|+++.+.-+... +.++..- -..|+.+-+. ..+...+...-.+..+. .||..- --.-...|.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhh
Confidence 9999998776543 3444322 1223322211 12334444444333332 233211 111234556666666666
Q ss_pred HHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 002790 468 LVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIE-AGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREF 543 (881)
Q Consensus 468 ~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~ 543 (881)
++++.+-+. ....+. +..+.+.| +.++.-+++... ..++||. .+...+..+-...|++..|..--+...
T Consensus 284 ~ilE~aWK~ePHP~ia~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--- 356 (531)
T COG3898 284 KILETAWKAEPHPDIAL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--- 356 (531)
T ss_pred hHHHHHHhcCCChHHHH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---
Confidence 666665432 222221 11222333 233333333221 1133433 244455555555566655555444443
Q ss_pred CCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 002790 544 RIEPQMEHYACMVDLLGRA-GLLQEASDIVKNM 575 (881)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~-g~~~eA~~l~~~m 575 (881)
...|....|..|.+.-... |+-.++...+.+.
T Consensus 357 r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 357 REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3455555555555544332 5555555555444
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.58 E-value=0.42 Score=52.38 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAY----VWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~----~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555553 4444432 3556666666666666666666666654
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.43 E-value=5.3 Score=43.34 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAG---FKPDGVAFVAVLSACSH---AGLVNEGRRIFDMMVREFRIEPQMEHYA 553 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~t~~~ll~a~~~---~g~~~~A~~l~~~m~~~~~~~p~~~~~~ 553 (881)
+.-.++-+|....+++..+++.+.|.... +.-....-....-|+.+ .|+.++|++++..+... .-.+++++|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33455667888999999999999998741 11122222334456667 89999999999985533 5567788888
Q ss_pred HHHHHHHH---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH----HHHhhc----C
Q 002790 554 CMVDLLGR---------AGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKN-T---DVAEAMA----SQIFGL----I 611 (881)
Q Consensus 554 ~li~~~~~---------~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~-~---~~A~~~~----~~~~~~----~ 611 (881)
.+...|-. ...+++|.+.|.+. ..+||...=..++......|. . .+..++. ..+.+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88776642 22478899999887 666765543333333333332 1 1222222 111111 1
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 612 TETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 612 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
-.+-..+.++..+..-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223445568889999999999999999999865
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.25 E-value=1.1 Score=40.73 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH--------------HhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 002790 513 GVAFVAVLSACSHAGLVNEGRRIFDMMV--------------REFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--- 575 (881)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~A~~l~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--- 575 (881)
..++..++.++++.|+++....+++..- ....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555544321 12244566666666666666666666666666554
Q ss_pred -CCCCCHHHHHHHHHHH
Q 002790 576 -PMEPNAYVWGTLLNSC 591 (881)
Q Consensus 576 -~~~pd~~~~~~Ll~~~ 591 (881)
+++-+...|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 4444455666666554
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=3.3 Score=42.72 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCH
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGT---LLNSCRMHKNT 597 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~---Ll~~~~~~g~~ 597 (881)
.....|+..+|..+|+..... .|+ ...--.++.+|...|+.++|..++..++.+-...-|.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456778888888888888733 333 56667788899999999999999999876543333333 12223333333
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 598 DVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 598 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
.+...+ ++-...+|+|...-..++..|...|+.++|.+.+-.+.++.
T Consensus 220 ~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222222 22233489999999999999999999999999888777654
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.02 E-value=10 Score=37.47 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHH
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMIS-GYGMNGLGENALATFEEMIEAGFKP----DGVAFVAV 519 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~l 519 (881)
..+..+...+...++...+.+.+...... +......... .+...|+.+.|...+++.... .| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHh
Confidence 33344444555555566666666655431 1122222223 577788888888888887552 33 23344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 002790 520 LSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHK 595 (881)
Q Consensus 520 l~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g 595 (881)
...+...++.+.+...+....+ ..++ ...+..+...+...+.+++|...+... ...|+ ...+..+...+...+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 4446677888888888888873 3333 567788888888888889998888877 33444 445555555555777
Q ss_pred CHHHHHHHHHHHhhcCCC
Q 002790 596 NTDVAEAMASQIFGLITE 613 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p~ 613 (881)
..+.+...+.+.....|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 899999999998888776
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.91 E-value=2.2 Score=39.23 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=58.0
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHH
Q 002790 556 VDLLGRAGLLQEASDIVKNMPM----E-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTG---SYMLLSNIYAA 627 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m~~----~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 627 (881)
.....+.|++++|.+.|+.+.. . -...+-..|+.++.+.+++++|...+++.++++|.++. ++...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3445567777777777776621 1 12346667788888899999999999999988887653 34444444555
Q ss_pred cCC---------------HHHHHHHHHHHHhC
Q 002790 628 SGR---------------WEDAAKVRISAKTK 644 (881)
Q Consensus 628 ~g~---------------~~eA~~~~~~m~~~ 644 (881)
... ..+|..-|+.+.++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 544 55666666665543
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.82 E-value=19 Score=41.03 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHhhccC--CChhHHHHHH-HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 320 HGDVKVAQNLFSEIEE--KNIVSWNALI-TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
....+.|.++++.+.+ |+...|...- +.+...|+.++|++.|++...... ...+.....+--+.-.+.-..+|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS-EWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh-hHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4567778888888776 6665554432 455667888888888886553211 11233344555666777888888888
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHh-hhchH-------HHHHHHHHHHH
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCA-ESAAL-------NIGREIHGHVV 439 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~-------~~a~~i~~~~~ 439 (881)
.+.|..+.+.. ..+..+|..+..+|. ..++. ++|.+++.++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88888888754 445555555544443 34545 66666666653
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.80 E-value=0.77 Score=46.44 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=78.9
Q ss_pred HHHHHHhcc--cCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 002790 466 GHLVFEQIE--KKDLITWNSMISGYGMN-----GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG----------- 527 (881)
Q Consensus 466 A~~~~~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 527 (881)
.++.|..+. ++|-.+|-+++..|... +.++-....++.|.+.|+.-|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 56778888888887653 556667777899999999999999999998876542
Q ss_pred -----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 002790 528 -----LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQ 566 (881)
Q Consensus 528 -----~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 566 (881)
+-+=++.++++|. .+|+.||.++-..|++++++.+..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2344778999997 7899999999999999999988643
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.74 E-value=13 Score=37.88 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 345 ITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 345 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
+..-.+.|++++|.+.|+.+..+...+ +-...+--.++.++.+.+++++|...+++....
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s--~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFS--PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334455677777777777777654311 112344455566777777777777777776654
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.72 E-value=17 Score=39.56 Aligned_cols=149 Identities=12% Similarity=-0.011 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKP---DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEH 551 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~ 551 (881)
...+|..++..+.+.|+++.|...+.++...+..+ +......-...+...|+..+|+..++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45678888888888999999998888887643211 2334444455566778888888888877741 11111 111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 552 YACMVDLLGRAGLLQEASDI-VKNMPMEPNAYVWGTLLNSCRMH------KNTDVAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l-~~~m~~~pd~~~~~~Ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+++...|.++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111110000 00000000 00000000011232333333333 788999999999999988887777777766
Q ss_pred HHHc
Q 002790 625 YAAS 628 (881)
Q Consensus 625 ~~~~ 628 (881)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 5443
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.67 E-value=0.63 Score=41.37 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCC---cchHHHHHHHHHHcCCH
Q 002790 558 LLGRAGLLQEASDIVKNM-PM-EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL-ITET---TGSYMLLSNIYAASGRW 631 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~-~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-~p~~---~~~~~~l~~~~~~~g~~ 631 (881)
++...|+++.|++.|.+. .. +.....||.-..+++-.|+.++|..-+++++++ .|.. ...|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 355666666666666655 22 234567788888888888888888888888877 3332 24577778888888888
Q ss_pred HHHHHHHHHHHhCC
Q 002790 632 EDAAKVRISAKTKG 645 (881)
Q Consensus 632 ~eA~~~~~~m~~~g 645 (881)
+.|..-|+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888777665
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.53 E-value=14 Score=39.12 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-------C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHH---
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEK-------K--DLITWNSMISGYGMNGLGENALATFEEMIE----AGFKPDGVA--- 515 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~-------~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~t--- 515 (881)
++..++...+.++++.+.|+...+ + ....+..|...|.+..++++|.-+..+..+ .|+.--...
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555566666666655432 1 234566666777777777776655554432 222211112
Q ss_pred --HHHHHHHHHccCCHHHHHHHHHHHHHh---cCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 002790 516 --FVAVLSACSHAGLVNEGRRIFDMMVRE---FRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKN 574 (881)
Q Consensus 516 --~~~ll~a~~~~g~~~~A~~l~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~ 574 (881)
...+.-++...|.+.+|.+..++..+- .|-.+- .....++.+.|...|+.+.|+.-|++
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223344566677777777776665532 122222 33445677778888887777766654
No 251
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.44 E-value=29 Score=41.28 Aligned_cols=67 Identities=9% Similarity=-0.012 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC--CCCC--CHhHHHHHHHHHH-cCCChhHHHHHHHHHHh
Q 002790 51 HNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPF--DCKS--SSLLWNSILRVNV-SNGLYENALKLYVKMRK 125 (881)
Q Consensus 51 ~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~~n~li~~~~-~~g~~~~A~~l~~~m~~ 125 (881)
|.......-+.+...|..||.. |++.++.+.. ..+| +..++-.+...+. ...+++.|...+++...
T Consensus 18 ~~~~~~~~~~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~ 88 (608)
T PF10345_consen 18 HSLATKVKSEEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAIL 88 (608)
T ss_pred HHHHHhcCChhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333445566677777765 4555554442 2223 3445666777776 57889999999887654
Q ss_pred C
Q 002790 126 L 126 (881)
Q Consensus 126 ~ 126 (881)
.
T Consensus 89 l 89 (608)
T PF10345_consen 89 L 89 (608)
T ss_pred h
Confidence 4
No 252
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.42 E-value=10 Score=36.11 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=74.2
Q ss_pred HHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhc
Q 002790 222 LELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKG 301 (881)
Q Consensus 222 ~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 301 (881)
.+.++.+...|++|+...|..+++.+.+.|++.. +..+.+.++-+|.......+-.... ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4555666678888988899999999999988654 4455566777776666544433322 122222222222221
Q ss_pred CCCCcHH-HHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 302 GFEDYVF-VKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 302 g~~~~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
.. .+..++..+...|++-+|.++.+.....+......++.+..+.++...-..+|+-..+
T Consensus 88 -----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 -----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 2334555666666666666666665443333344455555555554444444444433
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.33 E-value=4.7 Score=45.98 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHHH
Q 002790 527 GLVNEGRRIFDMMVREFRIEPQMEHYACM-VDLLGRAGLLQEASDIVKNMPM-E-----PNAYVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~eA~~l~~~m~~-~-----pd~~~~~~Ll~~~~~~g~~~~ 599 (881)
...+.|.++++.+.+. -|+...|... ...+...|++++|++.|++.-. + .....+--+...+....++++
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4577777788777733 4665554333 4556677888888888876521 1 112234445555677889999
Q ss_pred HHHHHHHHhhcCCCCcchHH-HHHHHHHHcCCH-------HHHHHHHHHHHhC
Q 002790 600 AEAMASQIFGLITETTGSYM-LLSNIYAASGRW-------EDAAKVRISAKTK 644 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~eA~~~~~~m~~~ 644 (881)
|...+.++.+...-+..+|. ..+-+|...|+. ++|.+++.+...-
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999887666655555 455556677888 8888888877543
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.05 E-value=38 Score=41.78 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCCh
Q 002790 314 ICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRG 393 (881)
Q Consensus 314 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 393 (881)
++.--+.|.+++|+.++.-=.+.--..|.+...-+...+.+++|.-.|+..-+. .--+.+|...|+|
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDW 981 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccH
Confidence 333344555555555443322222233444444444556666665555543221 1235566667777
Q ss_pred HHHHHHHHHHHHCCCCCchh--HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 002790 394 EEALDLFRKMQLAKVVANSV--TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFE 471 (881)
Q Consensus 394 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 471 (881)
.+|+.+-.+|... -+.. +--.|..-+...++.-+|-++..+.... ..-.+..||+...+++|..+-.
T Consensus 982 r~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 982 REALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 7777777666321 1111 1133444455555555555554443321 1123445666666666666555
Q ss_pred hccc
Q 002790 472 QIEK 475 (881)
Q Consensus 472 ~m~~ 475 (881)
...+
T Consensus 1051 ~~~~ 1054 (1265)
T KOG1920|consen 1051 KAKR 1054 (1265)
T ss_pred hccc
Confidence 4443
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.96 E-value=1.7 Score=44.37 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=55.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM----PMEPN-AYVWGTLL 588 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd-~~~~~~Ll 588 (881)
.|+.-+. +.+.|++.+|.+.|....+.+--.+ ....+--|..++...|++++|...|..+ +..|- +..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444433 3345557777777766664431111 1334445666666666666666666555 22222 23445555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCcc
Q 002790 589 NSCRMHKNTDVAEAMASQIFGLITETTG 616 (881)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 616 (881)
.+..+.|+.++|...++++.+..|....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5566666777777777777666666543
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.76 E-value=6.5 Score=44.23 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred HHHhCCChhHHHHHHH--HhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccc
Q 002790 211 GFALNFDCDGALELFK--RMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAAD 288 (881)
Q Consensus 211 ~~~~~g~~~~A~~l~~--~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 288 (881)
...-.|+++++.++.+ ++. ..+ | ....+.+++.+-+.|.++.|+++..+-..+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r---------------------- 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR---------------------- 324 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH----------------------
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH----------------------
Confidence 3445677777766665 222 111 2 334777888888888888888876543322
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcc
Q 002790 289 HMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368 (881)
Q Consensus 289 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 368 (881)
.+...++|+++.|.++-++.. +...|..|.....+.|+++-|++.|.+...
T Consensus 325 -------------------------FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-- 375 (443)
T PF04053_consen 325 -------------------------FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-- 375 (443)
T ss_dssp -------------------------HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---
T ss_pred -------------------------hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--
Confidence 233445666666666655543 444666666666666666666666655432
Q ss_pred CCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 002790 369 GGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAK 407 (881)
Q Consensus 369 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (881)
|..|+-.|.-.|+.++-.++.+.....|
T Consensus 376 -----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 376 -----------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp -----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred -----------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 4445555556666555555554444443
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=91.76 E-value=8 Score=42.77 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHH
Q 002790 494 GENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIV 572 (881)
Q Consensus 494 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~ 572 (881)
..+|.++-++..+.+ +-|......+..+....++++.|..+|++.. .+.|| ..+|......+.-+|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555554 4445555555555555555666666666665 45555 333333333344444444444444
Q ss_pred Hh
Q 002790 573 KN 574 (881)
Q Consensus 573 ~~ 574 (881)
++
T Consensus 396 ~~ 397 (458)
T PRK11906 396 DK 397 (458)
T ss_pred HH
Confidence 44
No 258
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.54 E-value=62 Score=43.18 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
..+|-.......++|+++.|...+-+....--+..+.-...-.+..|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 46777888888889999999887766532223456666777788999999999999998876
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.29 E-value=10 Score=35.09 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 002790 342 NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSV 421 (881)
Q Consensus 342 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 421 (881)
..++..+.+.+........++.+...+ ..+...++.++..|++.+ ..+.++.++. ..+......+++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-----~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-----SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-----ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 345555555666666666666666544 245556666666666553 3344444432 1222333344555
Q ss_pred HhhhchHHHHHHHH
Q 002790 422 CAESAALNIGREIH 435 (881)
Q Consensus 422 ~~~~g~~~~a~~i~ 435 (881)
|.+.+.++++..++
T Consensus 79 c~~~~l~~~~~~l~ 92 (140)
T smart00299 79 CEKAKLYEEAVELY 92 (140)
T ss_pred HHHcCcHHHHHHHH
Confidence 55444444443333
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=12 Score=38.67 Aligned_cols=154 Identities=13% Similarity=0.094 Sum_probs=98.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 002790 486 SGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLL 565 (881)
Q Consensus 486 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 565 (881)
......|+..+|..+|+...... .-+...-..+..+|...|+.+.|..++..+-.+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888877653 2234456677778888888888888887764221 011112223445666666666
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHH-HHHHHHHH
Q 002790 566 QEASDIVKNMPMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITETTGSYMLLSNIYAASGRWED-AAKVRISA 641 (881)
Q Consensus 566 ~eA~~l~~~m~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~m 641 (881)
.+...+-++....| |...-..+...+...|+.+.|...+=.++.. .-.+...-..|+..+.--|.-+. +..+.++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66666666665556 5566677777788888888888777766655 44456677777777777774443 33344433
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.04 E-value=5.7 Score=42.05 Aligned_cols=134 Identities=7% Similarity=0.136 Sum_probs=75.1
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHh--c----CChHHHHHHHhhcCC-------CCeehHHHHHH
Q 002790 144 FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAK--M----GQMSDSFKLFDKVRV-------KNYISWNMMFS 210 (881)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~--~----g~~~~A~~l~~~m~~-------~~~~~y~~li~ 210 (881)
...+++++++.+..+++.+.+.|+.-+.++|-+....... . .....|..+|+.|++ ++-.++..++.
