BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002792
(880 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 311/895 (34%), Positives = 487/895 (54%), Gaps = 54/895 (6%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE
Sbjct: 101 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 161 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 220
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM +VV+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 221 SSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 280
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAG--VGDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 281 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGARG 340
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FR
Sbjct: 341 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFR 394
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 395 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 454
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N ++ +LP++NEFIPT+F I
Sbjct: 455 SFEGKTD-RTEEWYGTQYKQEAIPDAVIAKWQN-AALNGKFKLPTKNEFIPTNFEI---- 508
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+AN F Y + + + L++
Sbjct: 509 LPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYL 568
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 569 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEA 628
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIP 688
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 689 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLAAYREV 740
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 741 QLPDRGWFVYQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRT 796
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 797 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 855
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 856 HIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEML 915
Query: 830 QQWSPKCRRLAVRVWG----CNTNIKESEKHSKSAL----------VIKDLTAFK 870
+P+ +++V V N + E + L VI+++TAFK
Sbjct: 916 AVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDINLSQAPALPQPEVIQNMTAFK 970
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/854 (35%), Positives = 474/854 (55%), Gaps = 40/854 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE
Sbjct: 88 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 147
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 148 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 207
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM +VV+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 208 SSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 267
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 268 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 327
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FR
Sbjct: 328 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFR 381
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 382 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 441
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I
Sbjct: 442 SFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI---- 495
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+AN F Y + + + L++
Sbjct: 496 LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYL 555
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 556 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEK 615
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 616 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 675
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 676 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 727
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 728 QLPDRGWFVYQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRT 783
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 784 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 842
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 843 HIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEML 902
Query: 830 QQWSPKCRRLAVRV 843
+P+ +++V V
Sbjct: 903 AVDAPRRHKVSVHV 916
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/854 (35%), Positives = 474/854 (55%), Gaps = 40/854 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE
Sbjct: 101 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 161 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 220
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM +VV+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 221 SSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 280
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 281 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 340
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FR
Sbjct: 341 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFR 394
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 395 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 454
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I
Sbjct: 455 SFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI---- 508
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+AN F Y + + + L++
Sbjct: 509 LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYL 568
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 569 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEK 628
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 688
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 689 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 740
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 741 QLPDRGWFVYQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRT 796
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 797 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 855
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 856 HIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEML 915
Query: 830 QQWSPKCRRLAVRV 843
+P+ +++V V
Sbjct: 916 AVDAPRRHKVSVHV 929
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/854 (35%), Positives = 474/854 (55%), Gaps = 40/854 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE
Sbjct: 101 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 161 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 220
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM +VV+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 221 SSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 280
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 281 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 340
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FR
