Query 002790
Match_columns 881
No_of_seqs 765 out of 4408
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 17:24:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002790.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1506-1510//hhsearch_pdb/002790hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 333.6 38.9 534 37-644 29-579 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 303.7 37.9 500 60-627 81-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 221.1 20.3 81 340-424 142-222 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 217.5 22.3 187 97-283 26-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 199.4 43.1 372 211-629 8-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 193.8 43.6 353 244-644 6-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 181.1 34.3 225 415-645 240-479 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 179.1 36.3 240 378-621 238-489 (514)
9 3fp2_A TPR repeat-containing p 1.0 1 1 174.1 35.4 251 352-645 216-492 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 173.2 34.4 105 520-627 264-375 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=333.58 Aligned_cols=534 Identities=9% Similarity=0.001 Sum_probs=352.6
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99993070069999999998299988589999999999079916899998319999999875899999999909995699
Q 002790 37 LLQQCKTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENA 116 (881)
Q Consensus 37 ll~~c~~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A 116 (881)
+...|.....+...|......+...++... ....+...|.+..+...++.++. +++..|+.++..+.+.|++++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A 103 (597)
T 2xpi_A 29 AYMTPPSMGALNANNSNSQLSTLTISPMTY--LANNTSTDGSFLKERNAQNTDSL---SREDYLRLWRHDALMQQQYKCA 103 (597)
T ss_dssp ----------------CTTSCGGGGCGGGG--GC------------------------CHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCCCHHHHHHCCCCCCCCCEEECHHHH--HCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCHHH
T ss_conf 706992077886322312231122250354--04566556766788775466337---8999999999999874583479
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998589999922089999999706991000024899999999929897566899999999906995799999830
Q 002790 117 LKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDK 196 (881)
Q Consensus 117 ~~l~~~m~~~g~~p~~~ty~~ll~a~~~~~~~~~a~~~~~~i~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 196 (881)
+.+|++|... .|+..++..+..++...|+++.| ..+++.+... +++..+++.++.+|.+.|++++|.++|++
T Consensus 104 ~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 104 AFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA----KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH----HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHH----HHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999960--89935799999999974769999----9999987335--45650899999999988669999999842
Q ss_pred CCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 27899013999999999189932899999995875999887479999999996599479999999999859987877799
Q 002790 197 VRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIA 276 (881)
Q Consensus 197 m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 276 (881)
+...+... ..+.+.+ -...+.+++..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+.
T Consensus 176 ~~~~~~~~-----~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 238 (597)
T 2xpi_A 176 TNPFRKDE-----KNANKLL-----------MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFD 238 (597)
T ss_dssp SCTTC--------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CCCCCCCC-----CCCCCCC-----------CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-HHHHHHH
T ss_conf 48863223-----2343343-----------21123512589999988999983998999999999997293-2569999
Q ss_pred HHHHHHHCCCCCHH--HHHH-HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHC
Q ss_conf 99999862046036--9999-99999609997278999999999945997999999963269--9963799999999981
Q 002790 277 VVLSVCADLAADHM--GKVI-HGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--KNIVSWNALITSYAEA 351 (881)
Q Consensus 277 ~ll~a~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 351 (881)
.+...+...+.... ...+ +..+...+......+++.++..|.+.|++++|..+|+++.+ ++..+|+.++..|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99985034615678999865774234430889999999999998073139999999987643883099999999999984
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHH
Q ss_conf 99379999999978735999999880107789999997899579999999978779887666799999998401108999
Q 002790 352 GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIG 431 (881)
Q Consensus 352 g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 431 (881)
|++++|..+|+++.+.+ +.+..++..++..+.+.|+.++|..+++++.... +.