T Consensus 70 ~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 70 SFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 3334566666666666666666666666555443332222 1 124456667776653 23345555544
Q ss_pred HHHhCCC----hhHHHHHHHHhHHcCCCCCHhH-HHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002790 211 GFALNFD----CDGALELFKRMELEGLEPNFVT-WTSLLSSHARCGR---LEETMDLFDMMRKRGIEVGAEAIAVVL 279 (881)
Q Consensus 211 ~~~~~g~----~~~A~~l~~~m~~~g~~pd~~t-y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll 279 (881)
. ...+ .+.+..+|+.+.+.|+..+... +.+-+-++..... ..++.++++.+++.|+++....|..+-
T Consensus 150 ~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 150 M--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred c--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4 2233 2456777777887777665442 3333333332211 457788888888888887777765443
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.03 E-value=9.8 Score=35.17 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=45.9
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002790 203 ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVC 282 (881)
Q Consensus 203 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 282 (881)
.....++..+...+.+.....+++.+...+ ..+...++.++..|++.. ..+..+.++. ..+......++..|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 344556666666677777777777776665 355556777777777653 3333344432 12223333445555
Q ss_pred hccccchhHHHHH
Q 002790 283 ADLAADHMGKVIH 295 (881)
Q Consensus 283 ~~~~~~~~a~~i~ 295 (881)
.+.+-++.+..++
T Consensus 80 ~~~~l~~~~~~l~ 92 (140)
T smart00299 80 EKAKLYEEAVELY 92 (140)
T ss_pred HHcCcHHHHHHHH
Confidence 5444444433333
No 263
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.46 E-value=1 Score=43.23 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC
Q 002790 558 LLGRAGLLQEASDIVKNM-PMEP------NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGR 630 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~~p------d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (881)
-+.+.|++++|..-|... ..-| ....|..-..+..+.+.++.|+.-+.++++++|........-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777776666554 1111 233455555667889999999999999999999988888888999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 002790 631 WEDAAKVRISAKTKG 645 (881)
Q Consensus 631 ~~eA~~~~~~m~~~g 645 (881)
+++|++-|+++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988764
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.35 E-value=26 Score=36.85 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHhhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH
Q 002790 307 VFVKNALICVYGKHGDVK---VAQNLFSEIEE--KN-IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW 380 (881)
Q Consensus 307 ~~~~~~Li~~~~~~g~~~---~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y 380 (881)
..++..++.+|...+..+ +|.++++.+.. ++ ...+-.-+..+.+.++.+++.+.+.+|...- .-....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-----~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-----DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-----ccccchH
Confidence 346677888888877654 45555555543 33 4455566677777888889999999988743 1133445
Q ss_pred HHHHHHH---HHCCChHHHHHHHHHHHHCCCCCch
Q 002790 381 SAVIGAF---ASNGRGEEALDLFRKMQLAKVVANS 412 (881)
Q Consensus 381 ~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 412 (881)
...+..+ .. .....|...+..+....+.|..
T Consensus 159 ~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 5555444 33 3345666666666655555554
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.24 E-value=27 Score=36.78 Aligned_cols=18 Identities=22% Similarity=-0.018 Sum_probs=12.0
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 002790 591 CRMHKNTDVAEAMASQIF 608 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~ 608 (881)
+.+.+++++|...|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456677777777777543
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.20 E-value=17 Score=40.37 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=65.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCH--HHHHHHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPM--EPNA--YVWGTLLNS 590 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~--~pd~--~~~~~Ll~~ 590 (881)
+-..+..++.+.|+.++|++.+++|.+++...-...+...|+.+|...+.+.++..++.+-.. -|.. .+|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566667788999999999999986543222355677888999999999999998887731 1333 355554444
Q ss_pred HHHcCCH---------------HHHHHHHHHHhhcCCCCc
Q 002790 591 CRMHKNT---------------DVAEAMASQIFGLITETT 615 (881)
Q Consensus 591 ~~~~g~~---------------~~A~~~~~~~~~~~p~~~ 615 (881)
.+..++. ..|.+...++.+.+|--+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4433331 234566666666666443
No 267
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.18 E-value=47 Score=39.51 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 307 VFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 307 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
...-...+..+.+.+++......+..- ..+...-.....+....|+.++|....+.+=.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333344455556667777666633222 23444444555666667776666555554433
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=7.1 Score=40.78 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHH--HHHHHHccCCHHHH
Q 002790 460 CGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVA--FVA--VLSACSHAGLVNEG 532 (881)
Q Consensus 460 ~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~--ll~a~~~~g~~~~A 532 (881)
.|+..+|-..++++.+. |...++--=++|.-.|+.+.-...+++..-. ..||... |.. +.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555432 5555555555566666655555555555532 2233321 111 12223345556666
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 533 RRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
.+.-++.. .+.| |.-.-.++...+...|++.++.+++.+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66555554 2333 2333344555555566666666665554
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.95 E-value=3 Score=43.41 Aligned_cols=158 Identities=11% Similarity=0.109 Sum_probs=112.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHHHcCCH
Q 002790 490 MNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYA----CMVDLLGRAGLL 565 (881)
Q Consensus 490 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 565 (881)
.+|+..+|...++++++. .+.|...+.-.=.+|...|+.+.-...++++.. ...||...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 467888888888888875 466677777778889999998888888888873 3356654433 344556688999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC----CcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 566 QEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE----TTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 566 ~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
++|++.-++. .+. .|...-.++.......++..++.++..+-...-.. -...|...+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988887 333 34455566666678888999998887775444221 12456677778888899999999998
Q ss_pred HHHhCCCccCC
Q 002790 640 SAKTKGLKKVA 650 (881)
Q Consensus 640 ~m~~~g~~~~~ 650 (881)
.-.-+.+.++.
T Consensus 272 ~ei~k~l~k~D 282 (491)
T KOG2610|consen 272 REIWKRLEKDD 282 (491)
T ss_pred HHHHHHhhccc
Confidence 75544444443
No 270
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.74 E-value=2.9 Score=42.71 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPD----GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYAC 554 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~ 554 (881)
.|+.-+. +.+.|++.+|...|...++.. |+ ...+.-|..++...|++++|..+|..+.++++-.|. ++.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3554443 345666888888888887752 22 224556778888888888888888888877666665 577778
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 002790 555 MVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m 575 (881)
|..+..+.|+.++|...|++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 888888888888888888777
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.70 E-value=15 Score=33.14 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=27.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
-++.+...|+-++-.+++.++...+ ++++.....+..||.+.|+..++.+++.++-
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3445555555555555555554322 4555555556666666666666666666555
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.66 E-value=26 Score=35.72 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=91.7
Q ss_pred HHhcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcc---
Q 002790 457 YMKCGCLEEGHLVFEQIEKK------DLITWNSMISGYGMNGLGENALATFEEMIEAG-FKPDGVAFVAVLSACSHA--- 526 (881)
Q Consensus 457 y~~~g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~--- 526 (881)
-.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....- -.|| ..|...|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 34567777777777777542 22334444555666777777777777776642 2233 3344444444321
Q ss_pred ----CCH---HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCH
Q 002790 527 ----GLV---NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVW--GTLLNSCRMHKNT 597 (881)
Q Consensus 527 ----g~~---~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~--~~Ll~~~~~~g~~ 597 (881)
.+. .+|..-|+..+++ -||.. -..+|...+.... |.... .++..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 122 2333333444322 23311 0011111111110 11111 2334558889999
Q ss_pred HHHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 598 DVAEAMASQIFGLITETT---GSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 598 ~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
..|..-++++++.-|... ..+..+..+|.+.|..++|.+.-+-+.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999999998866554 345677888999999999988765443
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.63 E-value=6.6 Score=44.15 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCh
Q 002790 415 ISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLG 494 (881)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~ 494 (881)
...++.-+.+.|..+.|.++... +. .-.+...++|+++.|.++.++.. +...|..|.+...+.|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 45555555566666666555322 11 12345567788888777665544 556788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 002790 495 ENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKN 574 (881)
Q Consensus 495 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~ 574 (881)
+-|.+.|++... |..|+--|.-.|+.+.-.++.+..... | -++....++.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888877776532 455555666677766666666555422 1 234444455556666666666665
Q ss_pred CC
Q 002790 575 MP 576 (881)
Q Consensus 575 m~ 576 (881)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 274
>PRK15331 chaperone protein SicA; Provisional
Probab=89.52 E-value=6.8 Score=37.02 Aligned_cols=85 Identities=6% Similarity=-0.061 Sum_probs=42.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 002790 488 YGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQE 567 (881)
Q Consensus 488 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 567 (881)
+-..|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|...|.....- . .-|+..+--...+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 344566666666666555432 122223344444444455666666666554411 1 1123333344555666666666
Q ss_pred HHHHHHhC
Q 002790 568 ASDIVKNM 575 (881)
Q Consensus 568 A~~l~~~m 575 (881)
|.+.|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 66665554
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=53 Score=39.02 Aligned_cols=53 Identities=6% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002790 555 MVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIF 608 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~ 608 (881)
++..+.+..+.+.+..+.+..+.. ++..|..+++.+.+.+..+.-.+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 444556666677777777766544 66777777777777776555555555444
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.21 E-value=2.4 Score=37.82 Aligned_cols=87 Identities=18% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcC
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM----PMEPN--AYVWGTLLNSCRMHK 595 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd--~~~~~~Ll~~~~~~g 595 (881)
....|+++.|++.|.+.. .+.|. ...||.-..++.-+|+.++|++=+++. +-+-. -..|..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 344555555555555554 33332 455555555555555555555555443 11100 112333333466777
Q ss_pred CHHHHHHHHHHHhhcCC
Q 002790 596 NTDVAEAMASQIFGLIT 612 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p 612 (881)
+.+.|..-|+.+.++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777766655533
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.95 E-value=10 Score=34.96 Aligned_cols=115 Identities=15% Similarity=0.025 Sum_probs=61.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc
Q 002790 485 ISGYGMNGLGENALATFEEMIEAGF--KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRA 562 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~ 562 (881)
.....+.|++++|.+.|+.+...=. +-....-..++.++.+.+++++|...+++.++-+--.|+ .-|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344556777777777777766410 111235566677777777777777777777743222222 3344444444332
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 563 GLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 563 g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
...+..+.-+- ..+ +..+....|...++++++..|.+.
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22221111111 111 122345678888888888888865
No 278
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.77 E-value=20 Score=35.30 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 002790 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMV 556 (881)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li 556 (881)
...||-+.--+...|+++.|.+.|+...+.. |.- .++..-.-++.-.|++.-|.+=+...-+ -.|+..--...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHH
Confidence 3456666666666777777777777766643 221 1111111123345666666655444432 233211111111
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCCC-------cchHHHHHHHHHHc
Q 002790 557 DLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRM-HKNTDVAEAMASQIFGLITET-------TGSYMLLSNIYAAS 628 (881)
Q Consensus 557 ~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~-~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 628 (881)
-.-.+.-++.+|..-+.+--...|..-|...|-.+.- +=..+ .+++++.+...++ ..+|..|+.-|...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1122333455555443332222344445444443221 11111 2222222221111 36899999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 002790 629 GRWEDAAKVRISAKTKG 645 (881)
Q Consensus 629 g~~~eA~~~~~~m~~~g 645 (881)
|+.++|..+|+.....+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999999776654
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.73 E-value=0.84 Score=30.93 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 617 SYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 617 ~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
No 280
>PRK09687 putative lyase; Provisional
Probab=88.64 E-value=35 Score=35.92 Aligned_cols=203 Identities=7% Similarity=0.027 Sum_probs=91.7
Q ss_pred CChhhHHHHHHHHHHCCCh----HHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHH--HHHHHHHHHHHcCCCCchh
Q 002790 375 PNVISWSAVIGAFASNGRG----EEALDLFRKMQLAKVVANSVTISGLLSVCAESAALN--IGREIHGHVVRVSMNKNIL 448 (881)
Q Consensus 375 p~~~~y~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~i~~~~~~~g~~~~~~ 448 (881)
+|...-...+.++.+.|+. +++...+..+... .|+...-...+.++...+... ............-..++..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~ 143 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTN 143 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHH
Confidence 3444444455555555543 3455555555332 334333333333333322110 0011112222222233445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNG-LGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
+-...+.++.+.|+.+....+..-+..+|...-..-+.++.+.+ +...+...+..+.. .+|...-...+.++.+.|
T Consensus 144 VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 144 VRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccC
Confidence 55555666666665443333333444445444444444555432 23455555555553 445556666666666666
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 002790 528 LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNS 590 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~ 590 (881)
+. .+...+-+..+. ++ .....+.+++..|.. +|...+.++ ...||..+-...+.+
T Consensus 221 ~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 221 DK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred Ch-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 63 444444444321 12 223455566666664 455555554 234455544443333
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.35 E-value=16 Score=34.89 Aligned_cols=132 Identities=9% Similarity=0.062 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHHh
Q 002790 118 KLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMG--QMSDSFKLFD 195 (881)
Q Consensus 118 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~l~~ 195 (881)
+.++.+.+.|++|+...|..+++.+.+.+... .+.+++..++-+|.......+-.+.... -..-|.+++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~--------~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS--------QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHH
Confidence 44555556677777777777777777766532 3344444454444443333222222111 0122223333
Q ss_pred hcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002790 196 KVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK 265 (881)
Q Consensus 196 ~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 265 (881)
++. ..+..++..+...|++-+|+++.+.... -+......++.+..+.++...-..+|+-..+
T Consensus 87 RL~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 2345555566666666666666655421 1222224455555555554444444443333
No 282
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.23 E-value=64 Score=38.43 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=24.6
Q ss_pred HHHHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 002790 314 ICVYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQL 364 (881)
Q Consensus 314 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 364 (881)
+..-.+.++++.+...+..|.. . ...-..-+.+++...|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333455566666555555543 1 1112223344444456666666555554
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.03 E-value=1 Score=46.76 Aligned_cols=93 Identities=8% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCC
Q 002790 520 LSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNMP-ME-PNAYVWGTLLNSCRMHKN 596 (881)
Q Consensus 520 l~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m~-~~-pd~~~~~~Ll~~~~~~g~ 596 (881)
..-|.+.|.+++|+..|.... .+.| +++++..-..+|.+..++..|+.-.+..- .. --...|..-..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456778888999998888776 5677 78888888888888888887765444331 11 012244444444455678
Q ss_pred HHHHHHHHHHHhhcCCCCc
Q 002790 597 TDVAEAMASQIFGLITETT 615 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~ 615 (881)
..+|.+-++.++++.|.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8888888888888888854
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.96 E-value=1 Score=29.85 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
+|..+...+...|++++|+..++++++++|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555666666666665555554
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.74 E-value=1.4 Score=28.96 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
|..+...+...|++++|++.++++++++|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444444555555555555555555555554
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.59 E-value=19 Score=33.97 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=54.7
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMPM-EPNAYVWGTLLNSCRMHKNTDVA 600 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m~~-~pd~~~~~~Ll~~~~~~g~~~~A 600 (881)
-.+.++.+++..+++.+. -+.|.. ..-..-...+.+.|++.+|..+|+++.. .|....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345677888888888876 567763 3333344557788888888888888843 35555556666666655444444
Q ss_pred HHHHHHHhhcCC
Q 002790 601 EAMASQIFGLIT 612 (881)
Q Consensus 601 ~~~~~~~~~~~p 612 (881)
....+++.+..+
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 445555555443
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.52 E-value=19 Score=34.18 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh-HHHHHHHH--Hhh
Q 002790 348 YAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV-TISGLLSV--CAE 424 (881)
Q Consensus 348 ~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~ 424 (881)
+.+.+..++|+.-|..+.+.|.++ .| +-.-.-+.....+.|+...|...|.+.-...-.|-.. -...|=.+ +..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~--Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS--YP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc--ch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 355677777888887777766311 11 1111222344567778888888888776554444332 11111111 223
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE 474 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 474 (881)
.|.++....-.+.+...+-+.....-.+|.-+-.+.|++.+|.+.|..+.
