Query 002791
Match_columns 881
No_of_seqs 460 out of 2522
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02727 NAD kinase 100.0 1E-212 3E-217 1837.0 63.2 852 7-880 1-869 (986)
2 KOG2178 Predicted sugar kinase 100.0 3.1E-33 6.8E-38 305.0 17.2 214 661-879 65-290 (409)
3 PLN02935 Bifunctional NADH kin 100.0 8.2E-33 1.8E-37 312.8 21.1 203 673-880 177-386 (508)
4 PRK14077 pnk inorganic polypho 100.0 4.5E-31 9.8E-36 284.3 21.7 173 689-879 9-181 (287)
5 PRK03372 ppnK inorganic polyph 100.0 8.1E-31 1.8E-35 284.4 22.3 183 688-879 3-189 (306)
6 PRK04539 ppnK inorganic polyph 100.0 1.1E-30 2.3E-35 282.5 20.1 180 686-879 1-185 (296)
7 PRK02649 ppnK inorganic polyph 100.0 4.5E-30 9.8E-35 278.6 21.1 181 691-880 2-187 (305)
8 PRK03378 ppnK inorganic polyph 100.0 7.9E-30 1.7E-34 275.3 22.2 178 687-879 2-180 (292)
9 PRK01911 ppnK inorganic polyph 100.0 1.3E-29 2.9E-34 273.5 21.1 177 692-879 2-180 (292)
10 PRK02155 ppnK NAD(+)/NADH kina 100.0 3.3E-29 7.2E-34 270.4 21.2 180 686-880 1-182 (291)
11 PRK14076 pnk inorganic polypho 100.0 5.8E-29 1.3E-33 289.8 22.5 180 684-879 284-465 (569)
12 PRK01231 ppnK inorganic polyph 100.0 3.1E-28 6.8E-33 263.3 22.4 175 690-879 4-179 (295)
13 PRK01185 ppnK inorganic polyph 100.0 1.4E-27 3.1E-32 255.4 21.4 160 692-879 2-162 (271)
14 PRK02231 ppnK inorganic polyph 100.0 1.2E-27 2.5E-32 256.1 19.3 158 707-879 2-160 (272)
15 PRK04885 ppnK inorganic polyph 100.0 2.1E-27 4.6E-32 253.4 19.5 149 692-879 2-152 (265)
16 PRK03501 ppnK inorganic polyph 99.9 7.9E-27 1.7E-31 248.8 20.4 149 691-879 3-153 (264)
17 PRK03708 ppnK inorganic polyph 99.9 3.4E-26 7.5E-31 245.5 21.6 166 692-879 2-169 (277)
18 COG0061 nadF NAD kinase [Coenz 99.9 6E-26 1.3E-30 244.0 21.7 169 691-879 1-170 (281)
19 PF01513 NAD_kinase: ATP-NAD k 99.9 2.4E-26 5.2E-31 246.9 17.9 181 692-879 1-195 (285)
20 PRK14075 pnk inorganic polypho 99.9 2.7E-25 5.9E-30 236.2 20.5 149 692-879 2-150 (256)
21 PRK02645 ppnK inorganic polyph 99.9 2.7E-25 5.8E-30 241.5 20.6 172 690-879 3-183 (305)
22 PRK00561 ppnK inorganic polyph 99.9 6.2E-24 1.3E-28 226.0 19.4 140 692-880 2-143 (259)
23 PLN02929 NADH kinase 99.9 2.3E-23 5.1E-28 225.3 18.4 149 701-880 30-202 (301)
24 PF13350 Y_phosphatase3: Tyros 99.9 2.9E-22 6.2E-27 198.6 9.9 114 267-387 19-164 (164)
25 PRK04761 ppnK inorganic polyph 99.9 2.3E-21 5E-26 205.1 14.5 114 754-880 24-140 (246)
26 PF03162 Y_phosphatase2: Tyros 99.8 1.4E-20 3.1E-25 188.3 12.8 122 245-385 4-129 (164)
27 TIGR01244 conserved hypothetic 99.8 1.4E-19 3E-24 175.3 14.8 114 266-383 6-121 (135)
28 PF04273 DUF442: Putative phos 99.7 9E-18 2E-22 158.2 11.0 101 266-370 6-108 (110)
29 COG3453 Uncharacterized protei 99.6 2E-15 4.4E-20 142.9 12.7 111 267-381 8-120 (130)
30 smart00195 DSPc Dual specifici 99.5 3.1E-13 6.7E-18 129.3 13.7 116 267-393 6-125 (138)
31 KOG1572 Predicted protein tyro 99.5 1.6E-13 3.5E-18 143.1 12.1 125 245-388 57-189 (249)
32 COG2365 Protein tyrosine/serin 99.5 5.2E-14 1.1E-18 149.6 6.6 165 267-432 53-245 (249)
33 cd00127 DSPc Dual specificity 99.4 1E-12 2.2E-17 124.8 12.7 118 267-393 7-128 (139)
34 KOG4180 Predicted kinase [Gene 99.3 3.1E-12 6.6E-17 138.0 9.5 122 753-879 103-263 (395)
35 PTZ00393 protein tyrosine phos 99.3 1.7E-11 3.7E-16 129.4 12.7 105 277-389 106-212 (241)
36 PTZ00242 protein tyrosine phos 99.3 3.6E-11 7.7E-16 120.9 13.6 113 268-388 17-140 (166)
37 PF00782 DSPc: Dual specificit 99.2 2.2E-11 4.7E-16 115.5 8.1 116 269-393 1-120 (133)
38 PF05706 CDKN3: Cyclin-depende 99.2 2.8E-11 6.1E-16 121.5 8.7 103 277-380 61-168 (168)
39 PRK12361 hypothetical protein; 99.2 2.5E-10 5.4E-15 133.5 15.4 121 267-394 100-224 (547)
40 KOG1720 Protein tyrosine phosp 98.8 2.6E-08 5.6E-13 103.2 9.3 94 280-381 87-182 (225)
41 TIGR00147 lipid kinase, YegS/R 98.6 1.6E-07 3.4E-12 101.3 8.8 109 691-812 2-118 (293)
42 PF14566 PTPlike_phytase: Inos 98.4 9.4E-07 2E-11 87.6 7.8 61 308-368 84-145 (149)
43 KOG2836 Protein tyrosine phosp 98.3 5.1E-06 1.1E-10 81.2 10.3 106 268-381 18-131 (173)
44 KOG1719 Dual specificity phosp 98.2 4.8E-06 1.1E-10 83.1 9.5 100 278-382 42-145 (183)
45 COG2453 CDC14 Predicted protei 98.2 4.4E-06 9.6E-11 85.1 8.0 75 312-386 68-146 (180)
46 KOG1716 Dual specificity phosp 98.0 3.1E-05 6.8E-10 84.3 10.1 119 266-393 79-202 (285)
47 smart00012 PTPc_DSPc Protein t 97.8 2.9E-05 6.3E-10 69.5 5.5 53 319-371 5-63 (105)
48 smart00404 PTPc_motif Protein 97.8 2.9E-05 6.3E-10 69.5 5.5 53 319-371 5-63 (105)
49 KOG1718 Dual specificity phosp 97.8 0.00013 2.9E-09 74.0 10.3 103 267-380 22-128 (198)
50 KOG1717 Dual specificity phosp 97.7 0.00011 2.3E-09 79.0 8.9 107 266-381 176-286 (343)
51 PRK13057 putative lipid kinase 97.1 0.0011 2.3E-08 72.0 7.6 104 695-812 2-109 (287)
52 PRK11914 diacylglycerol kinase 97.0 0.0039 8.4E-08 68.2 10.8 111 689-813 7-125 (306)
53 cd00047 PTPc Protein tyrosine 96.9 0.0026 5.5E-08 66.4 8.1 58 328-385 142-210 (231)
54 PRK00861 putative lipid kinase 96.9 0.0042 9.1E-08 67.8 9.9 109 690-813 2-117 (300)
55 smart00194 PTPc Protein tyrosi 96.8 0.0047 1E-07 65.7 9.1 57 328-384 170-236 (258)
56 PRK13054 lipid kinase; Reviewe 96.5 0.0082 1.8E-07 65.7 8.7 108 689-812 2-119 (300)
57 PRK13059 putative lipid kinase 96.3 0.016 3.6E-07 63.3 9.7 108 691-812 2-117 (295)
58 COG5599 PTP2 Protein tyrosine 96.3 0.003 6.5E-08 68.3 3.5 42 327-368 196-239 (302)
59 PRK13055 putative lipid kinase 96.3 0.025 5.5E-07 63.0 10.8 107 690-812 2-121 (334)
60 KOG2283 Clathrin coat dissocia 96.3 0.0055 1.2E-07 70.9 5.6 98 280-387 44-149 (434)
61 PHA02740 protein tyrosine phos 96.0 0.012 2.6E-07 65.0 6.4 23 346-368 220-242 (298)
62 PRK13337 putative lipid kinase 96.0 0.042 9.1E-07 60.3 10.5 106 691-812 2-118 (304)
63 PLN02727 NAD kinase 96.0 0.014 3E-07 72.3 7.2 180 424-610 409-614 (986)
64 TIGR03702 lip_kinase_YegS lipi 95.8 0.036 7.8E-07 60.5 9.3 105 692-812 1-115 (293)
65 PHA02742 protein tyrosine phos 95.8 0.014 2.9E-07 64.6 5.8 22 347-368 229-250 (303)
66 COG3199 Predicted inorganic po 95.7 0.015 3.3E-07 65.1 5.7 59 755-814 100-160 (355)
67 PRK12361 hypothetical protein; 95.7 0.044 9.5E-07 65.0 9.8 108 690-812 242-360 (547)
68 PLN02958 diacylglycerol kinase 95.5 0.067 1.5E-06 62.9 10.5 127 671-813 83-239 (481)
69 PHA02747 protein tyrosine phos 95.5 0.016 3.4E-07 64.4 4.8 21 348-368 230-250 (312)
70 PF00102 Y_phosphatase: Protei 95.3 0.043 9.4E-07 56.3 7.0 40 331-370 151-193 (235)
71 PRK15375 pathogenicity island 95.2 0.086 1.9E-06 62.0 9.9 65 331-396 439-518 (535)
72 PF00781 DAGK_cat: Diacylglyce 95.2 0.065 1.4E-06 51.5 7.4 105 692-812 1-118 (130)
73 PHA02746 protein tyrosine phos 95.1 0.026 5.6E-07 63.0 4.9 21 348-368 248-268 (323)
74 PHA02738 hypothetical protein; 95.0 0.029 6.3E-07 62.5 5.0 22 347-368 227-248 (320)
75 COG1597 LCB5 Sphingosine kinas 94.5 0.12 2.6E-06 57.2 8.3 107 690-812 2-119 (301)
76 smart00046 DAGKc Diacylglycero 94.3 0.15 3.3E-06 49.0 7.5 35 755-789 49-88 (124)
77 PLN02160 thiosulfate sulfurtra 94.2 0.19 4.2E-06 49.2 8.1 86 275-374 17-106 (136)
78 PLN02204 diacylglycerol kinase 94.1 0.51 1.1E-05 56.9 12.8 74 688-773 157-236 (601)
79 KOG0792 Protein tyrosine phosp 94.0 0.068 1.5E-06 66.7 5.6 36 332-367 1045-1083(1144)
80 KOG0793 Protein tyrosine phosp 93.3 1.2 2.5E-05 54.2 13.7 47 333-379 910-963 (1004)
81 COG5350 Predicted protein tyro 93.3 0.35 7.5E-06 49.2 8.1 79 285-367 30-113 (172)
82 PF13348 Y_phosphatase3C: Tyro 93.3 0.024 5.2E-07 48.9 -0.0 42 397-438 26-67 (68)
83 cd01523 RHOD_Lact_B Member of 93.2 0.33 7.1E-06 44.1 7.2 85 276-375 2-87 (100)
84 KOG0791 Protein tyrosine phosp 92.8 0.13 2.8E-06 58.1 4.9 46 325-370 261-310 (374)
85 KOG2386 mRNA capping enzyme, g 92.6 0.12 2.7E-06 59.1 4.4 102 276-383 49-161 (393)
86 cd01448 TST_Repeat_1 Thiosulfa 92.5 0.8 1.7E-05 43.0 9.1 95 276-375 3-106 (122)
87 cd01518 RHOD_YceA Member of th 92.4 0.52 1.1E-05 43.0 7.5 85 274-375 3-87 (101)
88 KOG0789 Protein tyrosine phosp 91.8 0.23 5E-06 56.1 5.5 23 346-368 298-320 (415)
89 cd01533 4RHOD_Repeat_2 Member 90.8 1 2.2E-05 41.7 7.7 82 273-375 10-92 (109)
90 PRK01415 hypothetical protein; 89.2 3.4 7.3E-05 45.1 11.1 170 181-374 15-196 (247)
91 KOG0790 Protein tyrosine phosp 89.1 0.31 6.6E-06 56.4 3.3 31 332-362 431-466 (600)
92 cd01519 RHOD_HSP67B2 Member of 88.9 1.3 2.8E-05 40.3 6.7 85 277-374 3-91 (106)
93 COG0607 PspE Rhodanese-related 87.4 1.9 4.1E-05 39.1 6.8 75 278-373 10-85 (110)
94 cd01444 GlpE_ST GlpE sulfurtra 86.1 3 6.4E-05 37.2 7.2 79 275-374 2-81 (96)
95 KOG4228 Protein tyrosine phosp 86.0 0.43 9.3E-06 60.3 2.3 32 332-363 712-746 (1087)
96 PF00581 Rhodanese: Rhodanese- 85.7 4.4 9.6E-05 36.5 8.2 80 276-367 1-86 (113)
97 cd01528 RHOD_2 Member of the R 85.2 2.8 6.1E-05 38.1 6.7 81 274-375 1-84 (101)
98 cd01449 TST_Repeat_2 Thiosulfa 84.9 1.9 4.1E-05 40.1 5.6 95 276-375 2-104 (118)
99 TIGR02483 PFK_mixed phosphofru 84.8 0.76 1.6E-05 51.7 3.3 54 754-810 93-156 (324)
100 cd01534 4RHOD_Repeat_3 Member 84.5 4.5 9.7E-05 36.5 7.6 78 276-374 2-81 (95)
101 PRK14071 6-phosphofructokinase 84.5 0.88 1.9E-05 51.9 3.7 54 755-810 107-170 (360)
102 cd01522 RHOD_1 Member of the R 84.4 5.9 0.00013 37.5 8.7 86 275-374 1-89 (117)
103 PRK06895 putative anthranilate 83.3 2.8 6.1E-05 43.1 6.5 75 691-789 2-82 (190)
104 cd01520 RHOD_YbbB Member of th 83.0 4.6 9.9E-05 38.8 7.4 86 275-374 1-112 (128)
105 KOG4471 Phosphatidylinositol 3 82.6 1.6 3.5E-05 52.2 4.9 27 344-370 371-397 (717)
106 PRK05600 thiamine biosynthesis 80.4 3.7 8E-05 47.1 6.7 85 274-374 272-357 (370)
107 PF06602 Myotub-related: Myotu 80.2 2.2 4.7E-05 48.6 4.8 27 345-371 229-255 (353)
108 KOG1530 Rhodanese-related sulf 79.9 5.3 0.00011 39.9 6.6 81 276-369 26-110 (136)
109 PRK00162 glpE thiosulfate sulf 79.8 5.8 0.00013 36.6 6.7 78 274-374 6-83 (108)
110 TIGR02482 PFKA_ATP 6-phosphofr 79.8 1.5 3.3E-05 48.9 3.3 54 754-809 90-153 (301)
111 cd01527 RHOD_YgaP Member of th 79.4 2.2 4.7E-05 38.6 3.6 74 274-370 3-76 (99)
112 cd01524 RHOD_Pyr_redox Member 79.2 5.8 0.00013 35.4 6.3 75 276-374 2-76 (90)
113 PRK06186 hypothetical protein; 79.2 4.2 9.2E-05 43.9 6.3 35 754-788 52-91 (229)
114 PRK06555 pyrophosphate--fructo 79.1 1.8 3.8E-05 50.3 3.6 55 754-810 111-180 (403)
115 cd01526 RHOD_ThiF Member of th 78.3 6.9 0.00015 37.1 6.9 86 274-374 9-97 (122)
116 CHL00101 trpG anthranilate syn 77.8 4.3 9.4E-05 41.8 5.7 75 693-789 2-82 (190)
117 PTZ00286 6-phospho-1-fructokin 77.6 2 4.4E-05 50.6 3.6 124 683-809 80-243 (459)
118 PRK07765 para-aminobenzoate sy 77.5 5.2 0.00011 42.3 6.3 79 692-789 2-86 (214)
119 cd00763 Bacterial_PFK Phosphof 77.4 2.2 4.9E-05 47.9 3.7 53 754-809 91-153 (317)
120 TIGR00566 trpG_papA glutamine 77.2 4.1 8.9E-05 42.0 5.3 74 693-789 2-82 (188)
121 PRK14072 6-phosphofructokinase 76.8 2.2 4.7E-05 49.7 3.5 53 754-808 102-169 (416)
122 PRK05320 rhodanese superfamily 76.6 6.1 0.00013 43.1 6.7 173 182-374 14-200 (257)
123 cd01530 Cdc25 Cdc25 phosphatas 75.7 8.4 0.00018 36.9 6.7 25 345-370 66-91 (121)
124 PRK06830 diphosphate--fructose 75.6 2.5 5.4E-05 49.7 3.6 124 683-809 73-239 (443)
125 KOG4435 Predicted lipid kinase 75.3 6.2 0.00013 45.7 6.4 87 752-849 113-212 (535)
126 PLN02564 6-phosphofructokinase 74.2 2.8 6.1E-05 49.7 3.6 124 683-809 80-243 (484)
127 cd01743 GATase1_Anthranilate_S 73.7 6.1 0.00013 40.2 5.5 36 754-789 41-81 (184)
128 PRK06774 para-aminobenzoate sy 73.6 5 0.00011 41.2 4.9 74 693-789 2-82 (191)
129 cd08194 Fe-ADH6 Iron-containin 71.6 7.2 0.00016 44.4 6.0 88 690-787 23-130 (375)
130 COG0205 PfkA 6-phosphofructoki 71.5 3.5 7.5E-05 47.1 3.4 118 689-809 1-156 (347)
131 PLN02884 6-phosphofructokinase 70.4 3.3 7.1E-05 48.3 2.9 124 682-809 45-210 (411)
132 PRK03202 6-phosphofructokinase 70.0 4.3 9.4E-05 45.7 3.7 53 754-809 92-154 (320)
133 PRK05670 anthranilate synthase 69.7 8.9 0.00019 39.4 5.7 75 693-789 2-82 (189)
134 PRK00142 putative rhodanese-re 69.6 10 0.00022 42.7 6.5 83 271-374 110-196 (314)
135 PF00365 PFK: Phosphofructokin 69.1 2.1 4.5E-05 47.3 1.0 117 691-810 1-155 (282)
136 cd01529 4RHOD_Repeats Member o 69.0 8.5 0.00018 34.7 4.8 29 345-375 54-82 (96)
137 PRK11784 tRNA 2-selenouridine 68.5 19 0.00041 41.1 8.4 27 346-374 87-114 (345)
138 PRK10287 thiosulfate:cyanide s 67.8 8 0.00017 36.6 4.5 66 288-374 20-85 (104)
139 PRK07053 glutamine amidotransf 67.8 13 0.00028 39.9 6.6 81 689-789 1-93 (234)
140 cd08193 HVD 5-hydroxyvalerate 67.8 8 0.00017 44.0 5.3 88 690-787 26-133 (376)
141 cd01447 Polysulfide_ST Polysul 67.3 26 0.00056 31.4 7.6 28 345-374 59-86 (103)
142 cd01525 RHOD_Kc Member of the 66.7 14 0.00031 33.5 5.8 86 275-374 1-90 (105)
143 cd00363 PFK Phosphofructokinas 66.5 4.3 9.3E-05 46.0 2.8 56 754-811 91-161 (338)
144 TIGR02981 phageshock_pspE phag 65.3 13 0.00028 34.9 5.3 68 286-374 16-83 (101)
145 TIGR03865 PQQ_CXXCW PQQ-depend 64.6 37 0.0008 34.5 8.8 97 274-374 37-142 (162)
146 KOG1089 Myotubularin-related p 64.5 11 0.00023 45.6 5.6 35 345-379 342-376 (573)
147 PRK09860 putative alcohol dehy 64.4 9.9 0.00021 43.6 5.2 76 690-775 31-107 (383)
148 cd08176 LPO Lactadehyde:propan 64.2 11 0.00023 43.0 5.5 88 690-787 28-135 (377)
149 PRK06490 glutamine amidotransf 63.6 11 0.00025 40.5 5.2 80 690-789 7-96 (239)
150 KOG0782 Predicted diacylglycer 63.4 17 0.00038 43.7 6.9 66 759-829 420-496 (1004)
151 PRK08857 para-aminobenzoate sy 62.3 17 0.00037 37.6 6.0 75 693-789 2-82 (193)
152 PLN02251 pyrophosphate-depende 61.9 7 0.00015 47.3 3.6 54 754-809 189-259 (568)
153 TIGR02477 PFKA_PPi diphosphate 61.6 7.4 0.00016 46.9 3.7 53 754-808 160-229 (539)
154 KOG1115 Ceramide kinase [Lipid 61.5 7.6 0.00016 45.1 3.5 93 671-775 129-237 (516)
155 PF04179 Init_tRNA_PT: Initiat 61.2 26 0.00057 41.5 8.0 74 286-368 317-397 (451)
156 TIGR01357 aroB 3-dehydroquinat 60.6 14 0.00031 41.4 5.5 91 690-787 20-115 (344)
157 PRK07085 diphosphate--fructose 60.1 8.2 0.00018 46.7 3.7 52 755-808 164-232 (555)
158 TIGR01815 TrpE-clade3 anthrani 60.1 18 0.00039 45.2 6.7 79 689-789 515-598 (717)
159 PLN03028 pyrophosphate--fructo 59.6 8.3 0.00018 47.1 3.7 33 754-786 172-209 (610)
160 cd08186 Fe-ADH8 Iron-containin 59.5 13 0.00028 42.6 5.0 76 690-775 26-103 (383)
161 cd08179 NADPH_BDH NADPH-depend 59.5 14 0.0003 42.2 5.2 76 690-775 23-100 (375)
162 cd01443 Cdc25_Acr2p Cdc25 enzy 59.1 39 0.00084 31.5 7.3 75 275-365 4-84 (113)
163 cd08175 G1PDH Glycerol-1-phosp 58.9 18 0.00039 40.7 6.0 89 690-787 23-112 (348)
164 PRK13566 anthranilate synthase 58.7 19 0.00041 44.9 6.6 79 689-789 525-608 (720)
165 cd08171 GlyDH-like2 Glycerol d 58.7 18 0.00039 40.8 5.9 96 691-796 23-121 (345)
166 PRK07411 hypothetical protein; 58.5 18 0.0004 41.7 6.0 83 274-374 283-367 (390)
167 cd08187 BDH Butanol dehydrogen 58.4 15 0.00033 41.9 5.3 88 690-787 28-136 (382)
168 cd00765 Pyrophosphate_PFK Phos 58.2 9 0.00019 46.3 3.6 54 754-809 165-235 (550)
169 PLN02723 3-mercaptopyruvate su 58.2 21 0.00046 40.0 6.3 44 329-374 251-294 (320)
170 PF04343 DUF488: Protein of un 58.2 17 0.00037 34.9 4.9 46 280-325 6-53 (122)
171 PRK07649 para-aminobenzoate/an 57.9 16 0.00036 38.0 5.1 74 693-789 2-82 (195)
172 COG2897 SseA Rhodanese-related 57.8 29 0.00063 38.8 7.2 91 276-371 159-257 (285)
173 cd08170 GlyDH Glycerol dehydro 57.6 23 0.00049 39.9 6.5 86 690-787 22-109 (351)
174 PRK11574 oxidative-stress-resi 57.6 37 0.00081 34.7 7.5 99 690-793 2-113 (196)
175 TIGR02478 6PF1K_euk 6-phosphof 57.5 9 0.00019 47.9 3.5 118 688-809 387-546 (745)
176 cd01521 RHOD_PspE2 Member of t 57.5 25 0.00055 32.6 5.8 81 272-374 7-91 (110)
177 cd08181 PPD-like 1,3-propanedi 57.5 17 0.00037 41.1 5.6 87 691-787 26-132 (357)
178 cd08185 Fe-ADH1 Iron-containin 57.4 20 0.00043 40.9 6.1 76 691-775 26-102 (380)
179 cd08178 AAD_C C-terminal alcoh 57.3 11 0.00025 43.2 4.2 76 690-775 21-97 (398)
180 PRK08250 glutamine amidotransf 56.5 21 0.00046 38.3 5.8 77 692-788 2-93 (235)
181 cd08192 Fe-ADH7 Iron-containin 56.4 12 0.00027 42.3 4.2 76 690-775 24-100 (370)
182 cd00764 Eukaryotic_PFK Phospho 56.3 9.9 0.00021 47.6 3.6 117 689-809 388-546 (762)
183 PRK00002 aroB 3-dehydroquinate 56.2 18 0.00039 41.0 5.4 91 690-787 31-126 (358)
184 cd08551 Fe-ADH iron-containing 56.1 14 0.0003 41.8 4.5 77 690-776 23-100 (370)
185 PRK11493 sseA 3-mercaptopyruva 55.8 49 0.0011 36.2 8.5 82 275-358 7-98 (281)
186 cd08169 DHQ-like Dehydroquinat 55.8 24 0.00051 40.1 6.2 92 690-787 23-117 (344)
187 KOG1116 Sphingosine kinase, in 55.4 35 0.00075 41.5 7.7 109 689-812 178-305 (579)
188 PRK10624 L-1,2-propanediol oxi 55.3 26 0.00057 40.1 6.6 75 690-774 30-105 (382)
189 PLN02335 anthranilate synthase 55.2 25 0.00055 37.4 6.0 77 690-789 18-101 (222)
190 cd03132 GATase1_catalase Type 55.1 48 0.001 32.0 7.5 94 691-789 2-105 (142)
191 PLN02834 3-dehydroquinate synt 55.0 20 0.00044 42.1 5.7 96 690-788 100-198 (433)
192 TIGR02638 lactal_redase lactal 54.5 18 0.0004 41.3 5.2 88 691-787 30-138 (379)
193 PRK10310 PTS system galactitol 54.2 1E+02 0.0022 28.6 9.1 91 691-811 3-94 (94)
194 PTZ00468 phosphofructokinase f 54.0 10 0.00023 49.6 3.4 44 754-797 799-864 (1328)
195 PF05925 IpgD: Enterobacterial 52.1 4.7 0.0001 48.0 0.0 23 346-368 452-474 (559)
196 PRK05380 pyrG CTP synthetase; 51.6 31 0.00068 41.6 6.6 36 753-788 341-381 (533)
197 TIGR03800 PLP_synth_Pdx2 pyrid 51.6 31 0.00067 35.7 5.8 36 754-789 35-80 (184)
198 PRK09629 bifunctional thiosulf 51.2 47 0.001 40.8 8.1 96 275-375 149-249 (610)
199 cd01531 Acr2p Eukaryotic arsen 51.0 54 0.0012 30.5 6.9 78 275-368 4-83 (113)
200 PF08357 SEFIR: SEFIR domain; 50.5 19 0.0004 35.3 3.9 78 691-776 1-79 (150)
201 PRK05637 anthranilate synthase 50.3 28 0.0006 36.8 5.4 76 691-789 2-83 (208)
202 PF00465 Fe-ADH: Iron-containi 50.1 22 0.00048 40.2 4.9 88 691-787 22-129 (366)
203 PRK15378 inositol phosphate ph 49.5 10 0.00023 44.8 2.2 19 351-369 460-478 (564)
204 PRK15454 ethanol dehydrogenase 49.5 19 0.00041 41.6 4.3 76 690-775 49-125 (395)
205 cd08183 Fe-ADH2 Iron-containin 49.3 43 0.00094 38.2 7.1 72 690-775 22-94 (374)
206 PF02126 PTE: Phosphotriestera 49.2 29 0.00062 39.1 5.5 42 278-321 42-83 (308)
207 cd08189 Fe-ADH5 Iron-containin 49.2 29 0.00063 39.6 5.7 76 690-775 26-102 (374)
208 cd08182 HEPD Hydroxyethylphosp 48.9 29 0.00064 39.3 5.6 73 690-775 23-96 (367)
209 cd08549 G1PDH_related Glycerol 48.6 32 0.00069 38.7 5.8 86 691-787 25-112 (332)
210 TIGR00337 PyrG CTP synthase. C 48.4 37 0.00081 41.0 6.5 84 690-788 289-381 (525)
211 cd08195 DHQS Dehydroquinate sy 48.4 26 0.00057 39.4 5.1 91 690-787 24-119 (345)
212 PRK09423 gldA glycerol dehydro 47.6 31 0.00068 39.2 5.6 85 691-787 30-116 (366)
213 cd07766 DHQ_Fe-ADH Dehydroquin 47.0 27 0.00058 38.8 4.9 86 690-787 23-112 (332)
214 PRK01269 tRNA s(4)U8 sulfurtra 46.9 28 0.0006 41.4 5.2 28 345-374 447-474 (482)
215 cd08173 Gro1PDH Sn-glycerol-1- 46.6 45 0.00097 37.5 6.6 81 691-787 26-110 (339)
216 PRK13527 glutamine amidotransf 46.3 47 0.001 34.5 6.3 36 754-789 42-87 (200)
217 PRK13525 glutamine amidotransf 46.3 51 0.0011 34.2 6.4 36 754-789 37-82 (189)
218 PRK06203 aroB 3-dehydroquinate 46.0 44 0.00096 38.7 6.5 96 690-787 42-145 (389)
219 cd01744 GATase1_CPSase Small c 45.7 26 0.00057 35.6 4.2 34 755-788 39-78 (178)
220 COG1819 Glycosyl transferases, 45.6 1.4E+02 0.0031 34.6 10.6 121 685-812 231-369 (406)
221 TIGR03167 tRNA_sel_U_synt tRNA 45.3 47 0.001 37.4 6.4 24 349-374 76-100 (311)
222 cd08177 MAR Maleylacetate redu 45.2 25 0.00054 39.5 4.3 85 690-787 23-109 (337)
223 PF00117 GATase: Glutamine ami 45.2 19 0.00041 36.5 3.1 37 753-789 40-82 (192)
224 TIGR02478 6PF1K_euk 6-phosphof 45.0 17 0.00038 45.5 3.3 55 754-810 93-179 (745)
225 COG1454 EutG Alcohol dehydroge 44.9 23 0.0005 41.0 4.0 76 690-775 29-105 (377)
226 PRK08762 molybdopterin biosynt 44.9 46 0.00099 38.1 6.4 78 275-374 5-82 (376)
227 PF13685 Fe-ADH_2: Iron-contai 44.9 94 0.002 34.1 8.5 91 689-795 18-117 (250)
228 cd03174 DRE_TIM_metallolyase D 44.5 1.4E+02 0.0031 31.6 9.7 80 278-358 119-201 (265)
229 cd08191 HHD 6-hydroxyhexanoate 44.1 60 0.0013 37.3 7.2 77 691-776 23-99 (386)
230 PTZ00468 phosphofructokinase f 43.7 20 0.00043 47.2 3.6 43 754-796 195-254 (1328)
231 COG0504 PyrG CTP synthase (UTP 43.3 46 0.001 39.9 6.1 33 756-788 344-381 (533)
232 CHL00188 hisH imidazole glycer 42.4 68 0.0015 34.0 6.8 37 755-792 39-87 (210)
233 PRK13181 hisH imidazole glycer 42.0 43 0.00094 34.6 5.2 35 754-789 36-82 (199)
234 PRK07878 molybdopterin biosynt 41.9 52 0.0011 38.0 6.3 80 274-374 288-368 (392)
235 cd00158 RHOD Rhodanese Homolog 41.7 53 0.0011 28.1 4.9 25 345-370 48-72 (89)
236 TIGR01382 PfpI intracellular p 41.7 77 0.0017 31.3 6.7 41 755-795 60-113 (166)
237 PF06283 ThuA: Trehalose utili 41.3 74 0.0016 33.2 6.8 98 692-813 1-109 (217)
238 PTZ00287 6-phosphofructokinase 40.7 22 0.00047 47.2 3.2 53 755-809 928-997 (1419)
239 cd01746 GATase1_CTP_Synthase T 40.4 76 0.0017 34.3 6.9 36 754-789 54-94 (235)
240 cd08188 Fe-ADH4 Iron-containin 40.1 38 0.00082 38.7 4.8 75 690-774 28-103 (377)
241 PRK13143 hisH imidazole glycer 39.9 97 0.0021 32.2 7.4 71 692-789 2-81 (200)
242 TIGR03405 Phn_Fe-ADH phosphona 38.9 36 0.00077 38.6 4.3 76 691-775 24-99 (355)
243 cd00764 Eukaryotic_PFK Phospho 38.7 27 0.00058 44.0 3.5 119 689-810 2-182 (762)
244 KOG4228 Protein tyrosine phosp 38.6 30 0.00066 44.7 4.0 46 112-157 679-733 (1087)
245 TIGR01426 MGT glycosyltransfer 38.5 1E+02 0.0022 34.7 7.9 57 751-811 287-359 (392)
246 cd08172 GlyDH-like1 Glycerol d 38.4 49 0.0011 37.3 5.3 84 690-787 23-108 (347)
247 PRK01175 phosphoribosylformylg 38.3 74 0.0016 35.0 6.5 84 691-794 4-109 (261)
248 cd08180 PDD 1,3-propanediol de 37.9 75 0.0016 35.6 6.6 87 690-787 22-117 (332)
249 COG4069 Uncharacterized protei 37.6 29 0.00063 39.1 3.2 37 751-788 262-298 (367)
250 PRK12564 carbamoyl phosphate s 36.5 32 0.00069 39.6 3.4 75 690-789 177-258 (360)
251 cd03785 GT1_MurG MurG is an N- 36.1 1.7E+02 0.0037 31.8 8.9 58 750-811 247-324 (350)
252 cd07943 DRE_TIM_HOA 4-hydroxy- 36.0 2.5E+02 0.0055 30.4 10.1 81 277-358 115-196 (263)
253 cd01532 4RHOD_Repeat_1 Member 35.4 67 0.0015 28.8 4.8 15 346-361 49-63 (92)
254 cd08199 EEVS 2-epi-5-epi-valio 35.2 76 0.0017 36.2 6.2 92 689-787 25-122 (354)
255 cd08550 GlyDH-like Glycerol_de 35.1 61 0.0013 36.6 5.4 81 691-787 23-109 (349)
256 PRK11493 sseA 3-mercaptopyruva 35.0 53 0.0011 35.9 4.7 43 331-375 215-257 (281)
257 cd05566 PTS_IIB_galactitol PTS 34.7 2.2E+02 0.0049 25.4 8.0 87 691-808 1-88 (89)
258 PRK00843 egsA NAD(P)-dependent 34.3 1.2E+02 0.0026 34.4 7.6 81 691-787 35-119 (350)
259 TIGR01737 FGAM_synth_I phospho 34.3 81 0.0018 33.6 5.9 72 692-789 2-88 (227)
260 cd08197 DOIS 2-deoxy-scyllo-in 34.0 54 0.0012 37.5 4.8 88 690-788 23-119 (355)
261 PLN02327 CTP synthase 33.7 90 0.002 38.1 6.7 35 753-788 360-400 (557)
262 PRK09393 ftrA transcriptional 33.7 93 0.002 34.4 6.4 46 753-798 73-130 (322)
263 PRK13805 bifunctional acetalde 33.5 63 0.0014 41.2 5.7 78 689-775 479-558 (862)
264 KOG2387 CTP synthase (UTP-ammo 33.3 64 0.0014 38.3 5.1 36 753-788 361-401 (585)
265 cd01745 GATase1_2 Subgroup of 33.0 55 0.0012 33.8 4.2 68 706-789 20-110 (189)
266 PRK12838 carbamoyl phosphate s 33.0 83 0.0018 36.2 6.0 74 690-789 167-247 (354)
267 PF07899 Frigida: Frigida-like 32.8 47 0.001 37.2 3.9 103 94-227 148-250 (290)
268 PRK11366 puuD gamma-glutamyl-g 31.6 79 0.0017 34.4 5.3 36 754-789 60-117 (254)
269 TIGR01368 CPSaseIIsmall carbam 31.4 46 0.00099 38.3 3.6 73 691-789 174-253 (358)
270 cd01742 GATase1_GMP_Synthase T 31.3 48 0.001 33.4 3.4 36 754-789 40-80 (181)
271 cd07939 DRE_TIM_NifV Streptomy 31.1 3.8E+02 0.0083 29.0 10.5 78 280-358 116-193 (259)
272 PRK08007 para-aminobenzoate sy 30.5 85 0.0018 32.4 5.1 74 693-789 2-82 (187)
273 CHL00197 carA carbamoyl-phosph 30.3 1E+02 0.0023 35.9 6.3 75 690-789 192-273 (382)
274 TIGR01823 PabB-fungal aminodeo 30.0 1.1E+02 0.0024 38.6 6.8 36 754-789 52-96 (742)
275 TIGR03217 4OH_2_O_val_ald 4-hy 29.5 3.7E+02 0.008 30.7 10.3 82 276-358 116-199 (333)
276 PRK07567 glutamine amidotransf 29.5 38 0.00083 36.6 2.5 36 754-789 50-103 (242)
277 cd07944 DRE_TIM_HOA_like 4-hyd 29.4 3.6E+02 0.0078 29.6 10.0 79 279-358 114-194 (266)
278 PRK11249 katE hydroperoxidase 29.1 1.9E+02 0.004 36.8 8.5 99 685-788 592-700 (752)
279 cd01741 GATase1_1 Subgroup of 28.8 81 0.0018 32.0 4.6 37 753-789 44-91 (188)
280 PRK13146 hisH imidazole glycer 28.2 1.7E+02 0.0037 30.8 7.0 36 754-789 40-87 (209)
281 smart00450 RHOD Rhodanese Homo 28.2 1.2E+02 0.0026 26.1 5.1 29 345-375 54-82 (100)
282 TIGR01133 murG undecaprenyldip 28.2 2.6E+02 0.0057 30.3 8.7 60 748-811 243-321 (348)
283 cd01537 PBP1_Repressors_Sugar_ 28.1 1.3E+02 0.0028 30.4 5.9 87 692-789 1-89 (264)
284 PF13380 CoA_binding_2: CoA bi 27.9 1.3E+02 0.0028 28.9 5.5 87 691-788 1-88 (116)
285 COG0693 ThiJ Putative intracel 27.7 2E+02 0.0043 29.1 7.2 101 690-794 2-114 (188)
286 PF13528 Glyco_trans_1_3: Glyc 27.3 1.4E+02 0.0031 32.1 6.5 36 748-787 243-278 (318)
287 cd03784 GT1_Gtf_like This fami 27.2 2.8E+02 0.006 31.2 8.9 60 748-811 297-372 (401)
288 PRK09629 bifunctional thiosulf 26.2 2.6E+02 0.0056 34.6 8.9 88 275-374 11-107 (610)
289 PRK05234 mgsA methylglyoxal sy 26.0 4.2E+02 0.009 26.7 8.9 44 689-735 3-48 (142)
290 cd03134 GATase1_PfpI_like A ty 25.4 2.2E+02 0.0048 27.9 6.9 36 755-790 62-105 (165)
291 cd08198 DHQS-like2 Dehydroquin 25.4 1.3E+02 0.0029 34.8 6.0 96 689-788 29-134 (369)
292 PRK09065 glutamine amidotransf 24.4 55 0.0012 35.1 2.6 36 754-789 53-98 (237)
293 PRK08195 4-hyroxy-2-oxovalerat 24.2 5E+02 0.011 29.7 10.2 82 276-358 117-200 (337)
294 PRK14042 pyruvate carboxylase 24.1 6.5E+02 0.014 31.3 11.7 134 218-358 63-208 (596)
295 COG2012 RPB5 DNA-directed RNA 23.9 18 0.00039 33.2 -1.0 18 77-94 36-63 (80)
296 PRK11858 aksA trans-homoaconit 23.5 6E+02 0.013 29.4 10.8 79 279-358 121-199 (378)
297 COG0745 OmpR Response regulato 23.1 7.3E+02 0.016 26.7 10.7 99 692-812 2-119 (229)
298 cd03129 GAT1_Peptidase_E_like 23.0 1.7E+02 0.0038 30.4 5.9 88 689-790 28-125 (210)
299 TIGR00315 cdhB CO dehydrogenas 23.0 2.9E+02 0.0063 28.6 7.3 54 754-810 99-161 (162)
300 cd03128 GAT_1 Type 1 glutamine 22.7 83 0.0018 25.4 2.8 38 753-790 44-90 (92)
301 cd03146 GAT1_Peptidase_E Type 22.6 2.7E+02 0.0058 29.3 7.2 83 689-790 30-125 (212)
302 PRK00758 GMP synthase subunit 22.4 1.3E+02 0.0028 30.7 4.7 32 757-789 43-77 (184)
303 cd08184 Fe-ADH3 Iron-containin 21.9 1.5E+02 0.0032 33.9 5.5 20 755-775 81-100 (347)
304 cd01748 GATase1_IGP_Synthase T 21.7 1.5E+02 0.0032 30.6 5.0 35 755-789 36-81 (198)
305 PRK07414 cob(I)yrinic acid a,c 21.4 30 0.00064 36.2 -0.2 42 346-387 20-61 (178)
306 TIGR00888 guaA_Nterm GMP synth 21.3 49 0.0011 33.8 1.4 34 756-789 42-80 (188)
307 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.3 3.6E+02 0.0077 29.7 8.1 80 278-358 122-203 (275)
308 cd01535 4RHOD_Repeat_4 Member 21.3 1.9E+02 0.0041 28.8 5.5 33 333-368 37-69 (145)
309 COG0371 GldA Glycerol dehydrog 21.2 2.3E+02 0.0049 33.0 6.7 41 754-795 83-126 (360)
310 PRK03619 phosphoribosylformylg 20.9 2.4E+02 0.0052 30.0 6.5 36 754-789 40-89 (219)
311 TIGR02660 nifV_homocitr homoci 20.5 7.2E+02 0.016 28.5 10.6 79 279-358 118-196 (365)
312 cd07940 DRE_TIM_IPMS 2-isoprop 20.5 7.1E+02 0.015 27.1 10.1 78 280-358 120-200 (268)
313 PRK09389 (R)-citramalate synth 20.4 6.4E+02 0.014 30.4 10.5 78 280-358 120-197 (488)
314 cd00861 ProRS_anticodon_short 20.4 2.8E+02 0.006 24.6 5.9 62 690-765 1-64 (94)
315 cd06267 PBP1_LacI_sugar_bindin 20.4 2.6E+02 0.0057 28.3 6.5 84 693-788 2-87 (264)
316 TIGR02090 LEU1_arch isopropylm 20.3 7.9E+02 0.017 28.2 10.9 80 278-358 116-195 (363)
317 PF00682 HMGL-like: HMGL-like 20.2 4.9E+02 0.011 27.4 8.7 77 279-356 113-190 (237)
318 COG0518 GuaA GMP synthase - Gl 20.1 4.4E+02 0.0095 28.0 8.1 35 755-789 45-89 (198)
319 COG1054 Predicted sulfurtransf 20.1 2.8E+02 0.0062 31.6 6.9 81 269-369 109-193 (308)
No 1
>PLN02727 NAD kinase
Probab=100.00 E-value=1.2e-212 Score=1837.04 Aligned_cols=852 Identities=70% Similarity=1.060 Sum_probs=793.3
Q ss_pred cccCCCCccccccc---cccccCCceeEeeeeeEeeccchhhhhccceEEEEeeeccccccccCccccccccCCCCCCCc
Q 002791 7 MQRLSSPATGILCS---SKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPW 83 (881)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (881)
|.|+ +|+|||++. ++++++++||++|||||. +|+...||++||||+|+||++||++||||||+||+||+|||||
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (986)
T PLN02727 1 MARL-SPVTGILSSCLCSVKLNSDGKLLGFGFGFW--QRKEPLKRRLKFVVSAELSKSFSSNLGLDSQNFQSRDLSQLPW 77 (986)
T ss_pred CCCC-CCccccccccccceeeccccceeccchhhh--hccHHHHhhhhheehhhhhhccccccCcccccccccchhcCcc
Confidence 5788 999999744 999999999999999984 3444459999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHhhhhhHHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeehhhhHHHhhhcCCccccccc
Q 002791 84 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGR 163 (881)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~g~~~v~s~~ 163 (881)
|||||||||||||||||||+|||||+|||+|||||+||||+|+|||++||||.|||||+++||||+++||+||.||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r 157 (986)
T PLN02727 78 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGR 157 (986)
T ss_pred ccCCCccHHHHhhhhhHHHHHHHHHHHHHHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCcccchhhhhhhhhHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccCCCCCCCCCCCCc
Q 002791 164 SSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHT 243 (881)
Q Consensus 164 ~~~~~~f~~~~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~l~v~rkLqr~~~~~~d~g~pr~~gyp~~~ 243 (881)
+++|++|+++|++.||+++||||+||.+||+|||+||++|++||+|+++||++||||||||+|+|||.||||.+||||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~~ 237 (986)
T PLN02727 158 SSIMSSFRGSEVSAMEDKLPPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCHT 237 (986)
T ss_pred hhhhhhcccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEecCCccccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEee
Q 002791 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (881)
Q Consensus 244 ~i~Nw~~V~ls~~~~~~~~~~~e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIP 323 (881)
+|+||.+||++++++|+.+.+++..+|||+||+++++++|+++|||||||||++.++..++...++++++..|++|+|+|
T Consensus 238 ~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIP 317 (986)
T PLN02727 238 LFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIP 317 (986)
T ss_pred cccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999999873345555567889999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCC-CHHHHHHHhhhcccccccchHHHHHHhh
Q 002791 324 VEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR-CASQISGQTITSNDVLLKDSTRTRKLKA 402 (881)
Q Consensus 324 V~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv-s~ddIiaDYL~s~~~l~~~~~~~~k~~~ 402 (881)
|.+...|+++++++|++++++..++|||+||++|.||||+|+++|+.++.. ...++. +...