T Consensus 319 g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~--------------------- 371 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-----PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE--------------------- 371 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-----TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---------------------
T ss_pred CCHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC---------------------
T ss_conf 68999999999999729-----5537999999999998277779999999998518-35---------------------
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998818998654999999999953999999999985335---997899999999997599379999999999929
Q 002790 432 REIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAG 508 (881)
Q Consensus 432 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 508 (881)
+..++..++.+|.+.|++++|.+.|+++.+ .+..+|+.++..|.+.|++++|+++|++|...+
T Consensus 372 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 372 --------------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp --------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred --------------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf --------------479999999999983569999999999987297778999999999997577799999999999868
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC-
Q ss_conf 8778999999999998039899999999998985399879548999999999919989999999829-------99999-
Q 002790 509 FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-------PMEPN- 580 (881)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~pd- 580 (881)
+.+..++..++.+|.+.|++++|..+|+++.+. ...+..+|..++..|.+.|++++|.++|+++ +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf -134389999999999857999999999999984--88876799999999998189999999999999853234545354
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf -9999999999997399999999999985028999114999999999729988999999999849
Q 002790 581 -AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 581 -~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
..+|..++..|.+.|++++|...++++.+..|.++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 99999999999998047999999999999738997389999999999817899999999999720
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=303.66 Aligned_cols=500 Identities=11% Similarity=-0.055 Sum_probs=379.1
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 98858999999999907991689999831999999987589999999990999569999999998589999922089999
Q 002790 60 NASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVI 139 (881)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 139 (881)
.++...++.++..|.+.|++++|..+|+++.. ..|+..+|..++.++.+.|++++|..+|+++... +++..++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHH
T ss_conf 78999999999999874583479999999996-0899357999999999747699999999987335--45650899999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHH
Q ss_conf 99970699100002489999999992989756689999999990699579999983027899013999999999189932
Q 002790 140 RACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCD 219 (881)
Q Consensus 140 ~a~~~~~~~~~a~~~~~~i~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~ 219 (881)
.++.+.|++++| ..+++.+ .|+... ...+.+.++. +.-...+..+|+.++..|.+.|+++
T Consensus 158 ~~~~~~g~~~~A----~~~~~~~-----~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGA----LNLLGET-----NPFRKD----EKNANKLLMQ-------DGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHH----HHHHCSS-----CTTC--------------CC-------CSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH----HHHHHCC-----CCCCCC----CCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 999988669999----9998424-----886322----3234334321-------1235125899999889999839989
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999587599988747999999999659947999--99-9999985998787779999999862046036999999
Q 002790 220 GALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETM--DL-FDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHG 296 (881)
Q Consensus 220 ~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~--~l-~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 296 (881)
+|.++|++|...+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|..++..+.+.++.+.+..+++
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999729-325699999998503461567899986577423443088999999999999807313999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999609997278999999999945997999999963269---99637999999999819937999999997873599999
Q 002790 297 FVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSME 373 (881)
Q Consensus 297 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 373 (881)
.+.+. +++..++..++..|.+.|++++|..+|+++.+ .+..+|..++.++.+.|+.++|..+++++....
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 369 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH----- 369 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred HHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-----
T ss_conf 76438--83099999999999984689999999999997295537999999999998277779999999998518-----
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 98801077899999978995799999999787798876667999999984011089999999999881899865499999
Q 002790 374 RPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGL 453 (881)
Q Consensus 374 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~L 453 (881)
+.+..+|..++..|.+.|++++|..+|+++.... |+ +...++.+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l 413 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQ----------------------------------FGPAWIGF 413 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC--CC----------------------------------CHHHHHHH
T ss_conf 3547999999999998356999999999998729--77----------------------------------78999999
Q ss_pred HHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 9999953999999999985335---9978999999999975993799999999999298778999999999998039899
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVN 530 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (881)
+..|.+.|++++|.+.|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..+...+.+.|+++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHH
T ss_conf 9999975777999999999998681343899999999998579999999999999848-887679999999999818999
Q ss_pred HHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999989853---99879--548999999999919989999999829-999-9999999999999973999999999
Q 002790 531 EGRRIFDMMVREF---RIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAM 603 (881)
Q Consensus 531 ~A~~l~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-pd~~~~~~ll~~~~~~~~~~~A~~~ 603 (881)
+|..+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999998532345453549999999999999804799999999999973899738999999999981789999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999850289991149999999997
Q 002790 604 ASQIFGLITETTGSYMLLSNIYAA 627 (881)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~ 627 (881)
++++++..|.++..+..++.+|..