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44444444444333333333333333444444445555555555555443
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.30 E-value=0.98 Score=32.21 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 100 WNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 100 ~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
|..+..+|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555443
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.09 E-value=80 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=22.1
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002790 561 RAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAE 601 (881)
Q Consensus 561 ~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~ 601 (881)
+.+++++|+++.++- .|...|..||+-+...-.+-.+.
T Consensus 673 el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHHHHH
Confidence 334555555555443 47778888887776554444443
No 290
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.70 E-value=41 Score=33.67 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHH
Q 002790 316 VYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEE 395 (881)
Q Consensus 316 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 395 (881)
.++-.+++++|-++|.+.. +.|-..++|..|-..|-+..+...+.+.+.|..+--.-..-+.+..++.+
T Consensus 23 lfgg~~k~eeAadl~~~Aa-----------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~e 91 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA-----------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEE 91 (288)
T ss_pred ccCCCcchHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHH
Confidence 3444567888888877653 22333333333333333332221111123333332222333445557888
Q ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcc
Q 002790 396 ALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKC-GCLEEGHLVFEQIE 474 (881)
Q Consensus 396 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~~~~m~ 474 (881)
|...++... ..+...|++..|-..+..+-+ .|-.. .++++|+..|+..-
T Consensus 92 Av~cL~~ai---------------eIyt~~Grf~~aAk~~~~iaE---------------iyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 92 AVNCLEKAI---------------EIYTDMGRFTMAAKHHIEIAE---------------IYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHHHHHHH---------------HHHHhhhHHHHHHhhhhhHHH---------------HHhhhHHHHHHHHHHHHHHH
Confidence 777776543 446667777766665544322 22222 34444444444432
Q ss_pred c------CCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 002790 475 K------KDLITWNSM---ISGYGMNGLGENALATFEEMIEAGFKPDG 513 (881)
Q Consensus 475 ~------~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 513 (881)
+ .+...--.+ ..--+..+++.+|+++|++.....+..+.
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 1 111111112 22234567889999999988876544443
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.04 E-value=34 Score=38.20 Aligned_cols=145 Identities=13% Similarity=0.109 Sum_probs=79.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 002790 208 MFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAA 287 (881)
Q Consensus 208 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 287 (881)
+|...=+..+++.-.+.-++..+. .||-.+.-.++ +--......++.++|++..+.|- ..+.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----------~~lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----------ASLGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----------Hhhchhhh
Confidence 333334556666666666666544 45443322121 22234557888888888766541 01111100
Q ss_pred chhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--CC---hhHHHHHHHHHHHcCChHHHHHHHH
Q 002790 288 DHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--KN---IVSWNALITSYAEAGLCDEAVEVFS 362 (881)
Q Consensus 288 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~A~~l~~ 362 (881)
.+..-..++........+-..+-..|..+.-+.|+.++|.+.|++|.+ |. ......++.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111011112222222233344445566677778888888888888864 22 2356678888888888888888888
Q ss_pred HHHH
Q 002790 363 QLEK 366 (881)
Q Consensus 363 ~m~~ 366 (881)
+-.+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 7654
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.12 E-value=8.1 Score=40.14 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCCCCchhH
Q 002790 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL-----AKVVANSVT 414 (881)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 414 (881)
++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 44455555666666666666666666644 45666777777777777777777777766643 466665554
Q ss_pred HHHH
Q 002790 415 ISGL 418 (881)
Q Consensus 415 ~~~l 418 (881)
....
T Consensus 230 ~~~y 233 (280)
T COG3629 230 RALY 233 (280)
T ss_pred HHHH
Confidence 4333
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.70 E-value=50 Score=35.87 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT----ETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 580 d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...+|..+...+++.|+++.|...+.++....+ ..+.+...-+..+...|+.++|+..++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999987642 246677788999999999999999998887743
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.20 E-value=37 Score=32.33 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHhCCChhHHHHHHHHhHHcCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002790 212 FALNFDCDGALELFKRMELEGLEPNFVT-WTSLLSSHARCGRLEETMDLFDMMRKRGIEV 270 (881)
Q Consensus 212 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 270 (881)
+++.+..++|+.-|.++.+.|...=... ---+.....+.|+...|...|.+.-...-.|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 3566667777777777776553321111 1112233456677777777777766554334
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.09 E-value=7.9 Score=40.14 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=67.9
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC-CCe-----ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHh
Q 002790 165 MGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV-KNY-----ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFV 238 (881)
Q Consensus 165 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-~~~-----~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 238 (881)
.|.+....+...++..-....+++++...+-++++ ++. .+-.+.++ ++-.-++++++.++..=...|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34455555666666665666778888877766653 211 11111222 223346778888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 239 TWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 239 ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
+++.+|+.+.+.+++.+|..+.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776553
No 296
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.05 E-value=22 Score=37.69 Aligned_cols=130 Identities=10% Similarity=0.175 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--ccCCcccccchHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCh
Q 002790 113 YENALKLYVKMRKLGVLGDGFTFPLVIRACK--FMGSFRFRFSFGQIVHNHVLQMGF---QGNVHIVNELIGMYAKMGQM 187 (881)
Q Consensus 113 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~m~~~g~---~~~~~~~~~Li~~~~~~g~~ 187 (881)
+++.+.+++.|++.|+.-+.++|-+..-... ...+.+.-...+..+++.|.+... .++-.++..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 3455678888899888888887766443333 344555555556889999988753 3455566666554 33333
Q ss_pred ----HHHHHHHhhcCC-----CCeehHHHHHHHHHhCCC---hhHHHHHHHHhHHcCCCCCHhHHHHHH
Q 002790 188 ----SDSFKLFDKVRV-----KNYISWNMMFSGFALNFD---CDGALELFKRMELEGLEPNFVTWTSLL 244 (881)
Q Consensus 188 ----~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~ty~~li 244 (881)
+.+..+|+.+.. .|..-+.+-+-++..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345555555543 233333333333332221 457889999999999998888877654
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.84 E-value=57 Score=32.97 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHH
Q 002790 379 SWSAVIGAFASNGRGEEALDLFRKM 403 (881)
Q Consensus 379 ~y~~li~~~~~~g~~~~A~~l~~~m 403 (881)
.|+--...|..+|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4445555666666666665555544
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.75 E-value=2.2 Score=28.87 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
+|..|...|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888885543
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.42 E-value=56 Score=32.79 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=15.9
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCC
Q 002790 591 CRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
-...+++.+|+.+|+++....-+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35567888888888887655333
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.90 E-value=5.9 Score=41.15 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++..++..+...++++.+...++++.+.+|-+...|..++.+|.+.|+...|+..|+.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456677777888889999999999999999999999999999999999999999999988763
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.86 E-value=8.4 Score=36.24 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=47.0
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 591 CRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
-.+.++.++++.++..+.-+.|..+..-..-+..+.+.|+|.+|..+++.+.+..
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4567788899999998888889888888888888999999999999999887654
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.78 E-value=7.9 Score=35.78 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=48.8
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
...++.++++.+++.+.-+-|..+..-..-+..+.+.|+|+||.++++...+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 4588999999999999999999998888999999999999999999998887653
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.32 E-value=18 Score=40.99 Aligned_cols=149 Identities=19% Similarity=0.077 Sum_probs=103.8
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 002790 458 MKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFD 537 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~ 537 (881)
.-.|+++.|..++..+.++ ..+.++.-+.+.|-.++|+++ .+|..-.- ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHH
Confidence 3457777777777666632 334455666677777777654 33333211 22346789999988877
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 538 MMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 538 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+.+...+....|.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 653 56779999999999999999999998753 366777777778887776666666665544443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 002790 618 YMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 618 ~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
-..+|...|+++++++++.
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHH
Confidence 3356778999999998876
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.20 E-value=2.8 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
..+..++.+|.+.|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999988653
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.10 E-value=1.2e+02 Score=35.54 Aligned_cols=79 Identities=13% Similarity=-0.015 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc---CCHHHHHH
Q 002790 564 LLQEASDIVKNMPMEPNAYVWGTLLNSCRM----HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS---GRWEDAAK 636 (881)
Q Consensus 564 ~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~eA~~ 636 (881)
+.+.+..++.+...+-+......|-..|.. ..+.+.|...|.++.+.. ......++.++.+- ..+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 445555666655444445555555544432 246778888887776665 56666777776543 12678888
Q ss_pred HHHHHHhCC
Q 002790 637 VRISAKTKG 645 (881)
Q Consensus 637 ~~~~m~~~g 645 (881)
+++...+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 888776643
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.71 E-value=3 Score=27.51 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+|..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 47889999999999999999999988763
No 307
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.68 E-value=1.6e+02 Score=36.08 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQL 405 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~ 405 (881)
.-|..|+..|...|+.++|+++|.+...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3588899999999999999999998875
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.80 E-value=31 Score=37.94 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=23.1
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 524 SHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 524 ~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
...|+++.+.+.+....+ -+.....+..+++..+.+.|++++|...-..|
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 345555555555554431 12222344444555555555555554444444
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.72 E-value=20 Score=35.36 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCcceeEEEcCeEEEEeeccCCCcc
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSD 673 (881)
Q Consensus 594 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 673 (881)
.|-...|.--+.+.+.+.|.-+.+|+.|+.-+...|+++.|.+.|+...+-. |+..+.-+...+.-+. |.+.+-.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD----p~y~Ya~lNRgi~~YY-~gR~~LA 152 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----PTYNYAHLNRGIALYY-GGRYKLA 152 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC----CcchHHHhccceeeee-cCchHhh
Confidence 3455666667778888899999999999999999999999999999776643 3333333333343333 3322221
Q ss_pred hHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhccccchhHH
Q 002790 674 LKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVKRIQ 714 (881)
Q Consensus 674 ~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~~~~~~~~~ 714 (881)
.+++.+-..+..-.|-...|++..+.+-+.+++.
T Consensus 153 -------q~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~ 186 (297)
T COG4785 153 -------QDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAK 186 (297)
T ss_pred -------HHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHH
Confidence 1234444444444555567777777766655544
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.56 E-value=40 Score=32.65 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKK------DLITWNSMISGYGMNGLGENALATFEEMI 505 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 505 (881)
.+..+.+.|++.|+.++|.+.|.++.+. -+..+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445566666666666666666665543 12344445555555566665555555444
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.35 E-value=27 Score=33.87 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CCCh----h
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACSHAGLVNEGRRIFDMMVREFRI--EPQM----E 550 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~--~p~~----~ 550 (881)
..+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+...-..- .++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 367778889999999999999999998876555554 5677888888889998888888777532111 1111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
.|..+ .+...|++.+|.+.|-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 12222 234567888888887766
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.16 E-value=3.9 Score=26.85 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
|..+...+...|++++|...+++++++.|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44444455555555555555555555544
No 313
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.00 E-value=1.2e+02 Score=33.81 Aligned_cols=89 Identities=15% Similarity=0.046 Sum_probs=44.6
Q ss_pred HHCCChHHHHHHHHHHHHCC-CCCch-------hHHHHHH-HHHhhhchHHHHHHHHHHHHHcCCCCchhHH--HHHHHH
Q 002790 388 ASNGRGEEALDLFRKMQLAK-VVANS-------VTISGLL-SVCAESAALNIGREIHGHVVRVSMNKNILVQ--NGLLNM 456 (881)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g-~~p~~-------~t~~~ll-~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~--~~Li~~ 456 (881)
.-.|++.+|++-..+|.+.- -.|.. .....++ ..|+..+-++.|+.-|....+.--..|...+ ..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 44678888888777776532 12221 1111122 2234455666666666555543333333222 223445
Q ss_pred HHhcCCHHHHHHHHHhcccC
Q 002790 457 YMKCGCLEEGHLVFEQIEKK 476 (881)
Q Consensus 457 y~~~g~~~~A~~~~~~m~~~ 476 (881)
|.+.|+.+.-.++++.+..+
T Consensus 414 YL~~~~~ed~y~~ld~i~p~ 433 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPL 433 (629)
T ss_pred HHHhccHHHHHHHHHhcCCC
Confidence 56666666666666665544
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.86 E-value=0.66 Score=43.30 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=37.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 002790 208 MFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFD 261 (881)
Q Consensus 208 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 261 (881)
+|..+.+.+.++....+++.+...+..-+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 455566677777777888887766545556677788888888877777777765
No 315
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.11 E-value=1.7e+02 Score=34.88 Aligned_cols=224 Identities=12% Similarity=0.098 Sum_probs=91.6
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHH---HHHHhCCCCch
Q 002790 95 SSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHN---HVLQMGFQGNV 171 (881)
Q Consensus 95 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---~m~~~g~~~~~ 171 (881)
.+...|- +|=.+.|.|++++|.++..+... ........|...+..+....+..-..+...++.. +..+.....|+
T Consensus 110 ~~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 110 NGDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TTEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 4555674 66678899999999998866554 3456667888888888765432211111133333 33333332254
Q ss_pred h---HHHHHHHHHHhcCChHHHH-HHHhhcCCCCeehHHHHHHHHHhCC-----------ChhHHHHHHHHhHHcCCCCC
Q 002790 172 H---IVNELIGMYAKMGQMSDSF-KLFDKVRVKNYISWNMMFSGFALNF-----------DCDGALELFKRMELEGLEPN 236 (881)
Q Consensus 172 ~---~~~~Li~~~~~~g~~~~A~-~l~~~m~~~~~~~y~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~pd 236 (881)
+ +|..+ +++.-...-. .+...+. -..|-.|. +++.. .+++..+.+.+.-+.-+.+
T Consensus 188 yK~AvY~il----g~cD~~~~~~~~V~~tiE---D~LW~~L~--~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~- 257 (613)
T PF04097_consen 188 YKRAVYKIL----GRCDLSRRHLPEVARTIE---DWLWLQLS--LVREDERSSSSAYERYTLEDLQKLILKYGESHFNA- 257 (613)
T ss_dssp HHHHHHHHH----HT--CCC-S-TTC--SHH---HHHHHHHH--H---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHHHHHHH----hcCCccccchHHHhCcHH---HHHHHHHH--hhccCCCccccccccccHHHHHHHHHHhchhhccc-
Confidence 4 34333 3332211111 1111100 00111111 00000 0112222222222222233
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcC-CCCcHHHHHHHHH
Q 002790 237 FVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGG-FEDYVFVKNALIC 315 (881)
Q Consensus 237 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~ 315 (881)
....-.....+.-.|+++.|++.+-+ ..+...|.+.+.+.+..+.-.+-..... ..+.... -.+...-+..||.
T Consensus 258 ~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 258 GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHH
Confidence 11112233445678888888888766 3445666777777666554333222211 2111111 0111144667777
Q ss_pred HHHh---cCCHHHHHHHHhhccC
Q 002790 316 VYGK---HGDVKVAQNLFSEIEE 335 (881)
Q Consensus 316 ~~~~---~g~~~~A~~~~~~m~~ 335 (881)
.|.+ ..+..+|.+.|--+..
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 7776 3567788887776654
No 316
>PRK09687 putative lyase; Provisional
Probab=76.90 E-value=1e+02 Score=32.40 Aligned_cols=91 Identities=14% Similarity=-0.003 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHccCCCCCCCChhhHHHHH
Q 002790 306 YVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAG-LCDEAVEVFSQLEKLDGGSMERPNVISWSAVI 384 (881)
Q Consensus 306 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li 384 (881)
+..+-...+.++++.++.+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .+|...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-------D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-------DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-------CCChHHHHHHH
Confidence 44455555666666665443333333333444443334444444332 13344444444443 34445555555
Q ss_pred HHHHHCCChHHHHHHHHHHH
Q 002790 385 GAFASNGRGEEALDLFRKMQ 404 (881)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~ 404 (881)
.++.+.|+. .|...+-+..
T Consensus 214 ~aLg~~~~~-~av~~Li~~L 232 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKEL 232 (280)
T ss_pred HHHHccCCh-hHHHHHHHHH
Confidence 666666553 3444444443
No 317
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=76.49 E-value=1.5e+02 Score=34.07 Aligned_cols=182 Identities=10% Similarity=0.031 Sum_probs=92.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHH
Q 002790 337 NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTIS 416 (881)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 416 (881)
+..+|..-+.--.+.|+.+.+.-+|++..--- ..=...|--.+...-..|+.+-|..++....+--++-.+.+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-----A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-----ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-----hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 34567777777778888888877777664310 0111234444444445577777776666554433222222211
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH---HHHHhccc--CCHHHHHHHHHHHH--
Q 002790 417 GLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGH---LVFEQIEK--KDLITWNSMISGYG-- 489 (881)
Q Consensus 417 ~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~---~~~~~m~~--~d~~~~~~li~~~~-- 489 (881)
.--.-+-..|+...|..+++.+...- +.-+.+-..-+....+.|..+.+. .++....+ .+....+.+.--++
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 11112334567778888877776653 222222233345556667776666 33333221 12222222222222
Q ss_pred ---HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 002790 490 ---MNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH 525 (881)
Q Consensus 490 ---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (881)
-.++.+.|..++.+|.+. .+++..-|..++.-+..