T Consensus 318 Vs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~~------------------~~~~ 379 (986)
T PLN02727 318 VEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLLG------------------QNSV 379 (986)
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccchhhhc------------------cccc
Confidence 988899999999999999966789999999999999999999999997433 232221 1122
Q ss_pred hhhhhhhhhccchhHHhHHhhhccccccccccccchhccccCCCcccc-cccccccccchhhccccCccccccccccCCc
Q 002791 403 SAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481 (881)
Q Consensus 403 ~~~~~~l~s~~g~ie~~ld~~~~~~~~~~e~~r~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (881)
+.....+.+++|++++.+++.++.++.+.+...+-.+++.+++++++| +.++|++...+++. +++++++||++|+|||
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 458 (986)
T PLN02727 380 VNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDPL 458 (986)
T ss_pred cccCcccccccCccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccceeeeecCcc
Confidence 233445679999999999999999999999999999999999999999 99999999999998 8889999999999999
Q ss_pred cccCCCCcccchHHHhhhhhccccCCCccccccccccccCC----------ccccCCCCccccccccccccccCCCCCCC
Q 002791 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLSP 551 (881)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (881)
|||+|||||||||||++|||+||++|++|+|||+|+|++|| ++|++.+++++++|+++||++++++++++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~ 538 (986)
T PLN02727 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSP 538 (986)
T ss_pred cccCCCcccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCc
Confidence 99999999999999999999999999999999999999998 77999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccccCCccCccccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCC-Cc
Q 002791 552 NHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-PI 630 (881)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 630 (881)
+.|++.+.+.|.+||++++|+|++++.++..++.++++.+.+++|+++++.++++++.++++.+||++++..+||++ +|
T Consensus 539 d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~~ 618 (986)
T PLN02727 539 KYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAI 618 (986)
T ss_pred cccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCcccccccccccccccCCccccccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCCcccccccceeeecccccceeeeeecCcceeeeeecCCcccccCCchhhhhcccccCCcEEEEEecCChhHHHHHHHH
Q 002791 631 VGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710 (881)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~rtd~~sc~r~~~~~s~~~~~~pstq~~~L~W~~~pkkVlIV~K~~~ea~e~a~eL 710 (881)
|||||||+|||||||+|||++||++||||||||||.|++|+++|+|||+||++|+|++|+++|+||+|+++++.+.+.+|
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~eL 698 (986)
T PLN02727 619 EGNMCASATGVVRVQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698 (986)
T ss_pred cccccccccccEEeeccCCcceEEEEecCcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCc
Q 002791 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSL 790 (881)
Q Consensus 711 ~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G~L 790 (881)
++||.+++|++|++|++.++.+...+.++...+++..+..++.+.+|+||+||||||||+|+|++....+||||||+|+|
T Consensus 699 ~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred HHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 99999856999999999887664445543344444444556667899999999999999999999999999999999999
Q ss_pred ccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEEEccCCCCceEEEEEEECCeEE
Q 002791 791 GFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870 (881)
Q Consensus 791 GFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVVI~Rg~~~~li~ieVyIDG~~l 870 (881)
||||+++++++++.|+++++|+|.++|+.+++|++|+|++.++|+.++...++|||||||.|+..++|+.++|||||+++
T Consensus 779 GFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~L~~~V~r~g~~i~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l 858 (986)
T PLN02727 779 GFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 858 (986)
T ss_pred cccccCCHHHHHHHHHHHHcCCccccccccceeeEEEEEEecCCcccccccceEEEEEEEecCCCccEEEEEEEECCEEe
Confidence 99999999999999999999999766678899999999998888765322468999999999999999999999999999
Q ss_pred EEEe-cCeeee
Q 002791 871 TKFG-SSLLGA 880 (881)
Q Consensus 871 t~~~-ddgI~a 880 (881)
++|+ ||+|||
T Consensus 859 ~tyrgDGLIVS 869 (986)
T PLN02727 859 TKVQGDGVIVA 869 (986)
T ss_pred EEeecceEEEE
Confidence 9996 555554
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-33 Score=304.98 Aligned_cols=214 Identities=36% Similarity=0.578 Sum_probs=170.5
Q ss_pred ceeeeeecCCcccccCCchhhhhcccccCCcEEEEEecCChhHHHHHHHHHHHHhcCC-CeEEEEccchhhhh--hcC--
Q 002791 661 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIF--ARI-- 735 (881)
Q Consensus 661 sc~r~~~~~s~~~~~~pstq~~~L~W~~~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~-GveV~vE~~~~~~l--~~~-- 735 (881)
||+++....+...-.-+...+|.+.|-+++++|+|.+|.+....+..+|+++||.+.. .+.|+++.++.+.. ...
T Consensus 65 sn~~~~~~~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~~ 144 (409)
T KOG2178|consen 65 SNSRELMSNVAAVRSIQKSLSQRLIWLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGNL 144 (409)
T ss_pred ccchhhhhhhhhhhhccchhhhchhccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccch
Confidence 5566533333333344556778999999999988888887789999999999998764 59999999887643 100
Q ss_pred ----CCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcC
Q 002791 736 ----PGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (881)
Q Consensus 736 ----p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G 811 (881)
.....+..+......++.+.+|+|||||||||+|+|+++|+...|||+.|++|+|||||+|+++++++.|.++++|
T Consensus 145 ~e~~~~~~~i~y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~ 224 (409)
T KOG2178|consen 145 DESFGVKERILYWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNG 224 (409)
T ss_pred hhcccchhceEeeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhcC
Confidence 0011111111111356778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEeeEEEEEEEeCCeecC---CCcceeEeEEEEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 812 NNTLDGVYITLRMRLCCEIFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 812 ~y~~~G~~Ie~R~rL~v~v~r~Gk~~~---~~~~~ALNEVVI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
+ ..+..||||+|++.|.++... ...+++||||+|+||++++|+.+++|+||+++|++++||+|
T Consensus 225 ~-----~~v~lR~RL~C~i~rk~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGli 290 (409)
T KOG2178|consen 225 R-----AAVNLRMRLRCSLKRKDLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLI 290 (409)
T ss_pred c-----ceEeeeeeEEEEEEEecccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEE
Confidence 8 468999999999998665431 12689999999999999999999999999999999655554
No 3
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=8.2e-33 Score=312.81 Aligned_cols=203 Identities=38% Similarity=0.653 Sum_probs=162.4
Q ss_pred cccCCchhhhhcccccCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcC-CCCccceeeec-cCc
Q 002791 673 AFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI-PGFGFVQTFYL-QDT 749 (881)
Q Consensus 673 ~~~~pstq~~~L~W~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~-p~~~~v~~f~~-~~~ 749 (881)
.-+.+|++|..|.|.++|++|+||.|+++ ++.+.+.++++||.+++|++|++++.....+... +..+....+.. .+.
T Consensus 177 ~~~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~ 256 (508)
T PLN02935 177 TTAERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEI 256 (508)
T ss_pred eeccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchh
Confidence 34567889999999999999999999987 6889999999999844699999988765433110 00000100000 011
Q ss_pred cccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEE
Q 002791 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCE 829 (881)
Q Consensus 750 ~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~ 829 (881)
.++..++|+||+||||||||+|+|.+....+||||||+|+|||||+++++++++.|+++++|+| .+++|+||+|.
T Consensus 257 ~~l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~y-----~Ie~R~~L~~~ 331 (508)
T PLN02935 257 LLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPI-----SITLRHRLQCH 331 (508)
T ss_pred hhcccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCCc-----eEEEEeEEEEE
Confidence 2244579999999999999999999999999999999999999999999999999999999995 69999999999
Q ss_pred EEeCCeecC---CCcceeEeEEEEccCCCCceEEEEEEECCeEEEEEe-cCeeee
Q 002791 830 IFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKFG-SSLLGA 880 (881)
Q Consensus 830 v~r~Gk~~~---~~~~~ALNEVVI~Rg~~~~li~ieVyIDG~~lt~~~-ddgI~a 880 (881)
+.++++... ...++|||||||.|+..++|+.++|||||+++++|+ ||+|||
T Consensus 332 v~~~~~~~~~~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVS 386 (508)
T PLN02935 332 IIRDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILS 386 (508)
T ss_pred EEcCCceecccccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEe
Confidence 987664321 013579999999999999999999999999999996 555554
No 4
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.97 E-value=4.5e-31 Score=284.29 Aligned_cols=173 Identities=20% Similarity=0.335 Sum_probs=147.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~ 768 (881)
++++|+|+.|+.+++.+.+.++.+||.+ +|+++++++..++.+. .+++ ...++.+++|+||+|||||||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILD-LPGY---------GLDELFKISDFLISLGGDGTL 77 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhc-cccc---------chhhcccCCCEEEEECCCHHH
Confidence 4778999999988889999999999987 6999999887655442 1111 112344579999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEE
Q 002791 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (881)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEV 848 (881)
|+|+|.+...++||||||+|+||||+++++++++++|+++++|+| .+++|++|+|++.++++.. ...+||||+
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y-----~ie~r~~L~~~v~~~~~~~--~~~~AlNev 150 (287)
T PRK14077 78 ISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF-----EIEKPYMLSVFLEKKQGKI--LEKLAFNDV 150 (287)
T ss_pred HHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC-----eEEEEEEEEEEEEeCCceE--EEEEEeeee
Confidence 999999999999999999999999999999999999999999995 5899999999997666433 135799999
Q ss_pred EEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 849 VVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 849 VI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
+|.|+..++|+.+++||||+++++|++||||
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlI 181 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVI 181 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEE
Confidence 9999999999999999999999999755554
No 5
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.97 E-value=8.1e-31 Score=284.43 Aligned_cols=183 Identities=25% Similarity=0.305 Sum_probs=148.4
Q ss_pred cCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhc-CCCCc--cceeeeccCccccCCCccEEEEEc
Q 002791 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFG--FVQTFYLQDTSDLHERVDFVACLG 763 (881)
Q Consensus 688 ~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~-~p~~~--~v~~f~~~~~~dl~~~~DlVIvLG 763 (881)
+++++|+||.|+++ ++.+.+.++++||.+ +|++|++++.....+.. .+..+ .....+. ...++.+++|+||+||
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD-ADPDAADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc-chhhcccCCCEEEEEc
Confidence 57889999999886 688999999999987 69999998765443321 01000 0000000 0123445789999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcce
Q 002791 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFD 843 (881)
Q Consensus 764 GDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ 843 (881)
||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+| .+++|++|+|++.++|+... ..+
T Consensus 81 GDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y-----~i~~R~~L~~~v~~~g~~~~--~~~ 153 (306)
T PRK03372 81 GDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY-----RVEERMTLDVTVRVGGEIVW--RGW 153 (306)
T ss_pred CCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEEEECCEEEe--eee
Confidence 99999999999999999999999999999999999999999999999995 68999999999988877542 357
Q ss_pred eEeEEEEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 844 VLNEVVVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 844 ALNEVVI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
||||+||.|+..++|+.++|+|||+++++|++||||
T Consensus 154 ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlI 189 (306)
T PRK03372 154 ALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVL 189 (306)
T ss_pred EEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEE
Confidence 999999999999999999999999999999755544
No 6
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.97 E-value=1.1e-30 Score=282.48 Aligned_cols=180 Identities=23% Similarity=0.382 Sum_probs=147.7
Q ss_pred cccCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhh---hhh-cCCCCccceeeeccCccccCCCccEEE
Q 002791 686 WKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHD---IFA-RIPGFGFVQTFYLQDTSDLHERVDFVA 760 (881)
Q Consensus 686 W~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~---~l~-~~p~~~~v~~f~~~~~~dl~~~~DlVI 760 (881)
|.+++++|+|+.|+++ ++.+.+.++.+||.+ +|+++++++.... .+. ..++.. ..+..++...+|+||
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~D~vi 73 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGCH------IVNKTELGQYCDLVA 73 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhcccccccc------ccchhhcCcCCCEEE
Confidence 4567889999999887 688999999999987 6999999764221 110 000100 011234445799999
Q ss_pred EEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCC
Q 002791 761 CLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGK 840 (881)
Q Consensus 761 vLGGDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~ 840 (881)
+||||||||+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++|++|++++.++|+...
T Consensus 74 ~lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~v~~~~~~~~-- 146 (296)
T PRK04539 74 VLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKY-----LAEERILIEAALIREGKTAE-- 146 (296)
T ss_pred EECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEEEECCeeee--
Confidence 99999999999999998999999999999999999999999999999999995 58999999999988776542
Q ss_pred cceeEeEEEEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 841 VFDVLNEVVVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 841 ~~~ALNEVVI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
..+||||++|.|+..++|+.++++|||+++++|++||+|
T Consensus 147 ~~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlI 185 (296)
T PRK04539 147 RALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLI 185 (296)
T ss_pred eeeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEE
Confidence 357999999999999999999999999999999655544
No 7
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.97 E-value=4.5e-30 Score=278.59 Aligned_cols=181 Identities=19% Similarity=0.230 Sum_probs=145.8
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCc--c-ceeeeccCccccCCCccEEEEEcCch
Q 002791 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG--F-VQTFYLQDTSDLHERVDFVACLGGDG 766 (881)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~--~-v~~f~~~~~~dl~~~~DlVIvLGGDG 766 (881)
++|+|+.|+.+ ++.+.+.++.+||.+ +|++++++++.++.+. .+... . -......+..++.+++|++|+|||||
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG 79 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILG-YANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDG 79 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-ccccccccccccccccChhhcccCcCEEEEEeCcH
Confidence 57999999887 688999999999987 6999999876544332 11000 0 00000011133445789999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEe
Q 002791 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (881)
Q Consensus 767 T~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALN 846 (881)
|||+|+|.+...++||||||+|+|||||+++++++++.|+++++|+| .+++|+||+|++.++++... ..+|||
T Consensus 80 TlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y-----~ie~r~~L~~~v~~~~~~~~--~~~ALN 152 (305)
T PRK02649 80 TVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY-----TIEERTMLTVSVMRGDQLRW--EALSLN 152 (305)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc-----EEEEeeeEEEEEEECCccee--eeeeee
Confidence 99999999999999999999999999999999999999999999995 69999999999987766432 357999
Q ss_pred EEEEccCCCCceEEEEEEECCeEEEEEecCe-eee
Q 002791 847 EVVVDRGSNPYLSKIECYEHDRLITKFGSSL-LGA 880 (881)
Q Consensus 847 EVVI~Rg~~~~li~ieVyIDG~~lt~~~ddg-I~a 880 (881)
|++|.|+..++|+.++++|||+++++|++|| |||
T Consensus 153 evvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVs 187 (305)
T PRK02649 153 EMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILS 187 (305)
T ss_pred eeeeecCCCccEEEEEEEECCEEEEEEecCeEEEe
Confidence 9999999999999999999999999996555 444
No 8
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.97 E-value=7.9e-30 Score=275.33 Aligned_cols=178 Identities=21% Similarity=0.322 Sum_probs=147.7
Q ss_pred ccCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc
Q 002791 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (881)
Q Consensus 687 ~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGD 765 (881)
....++|+||.|+++ ++.+.+.++.+||.+ +|++++++++....++ .... ...+..++.+++|+||+||||
T Consensus 2 ~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~d~vi~lGGD 73 (292)
T PRK03378 2 NNHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQ-LKNV------KTGTLAEIGQQADLAIVVGGD 73 (292)
T ss_pred CccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-cccc------cccchhhcCCCCCEEEEECCc
Confidence 345789999999887 688999999999987 6999999876544321 1100 001123445579999999999
Q ss_pred hHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeE
Q 002791 766 GVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845 (881)
Q Consensus 766 GT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~AL 845 (881)
||||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+| .+++|++|++++.++++... ..+||
T Consensus 74 GT~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~aL 146 (292)
T PRK03378 74 GNMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHY-----ISEKRFLLEAQVCRHGQQKR--ISTAI 146 (292)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCc-----eEEEEEEEEEEEEeCCceEE--eEEEE
Confidence 999999999998899999999999999999999999999999999995 68999999999987665431 36899
Q ss_pred eEEEEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 846 NEVVVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 846 NEVVI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
||+||.++..++|+.++++|||+++++|++||||
T Consensus 147 Ndvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlI 180 (292)
T PRK03378 147 NEVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLI 180 (292)
T ss_pred EEEEEccCCCccEEEEEEEECCEEEEEEEccEEE
Confidence 9999999999999999999999999999655544
No 9
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.97 E-value=1.3e-29 Score=273.54 Aligned_cols=177 Identities=20% Similarity=0.311 Sum_probs=141.6
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeecc-CccccCCCccEEEEEcCchHHH
Q 002791 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~-~~~dl~~~~DlVIvLGGDGT~L 769 (881)
+|+||.|+.+ ++.+.+.++.+||.+ +|+++++++..++.+.....+. ...... +..++.+.+|+||+||||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dlvi~lGGDGT~L 78 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFH--PSYDTFSDNEELDGSADMVISIGGDGTFL 78 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccc--cccccccchhhcccCCCEEEEECCcHHHH
Confidence 6999999886 688999999999987 6999999876554332100000 000000 1133445789999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEE
Q 002791 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (881)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVV 849 (881)
+|+|.+...++||||||+|+|||||+++++++++.|+++++|+| .+++|+||++++ +++... ...+||||||
T Consensus 79 ~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~-----~i~~r~~L~~~~--~~~~~~-~~~~alNdvv 150 (292)
T PRK01911 79 RTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDY-----TIEERSLLQLES--NPKLFG-ELNFALNEIA 150 (292)
T ss_pred HHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCc-----eEEEEeeEEEEE--cCCcce-eeeEEEEEEE
Confidence 99999998999999999999999999999999999999999995 589999999996 333211 1357999999
Q ss_pred EccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 850 VDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 850 I~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
|.|+..++|+.++++|||+++++|++||||
T Consensus 151 i~r~~~~~~i~~~v~idg~~~~~~~~DGlI 180 (292)
T PRK01911 151 ILKRDTSSMITVHTYLNGEYLNSYWADGLI 180 (292)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEeeceeE
Confidence 999999999999999999999999655554
No 10
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=99.96 E-value=3.3e-29 Score=270.40 Aligned_cols=180 Identities=24% Similarity=0.378 Sum_probs=148.0
Q ss_pred cccCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcC
Q 002791 686 WKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (881)
Q Consensus 686 W~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGG 764 (881)
|+..+++|+|+.|.++ ++.+.+.++++||++ +|++++++......+.. ..+. ..+..++.+.+|+||++||
T Consensus 1 ~~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~-~~~~------~~~~~~~~~~~d~vi~~GG 72 (291)
T PRK02155 1 MKSQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGL-TGYP------ALTPEEIGARADLAVVLGG 72 (291)
T ss_pred CCCcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-cccc------ccChhHhccCCCEEEEECC
Confidence 3556789999999886 788999999999987 69999998765432210 0000 0112334457899999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCccee
Q 002791 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDV 844 (881)
Q Consensus 765 DGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~A 844 (881)
|||||+|+|.+...++|+||||+|+||||++++++++++.|+++++|+| .+++|++|+|++.++++.+. .++|
T Consensus 73 DGt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~A 145 (291)
T PRK02155 73 DGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNY-----EEEERMLLEARVVRDGEPIF--HALA 145 (291)
T ss_pred cHHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEEEECCeEEE--eeee
Confidence 9999999999988999999999999999999999999999999999995 58999999999887776542 3579
Q ss_pred EeEEEEccCCCCceEEEEEEECCeEEEEEecCe-eee
Q 002791 845 LNEVVVDRGSNPYLSKIECYEHDRLITKFGSSL-LGA 880 (881)
Q Consensus 845 LNEVVI~Rg~~~~li~ieVyIDG~~lt~~~ddg-I~a 880 (881)
|||++|.|+..++|+.++|+|||+++.+|++|| |||
T Consensus 146 lNev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVs 182 (291)
T PRK02155 146 FNDVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVA 182 (291)
T ss_pred eeheeeccCCCCceEEEEEEECCEEEEEEecCeEEEE
Confidence 999999999999999999999999999996554 544
No 11
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.96 E-value=5.8e-29 Score=289.79 Aligned_cols=180 Identities=22% Similarity=0.371 Sum_probs=150.5
Q ss_pred cccccCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhc-CCCCccceeeeccCccccCCCccEEEE
Q 002791 684 LMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFGFVQTFYLQDTSDLHERVDFVAC 761 (881)
Q Consensus 684 L~W~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~-~p~~~~v~~f~~~~~~dl~~~~DlVIv 761 (881)
-.|..+|++|+||.|+.+ ++.+.+.++++||.+ +|++|++++.....+.. .+.. . ....+ ..++|+||+
T Consensus 284 ~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~~~~~-----~--~~~~~-~~~~dlvi~ 354 (569)
T PRK14076 284 NKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNRLNEE-----C--NLIDD-IEEISHIIS 354 (569)
T ss_pred hhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhccccccc-----c--ccccc-ccCCCEEEE
Confidence 369999999999999886 688999999999987 69999998765543321 0000 0 00011 236899999
Q ss_pred EcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCc
Q 002791 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 841 (881)
Q Consensus 762 LGGDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~ 841 (881)
||||||||+|+|.+...++||||||+|+|||||+++++++++.|+++++|+| .+++|++|+|++.++++... .
T Consensus 355 lGGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~ 427 (569)
T PRK14076 355 IGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEY-----EIEKRTKLSGFILKDGHQNI--L 427 (569)
T ss_pred ECCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEEEECCccee--e
Confidence 9999999999999999999999999999999999999999999999999995 68999999999987765432 3
Q ss_pred ceeEeEEEEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 842 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 842 ~~ALNEVVI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
.+||||++|.|+..++|+.++|||||+++++|++||||
T Consensus 428 ~~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGli 465 (569)
T PRK14076 428 PSALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGII 465 (569)
T ss_pred eEEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEE
Confidence 68999999999999999999999999999999755554
No 12
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.96 E-value=3.1e-28 Score=263.28 Aligned_cols=175 Identities=25% Similarity=0.393 Sum_probs=145.0
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~ 768 (881)
.++|+||.|+++ .+.+.++++.+||.+ +|+++++++...+.+... ... . ....++...+|+||++||||||
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~-~~~----~--~~~~~~~~~~d~vi~~GGDGt~ 75 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGH-GLQ----T--VSRKLLGEVCDLVIVVGGDGSL 75 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-ccc----c--cchhhcccCCCEEEEEeCcHHH
Confidence 568999999887 688899999999987 699999987654332110 000 0 0112344568999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEE
Q 002791 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (881)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEV 848 (881)
|++++.+...++||+|||+|+||||+++++++++++|+++++|+| .+++|+||+|++.++|+... ..+||||+
T Consensus 76 l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~ALNev 148 (295)
T PRK01231 76 LGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHY-----QEEERFLLEAEVRRGGEVIG--QGDALNDV 148 (295)
T ss_pred HHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCc-----eEEEEEEEEEEEEECCcEEe--eeeEEEEE
Confidence 999999988999999999999999999999999999999999995 68999999999987766542 35799999
Q ss_pred EEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 849 VVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 849 VI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
+|.++..++|+.++|+|||+++++|++||||
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGli 179 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLI 179 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEE
Confidence 9999999999999999999999999655554
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.95 E-value=1.4e-27 Score=255.43 Aligned_cols=160 Identities=24% Similarity=0.441 Sum_probs=133.5
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
+|+|+.|+.+ ++.+.+.++++|| + .|++++++.+.++.+. ... .+..+. ++|+||+||||||||+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~-~~~---------~~~~~~--~~D~vi~lGGDGT~L~ 67 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALG-MDG---------LDIEEI--NADVIITIGGDGTILR 67 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcC-ccc---------Cccccc--CCCEEEEEcCcHHHHH
Confidence 5999999886 6889999999999 4 5999998876544331 000 011222 6899999999999999
Q ss_pred HHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEEE
Q 002791 771 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (881)
Q Consensus 771 Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVVI 850 (881)
|+|.+. +||+|||+|+||||++++++++++.|+++++|+| .+++|++|++.+ +|+.. .+||||++|
T Consensus 68 a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~-----~i~~r~~L~~~v--~g~~~----~~aLNdvvv 133 (271)
T PRK01185 68 TLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGEY-----FIDERMKLKVYI--NGERL----EDCTNEAVI 133 (271)
T ss_pred HHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCCc-----EEEEeeEEEEEE--CCcEe----EEEEEEEEE
Confidence 999875 5999999999999999999999999999999995 689999999997 55432 479999999
Q ss_pred ccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 851 DRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 851 ~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
.|+..++|+.+++||||+++.+|++||||
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlI 162 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVI 162 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEE
Confidence 99999999999999999999999655544
No 14
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.95 E-value=1.2e-27 Score=256.12 Aligned_cols=158 Identities=25% Similarity=0.392 Sum_probs=130.6
Q ss_pred HHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEe
Q 002791 707 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (881)
Q Consensus 707 a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN 786 (881)
++++.+||.+ +|++++++++.+..++ .+.. ...+..++.+.+|+||+||||||||+|+|.+...++||+|||
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLN-LPEN------HLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcC-cccc------ccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 5788999987 6999999876554332 1100 000113444578999999999999999999998999999999
Q ss_pred CCCcccccCCCcccHHHHHHHHHc-CCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEEEccCCCCceEEEEEEE
Q 002791 787 LGSLGFLTSHPFEDYRQDLRQVIY-GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYE 865 (881)
Q Consensus 787 ~G~LGFLt~~~~edl~~~L~~Il~-G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVVI~Rg~~~~li~ieVyI 865 (881)
+|+||||++++++++.+.|+++++ |+| .+++|++|+|++.++|+.+. ..+||||++|.|+..++|+.++|+|
T Consensus 74 ~G~lGFL~~~~~~~~~~~l~~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 74 RGNLGFLTDIDPKNAYEQLEACLERGEF-----FVEERFLLEAKIERNGKIIA--TSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred CCCCcccccCCHHHHHHHHHHHHhcCCc-----eEEEeeeEEEEEEECCeEee--eeEEEEEEEEecCCCCceEEEEEEE
Confidence 999999999999999999999999 985 68999999999887776542 3589999999999999999999999
Q ss_pred CCeEEEEEecCeee
Q 002791 866 HDRLITKFGSSLLG 879 (881)
Q Consensus 866 DG~~lt~~~ddgI~ 879 (881)
||+++++|++||||
T Consensus 147 ~~~~~~~~~~DGlI 160 (272)
T PRK02231 147 DDKFAFSQRSDGLI 160 (272)
T ss_pred CCEEEEEEecCeEE
Confidence 99999999655544
No 15
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.95 E-value=2.1e-27 Score=253.36 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=128.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHH
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~A 771 (881)
+|+|+.+.++++.+.+.++.+||.+ +|+++ + .+++|+||+||||||||+|
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~-~g~~~--~---------------------------~~~~Dlvi~iGGDGT~L~a 51 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKD-FGFIL--D---------------------------EKNPDIVISVGGDGTLLSA 51 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCcc--C---------------------------CcCCCEEEEECCcHHHHHH
Confidence 5899999656899999999999976 57762 1 0257999999999999999
Q ss_pred HHhcCC--CCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEE
Q 002791 772 SNLFRG--AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (881)
Q Consensus 772 ar~~~~--~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVV 849 (881)
+|.+.+ .++||+|||+|+||||++++++++++.|+++++|+| .+++|++|++++.++++.. ...+||||++
T Consensus 52 ~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y-----~i~~r~~L~~~v~~~~~~~--~~~~alNev~ 124 (265)
T PRK04885 52 FHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPG-----QVVSYPLLEVKITYEDGEK--EKYLALNEAT 124 (265)
T ss_pred HHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCc-----eEEEEeeEEEEEEeCCCcE--eeeeeeeeee
Confidence 999987 799999999999999999999999999999999995 5899999999987655432 1257999999
Q ss_pred EccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 850 VDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 850 I~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
|.|+. +++.++++|||+++++|++||||
T Consensus 125 i~~~~--~~~~~~v~id~~~~~~~~gDGlI 152 (265)
T PRK04885 125 IKRIE--GTLVADVYINGVLFERFRGDGLC 152 (265)
T ss_pred eccCC--ceEEEEEEECCEEEEEEEcCEEE
Confidence 99875 79999999999999999655554
No 16
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.95 E-value=7.9e-27 Score=248.84 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=129.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
++|+|+.++.+++.+.++++.+||.+ +|++++++ . .++|+||+||||||||+
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~-~g~~~~~~--------------------------~-~~~D~vi~lGGDGT~L~ 54 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEE-YGFTVVDH--------------------------P-KNANIIVSIGGDGTFLQ 54 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEcC--------------------------C-CCccEEEEECCcHHHHH
Confidence 37999999888888999999999987 68877531 0 34799999999999999
Q ss_pred HHHhcCCC-CCcEEEEeC-CCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEE
Q 002791 771 ASNLFRGA-VPPVISFNL-GSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (881)
Q Consensus 771 Aar~~~~~-~~PVLGIN~-G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEV 848 (881)
|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+| .+++|++|++++ +++. ..+||||+
T Consensus 55 a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~v--~~~~----~~~alNev 123 (264)
T PRK03501 55 AVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEEI-----EVRKYPTIEVTV--DGST----SFYCLNEF 123 (264)
T ss_pred HHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCCc-----EEEEeeeEEEEE--CCcc----ceEEEEEE
Confidence 99998765 899999999 99999999999999999999999995 689999999997 4432 25799999
Q ss_pred EEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 849 VVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 849 VI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
+| ++..++|+.++|+|||+++++|++||||
T Consensus 124 vi-~~~~~~~~~~~v~id~~~~~~~~~DGlI 153 (264)
T PRK03501 124 SI-RSSIIKTFVIDVYIDDLHFETFRGDGMV 153 (264)
T ss_pred EE-cCCCCceEEEEEEECCEEeEEEecCEEE
Confidence 99 7778899999999999999999655554
No 17
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.94 E-value=3.4e-26 Score=245.52 Aligned_cols=166 Identities=27% Similarity=0.404 Sum_probs=136.2
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH
Q 002791 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (881)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~L 769 (881)
||+||.|+++ ++.+.+.++.+||.+ +|+++.+++...+....... .....+ ..++|+||++|||||+|
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~d~vi~iGGDGTlL 71 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSE---------EDVLPLEEMDVDFIIAIGGDGTIL 71 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccc---------cccccccccCCCEEEEEeCcHHHH
Confidence 6999999886 688999999999987 69999987543322110000 000111 23689999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEE
Q 002791 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (881)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVV 849 (881)
+++| +...++||+|||+|++|||++++++++.+.|+++++|+| .+++|++|++.+ +|+. .++||||++
T Consensus 72 ~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~~--~~~~----~~~alNdv~ 139 (277)
T PRK03708 72 RIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDY-----FIDERIKLRVYI--NGEN----VPDALNEVV 139 (277)
T ss_pred HHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEE--CCeE----eEEEeeeEE
Confidence 9999 677899999999999999999999999999999999995 689999999987 4543 257999999
Q ss_pred EccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 850 VDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 850 I~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
|.++..++|+.++|+|||+++.+|++||||
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvI 169 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLI 169 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEE
Confidence 999999999999999999999999655554
No 18
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=99.94 E-value=6e-26 Score=243.99 Aligned_cols=169 Identities=28% Similarity=0.462 Sum_probs=144.1
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
++|+|+.+++. ++...++++..|+.. .+..+.++++..+.+... . .+ .+...+.+|+|+++|||||+|
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~--~----~~----~~~~~~~~d~ivvlGGDGtlL 69 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKDF--A----DY----VDDDEEKADLIVVLGGDGTLL 69 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhcccc--c----cc----ccccccCceEEEEeCCcHHHH
Confidence 47899999997 688999999999986 689999888877665321 0 00 011236799999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEE
Q 002791 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (881)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVV 849 (881)
++++++...++||+|||+|+|||||+++++++++.++++++|+| .+++|++|++.+.+.+ . ..++||||++
T Consensus 70 ~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~~-----~~~~r~~l~~~v~~~~--~--~~~~aLNEv~ 140 (281)
T COG0061 70 RAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGEY-----RIEERLLLEVSVNRGD--I--RRALALNEVV 140 (281)
T ss_pred HHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCce-----EEEEeEEEEEEEEeCC--c--cccceeeEEE
Confidence 99999999999999999999999999999999999999999874 6899999999997655 2 3578999999
Q ss_pred EccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 850 VDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 850 I~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
|+|+..++|+.+++||||++++++++||||
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGli 170 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLI 170 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEE
Confidence 999999999999999999999999755554
No 19
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=99.94 E-value=2.4e-26 Score=246.93 Aligned_cols=181 Identities=27% Similarity=0.423 Sum_probs=145.5
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCC--Cccce---------eeeccCccccCCCccEE
Q 002791 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPG--FGFVQ---------TFYLQDTSDLHERVDFV 759 (881)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~--~~~v~---------~f~~~~~~dl~~~~DlV 759 (881)
||+||.|+.+ ++.+.+.++++||.++.++.++++..+.+.+..... ..... ...........+++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 6999999996 799999999999988438999998877654321100 00000 00111122236789999
Q ss_pred EEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCe--ec
Q 002791 760 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGK--AM 837 (881)
Q Consensus 760 IvLGGDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk--~~ 837 (881)
|+||||||+|+++|.+.+.++||+|||+|++|||++++++++.+.++++++|+| .+++|++|++.+.+.+. ..
T Consensus 81 i~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~-----~~~~r~~l~~~~~~~~~~~~~ 155 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEY-----SIEERMRLEVSVDRKKGAEIA 155 (285)
T ss_dssp EEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHC-----EEEEEEEEEEEEEETTE-CEE
T ss_pred EEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCe-----EEEEeeeEEEEEecCCcccee
Confidence 999999999999999999999999999999999999999999999999999985 68999999999987665 22
Q ss_pred CCCcceeEeEEEEccCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 838 PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 838 ~~~~~~ALNEVVI~Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
....||||++|.++..++++.+++++||++++++++|||+
T Consensus 156 --~~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGli 195 (285)
T PF01513_consen 156 --LIDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLI 195 (285)
T ss_dssp --EEEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEE
T ss_pred --eeeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeE
Confidence 2468999999999999999999999999999999766654
No 20
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.93 E-value=2.7e-25 Score=236.17 Aligned_cols=149 Identities=23% Similarity=0.227 Sum_probs=126.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHH
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~A 771 (881)
+++|++|+. +.+.+.++.++|.+ .|+.+..+++.. ....++|+||+||||||||+|
T Consensus 2 ~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~---------------------~~~~~~d~vi~iGGDGT~L~a 57 (256)
T PRK14075 2 KLGIFYREE--KEKEAKFLKEKISK-EHEVVEFCEASA---------------------SGKVTADLIIVVGGDGTVLKA 57 (256)
T ss_pred EEEEEeCcc--HHHHHHHHHHHHHH-cCCeeEeecccc---------------------cccCCCCEEEEECCcHHHHHH
Confidence 678886664 67888999999987 688877654311 123468999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEEEc
Q 002791 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVD 851 (881)
Q Consensus 772 ar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVVI~ 851 (881)
+|.+ ++||+|||+|+||||++++++++++.|+++++|+| .+++|++|++++. ++ .++||||++|.
T Consensus 58 ~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~~-----~~~~r~~l~~~~~-~~------~~~alNev~i~ 122 (256)
T PRK14075 58 AKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWNF-----REEKRWFLKIESE-LG------NHLALNDVTLE 122 (256)
T ss_pred HHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCCc-----EEEEeeEEEEEEc-CC------cEEEEEEEEEe
Confidence 9998 89999999999999999999999999999999995 6899999999873 22 25799999999
Q ss_pred cCCCCceEEEEEEECCeEEEEEecCeee
Q 002791 852 RGSNPYLSKIECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 852 Rg~~~~li~ieVyIDG~~lt~~~ddgI~ 879 (881)
++..++++.++|++||+.+.+|++||||
T Consensus 123 ~~~~~~~~~~~v~i~~~~~~~~~~DG~i 150 (256)
T PRK14075 123 RDPSQKMVEIEVSFEDHSSMWFFADGVV 150 (256)
T ss_pred cCCCCcEEEEEEEECCEEEEEEecCEEE
Confidence 9999999999999999999999655544
No 21
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.93 E-value=2.7e-25 Score=241.53 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=136.4
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~ 768 (881)
.++|+||.|+++ .+.+.+.++.+||.+ .|++++++....+..+ ... + .......+|+||++||||||
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~-~~~------~----~~~~~~~~d~vi~~GGDGT~ 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNP-YPV------F----LASASELIDLAIVLGGDGTV 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhcc-ccc------h----hhccccCcCEEEEECCcHHH
Confidence 568999999886 678889999999976 6999988765433211 000 0 12233468999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeC-CCcccccCCC--cccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCee---cCCCcc
Q 002791 769 LHASNLFRGAVPPVISFNL-GSLGFLTSHP--FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKA---MPGKVF 842 (881)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~-G~LGFLt~~~--~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~---~~~~~~ 842 (881)
|++++.+...++||+|||+ |+||||+++. .++ ++.|+++++|+| .+++|++|+|++.+.|+. .....+
T Consensus 71 l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~-----~i~~r~~L~~~~~~~~~~~~~~~~~~~ 144 (305)
T PRK02645 71 LAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRY-----AIERRMMLQARVFEGDRSNEEPVSESY 144 (305)
T ss_pred HHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCc-----eEEEeeEEEEEEEeCCcccccccccce
Confidence 9999999889999999999 8999999985 445 899999999995 689999999999766531 001236
Q ss_pred eeEeEEEEccCCCCceEE--EEEEECCeEEEEEecCeee
Q 002791 843 DVLNEVVVDRGSNPYLSK--IECYEHDRLITKFGSSLLG 879 (881)
Q Consensus 843 ~ALNEVVI~Rg~~~~li~--ieVyIDG~~lt~~~ddgI~ 879 (881)
+||||++|.++...+++. ++|+|||+++++|++||||
T Consensus 145 ~AlNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlI 183 (305)
T PRK02645 145 YALNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLI 183 (305)
T ss_pred EEEeeEEEeccCcccccceEEEEEECCEEEEEEecCEEE
Confidence 899999999998788764 9999999999999655554
No 22
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.92 E-value=6.2e-24 Score=226.00 Aligned_cols=140 Identities=22% Similarity=0.260 Sum_probs=117.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHH
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~A 771 (881)
++.|+.++.+++.+.+.+|.+++.. .++ ..+++|+||+||||||||+|
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~-~~~-------------------------------~~~~~D~vi~iGGDGT~L~a 49 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKK-KLA-------------------------------VEDGADYLFVLGGDGFFVST 49 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhh-CCC-------------------------------ccCCCCEEEEECCcHHHHHH
Confidence 6899999999999999989888854 221 01348999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCcccccCCCcccHHH-HHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcceeEeEEEE
Q 002791 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ-DLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (881)
Q Consensus 772 ar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~-~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVVI 850 (881)
+|.+...++||+|||+|+||||++++++++++ .++++.+ | .+++|++|++.+ +++ ..+||||++|
T Consensus 50 ~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~-----~~~~r~~L~~~~--~~~-----~~~AlNE~vi 115 (259)
T PRK00561 50 AANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--L-----KFTQIDLLEVQI--DDQ-----IHLVLNELAV 115 (259)
T ss_pred HHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--C-----CeEEEEEEEEEE--CCC-----eeEEEEEEEE
Confidence 99999999999999999999999999999999 7777765 3 368999999987 343 2579999999
Q ss_pred ccCCCCceEEEEEEECCeEEEEEecCe-eee
Q 002791 851 DRGSNPYLSKIECYEHDRLITKFGSSL-LGA 880 (881)
Q Consensus 851 ~Rg~~~~li~ieVyIDG~~lt~~~ddg-I~a 880 (881)
.++. ++.++|+|||+++++|++|| |||
T Consensus 116 ~~~~---~~~~~v~idg~~~~~~~gDGlIVs 143 (259)
T PRK00561 116 YTNT---AYPINIFIDNEFWEKYRGSGLLIG 143 (259)
T ss_pred ccCC---ceEEEEEECCEEEEEEecCEEEEe
Confidence 9865 68999999999999996555 544
No 23
>PLN02929 NADH kinase
Probab=99.91 E-value=2.3e-23 Score=225.34 Aligned_cols=149 Identities=23% Similarity=0.306 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCC
Q 002791 701 PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVP 780 (881)
Q Consensus 701 ~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~ 780 (881)
+.....+..+.++|.+ +|+++...... +..+...++|+||+||||||||+|+|.+ ..++
T Consensus 30 ~~h~~~~~~~~~~L~~-~gi~~~~v~r~-------------------~~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~i 88 (301)
T PLN02929 30 KVHKDTVNFCKDILQQ-KSVDWECVLRN-------------------ELSQPIRDVDLVVAVGGDGTLLQASHFL-DDSI 88 (301)
T ss_pred hhhHHHHHHHHHHHHH-cCCEEEEeecc-------------------ccccccCCCCEEEEECCcHHHHHHHHHc-CCCC
Confidence 3456677889999987 69887432110 0012235689999999999999999999 7899
Q ss_pred cEEEEeCC------------------CcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEeCCeecCCCcc
Q 002791 781 PVISFNLG------------------SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVF 842 (881)
Q Consensus 781 PVLGIN~G------------------~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r~Gk~~~~~~~ 842 (881)
||||||+| ++||||+++++++++.|+++++|+| .+++|+||++++ +|+... .
T Consensus 89 PvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~-----~~~~r~~L~~~v--~g~~~~---~ 158 (301)
T PLN02929 89 PVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRL-----KPTELSRISTVV--NGTLLE---T 158 (301)
T ss_pred cEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEe--cCCccc---c
Confidence 99999999 7999999999999999999999995 589999999998 455432 3
Q ss_pred eeEeEEEEccCCCCceEEEEEEEC-----CeEEEEEec-Ceeee
Q 002791 843 DVLNEVVVDRGSNPYLSKIECYEH-----DRLITKFGS-SLLGA 880 (881)
Q Consensus 843 ~ALNEVVI~Rg~~~~li~ieVyID-----G~~lt~~~d-dgI~a 880 (881)
+||||++|.++..++|+.++++|| |.++..+++ |+|||
T Consensus 159 ~ALNEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVs 202 (301)
T PLN02929 159 PALNDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVS 202 (301)
T ss_pred eEeeEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEe
Confidence 899999999999999999999999 889999965 45544
No 24
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.87 E-value=2.9e-22 Score=198.56 Aligned_cols=114 Identities=25% Similarity=0.327 Sum_probs=75.4
Q ss_pred ccEEEcCC---CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCC------------
Q 002791 267 VTFCRGGQ---VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT------------ 331 (881)
Q Consensus 267 ~~LyRSgq---pT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps------------ 331 (881)
..|||||. +|++|++.|+++||+||||||++. |....| .....|++++|+|+.......
T Consensus 19 g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~-E~~~~p-----~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 92 (164)
T PF13350_consen 19 GRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPT-ERERAP-----DPLIDGVQYVHIPIFGDDASSPDKLAELLQSSA 92 (164)
T ss_dssp TSEEEES--TT--HHHHHHHHHTT--EEEE-S-HH-HHHHHS---------TT-EEEE--SS-S-TTH----------HH
T ss_pred CcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcc-ccccCC-----CCCcCCceeeeeccccccccccccccccccccc
Confidence 48999995 579999999999999999999986 222112 123459999999997544331
Q ss_pred -----------------HHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhhhcc
Q 002791 332 -----------------MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSN 387 (881)
Q Consensus 332 -----------------~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIiaDYL~s~ 387 (881)
.+.+.++++.+.+.. +|+||||++||||||+++++++.++||+.++|++||++||
T Consensus 93 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~DY~lSn 164 (164)
T PF13350_consen 93 DAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIADYLLSN 164 (164)
T ss_dssp HHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHHHHHGGG
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 133456677775555 7999999999999999999999999999999999999987
No 25
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=99.86 E-value=2.3e-21 Score=205.08 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=93.1
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccC-CCcccHHHHHHHHHcCCCCCCcceeEEeeEEEEEEEe
Q 002791 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFR 832 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~-~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~v~v~r 832 (881)
+++|+||+||||||||+|+|.+...++||+|||+|+||||++ ++++++.+.|+++..+. ++.|++ ++.. .
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~-------~~~l~~-~~~~-~ 94 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTV-------LHPLRM-TATD-V 94 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCc-------EEEEEE-EEEE-C
Confidence 358999999999999999999998999999999999999996 89999999999988664 344444 4432 2
Q ss_pred CCeecCCCcceeEeEEEEccCCCCceEEEEEEECCeE-EEEEe-cCeeee
Q 002791 833 NGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL-ITKFG-SSLLGA 880 (881)
Q Consensus 833 ~Gk~~~~~~~~ALNEVVI~Rg~~~~li~ieVyIDG~~-lt~~~-ddgI~a 880 (881)
+|+.. ..+||||++|.|+. ++++.++|+|||++ +.+|+ ||+|||
T Consensus 95 ~~~~~---~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVS 140 (246)
T PRK04761 95 SGEVH---EALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVA 140 (246)
T ss_pred CCcEe---eeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEe
Confidence 34321 35799999999987 78999999999997 88985 555554
No 26
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.84 E-value=1.4e-20 Score=188.26 Aligned_cols=122 Identities=23% Similarity=0.272 Sum_probs=88.2
Q ss_pred CCCceeEEecCCccccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeec
Q 002791 245 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 324 (881)
Q Consensus 245 i~Nw~~V~ls~~~~~~~~~~~e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV 324 (881)
..||+.|. +.+||||+|++.++++|+++|+||||+||++. .. .....+++..||+++|+|+
T Consensus 4 P~nF~~V~--------------~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~--~~---~~~~~f~~~~~I~l~~~~~ 64 (164)
T PF03162_consen 4 PLNFGMVE--------------PGVYRSAQPTPANFPFLERLGLKTIINLRPEP--PS---QDFLEFAEENGIKLIHIPM 64 (164)
T ss_dssp -TT-EEEE--------------TTEEEESS--HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE---
T ss_pred CccccCCC--------------CCccCCCCCChhhHHHHHHCCCceEEEecCCC--CC---HHHHHHHhhcCceEEEecc
Confidence 46899886 48999999999999999999999999999875 11 1344478999999999999
Q ss_pred CCCCC----CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhhh
Q 002791 325 EVRTA----PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 385 (881)
Q Consensus 325 ~d~~~----ps~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIiaDYL~ 385 (881)
..... ++.+.+.++++++.+..++||||||..|+||||++++|+|.++||+...|+++|-.
T Consensus 65 ~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 65 SSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRR 129 (164)
T ss_dssp ----GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH
T ss_pred ccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 86544 57888988988877888999999999999999999999999999999999999985
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.82 E-value=1.4e-19 Score=175.34 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=96.6
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHh
Q 002791 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (881)
Q Consensus 266 e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~--~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~ 343 (881)
+..+|||+|++++|++.|+++|||||||||++. |....+ ..+.+.++..|++|+|+|+.. ..++++++.+|.+++.