T Consensus 573 ~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 573 LHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 999972088874899999998743
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=221.11 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 79999999998199379999999978735999999880107789999997899579999999978779887666799999
Q 002790 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLL 419 (881)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 419 (881)
+|+.+|.+|++.|+.++|.++|++|.+.| ..||..+|+.||.+|++.|+.++|.+++++|...|..|+..||..++
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G----~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESE----VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred EEHHHHHHHHHCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 10489999998889999999999998629----99999999999999853898999999999999948996999999999
Q ss_pred HHHHH
Q ss_conf 99840
Q 002790 420 SVCAE 424 (881)
Q Consensus 420 ~~~~~ 424 (881)
..++.
T Consensus 218 ~~F~s 222 (501)
T 4g26_A 218 EWFKS 222 (501)
T ss_dssp HHHHS
T ss_pred HHHHC
T ss_conf 99830
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=217.46 Aligned_cols=187 Identities=15% Similarity=0.171 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC-----CCHHHHHHHHHHHHCCCCCH
Q ss_conf 7589999999990999569999999998589999922089999999706991000-----02489999999992989756
Q 002790 97 SLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFR-----FSFGQIVHNHVLQMGFQGNV 171 (881)
Q Consensus 97 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~a~~~~~~~~~a-----~~~~~~i~~~m~~~g~~~~~ 171 (881)
...++.+|..|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+....+ ++.+..++++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999859899999999999998189987839999999998578304333212499999999999980899989
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC----CCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 689999999990699579999983027----8990139999999991899328999999958759998874799999999
Q 002790 172 HIVNELIGMYAKMGQMSDSFKLFDKVR----VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSH 247 (881)
Q Consensus 172 ~~~~~Li~~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~ 247 (881)
.+|+.+|.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999998469778899999999972898861110489999998889999999999998629999999999999998
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 965994799999999998599878777999999986
Q 002790 248 ARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCA 283 (881)
Q Consensus 248 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 283 (881)
++.|+.++|.++|++|++.|..|+..||+.++..+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 538989999999999999489969999999999983
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=199.44 Aligned_cols=372 Identities=15% Similarity=0.116 Sum_probs=176.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHH
Q ss_conf 99918993289999999587599988747999999999659947999999999985998787779999999862046036
Q 002790 211 GFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHM 290 (881)
Q Consensus 211 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 290 (881)
.+.+.|++++|.+.++++.... +.+...+..+...+...|++++|...++...+.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------------------ 62 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------------------ 62 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------------------------
T ss_conf 9987799999999999999849-788999999999999868999999999999761------------------------
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999999609997278999999999945997999999963269--9-9637999999999819937999999997873
Q 002790 291 GKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEKL 367 (881)
Q Consensus 291 a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 367 (881)
.|.+...+..+...|.+.|++++|...|+++.+ | +...|..+...+.+.|++++|...|+++.+.
T Consensus 63 ------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 63 ------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------------97866999999999987799999999999998749653999999999999858999999999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 59999998801077899999978995799999999787798876667999999984011089999999999881899865
Q 002790 368 DGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNI 447 (881)
Q Consensus 368 ~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 447 (881)
. +.+...+..+...+...|++++|...|+++.... +.+..++..+...+...|+.+.|...++.+.+.. +.+.