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 235666677777766664 34555555555554443
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.33 E-value=2.6 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=16.9
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHH
Q 002790 545 IEPQ-MEHYACMVDLLGRAGLLQEAS 569 (881)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~eA~ 569 (881)
+.|+ ...|+.+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3554 667777777777777777764
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.18 E-value=4.4 Score=27.95 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+++.|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988765
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.09 E-value=1.7e+02 Score=34.65 Aligned_cols=169 Identities=8% Similarity=0.006 Sum_probs=86.8
Q ss_pred HHHHHcCCChhHHHHHHhhCCCCCCC--CHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCC
Q 002790 70 LSIYARFGRLFDARNVFETAPFDCKS--SSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGS 147 (881)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 147 (881)
|+-+.+.+.+++|...-+......+. -...+...|..+...|++++|-...-.|... +..-|.-.+.-++..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 55566667788888777665542221 3456777888888888888888877777654 33444444444444444
Q ss_pred cccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHH
Q 002790 148 FRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKR 227 (881)
Q Consensus 148 ~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~ 227 (881)
.. .+...+....-..+..+|..++..+.. ..-..+++.+.+-....|+.+--.-+-.- +
T Consensus 439 l~-------~Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~Wp~~Lys~l~iisa~~~----------q 497 (846)
T KOG2066|consen 439 LT-------DIAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEWPGHLYSVLTIISATEP----------Q 497 (846)
T ss_pred cc-------hhhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhCChhhhhhhHHHhhcch----------H
Confidence 32 222222222222455667777766665 22222223222222233332221110000 1
Q ss_pred hHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002790 228 MELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK 265 (881)
Q Consensus 228 m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 265 (881)
..+. -.++ ..-..|..-|...+++.+|+.++-..++
T Consensus 498 ~~q~-Se~~-~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 498 IKQN-SEST-ALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHhh-ccch-hHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1111 0111 1223377778888888888888766544
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.93 E-value=5.5 Score=26.10 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+|..++..|.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.12 E-value=9.2 Score=40.04 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHc
Q 002790 485 ISGYGMNGLGENALATFEEMIEAGFKP-DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRA 562 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~ 562 (881)
..-|.+.|.+++|++.|.+-+.. .| |.+++..-..+|.+..++..|..=..... .+.-. +..|.--+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---aLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---ALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 45699999999999999988765 56 88999999999999998888776666555 11111 22333333333344
Q ss_pred CCHHHHHHHHHhC-CCCCCH
Q 002790 563 GLLQEASDIVKNM-PMEPNA 581 (881)
Q Consensus 563 g~~~eA~~l~~~m-~~~pd~ 581 (881)
|+..||.+-++.. ..+|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 5555565555444 566764
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.00 E-value=24 Score=36.81 Aligned_cols=97 Identities=11% Similarity=0.218 Sum_probs=68.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 002790 442 SMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---------DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPD 512 (881)
Q Consensus 442 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 512 (881)
|.+....+...++..-....+++++...+-++... ...+|-.++ . .-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll---l-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL---L-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH---H-ccChHHHHHHHhCcchhccccc
Confidence 44444555555555555567778887777766532 233333332 2 2357788888888889999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 002790 513 GVAFVAVLSACSHAGLVNEGRRIFDMMVRE 542 (881)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 542 (881)
..+++.++..+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887766643
No 324
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.98 E-value=2.4e+02 Score=35.31 Aligned_cols=257 Identities=11% Similarity=0.020 Sum_probs=148.8
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 002790 326 AQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL 405 (881)
Q Consensus 326 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 405 (881)
...+...+.++|...-...+..+.+.+.. ++...+.+..+ .+|...-...+.++.+.+........+..+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~-------D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG-------DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc
Confidence 34555555667777777777777776653 34455555543 34444444555555544332222233333333
Q ss_pred CCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHH
Q 002790 406 AKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMI 485 (881)
Q Consensus 406 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li 485 (881)
. +|...-...+.++...+..+ ...+.. .. -.+|..+-...+.++.+.+..+. +......++...-...+
T Consensus 695 ~---~d~~VR~~A~~aL~~~~~~~-~~~l~~-~L---~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa 763 (897)
T PRK13800 695 S---PDPVVRAAALDVLRALRAGD-AALFAA-AL---GDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVA 763 (897)
T ss_pred C---CCHHHHHHHHHHHHhhccCC-HHHHHH-Hh---cCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHH
Confidence 2 55555555666665443211 111222 22 24566666667777776655432 33445566777777777
Q ss_pred HHHHHcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 002790 486 SGYGMNGLGEN-ALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGL 564 (881)
Q Consensus 486 ~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 564 (881)
.++...+..+. +...+.++.. .+|...-...+.++.+.|..+.+...+..+.+ .++...-...+.++.+.+.
T Consensus 764 ~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 764 KGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA 836 (897)
T ss_pred HHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc
Confidence 78877765432 4455555554 56777888888888888876655444544442 3555566667777777775
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 565 LQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 565 ~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
+++...+..+-..|+..+....+.++.+......+...+..+.+
T Consensus 837 -~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 837 -DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 45666666665677888887888887775434455666655554
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.96 E-value=19 Score=26.97 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCcceeEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcC
Q 002790 617 SYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKG 692 (881)
Q Consensus 617 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 692 (881)
....++.++.+.|++++|.++.+.+.+.. |+..++....+.+.+.|+..|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccC
Confidence 45678889999999999999999887632 445555555555666676666
No 326
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.65 E-value=94 Score=30.39 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHHHcCCHHHH
Q 002790 496 NALATFEEMIEAGFKPDGVAFV--AVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYA-----CMVDLLGRAGLLQEA 568 (881)
Q Consensus 496 ~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA 568 (881)
+.....+++....-.....++. .+...+...|++++|...++... +...| ..+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---~~t~D-e~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---AQTKD-ENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccchh-HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555565542121112222 23345667788888888887766 22222 2222 344566778888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 569 SDIVKNMPMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 569 ~~l~~~m~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
++.++....+. .......-.+.+...|+.++|...|+++++.++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 88887764221 111122223346677777777777777776653
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.40 E-value=24 Score=30.30 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 496 NALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 496 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
+..+-+..+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455556666677899999999999999999999999999999986644 33337776654
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.81 E-value=5 Score=24.78 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHH
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888999998888765
No 329
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=71.98 E-value=1.5e+02 Score=32.13 Aligned_cols=208 Identities=17% Similarity=0.191 Sum_probs=123.4
Q ss_pred hchHHHHHHHHHHHHH-----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHH-HHcCChHHHH
Q 002790 425 SAALNIGREIHGHVVR-----VSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGY-GMNGLGENAL 498 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~-----~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~-~~~g~~~~A~ 498 (881)
.++.+.+.+-+-...+ .+...+..++..+++.+...++|+.--+. +..+ -++|+...|+
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~---------------i~~Lskkrgqlk~ai 89 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQ---------------IRLLSKKRGQLKQAI 89 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHH---------------HHHHHHHhhHHHHHH
Confidence 4455555443333322 23444555666666666666666543222 2222 3356666655
Q ss_pred HHH--HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 499 ATF--EEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ---MEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 499 ~l~--~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
... +-|.-..-.||..|-..++..+.. .. +..+-.. ...-..|...+-.+|+.++|.+++.
T Consensus 90 ~~Mvq~~~~y~~~~~d~~~k~~li~tLr~-------------Vt-egkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~ 155 (439)
T KOG1498|consen 90 QSMVQQAMTYIDGTPDLETKIKLIETLRT-------------VT-EGKIYVEVERARLTKMLAKIKEEQGDIAEAADILC 155 (439)
T ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHH-------------hh-cCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 422 222222235566655555554321 11 1111111 2233456677889999999999999
Q ss_pred hCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHhhcCCCCc-------chHHHHHHHHHHcCCHHHH
Q 002790 574 NMPMEPNAYVWGT------------LLNSCRMHKNTDVAEAMASQIFGLITETT-------GSYMLLSNIYAASGRWEDA 634 (881)
Q Consensus 574 ~m~~~pd~~~~~~------------Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~eA 634 (881)
+.+.+ ||.+ =+..|...+|+-.|.-+-+++.....+++ ..|..++....+.+.+=++
T Consensus 156 el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v 231 (439)
T KOG1498|consen 156 ELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNV 231 (439)
T ss_pred hcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhH
Confidence 88533 3332 24568888999999999998876633322 4688899999999999999
Q ss_pred HHHHHHHHhCCCccCCcceeEEEcCeEEEEe
Q 002790 635 AKVRISAKTKGLKKVAGQSWIEVKRKIHMFS 665 (881)
Q Consensus 635 ~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~ 665 (881)
-+.++...+-|-.+....-|++....+-.|.
T Consensus 232 ~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 232 CRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 9999999988766655555665554443443
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.77 E-value=5.5 Score=25.76 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 617 SYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 617 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999988764
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=71.61 E-value=30 Score=29.38 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 494 GENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 494 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
.-++.+-++.+....+.|+.....+.++||.+.+++..|.++++..+.+.+. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355566667777788999999999999999999999999999988754333 4456666553
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.32 E-value=57 Score=30.35 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=40.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 002790 525 HAGLVNEGRRIFDMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMPMEP-NAYVWGTLLNSCR 592 (881)
Q Consensus 525 ~~g~~~~A~~l~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m~~~p-d~~~~~~Ll~~~~ 592 (881)
..++.+++..+++.|. -+.|+. ..-..-...+...|++++|..+|++....+ ....-..|+..|.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 4677888888888776 566662 222333445778888888888888885443 3333334444443
No 333
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.28 E-value=99 Score=31.95 Aligned_cols=94 Identities=5% Similarity=0.018 Sum_probs=52.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH---hcCCCCChhHH-HHHHHHHHHcCCHHHHHHHHHh-------CCCCCCHHHHH
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVR---EFRIEPQMEHY-ACMVDLLGRAGLLQEASDIVKN-------MPMEPNAYVWG 585 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~---~~~~~p~~~~~-~~li~~~~~~g~~~eA~~l~~~-------m~~~pd~~~~~ 585 (881)
.-++..+.+.|.+.+|+.+...+.. ++.-+|+..+. -.=-..|....+..++..-+.. .-.+|-...-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 3466777888888888876655433 33444542221 1112334444444443333322 23345445555
Q ss_pred HHHHH--HHHcCCHHHHHHHHHHHhhc
Q 002790 586 TLLNS--CRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 586 ~Ll~~--~~~~g~~~~A~~~~~~~~~~ 610 (881)
-|+++ .|...++..|..+|-++.+.
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhc
Confidence 55665 46777888898888888765
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.09 E-value=48 Score=30.22 Aligned_cols=48 Identities=4% Similarity=-0.052 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhhc-CCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 596 NTDVAEAMASQIFGL-ITE-TTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+..+++.+++.+.+. .|. .....+.|+-++++.|++++++++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 455666666666652 333 223445566667777777777777766555
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.31 E-value=1.4e+02 Score=30.58 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC---CC--CCchhHHHHHHHHHhhhc
Q 002790 352 GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA---KV--VANSVTISGLLSVCAESA 426 (881)
Q Consensus 352 g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~~~~~~g 426 (881)
...++|+.-|.+..+..+..+ .-.-.+.-.+|..+.+.+++++.+..|.+|..- .+ .-+..+.+++++..+...
T Consensus 41 ~~p~~Al~sF~kVlelEgEKg-eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKG-EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred cCHHHHHHHHHHHHhcccccc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 355666666666655332000 001123344667778888888888888877421 11 234556777777777666
Q ss_pred hHHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---------------CHHHHHHHHH
Q 002790 427 ALNIGREIHGHVVRV-----SMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---------------DLITWNSMIS 486 (881)
Q Consensus 427 ~~~~a~~i~~~~~~~-----g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---------------d~~~~~~li~ 486 (881)
..+....+++.-++. +-..=-.+-..|...|...|++.+..+++.++.+. -...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666666666544321 11111123345667777788888888888776521 1246777778
Q ss_pred HHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhcCC--CCCh---hHHHHH
Q 002790 487 GYGMNGLGENALATFEEMIEAG-FKPDGVAFVAVLSACS-----HAGLVNEGRRIFDMMVREFRI--EPQM---EHYACM 555 (881)
Q Consensus 487 ~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~-----~~g~~~~A~~l~~~m~~~~~~--~p~~---~~~~~l 555 (881)
.|....+-.+-..++++.+.-. --|.+ ....+|+-|. +.|.+++|-.=|-+.-+.+.- .|.. --|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8887777777777787766432 23433 3445555554 567788776443333333321 2322 235566
Q ss_pred HHHHHHcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHH
Q 002790 556 VDLLGRAGL----LQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYM 619 (881)
Q Consensus 556 i~~~~~~g~----~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 619 (881)
.+++.+.|- -++|.- .+..|.......|+.+|.. ++..+-++++..-....-.++.+-.
T Consensus 279 ANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFIRe 341 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFIRE 341 (440)
T ss_pred HHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHHHH
Confidence 677776652 112211 1233556677788888764 4666666666655555555554433
No 336
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.28 E-value=1.9e+02 Score=32.36 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=98.7
Q ss_pred HHHHHHHHhCCCCChHH--HHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHh--HHHHHHHHHHcCCChhHHHHHHHHHH
Q 002790 49 QVHNQLIVTGANASAFL--AARVLSIYARFGRLFDARNVFETAPFDCKSSSL--LWNSILRVNVSNGLYENALKLYVKMR 124 (881)
Q Consensus 49 ~l~~~l~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~n~li~~~~~~g~~~~A~~l~~~m~ 124 (881)
++.+.+.+.|..|+... ..+.+...+..|+.+-+.-+++.-.. |+.. ...+.+...++.|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~--- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI---PDVKYPDIESELHDAVEEGDVKAVEELLD--- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---ccccCCCcccHHHHHHHCCCHHHHHHHHH---
Confidence 44556666787765432 33445555667777665555543221 2211 11234555667787766555443
Q ss_pred hCCCCC----CcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHhhcC
Q 002790 125 KLGVLG----DGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHI--VNELIGMYAKMGQMSDSFKLFDKVR 198 (881)
Q Consensus 125 ~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~--~~~Li~~~~~~g~~~~A~~l~~~m~ 198 (881)
.|... +..-.+.|..++ ..|+ .++.+.+.+.|..++... -...+...+..|+.+-+.-+++.-.