T Consensus 6 ~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~-E~~~~p~~~~~~~~a~~~gl~y~~iPv~~-~~~~~~~v~~f~~~~~ 83 (135)
T TIGR01244 6 TEHLYVSPQLTKADAAQAAQLGFKTVINNRPDR-EEESQPDFAQIKAAAEAAGVTYHHQPVTA-GDITPDDVETFRAAIG 83 (135)
T ss_pred CCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHCCCeEEEeecCC-CCCCHHHHHHHHHHHH
Confidence 357999999999999999999999999999985 322222 123345677899999999995 4578999999999995
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHh
Q 002791 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQT 383 (881)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIiaDY 383 (881)
..++|||+||++|+ |||+++++++...|++.++|+++-
T Consensus 84 -~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~ 121 (135)
T TIGR01244 84 -AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRA 121 (135)
T ss_pred -hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56799999999999 999999999888999999998865
No 28
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.74 E-value=9e-18 Score=158.22 Aligned_cols=101 Identities=28% Similarity=0.379 Sum_probs=73.6
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcc--hhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHh
Q 002791 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNF--YEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (881)
Q Consensus 266 e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~--~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~ 343 (881)
+..||.||||++++++.|+++|||||||||++. |++. ....+.+.++..|++|+|+||. ...++.+++++|.++++
T Consensus 6 ~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-E~~~qp~~~~~~~~a~~~Gl~y~~iPv~-~~~~~~~~v~~f~~~l~ 83 (110)
T PF04273_consen 6 SDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-EEPGQPSSAEEAAAAEALGLQYVHIPVD-GGAITEEDVEAFADALE 83 (110)
T ss_dssp ETTEEEECS--HHHHHHHHHCT--EEEE-S-TT-STTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHH
T ss_pred CCCeEECCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHcCCeEEEeecC-CCCCCHHHHHHHHHHHH
Confidence 358999999999999999999999999999986 3322 2234667899999999999999 46789999999999994
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002791 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (881)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGaLaaLlr~ 370 (881)
..++|||+||++|. |.+++|+|...
T Consensus 84 -~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 -SLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp -TTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred -hCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 56899999999999 99999999864
No 29
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=2e-15 Score=142.91 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=98.9
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCc--ccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhc
Q 002791 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAER--VKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (881)
Q Consensus 267 ~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee--~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d 344 (881)
..++.|||++++|+..++.+|||+|||.|++. +.+|.. +.+..+++..|+.|.|+||. ...+++++++.|.+.+ +
T Consensus 8 d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~-~~i~~aa~~aGl~y~~iPV~-~~~iT~~dV~~f~~Al-~ 84 (130)
T COG3453 8 DRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGF-AAIAAAAEAAGLTYTHIPVT-GGGITEADVEAFQRAL-D 84 (130)
T ss_pred cceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCCh-HHHHHHHHhcCCceEEeecC-CCCCCHHHHHHHHHHH-H
Confidence 47889999999999999999999999999996 223333 46778899999999999999 5678999999999999 5
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHH
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIia 381 (881)
...+|||.||++|. |+-++|.+-+...|++.+++.+
T Consensus 85 eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 85 EAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 78899999999999 9999999998778999999976
No 30
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.49 E-value=3.1e-13 Score=129.31 Aligned_cols=116 Identities=9% Similarity=0.141 Sum_probs=87.0
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCC-CCCCHHHHHHHHHHHh--
Q 002791 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVS-- 343 (881)
Q Consensus 267 ~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~-~~ps~E~v~af~~il~-- 343 (881)
+.||+|++++..++++|+++||++||||+.+. .. + ...|++|+|+|+.|. ..+..+.+.+..+++.
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~--~~-~--------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEV--PN-L--------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCC--CC-C--------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998864 11 1 246899999999974 3334455554444443
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHH-cCCCHHHHHHHhhhcccccccc
Q 002791 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTITSNDVLLKD 393 (881)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGaLaaLlr~l-~Gvs~ddIiaDYL~s~~~l~~~ 393 (881)
...++||||||.+|.+|||+++++|+.. .|++.++|++..-...+....+
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~ 125 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPN 125 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCC
Confidence 2567899999999999999888777544 7999999998655444433333
No 31
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.49 E-value=1.6e-13 Score=143.14 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=106.2
Q ss_pred CCCceeEEecCCccccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeec
Q 002791 245 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 324 (881)
Q Consensus 245 i~Nw~~V~ls~~~~~~~~~~~e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV 324 (881)
.-||+.|. ..|||||.|.+..+.+|+.+++|+||.|+++. |+.....+++..+|+++|+.|
T Consensus 57 PlnFs~V~--------------~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-----yp~~nl~f~~~~~Ik~~~i~i 117 (249)
T KOG1572|consen 57 PLNFSMVD--------------NGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-----YPEENLNFLESNGIKLYQIGI 117 (249)
T ss_pred Cccccccc--------------cceeecCCCCccchHHHHHhhhheEEEecCCC-----CChHHHHHHHhcCceEEEEec
Confidence 45888876 38999999999999999999999999999874 443445589999999999999
Q ss_pred CCCC----CC----CHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhhhccc
Q 002791 325 EVRT----AP----TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSND 388 (881)
Q Consensus 325 ~d~~----~p----s~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIiaDYL~s~~ 388 (881)
.... .| ..+.+...++++.+..++|+|+||+.||.|||++++|+|++++|+..-|+++|+.-..
T Consensus 118 e~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~ 189 (249)
T KOG1572|consen 118 EGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAG 189 (249)
T ss_pred ccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhcc
Confidence 8654 23 2456677777777889999999999999999999999999999999999999995444
No 32
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.46 E-value=5.2e-14 Score=149.65 Aligned_cols=165 Identities=15% Similarity=0.088 Sum_probs=116.0
Q ss_pred ccEEEcCCCCHhhHH--HHHHcCCcEEEEcCCCc-ccCcchhhhhHH-HHhhCCcEEEEeecCCCCCCCHHHHHHHHHHH
Q 002791 267 VTFCRGGQVTEEGLK--WLMEKGYKTIVDIRAER-VKDNFYEAAIDD-AILSGKVELIKIPVEVRTAPTMEQVEKFASLV 342 (881)
Q Consensus 267 ~~LyRSgqpT~eDL~--~LkelGIKTIIDLRsee-~Ee~~~~~~e~~-~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il 342 (881)
...|||++|.+.+.. ++..++++|+|+|+.+. .....+. .+.. .....++.....+.........+.+..+++++
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~ 131 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYT-DHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLL 131 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhh-hhhhhhccccchhhhhhccCccchhhHHHHHHHHHHH
Confidence 578999999887766 77778999999999722 0111121 1111 12344555555666656667788888888888
Q ss_pred hcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhhhcccccccchHH------------HHHH----------
Q 002791 343 SNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTR------------TRKL---------- 400 (881)
Q Consensus 343 ~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIiaDYL~s~~~l~~~~~~------------~~k~---------- 400 (881)
.+..++|||+||++||||||++++|++.++|++.+++++||+.++.+....... .++.
T Consensus 132 ~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (249)
T COG2365 132 ADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLEKKLQTFSLTLAS 211 (249)
T ss_pred hhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhccccchhcccchhHHHHHh
Confidence 666679999999999999999999999999999999999999999887655432 1110
Q ss_pred --hhhhhhhhhhhccchhHHhHHhhhcccccccc
Q 002791 401 --KASAGKFLLEEKYETVKENQDEIQTKNGVFGF 432 (881)
Q Consensus 401 --~~~~~~~~l~s~~g~ie~~ld~~~~~~~~~~e 432 (881)
+-.+..+-+...+|+++.++.+..+++....+
T Consensus 212 ~~y~~~a~~~~~~~~gs~~~~l~~~~~~~~~~~~ 245 (249)
T COG2365 212 DEYLFAAFDELDEQYGSLDGYLADKFGLSADEWE 245 (249)
T ss_pred HHHHHHHHHHHHHHHccccccchhhcCcCHHHHH
Confidence 12233345666677777777766666654444
No 33
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.44 E-value=1e-12 Score=124.84 Aligned_cols=118 Identities=8% Similarity=0.175 Sum_probs=87.9
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCC-HHHHHHHHHHHh--
Q 002791 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (881)
Q Consensus 267 ~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps-~E~v~af~~il~-- 343 (881)
+.||+|+++...+++.|+++||++||||+++. +. ......|++|+|+|+.|...+. ...+..+.+++.
T Consensus 7 ~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~-~~--------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 7 PGLYLGSYPAASDKELLKKLGITHVLNVAKEV-PN--------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred CCeEECChhHhcCHHHHHHcCCCEEEEcccCC-CC--------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999876 21 1234579999999998776443 344444444443
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHH-HHcCCCHHHHHHHhhhcccccccc
Q 002791 344 NSSKKPLYLHSKEGVWRTYAMVSRWR-QYMARCASQISGQTITSNDVLLKD 393 (881)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGaLaaLlr-~l~Gvs~ddIiaDYL~s~~~l~~~ 393 (881)
...++||||||.+|.+|||++++.++ ...|++.++|++..-.-.+....+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~ 128 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPN 128 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCC
Confidence 23578999999999999997766654 347899999988665444433333
No 34
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.33 E-value=3.1e-12 Score=138.03 Aligned_cols=122 Identities=28% Similarity=0.247 Sum_probs=95.4
Q ss_pred CCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC---CCcccccC--CCcccHHHHHHHHHcCCCCCCcceeEEeeEEE
Q 002791 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL---GSLGFLTS--HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 827 (881)
Q Consensus 753 ~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~---G~LGFLt~--~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~ 827 (881)
..++|+||+.|||||||.|++.+.+..+||+|||+ |+=|.|+- ..+++...+|.++..|+|. ...|.|++
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~-----wv~r~rir 177 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFE-----WVLRQRIR 177 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHH-----HhhhheeE
Confidence 56899999999999999999999889999999998 66666664 2348899999999999974 45677777
Q ss_pred EEEEeCCee-cC---------------------------------CCcceeEeEEEEccCCCCceEEEEEEECCeEEEEE
Q 002791 828 CEIFRNGKA-MP---------------------------------GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKF 873 (881)
Q Consensus 828 v~v~r~Gk~-~~---------------------------------~~~~~ALNEVVI~Rg~~~~li~ieVyIDG~~lt~~ 873 (881)
.++.-++.. .| ...+.|||||+|...-+++++.+++.||+....+-
T Consensus 178 ~tv~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~Kq 257 (395)
T KOG4180|consen 178 GTVVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQ 257 (395)
T ss_pred EEEecCCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccc
Confidence 766521110 00 01245889999999999999999999999998876
Q ss_pred ecCeee
Q 002791 874 GSSLLG 879 (881)
Q Consensus 874 ~ddgI~ 879 (881)
.+.|++
T Consensus 258 Kssgl~ 263 (395)
T KOG4180|consen 258 KSSGLV 263 (395)
T ss_pred cCCCee
Confidence 555544
No 35
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.30 E-value=1.7e-11 Score=129.40 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=87.3
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 002791 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (881)
Q Consensus 277 ~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d--~~~~PVLVHC 354 (881)
+..++.|++.||++||.+.... |. .+.++..||+++++|+.|...|+.+++.+|+++++. ..+++|+|||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~-----Yd---~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC 177 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERT-----YN---DGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHC 177 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-----CC---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 5678999999999999997543 22 124678899999999999999999999999998752 3577999999
Q ss_pred ccCCChHHHHHHHHHHHcCCCHHHHHHHhhhcccc
Q 002791 355 KEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 389 (881)
Q Consensus 355 tAGKDRTGaLaaLlr~l~Gvs~ddIiaDYL~s~~~ 389 (881)
.+|.+|||+++++|+...|++.++|++..-...+.
T Consensus 178 ~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPg 212 (241)
T PTZ00393 178 VAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKG 212 (241)
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 99999999999999877899999999865544443
No 36
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.28 E-value=3.6e-11 Score=120.93 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=87.5
Q ss_pred cEEEcCCCCH----hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHh
Q 002791 268 TFCRGGQVTE----EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (881)
Q Consensus 268 ~LyRSgqpT~----eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~ 343 (881)
+|.-...|++ ++++.|+++||+.||++..+. +. .+..+..|++|.++|+.|...|+.+.+.+|++++.
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~---~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YD---AELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CC---HHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 4444555544 677999999999999996543 21 12466789999999999889999988888887764
Q ss_pred c------CCCCcEEEeCccCCChHHHHHHHHHHHcC-CCHHHHHHHhhhccc
Q 002791 344 N------SSKKPLYLHSKEGVWRTYAMVSRWRQYMA-RCASQISGQTITSND 388 (881)
Q Consensus 344 d------~~~~PVLVHCtAGKDRTGaLaaLlr~l~G-vs~ddIiaDYL~s~~ 388 (881)
. ..++||+|||.+|.+|||+++++++...| ++.++|++..-...+
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~ 140 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRK 140 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 2 34789999999999999999888876544 999999886654433
No 37
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.23 E-value=2.2e-11 Score=115.55 Aligned_cols=116 Identities=15% Similarity=0.289 Sum_probs=86.8
Q ss_pred EEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCC-CCCCCHHHHHHHHHHHhc--C
Q 002791 269 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-RTAPTMEQVEKFASLVSN--S 345 (881)
Q Consensus 269 LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d-~~~ps~E~v~af~~il~d--~ 345 (881)
||.|+.+... .++|+++||++|||++.+. +.+ + .....+++|+++|+.| ...+..+.+..+.+++.+ .
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~-~~~-~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~ 71 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEEC-PNP-Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS 71 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSS-STS-H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCC-cCc-h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc
Confidence 6888888888 9999999999999999875 111 1 2456789999999987 344444555555555542 4
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHH-cCCCHHHHHHHhhhcccccccc
Q 002791 346 SKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTITSNDVLLKD 393 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLaaLlr~l-~Gvs~ddIiaDYL~s~~~l~~~ 393 (881)
.+++|||||.+|.+|||++++.|+.. .|++.++|++..-...+....+
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~ 120 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPN 120 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHH
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCC
Confidence 57899999999999999888887655 7999999988554444444433
No 38
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.22 E-value=2.8e-11 Score=121.54 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=63.9
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEe
Q 002791 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLH 353 (881)
Q Consensus 277 ~eDL~~LkelGIKTIIDLRsee~Ee~~~~-~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d--~~~~PVLVH 353 (881)
+.|+++|+.+|+..||.|-+.. |-..+. ....+.++..||.|+|+||.|...|+.+...++.+.+.. ..++.|++|
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~-EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDH-ELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HH-HHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHH-HHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6789999999999999998875 222111 234567889999999999999999987655444433221 346789999
Q ss_pred CccCCChHHHHHHHHHHHcC--CCHHHHH
Q 002791 354 SKEGVWRTYAMVSRWRQYMA--RCASQIS 380 (881)
Q Consensus 354 CtAGKDRTGaLaaLlr~l~G--vs~ddIi 380 (881)
|.+|.||||+++++++..+| ++.++||
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999887666 7888775
No 39
>PRK12361 hypothetical protein; Provisional
Probab=99.18 E-value=2.5e-10 Score=133.54 Aligned_cols=121 Identities=14% Similarity=0.209 Sum_probs=96.3
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhc--
Q 002791 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-- 344 (881)
Q Consensus 267 ~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d-- 344 (881)
+.||.|+++++.|++.|++.||++||||+.+. +.... .....+++|+|+|+.|...|+.+++.+..++++.
T Consensus 100 ~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-~~~~~------~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 100 ENLYLGCRLFPADLEKLKSNKITAILDVTAEF-DGLDW------SLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred CcEEECCCCCcccHHHHHHcCCCEEEEccccc-ccccc------cccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999653 11111 1123689999999999888999888888777753
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHH--cCCCHHHHHHHhhhcccccccch
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITSNDVLLKDS 394 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l--~Gvs~ddIiaDYL~s~~~l~~~~ 394 (881)
..+++|||||.+|.+|++++++.|+.. .+++.++|++.--...+....|.
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~ 224 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNK 224 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCH
Confidence 356899999999999999888888765 37999999987665555555553
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=98.76 E-value=2.6e-08 Score=103.16 Aligned_cols=94 Identities=17% Similarity=0.319 Sum_probs=77.9
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCC
Q 002791 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGV 358 (881)
Q Consensus 280 L~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~-~~~PVLVHCtAGK 358 (881)
+..++...+++|+-|...- |+ .+.....||..+++|+.|...|+++.+.+|+++++.. ..+.|.|||++|-
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----yd---~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGl 158 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----YD---AKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGL 158 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----CC---hHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCC
Confidence 4556677999999996543 32 2245678999999999999999999999999998532 2589999999999
Q ss_pred ChHHHHHHHHHHH-cCCCHHHHHH
Q 002791 359 WRTYAMVSRWRQY-MARCASQISG 381 (881)
Q Consensus 359 DRTGaLaaLlr~l-~Gvs~ddIia 381 (881)
+|||+|+|+|+.+ .|++..|+|+
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~ 182 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIA 182 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999877 6899999977
No 41
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=98.56 E-value=1.6e-07 Score=101.27 Aligned_cols=109 Identities=26% Similarity=0.244 Sum_probs=78.9
Q ss_pred cEEEEEecC--Ch-hHHHHHHHHHHHHhcCCCeEEEEccchhh-hhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002791 691 RTVLVLKKP--GP-ALMEEAKEVASFLYHQEKMNILVEPDVHD-IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (881)
Q Consensus 691 kkVlIV~K~--~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~-~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDG 766 (881)
++++||.++ +. ...+.+.++.++|.+ +++++.+...... .... .........+|+||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~------------~~~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAAR------------YVEEARKFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHH------------HHHHHHhcCCCEEEEECCCC
Confidence 689999999 44 456778889999876 6877654322111 0000 00011234589999999999
Q ss_pred HHHHHHHhcCC-CCCcEEE-EeCCCcccccC-CC-cccHHHHHHHHHcCC
Q 002791 767 VILHASNLFRG-AVPPVIS-FNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (881)
Q Consensus 767 T~L~Aar~~~~-~~~PVLG-IN~G~LGFLt~-~~-~edl~~~L~~Il~G~ 812 (881)
|+..+++.+.. ...|.+| |+.|+.++|+. +. +++..++++.+.+|+
T Consensus 69 Tl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~ 118 (293)
T TIGR00147 69 TINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGD 118 (293)
T ss_pred hHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999997765 4566788 99999999998 66 678999999999887
No 42
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.36 E-value=9.4e-07 Score=87.60 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=45.3
Q ss_pred hHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCC-CCcEEEeCccCCChHHHHHHHH
Q 002791 308 IDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS-KKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 308 e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~-~~PVLVHCtAGKDRTGaLaaLl 368 (881)
+...++..|+.|++||+.+...|.++.+++|++++...+ +..++|||.+|+|||.+...++
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~ 145 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMY 145 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 456788999999999999999999999999999997543 4579999999999999555544
No 43
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.28 E-value=5.1e-06 Score=81.25 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=85.3
Q ss_pred cEEEcCCCCHhh----HHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHh
Q 002791 268 TFCRGGQVTEEG----LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (881)
Q Consensus 268 ~LyRSgqpT~eD----L~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~ 343 (881)
+|.....|+... ++.|+++|++|||-..... |. ...++..||.....|..+...|..+.++.+++++.
T Consensus 18 rFLIThnPtnaTln~fieELkKygvttvVRVCe~T-----Yd---t~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~ 89 (173)
T KOG2836|consen 18 RFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT-----YD---TTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVK 89 (173)
T ss_pred EEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc-----cC---CchhhhcCceEeecccccCCCCchHHHHHHHHHHH
Confidence 555555665544 5678889999999998775 21 11468899999999999888888888888887753
Q ss_pred ----cCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHH
Q 002791 344 ----NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (881)
Q Consensus 344 ----d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIia 381 (881)
+.++.-|-|||-||-+|+.+++++.+...|+-.+||++
T Consensus 90 ~~f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave 131 (173)
T KOG2836|consen 90 TKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVE 131 (173)
T ss_pred HHHhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHH
Confidence 34455699999999999999999999989999999976
No 44
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.24 E-value=4.8e-06 Score=83.12 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=78.6
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCC-CCCCHHHHHHHHHHHh--cCCCCcEEEeC
Q 002791 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVS--NSSKKPLYLHS 354 (881)
Q Consensus 278 eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~-~~ps~E~v~af~~il~--d~~~~PVLVHC 354 (881)
.+.+.++++|++-|+.+..+. |- ..+ -..-+..||+++.+|..|. ..|+.+.+.+..+++. ...++.++|||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~y-E~-~a~---s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPY-EL-LAP---SNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred ccchHHHhcCCCeEEEeCCch-hh-hhh---hHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 567888999999999998764 21 111 1134678999999999774 5788999988777765 24577899999
Q ss_pred ccCCChHHHHHHHHHHH-cCCCHHHHHHH
Q 002791 355 KEGVWRTYAMVSRWRQY-MARCASQISGQ 382 (881)
Q Consensus 355 tAGKDRTGaLaaLlr~l-~Gvs~ddIiaD 382 (881)
+||..|+.++++||+.. -+|+.++|.+-
T Consensus 117 KAGRtRSaTvV~cYLmq~~~wtpe~A~~~ 145 (183)
T KOG1719|consen 117 KAGRTRSATVVACYLMQHKNWTPEAAVEH 145 (183)
T ss_pred cCCCccchhhhhhhhhhhcCCCHHHHHHH
Confidence 99999999999998754 68999999773
No 45
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.18 E-value=4.4e-06 Score=85.08 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=57.6
Q ss_pred HhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeCccCCChHHHHHHHHHHH--cCCCHHHHHHHhhhc
Q 002791 312 ILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITS 386 (881)
Q Consensus 312 ~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d--~~~~PVLVHCtAGKDRTGaLaaLlr~l--~Gvs~ddIiaDYL~s 386 (881)
.+..|+.++++|+.|...|+.+++.++.+++.+ ..++.|+|||.+|.+|||++++.|+.+ .+...++++.-+...
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~ 146 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRR 146 (180)
T ss_pred eccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 355799999999999999999999888888753 345589999999999999777755443 346666666644433
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.97 E-value=3.1e-05 Score=84.34 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=85.1
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCH----HHHHHHHHH
Q 002791 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM----EQVEKFASL 341 (881)
Q Consensus 266 e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~----E~v~af~~i 341 (881)
.+.+|-|.+..+.+...|+++||+.|+|+.... ..+. .....+++|.++|+.|....+. +..-.|++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~-~~~~-------~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC-PNPR-------FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccC-Cccc-------cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 457888988899999999999999999998764 1111 1223489999999997544332 233345555
Q ss_pred HhcCCCCcEEEeCccCCChHHHHH-HHHHHHcCCCHHHHHHHhhhcccccccc
Q 002791 342 VSNSSKKPLYLHSKEGVWRTYAMV-SRWRQYMARCASQISGQTITSNDVLLKD 393 (881)
Q Consensus 342 l~d~~~~PVLVHCtAGKDRTGaLa-aLlr~l~Gvs~ddIiaDYL~s~~~l~~~ 393 (881)
. ...++-|||||.+|..|+-+++ |.+....|++.++|.+-+-..-+....|
T Consensus 151 a-~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN 202 (285)
T KOG1716|consen 151 A-REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPN 202 (285)
T ss_pred H-HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCC
Confidence 4 3457889999999999999544 4445668999999987666555544334
No 47
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.82 E-value=2.9e-05 Score=69.54 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.7
Q ss_pred EEEeecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHHH
Q 002791 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (881)
Q Consensus 319 yIhIPV~d~~~ps~-E~v~af~~il~d~-----~~~PVLVHCtAGKDRTGaLaaLlr~l 371 (881)
|.+.+..+...|.. +.+..|+..+... .++||+|||.+|++|||++++++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44455555566654 6777777766432 26799999999999999888777653
No 48
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.82 E-value=2.9e-05 Score=69.54 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.7
Q ss_pred EEEeecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHHH
Q 002791 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (881)
Q Consensus 319 yIhIPV~d~~~ps~-E~v~af~~il~d~-----~~~PVLVHCtAGKDRTGaLaaLlr~l 371 (881)
|.+.+..+...|.. +.+..|+..+... .++||+|||.+|++|||++++++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44455555566654 6777777766432 26799999999999999888777653
No 49
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.80 E-value=0.00013 Score=74.01 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=72.5
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCC-HHHHHHHHHHHh--
Q 002791 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (881)
Q Consensus 267 ~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps-~E~v~af~~il~-- 343 (881)
+.||-|......+...|++.||+.|||-..+. ... ...+++|+.+|+.|..... -+.++...+.|.
T Consensus 22 ~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~----------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 22 PSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNT----------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cceeEeccccccCHHHHHhcCceEEEEcccCC-CCc----------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 47888866667778889999999999998764 111 1358999999998643221 122333333221
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHH-HHHcCCCHHHHH
Q 002791 344 NSSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQIS 380 (881)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGaLaaLl-r~l~Gvs~ddIi 380 (881)
....+..|+||.||..|+..+++.+ .++.+++..||-
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy 128 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAY 128 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHH
Confidence 2457889999999999999766554 567888888883
No 50
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.73 E-value=0.00011 Score=79.05 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=75.5
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCH-HHHHHHHHHHhc
Q 002791 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM-EQVEKFASLVSN 344 (881)
Q Consensus 266 e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~-E~v~af~~il~d 344 (881)
-+-||-|+.-+...+.-|+++||++|||..+.- ... +-+...+.|..||+.|..--.. .-+.+.+.+|.+
T Consensus 176 lp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--pn~-------fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 176 LPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--PNN-------FENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred ccchhcccccccccHHHHHhcCceEEEecCCCC--cch-------hhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 457888988888899999999999999997753 111 2244678999999996532221 123344555543
Q ss_pred --CCCCcEEEeCccCCChHHHHHHHHH-HHcCCCHHHHHH
Q 002791 345 --SSKKPLYLHSKEGVWRTYAMVSRWR-QYMARCASQISG 381 (881)
Q Consensus 345 --~~~~PVLVHCtAGKDRTGaLaaLlr-~l~Gvs~ddIia 381 (881)
..+-.|||||-+|..|+-++...|+ +-+..+.++|.+
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd 286 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYD 286 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHH
Confidence 3455799999999999996555543 446788888865
No 51
>PRK13057 putative lipid kinase; Reviewed
Probab=97.12 E-value=0.0011 Score=71.99 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=71.0
Q ss_pred EEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccch-hhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHH
Q 002791 695 VLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHAS 772 (881)
Q Consensus 695 IV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~-~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~Aa 772 (881)
||.+|.. .....+.++.++|.+ .|+++.+.... ...... . ..+.....|.||++|||||+=.++
T Consensus 2 ~I~Np~sg~~~~~~~~i~~~l~~-~g~~~~~~~t~~~~~a~~---------~----~~~~~~~~d~iiv~GGDGTv~~v~ 67 (287)
T PRK13057 2 LLVNRHARSGRAALAAARAALEA-AGLELVEPPAEDPDDLSE---------V----IEAYADGVDLVIVGGGDGTLNAAA 67 (287)
T ss_pred EEECCCCCCcchhHHHHHHHHHH-cCCeEEEEecCCHHHHHH---------H----HHHHHcCCCEEEEECchHHHHHHH
Confidence 4555553 222457788889876 58775543221 110000 0 011234579999999999999999
Q ss_pred HhcCCCCCcEEEEeCCCcccccC-CC-cccHHHHHHHHHcCC
Q 002791 773 NLFRGAVPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (881)
Q Consensus 773 r~~~~~~~PVLGIN~G~LGFLt~-~~-~edl~~~L~~Il~G~ 812 (881)
..+...++|+.-|..|+-.-++. +. +.+++++++.+..|.
T Consensus 68 ~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~ 109 (287)
T PRK13057 68 PALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQ 109 (287)
T ss_pred HHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCC
Confidence 98887889988899998777766 33 468999999999886
No 52
>PRK11914 diacylglycerol kinase; Reviewed
Probab=97.02 E-value=0.0039 Score=68.19 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=75.0
Q ss_pred CCcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--ccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEc
Q 002791 689 TPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (881)
Q Consensus 689 ~pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~GveV~v--E~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLG 763 (881)
.+++++||.+|.. ...+.+.++.+.|.+ .|+++.+ .....+. .. + ........+|+||++|
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~~-~~---------~---a~~~~~~~~d~vvv~G 72 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHDA-RH---------L---VAAALAKGTDALVVVG 72 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHHH-HH---------H---HHHHHhcCCCEEEEEC
Confidence 3578999999884 356778888899876 5766432 2221111 00 0 0011134579999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCcccccC-CCc--ccHHHHHHHHHcCCC
Q 002791 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPF--EDYRQDLRQVIYGNN 813 (881)
Q Consensus 764 GDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~-~~~--edl~~~L~~Il~G~y 813 (881)
||||+=.++..+...++|+-=|-.|+-.=++- +.. ++.+++++.+..|..
T Consensus 73 GDGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~ 125 (306)
T PRK11914 73 GDGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWT 125 (306)
T ss_pred CchHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCc
Confidence 99999998888877788877778887554443 442 478999999998873
No 53
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=96.94 E-value=0.0026 Score=66.41 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=39.7
Q ss_pred CCCC-HHHHHHHHHHHhcC----CCCcEEEeCccCCChHHHHHHHHHHH------cCCCHHHHHHHhhh
Q 002791 328 TAPT-MEQVEKFASLVSNS----SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQTIT 385 (881)
Q Consensus 328 ~~ps-~E~v~af~~il~d~----~~~PVLVHCtAGKDRTGaLaaLlr~l------~Gvs~ddIiaDYL~ 385 (881)
..|. .+++.+|++.+... ..+|++|||.+|.+|||+++++...+ ..++..+++...-.
T Consensus 142 ~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~ 210 (231)
T cd00047 142 GVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRS 210 (231)
T ss_pred CccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 3343 36777777776533 36799999999999999888776432 13677777665443
No 54
>PRK00861 putative lipid kinase; Reviewed
Probab=96.91 E-value=0.0042 Score=67.76 Aligned_cols=109 Identities=14% Similarity=0.238 Sum_probs=71.5
Q ss_pred CcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEccchh--hhhhcCCCCccceeeeccCccccCCCccEEEEEcC
Q 002791 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVH--DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (881)
Q Consensus 690 pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~GveV~vE~~~~--~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGG 764 (881)
.++++||.+|.. .....+.++...|.+...++++...... ..+. .....+..|+||++||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GG 66 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLA---------------QEAIERGAELIIASGG 66 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHH---------------HHHHhcCCCEEEEECC
Confidence 368999999874 2445567788888652234444322211 1110 0111345799999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCcccccC-CC-cccHHHHHHHHHcCCC
Q 002791 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGNN 813 (881)
Q Consensus 765 DGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~-~~-~edl~~~L~~Il~G~y 813 (881)
|||+=.++..+....+|+-=|-.|+-.=++- +. +.+++++++.+.+|..
T Consensus 67 DGTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~ 117 (300)
T PRK00861 67 DGTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKT 117 (300)
T ss_pred hHHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCc
Confidence 9999999998887777766677887444333 43 3578999999998873
No 55
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=96.82 E-value=0.0047 Score=65.70 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=39.0
Q ss_pred CCC-CHHHHHHHHHHHhcC---CCCcEEEeCccCCChHHHHHHHHHHH------cCCCHHHHHHHhh
Q 002791 328 TAP-TMEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQTI 384 (881)
Q Consensus 328 ~~p-s~E~v~af~~il~d~---~~~PVLVHCtAGKDRTGaLaaLlr~l------~Gvs~ddIiaDYL 384 (881)
..| +.+.+.+|+..+... ..+|++|||.+|.+|||+++++...+ ..++..+++...-
T Consensus 170 ~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR 236 (258)
T smart00194 170 GVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELR 236 (258)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344 456677777766432 16799999999999999887775432 2367777766544
No 56
>PRK13054 lipid kinase; Reviewed
Probab=96.53 E-value=0.0082 Score=65.66 Aligned_cols=108 Identities=22% Similarity=0.202 Sum_probs=69.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccch----hhhhhcCCCCccceeeeccCccccCCCccEEEEEcC
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~----~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGG 764 (881)
++++++||.+++......+.++..+|.+ .++++.+.... +..+. ........|.||++||
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~GG 65 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYV---------------EEALALGVATVIAGGG 65 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHH---------------HHHHHcCCCEEEEECC
Confidence 4678889998776455667778888876 57765432211 11110 0111345799999999
Q ss_pred chHHHHHHHhcCC----CCCcEEEEeCCCccccc-CCC-cccHHHHHHHHHcCC
Q 002791 765 DGVILHASNLFRG----AVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (881)
Q Consensus 765 DGT~L~Aar~~~~----~~~PVLGIN~G~LGFLt-~~~-~edl~~~L~~Il~G~ 812 (881)
|||+=.++..+.. ..+|+-=|-.|+-.=++ .+. +.+..++++.+..|.
T Consensus 66 DGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~ 119 (300)
T PRK13054 66 DGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGR 119 (300)
T ss_pred ccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 9999888887653 23565556777643333 233 357889999998887
No 57
>PRK13059 putative lipid kinase; Reviewed
Probab=96.35 E-value=0.016 Score=63.31 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=69.7
Q ss_pred cEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE-ccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002791 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (881)
Q Consensus 691 kkVlIV~K~~~---ea~e~a~eL~~~L~~~~GveV~v-E~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDG 766 (881)
++++||.+|.. ...+.+.++.++|.+ .|+++.+ ......... .......+..|.||++||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~vi~~GGDG 67 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLK-------------NAFKDIDESYKYILIAGGDG 67 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHH-------------HHHHHhhcCCCEEEEECCcc
Confidence 57889999884 345667788888876 5776543 111111000 00112234679999999999
Q ss_pred HHHHHHHhcC--CCCCcEEEEeCCCcccccC-CC-cccHHHHHHHHHcCC
Q 002791 767 VILHASNLFR--GAVPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (881)
Q Consensus 767 T~L~Aar~~~--~~~~PVLGIN~G~LGFLt~-~~-~edl~~~L~~Il~G~ 812 (881)
|+=.++.-+. +..+|+-=|-.|+-.-++- +. +.+..++++.+..|+
T Consensus 68 Tv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 117 (295)
T PRK13059 68 TVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSK 117 (295)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCC
Confidence 9888887665 3456755567787444333 33 467899999999887
No 58
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.30 E-value=0.003 Score=68.34 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCCcEEEeCccCCChHHHHHHHH
Q 002791 327 RTAPTMEQVEKFASLVSNS--SKKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 327 ~~~ps~E~v~af~~il~d~--~~~PVLVHCtAGKDRTGaLaaLl 368 (881)
...|+...+.+++.-+.+. ..+|++|||.||.||||+++++-
T Consensus 196 ~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD 239 (302)
T COG5599 196 FNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALD 239 (302)
T ss_pred cCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHH
Confidence 3445455566666666444 56899999999999999777764
No 59
>PRK13055 putative lipid kinase; Reviewed
Probab=96.27 E-value=0.025 Score=63.02 Aligned_cols=107 Identities=11% Similarity=0.160 Sum_probs=68.2
Q ss_pred CcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--cc-c--hhhhhhcCCCCccceeeeccCccccCCCccEEEE
Q 002791 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EP-D--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVAC 761 (881)
Q Consensus 690 pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~GveV~v--E~-~--~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIv 761 (881)
.++++||.+|.. .....+.++.+.|.+ .|+++.+ .. . -+..+.. ......+|+||+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~---------------~~~~~~~d~vvv 65 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK---------------RAAEAGFDLIIA 65 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH---------------HHhhcCCCEEEE
Confidence 368999999885 345667888888876 5765432 21 1 1111100 011245799999
Q ss_pred EcCchHHHHHHHhcCC--CCCcEEEEeCCCcccccC-CC-cc-cHHHHHHHHHcCC
Q 002791 762 LGGDGVILHASNLFRG--AVPPVISFNLGSLGFLTS-HP-FE-DYRQDLRQVIYGN 812 (881)
Q Consensus 762 LGGDGT~L~Aar~~~~--~~~PVLGIN~G~LGFLt~-~~-~e-dl~~~L~~Il~G~ 812 (881)
+|||||+=.++..+.. ..+|+-=|-.|+-.-++- +. +. +..++++.+..|.
T Consensus 66 ~GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~ 121 (334)
T PRK13055 66 AGGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQ 121 (334)
T ss_pred ECCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCC
Confidence 9999998888887664 345544467787444333 33 23 6889999998887
No 60
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=96.26 E-value=0.0055 Score=70.92 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=66.5
Q ss_pred HHHHHHc--CCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHH----HHhcCCCCcEEEe
Q 002791 280 LKWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSSKKPLYLH 353 (881)
Q Consensus 280 L~~Lkel--GIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~----il~d~~~~PVLVH 353 (881)
..+|... |=-.|.||+++. .|. . ..-.| +...+|..+..+|+.+.+..|.+ ++......-+.+|
T Consensus 44 ~~fL~s~H~~~y~vyNL~~er----~yd-~----~~f~g-~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvH 113 (434)
T KOG2283|consen 44 VLFLDSKHKDHYKVYNLSSER----LYD-P----SRFHG-RVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVH 113 (434)
T ss_pred HHHHhhccCCceEEEecCccc----cCC-c----ccccc-ceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEE
Confidence 4455443 555699999743 121 0 11122 45558999999999999887754 4544455568899
Q ss_pred CccCCChHHHHHHHHHHHcC--CCHHHHHHHhhhcc
Q 002791 354 SKEGVWRTYAMVSRWRQYMA--RCASQISGQTITSN 387 (881)
Q Consensus 354 CtAGKDRTGaLaaLlr~l~G--vs~ddIiaDYL~s~ 387 (881)
|++||+|||+|+..++.+.| .++++|+..|....
T Consensus 114 Ck~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 114 CKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred ccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 99999999976666666656 55788888887554
No 61
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.99 E-value=0.012 Score=65.01 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=19.7
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002791 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLaaLl 368 (881)
..+|++|||++|.||||+++++-
T Consensus 220 ~~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 220 KIAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCCEEEECCCCCchhHHHHHHH
Confidence 35799999999999999877763
No 62
>PRK13337 putative lipid kinase; Reviewed
Probab=95.97 E-value=0.042 Score=60.27 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=67.4
Q ss_pred cEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--ccchh--hhhhcCCCCccceeeeccCccccCCCccEEEEEc
Q 002791 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPDVH--DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (881)
Q Consensus 691 kkVlIV~K~~~---ea~e~a~eL~~~L~~~~GveV~v--E~~~~--~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLG 763 (881)
++++||.+|.. .....+.++.+.|.+ .++++.+ .+... ..+. .....+..|+||++|
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~G 65 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATLAA---------------ERAVERKFDLVIAAG 65 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHHHH---------------HHHHhcCCCEEEEEc
Confidence 58899999884 234567788888876 5766432 21110 0110 001124579999999
Q ss_pred CchHHHHHHHhcCC--CCCcEEEEeCCCcccccC-CC-cccHHHHHHHHHcCC
Q 002791 764 GDGVILHASNLFRG--AVPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (881)
Q Consensus 764 GDGT~L~Aar~~~~--~~~PVLGIN~G~LGFLt~-~~-~edl~~~L~~Il~G~ 812 (881)
||||+=.++..+.. ..+|+-=|-.|+-.-++- +. +.+++++++.+..|.
T Consensus 66 GDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~ 118 (304)
T PRK13337 66 GDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGH 118 (304)
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99998888876553 345655566787554443 33 357889999998886
No 63
>PLN02727 NAD kinase
Probab=95.95 E-value=0.014 Score=72.32 Aligned_cols=180 Identities=9% Similarity=-0.044 Sum_probs=108.3
Q ss_pred hccccccccccccchhccccCCCcccc-cccccccccchhhccccC-------cc---------ccccccc--cCCcccc
Q 002791 424 QTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVG-------SL---------GTTFSKE--TDPFKAQ 484 (881)
Q Consensus 424 ~~~~~~~~e~~r~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~---------~~~~~~~--~~~~~~~ 484 (881)
...++.++|+.|.|++..|..++++.+ ++...|++..-...-+-+ -. .+.|.|. +-|----
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (986)
T PLN02727 409 GESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVGTGVESQSNFNMESDPLKAQVPPCDVFSKKEMSKFFRSKKIYPPTYL 488 (986)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeecCcccccCCCcccccHHHHHHHHhhcccCCcccc
Confidence 456888999999999999999999987 777666544321110000 00 0111111 1121111
Q ss_pred CCCCcccchHHHhhhhhcc------ccCCCccccccccccccCCccccCCC-CccccccccccccccCCCCCCCCCCCCC
Q 002791 485 VPPSNFVSKKEMSRFFRSK------TTSPPRYFNYQSKRMDVLPSEIVSSG-PVSGVAETRYSQWSLSGNNLSPNHQNLP 557 (881)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (881)
.+....|++--..+|-+.. -+-|.+-+---+++...+-+++.+.+ +.+++++.++|||++++++++++.|++.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~d~qss~~~~~k~sNGss~~s~~s~s~~Ss~ 568 (986)
T PLN02727 489 NYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSI 568 (986)
T ss_pred cchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCccccchhhccccCCCCccccccCcccccccc
Confidence 1111222221111000000 00000100000111222335667777 8889999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCccCccccCCCcccccccccccccccccccccccccc
Q 002791 558 AGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVR 610 (881)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (881)
..+.+++||+++++|++..|.... ++.+ +.++++|.+.++.+++..
T Consensus 569 ~~~~~~~ng~~stsv~~nl~~~v~-----s~s~--res~s~Ng~a~vgssd~~ 614 (986)
T PLN02727 569 TNGNPSNNGASSSTVSDNLERSVA-----SVSV--RESQRSNGKASLGSSDDE 614 (986)
T ss_pred cCCccccCCCccccccCCCccccc-----cccc--ccccccCCccccccccCc
Confidence 999999999999999988887766 3333 344788999888887765
No 64
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=95.85 E-value=0.036 Score=60.48 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=64.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccch----hhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~----~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT 767 (881)
|+++|.++.......+.++.+.|.+ .|+++.+.... +..+. ........|.||++|||||
T Consensus 1 ~~~~I~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 1 KALLILNGKQADNEDVREAVGDLRD-EGIQLHVRVTWEKGDAQRYV---------------AEALALGVSTVIAGGGDGT 64 (293)
T ss_pred CEEEEEeCCccchhHHHHHHHHHHH-CCCeEEEEEecCCCCHHHHH---------------HHHHHcCCCEEEEEcCChH
Confidence 3567777664344456677888866 57765432111 11110 0011245799999999999
Q ss_pred HHHHHHhcCC----CCCcEEEEeCCCcc-cccCCC-cccHHHHHHHHHcCC
Q 002791 768 ILHASNLFRG----AVPPVISFNLGSLG-FLTSHP-FEDYRQDLRQVIYGN 812 (881)
Q Consensus 768 ~L~Aar~~~~----~~~PVLGIN~G~LG-FLt~~~-~edl~~~L~~Il~G~ 812 (881)
+=.++.-+.. ..+|+-=|-.|+-. |--.+. +.+.+++++.++.|.
T Consensus 65 i~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~ 115 (293)
T TIGR03702 65 LREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGA 115 (293)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 8888876652 23455556778743 333344 467899999999886
No 65
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.80 E-value=0.014 Score=64.56 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 002791 347 KKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 347 ~~PVLVHCtAGKDRTGaLaaLl 368 (881)
.+||+|||.+|.||||+++++-
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid 250 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAID 250 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHH
Confidence 4799999999999999887764
No 66
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=95.72 E-value=0.015 Score=65.08 Aligned_cols=59 Identities=27% Similarity=0.389 Sum_probs=51.2
Q ss_pred CccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCccccc--CCCcccHHHHHHHHHcCCCC
Q 002791 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT--SHPFEDYRQDLRQVIYGNNT 814 (881)
Q Consensus 755 ~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G~LGFLt--~~~~edl~~~L~~Il~G~y~ 814 (881)
.+|+|+..|||||.=-.+.-. +.++|||||..|.--|.. .++|+.....+..+++|+++
T Consensus 100 gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r 160 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNAR 160 (355)
T ss_pred CceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhccccc
Confidence 699999999999987777766 679999999999877774 57899999999999999753
No 67
>PRK12361 hypothetical protein; Provisional
Probab=95.68 E-value=0.044 Score=65.03 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=70.6
Q ss_pred CcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEccch--hhhhhcCCCCccceeeeccCccccCCCccEEEEEcC
Q 002791 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (881)
Q Consensus 690 pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~GveV~vE~~~--~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGG 764 (881)
.+++.||.+|.. ...+.+.++.+.|.+...++++..... +..+. ..-..+..|.||++||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la---------------~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALA---------------KQARKAGADIVIACGG 306 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHH---------------HHHHhcCCCEEEEECC
Confidence 568889998874 356678888888876322333322111 11110 0111245799999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCcccccC-C-Cc----ccHHHHHHHHHcCC
Q 002791 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-H-PF----EDYRQDLRQVIYGN 812 (881)
Q Consensus 765 DGT~L~Aar~~~~~~~PVLGIN~G~LGFLt~-~-~~----edl~~~L~~Il~G~ 812 (881)
|||+=.++..+.+.++|+-=|-.|+-.-++- + .. .+.+++++.+.+|.
T Consensus 307 DGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~ 360 (547)
T PRK12361 307 DGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGH 360 (547)
T ss_pred CcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCC
Confidence 9999999988877777766677787654433 2 11 47889999998887
No 68
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=95.53 E-value=0.067 Score=62.89 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=76.9
Q ss_pred cccccCCchhh---------hhcccccCCcEEEEEecCCh---hHHHHHH-HHHHHHhcCCCeEEEEccch--hh--hhh
Q 002791 671 SLAFTHPSTQQ---------QMLMWKTTPRTVLVLKKPGP---ALMEEAK-EVASFLYHQEKMNILVEPDV--HD--IFA 733 (881)
Q Consensus 671 ~~~~~~pstq~---------~~L~W~~~pkkVlIV~K~~~---ea~e~a~-eL~~~L~~~~GveV~vE~~~--~~--~l~ 733 (881)
...|.|++.+. ..|.+...|++++||.+|.. .+...+. ++...|.+ .++++.+.... .+ .+.
T Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~la 161 (481)
T PLN02958 83 DFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKEVV 161 (481)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHHHH
Confidence 45666665432 13334456899999999873 3455544 56668866 57664432211 11 110
Q ss_pred cCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCC-------CCcEEEEeCCC-cccccCC----C-ccc
Q 002791 734 RIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGA-------VPPVISFNLGS-LGFLTSH----P-FED 800 (881)
Q Consensus 734 ~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~-------~~PVLGIN~G~-LGFLt~~----~-~ed 800 (881)
. .......|.||++||||||=.+++-+... .+|+-=|-.|+ -+|-..+ . +.+
T Consensus 162 ~---------------~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~ 226 (481)
T PLN02958 162 R---------------TMDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCS 226 (481)
T ss_pred H---------------HhhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcC
Confidence 0 00124579999999999988777765432 46665567776 3343333 2 457
Q ss_pred HHHHHHHHHcCCC
Q 002791 801 YRQDLRQVIYGNN 813 (881)
Q Consensus 801 l~~~L~~Il~G~y 813 (881)
..+++..|+.|..
T Consensus 227 ~~~A~~~I~~g~~ 239 (481)
T PLN02958 227 ATNAVLAIIRGHK 239 (481)
T ss_pred HHHHHHHHHcCCc
Confidence 8888999998873
No 69
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=95.46 E-value=0.016 Score=64.36 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.0
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 002791 348 KPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 348 ~PVLVHCtAGKDRTGaLaaLl 368 (881)
+|++|||.+|.||||+++++-
T Consensus 230 ~PIvVHCsaGvGRtGtfcaid 250 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVD 250 (312)
T ss_pred CCEEEEecCCCcchhHHHHHH
Confidence 799999999999999888774
No 70
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=95.26 E-value=0.043 Score=56.29 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002791 331 TMEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (881)
Q Consensus 331 s~E~v~af~~il~---d~~~~PVLVHCtAGKDRTGaLaaLlr~ 370 (881)
+.+.+..|++.+. ...+.|++|||.+|.+|||+++++...