Sbjct: 341 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFR 394
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 395 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 454
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I
Sbjct: 455 SFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI---- 508
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+AN F Y + + + L++
Sbjct: 509 LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYL 568
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 569 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEK 628
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 688
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 689 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 740
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 741 QLPDRGWFVYQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRT 796
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 797 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 855
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 856 HIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEML 915
Query: 830 QQWSPKCRRLAVRV 843
+P+ +++V V
Sbjct: 916 AVDAPRRHKVSVHV 929
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/854 (35%), Positives = 474/854 (55%), Gaps = 40/854 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE
Sbjct: 130 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 189
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 190 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 249
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM +VV+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 250 SSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 309
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 310 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 369
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FR
Sbjct: 370 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFR 423
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 424 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 483
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I
Sbjct: 484 SFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI---- 537
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+AN F Y + + + L++
Sbjct: 538 LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYL 597
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 598 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEK 657
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 658 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 717
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 718 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 769
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 770 QLPDRGWFVYQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRT 825
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 826 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 884
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 885 HIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEML 944
Query: 830 QQWSPKCRRLAVRV 843
+P+ +++V V
Sbjct: 945 AVDAPRRHKVSVHV 958
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 309/895 (34%), Positives = 489/895 (54%), Gaps = 54/895 (6%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+SPL A +REV AVDSE
Sbjct: 101 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 161 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 220
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM +VV+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 221 SSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 280
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 281 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 340
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FR
Sbjct: 341 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFR 394
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 395 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 454
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I
Sbjct: 455 SFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI---- 508
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+AN F Y + + + L++
Sbjct: 509 LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYL 568
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 569 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEK 628
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 688
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 689 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 740
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 741 QLPDRGWFVYQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRT 796
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 797 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 855
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ ES +++ +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 856 HIQALAIRRLDKPKKLSAESAKYYGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEML 915
Query: 830 QQWSPKCRRLAVRV-------------WGCNTNIKESEKHS-KSALVIKDLTAFK 870
+P+ +++V V + C +I S+ + VI+++T FK
Sbjct: 916 AVDAPRRHKVSVHVLAREMDSCPVVGEFPCQNDINLSQAPALPQPEVIQNMTEFK 970
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/854 (34%), Positives = 466/854 (54%), Gaps = 40/854 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+ PL +REV AVDSE
Sbjct: 89 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSE 148
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++E+++K + YY
Sbjct: 149 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYY 208
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM + V+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 209 SSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 268
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L Q Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 269 IRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 328
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FR
Sbjct: 329 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFR 382
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP V+ EY+ E + ++I +L PEN+R+ +VSK
Sbjct: 383 FKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVRVAIVSK 442
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I A
Sbjct: 443 SFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN-ADLNGKFKLPTKNEFIPTNFEILA-- 498
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ D P I D + + W+K D+ F LP+A F Y + +C + L++
Sbjct: 499 LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYL 556
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI +F