T Consensus 90 -~~~~~~~~~~~~g~tpL~~A~-~~~~--------~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~ 159 (413)
T PHA02875 90 -LGKFADDVFYKDGMTPLHLAT-ILKK--------LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159 (413)
T ss_pred -cCCcccccccCCCCCHHHHHH-HhCC--------HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 33221 111223333333 3343 455666677776655331 1234455567788877777766543
Q ss_pred CC---CeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 002790 199 VK---NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVT---WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGA 272 (881)
Q Consensus 199 ~~---~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t---y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 272 (881)
.. |..-++.+. ..+..|+.+ +++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 160 ~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 160 CLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 22 222333333 334455543 4444555665665432 124455455666654 34444556666553
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.28 E-value=68 Score=27.55 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVA 518 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 518 (881)
+..+...|++++|..+.+.+.-||...|-+|.. .+.|-.+++..-+.+|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345677889999999888888889988877654 45677777777777787776 665555544
No 338
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=68.64 E-value=12 Score=31.79 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHH
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILR 105 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~ 105 (881)
++-...+....+.|++.+..+-+++|.+.+++..|.++|+.++.++..+...|..++.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 4444445555666777777777777777777777777777666434334445554443
No 339
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.15 E-value=43 Score=28.70 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHH
Q 002790 179 GMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTW 240 (881)
Q Consensus 179 ~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty 240 (881)
..+...|++++|..+.+.+..||..+|-+|... +.|..+++..-+.+|...| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 344556666666666666666666666655443 4555555555555565555 4444443
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.07 E-value=27 Score=34.26 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=51.2
Q ss_pred HcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCCHHHH
Q 002790 561 RAGLLQEASDIVKNMPMEP--NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLI----TETTGSYMLLSNIYAASGRWEDA 634 (881)
Q Consensus 561 ~~g~~~eA~~l~~~m~~~p--d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~eA 634 (881)
+.|+ ++|.+.|-.+...| +......-+..|....|.++++.++-+++++. ..|+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4443 55666666663332 33334444455556778999999999988872 34688999999999999999887
Q ss_pred H
Q 002790 635 A 635 (881)
Q Consensus 635 ~ 635 (881)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.75 E-value=9.9 Score=24.48 Aligned_cols=30 Identities=10% Similarity=-0.015 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002790 585 GTLLNSCRMHKNTDVAEAMASQIFGLITET 614 (881)
Q Consensus 585 ~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 614 (881)
-.+..++.+.|++++|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345566777888888888888888877763
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.86 E-value=2.1e+02 Score=33.60 Aligned_cols=150 Identities=12% Similarity=0.042 Sum_probs=76.3
Q ss_pred HcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 490 MNGLGENALATFEEMIE-------AGFKPDGVAFVAVLSACSHAG-----LVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 490 ~~g~~~~A~~l~~~m~~-------~g~~pd~~t~~~ll~a~~~~g-----~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
...+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++.+.. +.| .|+...+ +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g-~~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELG-NPDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcC-CchHHHH--HHH
Confidence 34455666666665554 44 2223444444554432 4556666666655 222 2222222 222
Q ss_pred HHHH---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC
Q 002790 558 LLGR---AGLLQEASDIVKNMPMEPNAYVWGTLLNSCR----MHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGR 630 (881)
Q Consensus 558 ~~~~---~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (881)
.+.. ..+...|.++|......-.....-.+...+. ...+.+.|..+++++.+.+++.+..-......+.. ++
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-cc
Confidence 2221 1345677777776633323333333333322 33478888888888888774433222233333333 77
Q ss_pred HHHHHHHHHHHHhCCCc
Q 002790 631 WEDAAKVRISAKTKGLK 647 (881)
Q Consensus 631 ~~eA~~~~~~m~~~g~~ 647 (881)
++.+.-.+..+.+.|.+
T Consensus 413 ~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYE 429 (552)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 88777777777766543
No 343
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.60 E-value=13 Score=37.08 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 562 AGLLQEASDIVKNM-PMEPNAYV-WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 562 ~g~~~eA~~l~~~m-~~~pd~~~-~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
..+++.|+..+.+. .+.|.+.+ |..=+-.+.+..+++.+.+-..+++++.|......+.++..+.....+++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34455555544433 55566643 34444455667788888888888888888888888888888888888888888888
Q ss_pred HHHh
Q 002790 640 SAKT 643 (881)
Q Consensus 640 ~m~~ 643 (881)
+..+
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 7754
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.02 E-value=6.1 Score=36.66 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=50.8
Q ss_pred HHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCC
Q 002790 138 VIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFD 217 (881)
Q Consensus 138 ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~ 217 (881)
++..+.+.+.+... ...++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l----~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEEL----IEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGC----TCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHH----HHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcch
Confidence 45555666666666 55666666666566778888888888888777777777763332 333445555555555
Q ss_pred hhHHHHHHHHh
Q 002790 218 CDGALELFKRM 228 (881)
Q Consensus 218 ~~~A~~l~~~m 228 (881)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555554443
No 345
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.70 E-value=1.8e+02 Score=32.40 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=96.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchh--HHHHHHHHHH
Q 002790 107 NVSNGLYENALKLYVKMRKLGVLGDGFT--FPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVH--IVNELIGMYA 182 (881)
Q Consensus 107 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~--~~~~Li~~~~ 182 (881)
.++.|+.+-+ +.+.+.|..|+... ..+.+..++..++ .++.+.+.+.|..|+.. .....+...+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~--------~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRD--------SEAIKLLMKHGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCC--------HHHHHHHHhCCCCccccCCCcccHHHHHH
Confidence 3445555443 33444566655422 2223333344454 33455556666555432 1223445556
Q ss_pred hcCChHHHHHHHhhcCCCCee---hHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhH--HHHHHHHHHhcCChHHHH
Q 002790 183 KMGQMSDSFKLFDKVRVKNYI---SWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVT--WTSLLSSHARCGRLEETM 257 (881)
Q Consensus 183 ~~g~~~~A~~l~~~m~~~~~~---~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--y~~li~~~~~~g~~~~A~ 257 (881)
+.|+.+.+..+++.-...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 778888877777654321110 112233344455654 34444555665555432 223445556677765444
Q ss_pred HHHHHHHHcCCCCCH---HHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHH---HHHHHHHHHhcCCHHHHHHHHh
Q 002790 258 DLFDMMRKRGIEVGA---EAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFV---KNALICVYGKHGDVKVAQNLFS 331 (881)
Q Consensus 258 ~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~---~~~Li~~~~~~g~~~~A~~~~~ 331 (881)
.+ .+.|..++. .-.+.+..+ +..|+.+ +.+.+.+.|..++... ..+++...+..|+.+-+.-+++
T Consensus 153 ~L----l~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 153 LL----IDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred HH----HhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 33 344543332 222333333 3334433 3444555565544321 1234444556666666666655
Q ss_pred hccCCC
Q 002790 332 EIEEKN 337 (881)
Q Consensus 332 ~m~~~~ 337 (881)
.-..++
T Consensus 224 ~gad~n 229 (413)
T PHA02875 224 RGADCN 229 (413)
T ss_pred CCcCcc
Confidence 544333
No 346
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.17 E-value=98 Score=31.35 Aligned_cols=107 Identities=20% Similarity=0.159 Sum_probs=56.3
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 480 TWNSMISGYGM--NGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 480 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
.|...++||.. ++++++|.+++-.- .+.|+.. .-++.++...|+.+.|..+++... ..-.+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 34455566554 45566666655221 1222222 135666666777777777777653 11112223333333
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 002790 558 LLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHK 595 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g 595 (881)
. ..++.+.||..+.+....+-....+..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 3 566778888877777643322346666666655433
No 347
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.07 E-value=1.7e+02 Score=30.00 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=114.9
Q ss_pred CCCCchhHHHHHHHHH-HhcCCHHHHHHHHHhcccC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CC-
Q 002790 442 SMNKNILVQNGLLNMY-MKCGCLEEGHLVFEQIEKK-------DLITWNSMISGYGMNGLGENALATFEEMIEA---GF- 509 (881)
Q Consensus 442 g~~~~~~~~~~Li~~y-~~~g~~~~A~~~~~~m~~~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~- 509 (881)
+-+||+..-|..-+.- .+..++++|..-|++..+- .-.....+|..+.+.+++++.++.+++|+.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544322211 2334677788777776532 2334566788888888888888888887631 11
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc----CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC--C-----
Q 002790 510 -KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREF----RIEPQMEHYACMVDLLGRAGLLQEASDIVKNMP--M----- 577 (881)
Q Consensus 510 -~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~--~----- 577 (881)
.-...+.++++.-.+...+.+--..+++.-.+.. +-..-..+-.-|...|...|.+.+-.++++++. .
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1233466777666555555554444444322111 111112344567777877888877777777661 0
Q ss_pred C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCcchH----HHHHHHHHHcCCHHHHHHHH
Q 002790 578 E-------PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITETTGSY----MLLSNIYAASGRWEDAAKVR 638 (881)
Q Consensus 578 ~-------pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~----~~l~~~~~~~g~~~eA~~~~ 638 (881)
+ .-..+|..=|..|...++-.....+|++++.. .-|.|.+. .+=+.++.+.|+|++|..-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 0 11235666677788888888888999988765 22233222 23345677889999887543
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.31 E-value=22 Score=36.67 Aligned_cols=61 Identities=13% Similarity=-0.022 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.++.....|...|.+.+|.++.++++.++|-+...+..|+..|...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444456688999999999999999999999999999999999999998888888887754
No 349
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.88 E-value=59 Score=32.79 Aligned_cols=89 Identities=15% Similarity=0.031 Sum_probs=66.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCCHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 556 VDLLGRAGLLQEASDIVKNM---------PMEPNAYVWG-----------TLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m---------~~~pd~~~~~-----------~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
.+-+.+.|++.||..-|++. +.+|-..-|. ..-.++...|++-++++...+++...|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34456667777666655543 3445444443 223344678999999999999999999999
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+|+.-+.+.+..=+..+|.+=|.+..+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999999999999999888877664
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.52 E-value=9.4 Score=32.68 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHH
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILR 105 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~ 105 (881)
++-...+....+.|++.+..+-+++|.+.+++..|.++|+.++.++.+....|.-+++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3334444444556777777777777777777777777776665533333335555443
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.23 E-value=60 Score=31.27 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC----HHHHHHHHHHHH
Q 002790 597 TDVAEAMASQIFGLITETTGSYMLLSNIYAASGR----WEDAAKVRISAK 642 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~eA~~~~~~m~ 642 (881)
+++|+.-+++++.++|....++..++++|...+. ..+|.++|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4667778888889999999999999999987754 334444444443
No 352
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.73 E-value=4.4 Score=42.57 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=69.5
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 002790 561 RAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVR 638 (881)
Q Consensus 561 ~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 638 (881)
..|.+++|++.|... ...|. ...|.--.+.+.+.+....|++-+..+++++|+...-|-.-..+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345566666666554 33333 3344445566778888899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCC
Q 002790 639 ISAKTKGLKKVA 650 (881)
Q Consensus 639 ~~m~~~g~~~~~ 650 (881)
....+.++....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 999988876543
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=62.49 E-value=17 Score=24.80 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMI 505 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~ 505 (881)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666665554
No 354
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.14 E-value=2.6e+02 Score=31.03 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhH
Q 002790 205 WNMMFSGFALNFDCDGALELFKRME 229 (881)
Q Consensus 205 y~~li~~~~~~g~~~~A~~l~~~m~ 229 (881)
...+|+-|-..|+..+..+.++++-
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcC
Confidence 4567777777777777777776553
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.20 E-value=1.4e+02 Score=29.36 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=18.5
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 590 SCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 590 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
+|.+...+++|+.-|+++.+.+|.....
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 4555667777777777777777765433
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.90 E-value=28 Score=34.40 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
+.+..+..+.+.+.+++|+...++- +.+| |......++..++-.|++++|..-++-+-++.|.+.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3455567788888899988877654 5555 445677788888999999999988888888877654
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.83 E-value=94 Score=28.89 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=36.7
Q ss_pred CCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch
Q 002790 235 PNFVTWTSLLSSHARCGR-LEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH 289 (881)
Q Consensus 235 pd~~ty~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 289 (881)
.+..+|+.++.+.++..- --.+..+|.-|++.+.+++..-|..+|.+|.+....+
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 344567777777755555 4456677777777777777777777777777664433
No 358
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.54 E-value=34 Score=32.85 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002790 529 VNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGL----LQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAM 603 (881)
Q Consensus 529 ~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~----~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~ 603 (881)
+++|+.-|++.+ .+.|+ ..++.++..+|...+. ..+|.+ .+++|...
T Consensus 51 iedAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~-------------------------~F~kA~~~ 102 (186)
T PF06552_consen 51 IEDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEE-------------------------YFEKATEY 102 (186)
T ss_dssp HHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHH-------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHH-------------------------HHHHHHHH
Confidence 344444455554 56787 5777888877765542 122222 24567777
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 002790 604 ASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLK 647 (881)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~ 647 (881)
|+++...+|.+. .|..-+.+. ++|-++..++.+.+..
T Consensus 103 FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 103 FQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 777777788764 444444433 3466666666666543
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.45 E-value=20 Score=21.95 Aligned_cols=25 Identities=20% Similarity=0.003 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGLI 611 (881)
Q Consensus 587 Ll~~~~~~g~~~~A~~~~~~~~~~~ 611 (881)
+...+...++++.|...+++.++..
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3333444444444444444444433
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.01 E-value=3.2e+02 Score=30.91 Aligned_cols=48 Identities=10% Similarity=-0.070 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 528 LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
+.+.-.++..++.++.|..--...+.-+-.-|....++++|++++..+
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 344445555555544444444445555555555666666666666544
No 361
>PRK10941 hypothetical protein; Provisional
Probab=57.14 E-value=43 Score=34.91 Aligned_cols=62 Identities=15% Similarity=-0.038 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
..+.|-.++.+.++++.|.+..+.++...|+++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44566677899999999999999999999999998999999999999999999988877654
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.01 E-value=2.9e+02 Score=33.95 Aligned_cols=38 Identities=8% Similarity=0.012 Sum_probs=24.4
Q ss_pred HhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 002790 282 CADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGK 319 (881)
Q Consensus 282 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~ 319 (881)
+......+.....++++....-.++....+.++..|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34445566666777777666556666677777777765
No 363
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.95 E-value=20 Score=22.05 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 002790 553 ACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 553 ~~li~~~~~~g~~~eA~~l~~ 573 (881)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666665554
No 364
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.95 E-value=20 Score=26.85 Aligned_cols=32 Identities=6% Similarity=0.014 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 586 TLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 586 ~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
.+.-++.+.|++++|.+..+.+++.+|.|...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999998654
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.75 E-value=64 Score=32.36 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHH-------HHHHHHHHHhhc--CCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 587 LLNSCRMHKNTD-------VAEAMASQIFGL--ITE----TTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 587 Ll~~~~~~g~~~-------~A~~~~~~~~~~--~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
+...|+..++.+ .|...|+++.+. .|. .......++..+.+.|+.++|.+.|.++...+
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334455555533 445555555544 222 23567789999999999999999999988654
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.36 E-value=4.6e+02 Score=31.90 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=50.9
Q ss_pred HhcCCHHHHHHHHhhccC----CCh-------hHHHHHHH-HHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHH
Q 002790 318 GKHGDVKVAQNLFSEIEE----KNI-------VSWNALIT-SYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIG 385 (881)
Q Consensus 318 ~~~g~~~~A~~~~~~m~~----~~~-------~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~ 385 (881)
....++++|..++.+... ++. ..|+.+-. .....|++++|.++-+.....-......+..+.+.++..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345677777777666542 221 13444322 233456777777777666654332223445566666667
Q ss_pred HHHHCCChHHHHHHHHHHHHC
Q 002790 386 AFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 386 ~~~~~g~~~~A~~l~~~m~~~ 406 (881)
+..-.|++++|..+.++..+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 777777777777776665543
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.25 E-value=1.1e+02 Score=28.42 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=65.9
Q ss_pred HHHHHHhCCCCCh--HHHHHHHHHHHcCCChhHHHHHHhhCCCC------CCCCHhHHHHHHHHHHcCCC-hhHHHHHHH
Q 002790 51 HNQLIVTGANASA--FLAARVLSIYARFGRLFDARNVFETAPFD------CKSSSLLWNSILRVNVSNGL-YENALKLYV 121 (881)
Q Consensus 51 ~~~l~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~n~li~~~~~~g~-~~~A~~l~~ 121 (881)
...+.+.+..++. ...|+++...+..+++...+++++.+..- ...+-.+|++++.+.++... ---+..+|.
T Consensus 25 ~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 25 LPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 3445556666664 46778888888888888888888776431 12355678888888866665 334567778
Q ss_pred HHHhCCCCCCcchHHHHHHHHHcc
Q 002790 122 KMRKLGVLGDGFTFPLVIRACKFM 145 (881)
Q Consensus 122 ~m~~~g~~p~~~t~~~ll~a~~~~ 145 (881)
-|++.+.+++..-|..++.+|.+-
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 887777788888888888877665
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=54.27 E-value=76 Score=31.21 Aligned_cols=73 Identities=10% Similarity=-0.026 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc--CCCCChhHHHHHHHHHHHcCCHHHH
Q 002790 495 ENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREF--RIEPQMEHYACMVDLLGRAGLLQEA 568 (881)
Q Consensus 495 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~--~~~p~~~~~~~li~~~~~~g~~~eA 568 (881)
++|.+.|-++...+.--+...... +..|....+.+++++++-+..+-. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554443322222222 222333445555555555554322 1134455555555555555555544
No 369
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.12 E-value=63 Score=34.19 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 550 EHYACMVDLLGRAGLLQEASDIVKNM-P---MEPN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 550 ~~~~~li~~~~~~g~~~eA~~l~~~m-~---~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
.+|.-=.+-|.+..++..|...|.+. . ..|| .+.|+.-..+-...|++..++.-+.+++...|.+.-.|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444566688888999999988776 1 2233 4567666666677899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 002790 624 IYAASGRWEDAAKVRISA 641 (881)
Q Consensus 624 ~~~~~g~~~eA~~~~~~m 641 (881)
++....++++|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999998888776633
No 370
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.08 E-value=2.9e+02 Score=29.09 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCHhHHHHHHHHHHc--CCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchh
Q 002790 95 SSSLLWNSILRVNVS--NGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVH 172 (881)
Q Consensus 95 ~~~~~~n~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~ 172 (881)
|.+..++-+|+-|-- .+--++..+++.-+ .|+.++...-.+++.+..-.+ |..| ..