T Consensus 151 ~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 151 SPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp SSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccCCccceEeecccccccccccccchhh
Confidence 3455555555543 235789999999999999988877644
No 71
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=95.24 E-value=0.086 Score=62.00 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHhcC-----------C-CCcEEEeCccCCChHHHHHHHHHHH-cC-CCHHHHHHHhhhcccc-cccchH
Q 002791 331 TMEQVEKFASLVSNS-----------S-KKPLYLHSKEGVWRTYAMVSRWRQY-MA-RCASQISGQTITSNDV-LLKDST 395 (881)
Q Consensus 331 s~E~v~af~~il~d~-----------~-~~PVLVHCtAGKDRTGaLaaLlr~l-~G-vs~ddIiaDYL~s~~~-l~~~~~ 395 (881)
+.+.+..|++.+... . ..| +|||++|.+|||++++++... .+ .+.++++.+.-.+-.. +-...+
T Consensus 439 ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~e 517 (535)
T PRK15375 439 STDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDAS 517 (535)
T ss_pred ChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHH
Confidence 445577776665321 1 135 799999999999888887542 22 6888888876655443 555544
Q ss_pred H
Q 002791 396 R 396 (881)
Q Consensus 396 ~ 396 (881)
+
T Consensus 518 Q 518 (535)
T PRK15375 518 Q 518 (535)
T ss_pred H
Confidence 4
No 72
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=95.17 E-value=0.065 Score=51.47 Aligned_cols=105 Identities=21% Similarity=0.286 Sum_probs=57.8
Q ss_pred EEEEEecCCh--hHHHHHHHHHHHHhcCCCeE--EEEccch--hhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc
Q 002791 692 TVLVLKKPGP--ALMEEAKEVASFLYHQEKMN--ILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (881)
Q Consensus 692 kVlIV~K~~~--ea~e~a~eL~~~L~~~~Gve--V~vE~~~--~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGD 765 (881)
+++||.+|.. .... ++++...|.. .+.. ++..+.. .+.+.. ........|.||++|||
T Consensus 1 k~~vi~Np~sG~~~~~-~~~v~~~l~~-~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~~~~ivv~GGD 64 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK-WKKVEPALRA-AGIDYEVIETESAGHAEALAR--------------ILALDDYPDVIVVVGGD 64 (130)
T ss_dssp SEEEEEETTSTTSHHH-HHHHHHHHHH-TTCEEEEEEESSTTHHHHHHH--------------HHHHTTS-SEEEEEESH
T ss_pred CEEEEECCCCCCCchh-HHHHHHHHHH-cCCceEEEEEeccchHHHHHH--------------HHhhccCccEEEEEcCc
Confidence 4678887774 2222 4778888776 3433 3332221 111110 01222235999999999
Q ss_pred hHHHHHHHhcCCCCC----cEEEEeCCCcccccC-CCc-ccHHH-HHHHHHcCC
Q 002791 766 GVILHASNLFRGAVP----PVISFNLGSLGFLTS-HPF-EDYRQ-DLRQVIYGN 812 (881)
Q Consensus 766 GT~L~Aar~~~~~~~----PVLGIN~G~LGFLt~-~~~-edl~~-~L~~Il~G~ 812 (881)
||+=.++..+..... |+.=|-+|+-.=|+- +.. .+... +...+..++
T Consensus 65 GTl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~ar~lg~~~~~~~~a~~~~~~~~ 118 (130)
T PF00781_consen 65 GTLNEVVNGLMGSDREDKPPLGIIPAGTGNDFARSLGIPSDPEANAALLIILGR 118 (130)
T ss_dssp HHHHHHHHHHCTSTSSS--EEEEEE-SSS-HHHHHTT--SSHHH-HHHHHHHSE
T ss_pred cHHHHHHHHHhhcCCCccceEEEecCCChhHHHHHcCCCCCcHHHHHHHHHhCC
Confidence 999999998876554 777778887544433 332 33444 455455453
No 73
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=95.07 E-value=0.026 Score=63.00 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.9
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 002791 348 KPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 348 ~PVLVHCtAGKDRTGaLaaLl 368 (881)
+|++|||.+|.||||+++++-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid 268 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAID 268 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHH
Confidence 799999999999999887764
No 74
>PHA02738 hypothetical protein; Provisional
Probab=94.97 E-value=0.029 Score=62.51 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.0
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 002791 347 KKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 347 ~~PVLVHCtAGKDRTGaLaaLl 368 (881)
.+||+|||.+|.||||+++++-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaid 248 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVD 248 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHH
Confidence 4699999999999999777664
No 75
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=94.51 E-value=0.12 Score=57.24 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=71.3
Q ss_pred CcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEccchh----hhhhcCCCCccceeeeccCccccCCCccEEEEE
Q 002791 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVH----DIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (881)
Q Consensus 690 pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~GveV~vE~~~~----~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvL 762 (881)
.+++.++.++.. .....+.++.+.|.+ .|.++.+-.... ..+. ..-.....|.||+.
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~g~a~~~a---------------~~a~~~~~D~via~ 65 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEAGDAIEIA---------------REAAVEGYDTVIAA 65 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecCccHHHHH---------------HHHHhcCCCEEEEe
Confidence 467888888774 367778899999987 576544321111 1110 01112368999999
Q ss_pred cCchHHHHHHHhcCCCCCcEEEE-eCCCcccccC---CCcccHHHHHHHHHcCC
Q 002791 763 GGDGVILHASNLFRGAVPPVISF-NLGSLGFLTS---HPFEDYRQDLRQVIYGN 812 (881)
Q Consensus 763 GGDGT~L~Aar~~~~~~~PVLGI-N~G~LGFLt~---~~~edl~~~L~~Il~G~ 812 (881)
|||||+=.++.-+...+.|.||| -.|+-.=++- ++.+++.++++.+.+|+
T Consensus 66 GGDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~ 119 (301)
T COG1597 66 GGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGE 119 (301)
T ss_pred cCcchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCC
Confidence 99999999999887766663555 4566544443 44456999999999987
No 76
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=94.32 E-value=0.15 Score=49.05 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=27.5
Q ss_pred CccEEEEEcCchHHHHHHHhcCCCC-----CcEEEEeCCC
Q 002791 755 RVDFVACLGGDGVILHASNLFRGAV-----PPVISFNLGS 789 (881)
Q Consensus 755 ~~DlVIvLGGDGT~L~Aar~~~~~~-----~PVLGIN~G~ 789 (881)
..|.||++|||||+=.++..+.... +|+.=|-.|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4689999999999999988776433 6776667774
No 77
>PLN02160 thiosulfate sulfurtransferase
Probab=94.20 E-value=0.19 Score=49.24 Aligned_cols=86 Identities=16% Similarity=0.305 Sum_probs=51.1
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCC----CCCCHHHHHHHHHHHhcCCCCcE
Q 002791 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR----TAPTMEQVEKFASLVSNSSKKPL 350 (881)
Q Consensus 275 pT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~----~~ps~E~v~af~~il~d~~~~PV 350 (881)
++++++..+.+.+ ..|||.|+.. + |. .-...|...+++|.... ...+.+....+...+ ..++||
T Consensus 17 i~~~e~~~~~~~~-~~lIDVR~~~-E---~~-----~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~--~~~~~I 84 (136)
T PLN02160 17 VDVSQAKTLLQSG-HQYLDVRTQD-E---FR-----RGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL--NPADDI 84 (136)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----cCCCCCcceecccchhcCcccccCCHHHHHHHHhcc--CCCCcE
Confidence 5677887776667 4799999975 1 11 11223434567776321 112233333333322 356799
Q ss_pred EEeCccCCChHHHHHHHHHHHcCC
Q 002791 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 351 LVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
++||..|. |+...+..+.. .|.
T Consensus 85 ivyC~sG~-RS~~Aa~~L~~-~G~ 106 (136)
T PLN02160 85 LVGCQSGA-RSLKATTELVA-AGY 106 (136)
T ss_pred EEECCCcH-HHHHHHHHHHH-cCC
Confidence 99999998 99877666644 453
No 78
>PLN02204 diacylglycerol kinase
Probab=94.10 E-value=0.51 Score=56.91 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=45.2
Q ss_pred cCCcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeE--EEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEE
Q 002791 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVAC 761 (881)
Q Consensus 688 ~~pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~Gve--V~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIv 761 (881)
..+|+++||.+|.. .....+.++...|.. .+++ |++.+...+...- . ....+ .....|.||+
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~-a~i~~~v~~T~~aghA~d~------~-----~~~~~~~l~~~D~VVa 224 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIR-AKVKTKVIVTERAGHAFDV------M-----ASISNKELKSYDGVIA 224 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHH-cCCeEEEEEecCcchHHHH------H-----HHHhhhhccCCCEEEE
Confidence 35889999999873 456677788888875 4665 4443332111100 0 00011 1245799999
Q ss_pred EcCchHHHHHHH
Q 002791 762 LGGDGVILHASN 773 (881)
Q Consensus 762 LGGDGT~L~Aar 773 (881)
+||||||=.+++
T Consensus 225 VGGDGt~nEVlN 236 (601)
T PLN02204 225 VGGDGFFNEILN 236 (601)
T ss_pred EcCccHHHHHHH
Confidence 999999665555
No 79
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=94.05 E-value=0.068 Score=66.69 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhc---CCCCcEEEeCccCCChHHHHHHH
Q 002791 332 MEQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAMVSR 367 (881)
Q Consensus 332 ~E~v~af~~il~d---~~~~PVLVHCtAGKDRTGaLaaL 367 (881)
..++..|++.+.. ..+-||++||.||.||||+++.+
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~ 1083 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILM 1083 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHH
Confidence 4555556555532 22569999999999999966544
No 80
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.33 E-value=1.2 Score=54.19 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCC---CCcEEEeCccCCChHHHHHHH----HHHHcCCCHHHH
Q 002791 333 EQVEKFASLVSNSS---KKPLYLHSKEGVWRTYAMVSR----WRQYMARCASQI 379 (881)
Q Consensus 333 E~v~af~~il~d~~---~~PVLVHCtAGKDRTGaLaaL----lr~l~Gvs~ddI 379 (881)
..+..|+.-+...- .-||+|||..|.+|||+.+++ -|+.-|+-.=||
T Consensus 910 rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDI 963 (1004)
T KOG0793|consen 910 RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDI 963 (1004)
T ss_pred HHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhH
Confidence 34566766664321 349999999999999943332 234345554444
No 81
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=93.29 E-value=0.35 Score=49.15 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=49.0
Q ss_pred HcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEE----EEeecCCCCCCCHHHHHHHHHHHhc-CCCCcEEEeCccCCC
Q 002791 285 EKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVEL----IKIPVEVRTAPTMEQVEKFASLVSN-SSKKPLYLHSKEGVW 359 (881)
Q Consensus 285 elGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~y----IhIPV~d~~~ps~E~v~af~~il~d-~~~~PVLVHCtAGKD 359 (881)
..|-+.+|.|+...... ..+ .. ...+.-+.. +..|=..+..|.++.+...++++.. ....|+||||.+|..
T Consensus 30 rh~~t~mlsl~a~~t~~-~~p-a~--~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGIS 105 (172)
T COG5350 30 RHGPTHMLSLLAKGTYF-HRP-AV--IAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGIS 105 (172)
T ss_pred hcCCceEEEeecccccc-cCc-cc--cchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccc
Confidence 45899999999864111 111 10 111111121 1222233467789999999999853 345799999999999
Q ss_pred hHHHHHHH
Q 002791 360 RTYAMVSR 367 (881)
Q Consensus 360 RTGaLaaL 367 (881)
|+.+.++.
T Consensus 106 RStA~A~i 113 (172)
T COG5350 106 RSTAAALI 113 (172)
T ss_pred cchHHHHH
Confidence 99966655
No 82
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=93.28 E-value=0.024 Score=48.93 Aligned_cols=42 Identities=17% Similarity=0.007 Sum_probs=34.6
Q ss_pred HHHHhhhhhhhhhhhccchhHHhHHhhhccccccccccccch
Q 002791 397 TRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDM 438 (881)
Q Consensus 397 ~~k~~~~~~~~~l~s~~g~ie~~ld~~~~~~~~~~e~~r~n~ 438 (881)
++.+.|.+++..++++||+++.|+.+.+|+++++++.+|+++
T Consensus 26 ~~~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 26 VRPEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp --HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 456788899999999999999999999999999999999875
No 83
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=93.16 E-value=0.33 Score=44.12 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=46.3
Q ss_pred CHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002791 276 TEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (881)
Q Consensus 276 T~eDL~~LkelGI-KTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHC 354 (881)
+++++..+.+.|= -.|||.|++. + +. .-...| -+++|+......-.+........+ ..++||++||
T Consensus 2 s~~el~~~l~~~~~~~liDvR~~~-e---~~-----~ghi~g--a~~ip~~~~~~~~~~~~~~~~~~~--~~~~~ivv~C 68 (100)
T cd01523 2 DPEDLYARLLAGQPLFILDVRNES-D---YE-----RWKIDG--ENNTPYFDPYFDFLEIEEDILDQL--PDDQEVTVIC 68 (100)
T ss_pred CHHHHHHHHHcCCCcEEEEeCCHH-H---Hh-----hcccCC--CcccccccchHHHHHhhHHHHhhC--CCCCeEEEEc
Confidence 5667776655542 4799999875 1 11 111223 245666522110000112223333 3568999999
Q ss_pred ccCCChHHHHHHHHHHHcCCC
Q 002791 355 KEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 355 tAGKDRTGaLaaLlr~l~Gvs 375 (881)
..|. |+..++..++. +|.+
T Consensus 69 ~~G~-rs~~aa~~L~~-~G~~ 87 (100)
T cd01523 69 AKEG-SSQFVAELLAE-RGYD 87 (100)
T ss_pred CCCC-cHHHHHHHHHH-cCce
Confidence 9998 88766666644 5653
No 84
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=92.81 E-value=0.13 Score=58.13 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCCCCCC-HHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002791 325 EVRTAPT-MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (881)
Q Consensus 325 ~d~~~ps-~E~v~af~~il~---d~~~~PVLVHCtAGKDRTGaLaaLlr~ 370 (881)
.+...|+ ...+.+|...+. +....|++|||.||.+|||++.|+=+.
T Consensus 261 Pd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 261 PDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred cccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 3444442 344555555443 345789999999999999988877544
No 85
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=92.64 E-value=0.12 Score=59.14 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=66.8
Q ss_pred CHhh-HHHHHHc--CCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCC-CCCHHHHHHHHHHHhc------C
Q 002791 276 TEEG-LKWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN------S 345 (881)
Q Consensus 276 T~eD-L~~Lkel--GIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~-~ps~E~v~af~~il~d------~ 345 (881)
++.+ +..|+++ .+--+|||..-. ..|. ....+..|+.|+.+--.... .|+.+.+..|..+++. .
T Consensus 49 ~~~dl~~~l~~~~~~vgl~iDltnt~---ryy~---~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~ 122 (393)
T KOG2386|consen 49 QPKDLFELLKEHNYKVGLKIDLTNTL---RYYD---KPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKL 122 (393)
T ss_pred CHHHHHHHHHhcCceEEEEEecccee---eeec---cccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccC
Confidence 4444 5666666 556799996643 2332 22356789999998766544 6777788887776542 1
Q ss_pred CCCcEEEeCccCCChHHH-HHHHHHHHcCCCHHHHHHHh
Q 002791 346 SKKPLYLHSKEGVWRTYA-MVSRWRQYMARCASQISGQT 383 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRTGa-LaaLlr~l~Gvs~ddIiaDY 383 (881)
.+.=|++||+.|+.|||- +++++..-.+++..+|++-+
T Consensus 123 ~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f 161 (393)
T KOG2386|consen 123 DDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRF 161 (393)
T ss_pred CCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHH
Confidence 234499999999999994 44444343568888776543
No 86
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=92.49 E-value=0.8 Score=43.00 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=50.0
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCC---------CCCCHHHHHHHHHHHhcCC
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSNSS 346 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~---------~~ps~E~v~af~~il~d~~ 346 (881)
+++++..+...+--.|||.|+.. +... ...+-......|. +++|..+. ..++.+.+.+++.......
T Consensus 3 ~~~~l~~~l~~~~~~ivDvR~~~-~~~~-~~~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 3 SPDWLAEHLDDPDVRILDARWYL-PDRD-GRKEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CHHHHHHHhCCCCeEEEEeecCC-CCCc-hhhHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 55666655544335799999973 1100 0001011122343 55665321 2245566777665543356
Q ss_pred CCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002791 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 347 ~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
+.||+++|..|-.|+..++..+ ..+|.+
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHH-HHcCCC
Confidence 7899999999732544444333 446754
No 87
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=92.43 E-value=0.52 Score=42.95 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=47.2
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002791 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (881)
Q Consensus 274 qpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVH 353 (881)
.++++++..+.+.+=-.|||.|++. | +. .....| -+++|+..... ..+.+.++ .....++||+||
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~-e---~~-----~ghi~g--A~~ip~~~~~~-~~~~~~~~---~~~~~~~~ivvy 67 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDY-E---YD-----IGHFKG--AVNPDVDTFRE-FPFWLDEN---LDLLKGKKVLMY 67 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChh-h---hh-----cCEecc--ccCCCcccHhH-hHHHHHhh---hhhcCCCEEEEE
Confidence 4577788776655445899999864 1 11 011122 35666653110 01112221 112457899999
Q ss_pred CccCCChHHHHHHHHHHHcCCC
Q 002791 354 SKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 354 CtAGKDRTGaLaaLlr~l~Gvs 375 (881)
|.+|. |+...+..++. +|..
T Consensus 68 C~~G~-rs~~a~~~L~~-~G~~ 87 (101)
T cd01518 68 CTGGI-RCEKASAYLKE-RGFK 87 (101)
T ss_pred CCCch-hHHHHHHHHHH-hCCc
Confidence 99998 99866555433 5643
No 88
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.84 E-value=0.23 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.5
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002791 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLaaLl 368 (881)
..+|++|||.+|.||||+++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 35799999999999999777653
No 89
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=90.81 E-value=1 Score=41.73 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=47.2
Q ss_pred CCCCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 002791 273 GQVTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (881)
Q Consensus 273 gqpT~eDL~~LkelG-IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVL 351 (881)
..++.+++..+.+.| --.|||.|+.. + |. .....| -+++|+ ..+...+..+....+.||+
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~-e---~~-----~ghIpg--ainip~--------~~l~~~~~~l~~~~~~~iv 70 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFD-E---YR-----KMTIPG--SVSCPG--------AELVLRVGELAPDPRTPIV 70 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHH-H---Hh-----cCcCCC--ceeCCH--------HHHHHHHHhcCCCCCCeEE
Confidence 356788888776655 24699999865 1 11 011122 244444 2333344433223467999
Q ss_pred EeCccCCChHHHHHHHHHHHcCCC
Q 002791 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 352 VHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
|||.+|. |+...+..++ .+|.+
T Consensus 71 v~C~~G~-rs~~a~~~L~-~~G~~ 92 (109)
T cd01533 71 VNCAGRT-RSIIGAQSLI-NAGLP 92 (109)
T ss_pred EECCCCc-hHHHHHHHHH-HCCCC
Confidence 9999998 8865555443 35653
No 90
>PRK01415 hypothetical protein; Validated
Probab=89.16 E-value=3.4 Score=45.06 Aligned_cols=170 Identities=11% Similarity=0.056 Sum_probs=89.0
Q ss_pred cCCCcccchhhhhhhhhHHHHHHHhccCCCC-cchhhHH-HHHHHHHhhhc-cCCCC---CCCCCCCCcCCCCceeEEec
Q 002791 181 QLPPLAIFRSEMKRCCESMHIALENYLTPED-VRSLDVW-RKLQRLKNVCY-DSGFP---RGDDYPIHTLFANWSPVYLS 254 (881)
Q Consensus 181 ~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~-~~~l~v~-rkLqr~~~~~~-d~g~p---r~~gyp~~~~i~Nw~~V~ls 254 (881)
.+++..-+|..+..+|..+.+..-=|+++++ -.++..- ..+.++.+... |-++. --..+++..+|...+. .+.
T Consensus 15 ~i~~~~~~~~~l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~~~~~~~~k~s~~~~~~F~~l~v-r~k 93 (247)
T PRK01415 15 NIEEPANLIPKLLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLTGPKDVNVKINYSDVHPFQKLKV-RLK 93 (247)
T ss_pred cCCCHHHHHHHHHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCcCCCCceeecccccCCCCCccEE-Eee
Confidence 3455667899999999998888888888887 1111111 11222222111 11221 1223445555655553 211
Q ss_pred C-Cccc-cccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCH
Q 002791 255 N-SKDD-IASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM 332 (881)
Q Consensus 255 ~-~~~~-~~~~~~e~~LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~ 332 (881)
+ +... ..... +..-++..++++++..+.+..=-.|||.|.+. |-. .-...| -+++|+.
T Consensus 94 ~eiV~~g~~~~~--~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~-E~~--------~Ghi~g--Ainip~~------- 153 (247)
T PRK01415 94 KEIVAMNVDDLN--VDLFKGEYIEPKDWDEFITKQDVIVIDTRNDY-EVE--------VGTFKS--AINPNTK------- 153 (247)
T ss_pred ceEEecCCCCCC--ccccCccccCHHHHHHHHhCCCcEEEECCCHH-HHh--------cCCcCC--CCCCChH-------
Confidence 1 0000 00111 12225568899999888776556799999975 110 000111 1334443
Q ss_pred HHHHHHHHH----HhcCCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 333 EQVEKFASL----VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 333 E~v~af~~i----l~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
.+.+|-+. .....++||+++|++|. |+-..+..++. .|.
T Consensus 154 -~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa~~L~~-~Gf 196 (247)
T PRK01415 154 -TFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKSTSLLKS-IGY 196 (247)
T ss_pred -HHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 22222111 11245789999999998 98877766654 453
No 91
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=89.13 E-value=0.31 Score=56.40 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhc-----CCCCcEEEeCccCCChHH
Q 002791 332 MEQVEKFASLVSN-----SSKKPLYLHSKEGVWRTY 362 (881)
Q Consensus 332 ~E~v~af~~il~d-----~~~~PVLVHCtAGKDRTG 362 (881)
+-.+..|++-+.. ...+||.|||+||.+|||
T Consensus 431 Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTG 466 (600)
T KOG0790|consen 431 PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTG 466 (600)
T ss_pred ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcc
Confidence 3445667665531 235799999999999999
No 92
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=88.95 E-value=1.3 Score=40.30 Aligned_cols=85 Identities=25% Similarity=0.226 Sum_probs=45.5
Q ss_pred HhhHHHHHH-cCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCC---CCCCHHHHHHHHHHHhcCCCCcEEE
Q 002791 277 EEGLKWLME-KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---TAPTMEQVEKFASLVSNSSKKPLYL 352 (881)
Q Consensus 277 ~eDL~~Lke-lGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~---~~ps~E~v~af~~il~d~~~~PVLV 352 (881)
.+++..+.+ .+=-+|||.|++. + +. .-...|. +++|+... ..++.+.+.+++.......+.||++
T Consensus 3 ~~~~~~~l~~~~~~~iiDvR~~~-e---~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 71 (106)
T cd01519 3 FEEVKNLPNPHPNKVLIDVREPE-E---LK-----TGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIF 71 (106)
T ss_pred HHHHHHhcCCCCCEEEEECCCHH-H---Hh-----cCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEE
Confidence 455555544 4336799999864 1 11 0112232 55665431 1233444544443332234779999
Q ss_pred eCccCCChHHHHHHHHHHHcCC
Q 002791 353 HSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 353 HCtAGKDRTGaLaaLlr~l~Gv 374 (881)
+|..|. |+..++.++ ..+|.
T Consensus 72 ~c~~g~-~s~~~~~~l-~~~G~ 91 (106)
T cd01519 72 YCKAGV-RSKAAAELA-RSLGY 91 (106)
T ss_pred ECCCcH-HHHHHHHHH-HHcCC
Confidence 999997 776544444 44564
No 93
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=87.40 E-value=1.9 Score=39.12 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=46.0
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcE-EEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcc
Q 002791 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKE 356 (881)
Q Consensus 278 eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~-yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtA 356 (881)
.....+...+--.|||.|++. + +. ..+-.. .+|+|+.+.... ........++|++++|.+
T Consensus 10 ~~~~~~~~~~~~~liDvR~~~-e---~~-------~~~i~~~~~~ip~~~~~~~--------~~~~~~~~~~~ivv~C~~ 70 (110)
T COG0607 10 DEAALLLAGEDAVLLDVREPE-E---YE-------RGHIPGAAINIPLSELKAA--------ENLLELPDDDPIVVYCAS 70 (110)
T ss_pred HHHHHhhccCCCEEEeccChh-H---hh-------hcCCCcceeeeecccchhh--------hcccccCCCCeEEEEeCC
Confidence 334555556778999999974 1 11 111122 788888742211 110002457899999999
Q ss_pred CCChHHHHHHHHHHHcC
Q 002791 357 GVWRTYAMVSRWRQYMA 373 (881)
Q Consensus 357 GKDRTGaLaaLlr~l~G 373 (881)
|. |++..+..++. +|
T Consensus 71 G~-rS~~aa~~L~~-~G 85 (110)
T COG0607 71 GV-RSAAAAAALKL-AG 85 (110)
T ss_pred CC-ChHHHHHHHHH-cC
Confidence 99 99877777655 45
No 94
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=86.11 E-value=3 Score=37.16 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=42.5
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002791 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (881)
Q Consensus 275 pT~eDL~~LkelGI-KTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVH 353 (881)
++++++..+.+.+- -.|||.|+.. + +. .. .....| -+++|.. .+......+ ..+.||+||
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~-e---~~-~~--~~hi~g--a~~ip~~--------~~~~~~~~~--~~~~~ivv~ 62 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPA-S---YA-AL--PDHIPG--AIHLDED--------SLDDWLGDL--DRDRPVVVY 62 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHH-H---Hh-cc--cCCCCC--CeeCCHH--------HHHHHHhhc--CCCCCEEEE
Confidence 45667766554432 4699999864 1 10 00 001112 2333332 344444433 457899999
Q ss_pred CccCCChHHHHHHHHHHHcCC
Q 002791 354 SKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 354 CtAGKDRTGaLaaLlr~l~Gv 374 (881)
|..|. |+..++..++. .|.
T Consensus 63 c~~g~-~s~~a~~~l~~-~G~ 81 (96)
T cd01444 63 CYHGN-SSAQLAQALRE-AGF 81 (96)
T ss_pred eCCCC-hHHHHHHHHHH-cCC
Confidence 99887 77655555543 453
No 95
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.03 E-value=0.43 Score=60.35 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEeCccCCChHHH
Q 002791 332 MEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYA 363 (881)
Q Consensus 332 ~E~v~af~~il~d~---~~~PVLVHCtAGKDRTGa 363 (881)
+..+.+|+.-+..- ..+|++|||.||.||||+
T Consensus 712 ~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~ 746 (1087)
T KOG4228|consen 712 PTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGC 746 (1087)
T ss_pred chHHHHHHHHhccCCCcCCCCEEEECCCCCCCcce
Confidence 34566777666432 358999999999999994
No 96
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=85.66 E-value=4.4 Score=36.51 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=47.5
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCC----CCCCCHHHHHHHHHHHhc--CCCCc
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV----RTAPTMEQVEKFASLVSN--SSKKP 349 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d----~~~ps~E~v~af~~il~d--~~~~P 349 (881)
|++++..+.+.+=-.|||.|+.. + |. .-...|. +|+|... ......+.+..+...... ..+.+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~-~---~~-----~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPE-E---YE-----RGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKD 69 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHH-H---HH-----HSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHH-H---HH-----cCCCCCC--cccccccccccccccccccccccccccccccccccc
Confidence 46677766655778999999864 1 21 1122343 7888732 223334445444443322 45668
Q ss_pred EEEeCccCCChHHHHHHH
Q 002791 350 LYLHSKEGVWRTYAMVSR 367 (881)
Q Consensus 350 VLVHCtAGKDRTGaLaaL 367 (881)
|+|+|..|. |++..+++
T Consensus 70 iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 70 IVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp EEEEESSSC-HHHHHHHH
T ss_pred ceeeeeccc-ccchhHHH
Confidence 999998888 88855555
No 97
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=85.18 E-value=2.8 Score=38.13 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhc-CCCCcE
Q 002791 274 QVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPL 350 (881)
Q Consensus 274 qpT~eDL~~LkelG--IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d-~~~~PV 350 (881)
|++++++..+.+.+ --.|||.|+.. + +. .....|. +++|.. .+..+.+.+.. ..++|+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~-e---~~-----~~hI~ga--~~ip~~--------~~~~~~~~~~~~~~~~~v 61 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPE-E---LE-----IAFLPGF--LHLPMS--------EIPERSKELDSDNPDKDI 61 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHH-H---Hh-----cCcCCCC--EecCHH--------HHHHHHHHhcccCCCCeE
Confidence 56777777666554 34799999864 1 11 1122332 344442 23334444422 247899
Q ss_pred EEeCccCCChHHHHHHHHHHHcCCC
Q 002791 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 351 LVHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
+++|..|. |+-..+..++. .|.+
T Consensus 62 v~~c~~g~-rs~~~~~~l~~-~G~~ 84 (101)
T cd01528 62 VVLCHHGG-RSMQVAQWLLR-QGFE 84 (101)
T ss_pred EEEeCCCc-hHHHHHHHHHH-cCCc
Confidence 99999996 87655555544 5643
No 98
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=84.94 E-value=1.9 Score=40.09 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhh---hHHHHhhCCcEEEEeecCCC-----CCCCHHHHHHHHHHHhcCCC
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAA---IDDAILSGKVELIKIPVEVR-----TAPTMEQVEKFASLVSNSSK 347 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~---e~~~~e~~GI~yIhIPV~d~-----~~ps~E~v~af~~il~d~~~ 347 (881)
+++++..+.+.+=-.|||.|+.. +-...... +...-...| -+++|+... ..+..+.+.+++.-+....+
T Consensus 2 s~~~l~~~l~~~~~~iiDvR~~~-e~~~~~~~~~~~~~~ghIpg--A~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 2 TAEEVLANLDSGDVQLVDARSPE-RFRGEVPEPRPGLRSGHIPG--AVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CHHHHHHhcCCCCcEEEeCCCHH-HcCCcCCCCCCCCcCCcCCC--CcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 45566665544324799999964 11100000 000011122 245555321 12344555555544322457
Q ss_pred CcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002791 348 KPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 348 ~PVLVHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
.||+++|..|. |+..++..+ ..+|.+
T Consensus 79 ~~iv~yc~~g~-~s~~~~~~l-~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSGV-TACVLLLAL-ELLGYK 104 (118)
T ss_pred CCEEEECCcHH-HHHHHHHHH-HHcCCC
Confidence 89999999987 877665554 335654
No 99
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=84.78 E-value=0.76 Score=51.72 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=40.9
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHHc
Q 002791 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~edl~~~L~~Il~ 810 (881)
.++|.+|+||||||+-.|..+. ...+||+||-. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~-~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLA-DKGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHH-hcCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 4689999999999996665544 45799999954 3 6999888655 6667777754
No 100
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=84.54 E-value=4.5 Score=36.50 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=41.9
Q ss_pred CHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002791 276 TEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (881)
Q Consensus 276 T~eDL~~LkelG--IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVH 353 (881)
+++++..+.+.+ --.+||.|+.. + |. .....| -+++|.. .+......+....+.||+++
T Consensus 2 s~~~l~~~~~~~~~~~~liDvR~~~-e---~~-----~ghipg--a~~ip~~--------~l~~~~~~~~~~~~~~iv~~ 62 (95)
T cd01534 2 GAAELARWAAEGDRTVYRFDVRTPE-E---YE-----AGHLPG--FRHTPGG--------QLVQETDHFAPVRGARIVLA 62 (95)
T ss_pred CHHHHHHHHHcCCCCeEEEECCCHH-H---HH-----hCCCCC--cEeCCHH--------HHHHHHHHhcccCCCeEEEE
Confidence 566777666554 34689999864 1 11 111223 2455543 12111122212236789999
Q ss_pred CccCCChHHHHHHHHHHHcCC
Q 002791 354 SKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 354 CtAGKDRTGaLaaLlr~l~Gv 374 (881)
|..|. |+...+..+ ..+|.
T Consensus 63 c~~G~-rs~~aa~~L-~~~G~ 81 (95)
T cd01534 63 DDDGV-RADMTASWL-AQMGW 81 (95)
T ss_pred CCCCC-hHHHHHHHH-HHcCC
Confidence 99998 776544444 44565
No 101
>PRK14071 6-phosphofructokinase; Provisional
Probab=84.47 E-value=0.88 Score=51.89 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=41.6
Q ss_pred CccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHHc
Q 002791 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVIY 810 (881)
Q Consensus 755 ~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~----------G~LGFLt~~~~edl~~~L~~Il~ 810 (881)
++|.+|+||||||+-.+.++.....+||+||-- -++||-|..+. ..+.++++..
T Consensus 107 ~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 107 GLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred CCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 789999999999986655544434899999843 37999998665 6667887764
No 102
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=84.41 E-value=5.9 Score=37.53 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=45.9
Q ss_pred CCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCC--CCHHHHHHHHHHHhcCCCCcEE
Q 002791 275 VTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA--PTMEQVEKFASLVSNSSKKPLY 351 (881)
Q Consensus 275 pT~eDL~~LkelG-IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~--ps~E~v~af~~il~d~~~~PVL 351 (881)
++++++..+.+.+ =-.|||.|+.. + +. . .-...| -+++|...... ++......+...+ ..++||+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~-e---~~-~---~ghIpg--A~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~iv 68 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEA-E---WK-F---VGGVPD--AVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVL 68 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHH-H---Hh-c---ccCCCC--ceecchhhccccccCHHHHHHHHhhC--CCCCeEE
Confidence 3566666665553 35699999865 1 10 0 011122 35566542211 1222222222222 4578999
Q ss_pred EeCccCCChHHHHHHHHHHHcCC
Q 002791 352 LHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 352 VHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
++|..|. |+...+..++. +|.
T Consensus 69 v~C~~G~-rs~~aa~~L~~-~G~ 89 (117)
T cd01522 69 LLCRSGN-RSIAAAEAAAQ-AGF 89 (117)
T ss_pred EEcCCCc-cHHHHHHHHHH-CCC
Confidence 9999997 88866666544 454
No 103
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=83.33 E-value=2.8 Score=43.08 Aligned_cols=75 Identities=9% Similarity=0.167 Sum_probs=46.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch---H
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG---V 767 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDG---T 767 (881)
++|+||-+.+... ..+.++|.+ .|+++.+-.... .+.+++ +.+|.||+.||-| .
T Consensus 2 ~~iliid~~dsf~----~~i~~~l~~-~g~~~~v~~~~~-----------------~~~~~l-~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFT----FNLVDLIRK-LGVPMQVVNVED-----------------LDLDEV-ENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchH----HHHHHHHHH-cCCcEEEEECCc-----------------cChhHh-ccCCEEEECCCCCChHH
Confidence 5889998887642 236777766 577665422100 011122 3579999999998 2
Q ss_pred ---HHHHHHhcCCCCCcEEEEeCCC
Q 002791 768 ---ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 768 ---~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
++...+.+ ...+|||||-+|+
T Consensus 59 ~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 59 YPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 23333332 3589999999985
No 104
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=83.01 E-value=4.6 Score=38.81 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=47.0
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCC----------CC------------H
Q 002791 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA----------PT------------M 332 (881)
Q Consensus 275 pT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~----------ps------------~ 332 (881)
++++++..+.+.++ .|||.|++. + |. .-...|. +++|+..... .. .
T Consensus 1 ~s~~el~~~l~~~~-~iiDvR~~~-e---~~-----~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRKADG-PLIDVRSPK-E---FF-----EGHLPGA--INLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHhcCC-EEEECCCHH-H---hc-----cCcCCCc--EEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 35667776665554 799999865 1 11 0112333 5677752210 00 1
Q ss_pred HHHHHHHHHHh---cCCCCcEEEeCc-cCCChHHHHHHHHHHHcCC
Q 002791 333 EQVEKFASLVS---NSSKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 333 E~v~af~~il~---d~~~~PVLVHCt-AGKDRTGaLaaLlr~l~Gv 374 (881)
+.++++.+.+. -..+.||+++|. +|. |+..++.++ ..+|.
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~-rs~~a~~~L-~~~G~ 112 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGM-RSQSLAWLL-ESLGI 112 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCc-cHHHHHHHH-HHcCC
Confidence 22334444331 245779999997 566 888666554 44675
No 105
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.55 E-value=1.6 Score=52.22 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=21.1
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002791 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (881)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGaLaaLlr~ 370 (881)
+....||||||+-|.|||.=++++...
T Consensus 371 e~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 371 ESESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred hcCCceEEEEcCCCccchHHHHHHHHH
Confidence 356789999999999999955555433
No 106
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=80.39 E-value=3.7 Score=47.06 Aligned_cols=85 Identities=13% Similarity=0.186 Sum_probs=47.7
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCC-cEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002791 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (881)
Q Consensus 274 qpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~G-I~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLV 352 (881)
.++.+++..+.+.+=-.|||.|++. | +. .....| ...+|+|+...... . .+...+....+.||+|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~-E---~~-----~ghI~~~~gAinIPl~~l~~~-~----~~~~~l~~~~~~~Ivv 337 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPH-E---VL-----LKDLPEGGASLKLPLSAITDD-A----DILHALSPIDGDNVVV 337 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHH-H---hh-----hccCCCCCccEeCcHHHhhcc-h----hhhhhccccCCCcEEE
Confidence 4677777776555433799999975 1 11 011111 24678887532110 0 1122222222349999
Q ss_pred eCccCCChHHHHHHHHHHHcCC
Q 002791 353 HSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 353 HCtAGKDRTGaLaaLlr~l~Gv 374 (881)
||.+|. |+...+..++. +|.
T Consensus 338 ~C~sG~-RS~~Aa~~L~~-~G~ 357 (370)
T PRK05600 338 YCASGI-RSADFIEKYSH-LGH 357 (370)
T ss_pred ECCCCh-hHHHHHHHHHH-cCC
Confidence 999998 98876665544 454
No 107
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=80.20 E-value=2.2 Score=48.59 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.9
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHH
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY 371 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l 371 (881)
..+.+|||||..|.|||..+.+|.+.+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHHH
Confidence 467799999999999999988888663
No 108
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=79.88 E-value=5.3 Score=39.88 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=49.2
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCC-cEEEEeecCCCCCCCHHHHHHHHHHHh---cCCCCcEE
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVS---NSSKKPLY 351 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~G-I~yIhIPV~d~~~ps~E~v~af~~il~---d~~~~PVL 351 (881)
+-++...|.+.|=+..||.|.++ |- +..+ -.-|+||+......-...=.+|.+.+. -..++.|+
T Consensus 26 ~~~qvk~L~~~~~~~llDVRepe-Ef-----------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 26 SVEQVKNLLQHPDVVLLDVREPE-EF-----------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred EHHHHHHHhcCCCEEEEeecCHH-Hh-----------hccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 45667778777879999999976 21 1111 356888885332211111124555442 23455899
Q ss_pred EeCccCCChHHHHHHHHH
Q 002791 352 LHSKEGVWRTYAMVSRWR 369 (881)
Q Consensus 352 VHCtAGKDRTGaLaaLlr 369 (881)
|||.+|+ |.....-++.
T Consensus 94 f~C~SG~-Rs~~A~~~l~ 110 (136)
T KOG1530|consen 94 FGCASGV-RSLKATKILV 110 (136)
T ss_pred EEeccCc-chhHHHHHHH
Confidence 9999999 8885554443
No 109
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=79.84 E-value=5.8 Score=36.63 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002791 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (881)
Q Consensus 274 qpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVH 353 (881)
.++++++..+.+.+=-.|||+|+.. + +. .-...| -+++|. ..+..++..+ ..+.|++|+
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~-e---~~-----~ghi~g--A~~ip~--------~~l~~~~~~~--~~~~~ivv~ 64 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQ-S---FA-----MGHAPG--AFHLTN--------DSLGAFMRQA--DFDTPVMVM 64 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHH-H---Hh-----cCCCCC--CeECCH--------HHHHHHHHhc--CCCCCEEEE
Confidence 3567777665544335799999864 1 11 011122 233443 3455555544 357799999
Q ss_pred CccCCChHHHHHHHHHHHcCC
Q 002791 354 SKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 354 CtAGKDRTGaLaaLlr~l~Gv 374 (881)
|..|. |+...+..++ ..|.
T Consensus 65 c~~g~-~s~~a~~~L~-~~G~ 83 (108)
T PRK00162 65 CYHGN-SSQGAAQYLL-QQGF 83 (108)
T ss_pred eCCCC-CHHHHHHHHH-HCCc
Confidence 99998 7654444433 3454
No 110
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=79.83 E-value=1.5 Score=48.90 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=40.9
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHH
Q 002791 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~edl~~~L~~Il 809 (881)
.++|.+|+||||||+=.|..+....++||+||-. | ++||-|..+ .+.++++++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~--~~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALN--TIIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHH--HHHHHHHHHH
Confidence 3789999999999998777765546899999954 3 788888643 3455666664
No 111
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=79.36 E-value=2.2 Score=38.58 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=43.4
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002791 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (881)
Q Consensus 274 qpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVH 353 (881)
.++++++..+.+.+ -.|||+|+.+ + +. .-...| .+++|..... .....+ ..++||+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~-e---~~-----~~hi~g--a~~ip~~~~~--------~~~~~~--~~~~~iv~~ 60 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPD-E---YL-----RERIPG--ARLVPLSQLE--------SEGLPL--VGANAIIFH 60 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHH-H---HH-----hCcCCC--CEECChhHhc--------ccccCC--CCCCcEEEE
Confidence 45778887776667 6899999865 1 11 011223 2455554211 111112 456799999
Q ss_pred CccCCChHHHHHHHHHH
Q 002791 354 SKEGVWRTYAMVSRWRQ 370 (881)
Q Consensus 354 CtAGKDRTGaLaaLlr~ 370 (881)
|..|. |+..++..++.
T Consensus 61 c~~g~-~s~~~~~~L~~ 76 (99)
T cd01527 61 CRSGM-RTQQNAERLAA 76 (99)
T ss_pred eCCCc-hHHHHHHHHHH
Confidence 99998 77765555543
No 112
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=79.23 E-value=5.8 Score=35.40 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=42.7
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCt 355 (881)
+++++..+.+.++ .|||+|+.+ + |. .-...| .+++|+. .+...+..+ ..++|++++|.
T Consensus 2 ~~~e~~~~~~~~~-~iiD~R~~~-~---~~-----~~hipg--A~~ip~~--------~~~~~~~~~--~~~~~vvl~c~ 59 (90)
T cd01524 2 QWHELDNYRADGV-TLIDVRTPQ-E---FE-----KGHIKG--AINIPLD--------ELRDRLNEL--PKDKEIIVYCA 59 (90)
T ss_pred CHHHHHHHhcCCC-EEEECCCHH-H---Hh-----cCCCCC--CEeCCHH--------HHHHHHHhc--CCCCcEEEEcC
Confidence 5677777776565 599999864 1 11 001122 2444532 343333333 34679999999
Q ss_pred cCCChHHHHHHHHHHHcCC
Q 002791 356 EGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 356 AGKDRTGaLaaLlr~l~Gv 374 (881)
.|. |....+..++ ..|.
T Consensus 60 ~g~-~a~~~a~~L~-~~G~ 76 (90)
T cd01524 60 VGL-RGYIAARILT-QNGF 76 (90)
T ss_pred CCh-hHHHHHHHHH-HCCC
Confidence 987 6665554443 3554
No 113
>PRK06186 hypothetical protein; Validated
Probab=79.18 E-value=4.2 Score=43.89 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002791 754 ERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 754 ~~~DlVIvLGGDGT-----~L~Aar~~~~~~~PVLGIN~G 788 (881)
..+|-|++.||=|. .+.|++.....++|+|||-+|
T Consensus 52 ~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 52 AGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred hhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 46899999999764 577888888899999999998
No 114
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=79.14 E-value=1.8 Score=50.29 Aligned_cols=55 Identities=27% Similarity=0.320 Sum_probs=41.3
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHHc
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVIY 810 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~edl~~~L~~Il~ 810 (881)
.++|.+|+||||||+-.|.++.. +.++||+||-- =++||-|..+ .+.++++++..
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~--~~~~ai~~l~~ 180 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVIN 180 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH--HHHHHHHHHHH
Confidence 37899999999999988877643 35899999943 2688888643 45666777754
No 115
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=78.34 E-value=6.9 Score=37.12 Aligned_cols=86 Identities=17% Similarity=0.351 Sum_probs=45.9
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHH--HHHHHhcCCCCcE
Q 002791 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEK--FASLVSNSSKKPL 350 (881)
Q Consensus 274 qpT~eDL~~LkelGI-KTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~a--f~~il~d~~~~PV 350 (881)
.++++++..+.+.+- -.|||+|+.. + +. .....| .+++|....... ...+.. +.... ...++|+
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~-e---~~-----~~hIpg--ai~ip~~~~~~~-~~~~~~~~~~~~~-~~~~~~i 75 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKV-H---FE-----ICRLPE--AINIPLSELLSK-AAELKSLQELPLD-NDKDSPI 75 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHH-H---hh-----cccCCC--CeEccHHHHhhh-hhhhhhhhhcccc-cCCCCcE
Confidence 567888887776633 3599999875 1 11 011223 345665421110 000100 11111 2457899
Q ss_pred EEeCccCCChHHHHHHHHHHHcCC
Q 002791 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 351 LVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
+++|.+|. |+...+..++. .|.
T Consensus 76 vv~C~~G~-rs~~aa~~L~~-~G~ 97 (122)
T cd01526 76 YVVCRRGN-DSQTAVRKLKE-LGL 97 (122)
T ss_pred EEECCCCC-cHHHHHHHHHH-cCC
Confidence 99999997 87755554433 465
No 116
>CHL00101 trpG anthranilate synthase component 2
Probab=77.75 E-value=4.3 Score=41.84 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=45.3
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHHH-
Q 002791 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (881)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~L~- 770 (881)
|+||-..+.- ...|+++|.+ .|+++.+.+... .+..++ ...+|.||+.||.|..-.
