BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002791
(881 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFN|A Chain A, Crystal Structure Of Human Nad Kinase
pdb|3PFN|B Chain B, Crystal Structure Of Human Nad Kinase
pdb|3PFN|C Chain C, Crystal Structure Of Human Nad Kinase
pdb|3PFN|D Chain D, Crystal Structure Of Human Nad Kinase
Length = 365
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 118/220 (53%), Gaps = 36/220 (16%)
Query: 682 QMLMWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGF 738
Q L W +P++VLV+KK A L++ KE+ + L +E + VE V + A F
Sbjct: 30 QRLTWNKSPKSVLVIKKXRDASLLQPFKELCTHLX-EENXIVYVEKKVLEDPAIASDESF 88
Query: 739 GFVQTFYL---QDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS 795
G V+ + +D D+ ++DF+ CLGGDG +L+AS+LF+G+VPPV +F+LGSLGFLT
Sbjct: 89 GAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVXAFHLGSLGFLTP 148
Query: 796 HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFR----------NGKAMPGK----- 840
FE+++ + QVI GN + LR RL + + NG G
Sbjct: 149 FSFENFQSQVTQVIEGNAA-----VVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGL 203
Query: 841 ---------VFDVLNEVVVDRGSNPYLSKIECYEHDRLIT 871
+ VLNEVV+DRG + YLS ++ Y LIT
Sbjct: 204 DXDVGKQAXQYQVLNEVVIDRGPSSYLSNVDVYLDGHLIT 243
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
Length = 388
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 19/207 (9%)
Query: 677 PSTQQQMLMWKTTPRTVLVLKKP-GPALMEEAKEVASFLYHQ-EKMNILVEPDVHDIFAR 734
P+++ Q L+W+ + V + KKP P+ E E + L+ ++N++V+PDV + ++
Sbjct: 28 PNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQ 87
Query: 735 I--------PGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGA-VPPVISF 785
P + Y D+ R D + LGGDG ILH ++F VPPV++F
Sbjct: 88 DFKSPLENDPNRPHI--LYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAF 145
Query: 786 NLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845
LG+LGFL+ F+++++ ++VI R RL C + + + V +
Sbjct: 146 ALGTLGFLSPFDFKEHKKVFQEVISSR-----AKCLHRTRLECHL-KKKDSNSSIVTHAM 199
Query: 846 NEVVVDRGSNPYLSKIECYEHDRLITK 872
N++ + RG++P+L+ ++ + +T+
Sbjct: 200 NDIFLHRGNSPHLTNLDIFIDGEFLTR 226
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 809
+D+ ++ D +GGDG +L A+ + VI N G+LGFLT ++ Q L V
Sbjct: 59 ADIGQKADLAVVVGGDGNMLGAARVLARYDIKVIGVNRGNLGFLTDLDPDNALQQLSDV- 117
Query: 810 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL 869
L+G Y++ R E ++ +NEVV+ G ++ + E Y DR
Sbjct: 118 -----LEGEYLS-EQRFLLETHVRRTNQQSRISTAINEVVLHPGKVAHMIEFEVYIDDRF 171
>pdb|1U0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1Y3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
pdb|1Y3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
Length = 307
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTL- 815
+ V LGGDG L A+ L R A PV+ NLG +GFL E L V+ + +
Sbjct: 77 ELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVE 136
Query: 816 DGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKFG 874
D + + + +R I G A LNEV +++G + + R ++ FG
Sbjct: 137 DRLTLDVVVRQGGRIVNRGWA--------LNEVSLEKGPRLGVLGVVVEIDGRPVSAFG 187
>pdb|1Y3H|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
pdb|1Y3H|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
Length = 307
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTL- 815
+ V LGGDG L A+ L R A PV+ NLG +GFL E L V+ + +
Sbjct: 77 ELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVE 136
Query: 816 DGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKFG 874
D + + + +R I G A LNEV +++G + + R ++ FG
Sbjct: 137 DRLTLDVVVRQGGRIVNRGWA--------LNEVSLEKGPRLGVLGVVVEIDGRPVSAFG 187
>pdb|2AN1|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|C Chain C, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|D Chain D, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
Length = 292
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 809
+++ ++ D +GGDG +L A+ VI N G+LGFLT ++ Q L V
Sbjct: 58 AEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDV- 116
Query: 810 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECY 864
L+G YI+ + R E + ++ +NEVV+ G ++ + E Y