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal~l~n-------------------Gt~~-~t 166 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTALLLSN-------------------GTLP-AT 166 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHhC-------------------CCCC-HH
Confidence 455567777775532 22222222332222 256777776666666644222 2222 22
Q ss_pred HHHHHH-HHHHhcC-ChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhc
Q 002790 173 IVNELI-GMYAKMG-QMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARC 250 (881)
Q Consensus 173 ~~~~Li-~~~~~~g-~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~ 250 (881)
+++.|. .-+.+.| -..-|.++|..... ....|.+++.+-+.+.-+.-+++| +|+..|-......+...
T Consensus 167 vl~~L~~d~LVkeGi~l~F~~~lFk~~~~--Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~a 236 (412)
T KOG2297|consen 167 VLQSLLNDNLVKEGIALSFAVKLFKEWLV--EKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDA 236 (412)
T ss_pred HHHHHHHhhHHHHhHHHHHHHHHHHHHHh--hccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHh
Confidence 222222 2223333 12345566654431 123456666665555444444444 66666555544444443
Q ss_pred C
Q 002790 251 G 251 (881)
Q Consensus 251 g 251 (881)
|
T Consensus 237 g 237 (412)
T KOG2297|consen 237 G 237 (412)
T ss_pred h
Confidence 3
No 371
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.90 E-value=32 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 602 AMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..+++.++.+|.|...-..++..+...|++++|++.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44556667799999999999999999999999999988887754
No 372
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.33 E-value=1.6e+02 Score=33.97 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHCCChHHHHHHHHHHH
Q 002790 377 VISWSAVIGAFASNGRGEEALDLFRKMQ 404 (881)
Q Consensus 377 ~~~y~~li~~~~~~g~~~~A~~l~~~m~ 404 (881)
..-|..|-++..+.+++..|.+.|....
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3445555555555555555555555443
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.33 E-value=23 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 619 MLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 619 ~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..|+.+|.+.|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357899999999999999999888644
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.63 E-value=23 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
..|..++..|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999987765
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.54 E-value=2.2e+02 Score=31.46 Aligned_cols=52 Identities=8% Similarity=-0.038 Sum_probs=32.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 002790 488 YGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACS--HAGLVNEGRRIFDMMV 540 (881)
Q Consensus 488 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~A~~l~~~m~ 540 (881)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34567778888888887775 455444 3444444444 3445777777777665
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.09 E-value=2.7e+02 Score=27.89 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=34.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 483 SMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 483 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
..+..+.+.+...+|+...++-++.+ +.|.-+-..+++-+|-.|++++|..-++-..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34455566666677777666666552 3334455566666777777777766665554
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.87 E-value=1.8e+02 Score=25.37 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV 517 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 517 (881)
+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++..+| .|....|.
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-~~~~q~Fa 107 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-SPELQAFA 107 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-SHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667788888744444445667777766543 46777777777777776655 44444443
No 378
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=48.33 E-value=5.4e+02 Score=30.60 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=38.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHC
Q 002790 313 LICVYGKHGDVKVAQNLFSEIEE--KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASN 390 (881)
Q Consensus 313 Li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~ 390 (881)
....+.-+|+++.|.+.+-+... .+.+.+...+. ..|-+.-....-..+..... ..|....+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~---~~gLL~~~~~~~~~lls~~~---~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALA---YYGLLRVSDSSSAPLLSVDP---GDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHH---HTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHH---HcCCCCCCCccccceeeecC---CCCCCcCHHHHHHHHHHH
Confidence 34556678999999988888221 23333333222 22222211111122222111 112226678888888774
Q ss_pred ---CChHHHHHHHHHHHHC
Q 002790 391 ---GRGEEALDLFRKMQLA 406 (881)
Q Consensus 391 ---g~~~~A~~l~~~m~~~ 406 (881)
.++.+|++.|--+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 5678888888777544
No 379
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=48.17 E-value=1.6e+02 Score=30.57 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHCCChHHHHHHHHHHHHC--CCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH---
Q 002790 384 IGAFASNGRGEEALDLFRKMQLA--KVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYM--- 458 (881)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~--- 458 (881)
|++++..++|.+++...-+--+. .++|. ..-..|-.|.+.+....+.++-..-....-.-+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56666777777766654433221 12222 222222234455555544444444443322222333444444443
Q ss_pred --hcCCHHHHHHHH
Q 002790 459 --KCGCLEEGHLVF 470 (881)
Q Consensus 459 --~~g~~~~A~~~~ 470 (881)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 235555555444
No 380
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.80 E-value=13 Score=41.01 Aligned_cols=93 Identities=8% Similarity=0.022 Sum_probs=50.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCC
Q 002790 520 LSACSHAGLVNEGRRIFDMMVREFRIEPQMEHY-ACMVDLLGRAGLLQEASDIVKNM-PMEPNAY-VWGTLLNSCRMHKN 596 (881)
Q Consensus 520 l~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~-~~~~Ll~~~~~~g~ 596 (881)
.......+.++.|..++.+++ .+.|+-..| ..-..++.+.+++..|+.=..+. ...|... .|---..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 334455566777777777776 456653333 33335566666666665433332 4444322 33333344555566
Q ss_pred HHHHHHHHHHHhhcCCCCc
Q 002790 597 TDVAEAMASQIFGLITETT 615 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~ 615 (881)
+.+|...++......|.++
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHHHHhhhcCcCcH
Confidence 6666666666666666655
No 381
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.74 E-value=1.7e+02 Score=25.52 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcC
Q 002790 156 QIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEG 232 (881)
Q Consensus 156 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 232 (881)
..+.+.+...+- ....+.-.-+..+.+.|++++|...=.....||..+|-+|-.. +.|-.+++...+.++...|
T Consensus 26 ~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 26 NTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 555555544432 2222223333445566777777444344445666666555443 5666666666666665544
No 382
>PHA03100 ankyrin repeat protein; Provisional
Probab=46.56 E-value=4.2e+02 Score=30.17 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHhh
Q 002790 157 IVHNHVLQMGFQGNVHI--VNELIGMYAKMGQMSDSFKLFDK 196 (881)
Q Consensus 157 ~~~~~m~~~g~~~~~~~--~~~Li~~~~~~g~~~~A~~l~~~ 196 (881)
.+.+.+.+.|..++... ...-+...+..|+.+-+.-+++.
T Consensus 157 ~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ 198 (480)
T PHA03100 157 KILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN 198 (480)
T ss_pred HHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 34444455554433221 11233344445555555444443
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.35 E-value=50 Score=26.99 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=33.8
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHcCCHHHHHHH
Q 002790 593 MHKNTDVAEAMASQIFGLITETTG---SYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 593 ~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~eA~~~ 637 (881)
..++.++|+..++.+++..+..+. ++-.|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888887555443 444677788888999888876
No 384
>PRK12798 chemotaxis protein; Reviewed
Probab=46.13 E-value=4.5e+02 Score=29.10 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHHhcccC----CHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHH
Q 002790 460 CGCLEEGHLVFEQIEKK----DLITWNSMISGYGM-NGLGENALATFEEMIEAGFKPDGV----AFVAVLSACSHAGLVN 530 (881)
Q Consensus 460 ~g~~~~A~~~~~~m~~~----d~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~ 530 (881)
.|+.++|.+.+..+... ....|-.|+.+-.. ..++.+|+++|++..-. .|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68888888888887643 45567777766554 56789999999987653 34432 3334444567889999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHH-HHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002790 531 EGRRIFDMMVREFRIEPQMEHYA-CMVDLLGRAG---LLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQ 606 (881)
Q Consensus 531 ~A~~l~~~m~~~~~~~p~~~~~~-~li~~~~~~g---~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~ 606 (881)
++..+-......+.-.|-..-|. .+...+.+.+ ..+.-.+++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88877777766666666543332 2333343333 3445556666664332345888888888999999999999999
Q ss_pred HhhcCCCCcchHHHHHHHHH-----HcCCHHHHHHHHHHH
Q 002790 607 IFGLITETTGSYMLLSNIYA-----ASGRWEDAAKVRISA 641 (881)
Q Consensus 607 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~eA~~~~~~m 641 (881)
+..+..+ ...-...+..|. -..+.+++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9988432 222223333333 335677777766643
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.92 E-value=48 Score=27.07 Aligned_cols=47 Identities=6% Similarity=0.076 Sum_probs=23.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHH
Q 002790 525 HAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDI 571 (881)
Q Consensus 525 ~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l 571 (881)
.....++|+..|....++..-.|+ ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666544222222 23445555555555555555443
No 386
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.37 E-value=1e+03 Score=32.85 Aligned_cols=310 Identities=13% Similarity=0.026 Sum_probs=170.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----cCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHH
Q 002790 312 ALICVYGKHGDVKVAQNLFSEI----EEKN--IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIG 385 (881)
Q Consensus 312 ~Li~~~~~~g~~~~A~~~~~~m----~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~ 385 (881)
.|..+=.+++.+..|...++.- .+.+ ..-+-.+...|..-++++....+...... .| ....-|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-------~~---sl~~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-------DP---SLYQQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-------Cc---cHHHHHH
Confidence 3444556788888888888872 2222 22344455578888888877666653111 11 2233455
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHH-HHHHHHhcCCHH
Q 002790 386 AFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNG-LLNMYMKCGCLE 464 (881)
Q Consensus 386 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~-Li~~y~~~g~~~ 464 (881)
-....|++..|...|+.+.+.+ ++...+++.++......+.++......+...... .+....+++ =+.+--+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 5677899999999999998664 3346788888887777777777666444433322 222222222 244446777777
Q ss_pred HHHHHHHhcccCCHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH--
Q 002790 465 EGHLVFEQIEKKDLITWNSM--ISGYGMNG--LGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM-- 538 (881)
Q Consensus 465 ~A~~~~~~m~~~d~~~~~~l--i~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~-- 538 (881)
....... ..+..+|... .....+.. +.-.-.+..+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1536 ~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH 1604 (2382)
T KOG0890|consen 1536 LLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLH 1604 (2382)
T ss_pred hhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHH
Confidence 7666655 4455566554 22222222 2212223333333321111 1222222222222211111
Q ss_pred --------HHHhcCCCCChhHH-HH--HHHHHHHcCCHHHHHHHH---HhC----CCCC-----CHHHHHHHHHHHHHcC
Q 002790 539 --------MVREFRIEPQMEHY-AC--MVDLLGRAGLLQEASDIV---KNM----PMEP-----NAYVWGTLLNSCRMHK 595 (881)
Q Consensus 539 --------m~~~~~~~p~~~~~-~~--li~~~~~~g~~~eA~~l~---~~m----~~~p-----d~~~~~~Ll~~~~~~g 595 (881)
.....++.++..+. +. ...-+.+.+..-.+.+-+ ++. ..+| -..+|......++..|
T Consensus 1605 ~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1605 LLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred HHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 11112344432111 11 111122222222222222 211 1122 2458999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 596 NTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
.++.|....-.+.+..+ +..+.-.+..+-+.|+...|+.++++-.+...
T Consensus 1685 ~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99999988887777664 46888899999999999999999998886553
No 387
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.83 E-value=4.1e+02 Score=28.27 Aligned_cols=71 Identities=10% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHH-HHHCCChHHHHHHHHHHHHCCCCC
Q 002790 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGA-FASNGRGEEALDLFRKMQLAKVVA 410 (881)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p 410 (881)
.+-....-||+-|+.+.|++.+++..+..+..+.+.|++.+..-+.. |....-..+-++..+.+.+.|...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh
Confidence 45556677888888888888887776655444455665555443322 222223344444445555555443
No 388
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=44.55 E-value=6.1e+02 Score=30.13 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 525 HAGLVNEGRRIFDMMVREFRIEPQ-------MEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 525 ~~g~~~~A~~l~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
-.+++..|.+..+.+.+...-.|+ +.++....-.+-..|+++.|+..|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457788888888888754332222 2222223333446788999999997
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.12 E-value=5.3e+02 Score=29.32 Aligned_cols=177 Identities=11% Similarity=0.165 Sum_probs=106.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH
Q 002790 303 FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW 380 (881)
Q Consensus 303 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y 380 (881)
-+.|....-+++..++.+-+..-.+.+-.+|.. .+-..|..++.+|..+ ..++-..+|+++.+.. -.|++.-
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-----fnDvv~~ 135 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-----FNDVVIG 135 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-----chhHHHH
Confidence 345555666777777777777777777777765 4556777888888877 5677778888777744 2344444
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCC--c---hhHHHHHHHHHhhhchHHHHHHHHHHHHH-cCCCCchhHHHHHH
Q 002790 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVA--N---SVTISGLLSVCAESAALNIGREIHGHVVR-VSMNKNILVQNGLL 454 (881)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~-~g~~~~~~~~~~Li 454 (881)
..|..-|-+ ++..++...|.+....-++. + ...|.-+.... ..+.+....+...+.+ .|...-...+..+-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 444444444 77777777777775442210 0 01122222111 2344455555555533 45444556666666
Q ss_pred HHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHH
Q 002790 455 NMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGY 488 (881)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~ 488 (881)
.-|....++++|.+++..+.+. |+..-..++.-+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 7888888899999988877543 444444444433
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.81 E-value=25 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=25.9
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 002790 109 SNGLYENALKLYVKMRKLGVLGDGFTFPLVIRAC 142 (881)
Q Consensus 109 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 142 (881)
..|.-..|..+|++|++.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34666789999999999999998 577887765
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.54 E-value=4e+02 Score=27.67 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHH
Q 002790 305 DYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVI 384 (881)
Q Consensus 305 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li 384 (881)
-|......+...|.+.|++.+|+..|-.-.+++...+..++..+...|...++-- ..-. .+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl------------------fi~R-aV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL------------------FIAR-AV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH------------------HHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH------------------HHHH-HH
Confidence 4566777888899999999999988766544444444334444444444333311 1111 22
Q ss_pred HHHHHCCChHHHHHHHHHHHHC
Q 002790 385 GAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
-.|...++...|...+....+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 3456677788888877766544
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.42 E-value=1.5e+02 Score=26.07 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 002790 100 WNSILRVNVSNGLYENALKLYVKMRK 125 (881)
Q Consensus 100 ~n~li~~~~~~g~~~~A~~l~~~m~~ 125 (881)
|..++.-|..+|.+++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999999877
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.39 E-value=53 Score=23.48 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=13.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 002790 484 MISGYGMNGLGENALATFEEMIEA 507 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~ 507 (881)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345555566666666666665543
No 394
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.18 E-value=4.8e+02 Score=28.57 Aligned_cols=128 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----------CC--
Q 002790 510 KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM----------PM-- 577 (881)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m----------~~-- 577 (881)
.++-.........+....+++.-..++++- .--+.++-.+.+.+.+.|+.+.|.+++++. ..
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~------PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~ 80 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLLQKN------PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP 80 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred ---C-------------CCHHHHHHHHHH---HHHcCCHHHHHHHHHHHhhcCCC-CcchHHHHHHHHH-HcCCHHHHHH
Q 002790 578 ---E-------------PNAYVWGTLLNS---CRMHKNTDVAEAMASQIFGLITE-TTGSYMLLSNIYA-ASGRWEDAAK 636 (881)
Q Consensus 578 ---~-------------pd~~~~~~Ll~~---~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~eA~~ 636 (881)
. -|...|.++..- +.+.|-+..|.++++-+..++|. ||......++.|+ ++++++--++
T Consensus 81 ~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~ 160 (360)
T PF04910_consen 81 FRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID 160 (360)
T ss_pred hhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH
Q ss_pred HHHHHHh
Q 002790 637 VRISAKT 643 (881)
Q Consensus 637 ~~~~m~~ 643 (881)
+.+....