T Consensus 2 iliid~~dsf----t~~l~~~l~~-~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiiisgGpg~~~~~ 59 (190)
T CHL00101 2 ILIIDNYDSF----TYNLVQSLGE-LNSDVLVCRNDE-----------------IDLSKIKNLNIRHIIISPGPGHPRDS 59 (190)
T ss_pred EEEEECCCch----HHHHHHHHHh-cCCCEEEEECCC-----------------CCHHHHhhCCCCEEEECCCCCChHHC
Confidence 6677666542 3446677766 577776533210 001111 235899999999998633
Q ss_pred ----HHHhcCCCCCcEEEEeCCC
Q 002791 771 ----ASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 771 ----Aar~~~~~~~PVLGIN~G~ 789 (881)
.........+|||||-+|+
T Consensus 60 ~~~~~i~~~~~~~~PiLGIClG~ 82 (190)
T CHL00101 60 GISLDVISSYAPYIPILGVCLGH 82 (190)
T ss_pred cchHHHHHHhcCCCcEEEEchhH
Confidence 2222224689999999984
No 117
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=77.56 E-value=2 Score=50.56 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=71.6
Q ss_pred hcccccCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCC-eEEEEccchhh-h---------------hhcCCCCcccee
Q 002791 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPDVHD-I---------------FARIPGFGFVQT 743 (881)
Q Consensus 683 ~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~G-veV~vE~~~~~-~---------------l~~~p~~~~v~~ 743 (881)
.+-++....+|+||.--++ + .-...+.++..+...++ .+|+--..=.+ . +...++. ...+
T Consensus 80 ~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGT 158 (459)
T PTZ00286 80 HLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGT-ILGS 158 (459)
T ss_pred eEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCc-eecc
Confidence 4556667789999998886 4 44455677777754334 45554332111 1 1111110 0000
Q ss_pred e-eccCcccc-----CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHH
Q 002791 744 F-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYR 802 (881)
Q Consensus 744 f-~~~~~~dl-----~~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~edl~ 802 (881)
- ...+...+ ..++|.+|+||||||+-.|..+.. +..+||+||-- =++||-|.++ ...
T Consensus 159 SR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~--~~~ 236 (459)
T PTZ00286 159 SRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE--EAQ 236 (459)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH--HHH
Confidence 0 00011111 247899999999999988877654 35699999943 3788888743 455
Q ss_pred HHHHHHH
Q 002791 803 QDLRQVI 809 (881)
Q Consensus 803 ~~L~~Il 809 (881)
++++.+.
T Consensus 237 ~aI~~~~ 243 (459)
T PTZ00286 237 NAIRAAY 243 (459)
T ss_pred HHHHHHH
Confidence 5666654
No 118
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=77.55 E-value=5.2 Score=42.29 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=48.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH--
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-- 769 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L-- 769 (881)
+|+|+-..+ .....+.+||.+ .|+++.+.+.....+ .+..+....+|.+|..||.|..-
T Consensus 2 ~ilv~d~~~----~~~~~~~~~l~~-~G~~~~~~~~~~~~~--------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYD----SFVFNLVQYLGQ-LGVEAEVWRNDDPRL--------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCC----cHHHHHHHHHHH-cCCcEEEEECCCcCH--------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 577777664 223357788876 688776533211000 00112234689999999997653
Q ss_pred ----HHHHhcCCCCCcEEEEeCCC
Q 002791 770 ----HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 770 ----~Aar~~~~~~~PVLGIN~G~ 789 (881)
..++.+....+|||||-+|+
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCH
Confidence 33344445689999999984
No 119
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=77.40 E-value=2.2 Score=47.91 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=39.3
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHH
Q 002791 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~edl~~~L~~Il 809 (881)
.++|.+|+||||||+-.|.++.. .++||+||-. | ++||-|..+. +.+.++.+.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~e-~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~--~~~~i~~i~ 153 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLTE-HGFPCVGLPGTIDNDIPGTDYTIGFDTALNT--VVEAIDRIR 153 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHHH-cCCCEEEecccccCCCCCCccCCCHHHHHHH--HHHHHHHHH
Confidence 47899999999999877766544 5799999943 3 7999887543 445566654
No 120
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=77.20 E-value=4.1 Score=42.01 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=45.5
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHHH-
Q 002791 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (881)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~L~- 770 (881)
|+||-+.+. ....++++|.+ .|.++.+.+.....+ +++ ...+|.||..||-|..-.
T Consensus 2 il~id~~ds----ft~~~~~~l~~-~g~~v~v~~~~~~~~-----------------~~~~~~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 2 VLMIDNYDS----FTYNLVQYFCE-LGAEVVVKRNDSLTL-----------------QEIEALLPLLIVISPGPCTPNEA 59 (188)
T ss_pred EEEEECCcC----HHHHHHHHHHH-cCCceEEEECCCCCH-----------------HHHHhcCCCEEEEcCCCCChhhc
Confidence 677776654 24456777766 477766544211000 111 124788999999988633
Q ss_pred -----HHHhcCCCCCcEEEEeCCC
Q 002791 771 -----ASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 771 -----Aar~~~~~~~PVLGIN~G~ 789 (881)
..+.+ ...+|||||-+|+
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHHH
Confidence 34444 4589999999984
No 121
>PRK14072 6-phosphofructokinase; Provisional
Probab=76.76 E-value=2.2 Score=49.73 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=38.7
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHHHHHHHH
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~edl~~~L~~I 808 (881)
.++|.+|+||||||+=.|.++.. +.++||+||-- -++||-|..+ -+.++++++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~--~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK--YIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH--HHHHHHHHH
Confidence 36899999999999988776543 45699999953 4688877643 344555555
No 122
>PRK05320 rhodanese superfamily protein; Provisional
Probab=76.55 E-value=6.1 Score=43.14 Aligned_cols=173 Identities=14% Similarity=0.119 Sum_probs=82.9
Q ss_pred CCCcccchhhhhhhhhHHHHHHHhccCCCC-cchhhH-HHHHHHHHhhhccCCCCCCCCCCCCcC---CCCceeEEecCC
Q 002791 182 LPPLAIFRSEMKRCCESMHIALENYLTPED-VRSLDV-WRKLQRLKNVCYDSGFPRGDDYPIHTL---FANWSPVYLSNS 256 (881)
Q Consensus 182 ~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~-~~~l~v-~rkLqr~~~~~~d~g~pr~~gyp~~~~---i~Nw~~V~ls~~ 256 (881)
+++..-.|..+..+|..+.+..-=|+++++ -.++.. ..++..+...... .|+.++...-.. -+-|...... .
T Consensus 14 i~~~~~~~~~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~--~~~~~dl~~k~~~~~~~pF~~l~vk-~ 90 (257)
T PRK05320 14 LDDPETLRPLVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA--DARFADLQVKESLSDSQPFRRMLVK-L 90 (257)
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh--CCCccCceeecccccCCCchhccch-h
Confidence 445566788888888888777777888886 111111 2233333322211 233333222101 1123221000 0
Q ss_pred ccccc---cCCCcccEEEcCCCCHhhHHHHHHcCC------cEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCC
Q 002791 257 KDDIA---SKDSEVTFCRGGQVTEEGLKWLMEKGY------KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR 327 (881)
Q Consensus 257 ~~~~~---~~~~e~~LyRSgqpT~eDL~~LkelGI------KTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~ 327 (881)
++.+. ....++..-++..++++++..+.+.+- -.|||.|+.. |-. .-...| .+++|+...
T Consensus 91 k~eiv~~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~-E~~--------~Ghi~G--AiniPl~~f 159 (257)
T PRK05320 91 KREIITMKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF-EVD--------VGTFDG--ALDYRIDKF 159 (257)
T ss_pred hhHHhhcCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH-HHc--------cCccCC--CEeCChhHh
Confidence 00000 000011111334678888877765542 3699999975 110 011122 366676421
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 328 TAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 328 ~~ps~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
.. .++.+..... ...++||+++|+.|. |+-..+..++. .|.
T Consensus 160 ~~-~~~~l~~~~~---~~kdk~IvvyC~~G~-Rs~~Aa~~L~~-~Gf 200 (257)
T PRK05320 160 TE-FPEALAAHRA---DLAGKTVVSFCTGGI-RCEKAAIHMQE-VGI 200 (257)
T ss_pred hh-hHHHHHhhhh---hcCCCeEEEECCCCH-HHHHHHHHHHH-cCC
Confidence 11 1111221111 124789999999998 98877766654 453
No 123
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=75.66 E-value=8.4 Score=36.93 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.4
Q ss_pred CCCCcEEEeCc-cCCChHHHHHHHHHH
Q 002791 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQ 370 (881)
Q Consensus 345 ~~~~PVLVHCt-AGKDRTGaLaaLlr~ 370 (881)
..+.+|++||. +|. |+..++..++.
T Consensus 66 ~~~~~vv~yC~~sg~-rs~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSK-RGPRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccc-cHHHHHHHHHH
Confidence 35789999997 887 98877776654
No 124
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=75.60 E-value=2.5 Score=49.68 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=72.8
Q ss_pred hcccccCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCC-eEEEEccc-hhhhhh------------------cCCCCcc
Q 002791 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPD-VHDIFA------------------RIPGFGF 740 (881)
Q Consensus 683 ~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~G-veV~vE~~-~~~~l~------------------~~p~~~~ 740 (881)
.+-++....+|+|+.--++ + .-...+.++..+...+| .+|+--.. ....+. ..++. .
T Consensus 73 ~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGT-i 151 (443)
T PRK06830 73 KIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGT-I 151 (443)
T ss_pred eeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCc-c
Confidence 4556777789999998886 4 44556777777655445 56664333 111111 01110 0
Q ss_pred ceee-eccCcccc-----CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcc
Q 002791 741 VQTF-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFE 799 (881)
Q Consensus 741 v~~f-~~~~~~dl-----~~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~e 799 (881)
..+- ..++.+.+ ..++|.+|+||||||+-.|.++.. +..+||+||-- =++||-|.++
T Consensus 152 LGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~-- 229 (443)
T PRK06830 152 LGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE-- 229 (443)
T ss_pred ccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH--
Confidence 0000 00011111 247899999999999988776543 35699999953 3788888643
Q ss_pred cHHHHHHHHH
Q 002791 800 DYRQDLRQVI 809 (881)
Q Consensus 800 dl~~~L~~Il 809 (881)
...++++.+.
T Consensus 230 ~a~~aI~~~~ 239 (443)
T PRK06830 230 KATEAIRCAH 239 (443)
T ss_pred HHHHHHHHHH
Confidence 3455666554
No 125
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=75.34 E-value=6.2 Score=45.72 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=44.7
Q ss_pred cCCCccEEEEEcCchHHHHHHHh-cC--CCCCcEEEEeCCCc-----ccccC-C-Cccc---HHHHHHHHHcCCCCCCcc
Q 002791 752 LHERVDFVACLGGDGVILHASNL-FR--GAVPPVISFNLGSL-----GFLTS-H-PFED---YRQDLRQVIYGNNTLDGV 818 (881)
Q Consensus 752 l~~~~DlVIvLGGDGT~L~Aar~-~~--~~~~PVLGIN~G~L-----GFLt~-~-~~ed---l~~~L~~Il~G~y~~~G~ 818 (881)
+....|+|+|.|||||+=..+-- |+ ....||-=+-.|.. --|.. | +.++ +-++...+++++
T Consensus 113 ~~t~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde------ 186 (535)
T KOG4435|consen 113 VDTQEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDE------ 186 (535)
T ss_pred hccCCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhccc------
Confidence 34455999999999998776653 22 23445432233322 12222 1 2223 334555566665
Q ss_pred eeEEeeEEEEEEEeCCeecCCCcceeEeEEE
Q 002791 819 YITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (881)
Q Consensus 819 ~Ie~R~rL~v~v~r~Gk~~~~~~~~ALNEVV 849 (881)
..+.+.-.+...|... ...++||++.
T Consensus 187 ---~ksv~~fdv~~~gs~l--~P~fgl~gls 212 (535)
T KOG4435|consen 187 ---KKSVYAFDVTTEGSTL--APEFGLGGLS 212 (535)
T ss_pred ---ccceEEEEeccCCCcc--ccccccCccc
Confidence 1233333343445444 2457888765
No 126
>PLN02564 6-phosphofructokinase
Probab=74.19 E-value=2.8 Score=49.67 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=70.4
Q ss_pred hcccccCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCC-eEEEEccchhh-h---------------hhcCCCCcccee
Q 002791 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPDVHD-I---------------FARIPGFGFVQT 743 (881)
Q Consensus 683 ~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~G-veV~vE~~~~~-~---------------l~~~p~~~~v~~ 743 (881)
.+-++....+|+|+.--++ + .-...+.++..+...+| .+|+--..=.+ . +...++. ...+
T Consensus 80 ~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGT 158 (484)
T PLN02564 80 KVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGT-ILGT 158 (484)
T ss_pred eEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCc-eecc
Confidence 4556777889999998886 3 44555666666654334 46654332111 1 0001110 0000
Q ss_pred e-eccCcccc-----CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHH
Q 002791 744 F-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYR 802 (881)
Q Consensus 744 f-~~~~~~dl-----~~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~edl~ 802 (881)
- ...+...+ ..++|.+|+||||||+-.|..+.. +..++|+||-- =++||-|.+ +.+.
T Consensus 159 sR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv--~~~~ 236 (484)
T PLN02564 159 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQ 236 (484)
T ss_pred CCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHH--HHHH
Confidence 0 00011111 237899999999999988877654 34566999853 268888764 3455
Q ss_pred HHHHHHH
Q 002791 803 QDLRQVI 809 (881)
Q Consensus 803 ~~L~~Il 809 (881)
++|+++.
T Consensus 237 ~aI~~i~ 243 (484)
T PLN02564 237 RAINAAH 243 (484)
T ss_pred HHHHHHH
Confidence 6666664
No 127
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=73.72 E-value=6.1 Score=40.20 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=26.2
Q ss_pred CCccEEEEEcCchHHH-----HHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L-----~Aar~~~~~~~PVLGIN~G~ 789 (881)
..+|.||+.||.|+.. ..........+|||||-+|.
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhH
Confidence 4689999999999843 33333334579999999983
No 128
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=73.65 E-value=5 Score=41.22 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=45.7
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH---
Q 002791 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (881)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~--- 768 (881)
|+||-+.+. .+..|+++|.+ .|.+|.+-+... .+.+++ ...+|.||..||.|..
T Consensus 2 il~id~~ds----f~~nl~~~l~~-~~~~~~v~~~~~-----------------~~~~~~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 2 LLLIDNYDS----FTYNLYQYFCE-LGTEVMVKRNDE-----------------LQLTDIEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred EEEEECCCc----hHHHHHHHHHH-CCCcEEEEeCCC-----------------CCHHHHHhcCCCeEEEcCCCCChHhC
Confidence 677777664 24557777765 577766543210 001112 1257999999999984
Q ss_pred ---HHHHHhcCCCCCcEEEEeCCC
Q 002791 769 ---LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 ---L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+...+.+ ...+|||||-+|+
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 60 GISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred CCchHHHHHh-cCCCCEEEECHHH
Confidence 3334444 3589999998874
No 129
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=71.58 E-value=7.2 Score=44.39 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=52.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||....-.....+.++.+.|.+ .|+++.+-..+. ..|....+... ...+ ..++|+||.||| |++
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 92 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKK-EGIESAIFDDVV----SEPTDESVEEG----VKLAKEGGCDVIIALGG-GSP 92 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHH-CCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986543223356788889976 577765432211 11111100000 0011 347899999999 888
Q ss_pred HHHHHhcC-------------------CCCCcEEEEeC
Q 002791 769 LHASNLFR-------------------GAVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGIN~ 787 (881)
+-+++.+. ...+|++.|.+
T Consensus 93 ~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 93 IDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 88887653 24678988876
No 130
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=71.51 E-value=3.5 Score=47.07 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCCeEEEEccchhh-hhhc---------------CCCCc----cceeeec
Q 002791 689 TPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVHD-IFAR---------------IPGFG----FVQTFYL 746 (881)
Q Consensus 689 ~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~GveV~vE~~~~~-~l~~---------------~p~~~----~v~~f~~ 746 (881)
++++|+|+.--++ + .-...+-+++.+.. .|++|+--.+-.. .+.. ..++. ....|..
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIK-EGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHH-cCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 3679999999887 4 44556788888876 4898885433211 1100 00000 0000110
Q ss_pred cCc-----ccc-CCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHH
Q 002791 747 QDT-----SDL-HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (881)
Q Consensus 747 ~~~-----~dl-~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~----------G~LGFLt~~~~edl~~~L~~Il 809 (881)
.+. ..+ ...+|.+|+||||||.-.|..+.....+|++||-- =++||.|..+. +.++|+++-
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~--~~eaid~l~ 156 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALET--AVEAIDNLR 156 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHH--HHHHHHHHH
Confidence 000 001 24689999999999998888777655699999843 37999987543 455565554
No 131
>PLN02884 6-phosphofructokinase
Probab=70.36 E-value=3.3 Score=48.27 Aligned_cols=124 Identities=16% Similarity=0.223 Sum_probs=74.3
Q ss_pred hhcccccCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCCe-EEEEccc-hhhhhhc-----------------CCCCcc
Q 002791 682 QMLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKM-NILVEPD-VHDIFAR-----------------IPGFGF 740 (881)
Q Consensus 682 ~~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~Gv-eV~vE~~-~~~~l~~-----------------~p~~~~ 740 (881)
+.+-|+....+|+|+.--++ + .-...+.++.++.. .|+ +|+--.+ +...+.. .++. .
T Consensus 45 ~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~ 122 (411)
T PLN02884 45 KKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGS-L 122 (411)
T ss_pred eeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCc-e
Confidence 35667778889999999887 4 55556778888765 577 6774322 1111110 0110 0
Q ss_pred ceee-eccCccc----c-CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcc
Q 002791 741 VQTF-YLQDTSD----L-HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFE 799 (881)
Q Consensus 741 v~~f-~~~~~~d----l-~~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~e 799 (881)
..+- ....... + ..++|.+|+||||||+-.|.++.. +..+||+||-- -++||-|..+
T Consensus 123 LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~-- 200 (411)
T PLN02884 123 LGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE-- 200 (411)
T ss_pred eccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH--
Confidence 0000 0000111 1 247899999999999987766543 24699999943 3689988744
Q ss_pred cHHHHHHHHH
Q 002791 800 DYRQDLRQVI 809 (881)
Q Consensus 800 dl~~~L~~Il 809 (881)
.+.++++++.
T Consensus 201 ~~~~ai~~l~ 210 (411)
T PLN02884 201 EAQRAINSAY 210 (411)
T ss_pred HHHHHHHHHH
Confidence 4566676664
No 132
>PRK03202 6-phosphofructokinase; Provisional
Probab=69.97 E-value=4.3 Score=45.74 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=40.0
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHH
Q 002791 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~edl~~~L~~Il 809 (881)
.++|.+|+||||||+-.+.++.. ..+||+||-. | ++||-|..+ .+.+.++++.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~e-~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~--~~~~~i~~l~ 154 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLTE-HGIPVIGLPGTIDNDIAGTDYTIGFDTALN--TAVEAIDRLR 154 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHHh-cCCcEEEecccccCCCCCCccCcCHHHHHH--HHHHHHHHHH
Confidence 47899999999999988777653 6899999954 3 788888643 3555666664
No 133
>PRK05670 anthranilate synthase component II; Provisional
Probab=69.69 E-value=8.9 Score=39.36 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=44.7
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH---
Q 002791 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL--- 769 (881)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L--- 769 (881)
|+||-..+ +.+..+.+||.+ .|+++.+-+...... .+... .++|.||..||-|+.-
T Consensus 2 iliid~~d----~f~~~i~~~l~~-~g~~~~v~~~~~~~~--------------~~~~~--~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 2 ILLIDNYD----SFTYNLVQYLGE-LGAEVVVYRNDEITL--------------EEIEA--LNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred EEEEECCC----chHHHHHHHHHH-CCCcEEEEECCCCCH--------------HHHHh--CCCCEEEEcCCCCChHHcc
Confidence 56666554 335667888876 588776543211000 00111 2379999999998862
Q ss_pred ---HHHHhcCCCCCcEEEEeCCC
Q 002791 770 ---HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 770 ---~Aar~~~~~~~PVLGIN~G~ 789 (881)
...+.+ ...+|||||-+|+
T Consensus 61 ~~~~~l~~~-~~~~PvLGIClG~ 82 (189)
T PRK05670 61 ISLELIREF-AGKVPILGVCLGH 82 (189)
T ss_pred hHHHHHHHh-cCCCCEEEECHHH
Confidence 223333 2469999999984
No 134
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=69.60 E-value=10 Score=42.67 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=48.4
Q ss_pred EcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHH----HHhcCC
Q 002791 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSS 346 (881)
Q Consensus 271 RSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~----il~d~~ 346 (881)
++..++++++..+.+.+=-+|||.|.+. | +. .-...| -+++|+.. +..|.. .+....
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~-E---~~-----~GhI~G--Ai~ip~~~--------~~~~~~~l~~~~~~~k 170 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDY-E---YE-----IGHFEN--AIEPDIET--------FREFPPWVEENLDPLK 170 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHH-H---Hh-----cCcCCC--CEeCCHHH--------hhhhHHHHHHhcCCCC
Confidence 3446788888776554435799999864 1 10 111123 35555542 222222 222235
Q ss_pred CCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 347 KKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 347 ~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
++||++||++|. |....+.+++. .|.
T Consensus 171 dk~IvvyC~~G~-Rs~~aa~~L~~-~Gf 196 (314)
T PRK00142 171 DKKVVMYCTGGI-RCEKASAWMKH-EGF 196 (314)
T ss_pred cCeEEEECCCCc-HHHHHHHHHHH-cCC
Confidence 689999999999 99876666544 453
No 135
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=69.14 E-value=2.1 Score=47.32 Aligned_cols=117 Identities=18% Similarity=0.272 Sum_probs=67.1
Q ss_pred cEEEEEecCCh-h-HHHHHHHHHHHHhcCCCeEEEEccchhh-hh---------------hcCCCC----ccceeeeccC
Q 002791 691 RTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVHD-IF---------------ARIPGF----GFVQTFYLQD 748 (881)
Q Consensus 691 kkVlIV~K~~~-e-a~e~a~eL~~~L~~~~GveV~vE~~~~~-~l---------------~~~p~~----~~v~~f~~~~ 748 (881)
|||+|+.--++ + .-..+..++++... +|++|+--.+=.+ .+ ...++. .....+....
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~-~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~~ 79 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR-RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDPE 79 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH-TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSHH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh-cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccchh
Confidence 68999998876 3 44556778887765 6888886433111 11 011111 0000010000
Q ss_pred -c----ccc-CCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHHc
Q 002791 749 -T----SDL-HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (881)
Q Consensus 749 -~----~dl-~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~edl~~~L~~Il~ 810 (881)
. +.+ ..++|.+|+||||||+-.|..+.....+||+||-. | ++||-|..+ .+.+.++.+..
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~--~~~~~i~~i~~ 155 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVN--YIAEAIDNIKT 155 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHH--HHHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhH--HHHHHHHHHHH
Confidence 0 001 24789999999999976665554345699999953 3 688888744 35566666653
No 136
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=69.00 E-value=8.5 Score=34.67 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=20.2
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
..+.+|+++|..|. |+..++..+ ...|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHH-HHcCCC
Confidence 45679999999887 887665554 335643
No 137
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=68.53 E-value=19 Score=41.08 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=20.1
Q ss_pred CCCcEEEeCc-cCCChHHHHHHHHHHHcCC
Q 002791 346 SKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 346 ~~~PVLVHCt-AGKDRTGaLaaLlr~l~Gv 374 (881)
.+.+|+++|. .|. |++.++.++.. +|.
T Consensus 87 ~~~~ivvyC~rgG~-RS~~aa~~L~~-~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGL-RSGSVQQWLKE-AGI 114 (345)
T ss_pred CCCeEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 5679999996 566 99987766654 575
No 138
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=67.82 E-value=8 Score=36.57 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=36.3
Q ss_pred CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHH
Q 002791 288 YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSR 367 (881)
Q Consensus 288 IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaL 367 (881)
=++|||.|+++ + +. .-...| -+++|+. ++...++.+....+.|++++|..|. |+...+..
T Consensus 20 ~~~lIDvR~~~-e---f~-----~ghIpG--AiniP~~--------~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~~ 79 (104)
T PRK10287 20 AEHWIDVRVPE-Q---YQ-----QEHVQG--AINIPLK--------EVKERIATAVPDKNDTVKLYCNAGR-QSGQAKEI 79 (104)
T ss_pred CCEEEECCCHH-H---Hh-----cCCCCc--cEECCHH--------HHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHHHH
Confidence 37899999975 1 11 001122 2455543 3333333332234578999999996 87766555
Q ss_pred HHHHcCC
Q 002791 368 WRQYMAR 374 (881)
Q Consensus 368 lr~l~Gv 374 (881)
+.. +|.
T Consensus 80 L~~-~G~ 85 (104)
T PRK10287 80 LSE-MGY 85 (104)
T ss_pred HHH-cCC
Confidence 543 453
No 139
>PRK07053 glutamine amidotransferase; Provisional
Probab=67.79 E-value=13 Score=39.90 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=46.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH-
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 767 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT- 767 (881)
+.++|+||.+...+-. -.+.++|.+ .|+.+.+-......+ ...+ ..++|.+|+.||-..
T Consensus 1 ~m~~ilviqh~~~e~~---g~i~~~L~~-~g~~~~v~~~~~~~~---------------~~~~-~~~~d~lii~Ggp~~~ 60 (234)
T PRK07053 1 MMKTAVAIRHVAFEDL---GSFEQVLGA-RGYRVRYVDVGVDDL---------------ETLD-ALEPDLLVVLGGPIGV 60 (234)
T ss_pred CCceEEEEECCCCCCC---hHHHHHHHH-CCCeEEEEecCCCcc---------------CCCC-ccCCCEEEECCCCCCC
Confidence 3568999988765322 226777766 576654321110000 0112 245899999997532
Q ss_pred -----------HHHHHHhcCCCCCcEEEEeCCC
Q 002791 768 -----------ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 768 -----------~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
++...+.+...++|||||-+|+
T Consensus 61 ~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 61 YDDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2333444445689999999874
No 140
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=67.75 E-value=8 Score=44.01 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=51.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.....+.++...|.+ .++++.+-..+. ..|....+... ...+ ..++|+||.||| |++
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-Gs~ 95 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEA-AGIEVTVFDDVE----ADPPEAVVEAA----VEAARAAGADGVIGFGG-GSS 95 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 479999986542233456778888876 577665422211 11111111000 0011 347899999999 888
Q ss_pred HHHHHhcC-------------------CCCCcEEEEeC
Q 002791 769 LHASNLFR-------------------GAVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGIN~ 787 (881)
+-+++.+. ...+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 133 (376)
T cd08193 96 MDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPT 133 (376)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC
Confidence 88887653 13578888876
No 141
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=67.31 E-value=26 Score=31.44 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=18.1
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
..+.||+|+|..|. |+-.++..+ ..+|.
T Consensus 59 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASGW-RSALAGKTL-QDMGL 86 (103)
T ss_pred CCCCeEEEEcCCCC-cHHHHHHHH-HHcCh
Confidence 35679999999886 765444333 33453
No 142
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=66.71 E-value=14 Score=33.50 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=43.2
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCC--CCHHHHHHHHHHHhcCCCCcE
Q 002791 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA--PTMEQVEKFASLVSNSSKKPL 350 (881)
Q Consensus 275 pT~eDL~~LkelG--IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~--ps~E~v~af~~il~d~~~~PV 350 (881)
++++++..+.+.+ --.|||.|+.. + |. .-...|. +++|...... .....+.. ...+....+.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~-e---~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~-~~~~~~~~~~~v 68 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSP-D---FR-----RGHIEGS--INIPFSSVFLKEGELEQLPT-VPRLENYKGKII 68 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHH-H---Hh-----CCccCCC--EeCCHHHhcccccccccccc-hHHHHhhcCCeE
Confidence 3566777766553 23789999864 1 11 0122332 4556532110 00011100 111111236799
Q ss_pred EEeCccCCChHHHHHHHHHHHcCC
Q 002791 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 351 LVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
+++|..|. |+..++..+. .+|.
T Consensus 69 v~~c~~g~-~s~~~a~~L~-~~G~ 90 (105)
T cd01525 69 VIVSHSHK-HAALFAAFLV-KCGV 90 (105)
T ss_pred EEEeCCCc-cHHHHHHHHH-HcCC
Confidence 99999998 8776655443 3564
No 143
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=66.55 E-value=4.3 Score=45.99 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=41.3
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHHcC
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIYG 811 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~-------G---~LGFLt~~~~edl~~~L~~Il~G 811 (881)
.++|.+|+||||||+-.|..+.. ..++||+||-. | ++||-|.. +.+.+.++++...
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~--~~~~~~i~~l~~~ 161 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTAL--KTIVEAIDRIRDT 161 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHH--HHHHHHHHHHHHh
Confidence 47899999999999988776543 24899999954 2 68887764 3456677777643
No 144
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=65.31 E-value=13 Score=34.91 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=38.6
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHH
Q 002791 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMV 365 (881)
Q Consensus 286 lGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLa 365 (881)
.--+.+||.|+.+ + +. .....| -+++|.. .+...+..+....+.||+++|..|. |+...+
T Consensus 16 ~~~~~lIDvR~~~-e---f~-----~ghIpg--Ainip~~--------~l~~~l~~~~~~~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 16 FAAEHWIDVRIPE-Q---YQ-----QEHIQG--AINIPLK--------EIKEHIATAVPDKNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred ccCCEEEECCCHH-H---Hh-----cCCCCC--CEECCHH--------HHHHHHHHhCCCCCCeEEEEeCCCH-HHHHHH
Confidence 3557899999865 1 11 011122 2445542 3333333322234678999999998 888776
Q ss_pred HHHHHHcCC
Q 002791 366 SRWRQYMAR 374 (881)
Q Consensus 366 aLlr~l~Gv 374 (881)
..++. +|.
T Consensus 76 ~~L~~-~G~ 83 (101)
T TIGR02981 76 DILLD-MGY 83 (101)
T ss_pred HHHHH-cCC
Confidence 65544 453
No 145
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=64.65 E-value=37 Score=34.47 Aligned_cols=97 Identities=9% Similarity=0.115 Sum_probs=46.5
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCc-chhhhh----HHHHhhCCcEEEEeec---CCCCCCCHHHHHHHHHH-Hhc
Q 002791 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDN-FYEAAI----DDAILSGKVELIKIPV---EVRTAPTMEQVEKFASL-VSN 344 (881)
Q Consensus 274 qpT~eDL~~LkelGIKTIIDLRsee~Ee~-~~~~~e----~~~~e~~GI~yIhIPV---~d~~~ps~E~v~af~~i-l~d 344 (881)
.++.+++..+.+.+=..|||.|+.. +.+ .+.... ...-...|. +++|. .....+..+.+.+.+.. ...
T Consensus 37 ~vs~~el~~~l~~~~~~lIDVR~~~-~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 37 VLDTEAAQALLARGPVALIDVYPRP-PKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCCc-cccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 5688888877666545699999753 110 010000 000022342 33443 21122222222222211 111
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
..+.||+++|..|.-|+...+.+++. +|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~-~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALA-YGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHh-cCC
Confidence 35789999999987566654444433 453
No 146
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=64.50 E-value=11 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=27.0
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHH
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 379 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddI 379 (881)
..+.+|||||.-|.|||..+..|...++.=...+|
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi 376 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRTI 376 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHhCchhhhH
Confidence 45679999999999999999999877555333333
No 147
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=64.44 E-value=9.9 Score=43.60 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=43.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.....+.++.+.|++ .|+.+.+-..+. ..|....+... .+.. ..++|+||.||| |..
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~-~~i~~~~f~~v~----~np~~~~v~~~----~~~~~~~~~D~IiaiGG-GS~ 100 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEE-RNIFSVIYDGTQ----PNPTTENVAAG----LKLLKENNCDSVISLGG-GSP 100 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHHcCCCEEEEeCC-chH
Confidence 479999986543334566788889876 587664432211 01111101000 0001 357999999999 677
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
+-+++.+
T Consensus 101 iD~AK~i 107 (383)
T PRK09860 101 HDCAKGI 107 (383)
T ss_pred HHHHHHH
Confidence 7777654
No 148
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=64.20 E-value=11 Score=43.03 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=51.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||....-.......++.+.|.+ .|+++.+...+. ..|....+... .... ..++|+||.||| |++
T Consensus 28 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 97 (377)
T cd08176 28 FKKALIVTDKGLVKIGVVEKVTDVLDE-AGIDYVIYDGVK----PNPTITNVKDG----LAVFKKEGCDFIISIGG-GSP 97 (377)
T ss_pred CCeEEEECCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 378999986543223457788889876 577665432221 11111101000 0011 247899999999 888
Q ss_pred HHHHHhcC-------------------CCCCcEEEEeC
Q 002791 769 LHASNLFR-------------------GAVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGIN~ 787 (881)
+-+++.+. ...+|++.|-+
T Consensus 98 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 135 (377)
T cd08176 98 HDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINT 135 (377)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCC
Confidence 88877642 23578888876
No 149
>PRK06490 glutamine amidotransferase; Provisional
Probab=63.61 E-value=11 Score=40.52 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=45.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH-
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~- 768 (881)
..+|+||-+...+-. ..+.+||.+ .|.++.+-....+ ....+-..++|.+|+.||=+++
T Consensus 7 ~~~vlvi~h~~~~~~---g~l~~~l~~-~g~~~~v~~~~~~----------------~~~p~~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 7 KRPVLIVLHQERSTP---GRVGQLLQE-RGYPLDIRRPRLG----------------DPLPDTLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CceEEEEecCCCCCC---hHHHHHHHH-CCCceEEEeccCC----------------CCCCCcccccCEEEEECCCCCCC
Confidence 458899988764322 235666665 4665543211100 0011112458999999998753
Q ss_pred -----H----HHHHhcCCCCCcEEEEeCCC
Q 002791 769 -----L----HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 -----L----~Aar~~~~~~~PVLGIN~G~ 789 (881)
+ ...+.+....+|||||-+|+
T Consensus 67 d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 67 DPDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 2 22333334689999999974
No 150
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=63.40 E-value=17 Score=43.67 Aligned_cols=66 Identities=29% Similarity=0.377 Sum_probs=43.9
Q ss_pred EEEEcCchHH---HHHHHhcCCC-CCcE--EEEeCC-----CcccccCCCcccHHHHHHHHHcCCCCCCcceeEEeeEEE
Q 002791 759 VACLGGDGVI---LHASNLFRGA-VPPV--ISFNLG-----SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 827 (881)
Q Consensus 759 VIvLGGDGT~---L~Aar~~~~~-~~PV--LGIN~G-----~LGFLt~~~~edl~~~L~~Il~G~y~~~G~~Ie~R~rL~ 827 (881)
|++-|||||+ |.+.-.+.-. .||| |...+| .||.=--+.-+-+.+.|.++..|. +.-..|.+|+
T Consensus 420 ILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gt-----vVqLDRW~lh 494 (1004)
T KOG0782|consen 420 ILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGT-----VVQLDRWRLH 494 (1004)
T ss_pred EEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCc-----EEeeeeeeec
Confidence 6778999995 6666666543 3443 333334 344444455667888999999997 3455799998
Q ss_pred EE
Q 002791 828 CE 829 (881)
Q Consensus 828 v~ 829 (881)
++
T Consensus 495 vE 496 (1004)
T KOG0782|consen 495 VE 496 (1004)
T ss_pred cc
Confidence 86
No 151
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=62.26 E-value=17 Score=37.57 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=45.1
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH---
Q 002791 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL--- 769 (881)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L--- 769 (881)
|+||-+.+. ....+++||.+ .|+.+.+-+.....+. +.. ..+.|.+|..||.|..-
T Consensus 2 il~id~~ds----ft~~~~~~l~~-~g~~~~~~~~~~~~~~--------------~~~--~~~~~~iilsgGp~~~~~~~ 60 (193)
T PRK08857 2 LLMIDNYDS----FTYNLYQYFCE-LGAQVKVVRNDEIDID--------------GIE--ALNPTHLVISPGPCTPNEAG 60 (193)
T ss_pred EEEEECCCC----cHHHHHHHHHH-CCCcEEEEECCCCCHH--------------HHh--hCCCCEEEEeCCCCChHHCc
Confidence 677776654 24457888876 5877655332100000 001 12478999999998743
Q ss_pred ---HHHHhcCCCCCcEEEEeCCC
Q 002791 770 ---HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 770 ---~Aar~~~~~~~PVLGIN~G~ 789 (881)
...+.+ ...+|||||-+|+
T Consensus 61 ~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 61 ISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred chHHHHHHh-cCCCCEEEEcHHH
Confidence 333333 3689999999984
No 152
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=61.89 E-value=7 Score=47.34 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=38.4
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCCCcccHHHHHHHHH
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~-------G-----~LGFLt~~~~edl~~~L~~Il 809 (881)
-++|.+|+||||||+-.|..+.. +..++|+||-- | ++||=|... -+.+.|..+.
T Consensus 189 l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k--~~a~~I~ni~ 259 (568)
T PLN02251 189 LDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACK--IYSEMIGNVM 259 (568)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHH--HHHHHHHHHH
Confidence 36899999999999998887643 45699999943 2 567776633 3445555554
No 153
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=61.59 E-value=7.4 Score=46.91 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=37.3
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCCCcccHHHHHHHH
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQV 808 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~-------G-----~LGFLt~~~~edl~~~L~~I 808 (881)
-++|.+|+||||||+=.|..+.. +..++|+||-- | ++||-|... -+.+.+..+
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~--~~~~~I~~i 229 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACK--IYSELIGNI 229 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH--HHHHHHHHH
Confidence 36899999999999988877643 46799999943 2 567766543 233444444
No 154
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=61.46 E-value=7.6 Score=45.12 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=53.6
Q ss_pred cccccCCchhhhhccc-----------ccCCcEEEEEecCCh---hHHHHHHHHHHH--HhcCCCeEEEEccchhhhhhc
Q 002791 671 SLAFTHPSTQQQMLMW-----------KTTPRTVLVLKKPGP---ALMEEAKEVASF--LYHQEKMNILVEPDVHDIFAR 734 (881)
Q Consensus 671 ~~~~~~pstq~~~L~W-----------~~~pkkVlIV~K~~~---ea~e~a~eL~~~--L~~~~GveV~vE~~~~~~l~~ 734 (881)
...|-|+.+|.-.+ | ...||+++|+.+|.. ......+.+..+ |.. -..+|+|.+...+.++-
T Consensus 129 q~tf~~~~~q~c~~-W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~-v~tkvivTErAnhA~d~ 206 (516)
T KOG1115|consen 129 QFTFGHMDLQTCQS-WMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWETVSKIFILAK-VNTKVIVTERANHAFDV 206 (516)
T ss_pred cceEecccHHHHHH-HHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhhhhhhhEEeee-cceeEEEEccccchhhh
Confidence 45667776654221 2 236999999998873 355555555444 322 35667776664332211
Q ss_pred CCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhc
Q 002791 735 IPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLF 775 (881)
Q Consensus 735 ~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~Aar~~ 775 (881)
+ +.-..+++ ...|-+|++||||-|=..++-+
T Consensus 207 ~---------~ei~~~~~-~~yDGiv~VGGDG~FnEiL~G~ 237 (516)
T KOG1115|consen 207 M---------AEIQNKEL-HTYDGIVAVGGDGFFNEILNGY 237 (516)
T ss_pred h---------hhCCHhhh-hhcccEEEecCchhHHHHHhhh
Confidence 1 11111233 4589999999999876555533
No 155
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=61.23 E-value=26 Score=41.49 Aligned_cols=74 Identities=8% Similarity=0.206 Sum_probs=46.0
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHH------HHHHHHHH-HhcCCCCcEEEeCccCC
Q 002791 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME------QVEKFASL-VSNSSKKPLYLHSKEGV 358 (881)
Q Consensus 286 lGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E------~v~af~~i-l~d~~~~PVLVHCtAGK 358 (881)
..+..||++........ .......++|+|+......+.. .+..|+.. +....+++|||+|..||
T Consensus 317 ~~~~~vI~~s~~~~~~~---------~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGk 387 (451)
T PF04179_consen 317 SEFDCVINCSESPTPKE---------SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGK 387 (451)
T ss_pred CCcCEEEEcCCCccccc---------ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcc
Confidence 47889999976541111 1234678999999865554432 23334333 22224789999999999
Q ss_pred ChHHHHHHHH
Q 002791 359 WRTYAMVSRW 368 (881)
Q Consensus 359 DRTGaLaaLl 368 (881)
|..-.+++.+
T Consensus 388 DlSVgVaLaI 397 (451)
T PF04179_consen 388 DLSVGVALAI 397 (451)
T ss_pred hHHHHHHHHH
Confidence 9987444333
No 156
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=60.58 E-value=14 Score=41.44 Aligned_cols=91 Identities=21% Similarity=0.194 Sum_probs=49.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~--vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT 767 (881)
.++++||....-.. ....++.+.|.+ .|+++. +-+... ..|....+......-.+.-..+.|+||.||| |+
T Consensus 20 ~~~~livtd~~~~~-~~~~~v~~~L~~-~g~~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 92 (344)
T TIGR01357 20 PSKLVIITDETVAD-LYADKLLEALQA-LGYNVLKLTVPDGE----ESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GV 92 (344)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceeEEEeCCCC----CCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hH
Confidence 47899998554322 256778888876 466542 211100 0011000000000000011234699999998 88
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002791 768 ILHASNLFR---GAVPPVISFNL 787 (881)
Q Consensus 768 ~L~Aar~~~---~~~~PVLGIN~ 787 (881)
++-+++.++ ...+|++.|.+
T Consensus 93 v~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 93 VGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHHccCCCEEEecC
Confidence 888877764 46789999887
No 157
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=60.08 E-value=8.2 Score=46.68 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=36.9
Q ss_pred CccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC------------CCcccccCCCcccHHHHHHHH
Q 002791 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL------------GSLGFLTSHPFEDYRQDLRQV 808 (881)
Q Consensus 755 ~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~------------G~LGFLt~~~~edl~~~L~~I 808 (881)
++|.+|+||||||+=.|..+.. +..+||+||-- =++||=|... -+.+.+..+
T Consensus 164 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~--~~~~~I~~i 232 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATK--TYSEMIGNI 232 (555)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHH--HHHHHHHHH
Confidence 7899999999999988877643 46899999932 1567766533 234445444
No 158
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=60.07 E-value=18 Score=45.18 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~ 768 (881)
..++|+||-..+. ....+.+||.+ .|+++.+-..... .+..+ ..++|.||..||-|+.
T Consensus 515 ~~~~IlVID~gds----~~~~l~~~L~~-~G~~v~vv~~~~~----------------~~~~~-~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLVDHEDS----FVHTLANYLRQ-TGASVTTLRHSHA----------------EAAFD-ERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEEECCCh----hHHHHHHHHHH-CCCeEEEEECCCC----------------hhhhh-hcCCCEEEEcCCCCCc
Confidence 3568999976632 24567888876 5887754322100 00001 1358999999999885
Q ss_pred -----HHHHHhcCCCCCcEEEEeCCC
Q 002791 769 -----LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 -----L~Aar~~~~~~~PVLGIN~G~ 789 (881)
....+.+...++|||||-+|.
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHH
Confidence 334444445689999999974
No 159
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=59.64 E-value=8.3 Score=47.11 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEe
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN 786 (881)
-++|.+|+||||||+-.|..+.. +.+++|+||-
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIP 209 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVP 209 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEec
Confidence 36899999999999988877543 3589999993
No 160
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=59.50 E-value=13 Score=42.59 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=44.0
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH
Q 002791 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (881)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT 767 (881)
.++++||.-+.- .....+.++.+.|.+ .|+++.+-..+. ..|.+..+... .+.+ ..++|+||.||| |+
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 95 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVT----PNPTVDQVDEA----AKLGREFGAQAVIAIGG-GS 95 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-cc
Confidence 478999986553 344556788888876 577665433221 11111111000 0011 246899999999 77
Q ss_pred HHHHHHhc
Q 002791 768 ILHASNLF 775 (881)
Q Consensus 768 ~L~Aar~~ 775 (881)
++-+++.+
T Consensus 96 ~iD~aK~i 103 (383)
T cd08186 96 PIDSAKSA 103 (383)
T ss_pred HHHHHHHH
Confidence 77777654
No 161
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=59.48 E-value=14 Score=42.18 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=42.7
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH
Q 002791 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (881)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT 767 (881)
.++++||.-... .......++.+.|.+ .|+++.+-..+. ..|....+... .... ..++|+||.||| |.
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS 92 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVE----PDPSVETVLKG----AEAMREFEPDWIIALGG-GS 92 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-cc
Confidence 378899875442 344566788888876 577765432211 11111101000 0011 347899999999 77
Q ss_pred HHHHHHhc
Q 002791 768 ILHASNLF 775 (881)
Q Consensus 768 ~L~Aar~~ 775 (881)
.+-+++.+
T Consensus 93 viD~AK~i 100 (375)
T cd08179 93 PIDAAKAM 100 (375)
T ss_pred HHHHHHHH
Confidence 77777654
No 162
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=59.07 E-value=39 Score=31.54 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCHhhHHHHHHcC------CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCC
Q 002791 275 VTEEGLKWLMEKG------YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK 348 (881)
Q Consensus 275 pT~eDL~~LkelG------IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~ 348 (881)
++++++..+.+.+ =-.|||.|+.+ +. .....| -+++|+.... +.+......+......