Sbjct: 557 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKK 616
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 617 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 676
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ + + + + H LPS R V
Sbjct: 677 QLLSRLHIEALLHGNITKQAALGVMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 728
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 729 QLPDRGWFVYQRRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRT 784
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 785 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKAIEDMTEEAFQK 843
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ E ++W +I ++Y +D+ E LK++ K+D+I +YK L
Sbjct: 844 HIQALAIRRLDKPKKLSAECAKYWGEIISQQYNYDRDNIEVAYLKTLSKDDIIKFYKEML 903
Query: 830 QQWSPKCRRLAVRV 843
+P+ +++V V
Sbjct: 904 AVDAPRRHKVSVHV 917
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/854 (34%), Positives = 466/854 (54%), Gaps = 40/854 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+ PL +REV AVDSE
Sbjct: 130 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSE 189
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++E+++K + YY
Sbjct: 190 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYY 249
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM + V+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 250 SSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 309
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L Q Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 310 IRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 369
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FR
Sbjct: 370 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFR 423
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP V+ EY+ E + ++I +L PEN+R+ +VSK
Sbjct: 424 FKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVRVAIVSK 483
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I A
Sbjct: 484 SFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN-ADLNGKFKLPTKNEFIPTNFEILA-- 539
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ D P I D + + W+K D+ F LP+A F Y + +C + L++
Sbjct: 540 LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYL 597
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI +F
Sbjct: 598 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKK 657
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 658 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 717
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ + + + + H LPS R V
Sbjct: 718 QLLSRLHIEALLHGNITKQAALGVMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 769
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 770 QLPDRGWFVYQRRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRT 825
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 826 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKAIEDMTEEAFQK 884
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ E ++W +I ++Y +D+ E LK++ K+D+I +YK L
Sbjct: 885 HIQALAIRRLDKPKKLSAECAKYWGEIISQQYNYDRDNIEVAYLKTLSKDDIIKFYKEML 944
Query: 830 QQWSPKCRRLAVRV 843
+P+ +++V V
Sbjct: 945 AVDAPRRHKVSVHV 958
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 304/895 (33%), Positives = 483/895 (53%), Gaps = 54/895 (6%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+ PL +REV AVDSE
Sbjct: 101 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSE 160
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 161 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 220
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM + V+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 221 SSNLMAVCVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 280
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 281 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 340
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FR
Sbjct: 341 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFR 394
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 395 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 454
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I
Sbjct: 455 SFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI---- 508
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+A F Y + +C + L++
Sbjct: 509 LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYL 568
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 569 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEK 628
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 688
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 689 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 740
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 741 QLPDRGWFVYQQRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRT 796
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 797 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 855
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ E ++W +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 856 HIQALAIRRLDKPKKLSAECAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEML 915
Query: 830 QQWSPKCRRLAVRV-------------WGCNTNIKESEKHS-KSALVIKDLTAFK 870
+P+ +++V V + C +I S+ + VI+++T FK
Sbjct: 916 AVDAPRRHKVSVHVLAREMDSCPVVGEFPCQNDINLSQAPALPQPEVIQNMTEFK 970
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/854 (34%), Positives = 466/854 (54%), Gaps = 40/854 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+ PL +REV AVDSE
Sbjct: 130 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSE 189
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++E+++K + YY
Sbjct: 190 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYY 249
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM + V+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 250 SSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 309
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L Q Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 310 IRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 369
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FR
Sbjct: 370 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFR 423
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP V+ EY+ E + ++I +L PEN+R+ +VSK
Sbjct: 424 FKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVRVAIVSK 483
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I A
Sbjct: 484 SFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN-ADLNGKFKLPTKNEFIPTNFEILA-- 539
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ D P I D + + W+K D+ F LP+A F Y + +C + L++
Sbjct: 540 LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYL 597