T Consensus 161 ~~~~~~~ 167 (360)
T PF04910_consen 161 FSESPLA 167 (360)
T ss_pred HHHhHhh
No 395
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.40 E-value=4.5e+02 Score=27.71 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHH
Q 002790 477 DLITWNSMISGYGMNGLGENAL 498 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~ 498 (881)
...+|..|+.+++..|+.+-.+
T Consensus 320 hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHH
Confidence 3457888999999999877554
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.92 E-value=71 Score=36.32 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=70.9
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 002790 524 SHAGLVNEGRRIFDMMVREFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PM-EPNAYVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 524 ~~~g~~~~A~~l~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m-~~-~pd~~~~~~Ll~~~~~~g~~~~ 599 (881)
.-.|+...|...+.... ...|- .+....|...+.+.|...+|..++.+. .+ ...+.++..+.+++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34577778887777665 34453 344556677777778888888877654 11 2234577778888888889999
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHH
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
|++.++.+..+.|.++..-+.|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999998888887776665554
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.46 E-value=4.4e+02 Score=27.32 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=46.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002790 445 KNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACS 524 (881)
Q Consensus 445 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 524 (881)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36778888889999999999998877655444333332233332333332222 222222223 355
Q ss_pred ccCCHHHHHHHHHHHHHh
Q 002790 525 HAGLVNEGRRIFDMMVRE 542 (881)
Q Consensus 525 ~~g~~~~A~~l~~~m~~~ 542 (881)
-.+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 578888888888777644
No 398
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.84 E-value=72 Score=28.64 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=26.1
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCC
Q 002790 52 NQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKS 95 (881)
Q Consensus 52 ~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 95 (881)
..+....+.|++.+-..-++++.+-+++..|.++|+.++.++.+
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 33444455666666666666666666666666666665543333
No 399
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.57 E-value=7.9e+02 Score=30.04 Aligned_cols=179 Identities=16% Similarity=0.106 Sum_probs=93.5
Q ss_pred HhcCCHHHHHHHHHhccc--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHH--HHH
Q 002790 458 MKCGCLEEGHLVFEQIEK--------KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVA---FVAVLS--ACS 524 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~--------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t---~~~ll~--a~~ 524 (881)
...|++++|.++-+.... ..++.+..+..+..-.|++++|..+.++..+..-+-+... +..+.. .+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345777777766655432 2566777777777788889888888776655322223322 222222 244
Q ss_pred ccCC--HHHHHHHHHHHHHhcCC-CC----ChhHHHHHHHHHHHcCCHHHHHHH----HHhCC-CCCCH--H--HHHHHH
Q 002790 525 HAGL--VNEGRRIFDMMVREFRI-EP----QMEHYACMVDLLGRAGLLQEASDI----VKNMP-MEPNA--Y--VWGTLL 588 (881)
Q Consensus 525 ~~g~--~~~A~~l~~~m~~~~~~-~p----~~~~~~~li~~~~~~g~~~eA~~l----~~~m~-~~pd~--~--~~~~Ll 588 (881)
..|. ..+....|........- .| -..++..+..++.+ ++.+..- ++-.. ..|.. . .+..|.
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 5563 33333334333322111 11 12344444444444 3333322 22211 11221 1 222566
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc--CCCCcch------HHHHHHHHHHcCCHHHHHHHHHH
Q 002790 589 NSCRMHKNTDVAEAMASQIFGL--ITETTGS------YMLLSNIYAASGRWEDAAKVRIS 640 (881)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~------~~~l~~~~~~~g~~~eA~~~~~~ 640 (881)
......|+.+.|....+++..+ .+. ..+ +..-.......|+.++|.....+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 6678899999999999988766 332 222 12223334467888888777664
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.30 E-value=4.8e+02 Score=27.42 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHH
Q 002790 354 CDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFR 401 (881)
Q Consensus 354 ~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~ 401 (881)
..+|+++|.-+..+.+ -.++-+.++..+-...+..+|...+.
T Consensus 149 s~KA~ELFayLv~hkg------k~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHKG------KEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhcC------CcccHhHHHHHHccccchhhHHHHHH
Confidence 3567777777776442 22444555666666666666655543
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.16 E-value=48 Score=20.85 Aligned_cols=29 Identities=3% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 595 KNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 595 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788888899888888877777766554
No 402
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=4.8e+02 Score=27.25 Aligned_cols=71 Identities=10% Similarity=-0.029 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHH-HHHHHHHCCChHHHHHHHHHHHHCCCC
Q 002790 339 VSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSA-VIGAFASNGRGEEALDLFRKMQLAKVV 409 (881)
Q Consensus 339 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~-li~~~~~~g~~~~A~~l~~~m~~~g~~ 409 (881)
..|..+..-|++.++.+.+.++.++..+.....+.+.|+...-+ |.-.|....-.++-++..+.|.+.|..
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 45666677777777777777776666554432222333322111 111222222245555555556555543
No 403
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.30 E-value=3.7e+02 Score=30.83 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC--CHHHHH---HHHHHHHHcCChHHHHHHHHHHH
Q 002790 451 NGLLNMYMKCGCLEEGHLVFEQIEKK--DLITWN---SMISGYGMNGLGENALATFEEMI 505 (881)
Q Consensus 451 ~~Li~~y~~~g~~~~A~~~~~~m~~~--d~~~~~---~li~~~~~~g~~~~A~~l~~~m~ 505 (881)
..|+.-|.+.+++++|..++..|.=. ....|. .+.+.+.+..-.++.+..++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35677899999999999999888632 223333 33333444433444444455444
No 404
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.90 E-value=47 Score=39.56 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=72.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 002790 491 NGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASD 570 (881)
Q Consensus 491 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 570 (881)
..++++.+.+.+.-.--| .++|.-+-+.|-.+-|+.+.+.-...+ +....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 345666655444332222 233444556677777776665443232 23456888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 571 IVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 571 l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
.-++.. |..+|..|.......|+.+-|+..|++.... .-|...|.-.|+.++-.+..+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHH
Confidence 888776 6788888988888889998888888876543 233334445555555444433
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.09 E-value=72 Score=24.71 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002790 218 CDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKR 266 (881)
Q Consensus 218 ~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 266 (881)
.++..++++.++.. .-|-.-.-.+|.+|.+.|++++|.+.++++.+.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445555555433 344444556778888888888888877776543
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.82 E-value=1.7e+02 Score=26.42 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 002790 496 NALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMV 556 (881)
Q Consensus 496 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li 556 (881)
+..+-+..+....+.|+......-+++|.+.+++..|.++|+-++.+ +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34445566666778999999999999999999999999999998744 333333565554
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.07 E-value=73 Score=33.41 Aligned_cols=43 Identities=9% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002790 233 LEPNFVT-WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAI 275 (881)
Q Consensus 233 ~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 275 (881)
+.||..+ |+..|....+.|++++|+.++++.++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3456665 678888888888888888888888888765433333
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.98 E-value=1.1e+02 Score=23.78 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 512 DGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
|..--..++.++...|++++|.++.+++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445555555555555555555444
No 409
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.90 E-value=9.8e+02 Score=30.03 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHH-HHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002790 446 NILVQNGLLNMYMKCGCLEEGH-LVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACS 524 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~-~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 524 (881)
+..+-.+.+.++.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+ .|+...-...+.++.
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALT 863 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 4444455555555555543332 22333334444444445555555543 345455555543 455555555555665
Q ss_pred ccCCHHHHHHHHHHHH
Q 002790 525 HAGLVNEGRRIFDMMV 540 (881)
Q Consensus 525 ~~g~~~~A~~l~~~m~ 540 (881)
+......+...+....
T Consensus 864 ~~~~~~~a~~~L~~al 879 (897)
T PRK13800 864 RWPGDPAARDALTTAL 879 (897)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 5432334455554444
No 410
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.64 E-value=7.1e+02 Score=28.32 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc
Q 002790 553 ACMVDLLGRAGLLQEASDIVKNMPM--EPNAYVWGTLLNSC--RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628 (881)
Q Consensus 553 ~~li~~~~~~g~~~eA~~l~~~m~~--~pd~~~~~~Ll~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (881)
+.+++-+.+.|-..+|.+.+..... +|+...|..++..- ....+..-+..+|+.+....-.++..|.....--...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 4556666666667777777766622 23444555555442 2223355566666666554335555555554444455
Q ss_pred CCHHHHHHHHHH
Q 002790 629 GRWEDAAKVRIS 640 (881)
Q Consensus 629 g~~~eA~~~~~~ 640 (881)
|+.+.+-.++.+
T Consensus 544 g~~en~~~~~~r 555 (568)
T KOG2396|consen 544 GRPENCGQIYWR 555 (568)
T ss_pred CCcccccHHHHH
Confidence 555555544443
No 411
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=35.37 E-value=3.5e+02 Score=28.16 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH-
Q 002790 485 ISGYGMNGLGENALATFEEMIEA--GFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGR- 561 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~- 561 (881)
|.+++..+++.+++...-+--+. .++|. .....|--|++.+.+..+.++-....+..+ .-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 55666666666665554333221 23333 333344446777777777777666663211 1113336666555543
Q ss_pred ----cCCHHHHHHHH
Q 002790 562 ----AGLLQEASDIV 572 (881)
Q Consensus 562 ----~g~~~eA~~l~ 572 (881)
.|.++||+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666666
No 412
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.81 E-value=1.6e+02 Score=27.27 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHH
Q 002790 565 LQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWE 632 (881)
Q Consensus 565 ~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (881)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|...-...+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356777777775 34444555566778999999999999999999999988888888887776544
No 413
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.50 E-value=64 Score=32.28 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+.++.+.+.+++.++.++.|.....|..++....++|+++.|.+.|++..+-
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 45677788888888888888888888888888888888888888888777664
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.24 E-value=1.2e+02 Score=25.62 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=34.8
Q ss_pred HHHcCCHHHHHHHHHHHhhc----CCCC-----cchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 591 CRMHKNTDVAEAMASQIFGL----ITET-----TGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~----~p~~-----~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
..+.||+..|.+.+.+.... .... ......++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777776666555443 1111 22344677888899999999999988765
No 415
>PF15122 TMEM206: TMEM206 protein family
Probab=33.94 E-value=21 Score=35.27 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.1
Q ss_pred cccCCCCcchhHHHHHHH
Q 002790 854 IATNSRNTSIGIILGVIA 871 (881)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~ 871 (881)
|.+||||+ |||+-||..
T Consensus 247 iTanpWs~-ia~lCGvFl 263 (298)
T PF15122_consen 247 ITANPWST-IAILCGVFL 263 (298)
T ss_pred hhCCcHHH-HHHHHHHHH
Confidence 46899996 899999864
No 416
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.70 E-value=3.6e+02 Score=27.42 Aligned_cols=79 Identities=5% Similarity=-0.077 Sum_probs=35.0
Q ss_pred hcCCHHHHHHHHHhcc--cCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHH
Q 002790 459 KCGCLEEGHLVFEQIE--KKDL-ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVA-FVAVLSACSHAGLVNEGRR 534 (881)
Q Consensus 459 ~~g~~~~A~~~~~~m~--~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~A~~ 534 (881)
...+++.|...+.+.. .|++ .-|..-+-.+.+..+++.+.+=-++.++ +.||.+- ...+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3344555555544432 2333 2334444445555555555544444443 2444442 2223333344444555555
Q ss_pred HHHHH
Q 002790 535 IFDMM 539 (881)
Q Consensus 535 l~~~m 539 (881)
.+++.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55444
No 417
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.02 E-value=1.4e+02 Score=31.41 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=23.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHH
Q 002790 490 MNGLGENALATFEEMIEAGFKPDGV---AFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 490 ~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
+.|+..+|.+.|+.+.+. .|-.. ....++.+|.....+.+...++.+
T Consensus 287 klGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666665543 22111 233455555555544444444433
No 418
>PHA02977 hypothetical protein; Provisional
Probab=32.98 E-value=15 Score=32.90 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=31.7
Q ss_pred cCCCccceeeeccccccccCCccCccchhcHHHHHHHHHHHhhccchhhhccchhhhhcccCcccccccCCCCcchhH
Q 002790 788 NDSPHGLVLLRGLKVFDNFCNVTDTKQFMSVEELALAIMREIRGENAVRSALPALVFTCSTSLGCAIATNSRNTSIGI 865 (881)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (881)
..|+.|--.+-.||+-|++ +.+ |..|--.|=+.---.|-..+.||||.||.|
T Consensus 118 elga~g~avvmkle~sddl--------------------kal------rnvl~n~vp~pkdifg~i~~d~~w~phiti 169 (201)
T PHA02977 118 ELGAKGCAVVMKLEASDDL--------------------KAL------RNVLFNAVPCPKDIFGDILSDNPWCPHITI 169 (201)
T ss_pred hhCcCccEEEEEEEechHH--------------------HHH------HHHhhcccCCcHHhhcccccCCCCCCceEE
Confidence 4688888888899988863 112 222222222222334555689999999865
No 419
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.61 E-value=4.9e+02 Score=25.53 Aligned_cols=112 Identities=10% Similarity=0.120 Sum_probs=62.9
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 327 QNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 327 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
+.+.++.+++..+.|..+...-++.-..+++-+.+-- ..--++|..|-+.-+|.+..++++.|.+.
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG--------------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG--------------RIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455666666666655444443332211 12235667777888888888888888655
Q ss_pred CCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 002790 407 KVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQI 473 (881)
Q Consensus 407 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m 473 (881)
.+.-+ . +.++... .+..+.-...|.-...+.++|.+|.|..++++-
T Consensus 162 ~i~ft-----~-LKGL~g~---------------e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 162 QIHFT-----S-LKGLTGP---------------EKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hhhhh-----h-ccCccCc---------------cccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 33211 1 1111110 112334455666777888899999998888753
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.50 E-value=3.6e+02 Score=32.00 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHhccc-CCHH----------HHHHHHHHHHHcCChHH
Q 002790 431 GREIHGHVVRVSMNKNI---LVQNGLLNMYMKCGCLEEGHLVFEQIEK-KDLI----------TWNSMISGYGMNGLGEN 496 (881)
Q Consensus 431 a~~i~~~~~~~g~~~~~---~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~d~~----------~~~~li~~~~~~g~~~~ 496 (881)
-..++.+|+.+--.|++ .+...++-.|....+++...++.+.++. ||.. .|.--++---+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 34455666654434443 4455566667777778877777776653 2211 12111111123467778
Q ss_pred HHHHHHHHHHc--CCCCCHHH-----HHHH--HHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC-HH
Q 002790 497 ALATFEEMIEA--GFKPDGVA-----FVAV--LSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGL-LQ 566 (881)
Q Consensus 497 A~~l~~~m~~~--g~~pd~~t-----~~~l--l~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~ 566 (881)
|+...-.|.+. .+.||... |.-+ -+.|...+..+.|.++|++.- .+.|....--.+.-.+..+|+ ++
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 88877777654 25677543 2221 123445566778888888765 667764433233333333332 22
Q ss_pred HHHHHHHhC--------CCCCCH----HHH--HHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002790 567 EASDIVKNM--------PMEPNA----YVW--GTLLNSCRMHKNTDVAEAMASQIFGLITET 614 (881)
Q Consensus 567 eA~~l~~~m--------~~~pd~----~~~--~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 614 (881)
...++ +.+ +.+-.. ..| ...+.+-.-.+|+.+|++..++|.++.||.
T Consensus 339 ns~El-q~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 339 NSLEL-QQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHH-HHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 11111 111 111000 011 233455566789999999999999998874
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.28 E-value=54 Score=29.81 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=24.7
Q ss_pred hCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHH
Q 002790 214 LNFDCDGALELFKRMELEGLEPNFVTWTSLLSS 246 (881)
Q Consensus 214 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~ 246 (881)
..|.-..|..+|++|.+.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 45667789999999999998888 57777754
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.19 E-value=1.5e+02 Score=28.69 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=42.5
Q ss_pred hhHHHHHHhhCCCCCCCC-Hh-------HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCC
Q 002790 79 LFDARNVFETAPFDCKSS-SL-------LWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGS 147 (881)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~-~~-------~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 147 (881)
++.|+-+|+.+.+..+++ .. .--..+.+|.++|.+++|.+++++... .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 678888998877633332 11 123345678899999999999998876 4555555555544444443
No 423
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.12 E-value=5.3e+02 Score=25.49 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc--CCC---CcchHHHHHHHH
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGL--ITE---TTGSYMLLSNIY 625 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~---~~~~~~~l~~~~ 625 (881)
|..++....+....+++.++.+++-++ .|| ++..|...+.++
T Consensus 142 W~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~ 188 (199)
T PF04090_consen 142 WILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCH 188 (199)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 444444444445566677777777776 454 455555544443
No 424
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.90 E-value=4.5e+02 Score=26.57 Aligned_cols=108 Identities=10% Similarity=0.036 Sum_probs=64.3
Q ss_pred cCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH-H
Q 002790 507 AGFKPDGVAFVAVLSACSH--AGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAY-V 583 (881)
Q Consensus 507 ~g~~pd~~t~~~ll~a~~~--~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~-~ 583 (881)
.+++|. |...+.++.. .+++++|.+.+-.- .+.|+ .-.-++..+...|+.+.|+.+++.++-.++.. .
T Consensus 73 f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~ 143 (226)
T PF13934_consen 73 FGIPPK---YIKFIQGFWLLDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA 143 (226)
T ss_pred hCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH
Confidence 345544 5555666554 45677777777322 23333 22347788888999999999999985443333 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
...++.. ..++.+.+|..+.+...+.. ....+..++..+.