Sbjct: 117 -----LEGRYISEK-RFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMIEFEVY 165
>pdb|1SUW|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
Length = 249
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 741 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 800
V+ S+ E DF+ +GGDG IL + PP+ N G +G LT E+
Sbjct: 25 VEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKRC-PPIFGINTGRVGLLTHASPEN 83
Query: 801 YRQDLRQVI 809
+ +L++ +
Sbjct: 84 FEVELKKAV 92
>pdb|1Z0S|A Chain A, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|B Chain B, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|C Chain C, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|D Chain D, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0U|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0U|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0Z|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
Length = 278
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 741 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 800
V+ S+ E DF+ +GGDG IL + PP+ N G +G LT E+
Sbjct: 54 VEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKRC-PPIFGINTGRVGLLTHASPEN 112
Query: 801 YRQDLRQVI 809
+ +L++ +
Sbjct: 113 FEVELKKAV 121
>pdb|1YT5|A Chain A, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|B Chain B, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|C Chain C, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|D Chain D, Crystal Structure Of Nad Kinase From Thermotoga Maritima
Length = 258
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED---YRQDLR 806
D + +GGDG +L A+ P ++ F G LGFLTS+ ++ + +DLR
Sbjct: 43 DLIVVVGGDGTVLKAAKKAADGTP-MVGFKAGRLGFLTSYTLDEIDRFLEDLR 94
>pdb|2V28|A Chain A, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
pdb|2V28|B Chain B, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
Length = 267
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 686 WKTTPRTVLVLKKPGPALMEEAK-EVASFLYHQEKMNILVEPDV-HDIFARIP 736
W+ P L+ L+ E K VA+F+ +E+M+ L EPD+ H+IF P
Sbjct: 77 WECYPVPALIGFGEFFRLLSEKKFPVATFIRSREEMDYLQEPDIFHEIFGHCP 129
>pdb|2V27|A Chain A, Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
pdb|2V27|B Chain B, Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
Length = 275
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 686 WKTTPRTVLVLKKPGPALMEEAK-EVASFLYHQEKMNILVEPDV-HDIFARIP 736
W+ P L+ L+ E K VA+F+ +E+M+ L EPD+ H+IF P
Sbjct: 77 WECYPVPALIGFGEFFRLLSEKKFPVATFIRSREEMDYLQEPDIFHEIFGHCP 129
>pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|B Chain B, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|C Chain C, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|D Chain D, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|E Chain E, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|F Chain F, The Crystal Structure Of Glleurs-Cp1
Length = 311
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 157 EDVLSGRSSIMNAYRVADISMTEDQLPPLAIFR-------SEMKRCCESMHIALENYLTP 209
+D+L R+ I Y V D+ + + PL I S ++ C ES
Sbjct: 199 KDILENRNGIAEKYGV-DVGLMLEPYSPLPIIEIPDIGTLSAVRLCEES----------- 246
Query: 210 EDVRSLDVWRKLQRLKNVCYDSGFPRG 236
+V SL KL ++K +CY GF G
Sbjct: 247 -NVSSLHDRAKLTQIKEICYTKGFYTG 272
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 74 QSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHA----ALMDTLCNPLTGEC-----T 124
Q PS L PV GDI V + F H+ A+ DTLC L G C +
Sbjct: 95 QEQPPSILDLEKPVDGDIVPVILF---FHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVS 151
Query: 125 VSYEFTPE 132
V+Y PE
Sbjct: 152 VNYRRAPE 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,845,279
Number of Sequences: 62578
Number of extensions: 1092005
Number of successful extensions: 2533
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2516
Number of HSP's gapped (non-prelim): 19
length of query: 881
length of database: 14,973,337
effective HSP length: 107
effective length of query: 774
effective length of database: 8,277,491
effective search space: 6406778034
effective search space used: 6406778034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)