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI +F
Sbjct: 598 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKK 657
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 658 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 717
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ + + + + H LPS R V
Sbjct: 718 QLLSRLHIEALLHGNITKQAALGVMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 769
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 770 QLPDRGWFVYQRRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRT 825
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLGY+V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 826 KEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKAIEDMTEEAFQK 884
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ E ++W +I ++Y +D+ E LK++ K+D+I +YK L
Sbjct: 885 HIQALAIRRLDKPKKLSAECAKYWGEIISQQYNYDRDNIEVAYLKTLSKDDIIKFYKEML 944
Query: 830 QQWSPKCRRLAVRV 843
+P+ +++V V
Sbjct: 945 AVDAPRRHKVSVHV 958
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 303/895 (33%), Positives = 483/895 (53%), Gaps = 54/895 (6%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
+LS+H GSSNA+T EHT Y+F++ E L+GAL RF+QFF+ PL +REV AVDSE
Sbjct: 101 FLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSE 160
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQIMKLYMNYY 123
+ + NDA RL QL+ T H F+KF GNK +L ++GI+++++++K + YY
Sbjct: 161 HEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYY 220
Query: 124 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK-LFRLEAVKD 182
LM + V+G E LD L + VV+LF+ V P+F + K L+++ +KD
Sbjct: 221 SSNLMAVCVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKD 280
Query: 183 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV--GDEG 240
+ L +T+ +P L + Y YL HL+GHEG GSL S LK +GW ++ G G G
Sbjct: 281 IRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARG 340
Query: 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR 300
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FR
Sbjct: 341 F------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFR 394
Query: 301 FAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360
F +++ Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSK
Sbjct: 395 FKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSK 454
Query: 361 SFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAND 420
SF D E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I
Sbjct: 455 SFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI---- 508
Query: 421 ISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFI 480
+ + P I D + + W+K D+ F LP+A F Y + +C + L++
Sbjct: 509 LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYL 568
Query: 481 HLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 540
LLKD LNE Y A +A L + + L V G+NDK P+LL KI+ +F +
Sbjct: 569 ELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEK 628
Query: 541 RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIP 599
RF++IKE +R+L N +P H+ Y ++ + + DE L ++L L AFIP
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIP 688
Query: 600 ELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 659
+L S+L+IE L HGN++++ A+ I + + + H LPS R V
Sbjct: 689 QLLSRLHIEALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREV 740
Query: 660 SV----------KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRT 709
+ +N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRT
Sbjct: 741 QLPDRGWFVYQQRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRT 796
Query: 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFEN 769
KEQLG++V PR + G F IQS K P YL+ R++ F+ +F+
Sbjct: 797 KEQLGFIVFSGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQK 855
Query: 770 YRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 829
+ L + L+K L+ E ++W +I ++Y FD+ E LK++ K D+I +YK L
Sbjct: 856 HIQALAIRRLDKPKKLSAECAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEML 915
Query: 830 QQWSPKCRRLAVRV-------------WGCNTNIKESEKHS-KSALVIKDLTAFK 870
+P+ +++V V + C +I S+ + VI+++T FK
Sbjct: 916 AVDAPRRHKVSVHVLAREMDSCPVVGEFPCQNDINLSQAPALPQPEVIQNMTEFK 970
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 243 bits (620), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 195/813 (23%), Positives = 355/813 (43%), Gaps = 39/813 (4%)
Query: 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE 64
YL HGGS NA T T ++ E++ + L GA+ R + PL+ + ERE AV++E
Sbjct: 87 YLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAE 146
Query: 65 FNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQ 124
A D R+ Q+ T H +KF GN ++L + + G +Q+ + + YY
Sbjct: 147 LTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETL--SDKPGNPVQQALKDFHEKYYS 204
Query: 125 GGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDV- 183
LMK V+ +PL L + F V KP+ TV + A K + V +
Sbjct: 205 ANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVP-VVTDAQKGIIIHYVPALP 263
Query: 184 -HILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGV-----G 237
+L + + + ++ K+++ + +L+G+ G+L +L+ +G ISA G
Sbjct: 264 RKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNG 323
Query: 238 DEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 297
+ G + +S LTD GL ++ ++ Y+ LLR+ K F EL ++ ++
Sbjct: 324 NSG--------VLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDI 375
Query: 298 EFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDV 357
+FR+ DY LA ++ P EH + + + +D + +K L P+N RI
Sbjct: 376 DFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWY 435
Query: 358 VSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIR 417
+S ++ ++ + Y + IS W+ D++L LP N +IP DFS+
Sbjct: 436 ISPKEPHNKTAYF---VDAPYQVDKISAQTFADWQK-KAADIALSLPELNPYIPDDFSLI 491
Query: 418 ANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKL-PRANTYFRINLKGGYDNVKNCILT 476
++ D P I+DE +R Y F P+A+ + D+ +N ++
Sbjct: 492 KSEKKYD-----HPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMF 546
Query: 477 ELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFL 536
L +L L+++ QASV + S + ++ L + G+ +LP L +L S+
Sbjct: 547 ALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYT 605
Query: 537 PSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYDVDEKLSILHGLSLADLM 595
++D+ + K + + + + + Q+L Q ++ DE+ IL ++L +++
Sbjct: 606 ATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVL 665
Query: 596 AFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANL 655
A+ L+S E + GN+++ +A ++ + ++ C +
Sbjct: 666 AYRDALKSGARPEFMVIGNMTEAQATTLARDVQK---------QLGADGSEWCRNKDVVV 716
Query: 656 VRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGY 715
+ SV + NS + G + A L +I++ F+NQLRT+EQLGY
Sbjct: 717 DKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGY 776