T Consensus 144 ~~~~~~~-La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 144 LTLYFVA-LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHH
Confidence 3333333 66788888888777654421 1234444554444
No 425
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.77 E-value=2.6e+02 Score=23.46 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=21.4
Q ss_pred hcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHH
Q 002790 183 KMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGA 221 (881)
Q Consensus 183 ~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A 221 (881)
..|+.+.|.++++.++ +....|...+.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455666666666666 5555566666655555544333
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.58 E-value=3.7e+02 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=12.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 002790 380 WSAVIGAFASNGRGEEALDLFRKMQL 405 (881)
Q Consensus 380 y~~li~~~~~~g~~~~A~~l~~~m~~ 405 (881)
|..++.-|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444445555544444443
No 427
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.53 E-value=3.7e+02 Score=23.44 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCC-Ch-hHHHHHHHHHHhCC
Q 002790 67 ARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNG-LY-ENALKLYVKMRKLG 127 (881)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g-~~-~~A~~l~~~m~~~g 127 (881)
..++.-|...|++++|.+.+.++........ .-..+|......+ .. +....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~-vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHE-VVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHH-HHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 4467778888999999999998875211122 2233444444442 23 33446666666554
No 428
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.49 E-value=3.9e+02 Score=24.14 Aligned_cols=44 Identities=11% Similarity=0.321 Sum_probs=34.4
Q ss_pred hHHHHHHHHhHHcCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHH
Q 002790 219 DGALELFKRMELEGLEPNFV-TWTSLLSSHARCGRLEETMDLFDM 262 (881)
Q Consensus 219 ~~A~~l~~~m~~~g~~pd~~-ty~~li~~~~~~g~~~~A~~l~~~ 262 (881)
+.+.++|..|...|+--... -|..-...+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 38899999998888765544 477788888889999999998865
No 429
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.81 E-value=5.8e+02 Score=25.18 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=27.0
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002790 455 NMYMKCGCLEEGHLVFEQIEKKDLIT--WNSMISGYGMNGLGENALATFEEMIEAG 508 (881)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~m~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 508 (881)
......|.+++|.+.++....++-.. ...-.+.+...|+.++|..-|++.++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34445555555555555555442221 2222344555555566666555555543
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.58 E-value=2.7e+02 Score=27.08 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=16.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHH
Q 002790 556 VDLLGRAGLLQEASDIVKNMPMEPNAYVW 584 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m~~~pd~~~~ 584 (881)
+-.|.+.|.+++|.+++++.-..|+....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 34466666666666666666334444433
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.22 E-value=2.7e+02 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=13.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc
Q 002790 589 NSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
......|+.++|...+++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3345566666666666666554
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.35 E-value=6.4e+02 Score=27.86 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=38.7
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHH--HcCCHHHHHHHHHhCC
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQME--HYACMVDLLG--RAGLLQEASDIVKNMP 576 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~~~--~~~~li~~~~--~~g~~~eA~~l~~~m~ 576 (881)
.+.+.+++..|.++++.+... +.++.. .|..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345788999999999999854 555544 4555555554 5678889999998763
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.26 E-value=7.3e+02 Score=25.86 Aligned_cols=77 Identities=12% Similarity=-0.072 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-------------
Q 002790 567 EASDIVKNMPMEPNAYVWGTLLNSCRM----HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG------------- 629 (881)
Q Consensus 567 eA~~l~~~m~~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 629 (881)
.|...+.++...-+......|...|.. ..|.++|...|+++.+... ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 566666665322244444444433322 3478888888888887765 44555555 555555
Q ss_pred --CHHHHHHHHHHHHhCCC
Q 002790 630 --RWEDAAKVRISAKTKGL 646 (881)
Q Consensus 630 --~~~eA~~~~~~m~~~g~ 646 (881)
+...|...+......|.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66777777776666553
No 434
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.03 E-value=2e+02 Score=20.89 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=14.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002790 249 RCGRLEETMDLFDMMRKRGIEVGAEAIAVV 278 (881)
Q Consensus 249 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 278 (881)
+.|-..++..++++|.+.|+.-+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 444444555555555555554444444333
No 435
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.00 E-value=1.8e+02 Score=28.40 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 576 PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 576 ~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
...|++.+|..++..+...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4568899999999999999999999999999988888
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.87 E-value=2.4e+02 Score=33.35 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH----------HHHHHHHHccCCHHHHHHHHHHHHHh-cCCC
Q 002790 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAF----------VAVLSACSHAGLVNEGRRIFDMMVRE-FRIE 546 (881)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~----------~~ll~a~~~~g~~~~A~~l~~~m~~~-~~~~ 546 (881)
..+...++-.|....+++..+++.+.+... ||..-+ .-.++---+-|+-+.|+...-.+.++ -.+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 345666777788888888888888888763 543222 11122222446777787766655543 3456
Q ss_pred CChh-----HHHHH--HHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 002790 547 PQME-----HYACM--VDLLGRAGLLQEASDIVKNM-PMEPNAY 582 (881)
Q Consensus 547 p~~~-----~~~~l--i~~~~~~g~~~eA~~l~~~m-~~~pd~~ 582 (881)
||.. +|.-+ -..|..++..+.|.+.|++. ..+|...
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 6643 22211 12344556677778888776 5566554
No 437
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.63 E-value=3.3e+02 Score=22.75 Aligned_cols=43 Identities=5% Similarity=0.041 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 002790 156 QIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR 198 (881)
Q Consensus 156 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 198 (881)
.++++.....|+..|+.+|..+++...-+=..+...++++.|.
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4677888888888888888888888877777777777777764
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.34 E-value=8.2e+02 Score=26.17 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=45.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHh---cCCCCChhHHHHHHHH-H----HHcCCHHHHHHHHHhCC---CCCCHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVRE---FRIEPQMEHYACMVDL-L----GRAGLLQEASDIVKNMP---MEPNAYV 583 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~---~~~~p~~~~~~~li~~-~----~~~g~~~eA~~l~~~m~---~~pd~~~ 583 (881)
.......-||+.|+-+.|.+.+.+..++ .|.+.|+..+..-+.. | .-...+++|..++++-+ .+....+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4455555677777777777776655432 2444554433322111 1 22334556666666553 1111223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
|..+- |....++.+|-.++-..+.-
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 33222 23344666666666555444
No 439
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.11 E-value=2.2e+02 Score=20.64 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002790 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLS 521 (881)
Q Consensus 489 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 521 (881)
.+.|-.+++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666677777777777777766666665554
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.07 E-value=3.7e+02 Score=22.57 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=19.7
Q ss_pred hcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHH
Q 002790 459 KCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGEN 496 (881)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~ 496 (881)
..|+.+.|+++++.+. +....|...+.++...|..+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3355555555555555 455555555555555554433
No 441
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.84 E-value=2.8e+02 Score=31.90 Aligned_cols=134 Identities=16% Similarity=0.010 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHH
Q 002790 510 KPDGVAFVAVLSACSHAG--LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN--AYVW 584 (881)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g--~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd--~~~~ 584 (881)
-|+..+..+++.-...-- .-+-|-.++-.|. + .+.|-=.+.|.-.--..-.|+...|.+.+... ..+|. .+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 466666666554433221 2333445555553 1 22332122222122234568889999888776 33332 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 585 GTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 585 ~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..|.....+.|..-.|-.++.+.+.++...|-++..++++|.-..+.+.|++.|+.+.+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 5566667777788889999999998888888999999999999999999999999887654
No 442
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.75 E-value=1e+03 Score=27.03 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHhccc---C---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------cCCCCCH--
Q 002790 455 NMYMKCGCLEEGHLVFEQIEK---K---------DLITWNSMISGYGMNGLGENALATFEEMIE-------AGFKPDG-- 513 (881)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~m~~---~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~pd~-- 513 (881)
..+.-.|++.+|.+++...-- + .-+.||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445667889999888876531 1 234577777777777777777777766653 4555542
Q ss_pred ---------HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 002790 514 ---------VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGR 561 (881)
Q Consensus 514 ---------~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~ 561 (881)
.+|+. .-.|.+.|++-.|.+.|.+..+.+ ..++..|--|..+|..
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 23333 234678888888998888887543 4566778878777753
No 443
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.03 E-value=5.1e+02 Score=30.36 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCCC------hhHHHHHHHHHHHcCChHH--HHHHHHHHHHccCCCCCCCChhhHHHH
Q 002790 312 ALICVYGKHGDVKVAQNLFSEIEEKN------IVSWNALITSYAEAGLCDE--AVEVFSQLEKLDGGSMERPNVISWSAV 383 (881)
Q Consensus 312 ~Li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~--A~~l~~~m~~~~~~~~~~p~~~~y~~l 383 (881)
+|..+|...|++..+.++++.....+ ...+|..|+...+.|.++- ...-..+..+... ..-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67777777888877777777765421 3467777777777776542 1222222222221 34555666665
Q ss_pred HHHHH
Q 002790 384 IGAFA 388 (881)
Q Consensus 384 i~~~~ 388 (881)
+++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55443
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.00 E-value=5.1e+02 Score=23.34 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHH
Q 002790 355 DEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRK 402 (881)
Q Consensus 355 ~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~ 402 (881)
+++.++|..|..+++ -.--..-|..-...+.+.|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~I---G~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGI---GTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTT---STTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 378888888888776 344556677777777888888888888764
No 445
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.71 E-value=9.1e+02 Score=27.87 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCC--Ceeh---HHHHHHHHHhCCChhHHHHHHHHhHHc
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVK--NYIS---WNMMFSGFALNFDCDGALELFKRMELE 231 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~--~~~~---y~~li~~~~~~g~~~~A~~l~~~m~~~ 231 (881)
...|+.-|.+.+++++|..++..|.-. .... .+.+.+.+.+..--++....++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346778999999999999999998732 2233 344445555655455555666665543
No 446
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.61 E-value=8.3e+02 Score=25.58 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHhCCChhHHHHHHHHhHHcCCCCCHhHH-------HHHHHHHHhcCChHHHHHHH
Q 002790 209 FSGFALNFDCDGALELFKRMELEGLEPNFVTW-------TSLLSSHARCGRLEETMDLF 260 (881)
Q Consensus 209 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty-------~~li~~~~~~g~~~~A~~l~ 260 (881)
.+-..+.+++++|...+.+....|+..|..+. ..+...|...|++..--+..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 33455667778888888888777776655443 33455556666555444443
No 447
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.62 E-value=1.1e+03 Score=26.45 Aligned_cols=167 Identities=17% Similarity=0.065 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHC---CC-CCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 002790 392 RGEEALDLFRKMQLA---KV-VANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGH 467 (881)
Q Consensus 392 ~~~~A~~l~~~m~~~---g~-~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 467 (881)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+... ..........++.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~ 216 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEAL 216 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHH
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHH
Q 002790 468 LVFEQIEKKDLITWNSMISGYGMN---GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGL-----VNEGRRIFDMM 539 (881)
Q Consensus 468 ~~~~~m~~~d~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-----~~~A~~l~~~m 539 (881)
........++......++.++.+. .+.+.|+.++.+|.+.|..|....-..+..++-..|. ..-|...++..
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 002790 540 VREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKN 574 (881)
Q Consensus 540 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~ 574 (881)
. .-|..-........+-.++.+-+-..+...+++
T Consensus 297 ~-~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 297 E-RIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred H-HhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.58 E-value=1e+03 Score=26.32 Aligned_cols=59 Identities=19% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhccC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 308 FVKNALICVYGKHGDVKVAQNLFSEIEE------KNIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 308 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
..+.-+.+.|..+|+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456688899999999999999999654 1234566666666677888777777766655
No 449
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.49 E-value=2.4e+02 Score=19.08 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=6.4
Q ss_pred HHHHHHcCCHHHHHHH
Q 002790 622 SNIYAASGRWEDAAKV 637 (881)
Q Consensus 622 ~~~~~~~g~~~eA~~~ 637 (881)
+-.+...|++++|.++
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334444444444444
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.97 E-value=1.5e+02 Score=31.27 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAV 519 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 519 (881)
-|+..|....+.|++++|+.+++|..+.|..--..+|..-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888888889999999999999888876555555443
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=1.7e+03 Score=28.42 Aligned_cols=122 Identities=12% Similarity=0.050 Sum_probs=57.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-CC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 002790 516 FVAVLSACSHAGLVNEGRRIFDMMVREFRIE-PQ-MEHYACMVDLLGRAGLLQEASDIVKNMPME-PNAYVWGTLLNSCR 592 (881)
Q Consensus 516 ~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~-p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~~~-pd~~~~~~Ll~~~~ 592 (881)
|..+++-+-..+..+.+.++-..+.+..+.. |. ..+++++.+.....|.+-+|.+.+-+.+.. -...+...|+...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4555555556666666666665555322111 11 345566666666666666666665544211 11224444444444
Q ss_pred HcCCHH------------HHHH-HHHHHhhcCCCC-cchHHHHHHHHHHcCCHHHHHHH
Q 002790 593 MHKNTD------------VAEA-MASQIFGLITET-TGSYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 593 ~~g~~~------------~A~~-~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~eA~~~ 637 (881)
..|.++ +.+. +.+..-...|-. ...|..|---+...++|.+|..+
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 444332 2222 222222223322 23344444444556666666554
No 452
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.04 E-value=33 Score=36.35 Aligned_cols=102 Identities=12% Similarity=-0.028 Sum_probs=70.9
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCcceeEEEcCeEEEEeeccCCC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQ 671 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~ 671 (881)
...|.++.|++.+..+++++|+....|.--..++.+.+++..|++=+....+.+.....+.-|-.. +....
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~---------A~rll 195 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGY---------AERLL 195 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhH---------HHHHh
Confidence 456789999999999999999999999999999999999999998888766654322222111000 01111
Q ss_pred cchHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhc
Q 002790 672 SDLKNVCEVLEELALQMENKGCVPDNDIILWEMMG 706 (881)
Q Consensus 672 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~ 706 (881)
+. ++.....+..-.+.+|.+++..|+..+..
T Consensus 196 g~----~e~aa~dl~~a~kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 196 GN----WEEAAHDLALACKLDYDEANSATLKEVFP 226 (377)
T ss_pred hc----hHHHHHHHHHHHhccccHHHHHHHHHhcc
Confidence 22 22223355556778999999998877654
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.88 E-value=5.2e+02 Score=28.75 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIF-------GLIT-ETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~-------~~~p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
+...|++..+-.||+..|++..+.+- ...| -...+|+.++-+|.-.+|+.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777666442 1223 356789999999999999999999998775
No 454
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.23 E-value=6.1e+02 Score=22.82 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCc----chHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGL-------ITETT----GSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 580 d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~----~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
|..++..|-.++...|++++++.-.+.++.. +.+.- .....-+.++...|+.++|+..|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445556666666777776666655555432 33322 23334566777889999999988754
No 455
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=9e+02 Score=29.60 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=86.0
Q ss_pred HHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 002790 456 MYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRI 535 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l 535 (881)
....+|+++.|.+.-..+- |..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4457888888887766554 556899999999999999999888887654 33333345567888776666
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 536 FDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 536 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
.+... +..|... ....-.-.|+.++=.++++..+.-|-. |. ....+|.-++|+++.++.-.
T Consensus 721 ~~iae----~r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAE----IRNDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHH----hhhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 55553 2333221 111122368888888888887655422 21 13467888899999888765
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.76 E-value=3e+02 Score=28.20 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=9.6
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 002790 521 SACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 521 ~a~~~~g~~~~A~~l~~~m~ 540 (881)
.-|.+.|++++|.++|+.+.
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 33444555555555554443
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.70 E-value=1.2e+03 Score=25.91 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCC------CCeehHHHHHHHHHhCCChhHHHHHHHHhHH
Q 002790 172 HIVNELIGMYAKMGQMSDSFKLFDKVRV------KNYISWNMMFSGFALNFDCDGALELFKRMEL 230 (881)
Q Consensus 172 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~------~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 230 (881)
..+.-+..-|..+|+++.|.+.+.+... ..+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788889999999999999988552 1223566666666677777777766666654
No 458
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.31 E-value=1.1e+03 Score=25.47 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 002790 453 LLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGEN-ALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNE 531 (881)
Q Consensus 453 Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 531 (881)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+. +..+++++... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 45666666666655555555554444455555555444443333 33344444432 788888888888877666655
Q ss_pred HHHHHHHHH
Q 002790 532 GRRIFDMMV 540 (881)
Q Consensus 532 A~~l~~~m~ 540 (881)
....++...
T Consensus 249 ~~~~i~~~L 257 (340)
T PF12069_consen 249 VAILIDALL 257 (340)
T ss_pred HHHHHHHHh
Confidence 555455555
Done!