T Consensus 4 is~~el~~~l~~~~~~~~~~~~iiDvR~~e-----f~-----~ghipg--Ai~ip~~~~~----~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 4 ISPEELVALLENSDSNAGKDFVVVDLRRDD-----YE-----GGHIKG--SINLPAQSCY----QTLPQVYALFSLAGVK 67 (113)
T ss_pred cCHHHHHHHHhCCccccCCcEEEEECCchh-----cC-----CCcccC--ceecchhHHH----HHHHHHHHHhhhcCCC
Confidence 4677777776665 23699999752 11 011123 3566765211 1122222212123456
Q ss_pred cEEEeCccCCChHHHHH
Q 002791 349 PLYLHSKEGVWRTYAMV 365 (881)
Q Consensus 349 PVLVHCtAGKDRTGaLa 365 (881)
+|++||..|-.|+-..+
T Consensus 68 ~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 68 LAIFYCGSSQGRGPRAA 84 (113)
T ss_pred EEEEECCCCCcccHHHH
Confidence 89999997533765443
No 163
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=58.92 E-value=18 Score=40.72 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=50.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
.++++||..+.-... ...++.+.|.+ .|+++.+....... ..|....+... ...+.+++|+||.||| |.++
T Consensus 23 ~~~~livtd~~~~~~-~~~~v~~~l~~-~~i~~~~~~~~~~~--~~pt~~~v~~~----~~~~~~~~d~IIaIGG-Gs~~ 93 (348)
T cd08175 23 YKKALIVADENTYAA-AGKKVEALLKR-AGVVVLLIVLPAGD--LIADEKAVGRV----LKELERDTDLIIAVGS-GTIN 93 (348)
T ss_pred CCcEEEEECCcHHHH-HHHHHHHHHHH-CCCeeEEeecCCCc--ccCCHHHHHHH----HHHhhccCCEEEEECC-cHHH
Confidence 378999985543211 25788888876 57755321110000 00111101000 0111227999999999 8999
Q ss_pred HHHHhcCC-CCCcEEEEeC
Q 002791 770 HASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (881)
-+++.+.- ..+|++.|.+
T Consensus 94 D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 94 DITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHHhcCCCEEEecC
Confidence 99887643 5789999986
No 164
>PRK13566 anthranilate synthase; Provisional
Probab=58.74 E-value=19 Score=44.95 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH-
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 767 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT- 767 (881)
..++|+||-..+. ....|.+||.+ .|++|.+-...... +..+ ..++|.||+.||-|+
T Consensus 525 ~g~~IlvID~~ds----f~~~l~~~Lr~-~G~~v~vv~~~~~~----------------~~~~-~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLVDHEDS----FVHTLANYFRQ-TGAEVTTVRYGFAE----------------EMLD-RVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEEECCCc----hHHHHHHHHHH-CCCEEEEEECCCCh----------------hHhh-hcCCCEEEECCCCCCh
Confidence 4568999887742 25578889876 58887653321100 0001 135899999999875
Q ss_pred ----HHHHHHhcCCCCCcEEEEeCCC
Q 002791 768 ----ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 768 ----~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+....+.+...++|||||-+|+
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 4445555556789999999984
No 165
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=58.66 E-value=18 Score=40.77 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=56.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
++++||.-..-. .....++.+.|.+ .|+++.+-..+. ..|....+.... . .-...++|+||.||| |+++-
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~~--~-~~~~~~~d~iiavGG-Gs~~D 92 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQ-SGIEITDFIWYG----GESTYENVERLK--K-NPAVQEADMIFAVGG-GKAID 92 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHH-CCCeEEEEEecC----CCCCHHHHHHHH--H-HHhhcCCCEEEEeCC-cHHHH
Confidence 789999865432 2346778888876 577654211110 011110000000 0 001347899999999 89999
Q ss_pred HHHhcCC-CCCcEEEEeC--CCcccccCC
Q 002791 771 ASNLFRG-AVPPVISFNL--GSLGFLTSH 796 (881)
Q Consensus 771 Aar~~~~-~~~PVLGIN~--G~LGFLt~~ 796 (881)
+++.+.. ..+|++.|.+ |+=+..|.+
T Consensus 93 ~aK~ia~~~~~p~i~VPTt~gtgse~t~~ 121 (345)
T cd08171 93 TVKVLADKLGKPVFTFPTIASNCAAVTAV 121 (345)
T ss_pred HHHHHHHHcCCCEEEecCccccCccccce
Confidence 9987653 4789999987 555555554
No 166
>PRK07411 hypothetical protein; Validated
Probab=58.48 E-value=18 Score=41.71 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=47.3
Q ss_pred CCCHhhHHHHHHcCC--cEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 002791 274 QVTEEGLKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (881)
Q Consensus 274 qpT~eDL~~LkelGI--KTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVL 351 (881)
.++.+++..+.+.+- -.|||.|+.. + +. .-...| -+++|+.+.... .....+.++ ..++||+
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~-E---~~-----~ghIpG--AiniP~~~l~~~--~~~~~l~~l---~~d~~IV 346 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPN-E---YE-----IARIPG--SVLVPLPDIENG--PGVEKVKEL---LNGHRLI 346 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHH-H---hc-----cCcCCC--CEEccHHHhhcc--cchHHHhhc---CCCCeEE
Confidence 567888877765552 3699999865 1 11 011223 345666422111 011222222 2467999
Q ss_pred EeCccCCChHHHHHHHHHHHcCC
Q 002791 352 LHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 352 VHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
+||..|. |+...+..++. +|.
T Consensus 347 vyC~~G~-RS~~aa~~L~~-~G~ 367 (390)
T PRK07411 347 AHCKMGG-RSAKALGILKE-AGI 367 (390)
T ss_pred EECCCCH-HHHHHHHHHHH-cCC
Confidence 9999998 98876655544 565
No 167
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=58.44 E-value=15 Score=41.94 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=51.4
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchH
Q 002791 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (881)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDGT 767 (881)
.++++||.-+.. .....+.++.+.|.+ .|+++.+-..+. ..|....+... ... ...++|+||.||| |+
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 97 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVE----PNPRLETVREG----IELCKEEKVDFILAVGG-GS 97 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCcc----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-hH
Confidence 479999976543 334556778888876 577765432221 01111000000 000 1347899999999 88
Q ss_pred HHHHHHhcCC-------------------CCCcEEEEeC
Q 002791 768 ILHASNLFRG-------------------AVPPVISFNL 787 (881)
Q Consensus 768 ~L~Aar~~~~-------------------~~~PVLGIN~ 787 (881)
.+-+++.+.- ..+|++.|.+
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 8887775422 3579999986
No 168
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=58.24 E-value=9 Score=46.32 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=37.9
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCCCcccHHHHHHHHH
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~-------G-----~LGFLt~~~~edl~~~L~~Il 809 (881)
-++|.+|+||||||+-.|..+.. +..++|+||-- | ++||=|.... +.+.+.++.
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~--~a~~I~ni~ 235 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKI--YSELIGNVM 235 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH--HHHHHHHHH
Confidence 36899999999999988877543 45699999943 3 5677776432 344454444
No 169
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=58.20 E-value=21 Score=39.96 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 329 APTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 329 ~ps~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
..+.+++++.+.-..-..++||+++|..|. |...++..+. .+|.
T Consensus 251 ~~~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~~~~~~L~-~~G~ 294 (320)
T PLN02723 251 LLPAEELKKRFEQEGISLDSPIVASCGTGV-TACILALGLH-RLGK 294 (320)
T ss_pred CCCHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCC
Confidence 345666666554322245779999999987 7765555554 4674
No 170
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=58.19 E-value=17 Score=34.89 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=31.9
Q ss_pred HHHHHHcCCcEEEEcCCCc-ccCcchh-hhhHHHHhhCCcEEEEeecC
Q 002791 280 LKWLMEKGYKTIVDIRAER-VKDNFYE-AAIDDAILSGKVELIKIPVE 325 (881)
Q Consensus 280 L~~LkelGIKTIIDLRsee-~Ee~~~~-~~e~~~~e~~GI~yIhIPV~ 325 (881)
+..|++.||+.|||.|.-. ...+++. ......+...||.|+|+|-.
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 4578889999999988753 1122221 23345667789999999964
No 171
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=57.86 E-value=16 Score=38.01 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=45.3
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH--
Q 002791 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL-- 769 (881)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~L-- 769 (881)
|+||-+.+. ....|.+||.+ .|+++.+-..... +.+++ ..++|.||..||=|..-
T Consensus 2 il~idn~ds----ft~nl~~~l~~-~g~~v~v~~~~~~-----------------~~~~~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYDS----FTFNLVQFLGE-LGQELVVKRNDEV-----------------TISDIENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCCc----cHHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHhhCCCCEEEECCCCCChHhC
Confidence 667766654 24457888876 5777765432100 01111 13579999999998743
Q ss_pred ----HHHHhcCCCCCcEEEEeCCC
Q 002791 770 ----HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 770 ----~Aar~~~~~~~PVLGIN~G~ 789 (881)
...+.+. ..+|||||-+|+
T Consensus 60 ~~~~~~i~~~~-~~~PvLGIClG~ 82 (195)
T PRK07649 60 GISMEVIRYFA-GKIPIFGVCLGH 82 (195)
T ss_pred CCchHHHHHhc-CCCCEEEEcHHH
Confidence 3333333 579999999873
No 172
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=57.83 E-value=29 Score=38.78 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=51.1
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHHHHhhCCc-EEEEeecC-----CCCCCCHHHHHHHHHHHhcCCC
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKV-ELIKIPVE-----VRTAPTMEQVEKFASLVSNSSK 347 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~--Ee~~~~~~e~~~~e~~GI-~yIhIPV~-----d~~~ps~E~v~af~~il~d~~~ 347 (881)
+.+.++...+.+-+.|||-|+.+. .....|.. ....-| --+++|.. +..-.+.+.++.|.+..--...
T Consensus 159 ~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~----~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 234 (285)
T COG2897 159 DATLVADALEVPAVLLIDARSPERFRGKEPEPRD----GKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPD 234 (285)
T ss_pred CHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCC----CCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCC
Confidence 446666666666677999999851 11111100 001111 12233321 1223456777777755323567
Q ss_pred CcEEEeCccCCChHHHHHHHHHHH
Q 002791 348 KPLYLHSKEGVWRTYAMVSRWRQY 371 (881)
Q Consensus 348 ~PVLVHCtAGKDRTGaLaaLlr~l 371 (881)
++|+++|..|. |+...+..+..+
T Consensus 235 ~~vI~yCgsG~-~As~~~~al~~l 257 (285)
T COG2897 235 KEVIVYCGSGV-RASVTWLALAEL 257 (285)
T ss_pred CCEEEEcCCch-HHHHHHHHHHHh
Confidence 89999999999 888766666553
No 173
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=57.63 E-value=23 Score=39.90 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=52.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.. ....++.+.|.+ .|+++.+. .+ ...|....+... .+.. ..++|+||.||| |..
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~-~~i~~~~~-~~----~~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 89 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAA-AGIDARFE-VF----GGECTRAEIERL----AEIARDNGADVVIGIGG-GKT 89 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHh-CCCeEEEE-Ee----CCcCCHHHHHHH----HHHHhhcCCCEEEEecC-chh
Confidence 37999998443222 567788888876 57765322 11 011111101000 0011 247899999999 889
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002791 769 LHASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~~-~~~PVLGIN~ 787 (881)
+-+++.+.- ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCC
Confidence 998887653 4789999986
No 174
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=57.62 E-value=37 Score=34.69 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=55.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhh---hhhcCCCCccceeeeccCcccc-CCCccEEEEEcCc
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHD---IFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD 765 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~---~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGD 765 (881)
.+||+|+.-++-+..+.+. ..+.|.+ .|++|.+-..... .+....+. ........++. .++.|+|++.||.
T Consensus 2 ~~~~~il~~~g~~~~e~~~-p~~~l~~-ag~~v~~~s~~~~~~~~v~ss~G~---~v~~d~~l~~~~~~~~D~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEETEAVT-TIDLLVR-GGIKVTTASVASDGNLEITCSRGV---KLLADAPLVEVADGDFDVIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcchhhHhH-HHHHHHH-CCCeEEEEEccCCCCceEEcCCCC---EEeCCCCHHHCCCCCCCEEEECCCC
Confidence 4678999887755444443 3344444 3665554221100 01101111 11111122232 2468999999996
Q ss_pred h---------HHHHHHHhcCCCCCcEEEEeCCCcccc
Q 002791 766 G---------VILHASNLFRGAVPPVISFNLGSLGFL 793 (881)
Q Consensus 766 G---------T~L~Aar~~~~~~~PVLGIN~G~LGFL 793 (881)
+ .++..++.+.....+|.+|-.|..-+|
T Consensus 77 ~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 77 KGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred chhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 4 367777777778999999999985544
No 175
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=57.51 E-value=9 Score=47.90 Aligned_cols=118 Identities=13% Similarity=0.098 Sum_probs=68.4
Q ss_pred cCCcEEEEEecCCh-hHH-HHHHHHHHHHhcCCCeEEEEccchhh-hhh---------------cCCCCccceeeeccCc
Q 002791 688 TTPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKMNILVEPDVHD-IFA---------------RIPGFGFVQTFYLQDT 749 (881)
Q Consensus 688 ~~pkkVlIV~K~~~-ea~-e~a~eL~~~L~~~~GveV~vE~~~~~-~l~---------------~~p~~~~v~~f~~~~~ 749 (881)
+.+++|+|+.--++ +-+ ..++.++.+... +|++|+--.+=.+ .+. ..++. ...+-...+.
T Consensus 387 ~~~~rIaIltsGG~apGmNaair~vv~~a~~-~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~~~ 464 (745)
T TIGR02478 387 ASRLRIAIIHVGAPAGGMNAATRSAVRYAIA-RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNRELPG 464 (745)
T ss_pred CCceEEEEEecCCCchhHHHHHHHHHHHHHh-CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCCch
Confidence 34579999998887 433 445677777665 5788775333111 110 01110 0000000000
Q ss_pred ccc--------CCCccEEEEEcCchHHHHHHHhcC------CCCCcEEEEeC----------CCcccccCCCcccHHHHH
Q 002791 750 SDL--------HERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL----------GSLGFLTSHPFEDYRQDL 805 (881)
Q Consensus 750 ~dl--------~~~~DlVIvLGGDGT~L~Aar~~~------~~~~PVLGIN~----------G~LGFLt~~~~edl~~~L 805 (881)
+++ .-++|.+|+||||||+-.+..+.. ...+||+||-. =++||-|..+ .+.+++
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~--~~~~~i 542 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN--EITEYC 542 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH--HHHHHH
Confidence 111 236899999999999987766543 25799999953 2688888753 345556
Q ss_pred HHHH
Q 002791 806 RQVI 809 (881)
Q Consensus 806 ~~Il 809 (881)
+++.
T Consensus 543 d~i~ 546 (745)
T TIGR02478 543 DNIK 546 (745)
T ss_pred HHHH
Confidence 6654
No 176
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=57.48 E-value=25 Score=32.63 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=43.8
Q ss_pred cCCCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHH-HHHHHHhcCCCC
Q 002791 272 GGQVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE-KFASLVSNSSKK 348 (881)
Q Consensus 272 SgqpT~eDL~~LkelG--IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~-af~~il~d~~~~ 348 (881)
+..++++++..+.+.+ --.|||.|+.. + |. .-...| .+++|... +. .....+ ..+.
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~-e---~~-----~ghIpg--A~~ip~~~--------l~~~~~~~i--~~~~ 65 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAE-A---YA-----RGHVPG--AINLPHRE--------ICENATAKL--DKEK 65 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHH-H---Hh-----cCCCCC--CEeCCHHH--------hhhHhhhcC--CCCC
Confidence 3367888888776654 24799999864 1 11 011223 23444331 11 111222 4578
Q ss_pred cEEEeCccCCC-hHHHHHHHHHHHcCC
Q 002791 349 PLYLHSKEGVW-RTYAMVSRWRQYMAR 374 (881)
Q Consensus 349 PVLVHCtAGKD-RTGaLaaLlr~l~Gv 374 (881)
||+++|..|.. |+..++..++ .+|.
T Consensus 66 ~vvvyc~~g~~~~s~~~a~~l~-~~G~ 91 (110)
T cd01521 66 LFVVYCDGPGCNGATKAALKLA-ELGF 91 (110)
T ss_pred eEEEEECCCCCchHHHHHHHHH-HcCC
Confidence 99999998863 5444444443 3565
No 177
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=57.48 E-value=17 Score=41.13 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=50.6
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002791 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (881)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDGT~ 768 (881)
++++||.-+.- .......++.+.|.+ .|+++.+-..+. ..|....+... ... ...++|+||.||| |++
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVE----ENPSLETIMEA----VEIAKKFNADFVIGIGG-GSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 79999987654 334456778888876 477665422211 11111100000 000 1346899999999 888
Q ss_pred HHHHHhcC------------------CCCCcEEEEeC
Q 002791 769 LHASNLFR------------------GAVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~------------------~~~~PVLGIN~ 787 (881)
+-+++.+. ...+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT 132 (357)
T cd08181 96 LDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPT 132 (357)
T ss_pred HHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeC
Confidence 88888432 23578888776
No 178
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=57.35 E-value=20 Score=40.88 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=43.6
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
++++||.-... .......++.+.|.+ .|+++.+-..+. ..|....+.... .. -...++|+||.||| |..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~~--~~-~~~~~~D~IiavGG-GS~i 96 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVE----PNPTTTTVMEGA--AL-AREEGCDFVVGLGG-GSSM 96 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCcc----CCCCHHHHHHHH--HH-HHHcCCCEEEEeCC-ccHH
Confidence 79999997654 345667888889876 577765422211 111111010000 00 01247899999999 7777
Q ss_pred HHHHhc
Q 002791 770 HASNLF 775 (881)
Q Consensus 770 ~Aar~~ 775 (881)
-+++.+
T Consensus 97 D~aK~i 102 (380)
T cd08185 97 DTAKAI 102 (380)
T ss_pred HHHHHH
Confidence 777654
No 179
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=57.33 E-value=11 Score=43.19 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=41.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-+.-.......++.+.|.+ .|+++.+-..+. ..|....+... ... ...++|+||.||| |..
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 90 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVE----PDPSLETVRKG----LELMNSFKPDTIIALGG-GSP 90 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999985432222356778888876 577765432221 11111111000 001 1347899999999 666
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
+-+++.+
T Consensus 91 iD~AK~i 97 (398)
T cd08178 91 MDAAKIM 97 (398)
T ss_pred HHHHHHH
Confidence 6666543
No 180
>PRK08250 glutamine amidotransferase; Provisional
Probab=56.54 E-value=21 Score=38.25 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=42.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH---
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI--- 768 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~--- 768 (881)
+|+|+.+..-+- ...+..|+.+ .|+++.+-... . + .....-..++|.+|+.||=.+.
T Consensus 2 ~i~vi~h~~~e~---~g~~~~~~~~-~g~~~~~~~~~-~------g---------~~~p~~~~~~d~vii~GGp~~~~~~ 61 (235)
T PRK08250 2 RVHFIIHESFEA---PGAYLKWAEN-RGYDISYSRVY-A------G---------EALPENADGFDLLIVMGGPQSPRTT 61 (235)
T ss_pred eEEEEecCCCCC---chHHHHHHHH-CCCeEEEEEcc-C------C---------CCCCCCccccCEEEECCCCCChhhc
Confidence 577777655321 2335666655 57766542111 0 0 0011112468999999994331
Q ss_pred ------------HHHHHhcCCCCCcEEEEeCC
Q 002791 769 ------------LHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 769 ------------L~Aar~~~~~~~PVLGIN~G 788 (881)
...++.+...++||+||-.|
T Consensus 62 ~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G 93 (235)
T PRK08250 62 REECPYFDSKAEQRLINQAIKAGKAVIGVCLG 93 (235)
T ss_pred cccccccchHHHHHHHHHHHHcCCCEEEEChh
Confidence 23344444578999999886
No 181
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=56.38 E-value=12 Score=42.34 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=43.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-+.-.....+.++.+.|.+ .|+++.+-..+. ..|....+... .... ..++|+||.||| |++
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GSv 93 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLED-AGLAAALFDEVP----PNPTEAAVEAG----LAAYRAGGCDGVIAFGG-GSA 93 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986553333456788888876 577765422211 11111101000 0111 357899999999 777
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
+-+++.+
T Consensus 94 iD~aK~i 100 (370)
T cd08192 94 LDLAKAV 100 (370)
T ss_pred HHHHHHH
Confidence 7777654
No 182
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=56.26 E-value=9.9 Score=47.63 Aligned_cols=117 Identities=16% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCcEEEEEecCCh-hHH-HHHHHHHHHHhcCCCeEEEEccchhh-hhh---------------cCCCCccceeeeccCcc
Q 002791 689 TPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKMNILVEPDVHD-IFA---------------RIPGFGFVQTFYLQDTS 750 (881)
Q Consensus 689 ~pkkVlIV~K~~~-ea~-e~a~eL~~~L~~~~GveV~vE~~~~~-~l~---------------~~p~~~~v~~f~~~~~~ 750 (881)
..++|+|+.--++ +-+ ..++.++.+... +|++|+--.+=.+ .+. ..++. ...+-...+.+
T Consensus 388 ~~~~IaIltsGG~apGmNaairavv~~a~~-~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~~~~~ 465 (762)
T cd00764 388 TNLNIAIVNVGAPAAGMNAAVRSAVRYGLA-HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRTLPKK 465 (762)
T ss_pred cccEEEEEecCCCchhHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCCCcHH
Confidence 4579999998887 444 445677777665 5888875333111 110 00110 00000000001
Q ss_pred cc--------CCCccEEEEEcCchHHHHHHHhcC------CCCCcEEEEeC-------C---CcccccCCCcccHHHHHH
Q 002791 751 DL--------HERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLR 806 (881)
Q Consensus 751 dl--------~~~~DlVIvLGGDGT~L~Aar~~~------~~~~PVLGIN~-------G---~LGFLt~~~~edl~~~L~ 806 (881)
++ ..++|.+|+||||||+-.+..+.. ...+|++||-. | ++||-|.+ +.+-+.++
T Consensus 466 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAl--n~~~~~id 543 (762)
T cd00764 466 DLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTAL--NALMKYCD 543 (762)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHH--HHHHHHHH
Confidence 11 246899999999999987766543 35799999943 3 68888864 34556666
Q ss_pred HHH
Q 002791 807 QVI 809 (881)
Q Consensus 807 ~Il 809 (881)
+|.
T Consensus 544 ~i~ 546 (762)
T cd00764 544 RIK 546 (762)
T ss_pred HHH
Confidence 664
No 183
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=56.21 E-value=18 Score=40.99 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=50.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~--vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT 767 (881)
.++++||.-..-.. ....++.+.|.+ .|+++. +-+... ..|.+..+......-.+.-..+.|+||.||| |+
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~-~gi~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 103 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEA-AGFEVDVVVLPDGE----QYKSLETLEKIYDALLEAGLDRSDTLIALGG-GV 103 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCC----CCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cH
Confidence 47899999654322 366788888876 466543 211110 0011000000000000011235699999998 88
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002791 768 ILHASNLFR---GAVPPVISFNL 787 (881)
Q Consensus 768 ~L~Aar~~~---~~~~PVLGIN~ 787 (881)
++-+++.++ ...+|++.|.+
T Consensus 104 v~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 104 IGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCc
Confidence 998888764 46899999887
No 184
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=56.07 E-value=14 Score=41.83 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=43.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.......++.+.|.+ .|+++.+-..+. ..|....+... .... ..++|+||.||| |++
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 92 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKE-AGIEVVIFDGVE----PNPTLSNVDAA----VAAYREEGCDGVIAVGG-GSV 92 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 479999986543223556788888876 577665322211 11111101000 0011 246899999999 888
Q ss_pred HHHHHhcC
Q 002791 769 LHASNLFR 776 (881)
Q Consensus 769 L~Aar~~~ 776 (881)
+-+++.+.
T Consensus 93 ~D~AK~va 100 (370)
T cd08551 93 LDTAKAIA 100 (370)
T ss_pred HHHHHHHH
Confidence 88887653
No 185
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=55.81 E-value=49 Score=36.20 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=42.1
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHHHhhCCcEEEEeecCC---------CCCCCHHHHHHHHHHHhc
Q 002791 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEV---------RTAPTMEQVEKFASLVSN 344 (881)
Q Consensus 275 pT~eDL~~LkelGIKTIIDLRsee~Ee~~~~-~~e~~~~e~~GI~yIhIPV~d---------~~~ps~E~v~af~~il~d 344 (881)
++.+++....+.+=-.|||.|+......... ..+-..-...|. +++|+.. ...++.+.++++++-+--
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 4666666665543357999997531010000 011011123343 3444321 112356667666665433
Q ss_pred CCCCcEEEeCccCC
Q 002791 345 SSKKPLYLHSKEGV 358 (881)
Q Consensus 345 ~~~~PVLVHCtAGK 358 (881)
..+.||+++|..|.
T Consensus 85 ~~d~~VVvyc~~~~ 98 (281)
T PRK11493 85 NQDKHLVVYDEGNL 98 (281)
T ss_pred CCCCEEEEECCCCC
Confidence 56789999998775
No 186
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=55.79 E-value=24 Score=40.07 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=50.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
.++++||....-.. ....++.+.|.+..++++++-++... .|....+......-.+.-..++|+||.||| |+++
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47899998655322 35677888885413566554332110 111100000000000111246899999998 8888
Q ss_pred HHHHhcC---CCCCcEEEEeC
Q 002791 770 HASNLFR---GAVPPVISFNL 787 (881)
Q Consensus 770 ~Aar~~~---~~~~PVLGIN~ 787 (881)
-++..++ ...+|++-|.+
T Consensus 97 D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 97 DVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 7777654 35789988887
No 187
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=55.40 E-value=35 Score=41.51 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=64.6
Q ss_pred CCcEEEEEecCCh---hHHHHHHHHHHHHhcCCCe--EEEEccch--hhhhhcCCCCccceeeeccCccccCCCccEEEE
Q 002791 689 TPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKM--NILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVAC 761 (881)
Q Consensus 689 ~pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~Gv--eV~vE~~~--~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIv 761 (881)
.+++++|+.+|.. .+.++.+..++-|...-++ +|++...- +.+|.. .....+.|-|||
T Consensus 178 r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~r---------------t~dl~kyDgIv~ 242 (579)
T KOG1116|consen 178 RPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVR---------------TLDLGKYDGIVC 242 (579)
T ss_pred CCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHH---------------hhhccccceEEE
Confidence 6889999999884 4777766555554443454 44433221 122210 112457899999
Q ss_pred EcCchHHHHHHHhcCC-------CCCcEEEEeCCC-cccccCCCcc---c-HHHHHHHHHcCC
Q 002791 762 LGGDGVILHASNLFRG-------AVPPVISFNLGS-LGFLTSHPFE---D-YRQDLRQVIYGN 812 (881)
Q Consensus 762 LGGDGT~L~Aar~~~~-------~~~PVLGIN~G~-LGFLt~~~~e---d-l~~~L~~Il~G~ 812 (881)
+||||++-.++.-+-. ..+||-=|-.|+ -||...+.-. + .-.+.-.+++|.
T Consensus 243 vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~iirg~ 305 (579)
T KOG1116|consen 243 VSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLIIRGR 305 (579)
T ss_pred ecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHHccC
Confidence 9999999998875431 467877777765 4444443221 1 334455566665
No 188
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=55.28 E-value=26 Score=40.06 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=42.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.......++.+.|.+ .|+++.+-..+. ..|.+..+... ...+ ..++|+||.||| |.+
T Consensus 30 ~~~~lvvtd~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 99 (382)
T PRK10624 30 FKKALIVTDKTLVKCGVVAKVTDVLDA-AGLAYEIYDGVK----PNPTIEVVKEG----VEVFKASGADYLIAIGG-GSP 99 (382)
T ss_pred CCEEEEEeCcchhhCcchHHHHHHHHH-CCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHH
Confidence 379999986542223456778888876 477665432221 11111101000 0011 347899999999 778
Q ss_pred HHHHHh
Q 002791 769 LHASNL 774 (881)
Q Consensus 769 L~Aar~ 774 (881)
+-+++.
T Consensus 100 iD~aK~ 105 (382)
T PRK10624 100 QDTCKA 105 (382)
T ss_pred HHHHHH
Confidence 877764
No 189
>PLN02335 anthranilate synthase
Probab=55.24 E-value=25 Score=37.42 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=46.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
..+|+||=..+. ....|++||.+ .|+.+.+.+.-. .+.+++ ..++|.||..||-|..
T Consensus 18 ~~~ilviD~~ds----ft~~i~~~L~~-~g~~~~v~~~~~-----------------~~~~~~~~~~~d~iVisgGPg~p 75 (222)
T PLN02335 18 NGPIIVIDNYDS----FTYNLCQYMGE-LGCHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGTP 75 (222)
T ss_pred cCcEEEEECCCC----HHHHHHHHHHH-CCCcEEEEECCC-----------------CCHHHHHhcCCCEEEEcCCCCCh
Confidence 458898855443 23457888876 587766543210 001111 2357999999999854
Q ss_pred ------HHHHHhcCCCCCcEEEEeCCC
Q 002791 769 ------LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 ------L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+...+.+ ...+|||||-+|+
T Consensus 76 ~d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 76 QDSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred hhccchHHHHHHh-CCCCCEEEecHHH
Confidence 3333333 3579999999984
No 190
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=55.11 E-value=48 Score=32.01 Aligned_cols=94 Identities=20% Similarity=0.106 Sum_probs=50.6
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH--
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV-- 767 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT-- 767 (881)
++|+|+.-++-...+.+ .+.+.|.. .|+++.+-....+.+....+.. +.+ ....++. ..+.|.+|+.||.+.
T Consensus 2 ~~v~ill~~g~~~~e~~-~~~~~~~~-a~~~v~vvs~~~~~v~s~~g~~-i~~--~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGVDAAELS-ALKAALKA-AGANVKVVAPTLGGVVDSDGKT-LEV--DQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCcCHHHHH-HHHHHHHH-CCCEEEEEecCcCceecCCCcE-Eec--ceeecCCChhhcCEEEECCCccCHH
Confidence 47888887775444433 45556654 3666554322111111111110 000 0112222 235899999999764
Q ss_pred -------HHHHHHhcCCCCCcEEEEeCCC
Q 002791 768 -------ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 768 -------~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
++..++.+.....||.+|-.|.
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 77 ALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred HHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 4455556556789999998874
No 191
>PLN02834 3-dehydroquinate synthase
Probab=55.03 E-value=20 Score=42.07 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=48.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
.++++||....-... ...++.+.|.+ .|+++.+...+...-...+....+...+..-.+.-.+..|+||.||| |+++
T Consensus 100 g~rvlIVtD~~v~~~-~~~~v~~~L~~-~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gsv~ 176 (433)
T PLN02834 100 GKRVLVVTNETVAPL-YLEKVVEALTA-KGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GVIG 176 (433)
T ss_pred CCEEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hHHH
Confidence 478999995553222 66778888876 47643321100000000011000000000000001123459999999 8888
Q ss_pred HHHHhcC---CCCCcEEEEeCC
Q 002791 770 HASNLFR---GAVPPVISFNLG 788 (881)
Q Consensus 770 ~Aar~~~---~~~~PVLGIN~G 788 (881)
-++..++ ..++|++-|.+.
T Consensus 177 D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 177 DMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHhcCCCCEEEECCc
Confidence 8877542 458899888874
No 192
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=54.49 E-value=18 Score=41.26 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
++++||....-.......++.+.|.+ .|+++.+ +.....-+........-..-...++|+||.||| |.++-
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~-~~i~~~~-------~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD 100 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDE-AGIAYEL-------FDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPID 100 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHH-CCCeEEE-------ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHH
Q ss_pred HHHhcC---------------------CCCCcEEEEeC
Q 002791 771 ASNLFR---------------------GAVPPVISFNL 787 (881)
Q Consensus 771 Aar~~~---------------------~~~~PVLGIN~ 787 (881)
+++.+. ...+|++.|-+
T Consensus 101 ~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 138 (379)
T TIGR02638 101 TAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPT 138 (379)
T ss_pred HHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECC
No 193
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=54.25 E-value=1e+02 Score=28.63 Aligned_cols=91 Identities=12% Similarity=0.194 Sum_probs=57.7
Q ss_pred cEEEEEecCChh-HHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~e-a~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
++|+++.-.+-. +.-++.++.++|.+ +|+++-++.--...+ +....++|+||+-. + |
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~e~-----------------~~~~~~~D~iv~t~-~---~ 60 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNEI-----------------ETYMDGVHLICTTA-R---V 60 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHHHH-----------------hhhcCCCCEEEECC-c---c
Confidence 479999999874 44446889999987 688876654211111 11225679876533 1 1
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcC
Q 002791 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (881)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~Il~G 811 (881)
...+ .++|++-+ ++||+.++.+++++.|..++.|
T Consensus 61 --~~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 61 --DRSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred --cccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 1111 15775432 4699999999999999888765
No 194
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=54.01 E-value=10 Score=49.61 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCccEEEEEcCchHHHHHHHhcCC----------CCCcEEEEeC-------C-----CcccccCCC
Q 002791 754 ERVDFVACLGGDGVILHASNLFRG----------AVPPVISFNL-------G-----SLGFLTSHP 797 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~~----------~~~PVLGIN~-------G-----~LGFLt~~~ 797 (881)
.++|.+|+||||||+=.|..+... ..+||+||-. | ++||-|..+
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 368999999999999988886432 4799999954 2 577777644
No 195
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=52.11 E-value=4.7 Score=47.97 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002791 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLaaLl 368 (881)
......+.|++||||||++-+-.
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp -----------------------
T ss_pred hCCeeeccCccCCccccccHHHH
Confidence 34567789999999999766544
No 196
>PRK05380 pyrG CTP synthetase; Validated
Probab=51.60 E-value=31 Score=41.65 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCCccEEEEEcCch-----HHHHHHHhcCCCCCcEEEEeCC
Q 002791 753 HERVDFVACLGGDG-----VILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 753 ~~~~DlVIvLGGDG-----T~L~Aar~~~~~~~PVLGIN~G 788 (881)
...+|-||.-||=| -.+.+++.+...++|+|||-+|
T Consensus 341 L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 341 LKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred hhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 35689999999843 2455666666689999999886
No 197
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=51.58 E-value=31 Score=35.74 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=27.1
Q ss_pred CCccEEEEEcCchHHHH----------HHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVILH----------ASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~----------Aar~~~~~~~PVLGIN~G~ 789 (881)
+++|.+|.-||.++... ..+.+...+.||+||-.|.
T Consensus 35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 46899999999998632 2333344689999999986
No 198
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=51.24 E-value=47 Score=40.81 Aligned_cols=96 Identities=11% Similarity=-0.019 Sum_probs=49.3
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCC-----CCCCCHHHHHHHHHHHhcCCCCc
Q 002791 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-----RTAPTMEQVEKFASLVSNSSKKP 349 (881)
Q Consensus 275 pT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d-----~~~ps~E~v~af~~il~d~~~~P 349 (881)
.+.+++....+.+=-.|||-|+.+ +-.+........-...|. +++|..+ ..-.+.+.++++++-+--..++|
T Consensus 149 v~~e~v~~~l~~~~~~iIDaR~~~-ef~G~~~~~~r~GHIPGA--vnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~ 225 (610)
T PRK09629 149 ATREYLQSRLGAADLAIWDARAPT-EYSGEKVVAAKGGHIPGA--VNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE 225 (610)
T ss_pred ccHHHHHHhhCCCCcEEEECCCcc-ccCCcccccccCCCCCCC--eecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 355555544433223589999875 221110000000012232 3445321 12345666766665432245789
Q ss_pred EEEeCccCCChHHHHHHHHHHHcCCC
Q 002791 350 LYLHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 350 VLVHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
|++||..|. |++.++..+ .++|.+
T Consensus 226 VVvYC~sG~-rAa~~~~~L-~~lG~~ 249 (610)
T PRK09629 226 VITHCQTHH-RSGFTYLVA-KALGYP 249 (610)
T ss_pred EEEECCCCh-HHHHHHHHH-HHcCCC
Confidence 999999997 877666555 456754
No 199
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=50.98 E-value=54 Score=30.51 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=39.6
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002791 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (881)
Q Consensus 275 pT~eDL~~LkelG--IKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLV 352 (881)
++++++..+...+ --.|||+|+.+ +.. -...| -+++|..... ..+.++.+...-..+.+++|
T Consensus 4 is~~~l~~~~~~~~~~~~iiDvR~~e-----~~~-----~hi~g--A~~ip~~~l~----~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 4 ISPAQLKGWIRNGRPPFQVVDVRDED-----YAG-----GHIKG--SWHYPSTRFK----AQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCHHHHHHHHHcCCCCEEEEEcCCcc-----cCC-----CcCCC--CEecCHHHHh----hCHHHHHHHHhcCCCCeEEE
Confidence 4667777776554 23599999752 110 01122 2455554211 12223322221134679999
Q ss_pred eCccCCChHHHHHHHH
Q 002791 353 HSKEGVWRTYAMVSRW 368 (881)
Q Consensus 353 HCtAGKDRTGaLaaLl 368 (881)
||..+..|....+..+
T Consensus 68 yC~~~~~r~~~aa~~l 83 (113)
T cd01531 68 HCALSQVRGPSAARKF 83 (113)
T ss_pred EeecCCcchHHHHHHH
Confidence 9984333777554443
No 200
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=50.51 E-value=19 Score=35.26 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=51.2
Q ss_pred cEEEEEecCChh-HHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~e-a~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
++|+|++-++.+ -.+.+..++++|.+..|++|.++.-....+. +.+.. .| ......++|.||+|=--|+.-
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~---~~g~~-~W----~~~~~~~ad~Vliv~S~~~~~ 72 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIA---RQGPP-RW----MERQIREADKVLIVCSPGYKE 72 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccc---cCCHH-HH----HHHHHhcCCEEEEEeccchhH
Confidence 589999988864 5578899999998744999998653221111 11100 11 112246799999999999877
Q ss_pred HHHHhcC
Q 002791 770 HASNLFR 776 (881)
Q Consensus 770 ~Aar~~~ 776 (881)
..-....
T Consensus 73 ~~~~~~~ 79 (150)
T PF08357_consen 73 RYDKKAD 79 (150)
T ss_pred HHHHhhc
Confidence 6655543
No 201
>PRK05637 anthranilate synthase component II; Provisional
Probab=50.33 E-value=28 Score=36.84 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=45.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~L 769 (881)
++|+||-..+.- ...++++|.+ .|+.+.+-+... +.+++ ..++|.||..||-|..-
T Consensus 2 ~~il~iD~~dsf----~~nl~~~l~~-~g~~~~v~~~~~------------------~~~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 2 THVVLIDNHDSF----VYNLVDAFAV-AGYKCTVFRNTV------------------PVEEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred CEEEEEECCcCH----HHHHHHHHHH-CCCcEEEEeCCC------------------CHHHHHhcCCCEEEEeCCCCCHH
Confidence 578888776542 3346667665 466655432210 01121 23578999999999885
Q ss_pred HHH---HhcC--CCCCcEEEEeCCC
Q 002791 770 HAS---NLFR--GAVPPVISFNLGS 789 (881)
Q Consensus 770 ~Aa---r~~~--~~~~PVLGIN~G~ 789 (881)
.+- ..+. ...+|||||-+|+
T Consensus 59 d~~~~~~li~~~~~~~PiLGIClG~ 83 (208)
T PRK05637 59 DAGNMMALIDRTLGQIPLLGICLGF 83 (208)
T ss_pred HhhHHHHHHHHHhCCCCEEEEcHHH
Confidence 541 2221 1379999999983
No 202
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=50.12 E-value=22 Score=40.19 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=51.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
.+++||.-+.-.....+.++.+.|++ .++++.+...+.. .|....+.... .. -...++|+||.||| |+.+-
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~----~p~~~~v~~~~--~~-~~~~~~D~IIaiGG-GS~~D 92 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEE-AGIEVQVFDGVGP----NPTLEDVDEAA--EQ-ARKFGADCIIAIGG-GSVMD 92 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHH-TTCEEEEEEEESS----S-BHHHHHHHH--HH-HHHTTSSEEEEEES-HHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhh-CceEEEEEecCCC----CCcHHHHHHHH--HH-HHhcCCCEEEEcCC-CCcCc
Confidence 49999997622334467889999976 5887755432211 11110000000 00 01347899999999 77887
Q ss_pred HHHhcC---CC-----------------CCcEEEEeC
Q 002791 771 ASNLFR---GA-----------------VPPVISFNL 787 (881)
Q Consensus 771 Aar~~~---~~-----------------~~PVLGIN~ 787 (881)
+++.+. .. .+|++.|.+
T Consensus 93 ~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 129 (366)
T PF00465_consen 93 AAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPT 129 (366)
T ss_dssp HHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEES
T ss_pred HHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeC
Confidence 777543 11 279999987
No 203
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=49.50 E-value=10 Score=44.81 Aligned_cols=19 Identities=32% Similarity=0.158 Sum_probs=15.9
Q ss_pred EEeCccCCChHHHHHHHHH
Q 002791 351 YLHSKEGVWRTYAMVSRWR 369 (881)
Q Consensus 351 LVHCtAGKDRTGaLaaLlr 369 (881)
.+.|++||||||+|=+-+.
T Consensus 460 ~wNCkSGKDRTGmmD~eiK 478 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEIK 478 (564)
T ss_pred eeccCCCCccccchHHHHH
Confidence 6899999999998766553
No 204
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=49.45 E-value=19 Score=41.59 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=43.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDGT~ 768 (881)
.++++||....-.....+.++.+.|++ .|+++.+...+. ..|....+... ... -..++|+||.||| |..
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~----~~P~~~~v~~~----~~~~r~~~~D~IiavGG-GS~ 118 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAV-KGIAMTLWPCPV----GEPCITDVCAA----VAQLRESGCDGVIAFGG-GSV 118 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCcCEEEEeCC-hHH
Confidence 478888876543334456788888876 588765533221 11111100000 000 1357999999999 777
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
|-+++.+
T Consensus 119 iD~AKai 125 (395)
T PRK15454 119 LDAAKAV 125 (395)
T ss_pred HHHHHHH
Confidence 7777653
No 205
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=49.31 E-value=43 Score=38.17 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=42.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||..+.-. .+.++.+.|.+ .|+++.+.. +. ..|....+... .... ..++|+||.||| |+.
T Consensus 22 ~~r~livtd~~~~---~~~~v~~~L~~-~g~~~~~~~-~~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 87 (374)
T cd08183 22 GRRVLLVTGASSL---RAAWLIEALRA-AGIEVTHVV-VA----GEPSVELVDAA----VAEARNAGCDVVIAIGG-GSV 87 (374)
T ss_pred CCcEEEEECCchH---HHHHHHHHHHH-cCCeEEEec-CC----CCcCHHHHHHH----HHHHHhcCCCEEEEecC-chH
Confidence 3799999865433 67788888876 577765432 10 11111101000 0011 347999999999 777
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
+-+++.+
T Consensus 88 ~D~aK~i 94 (374)
T cd08183 88 IDAGKAI 94 (374)
T ss_pred HHHHHHH
Confidence 7777654
No 206
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=49.23 E-value=29 Score=39.08 Aligned_cols=42 Identities=24% Similarity=0.186 Sum_probs=26.7
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEE
Q 002791 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIK 321 (881)
Q Consensus 278 eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIh 321 (881)
.+++.++++|.+||||..+... ...+....+..+.-|++.|-
T Consensus 42 ~El~~~k~~Gg~tiVd~T~~g~--GRd~~~l~~is~~tGv~II~ 83 (308)
T PF02126_consen 42 AELKEFKAAGGRTIVDATPIGL--GRDVEALREISRRTGVNIIA 83 (308)
T ss_dssp HHHHHHHHTTEEEEEE--SGGG--TB-HHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHcCCCEEEecCCccc--CcCHHHHHHHHHHhCCeEEE
Confidence 4678888899999999988652 12223455667777888765
No 207
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=49.16 E-value=29 Score=39.56 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=42.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.....+.++.+.|.+ .|+++.+...+. ..|....+... .+. ...++|+||.||| |..
T Consensus 26 ~~~~lvvt~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GS~ 95 (374)
T cd08189 26 VKKVLIVTDKGLVKLGLLDKVLEALEG-AGIEYAVYDGVP----PDPTIENVEAG----LALYRENGCDAILAVGG-GSV 95 (374)
T ss_pred CCeEEEEeCcchhhcccHHHHHHHHHh-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 479999986543222356778888876 577765432221 11111101000 000 1347899999999 777
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
+-+++.+
T Consensus 96 ~D~aK~i 102 (374)
T cd08189 96 IDCAKAI 102 (374)
T ss_pred HHHHHHH
Confidence 7777654
No 208
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=48.85 E-value=29 Score=39.32 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=40.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-. ....+.+.|.+ .++++.+-..+. ..|.+..+... .+.+ ..++|+||.||| |+.
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-Gs~ 89 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKP-LGTLVVVFDDVQ----PNPDLEDLAAG----IRLLREFGPDAVLAVGG-GSV 89 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHH-cCCeEEEEcCcC----CCcCHHHHHHH----HHHHHhcCcCEEEEeCC-cHH
Confidence 4789999765432 44567777765 466665432221 11111111000 0011 246899999998 788
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
+-+++.+
T Consensus 90 ~D~aK~i 96 (367)
T cd08182 90 LDTAKAL 96 (367)
T ss_pred HHHHHHH
Confidence 8877764
No 209
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=48.62 E-value=32 Score=38.67 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=50.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcc-chhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEP-DVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~-~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
++++||.-+.-... ...++.+.|.+ .++++.+.. +.. ..|....+... ...+.+++|+||.||| |+++
T Consensus 25 ~kvlivtd~~~~~~-~~~~i~~~L~~-~~~~~~i~~~~~~----~~p~~~~v~~~----~~~~~~~~d~IIaiGG-Gsv~ 93 (332)
T cd08549 25 SKIMIVCGNNTYKV-AGKEIIERLES-NNFTKEVLERDSL----LIPDEYELGEV----LIKLDKDTEFLLGIGS-GTII 93 (332)
T ss_pred CcEEEEECCcHHHH-HHHHHHHHHHH-cCCeEEEEecCCC----CCCCHHHHHHH----HHHhhcCCCEEEEECC-cHHH
Confidence 68999987654211 23778888876 466544311 111 01111111000 0112227999999999 8999
Q ss_pred HHHHhcCC-CCCcEEEEeC
Q 002791 770 HASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (881)
-+++.+.- ..+|++-|.+
T Consensus 94 D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 94 DLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 88887652 5789999987
No 210
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=48.44 E-value=37 Score=40.98 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=50.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCe----EEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKM----NILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~Gv----eV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGD 765 (881)
.-+|+||.|... .......+.+.|.. .|+ .|.+..-..+.+.. ... +...++|.||.-||=
T Consensus 289 ~v~IalVGKY~~-~~daY~SI~eAL~~-ag~~~~~~V~~~~i~se~i~~------------~~~-~~L~~~dGIiLpGG~ 353 (525)
T TIGR00337 289 EVTIGIVGKYVE-LKDSYLSVIEALKH-AGAKLDTKVNIKWIDSEDLEE------------EGA-EFLKGVDGILVPGGF 353 (525)
T ss_pred CcEEEEEeCCcC-CHHHHHHHHHHHHh-CccccCCEEEEEEecHHHhhh------------hhh-hhhcCCCEEEeCCCC
Confidence 359999999864 33334677788765 354 33332111111100 000 123458999999997
Q ss_pred hH-----HHHHHHhcCCCCCcEEEEeCC
Q 002791 766 GV-----ILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 766 GT-----~L~Aar~~~~~~~PVLGIN~G 788 (881)
|. .+.+++.+...++|++||-+|
T Consensus 354 G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 354 GERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred CChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 54 445777766689999999987
No 211
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=48.42 E-value=26 Score=39.44 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=49.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCe--EEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKM--NILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~Gv--eV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT 767 (881)
.++++||.-+.-.. ....++.+.|.+ .|+ .+++-+... ..|.+..+......-.+.-..+.|+||.||| |+
T Consensus 24 ~~~~livtd~~~~~-~~~~~l~~~L~~-~g~~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 24 GSKILIVTDENVAP-LYLEKLKAALEA-AGFEVEVIVIPAGE----ASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCC----CcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 47899998655322 456788888876 354 333322110 0011100000000000111234599999998 88
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002791 768 ILHASNLFR---GAVPPVISFNL 787 (881)
Q Consensus 768 ~L~Aar~~~---~~~~PVLGIN~ 787 (881)
++-++..++ ...+|++.|.+
T Consensus 97 v~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHHhcCCCeEEcch
Confidence 888887764 46889988876
No 212
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=47.65 E-value=31 Score=39.18 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=51.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~L 769 (881)
++++||.-..-. .....++.+.|.+ .|+++.+. .+. ..|....+... .+.+ ..++|+||.||| |+++
T Consensus 30 ~~~livtd~~~~-~~~~~~v~~~l~~-~~~~~~~~-~~~----~ep~~~~v~~~----~~~~~~~~~d~IIavGG-Gsv~ 97 (366)
T PRK09423 30 KRALVIADEFVL-GIVGDRVEASLKE-AGLTVVFE-VFN----GECSDNEIDRL----VAIAEENGCDVVIGIGG-GKTL 97 (366)
T ss_pred CEEEEEEChhHH-HHHHHHHHHHHHh-CCCeEEEE-EeC----CCCCHHHHHHH----HHHHHhcCCCEEEEecC-hHHH
Confidence 789999854422 2266788888876 57765322 110 11111101000 0011 246899999999 8999
Q ss_pred HHHHhcCC-CCCcEEEEeC
Q 002791 770 HASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (881)
-+++.+.. ..+|++.|-+
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 98887653 4789999987
No 213
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=46.98 E-value=27 Score=38.80 Aligned_cols=86 Identities=22% Similarity=0.236 Sum_probs=48.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.- ....++.+.|.+ . +++.+..... ..|.+..+... .+.+ ..++|+||.||| |++
T Consensus 23 ~~~~liv~~~~~~~-~~~~~v~~~l~~-~-~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 90 (332)
T cd07766 23 FDRALVVSDEGVVK-GVGEKVADSLKK-L-IAVHIFDGVG----PNPTFEEVKEA----VERARAAEVDAVIAVGG-GST 90 (332)
T ss_pred CCeEEEEeCCchhh-hHHHHHHHHHHh-c-CcEEEeCCcC----CCcCHHHHHHH----HHHHHhcCcCEEEEeCC-chH
Confidence 47899998544321 556677888865 2 3332211110 00111111100 0111 246899999998 899
Q ss_pred HHHHHhcCC---CCCcEEEEeC
Q 002791 769 LHASNLFRG---AVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~~---~~~PVLGIN~ 787 (881)
+-+++.+.. ..+|++.|-+
T Consensus 91 ~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 91 LDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 998887642 3899999986
No 214
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=46.90 E-value=28 Score=41.35 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=21.1
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
..++|++++|.+|. |+..++..+.. +|.