T Consensus 131 ~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 203 (388)
T 1w3b_A 131 N-----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFL 203 (388)
T ss_dssp C-----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred C-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCH
T ss_conf 9-----8968999999999998468999999999998729-8978999999999998599999999999998559-8867
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 4999999999953999999999985335--9-978999999999975993799999999999298778999999999998
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACS 524 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 524 (881)
..+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 9999999999985789999999999985296878999999999998688999999999998649-998899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 039899999999998985399879548999999999919989999999829-9999-99999999999997399999999
Q 002790 525 HAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEA 602 (881)
Q Consensus 525 ~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~ 602 (881)
+.|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 869979999999999864--944499999999999984899999999999986098739999779999998688899999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999985028999114999999999729
Q 002790 603 MASQIFGLITETTGSYMLLSNIYAASG 629 (881)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (881)
.++++++..|.++..|..++.++.+.|
T Consensus 361 ~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 999998619997899985999998745
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=193.85 Aligned_cols=353 Identities=14% Similarity=0.110 Sum_probs=273.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999659947999999999985998787779999999862046036999999999609997278999999999945997
Q 002790 244 LSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDV 323 (881)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 323 (881)
...+.+.|++++|.+.+..+.+.. |.+...+..+...+...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~------------------------------------p~~~~~~~~l~~~~~~~~~~ 49 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE------------------------------------PDNTGVLLLLSSIHFQCRRL 49 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC------------------------------------CCCHHHHHHHHHHHHHCCCH
T ss_conf 999987799999999999999849------------------------------------78899999999999986899
Q ss_pred HHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999963269---99637999999999819937999999997873599999988010778999999789957999999
Q 002790 324 KVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLF 400 (881)
Q Consensus 324 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~ 400 (881)
++|...++...+ .+...|..+...+.+.|++++|...|+++.... +.+...|..+...+.+.|++++|...|
T Consensus 50 ~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~ 124 (388)
T 1w3b_A 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-----PDFIDGYINLAAALVAAGDMEGAVQAY 124 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999976197866999999999987799999999999998749-----653999999999999858999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-
Q ss_conf 997877988766-679999999840110899999999998818998654999999999953999999999985335--9-
Q 002790 401 RKMQLAKVVANS-VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K- 476 (881)
Q Consensus 401 ~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~- 476 (881)
+++... .|+. ..+..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+ |
T Consensus 125 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 125 VSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 999975--98968999999999998468999999999998729-897899999999999859999999999999855988
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q ss_conf 978999999999975993799999999999298778999999999998039899999999998985399879-5489999
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACM 555 (881)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~l 555 (881)
+...|..+...+...|++++|...+++..... +.+..++..+...+...|++++|...++++.+ ..|+ ...|..+
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 277 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNL 277 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHH
T ss_conf 67999999999998578999999999998529-68789999999999986889999999999986---499988999999
Q ss_pred HHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 99999919989999999829--9999999999999999973999999999999850289991149999999997299889
Q 002790 556 VDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWED 633 (881)
Q Consensus 556 i~~~~~~g~~~eA~~~~~~m--~~~pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 633 (881)
+..+.+.|++++|.+.++++ ..+.+..++..+...+...|++++|...++++.+..|.+...+..++.+|.+.|++++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999869979999999999864944499999999999984899999999999986098739999779999998688899
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999849
Q 002790 634 AAKVRISAKTK 644 (881)
Q Consensus 634 A~~~~~~m~~~ 644 (881)
|...++++.+.
T Consensus 358 A~~~~~~a~~~ 368 (388)
T 1w3b_A 358 ALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=181.13 Aligned_cols=225 Identities=8% Similarity=-0.081 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC---CHHHHHHHHHHHHHC
Q ss_conf 99999998401108999999999988189986549999999999539999999999853359---978999999999975
Q 002790 415 ISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMN 491 (881)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 491 (881)
+..+...+...|+++.|...+..+.+.... ...+..+...|...|++++|...++.+.+. +...|..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999878999999999999863864--899999999999888899999999998613867789999999999980
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99379999999999929877899999999999803989999999999898539987-95489999999999199899999
Q 002790 492 GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASD 570 (881)
Q Consensus 492 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~ 570 (881)
|++++|...+++..... +.+...+..+...+...|++++|...++.+.+. .| +...+..+...+.+.|++++|..
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 77999999999998738-502899999999999868999999999999987---54677899999999987889999999
Q ss_pred HHHHC----CCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99829----99999----9999999999997---3999999999999850289991149999999997299889999999
Q 002790 571 IVKNM----PMEPN----AYVWGTLLNSCRM---HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 571 ~~~~m----~~~pd----~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
.++++ +..++ ...+..+...+.. .|++++|...++++.+..|.++..+..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999976123321789999999999998663325888999999999987585558999999999998257999999999
Q ss_pred HHHHCC
Q ss_conf 998499
Q 002790 640 SAKTKG 645 (881)
Q Consensus 640 ~m~~~g 645 (881)
++.+..