Query: 716 VVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLM 775
V P R +G F +QS+ P +L ER F F + ++
Sbjct: 777 AVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVI 836
Query: 776 AKLLEKDPSLTYESNRFWNQITDKRYMFDQSQK 808
++L+ +L E+++ FD K
Sbjct: 837 TQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDK 869
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 31/255 (12%)
Query: 8 KHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQ 67
+ G NA+T E T Y+ + EF L F++ + P ++ E + E L + E
Sbjct: 70 RXGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKL-LRPALREEDFQTEKLVILEEI-- 126
Query: 68 ALQNDACRLQQLQCHTSQL--GHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQG 125
A D + ++ GH G ++S+ +G + L N
Sbjct: 127 ARYQDRPGFXAYEWARARFFQGHPLGNSVLGTRESITALTREGXAAYHRRRYLPKN---- 182
Query: 126 GLMKLVVIGGEPLDTLQSWVVELFANVRKG------PQIKPQFTVEGTIWKACKLFRLEA 179
L G D L + L +G P + P F VE ++ +
Sbjct: 183 --XVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKAR------ 234
Query: 180 VKDVHILDLTWTLPCL-HQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGD 238
L L P + +QE + LAHLLG EG G LH L +G A S G+
Sbjct: 235 -----ALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGL-- 287
Query: 239 EGMHRSSIAYIFVMS 253
E R+ + +V +
Sbjct: 288 EEADRAGTFHAYVQA 302
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 10 GGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQAL 69
GG NA+T E+TCY+ ++ + A+ S F + E +E+E V E
Sbjct: 72 GGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVD 131
Query: 70 QNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMK 129
+ L + H+ ++G +E + E +++ YM+ + G
Sbjct: 132 DTPDDIVHDLLSSATYGKHSLG-------YPILGTVETLNSFNEGMLRHYMDRFYTGDYV 184
Query: 130 LVVIGGEPLDTLQSWVVELFANVR 153
++ + G D L + E F+ V+
Sbjct: 185 VISVAGNVHDELIDKIKETFSQVK 208
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 203 SEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIA 247
+E Y +LG +GRG++ S +G WA G+ GMH ++++
Sbjct: 86 AELYAVKVLGADGRGAISSIAQGLEWA-------GNNGMHVANLS 123
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 300 RFAEEQPQDDYAAELAGNLLIYPAEHVIYG 329
R+ E P DD+AAE+ L I P +V Y
Sbjct: 205 RWLEANPDDDFAAEVRAELNIAPKRYVTYA 234
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 23/196 (11%)
Query: 10 GGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMERE--VLAVDSEFNQ 67
G NAYT E+T Y+ + +E + A+ S ++ A+ERE V+ +SE
Sbjct: 77 GSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVD 136
Query: 68 ALQNDAC--RLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY-YQ 124
+ ++ L ++ LG ++++G ++ ++ +K Y+ Y+
Sbjct: 137 KMYDEVVFDHLHEITYKDQPLG-----------RTILGPIKNIKSITRTDLKDYITKNYK 185
Query: 125 GGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRL---EAVK 181
G M L G + L + + F +V K P + G + C+ R +
Sbjct: 186 GDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLP 245
Query: 182 DVHIL----DLTWTLP 193
HI ++W+ P
Sbjct: 246 TTHIAIALEGVSWSAP 261
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 23/196 (11%)
Query: 10 GGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMERE--VLAVDSEFNQ 67
G NAYT E+T Y+ + +E + A+ S ++ A+ERE V+ +SE
Sbjct: 77 GSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVD 136
Query: 68 ALQNDAC--RLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY-YQ 124
+ ++ L ++ LG ++++G ++ ++ +K Y+ Y+
Sbjct: 137 KMYDEVVFDHLHEITYKDQPLG-----------RTILGPIKNIKSITRTDLKDYITKNYK 185
Query: 125 GGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRL---EAVK 181
G M L G + L + + F +V K P + G + C+ R +
Sbjct: 186 GDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLP 245
Query: 182 DVHIL----DLTWTLP 193
HI ++W+ P
Sbjct: 246 TTHIAIALEGVSWSAP 261
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 50/262 (19%)
Query: 6 LSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE- 64
++ GG NA+T ++T Y+ ++ L S +M +EA L VD E
Sbjct: 73 VAAMGGRDNAFTTRDYTAYYQQVPSSRL------------SDVMGLEADRMANLVVDDEL 120
Query: 65 FNQALQ----------NDACRLQQLQC--HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQ 112
F + +Q +D R + + S + H + + +IG M N+
Sbjct: 121 FKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPY-------RVPVIGWMNDIQNMT 173
Query: 113 EQ-IMKLYMNYYQGGLMKLVVIGG---EPLDTLQSWVVELFANVRKGPQIKPQFTVEGTI 168
Q + Y +Y +VV+G E + L A V + P K Q +
Sbjct: 174 AQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARV-EAPARKQQGEPQQA- 231
Query: 169 WKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDY-----LAHLL-GHEGRGSLHSF 222
+ ++A ++ L L W +P + L KS D LA +L G++G
Sbjct: 232 --GVRRVTVKAPAELPYLALAWHVPAIVD--LDKSRDAYALEILAAVLDGYDGARMTRQL 287
Query: 223 LKGRGWATSISAGVGDEGMHRS 244
++G A +SAG G + + R
Sbjct: 288 VRGNKHA--VSAGAGYDSLSRG 307
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 50/262 (19%)
Query: 6 LSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSE- 64
++ GG NA+T ++T Y+ ++ L S +M +EA L VD E
Sbjct: 73 VAAMGGRDNAFTTRDYTAYYQQVPSSRL------------SDVMGLEADRMANLVVDDEL 120
Query: 65 FNQALQ----------NDACRLQQLQC--HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQ 112
F + +Q +D R + + S + H + + +IG M N+
Sbjct: 121 FKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPY-------RVPVIGWMNDIQNMT 173
Query: 113 EQ-IMKLYMNYYQGGLMKLVVIGG---EPLDTLQSWVVELFANVRKGPQIKPQFTVEGTI 168
Q + Y +Y +VV+G E + L A V + P K Q +
Sbjct: 174 AQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARV-EAPARKQQGEPQQA- 231
Query: 169 WKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDY-----LAHLL-GHEGRGSLHSF 222
+ ++A ++ L L W +P + L KS D LA +L G++G
Sbjct: 232 --GVRRVTVKAPAELPYLALAWHVPAIVD--LDKSRDAYALEILAAVLDGYDGARMTRQL 287
Query: 223 LKGRGWATSISAGVGDEGMHRS 244
++G A +SAG G + + R
Sbjct: 288 VRGNKHA--VSAGAGYDSLSRG 307
>pdb|3B5K|A Chain A, Crystal Structure Of Murine Interleukin-5
pdb|3B5K|B Chain B, Crystal Structure Of Murine Interleukin-5
Length = 113
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 635 PLPIEMRHQECVICLPSGANLVRNVSVKNKC-----ETNSVIELYFQIEQEK-GMELTRL 688
P+P HQ C+ + G ++++N +V+ + S+I+ Y ++EK G E R
Sbjct: 32 PVPTHKNHQLCIGEIFQGLDILKNQTVRGGTVERLFQNLSLIKKYIDRQKEKCGEERRRT 91
Query: 689 KALIDLFDEIL 699
+ +D E L
Sbjct: 92 RQFLDYLQEFL 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,557,100
Number of Sequences: 62578
Number of extensions: 1079697
Number of successful extensions: 2626
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2493
Number of HSP's gapped (non-prelim): 25
length of query: 880
length of database: 14,973,337
effective HSP length: 107
effective length of query: 773
effective length of database: 8,277,491
effective search space: 6398500543
effective search space used: 6398500543
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)