T Consensus 447 ~~~~~iivyC~~G~-rS~~aa~~L~~-~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQALYLRE-QGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HHHHHHHHHHH-cCC
Confidence 34679999999998 98877766654 453
No 215
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=46.60 E-value=45 Score=37.49 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=49.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCC-eEEEEccc-hhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEK-MNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~G-veV~vE~~-~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT 767 (881)
++++||.-..-.- ....++.+.|.+ .+ +.+++.++ ..+.+.. .. +.+ ..++|+||.||| |+
T Consensus 26 ~~~liv~d~~~~~-~~~~~v~~~l~~-~~~~~~~~~~~~~~~~v~~---------~~----~~~~~~~~d~iIaiGG-Gs 89 (339)
T cd08173 26 GRVLVVTGPTTKS-IAGKKVEALLED-EGEVDVVIVEDATYEEVEK---------VE----SSARDIGADFVIGVGG-GR 89 (339)
T ss_pred CeEEEEECCchHH-HHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHH---------HH----HHhhhcCCCEEEEeCC-ch
Confidence 6899998554321 456678888865 34 33333222 1111110 00 011 236899999998 89
Q ss_pred HHHHHHhcCC-CCCcEEEEeC
Q 002791 768 ILHASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 768 ~L~Aar~~~~-~~~PVLGIN~ 787 (881)
++-+++.+.- ..+|++-|.+
T Consensus 90 ~~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 90 VIDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHHhcCCCEEEecC
Confidence 9999887653 5789999986
No 216
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=46.34 E-value=47 Score=34.46 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.4
Q ss_pred CCccEEEEEcCchHHH----------HHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVIL----------HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L----------~Aar~~~~~~~PVLGIN~G~ 789 (881)
.++|.||.-||-++.. ...+.+...++||+||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 3589999999988863 23333334689999999885
No 217
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=46.33 E-value=51 Score=34.17 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=27.1
Q ss_pred CCccEEEEEcCchHHHH----------HHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVILH----------ASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~----------Aar~~~~~~~PVLGIN~G~ 789 (881)
+++|.||.-||-++... ..+.+...++||+||-.|.
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHH
Confidence 46899999999887632 2444556789999999875
No 218
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=46.00 E-value=44 Score=38.72 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=49.4
Q ss_pred CcEEEEEecCCh-hH-HHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCcc---ceeeeccCccccCCCccEEEEEcC
Q 002791 690 PRTVLVLKKPGP-AL-MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGF---VQTFYLQDTSDLHERVDFVACLGG 764 (881)
Q Consensus 690 pkkVlIV~K~~~-ea-~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~---v~~f~~~~~~dl~~~~DlVIvLGG 764 (881)
.++++||..+.- +. ...+.++.+.|.+ .|+++.+...+....+.....+. +......-.+.-.++.|+||.|||
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~-~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG 120 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAA-HADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG 120 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHh-cCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC
Confidence 479999995542 22 2456788888865 46543211111000000000000 000000000111245679999998
Q ss_pred chHHHHHHHhcC---CCCCcEEEEeC
Q 002791 765 DGVILHASNLFR---GAVPPVISFNL 787 (881)
Q Consensus 765 DGT~L~Aar~~~---~~~~PVLGIN~ 787 (881)
|+++-++..++ ..++|++-|.+
T Consensus 121 -Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 121 -GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred -cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 88888877663 35789988876
No 219
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=45.74 E-value=26 Score=35.63 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=25.5
Q ss_pred CccEEEEEcCchH------HHHHHHhcCCCCCcEEEEeCC
Q 002791 755 RVDFVACLGGDGV------ILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 755 ~~DlVIvLGGDGT------~L~Aar~~~~~~~PVLGIN~G 788 (881)
+.|.||..||-|. .+..++.+...++||+||-.|
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G 78 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLG 78 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHH
Confidence 5799999999654 344555555578999999986
No 220
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=45.55 E-value=1.4e+02 Score=34.65 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=68.4
Q ss_pred ccccCCcEEEEEecCChh-HHHHHHHHHHHHhcCCCeEEEEccchhhh-hhcCCCCccceeeeccCccccCCCccEEEEE
Q 002791 685 MWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDI-FARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (881)
Q Consensus 685 ~W~~~pkkVlIV~K~~~e-a~e~a~eL~~~L~~~~GveV~vE~~~~~~-l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvL 762 (881)
.|...-+.+..+.=.... ..++.+.+.+-+.. .+..|++-.--.+. ....|.- +....-.+..++...+|++|+=
T Consensus 231 ~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~-l~~~vi~~~~~~~~~~~~~p~n--~~v~~~~p~~~~l~~ad~vI~h 307 (406)
T COG1819 231 YWIPADRPIVYVSLGTVGNAVELLAIVLEALAD-LDVRVIVSLGGARDTLVNVPDN--VIVADYVPQLELLPRADAVIHH 307 (406)
T ss_pred chhcCCCCeEEEEcCCcccHHHHHHHHHHHHhc-CCcEEEEeccccccccccCCCc--eEEecCCCHHHHhhhcCEEEec
Confidence 343344455555443322 25667777777765 57666653321111 1111211 1111112334567889999999
Q ss_pred cCchHHHHHHHhcCCCCCcEEEEeCC-------------CcccccC---CCcccHHHHHHHHHcCC
Q 002791 763 GGDGVILHASNLFRGAVPPVISFNLG-------------SLGFLTS---HPFEDYRQDLRQVIYGN 812 (881)
Q Consensus 763 GGDGT~L~Aar~~~~~~~PVLGIN~G-------------~LGFLt~---~~~edl~~~L~~Il~G~ 812 (881)
||=||+..+.+ .++|++.+-.+ ..|..-. .+.+.+.++|++++...
T Consensus 308 GG~gtt~eaL~----~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 308 GGAGTTSEALY----AGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred CCcchHHHHHH----cCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 99999999976 48899988654 2332222 45566777777777654
No 221
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=45.27 E-value=47 Score=37.44 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=17.5
Q ss_pred cEEEeCc-cCCChHHHHHHHHHHHcCC
Q 002791 349 PLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 349 PVLVHCt-AGKDRTGaLaaLlr~l~Gv 374 (881)
.|+++|. .|. |++.++.++.. +|.
T Consensus 76 ~vvvyC~~gG~-RS~~aa~~L~~-~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLAWLLAQ-IGF 100 (311)
T ss_pred cEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 4999995 666 99987776654 564
No 222
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=45.22 E-value=25 Score=39.48 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=50.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||.-..-.-. ...++.+.|.+ .++.++-+-. ..|....+... .+.+ ..++|+||.||| |++
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~-~~~~~~~~~~------~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGD-RVAGTFDGAV------MHTPVEVTEAA----VAAAREAGADGIVAIGG-GST 89 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhcc-CCcEEeCCCC------CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 468999986543222 66788888865 3554432110 01111000000 0011 257899999998 899
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002791 769 LHASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~~-~~~PVLGIN~ 787 (881)
+-+++.+.- ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 90 IDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHhcCCEEEEcC
Confidence 999987653 4789999876
No 223
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=45.21 E-value=19 Score=36.53 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCCccEEEEEcCc------hHHHHHHHhcCCCCCcEEEEeCCC
Q 002791 753 HERVDFVACLGGD------GVILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 753 ~~~~DlVIvLGGD------GT~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
..+.|.||+.||= +..+...+.+....+|||||-+|+
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 4678999999994 455566666666799999999884
No 224
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=44.99 E-value=17 Score=45.45 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=38.6
Q ss_pred CCccEEEEEcCchHHHHHHHhcC----------------------CCCCcEEEEeC-------C---CcccccCCCcccH
Q 002791 754 ERVDFVACLGGDGVILHASNLFR----------------------GAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~----------------------~~~~PVLGIN~-------G---~LGFLt~~~~edl 801 (881)
.++|.+|+||||||+=.|..+.. ...+||+||-- | ++||-|..+ -+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~--~i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALH--RI 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHH--HH
Confidence 47899999999999877653221 24889999943 3 688888643 35
Q ss_pred HHHHHHHHc
Q 002791 802 RQDLRQVIY 810 (881)
Q Consensus 802 ~~~L~~Il~ 810 (881)
-++++++..
T Consensus 171 ~~aid~i~~ 179 (745)
T TIGR02478 171 CEAIDAISS 179 (745)
T ss_pred HHHHHHHHh
Confidence 566666654
No 225
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=44.95 E-value=23 Score=41.01 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=49.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDGT~ 768 (881)
.++++||+-++-.....+.++.+.|.+ .++++.+..++. ..|....+.. -.+. -..++|+||.||| |..
T Consensus 29 ~~r~liVTd~~~~~~g~~~~v~~~L~~-~~i~~~if~~v~----p~P~~~~v~~----~~~~~~~~~~D~iIalGG-GS~ 98 (377)
T COG1454 29 AKRALIVTDRGLAKLGLLDKVLDSLDA-AGIEYEVFDEVE----PEPTIETVEA----GAEVAREFGPDTIIALGG-GSV 98 (377)
T ss_pred CCceEEEECCccccchhHHHHHHHHHh-cCCeEEEecCCC----CCCCHHHHHH----HHHHHHhcCCCEEEEeCC-ccH
Confidence 479999999886667788999999987 587776654432 1121111100 0011 1357999999999 777
Q ss_pred HHHHHhc
Q 002791 769 LHASNLF 775 (881)
Q Consensus 769 L~Aar~~ 775 (881)
+-+++.+
T Consensus 99 ~D~AK~i 105 (377)
T COG1454 99 IDAAKAI 105 (377)
T ss_pred HHHHHHH
Confidence 7777654
No 226
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=44.87 E-value=46 Score=38.09 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002791 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (881)
Q Consensus 275 pT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHC 354 (881)
++.+++..+.+.+ -.|||.|+++ + |. .-...| -+++|.. .+.+....+....+++|+++|
T Consensus 5 is~~el~~~l~~~-~~ivDvR~~~-e---~~-----~ghIpg--Ai~ip~~--------~l~~~~~~~~~~~~~~IvvyC 64 (376)
T PRK08762 5 ISPAEARARAAQG-AVLIDVREAH-E---RA-----SGQAEG--ALRIPRG--------FLELRIETHLPDRDREIVLIC 64 (376)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----CCcCCC--CEECCHH--------HHHHHHhhhcCCCCCeEEEEc
Confidence 5677777776667 4799999864 1 11 011122 2444432 233333322124578999999
Q ss_pred ccCCChHHHHHHHHHHHcCC
Q 002791 355 KEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 355 tAGKDRTGaLaaLlr~l~Gv 374 (881)
..|. |+..++.+++ ..|.
T Consensus 65 ~~G~-rs~~aa~~L~-~~G~ 82 (376)
T PRK08762 65 ASGT-RSAHAAATLR-ELGY 82 (376)
T ss_pred CCCc-HHHHHHHHHH-HcCC
Confidence 9987 7765544443 3454
No 227
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=44.87 E-value=94 Score=34.08 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=53.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccc-----hhhhhhcCCCCccceeeeccCcccc-CCCccEEEEE
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPD-----VHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACL 762 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~-----~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvL 762 (881)
..++++||.-... -....+++.+.|+. .|+++.+-.. ..+.+..+ ...+ ..++|++|.+
T Consensus 18 ~~~~~lvv~d~~t-~~~~g~~v~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~ii~v 82 (250)
T PF13685_consen 18 GLKKVLVVTDENT-YKAAGEKVEESLKS-AGIEVAVIEEFVGDADEDEVEKL-------------VEALRPKDADLIIGV 82 (250)
T ss_dssp T-SEEEEEEETTH-HHHHHHHHHHHHHT-TT-EEEEEE-EE---BHHHHHHH-------------HTTS--TT--EEEEE
T ss_pred CCCcEEEEEcCCH-HHHHHHHHHHHHHH-cCCeEEEEecCCCCCCHHHHHHH-------------HHHhcccCCCEEEEe
Confidence 4579999998763 11234567777876 5877753210 11111100 1122 3578999999
Q ss_pred cCchHHHHHHHhcCC-CCCcEEEEeC--CCcccccC
Q 002791 763 GGDGVILHASNLFRG-AVPPVISFNL--GSLGFLTS 795 (881)
Q Consensus 763 GGDGT~L~Aar~~~~-~~~PVLGIN~--G~LGFLt~ 795 (881)
|| ||+.-.++.... .++|++.|-+ -+=||-++
T Consensus 83 Gg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~ 117 (250)
T PF13685_consen 83 GG-GTIIDIAKYAAFELGIPFISVPTAASHDGFASP 117 (250)
T ss_dssp ES-HHHHHHHHHHHHHHT--EEEEES--SSGGGTSS
T ss_pred CC-cHHHHHHHHHHHhcCCCEEEeccccccccccCC
Confidence 99 999999998774 6999999976 56666555
No 228
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=44.53 E-value=1.4e+02 Score=31.56 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=51.0
Q ss_pred hhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeC
Q 002791 278 EGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHS 354 (881)
Q Consensus 278 eDL~~LkelGIKTIIDLRsee~--Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~-~PVLVHC 354 (881)
+-++.+++.|++..+++-.... ..+.+.....+.+...|+..+.++-. ....+++++.+++..+.+..+ .|+-+||
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4466778889999999943331 11111112334556789998887655 446788888888887754333 6777766
Q ss_pred ccCC
Q 002791 355 KEGV 358 (881)
Q Consensus 355 tAGK 358 (881)
+--.
T Consensus 198 Hn~~ 201 (265)
T cd03174 198 HNTL 201 (265)
T ss_pred CCCC
Confidence 5544
No 229
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=44.12 E-value=60 Score=37.27 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=42.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
++++||....-.......++.+.|.+ .|+++.+-..+.. .+....+... .. .-...++|+||.||| |.++-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~~~v~~~--~~-~~~~~~~D~IIaiGG-GS~iD 93 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA-AGVEVEVFDGVLP----DLPRSELCDA--AS-AAARAGPDVIIGLGG-GSCID 93 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH--HH-HHHhcCCCEEEEeCC-chHHH
Confidence 78999985442223566778888876 5776654322210 0000000000 00 001357899999999 88888
Q ss_pred HHHhcC
Q 002791 771 ASNLFR 776 (881)
Q Consensus 771 Aar~~~ 776 (881)
+++.+.
T Consensus 94 ~aK~ia 99 (386)
T cd08191 94 LAKIAG 99 (386)
T ss_pred HHHHHH
Confidence 877653
No 230
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=43.73 E-value=20 Score=47.22 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=32.7
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCC
Q 002791 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSH 796 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~-----~~~~PVLGIN~-------G-----~LGFLt~~ 796 (881)
-++|.+|+||||||+-.|..+.. +..++|+||-- | ++||=|..
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~ 254 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAV 254 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHH
Confidence 36899999999999988877543 35699999943 3 56776653
No 231
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=43.26 E-value=46 Score=39.90 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=29.0
Q ss_pred ccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002791 756 VDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 756 ~DlVIvLGGDGT-----~L~Aar~~~~~~~PVLGIN~G 788 (881)
+|-|++-||=|. -+.|++.....++|+|||-+|
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClG 381 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLG 381 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchh
Confidence 899999999774 567888888899999999997
No 232
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=42.36 E-value=68 Score=34.03 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=24.4
Q ss_pred CccEEEEEcCchHHH------------HHHHhcCCCCCcEEEEeCCCccc
Q 002791 755 RVDFVACLGGDGVIL------------HASNLFRGAVPPVISFNLGSLGF 792 (881)
Q Consensus 755 ~~DlVIvLGGDGT~L------------~Aar~~~~~~~PVLGIN~G~LGF 792 (881)
.+|.|| ++|-|.+- ...+.+.....|||||=+|.=-+
T Consensus 39 ~~d~iI-lPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll 87 (210)
T CHL00188 39 QVHALV-LPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLL 87 (210)
T ss_pred hCCEEE-ECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHH
Confidence 478877 67766532 33343334689999999997544
No 233
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.96 E-value=43 Score=34.63 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCccEEEEEcCchH------------HHHHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGV------------ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT------------~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
.++|.+|. +|-|. +....+.+...+.|||||-.|.
T Consensus 36 ~~~d~lil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 36 AGADKVIL-PGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 35798875 55333 2233443345689999999883
No 234
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=41.93 E-value=52 Score=38.00 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=46.0
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002791 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (881)
Q Consensus 274 qpT~eDL~~LkelGI-KTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLV 352 (881)
.++++++..+.+.+- -.|||.|++. + +. .....| -+++|+.... ..+. +..+ ..++|+++
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~-e---f~-----~ghIpG--Ainip~~~l~--~~~~----~~~l--~~d~~iVv 348 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPV-E---WD-----IVHIPG--AQLIPKSEIL--SGEA----LAKL--PQDRTIVL 348 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHH-H---Hh-----cCCCCC--CEEcChHHhc--chhH----HhhC--CCCCcEEE
Confidence 568888888776653 3699999865 1 11 111223 3566664211 1111 1122 35789999
Q ss_pred eCccCCChHHHHHHHHHHHcCC
Q 002791 353 HSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 353 HCtAGKDRTGaLaaLlr~l~Gv 374 (881)
+|..|. |+...+..++. .|.
T Consensus 349 yC~~G~-rS~~aa~~L~~-~G~ 368 (392)
T PRK07878 349 YCKTGV-RSAEALAALKK-AGF 368 (392)
T ss_pred EcCCCh-HHHHHHHHHHH-cCC
Confidence 999997 87655554443 454
No 235
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=41.72 E-value=53 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=18.9
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHH
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~ 370 (881)
..+.+|+++|..|. |+..++..++.
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~~~~l~~ 72 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARAAKLLRK 72 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHH
Confidence 46789999999987 77766655554
No 236
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=41.70 E-value=77 Score=31.25 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=29.7
Q ss_pred CccEEEEEcCchH--------HHHHHHhcCCCCCcEEEEeCCC-----cccccC
Q 002791 755 RVDFVACLGGDGV--------ILHASNLFRGAVPPVISFNLGS-----LGFLTS 795 (881)
Q Consensus 755 ~~DlVIvLGGDGT--------~L~Aar~~~~~~~PVLGIN~G~-----LGFLt~ 795 (881)
+.|.||+.||.|. ++...+.+.....||.+|-.|. .|.|..
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g 113 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRG 113 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCC
Confidence 5799999999763 3444455556789999999875 455544
No 237
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=41.30 E-value=74 Score=33.22 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=55.5
Q ss_pred EEEEEecCC----hhH-HHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002791 692 TVLVLKKPG----PAL-MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (881)
Q Consensus 692 kVlIV~K~~----~ea-~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDG 766 (881)
|||||.+.. ... ......+.+.|.+..+++|.+..+.. .+ ..+.+ .++|+||.....|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~-~~---------------~~~~L-~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPD-DL---------------TPENL-KGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGG-CT---------------SHHCH-CT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcc-cC---------------ChhHh-cCCCEEEEECCCC
Confidence 689999883 122 23445555666535789998765521 11 11223 5799999998887
Q ss_pred H-----HHHHHHhcCCCCCcEEEEe-CCCcccccCCCcccHHHHHHHHHcCCC
Q 002791 767 V-----ILHASNLFRGAVPPVISFN-LGSLGFLTSHPFEDYRQDLRQVIYGNN 813 (881)
Q Consensus 767 T-----~L~Aar~~~~~~~PVLGIN-~G~LGFLt~~~~edl~~~L~~Il~G~y 813 (881)
+ -..+.+.+...+.+++||+ .+...|- +. ....+++-|.|
T Consensus 64 ~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~------~~-~~~~~l~Gg~f 109 (217)
T PF06283_consen 64 DELTDEQRAALRDYVENGGGLVGLHGAATDSFP------DW-PEYNELLGGYF 109 (217)
T ss_dssp CGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT------T--HHHHHHHS--S
T ss_pred CcCCHHHHHHHHHHHHcCCCEEEEcccccccch------hH-HHHHHeeCccc
Confidence 4 3445555666899999999 5555663 22 34444776765
No 238
>PTZ00287 6-phosphofructokinase; Provisional
Probab=40.65 E-value=22 Score=47.21 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=37.2
Q ss_pred CccEEEEEcCchHHHHHHHhcC---CCCCc--EEEEeC-------C-----CcccccCCCcccHHHHHHHHH
Q 002791 755 RVDFVACLGGDGVILHASNLFR---GAVPP--VISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (881)
Q Consensus 755 ~~DlVIvLGGDGT~L~Aar~~~---~~~~P--VLGIN~-------G-----~LGFLt~~~~edl~~~L~~Il 809 (881)
++|.+|+||||||+=.|..+.. ..++| |+||-. | ++||=|... -+-++|++|.
T Consensus 928 ~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~--~~seaI~nL~ 997 (1419)
T PTZ00287 928 QLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK--VYASLIGNVL 997 (1419)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 7899999999999988877643 24566 999954 3 667766533 3445566654
No 239
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=40.36 E-value=76 Score=34.28 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT-----~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
..+|.||.-||-|+ .+.+.+.....++|+|||-+|.
T Consensus 54 ~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~ 94 (235)
T cd01746 54 KGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGM 94 (235)
T ss_pred ccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHH
Confidence 56788888888532 2334455455789999999873
No 240
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.13 E-value=38 Score=38.73 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=41.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++++||....-.......++.+.|.+ .|+++.+..++. ..|....+... .+.. ..++|+||.||| |.+
T Consensus 28 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gsv 97 (377)
T cd08188 28 AKKVLLVSDPGVIKAGWVDRVIESLEE-AGLEYVVFSDVS----PNPRDEEVMAG----AELYLENGCDVIIAVGG-GSP 97 (377)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 479999986542222346678888875 476654432221 01111000000 0011 357899999999 777
Q ss_pred HHHHHh
Q 002791 769 LHASNL 774 (881)
Q Consensus 769 L~Aar~ 774 (881)
+-+++.
T Consensus 98 iD~AK~ 103 (377)
T cd08188 98 IDCAKG 103 (377)
T ss_pred HHHHHH
Confidence 777754
No 241
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=39.87 E-value=97 Score=32.24 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=42.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc--hH--
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD--GV-- 767 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGD--GT-- 767 (881)
+|+||-..... ...+.++|.+ .|.++.+... ..++ .++|.+|.-||- +.
T Consensus 2 ~~~v~~~~~~~----~~~~~~~l~~-~G~~~~~~~~---------------------~~~~-~~~d~iii~G~~~~~~~~ 54 (200)
T PRK13143 2 MIVIIDYGVGN----LRSVSKALER-AGAEVVITSD---------------------PEEI-LDADGIVLPGVGAFGAAM 54 (200)
T ss_pred eEEEEECCCcc----HHHHHHHHHH-CCCeEEEECC---------------------HHHH-ccCCEEEECCCCCHHHHH
Confidence 67777766544 3556677766 5777655321 0122 357888886642 22
Q ss_pred -----HHHHHHhcCCCCCcEEEEeCCC
Q 002791 768 -----ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 768 -----~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+...++.+...++||+||-.|.
T Consensus 55 ~~~~~~~~~i~~~~~~~~PilgIC~G~ 81 (200)
T PRK13143 55 ENLSPLRDVILEAARSGKPFLGICLGM 81 (200)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 2344455556789999998874
No 242
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=38.87 E-value=36 Score=38.65 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=38.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
++++||..+.-.......++.+.|.. ..+.++ ..+. ..|....+...... ..+...++|+||.||| |+++-
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~-~~~~~~--~~v~----~~pt~~~v~~~~~~-~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGG-RLAALI--DDVA----PNPDVAQLDGLYAR-LWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhcc-CcEEEe--CCCC----CCcCHHHHHHHHHH-HHhcCCCCCEEEEeCC-ccHHH
Confidence 79999996543333556778888854 233332 1110 01111000000000 0011134999999999 77777
Q ss_pred HHHhc
Q 002791 771 ASNLF 775 (881)
Q Consensus 771 Aar~~ 775 (881)
+++.+
T Consensus 95 ~aK~i 99 (355)
T TIGR03405 95 TAKVL 99 (355)
T ss_pred HHHHH
Confidence 77653
No 243
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=38.65 E-value=27 Score=43.97 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=66.1
Q ss_pred CCcEEEEEecCCh-hHH-HHHHHHHHHHhcCCCeEEEEccchhh-hhhc-----------------CCC----Cccceee
Q 002791 689 TPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKMNILVEPDVHD-IFAR-----------------IPG----FGFVQTF 744 (881)
Q Consensus 689 ~pkkVlIV~K~~~-ea~-e~a~eL~~~L~~~~GveV~vE~~~~~-~l~~-----------------~p~----~~~v~~f 744 (881)
+.++|+|+.--++ +-+ ..++.++..... .|++||.-.+=.+ .+.. .++ ......|
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~-~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~f 80 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY-VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKEF 80 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH-CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCcc
Confidence 3579999998887 433 445667766554 5888875443211 1111 011 0001111
Q ss_pred eccC-----cccc-CCCccEEEEEcCchHHHHHHHhc----------------------CCCCCcEEEEeC-------C-
Q 002791 745 YLQD-----TSDL-HERVDFVACLGGDGVILHASNLF----------------------RGAVPPVISFNL-------G- 788 (881)
Q Consensus 745 ~~~~-----~~dl-~~~~DlVIvLGGDGT~L~Aar~~----------------------~~~~~PVLGIN~-------G- 788 (881)
...+ ...+ ..++|.+|+||||||+=.|..+. ....++|+||-- |
T Consensus 81 ~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gT 160 (762)
T cd00764 81 REREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGT 160 (762)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCC
Confidence 1000 0001 24789999999999987765321 123689999843 3
Q ss_pred --CcccccCCCcccHHHHHHHHHc
Q 002791 789 --SLGFLTSHPFEDYRQDLRQVIY 810 (881)
Q Consensus 789 --~LGFLt~~~~edl~~~L~~Il~ 810 (881)
++||-|..+ -+-++++++..
T Consensus 161 D~TiGfdTAl~--~i~eaId~i~~ 182 (762)
T cd00764 161 DMTIGTDSALH--RICEVVDAITT 182 (762)
T ss_pred cCCCCHHHHHH--HHHHHHHHHHH
Confidence 688888744 35556666643
No 244
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=38.64 E-value=30 Score=44.66 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHhhcCCCcccee----eeeccCCCCCCCcccceeehhhh--HHHhhh---cCCc
Q 002791 112 MDTLCNPLTGECT----VSYEFTPEEKPLLEDKIVSVLGC--MLSLLN---KGRE 157 (881)
Q Consensus 112 ~~~~~~~~~~ec~----v~~~~~~~~~~~led~ii~~~~~--~~~~ln---~g~~ 157 (881)
..+||=+-+|+|+ --|-|+.|...|-.....+.|.. -+..+| +|+.
T Consensus 679 iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPi 733 (1087)
T KOG4228|consen 679 IRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPI 733 (1087)
T ss_pred EEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCE
Confidence 3578888889998 44889999988888888888877 344444 5666
No 245
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=38.53 E-value=1e+02 Score=34.70 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=38.8
Q ss_pred ccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCC-----------C--ccc-c--cCCCcccHHHHHHHHHcC
Q 002791 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-----------S--LGF-L--TSHPFEDYRQDLRQVIYG 811 (881)
Q Consensus 751 dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G-----------~--LGF-L--t~~~~edl~~~L~~Il~G 811 (881)
++...+|++|+=||-||++.++. .++|++.+-.+ . .|. | .+++.+++.++|++++..
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~----~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~ 359 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALF----NGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD 359 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHH----hCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC
Confidence 44567999999999999999876 47899887542 1 111 1 134456677777777654
No 246
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=38.39 E-value=49 Score=37.28 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=50.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
-++++||.-..-. .....++.+.|.+ .++.+.+-... |....+... .+.+ ..++|+||.||| |++
T Consensus 23 ~~~~liv~d~~~~-~~~~~~l~~~L~~-~~~~~~~~~~~-------p~~~~v~~~----~~~~~~~~~D~iIavGG-Gs~ 88 (347)
T cd08172 23 GKRPLIVTGPRSW-AAAKPYLPESLAA-GEAFVLRYDGE-------CSEENIERL----AAQAKENGADVIIGIGG-GKV 88 (347)
T ss_pred CCeEEEEECHHHH-HHHHHHHHHHHhc-CeEEEEEeCCC-------CCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 3788998865531 2345677777743 45554332221 111101000 0111 246899999999 899
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002791 769 LHASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~~~-~~~PVLGIN~ 787 (881)
+-+++.+.. ..+|++.|.+
T Consensus 89 ~D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 89 LDTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHHhCCCEEEecC
Confidence 999988753 4789999986
No 247
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=38.27 E-value=74 Score=35.04 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=49.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcC----c-
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG----D- 765 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGG----D- 765 (881)
++|+|+.-++-.... ++.+.|++ .|+++.+-.- .+.. +.....+++|.+|..|| |
T Consensus 4 ~kvaVl~~pG~n~d~---e~~~Al~~-aG~~v~~v~~-~~~~---------------~~~~~l~~~DgLvipGGfs~gD~ 63 (261)
T PRK01175 4 IRVAVLRMEGTNCED---ETVKAFRR-LGVEPEYVHI-NDLA---------------AERKSVSDYDCLVIPGGFSAGDY 63 (261)
T ss_pred CEEEEEeCCCCCCHH---HHHHHHHH-CCCcEEEEee-cccc---------------ccccchhhCCEEEECCCCCcccc
Confidence 489999988864222 33455554 4766543211 0000 00111356899999999 2
Q ss_pred ---hH---------HHHHHHhcCCCCCcEEEEeCC-----Cccccc
Q 002791 766 ---GV---------ILHASNLFRGAVPPVISFNLG-----SLGFLT 794 (881)
Q Consensus 766 ---GT---------~L~Aar~~~~~~~PVLGIN~G-----~LGFLt 794 (881)
|. +..+++.+...+.||+||-.| .+|.|-
T Consensus 64 l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLp 109 (261)
T PRK01175 64 IRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLP 109 (261)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCC
Confidence 11 124556666789999999876 477773
No 248
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=37.94 E-value=75 Score=35.61 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=46.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDGT~ 768 (881)
.++++||..+.-.-.....++.+.|.+ . +++.+..++. ..|....+... .+. ...++|+||.||| |.+
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~-~-~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 90 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDS-S-IEVEIFSDVV----PDPPIEVVAKG----IKKFLDFKPDIVIALGG-GSA 90 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHh-c-CcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEECC-chH
Confidence 378999985432222356678888865 2 4443222211 11111100000 000 1346899999999 777
Q ss_pred HHHHHhc----C----CCCCcEEEEeC
Q 002791 769 LHASNLF----R----GAVPPVISFNL 787 (881)
Q Consensus 769 L~Aar~~----~----~~~~PVLGIN~ 787 (881)
+-+++.+ . ...+|++.|.+
T Consensus 91 ~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 91 IDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 7777632 1 23579999876
No 249
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.59 E-value=29 Score=39.05 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=27.8
Q ss_pred ccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCC
Q 002791 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 751 dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G 788 (881)
++.+.++++|++|-|=|-+-+ ..+...++||+||--|
T Consensus 262 el~~~~~lvvTvGDDTT~vag-dIl~RfgipiiGItDg 298 (367)
T COG4069 262 ELIEGAGLVVTVGDDTTEVAG-DILYRFGIPIIGITDG 298 (367)
T ss_pred HhhccCceEEEEcCcchhHHH-HHHHhcCCcEEecccC
Confidence 345678899999999887755 4444579999998654
No 250
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=36.49 E-value=32 Score=39.61 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=46.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH-
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV- 767 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT- 767 (881)
.++|+|+=---+ ..++++|.+ .|..+.+-+... +.+++ ..++|.||.-||.|.
T Consensus 177 ~~~I~viD~G~k------~nivr~L~~-~G~~v~vvp~~~------------------~~~~i~~~~~DGIvLSgGPgdp 231 (360)
T PRK12564 177 KYKVVAIDFGVK------RNILRELAE-RGCRVTVVPATT------------------TAEEILALNPDGVFLSNGPGDP 231 (360)
T ss_pred CCEEEEEeCCcH------HHHHHHHHH-CCCEEEEEeCCC------------------CHHHHHhcCCCEEEEeCCCCCh
Confidence 357888764322 347888876 588876643210 01111 125888888899765
Q ss_pred -----HHHHHHhcCCCCCcEEEEeCCC
Q 002791 768 -----ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 768 -----~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
.+..++.+...++||+||-+|+
T Consensus 232 ~~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 232 AALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 3344555555689999999984
No 251
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.11 E-value=1.7e+02 Score=31.81 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=42.3
Q ss_pred cccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-----------------CCcccccCC---CcccHHHHHHHHH
Q 002791 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-----------------GSLGFLTSH---PFEDYRQDLRQVI 809 (881)
Q Consensus 750 ~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~-----------------G~LGFLt~~---~~edl~~~L~~Il 809 (881)
.++...+|++|+-+|-+|++.|.. .++|++.+.. +..|++.+. +.+++.++|+.++
T Consensus 247 ~~~l~~ad~~v~~sg~~t~~Eam~----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 247 AAAYAAADLVISRAGASTVAELAA----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred HHHHHhcCEEEECCCHhHHHHHHH----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 344567999999888677777764 5789997643 235777764 5788888898887
Q ss_pred cC
Q 002791 810 YG 811 (881)
Q Consensus 810 ~G 811 (881)
..
T Consensus 323 ~~ 324 (350)
T cd03785 323 SD 324 (350)
T ss_pred cC
Confidence 64
No 252
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.97 E-value=2.5e+02 Score=30.42 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=51.9
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCC-cEEEeCc
Q 002791 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSK 355 (881)
Q Consensus 277 ~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~-PVLVHCt 355 (881)
.+-++..++.|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++..+++.+....+. |+-+||+
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS-AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 4457777888999999983322111111112233456678888887544 5567889998888887654454 8888776
Q ss_pred cCC
Q 002791 356 EGV 358 (881)
Q Consensus 356 AGK 358 (881)
--.
T Consensus 194 n~~ 196 (263)
T cd07943 194 NNL 196 (263)
T ss_pred CCc
Confidence 554
No 253
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=35.36 E-value=67 Score=28.85 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.3
Q ss_pred CCCcEEEeCccCCChH
Q 002791 346 SKKPLYLHSKEGVWRT 361 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRT 361 (881)
.+.||+++|..|. |.
T Consensus 49 ~~~~ivl~c~~G~-~~ 63 (92)
T cd01532 49 RDTPIVVYGEGGG-ED 63 (92)
T ss_pred CCCeEEEEeCCCC-ch
Confidence 4679999999998 53
No 254
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=35.15 E-value=76 Score=36.25 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EccchhhhhhcCCCCccceeeecc-CccccCCCccEEEEEcCc
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGD 765 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~--vE~~~~~~l~~~p~~~~v~~f~~~-~~~dl~~~~DlVIvLGGD 765 (881)
.+++++||.-..-. .....++.+.|.+ .|+++. +-+.... .+.+..+...... .......++|+||.+||
T Consensus 25 ~~~~~lvVtd~~v~-~~~~~~v~~~l~~-~g~~~~~~v~~~~e~----~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG- 97 (354)
T cd08199 25 GSGRRFVVVDQNVD-KLYGKKLREYFAH-HNIPLTILVLRAGEA----AKTMDTVLKIVDALDAFGISRRREPVLAIGG- 97 (354)
T ss_pred CCCeEEEEECccHH-HHHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-
Confidence 56899999855432 1244678888865 466443 2221100 0110000000000 00011223499999998
Q ss_pred hHHHHHHHhcC---CCCCcEEEEeC
Q 002791 766 GVILHASNLFR---GAVPPVISFNL 787 (881)
Q Consensus 766 GT~L~Aar~~~---~~~~PVLGIN~ 787 (881)
|+++-+++.++ ..++|++-|.+
T Consensus 98 G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 98 GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 88888888765 56888888876
No 255
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=35.11 E-value=61 Score=36.60 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=49.6
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEE--EE-ccc-hhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCc
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNI--LV-EPD-VHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD 765 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV--~v-E~~-~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGD 765 (881)
++++||.-..- ......++.+.|.+ .|+.+ .+ ..+ ..+.+. .. .... ..++|+||.|||
T Consensus 23 ~~~liv~~~~~-~~~~~~~v~~~l~~-~~i~~~~~~~~~~p~~~~v~---------~~----~~~~~~~~~d~IIavGG- 86 (349)
T cd08550 23 SKVAVVGGKTV-LKKSRPRFEAALAK-SIIVVDVIVFGGECSTEEVV---------KA----LCGAEEQEADVIIGVGG- 86 (349)
T ss_pred CeEEEEEChHH-HHHHHHHHHHHHHh-cCCeeEEEEcCCCCCHHHHH---------HH----HHHHHhcCCCEEEEecC-
Confidence 68888885442 12446788888876 46532 22 111 111110 00 0011 247899999999
Q ss_pred hHHHHHHHhcCC-CCCcEEEEeC
Q 002791 766 GVILHASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 766 GT~L~Aar~~~~-~~~PVLGIN~ 787 (881)
|+++-+++.+.. ..+|++.|.+
T Consensus 87 Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 87 GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCC
Confidence 899999988753 5789999987
No 256
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=34.99 E-value=53 Score=35.93 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002791 331 TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 331 s~E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
+.+.+++++.-.--..++||+++|..|. |+..++.++. .+|..
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~-~~G~~ 257 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALA-TLDVP 257 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 4566666554321245679999999999 8876655554 46754
No 257
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=34.73 E-value=2.2e+02 Score=25.36 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=54.0
Q ss_pred cEEEEEecCChh-HHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~e-a~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
++|++|.-.+-. +.-++.++.+++.+ .++.+.++......+ .+...++|+|++---
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~~~~~~~~-----------------~~~~~~~Dliist~~----- 57 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKVEQCKIAEV-----------------PSLLDDADLIVSTTK----- 57 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEecHHHh-----------------hcccCCCcEEEEcCC-----
Confidence 478899888864 44556788888864 577555432111111 112346898887432
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHH
Q 002791 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQV 808 (881)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~edl~~~L~~I 808 (881)
.-...+.|++=|+. ||++.+.+++.+.|..+
T Consensus 58 ----~~~~~~~p~i~v~~----~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 58 ----VPEDYGIPVINGLP----FLTGIGEDKVYEEILEA 88 (89)
T ss_pred ----cCCCCCCCEEEEee----ccccCChHHHHHHHHHh
Confidence 11123678888775 88988888888777654
No 258
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=34.33 E-value=1.2e+02 Score=34.42 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=47.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCC-eEEEEccc-hhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEK-MNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~G-veV~vE~~-~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT 767 (881)
++++||.-..-... ...++.+.|.+ .+ +.+++.++ ..+.+. ... +.+ ..++|+||.||| |+
T Consensus 35 ~~~livtd~~~~~~-~~~~l~~~l~~-~~~~~~~~~~~~t~~~v~---------~~~----~~~~~~~~d~IIaiGG-Gs 98 (350)
T PRK00843 35 GRALIVTGPTTKKI-AGDRVEENLED-AGDVEVVIVDEATMEEVE---------KVE----EKAKDVNAGFLIGVGG-GK 98 (350)
T ss_pred CeEEEEECCcHHHH-HHHHHHHHHHh-cCCeeEEeCCCCCHHHHH---------HHH----HHhhccCCCEEEEeCC-ch
Confidence 68999987764211 24567777765 33 22333221 111111 000 111 235899999999 89
Q ss_pred HHHHHHhcCC-CCCcEEEEeC
Q 002791 768 ILHASNLFRG-AVPPVISFNL 787 (881)
Q Consensus 768 ~L~Aar~~~~-~~~PVLGIN~ 787 (881)
++-+++.++- ..+|++-|.+
T Consensus 99 v~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 99 VIDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred HHHHHHHHHHhcCCCEEEeCC
Confidence 9988887642 5789999886
No 259
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=34.25 E-value=81 Score=33.61 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=43.8
Q ss_pred EEEEEecCChhH-HHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH---
Q 002791 692 TVLVLKKPGPAL-MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV--- 767 (881)
Q Consensus 692 kVlIV~K~~~ea-~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT--- 767 (881)
+|+|+.-++... .+. ++.|++ .|+.+.+-... ... .+++|.||.-||-..
T Consensus 2 ~v~Vl~~~G~n~~~~~----~~al~~-~G~~~~~i~~~--------------------~~~-l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDT----VYALRL-LGVDAEIVWYE--------------------DGS-LPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred eEEEEeCCCcCcHHHH----HHHHHH-CCCeEEEEecC--------------------CCC-CCCCCEEEECCCCccccc
Confidence 788998887532 233 344544 47665432110 011 246899999998421
Q ss_pred -----------HHHHHHhcCCCCCcEEEEeCCC
Q 002791 768 -----------ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 768 -----------~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
++..++.+...+.||+||-.|.
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~ 88 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGF 88 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHH
Confidence 4455666666889999999874
No 260
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=33.96 E-value=54 Score=37.48 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=49.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEE--EEccchhhhhhcCCCCccceeeeccCcccc-CCCcc---EEEEEc
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNI--LVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVD---FVACLG 763 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV--~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~D---lVIvLG 763 (881)
.++++||....-... ...++.+.|.+ .|+++ ++-+... ..|.+..+.... ..+ ..++| +||.||
T Consensus 23 ~~rvlvVtd~~v~~~-~~~~l~~~L~~-~g~~~~~~~~~~~e----~~k~~~~v~~~~----~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 23 ADKYLLVTDSNVEDL-YGHRLLEYLRE-AGAPVELLSVPSGE----EHKTLSTLSDLV----ERALALGATRRSVIVALG 92 (355)
T ss_pred CCeEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEeCCCC----CCCCHHHHHHHH----HHHHHcCCCCCcEEEEEC
Confidence 478999987653222 56778888876 46543 3211110 001100000000 011 22455 999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEeCC
Q 002791 764 GDGVILHASNLFR---GAVPPVISFNLG 788 (881)
Q Consensus 764 GDGT~L~Aar~~~---~~~~PVLGIN~G 788 (881)
| |+++-++..++ ...+|++-|.+.
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 93 G-GVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecCc
Confidence 8 89988887754 257999999883
No 261
>PLN02327 CTP synthase
Probab=33.71 E-value=90 Score=38.10 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=27.0
Q ss_pred CCCccEEEEEcCc------hHHHHHHHhcCCCCCcEEEEeCC
Q 002791 753 HERVDFVACLGGD------GVILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 753 ~~~~DlVIvLGGD------GT~L~Aar~~~~~~~PVLGIN~G 788 (881)
..++|.||+-||= |-+ .+++.....++|+|||-+|
T Consensus 360 L~~~DGIvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 360 LKGADGILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLG 400 (557)
T ss_pred hccCCEEEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHH
Confidence 4578999988883 553 4666666689999999987
No 262
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=33.67 E-value=93 Score=34.43 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=35.4
Q ss_pred CCCccEEEEEcCchH-------HHHHHHhcCCCCCcEEEEeCC-----CcccccCCCc
Q 002791 753 HERVDFVACLGGDGV-------ILHASNLFRGAVPPVISFNLG-----SLGFLTSHPF 798 (881)
Q Consensus 753 ~~~~DlVIvLGGDGT-------~L~Aar~~~~~~~PVLGIN~G-----~LGFLt~~~~ 798 (881)
..++|++|+-||+|. ++..++.+.....+|.+|-.| ..|.|.....
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~ 130 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRA 130 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCee
Confidence 357899999999774 666677776778899999987 6788876543
No 263
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=33.50 E-value=63 Score=41.16 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=42.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEccchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCch
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDG 766 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~-~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~d-l~~~~DlVIvLGGDG 766 (881)
..++++||.-+.-.......++.+.|.. ..++++.+-..+. ..|....+... ... ...++|+||.||| |
T Consensus 479 ~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~----~np~~~~v~~~----~~~~~~~~~D~IIaiGG-G 549 (862)
T PRK13805 479 GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVE----PDPTLSTVRKG----AELMRSFKPDTIIALGG-G 549 (862)
T ss_pred CCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-c
Confidence 3579999986543333356778888872 2467665432221 11111101000 000 1347899999998 7
Q ss_pred HHHHHHHhc
Q 002791 767 VILHASNLF 775 (881)
Q Consensus 767 T~L~Aar~~ 775 (881)
+++-+++.+
T Consensus 550 SviD~AK~i 558 (862)
T PRK13805 550 SPMDAAKIM 558 (862)
T ss_pred hHHHHHHHH
Confidence 777777664
No 264
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=33.30 E-value=64 Score=38.29 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCCccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002791 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 753 ~~~~DlVIvLGGDGT-----~L~Aar~~~~~~~PVLGIN~G 788 (881)
...+|-|++=||=|. .+.|++......+|.|||-+|
T Consensus 361 l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLG 401 (585)
T KOG2387|consen 361 LKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLG 401 (585)
T ss_pred hccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehh
Confidence 356899999999775 678888888899999999998
No 265
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=33.00 E-value=55 Score=33.77 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch-------------------
Q 002791 706 EAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG------------------- 766 (881)
Q Consensus 706 ~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDG------------------- 766 (881)
....++++|.. .|..+++-+..... .+.......+|.||.-||-+
T Consensus 20 ~~~~~~~~l~~-~G~~~~iv~~~~~~---------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T cd01745 20 LNQYYVDAVRK-AGGLPVLLPPVDDE---------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDP 83 (189)
T ss_pred HHHHHHHHHHH-CCCEEEEeCCCCCh---------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCCh
Confidence 34678888876 57665543322100 00111224688999999842
Q ss_pred ----HHHHHHHhcCCCCCcEEEEeCCC
Q 002791 767 ----VILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 767 ----T~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
.....++.+...++||+||-.|.