T Consensus 474 ~a~~~~ 479 (514)
T 2gw1_A 474 ESADLA 479 (514)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 998766
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=179.13 Aligned_cols=240 Identities=9% Similarity=-0.028 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 10778999999789957999999997877988766679999999840110899999999998818998654999999999
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMY 457 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 457 (881)
..+..+...+...|++++|...++++.... |+...+..+...+...|+++.|...+..+.... +.+...+..+...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 999999999998789999999999998638--648999999999998888999999999986138-67789999999999
Q ss_pred HHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 953999999999985335---99789999999999759937999999999992987789999999999980398999999
Q 002790 458 MKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRR 534 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 534 (881)
...|++++|...++.+.+ .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 980779999999999987385028999999999998689999999999999875-4677899999999987889999999
Q ss_pred HHHHHHHHCCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99998985399879----5489999999999---19989999999829-99-9999999999999997399999999999
Q 002790 535 IFDMMVREFRIEPQ----MEHYACMVDLLGR---AGLLQEASDIVKNM-PM-EPNAYVWGTLLNSCRMHKNTDVAEAMAS 605 (881)
Q Consensus 535 l~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~m-~~-~pd~~~~~~ll~~~~~~~~~~~A~~~~~ 605 (881)
.++.+.+...-.+. ...+..+...+.. .|++++|.+.++++ .. +.+...+..+...+...|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999976123321789999999999998663325888999999999987585558999999999998257999999999
Q ss_pred HHHHCCCCCCCHHHHH
Q ss_conf 9850289991149999
Q 002790 606 QIFGLITETTGSYMLL 621 (881)
Q Consensus 606 ~~~~~~p~~~~~~~~l 621 (881)
++.+..|.++..+..+
T Consensus 474 ~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 474 ESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHCSSHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHH
T ss_conf 9987661468899999
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=174.15 Aligned_cols=251 Identities=10% Similarity=-0.003 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9937999999997873599999988-------010778999999789957999999997877988766679999999840
Q 002790 352 GLCDEAVEVFSQLEKLDGGSMERPN-------VISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAE 424 (881)
Q Consensus 352 g~~~~A~~l~~~m~~~~~~~~~~p~-------~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 424 (881)
+++++|...++++.+.. +.+ ..++..+...+...|++++|...+++.... .|+...+..+...+..
T Consensus 216 ~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHH
T ss_conf 79999999999999878-----7740445999999999999987545578999999999866--9874699999999998
Q ss_pred HCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 11089999999999881899865499999999995399999999998533599789999999999759937999999999
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEM 504 (881)
Q Consensus 425 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 504 (881)
.|+++.|...+..+.+.. + .+...|..+...+...|++++|...+++.
T Consensus 289 ~~~~~~A~~~~~~~~~~~-~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLN-P-------------------------------EYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp SSCCHHHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHCCC-C-------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 037999999999975459-9-------------------------------98799999999998668999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHC----CCC-
Q ss_conf 99298778999999999998039899999999998985399879-548999999999919989999999829----999-
Q 002790 505 IEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM----PME- 578 (881)
Q Consensus 505 ~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~- 578 (881)
.... +.+...+..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.++++ +..
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
T ss_conf 9859-997799999999999847799999999999873---999859999999999883788999999999987097624
Q ss_pred ---CCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf ---9999999999999973----------999999999999850289991149999999997299889999999998499
Q 002790 579 ---PNAYVWGTLLNSCRMH----------KNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 579 ---pd~~~~~~ll~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
.....+......+... |++++|...++++.+..|.++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 46888999998899999976401002247579999999999997499978999999999998514999999999999868
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=173.17 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=69.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q ss_conf 99998039899999999998985399879-----548999999999919989999999829-9999-9999999999999
Q 002790 520 LSACSHAGLVNEGRRIFDMMVREFRIEPQ-----MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCR 592 (881)
Q Consensus 520 l~a~~~~g~~~~A~~l~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~ 592 (881)
...+...|++++|...++.+.+. .|+ ...+..++..+.+.|++++|...++++ ...| +...|..+..+|.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99998717999999999999850---873368999999999999998788999999999998848454899999999998
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 73999999999999850289991149999999997
Q 002790 593 MHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAA 627 (881)
Q Consensus 593 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (881)
..|++++|...++++++..|.++..+..+..+...
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 70379999999999988593529999999999998
Done!