T Consensus 84 ~r~~~~~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 84 ERDAFELALLRAALERGKPILGICRGM 110 (189)
T ss_pred hHHHHHHHHHHHHHHCCCCEEEEcchH
Confidence 22444555555689999999883
No 266
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=32.96 E-value=83 Score=36.24 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=45.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
-++|+++--. ....++++|.+ .|+.+.+-+... +.+++ ..++|.||.-||-|..
T Consensus 167 ~~~V~viD~G------~k~ni~~~L~~-~G~~v~vvp~~~------------------~~~~i~~~~~DGIiLsgGPgdp 221 (354)
T PRK12838 167 GKHVALIDFG------YKKSILRSLSK-RGCKVTVLPYDT------------------SLEEIKNLNPDGIVLSNGPGDP 221 (354)
T ss_pred CCEEEEECCC------HHHHHHHHHHH-CCCeEEEEECCC------------------CHHHHhhcCCCEEEEcCCCCCh
Confidence 3577776542 23567888876 588776643211 01111 1368999999998853
Q ss_pred ------HHHHHhcCCCCCcEEEEeCCC
Q 002791 769 ------LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 ------L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+..++.+... +|||||-+|+
T Consensus 222 ~~~~~~~~~i~~~~~~-~PvlGIClG~ 247 (354)
T PRK12838 222 KELQPYLPEIKKLISS-YPILGICLGH 247 (354)
T ss_pred HHhHHHHHHHHHHhcC-CCEEEECHHH
Confidence 4444444444 9999999983
No 267
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=32.77 E-value=47 Score=37.19 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=69.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeehhhhHHHhhhcCCccccccccccccccccc
Q 002791 94 VEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVA 173 (881)
Q Consensus 94 ~~~~~~~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~g~~~v~s~~~~~~~~f~~~ 173 (881)
.|-+|++|....+-.. +..||-- .||.|+| -|.+-.++++|+. =-...+|+.|..
T Consensus 148 ~del~~Lv~~va~~~~--a~~L~~s----------------Lgl~~k~---~d~V~~LI~~g~~---ieAv~fi~~f~L- 202 (290)
T PF07899_consen 148 EDELLKLVVSVARRKQ--APELCRS----------------LGLSDKM---PDIVEKLIKKGKQ---IEAVRFIYAFGL- 202 (290)
T ss_pred HHHHHHHHHHhcchHh--hHHHHHH----------------cCchhhh---HHHHHHHHHCCCc---cchHHHHHHHcC-
Confidence 4668888887776555 5566632 3677776 4567788999998 455667788864
Q ss_pred ccccccccCCCcccchhhhhhhhhHHHHHHHhccCCCCcchhhHHHHHHHHHhh
Q 002791 174 DISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNV 227 (881)
Q Consensus 174 ~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~l~v~rkLqr~~~~ 227 (881)
.|++||.||.+.-+++..........+==++ ..+.-..-++|.+++.+
T Consensus 203 -----~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~v 250 (290)
T PF07899_consen 203 -----VDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSV 250 (290)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHH
Confidence 6899999999999999777766555443222 23334445566666665
No 268
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=31.61 E-value=79 Score=34.44 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=24.0
Q ss_pred CCccEEEEEcCchHH----------------------HHHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVI----------------------LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~----------------------L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+.+|-+|..||...+ +...+.+...++|||||-.|.
T Consensus 60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 457888888873221 334444445689999999873
No 269
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=31.40 E-value=46 Score=38.34 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=45.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH-
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI- 768 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~- 768 (881)
.+|+|+----+ ..++++|.+ .|+.+.+-+... +.+++ ...+|.||.-||-|..
T Consensus 174 ~~i~viD~G~k------~ni~~~L~~-~G~~v~vvp~~~------------------~~~~i~~~~pDGIiLSgGPgdp~ 228 (358)
T TIGR01368 174 KRVVVIDFGVK------QNILRRLVK-RGCEVTVVPYDT------------------DAEEIKKYNPDGIFLSNGPGDPA 228 (358)
T ss_pred cEEEEEeCCcH------HHHHHHHHH-CCCEEEEEcCCC------------------CHHHHHhhCCCEEEECCCCCCHH
Confidence 37777754222 348888877 588876643211 01121 1246899999996553
Q ss_pred -----HHHHHhcCCCCCcEEEEeCCC
Q 002791 769 -----LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 -----L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+..++.+.. .+|||||-+|+
T Consensus 229 ~~~~~i~~i~~~~~-~~PILGIClG~ 253 (358)
T TIGR01368 229 AVEPAIETIRKLLE-KIPIFGICLGH 253 (358)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECHHH
Confidence 445555555 89999999984
No 270
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=31.33 E-value=48 Score=33.37 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCccEEEEEcCchHHHH-----HHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVILH-----ASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~-----Aar~~~~~~~PVLGIN~G~ 789 (881)
.++|.||.-||.+.... ..+.+....+|||||-+|+
T Consensus 40 ~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 40 KNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred cCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 56899999999775422 2344445689999999983
No 271
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.12 E-value=3.8e+02 Score=29.00 Aligned_cols=78 Identities=8% Similarity=0.079 Sum_probs=46.8
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002791 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (881)
Q Consensus 280 L~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGK 358 (881)
++..++.|+...+++-....-.+.+.......+...|+..+.++=. .....++++..++..+.+..+-|+-+||+--.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT-VGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4466778998888874432111111112223445678988887765 45667888888887765443457666665444
No 272
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=30.46 E-value=85 Score=32.43 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=44.2
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH---
Q 002791 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (881)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~--- 768 (881)
|+||-+.+. .+..|.++|.+ .|+++.+-+... .+.+++ ..++|.||.-||=|+.
T Consensus 2 il~idn~Ds----ft~nl~~~l~~-~g~~v~v~~~~~-----------------~~~~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 2 ILLIDNYDS----FTWNLYQYFCE-LGADVLVKRNDA-----------------LTLADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEEECCCc----cHHHHHHHHHH-CCCcEEEEeCCC-----------------CCHHHHHhcCCCEEEEcCCCCChHHC
Confidence 677777664 23457777776 577766533210 001111 1257889999997654
Q ss_pred ---HHHHHhcCCCCCcEEEEeCCC
Q 002791 769 ---LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 ---L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+...+.+ ...+|||||-+|+
T Consensus 60 ~~~~~~~~~~-~~~~PiLGIClG~ 82 (187)
T PRK08007 60 GISLDVIRHY-AGRLPILGVCLGH 82 (187)
T ss_pred CccHHHHHHh-cCCCCEEEECHHH
Confidence 3344443 3589999999984
No 273
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=30.34 E-value=1e+02 Score=35.87 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=46.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGDGT~ 768 (881)
.++|+||=...+ ..|+++|.+ .|++|.+-+.... .+++ ..++|.||.-||-|..
T Consensus 192 ~~~I~viD~g~k------~ni~~~L~~-~G~~v~vvp~~~~------------------~~~i~~~~~dgIilSgGPg~p 246 (382)
T CHL00197 192 QLKIIVIDFGVK------YNILRRLKS-FGCSITVVPATSP------------------YQDILSYQPDGILLSNGPGDP 246 (382)
T ss_pred CCEEEEEECCcH------HHHHHHHHH-CCCeEEEEcCCCC------------------HHHHhccCCCEEEEcCCCCCh
Confidence 358888877432 238888876 5888776443110 1111 1257899998886632
Q ss_pred ------HHHHHhcCCCCCcEEEEeCCC
Q 002791 769 ------LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 769 ------L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+...+.+....+||+||-+|+
T Consensus 247 ~~~~~~i~~i~~~~~~~~PilGIClGh 273 (382)
T CHL00197 247 SAIHYGIKTVKKLLKYNIPIFGICMGH 273 (382)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEcHHH
Confidence 123333333579999999984
No 274
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=29.96 E-value=1.1e+02 Score=38.65 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=24.8
Q ss_pred CCccEEEEEcCchHH-----HHHHHhcC----CCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVI-----LHASNLFR----GAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~-----L~Aar~~~----~~~~PVLGIN~G~ 789 (881)
..+|.||+-||-|.- ...+..+. ...+|||||-+|+
T Consensus 52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~ 96 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGF 96 (742)
T ss_pred cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhh
Confidence 357999999999974 22222222 2369999999985
No 275
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.50 E-value=3.7e+02 Score=30.70 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=53.3
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEe
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLH 353 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~--~PVLVH 353 (881)
..+-+++.+++|.++.+++-....-.+.+.....+.+...|...+.+.=. .....++++.+.+..+....+ -|+-||
T Consensus 116 ~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 116 SEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 35668888899999999996543111111112334556678888777544 556788888888887754433 678888
Q ss_pred CccCC
Q 002791 354 SKEGV 358 (881)
Q Consensus 354 CtAGK 358 (881)
|+...
T Consensus 195 ~Hnnl 199 (333)
T TIGR03217 195 AHHNL 199 (333)
T ss_pred eCCCC
Confidence 77655
No 276
>PRK07567 glutamine amidotransferase; Provisional
Probab=29.45 E-value=38 Score=36.56 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=24.8
Q ss_pred CCccEEEEEcCchHH------------------HHHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVI------------------LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~------------------L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+.+|.+|+.||-+.. ..+.+.+...++|||||-.|+
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 457999999996432 122333335789999999974
No 277
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.39 E-value=3.6e+02 Score=29.61 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=49.8
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEeCcc
Q 002791 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLHSKE 356 (881)
Q Consensus 279 DL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~--~PVLVHCtA 356 (881)
-++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++.+++..+....+ -|+-+||+-
T Consensus 114 ~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 114 LIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS-FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 35667778999999885543111111112223445678888888755 456788888888887754433 688787765
Q ss_pred CC
Q 002791 357 GV 358 (881)
Q Consensus 357 GK 358 (881)
-.
T Consensus 193 ~~ 194 (266)
T cd07944 193 NL 194 (266)
T ss_pred Cc
Confidence 44
No 278
>PRK11249 katE hydroperoxidase II; Provisional
Probab=29.12 E-value=1.9e+02 Score=36.76 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=55.4
Q ss_pred ccccCCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEc
Q 002791 685 MWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLG 763 (881)
Q Consensus 685 ~W~~~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLG 763 (881)
.|.-.-++|+|+.-.+-+..+ +..+.+.|.+ .|+.|.+-......+....+. .+.. .....+. ...+|.|++.|
T Consensus 592 ~~~~~gRKIaILVaDG~d~~e-v~~~~daL~~-AGa~V~VVSp~~G~V~~s~G~-~I~a--D~t~~~~~Sv~FDAVvVPG 666 (752)
T PRK11249 592 DGDIKGRKVAILLNDGVDAAD-LLAILKALKA-KGVHAKLLYPRMGEVTADDGT-VLPI--AATFAGAPSLTFDAVIVPG 666 (752)
T ss_pred CCCccccEEEEEecCCCCHHH-HHHHHHHHHH-CCCEEEEEECCCCeEECCCCC-EEec--ceeeccCCccCCCEEEECC
Confidence 455567899999987754333 3456777766 577666532211111111111 0100 0111222 22589999999
Q ss_pred Cc---------hHHHHHHHhcCCCCCcEEEEeCC
Q 002791 764 GD---------GVILHASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 764 GD---------GT~L~Aar~~~~~~~PVLGIN~G 788 (881)
|. +-++.-++.+....+||.+|..|
T Consensus 667 G~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG 700 (752)
T PRK11249 667 GKANIADLADNGDARYYLLEAYKHLKPIALAGDA 700 (752)
T ss_pred CchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 94 34555566666688899998875
No 279
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=28.76 E-value=81 Score=32.00 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=26.7
Q ss_pred CCCccEEEEEcCchHH-----------HHHHHhcCCCCCcEEEEeCCC
Q 002791 753 HERVDFVACLGGDGVI-----------LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 753 ~~~~DlVIvLGGDGT~-----------L~Aar~~~~~~~PVLGIN~G~ 789 (881)
...+|.||.-||-++. +...+.+...+.|++||-.|.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 3568999999997654 233344445689999999985
No 280
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.23 E-value=1.7e+02 Score=30.84 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=22.3
Q ss_pred CCccEEEEEcCch--HH---HH------HHHh-cCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDG--VI---LH------ASNL-FRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDG--T~---L~------Aar~-~~~~~~PVLGIN~G~ 789 (881)
+++|.||.-||-- |. |. +... ......||+||-.|.
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~ 87 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGM 87 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHH
Confidence 5689999988621 22 11 1122 223689999999873
No 281
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=28.20 E-value=1.2e+02 Score=26.05 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=19.2
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs 375 (881)
..+.+|+++|..|. |+-.++..++. +|..
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~~~~l~~-~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKAAWLLRE-LGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHHHHHHHH-cCCC
Confidence 45679999998777 77555544443 4543
No 282
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=28.18 E-value=2.6e+02 Score=30.32 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=41.9
Q ss_pred CccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC----------------CCcccccCC---CcccHHHHHHHH
Q 002791 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------------GSLGFLTSH---PFEDYRQDLRQV 808 (881)
Q Consensus 748 ~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~----------------G~LGFLt~~---~~edl~~~L~~I 808 (881)
+..++...+|++|+-+|=.|++.|+. .++|++.++. +..|++.+. +++++.++|+++
T Consensus 243 ~~~~~l~~ad~~v~~~g~~~l~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 NMAAAYAAADLVISRAGASTVAELAA----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred CHHHHHHhCCEEEECCChhHHHHHHH----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 34455577999999988446667754 5789998754 235777653 377888888888
Q ss_pred HcC
Q 002791 809 IYG 811 (881)
Q Consensus 809 l~G 811 (881)
+..
T Consensus 319 l~~ 321 (348)
T TIGR01133 319 LLD 321 (348)
T ss_pred HcC
Confidence 754
No 283
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=28.09 E-value=1.3e+02 Score=30.43 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=52.2
Q ss_pred EEEEEecCC-h-hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 692 TVLVLKKPG-P-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 692 kVlIV~K~~-~-ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
+|+++.... . -.......+.+++.+ .|+++.+...-.+. .. ..... ..-...++|.+|+.+.+.+.+
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~~l~~~~~~~~~-~~--~~~~~-------~~~~~~~~d~ii~~~~~~~~~ 69 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AGYQVLLANSQNDA-EK--QLSAL-------ENLIARGVDGIIIAPSDLTAP 69 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCCCH-HH--HHHHH-------HHHHHcCCCEEEEecCCCcch
Confidence 356666443 2 244556677777766 68887654331110 00 00000 011234789999999998877
Q ss_pred HHHHhcCCCCCcEEEEeCCC
Q 002791 770 HASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~G~ 789 (881)
..+..+....+|++.++...
T Consensus 70 ~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 70 TIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred hHHHHhhhcCCCEEEeccCC
Confidence 66777777899999998764
No 284
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.85 E-value=1.3e+02 Score=28.91 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=51.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE-ccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002791 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (881)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~v-E~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L 769 (881)
|+|+||.-..++ ......+.++|.+ .|.+|+. .+.. +.+ .+. ..| .+..+..+.+|++++.-.-.++.
T Consensus 1 ksiAVvGaS~~~-~~~g~~v~~~l~~-~G~~v~~Vnp~~-~~i---~G~---~~y--~sl~e~p~~iDlavv~~~~~~~~ 69 (116)
T PF13380_consen 1 KSIAVVGASDNP-GKFGYRVLRNLKA-AGYEVYPVNPKG-GEI---LGI---KCY--PSLAEIPEPIDLAVVCVPPDKVP 69 (116)
T ss_dssp -EEEEET--SST-TSHHHHHHHHHHH-TT-EEEEESTTC-SEE---TTE---E-B--SSGGGCSST-SEEEE-S-HHHHH
T ss_pred CEEEEEcccCCC-CChHHHHHHHHHh-CCCEEEEECCCc-eEE---CcE---Eee--ccccCCCCCCCEEEEEcCHHHHH
Confidence 578888865532 1235667778776 6888774 3332 222 121 122 23344467899999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCC
Q 002791 770 HASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~G 788 (881)
...+.+...++.-+=|..|
T Consensus 70 ~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 70 EIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHcCCCEEEEEcc
Confidence 9999888778888888888
No 285
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=27.75 E-value=2e+02 Score=29.12 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=56.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhh--hhhcCCCCccceeeeccCcccc-CCCccEEEEEcCc-
Q 002791 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD- 765 (881)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~--~l~~~p~~~~v~~f~~~~~~dl-~~~~DlVIvLGGD- 765 (881)
.++|+|+...+-+..+... -.+.|.+ .|..+.+...... ......+...... .....+. ..+.|.+++-||+
T Consensus 2 ~~~i~i~~~~g~e~~E~~~-p~~~l~~-ag~~v~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~ydal~ipGG~~ 77 (188)
T COG0693 2 MKKIAILLADGFEDLELIV-PYDVLRR-AGFEVDVASPEGKGKSVTSKRGGLVVAD--DKAFDDADAADYDALVIPGGDH 77 (188)
T ss_pred CceeEEEecCcceehhHhH-HHHHHHH-CCCeEEEEecCCCcceeecccCcceEec--ccccccCCHhHCCEEEECCCcc
Confidence 5688888888865555543 2334444 3554443222211 1100111000000 0011122 3579999999994
Q ss_pred --------hHHHHHHHhcCCCCCcEEEEeCCCccccc
Q 002791 766 --------GVILHASNLFRGAVPPVISFNLGSLGFLT 794 (881)
Q Consensus 766 --------GT~L~Aar~~~~~~~PVLGIN~G~LGFLt 794 (881)
-.+++.++.|...+.||.+|-.|..-++.
T Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ 114 (188)
T COG0693 78 GPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAA 114 (188)
T ss_pred chhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhc
Confidence 46888888888889999999887644433
No 286
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=27.27 E-value=1.4e+02 Score=32.15 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=28.8
Q ss_pred CccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC
Q 002791 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (881)
Q Consensus 748 ~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~ 787 (881)
+..++...+|+||+-||-+|+..++. .++|++-|-.
T Consensus 243 ~~~~~m~~ad~vIs~~G~~t~~Ea~~----~g~P~l~ip~ 278 (318)
T PF13528_consen 243 DFAELMAAADLVISKGGYTTISEALA----LGKPALVIPR 278 (318)
T ss_pred HHHHHHHhCCEEEECCCHHHHHHHHH----cCCCEEEEeC
Confidence 34455577999999999999999975 4789988764
No 287
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=27.20 E-value=2.8e+02 Score=31.15 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=41.9
Q ss_pred CccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCC-----------C--cccccC---CCcccHHHHHHHHHcC
Q 002791 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-----------S--LGFLTS---HPFEDYRQDLRQVIYG 811 (881)
Q Consensus 748 ~~~dl~~~~DlVIvLGGDGT~L~Aar~~~~~~~PVLGIN~G-----------~--LGFLt~---~~~edl~~~L~~Il~G 811 (881)
+..++...+|++|+=||=||+..++. .++|++.+-.+ . .|.... ++.+++.++|++++..
T Consensus 297 p~~~ll~~~d~~I~hgG~~t~~eal~----~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 297 PHDWLLPRCAAVVHHGGAGTTAAALR----AGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred CHHHHhhhhheeeecCCchhHHHHHH----cCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 34455677999999999999999875 48899988442 1 232222 3556777778777764
No 288
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=26.20 E-value=2.6e+02 Score=34.59 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=51.5
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecC---------CCCCCCHHHHHHHHHHHhcC
Q 002791 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVE---------VRTAPTMEQVEKFASLVSNS 345 (881)
Q Consensus 275 pT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~---------d~~~ps~E~v~af~~il~d~ 345 (881)
++.+++..+.+.+=-.|||.|+.+ .|. .-...|.. ++|+. ....|+.+++++.+.-+--.
T Consensus 11 Is~~eL~~~l~~~~vvIIDvR~~~----eY~-----~GHIPGAv--~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 11 IEPNDLLERLDAPELILVDLTSSA----RYE-----AGHIRGAR--FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ecHHHHHHHhcCCCEEEEECCChH----HHH-----hCCCCCcE--EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 567777777655334699999753 121 11233433 33332 12235567777776655335
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002791 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLaaLlr~l~Gv 374 (881)
.+.+|++.|..|..+++-++.++ .++|.
T Consensus 80 ~d~~VVvYd~~g~~~A~R~~w~L-~~~G~ 107 (610)
T PRK09629 80 PDAVYVVYDDEGGGWAGRFIWLL-DVIGH 107 (610)
T ss_pred CCCEEEEECCCCCchHHHHHHHH-HHcCC
Confidence 67899999999876766444444 44674
No 289
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=25.99 E-value=4.2e+02 Score=26.68 Aligned_cols=44 Identities=7% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCcEEEEEecCCh--hHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcC
Q 002791 689 TPRTVLVLKKPGP--ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI 735 (881)
Q Consensus 689 ~pkkVlIV~K~~~--ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~ 735 (881)
++++|+|..+..+ ++.+.++++.+.|. |++++..+.+++.|...
T Consensus 3 ~~~~v~lsv~d~dK~~l~~~a~~l~~ll~---Gf~l~AT~gTa~~L~~~ 48 (142)
T PRK05234 3 ARKRIALIAHDHKKDDLVAWVKAHKDLLE---QHELYATGTTGGLIQEA 48 (142)
T ss_pred cCcEEEEEEeccchHHHHHHHHHHHHHhc---CCEEEEeChHHHHHHhc
Confidence 5678888887664 46777777777762 78888888888877643
No 290
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=25.44 E-value=2.2e+02 Score=27.94 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=27.2
Q ss_pred CccEEEEEcCch--------HHHHHHHhcCCCCCcEEEEeCCCc
Q 002791 755 RVDFVACLGGDG--------VILHASNLFRGAVPPVISFNLGSL 790 (881)
Q Consensus 755 ~~DlVIvLGGDG--------T~L~Aar~~~~~~~PVLGIN~G~L 790 (881)
+.|.+|+.||.+ .++..++.+.....||.+|-.|..
T Consensus 62 ~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~ 105 (165)
T cd03134 62 DYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPW 105 (165)
T ss_pred HCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHH
Confidence 579999999954 345556666668999999998743
No 291
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=25.40 E-value=1.3e+02 Score=34.80 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=51.0
Q ss_pred CCcEEEEEecCCh-hH-HHHHHHHHHHHhcCCC--eEEEEccchhhhhhcCCCCc---cceeeeccCccccCCCccEEEE
Q 002791 689 TPRTVLVLKKPGP-AL-MEEAKEVASFLYHQEK--MNILVEPDVHDIFARIPGFG---FVQTFYLQDTSDLHERVDFVAC 761 (881)
Q Consensus 689 ~pkkVlIV~K~~~-ea-~e~a~eL~~~L~~~~G--veV~vE~~~~~~l~~~p~~~---~v~~f~~~~~~dl~~~~DlVIv 761 (881)
..++++||....- +. ......+.+.|.+ .| +++++..-+ ..+....-+ .+...+..-.+.-.++.|+||.
T Consensus 29 ~~~r~lvVtD~~v~~~~~~~~~~l~~~L~~-~g~~~~v~~~~~~--~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIa 105 (369)
T cd08198 29 ARPKVLVVIDSGVAQANPQLASDIQAYAAA-HADALRLVAPPHI--VPGGEACKNDPDLVEALHAAINRHGIDRHSYVIA 105 (369)
T ss_pred CCCeEEEEECcchHHhhhhHHHHHHHHHHh-cCCceeeeeeeEe--cCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 3578999988764 32 3456778888865 46 332211100 000000000 0000000000111234569999
Q ss_pred EcCchHHHHHHHhcC---CCCCcEEEEeCC
Q 002791 762 LGGDGVILHASNLFR---GAVPPVISFNLG 788 (881)
Q Consensus 762 LGGDGT~L~Aar~~~---~~~~PVLGIN~G 788 (881)
||| |+++-++..++ ..++|++-|.+=
T Consensus 106 lGG-G~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 106 IGG-GAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred ECC-hHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 999 89988887664 458999998863
No 292
>PRK09065 glutamine amidotransferase; Provisional
Probab=24.36 E-value=55 Score=35.14 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=25.8
Q ss_pred CCccEEEEEcCchHH----------HHHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDGVI----------LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~----------L~Aar~~~~~~~PVLGIN~G~ 789 (881)
.++|.||+.||=.+. +...+.+...++|||||-+|+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 457999999997652 333444445689999999974
No 293
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.23 E-value=5e+02 Score=29.66 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=52.2
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 002791 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (881)
Q Consensus 276 T~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~--~~PVLVH 353 (881)
..+-+++.+++|.++.+++-....-.+.+.....+.+...|...+.+.=. .....++++.+++..+.... +-|+-+|
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS-AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34557788889999999986543111111112233456678888776544 45678888888888775443 5677777
Q ss_pred CccCC
Q 002791 354 SKEGV 358 (881)
Q Consensus 354 CtAGK 358 (881)
|+--.
T Consensus 196 ~Hnnl 200 (337)
T PRK08195 196 GHNNL 200 (337)
T ss_pred eCCCc
Confidence 66544
No 294
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=24.09 E-value=6.5e+02 Score=31.28 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhccCCCC---CCCCCCCCcCCCCceeEE-ecCCccccccCCCcccEEEcC-CC-----CHhhHHHHHHcC
Q 002791 218 WRKLQRLKNVCYDSGFP---RGDDYPIHTLFANWSPVY-LSNSKDDIASKDSEVTFCRGG-QV-----TEEGLKWLMEKG 287 (881)
Q Consensus 218 ~rkLqr~~~~~~d~g~p---r~~gyp~~~~i~Nw~~V~-ls~~~~~~~~~~~e~~LyRSg-qp-----T~eDL~~LkelG 287 (881)
|.+|.+++...-+.-+- |..+.+..+.++.-- |. +-. ...+.-..++|-. .+ ....++..++.|
T Consensus 63 werl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~v-v~~~v~-----~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G 136 (596)
T PRK14042 63 WSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDV-VRAFVK-----LAVNNGVDVFRVFDALNDARNLKVAIDAIKSHK 136 (596)
T ss_pred HHHHHHHHHhCCCCceEEEeccccccccccCChHH-HHHHHH-----HHHHcCCCEEEEcccCcchHHHHHHHHHHHHcC
Confidence 77888888765554432 444444222222100 00 000 0012234667766 22 234577788888
Q ss_pred CcEEEE--cCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002791 288 YKTIVD--IRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (881)
Q Consensus 288 IKTIID--LRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGK 358 (881)
..+... +.....-...+-....+.+...|+..+.|.=. ....++.++.+.+..+.+..+-||-+||+.-.
T Consensus 137 ~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDt-aG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~ 208 (596)
T PRK14042 137 KHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDM-AGLLTPTVTVELYAGLKQATGLPVHLHSHSTS 208 (596)
T ss_pred CEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCc-ccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCC
Confidence 877766 44332111111112233456689988777644 34567888888777776555578777665444
No 295
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=23.89 E-value=18 Score=33.19 Aligned_cols=18 Identities=50% Similarity=1.053 Sum_probs=13.1
Q ss_pred CCCCCCcc----------CCCCCchHHH
Q 002791 77 DPSQLPWI----------GPVPGDIAEV 94 (881)
Q Consensus 77 ~~~~~~~~----------~~~~~~~~~~ 94 (881)
.+.||||| |-.||||.++
T Consensus 36 ~~~qLPkI~~~DPva~~lgak~GdvVkI 63 (80)
T COG2012 36 EPEQLPKIKASDPVAKALGAKPGDVVKI 63 (80)
T ss_pred CHHHCCcccccChhHHHccCCCCcEEEE
Confidence 35688886 7789997653
No 296
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.55 E-value=6e+02 Score=29.36 Aligned_cols=79 Identities=6% Similarity=0.057 Sum_probs=50.7
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002791 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (881)
Q Consensus 279 DL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGK 358 (881)
-++..++.|++..++.-.....++.+.......+...|+..+.++=. ....+++++.+++..+.+..+-|+-+||+--.
T Consensus 121 ~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 199 (378)
T PRK11858 121 AVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVHCHNDF 199 (378)
T ss_pred HHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 35567778999888763322111222222233456689999888855 45678888888887775444678888887655
No 297
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=23.11 E-value=7.3e+02 Score=26.66 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=63.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEE----EcCch-
Q 002791 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVAC----LGGDG- 766 (881)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIv----LGGDG- 766 (881)
+|+||-.- ......|..+|.+ .|+.|....+..+.+... . .. +|+||. =++||
T Consensus 2 ~ILiveDd----~~i~~~l~~~L~~-~g~~v~~~~~~~~a~~~~---------------~-~~-~dlviLD~~lP~~dG~ 59 (229)
T COG0745 2 RILLVEDD----PELAELLKEYLEE-EGYEVDVAADGEEALEAA---------------R-EQ-PDLVLLDLMLPDLDGL 59 (229)
T ss_pred eEEEEcCC----HHHHHHHHHHHHH-CCCEEEEECCHHHHHHHH---------------h-cC-CCEEEEECCCCCCCHH
Confidence 45665433 2345567778876 699888766543322110 0 12 566654 37899
Q ss_pred HHHHHHHhcCCCCCcEEEEeC-------------CCcccccC-CCcccHHHHHHHHHcCC
Q 002791 767 VILHASNLFRGAVPPVISFNL-------------GSLGFLTS-HPFEDYRQDLRQVIYGN 812 (881)
Q Consensus 767 T~L~Aar~~~~~~~PVLGIN~-------------G~LGFLt~-~~~edl~~~L~~Il~G~ 812 (881)
++++-.|......+||+-+.. |-=-|++- |++.++...+..++...
T Consensus 60 ~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 60 ELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred HHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 788888844667889986654 55556664 88889988899888765
No 298
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=23.04 E-value=1.7e+02 Score=30.42 Aligned_cols=88 Identities=11% Similarity=-0.031 Sum_probs=48.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~ 768 (881)
...+|++|.-....-.+......+.+.+ .|+++..-..... .. .....+....+|.|++-|||=..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~-lG~~~~~~~~~~~-----~~--------~~~~~~~l~~ad~I~~~GG~~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFER-LGVEVVHLLLIDT-----AN--------DPDVVARLLEADGIFVGGGNQLR 93 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHH-cCCceEEEeccCC-----CC--------CHHHHHHHhhCCEEEEcCCcHHH
Confidence 3568888876554333445566666655 4665432111100 00 00112334679999999999554
Q ss_pred HHH----------HHhcCCCCCcEEEEeCCCc
Q 002791 769 LHA----------SNLFRGAVPPVISFNLGSL 790 (881)
Q Consensus 769 L~A----------ar~~~~~~~PVLGIN~G~L 790 (881)
|.. .+.....++|++|+..|..
T Consensus 94 ~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 94 LLSVLRETPLLDAILKRVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHHHHhCChHHHHHHHHHcCCeEEEcCHHHH
Confidence 432 2222225899999998754
No 299
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=23.04 E-value=2.9e+02 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=38.6
Q ss_pred CCccEEEEEcCc----hHHHHHHHhcCCCCCcEEEEeCC-----CcccccCCCcccHHHHHHHHHc
Q 002791 754 ERVDFVACLGGD----GVILHASNLFRGAVPPVISFNLG-----SLGFLTSHPFEDYRQDLRQVIY 810 (881)
Q Consensus 754 ~~~DlVIvLGGD----GT~L~Aar~~~~~~~PVLGIN~G-----~LGFLt~~~~edl~~~L~~Il~ 810 (881)
.++|+||.+|=+ -.+|++.++|. .+-.+.+.-. ..-| .+++.+++.+.|++++.
T Consensus 99 g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~~y~pnA~~Sf-~n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 99 GNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDKYYQPNADYSF-PNLSKDEYLDYLRKLLA 161 (162)
T ss_pred CCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecCCCCCCCceec-cccCHHHHHHHHHHHhc
Confidence 679999999998 56788888887 5667777621 2222 23456778888888765
No 300
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=22.74 E-value=83 Score=25.38 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCCccEEEEEcCchHHHH---------HHHhcCCCCCcEEEEeCCCc
Q 002791 753 HERVDFVACLGGDGVILH---------ASNLFRGAVPPVISFNLGSL 790 (881)
Q Consensus 753 ~~~~DlVIvLGGDGT~L~---------Aar~~~~~~~PVLGIN~G~L 790 (881)
..+.|.+|..||.++... ....+.....|++|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 457899999999887733 33334445789999988853
No 301
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=22.64 E-value=2.7e+02 Score=29.32 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=47.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCC-CeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002791 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (881)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~-GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT 767 (881)
...+|++|.-......+....+.+.+.+ . |+++..-.... ..+..+...++|+|++=|| .
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~-l~G~~~~~~~~~~----------------~~~~~~~l~~ad~I~l~GG--~ 90 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFES-LRGVEVSHLHLFD----------------TEDPLDALLEADVIYVGGG--N 90 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhh-ccCcEEEEEeccC----------------cccHHHHHhcCCEEEECCc--h
Confidence 4568898877665444556667777755 6 77665322110 0011122356898777665 4
Q ss_pred HHHHHHhc------------CCCCCcEEEEeCCCc
Q 002791 768 ILHASNLF------------RGAVPPVISFNLGSL 790 (881)
Q Consensus 768 ~L~Aar~~------------~~~~~PVLGIN~G~L 790 (881)
..+..+.+ ...+.|++|+..|-.
T Consensus 91 ~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~ 125 (212)
T cd03146 91 TFNLLAQWREHGLDAILKAALERGVVYIGWSAGSN 125 (212)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHH
Confidence 44333322 235799999999754
No 302
>PRK00758 GMP synthase subunit A; Validated
Probab=22.37 E-value=1.3e+02 Score=30.66 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=21.1
Q ss_pred cEEEEEcCchHHHH---HHHhcCCCCCcEEEEeCCC
Q 002791 757 DFVACLGGDGVILH---ASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 757 DlVIvLGGDGT~L~---Aar~~~~~~~PVLGIN~G~ 789 (881)
|.+|.-||.. +-. ....+...++|||||-+|+
T Consensus 43 dgivi~Gg~~-~~~~~~~~~~l~~~~~PilGIC~G~ 77 (184)
T PRK00758 43 DGLILSGGPD-IERAGNCPEYLKELDVPILGICLGH 77 (184)
T ss_pred CEEEECCCCC-hhhccccHHHHHhCCCCEEEEeHHH
Confidence 8888888873 211 1222324689999999984
No 303
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=21.91 E-value=1.5e+02 Score=33.87 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.2
Q ss_pred CccEEEEEcCchHHHHHHHhc
Q 002791 755 RVDFVACLGGDGVILHASNLF 775 (881)
Q Consensus 755 ~~DlVIvLGGDGT~L~Aar~~ 775 (881)
++|+||.||| |..+-+++.+
T Consensus 81 ~~D~IIaiGG-GS~iD~AKai 100 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAV 100 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHH
Confidence 7999999999 7777777654
No 304
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.73 E-value=1.5e+02 Score=30.58 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=22.1
Q ss_pred CccEEEEEcCchH-----------HHHHHHhcCCCCCcEEEEeCCC
Q 002791 755 RVDFVACLGGDGV-----------ILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 755 ~~DlVIvLGGDGT-----------~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
++|.||.-||..+ +....+.+...++|||||-.|.
T Consensus 36 ~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~ 81 (198)
T cd01748 36 SADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGM 81 (198)
T ss_pred cCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 5788777554211 2344444445689999998874
No 305
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=21.38 E-value=30 Score=36.25 Aligned_cols=42 Identities=2% Similarity=-0.090 Sum_probs=35.6
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhhhcc
Q 002791 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSN 387 (881)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLaaLlr~l~Gvs~ddIiaDYL~s~ 387 (881)
.++=|.|||..||+.|.+...+....+|....-.+-|+|+..
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~ 61 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGG 61 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCC
Confidence 456699999999999998888887778988888888888765
No 306
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=21.34 E-value=49 Score=33.83 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=24.8
Q ss_pred ccEEEEEcCchHH-----HHHHHhcCCCCCcEEEEeCCC
Q 002791 756 VDFVACLGGDGVI-----LHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 756 ~DlVIvLGGDGT~-----L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+|.||..||.+.. ....+.+...++|||||-+|+
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 4689999987653 344555555789999999873
No 307
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.33 E-value=3.6e+02 Score=29.70 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=48.7
Q ss_pred hhHHHHHHcCCcEEEEcCCC--cccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002791 278 EGLKWLMEKGYKTIVDIRAE--RVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (881)
Q Consensus 278 eDL~~LkelGIKTIIDLRse--e~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCt 355 (881)
+-++..+++|++..+++-.. ..-.+.+.....+.+...|+..+.++=. ....+++++...+..+....+.|+-+||+
T Consensus 122 ~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 200 (275)
T cd07937 122 VAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDM-AGLLTPYAAYELVKALKKEVGLPIHLHTH 200 (275)
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34566778898888766321 1011111112233456678998888744 45667888888888775544467777776
Q ss_pred cCC
Q 002791 356 EGV 358 (881)
Q Consensus 356 AGK 358 (881)
--.
T Consensus 201 nd~ 203 (275)
T cd07937 201 DTS 203 (275)
T ss_pred CCC
Confidence 444
No 308
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=21.28 E-value=1.9e+02 Score=28.76 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHH
Q 002791 333 EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 368 (881)
Q Consensus 333 E~v~af~~il~d~~~~PVLVHCtAGKDRTGaLaaLl 368 (881)
+.+.+.+.-+ ..+.||+++|..|. ++..++..+
T Consensus 37 ~~l~~~l~~l--~~~~~vVv~c~~g~-~a~~aa~~L 69 (145)
T cd01535 37 AQLAQALEKL--PAAERYVLTCGSSL-LARFAAADL 69 (145)
T ss_pred HHHHHHHHhc--CCCCCEEEEeCCCh-HHHHHHHHH
Confidence 3444433333 34679999999975 555444444
No 309
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=21.21 E-value=2.3e+02 Score=33.00 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=33.7
Q ss_pred CCccEEEEEcCchHHHHHHHhcCC-CCCcEEEEeC--CCcccccC
Q 002791 754 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL--GSLGFLTS 795 (881)
Q Consensus 754 ~~~DlVIvLGGDGT~L~Aar~~~~-~~~PVLGIN~--G~LGFLt~ 795 (881)
.++|+||-+|| |+.|-+++.... .+.|++.|-+ -+=|+-++
T Consensus 83 ~~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 83 DGADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPTIASTDAITSP 126 (360)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEecCccccccccCC
Confidence 56899999999 999999998774 6999999876 45566555
No 310
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=20.87 E-value=2.4e+02 Score=30.03 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCccEEEEEcCch--------------HHHHHHHhcCCCCCcEEEEeCCC
Q 002791 754 ERVDFVACLGGDG--------------VILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 754 ~~~DlVIvLGGDG--------------T~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
+++|.+|.-||-+ .++...+.+...+.||+||-.|.
T Consensus 40 ~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~ 89 (219)
T PRK03619 40 DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF 89 (219)
T ss_pred CCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHH
Confidence 4679999989842 22333555556799999998863
No 311
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.54 E-value=7.2e+02 Score=28.53 Aligned_cols=79 Identities=8% Similarity=0.081 Sum_probs=49.1
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002791 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (881)
Q Consensus 279 DL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGK 358 (881)
-++..++.|++..+++-....-++.+.......+...|...+.++=. ....+++++..++..+.+..+-|+=+||+--.
T Consensus 118 ~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 118 LVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35556678998877764332111222212233456689998888766 45667888888887775544567777776544
No 312
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.52 E-value=7.1e+02 Score=27.10 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=46.4
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC---CcEEEeCcc
Q 002791 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK---KPLYLHSKE 356 (881)
Q Consensus 280 L~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~---~PVLVHCtA 356 (881)
++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++..+++.+....+ -|+-+||+-
T Consensus 120 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn 198 (268)
T cd07940 120 VEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDT-VGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198 (268)
T ss_pred HHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC
Confidence 4556678998777764332111111112223445678888877655 455678888888887754433 577777765
Q ss_pred CC
Q 002791 357 GV 358 (881)
Q Consensus 357 GK 358 (881)
-.
T Consensus 199 ~~ 200 (268)
T cd07940 199 DL 200 (268)
T ss_pred Cc
Confidence 54
No 313
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.44 E-value=6.4e+02 Score=30.35 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=50.7
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002791 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (881)
Q Consensus 280 L~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAGK 358 (881)
++.+++.|.+..+++-.....++.+.......+...|...+.+|=. ....++.++..++..+.+..+-|+=+||+--.
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-vG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~ 197 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDT-VGILTPEKTYELFKRLSELVKGPVSIHCHNDF 197 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCcCHHHHHHHHHHHHhhcCCeEEEEecCCc
Confidence 5667778998888874332112222212233456689999999876 45567888887777765545578888887655
No 314
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.43 E-value=2.8e+02 Score=24.56 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=37.4
Q ss_pred CcEEEEEecCC--hhHHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc
Q 002791 690 PRTVLVLKKPG--PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (881)
Q Consensus 690 pkkVlIV~K~~--~ea~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGD 765 (881)
|..|.|+.-.. .+....+.+++..|.. .|+.|.++... +.++. .+ ......++.++|+||.+
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~-~~l~k--------~i----~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRN-ERPGV--------KF----ADADLIGIPYRIVVGKK 64 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCC-CCccc--------ch----hHHHhcCCCEEEEECCc
Confidence 34667775443 2567788899999976 59998876432 11111 00 00113568999999943
No 315
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=20.41 E-value=2.6e+02 Score=28.27 Aligned_cols=84 Identities=12% Similarity=-0.052 Sum_probs=49.7
Q ss_pred EEEEecCC-hh-HHHHHHHHHHHHhcCCCeEEEEccchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002791 693 VLVLKKPG-PA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (881)
Q Consensus 693 VlIV~K~~-~e-a~e~a~eL~~~L~~~~GveV~vE~~~~~~l~~~p~~~~v~~f~~~~~~dl~~~~DlVIvLGGDGT~L~ 770 (881)
|+++.-.. .. .......+.+.+.+ .|+++.+...-.+. .. ... .-..-...++|.+|+.+.|.+-+.
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~-~~-----~~~----~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAARE-AGYSVLLCNSDEDP-EK-----ERE----ALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCCCH-HH-----HHH----HHHHHHHcCcCEEEEecCCcchHH
Confidence 55555443 23 34455677777765 57776654321110 00 000 000112357999999999988877
Q ss_pred HHHhcCCCCCcEEEEeCC
Q 002791 771 ASNLFRGAVPPVISFNLG 788 (881)
Q Consensus 771 Aar~~~~~~~PVLGIN~G 788 (881)
.+.+...++|++.++..
T Consensus 71 -~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 71 -LEELAALGIPVVLVDRP 87 (264)
T ss_pred -HHHHHHcCCCEEEeccc
Confidence 66677789999999875
No 316
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=20.32 E-value=7.9e+02 Score=28.24 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=50.8
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccC
Q 002791 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEG 357 (881)
Q Consensus 278 eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~~PVLVHCtAG 357 (881)
+-++..++.|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++..++..+.+..+-|+-+||+--
T Consensus 116 ~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd 194 (363)
T TIGR02090 116 EAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT-VGVLTPQKMEELIKKLKENVKLPISVHCHND 194 (363)
T ss_pred HHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCccCHHHHHHHHHHHhcccCceEEEEecCC
Confidence 345667778999888874332111112112223456678988888765 4567888898888887654456777777655
Q ss_pred C
Q 002791 358 V 358 (881)
Q Consensus 358 K 358 (881)
.
T Consensus 195 ~ 195 (363)
T TIGR02090 195 F 195 (363)
T ss_pred C
Confidence 4
No 317
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.23 E-value=4.9e+02 Score=27.37 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=45.5
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeCcc
Q 002791 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHSKE 356 (881)
Q Consensus 279 DL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~d~~~-~PVLVHCtA 356 (881)
-+.+.+++|++..+++-....-.+.+.......+...|+..+.++=. ....+++++..++..+.+..+ .|+=+||+-
T Consensus 113 ~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hn 190 (237)
T PF00682_consen 113 AVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADT-VGIMTPEDVAELVRALREALPDIPLGFHAHN 190 (237)
T ss_dssp HHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEET-TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBB
T ss_pred HHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCc-cCCcCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 35667788999999985543111112112233455568888888755 455678888888777754333 676665544
No 318
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=20.10 E-value=4.4e+02 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=24.1
Q ss_pred CccEEEEEcCc----------hHHHHHHHhcCCCCCcEEEEeCCC
Q 002791 755 RVDFVACLGGD----------GVILHASNLFRGAVPPVISFNLGS 789 (881)
Q Consensus 755 ~~DlVIvLGGD----------GT~L~Aar~~~~~~~PVLGIN~G~ 789 (881)
.+|.+|+.||= +........+....+|||||=+|+
T Consensus 45 ~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~ 89 (198)
T COG0518 45 SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGH 89 (198)
T ss_pred CCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhH
Confidence 45999999995 344444444444566799999984
No 319
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=20.06 E-value=2.8e+02 Score=31.56 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=50.5
Q ss_pred EEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHHHhhCCcEEEEeecCCCCCCCHHHHHHHHHHHh----c
Q 002791 269 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS----N 344 (881)
Q Consensus 269 LyRSgqpT~eDL~~LkelGIKTIIDLRsee~Ee~~~~~~e~~~~e~~GI~yIhIPV~d~~~ps~E~v~af~~il~----d 344 (881)
-.+|..++|+++..+....=.-|||-|.+- | + .|-.+. +...|..+.+++|-.++. .
T Consensus 109 ~~vG~yl~p~~wn~~l~D~~~vviDtRN~Y-E---~-----------~iG~F~----gAv~p~~~tFrefP~~v~~~~~~ 169 (308)
T COG1054 109 ENVGTYLSPKDWNELLSDPDVVVIDTRNDY-E---V-----------AIGHFE----GAVEPDIETFREFPAWVEENLDL 169 (308)
T ss_pred ccccCccCHHHHHHHhcCCCeEEEEcCcce-e---E-----------eeeeec----CccCCChhhhhhhHHHHHHHHHh
Confidence 335778899999888766448899999874 1 0 011111 112344455555555443 2
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHH
Q 002791 345 SSKKPLYLHSKEGVWRTYAMVSRWR 369 (881)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGaLaaLlr 369 (881)
..++||.+.||.|. |.--..+.++
T Consensus 170 ~~~KkVvmyCTGGI-RCEKas~~m~ 193 (308)
T COG1054 170 LKDKKVVMYCTGGI-RCEKASAWMK 193 (308)
T ss_pred ccCCcEEEEcCCce-eehhhHHHHH
Confidence 35779999999999 8875555443
Done!