Query 002792
Match_columns 880
No_of_seqs 246 out of 2691
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 6.4E-98 1E-102 832.4 80.7 859 2-880 91-966 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 3.1E-97 7E-102 809.5 83.3 841 2-873 87-933 (937)
3 PRK15101 protease3; Provisiona 100.0 3.3E-95 7E-100 885.0 95.4 845 2-876 107-957 (961)
4 PTZ00432 falcilysin; Provision 100.0 2.3E-51 4.9E-56 490.0 56.6 791 9-851 161-1107(1119)
5 KOG2019 Metalloendoprotease HM 100.0 6.5E-44 1.4E-48 369.3 50.5 790 12-849 123-987 (998)
6 COG1026 Predicted Zn-dependent 100.0 1.2E-44 2.6E-49 398.7 47.2 782 10-848 89-959 (978)
7 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.3E-42 2.8E-47 387.9 53.8 608 2-752 63-695 (696)
8 COG0612 PqqL Predicted Zn-depe 100.0 1.1E-37 2.3E-42 345.8 23.9 344 2-362 79-432 (438)
9 KOG0960 Mitochondrial processi 100.0 2.8E-35 6.2E-40 287.6 22.6 340 2-361 95-449 (467)
10 KOG0961 Predicted Zn2+-depende 100.0 2E-30 4.4E-35 269.1 39.7 793 9-832 86-972 (1022)
11 COG0612 PqqL Predicted Zn-depe 100.0 1E-30 2.2E-35 290.0 33.1 405 431-851 17-435 (438)
12 KOG2067 Mitochondrial processi 100.0 3.1E-28 6.6E-33 238.9 17.4 334 3-360 87-443 (472)
13 TIGR02110 PQQ_syn_pqqF coenzym 99.9 3.4E-23 7.4E-28 232.4 30.1 326 434-773 3-345 (696)
14 KOG0960 Mitochondrial processi 99.9 5.7E-22 1.2E-26 194.8 29.2 402 433-856 36-458 (467)
15 PRK15101 protease3; Provisiona 99.9 1.7E-22 3.7E-27 247.1 31.2 400 430-849 43-464 (961)
16 KOG2067 Mitochondrial processi 99.9 2.7E-19 5.8E-24 176.4 27.8 400 433-856 27-453 (472)
17 PF05193 Peptidase_M16_C: Pept 99.8 2.1E-19 4.5E-24 175.4 16.5 178 110-295 2-184 (184)
18 PTZ00432 falcilysin; Provision 99.8 1.6E-17 3.5E-22 200.0 32.9 402 435-847 96-575 (1119)
19 KOG2583 Ubiquinol cytochrome c 99.7 2.6E-15 5.7E-20 149.1 25.5 327 5-361 87-420 (429)
20 PF05193 Peptidase_M16_C: Pept 99.7 2.5E-15 5.4E-20 146.5 18.0 180 588-774 1-184 (184)
21 COG1026 Predicted Zn-dependent 99.4 4.1E-11 8.8E-16 134.7 27.4 387 438-847 29-459 (978)
22 COG1025 Ptr Secreted/periplasm 99.3 2E-09 4.4E-14 120.9 32.3 403 432-850 25-444 (937)
23 KOG2583 Ubiquinol cytochrome c 99.3 9.7E-09 2.1E-13 103.0 31.5 380 435-851 27-424 (429)
24 PF00675 Peptidase_M16: Insuli 99.3 3.6E-12 7.8E-17 118.6 5.0 96 2-97 53-148 (149)
25 KOG0959 N-arginine dibasic con 99.2 2E-08 4.4E-13 115.2 31.0 401 432-848 29-447 (974)
26 KOG2019 Metalloendoprotease HM 99.2 9.7E-09 2.1E-13 109.3 25.8 390 436-849 59-498 (998)
27 PF00675 Peptidase_M16: Insuli 98.6 3E-07 6.5E-12 85.5 10.0 135 441-577 1-141 (149)
28 KOG0961 Predicted Zn2+-depende 98.6 4.9E-06 1.1E-10 89.2 19.6 302 518-831 108-445 (1022)
29 PF08367 M16C_assoc: Peptidase 97.8 7.7E-05 1.7E-09 75.4 8.0 152 430-590 69-240 (248)
30 PF03410 Peptidase_M44: Protei 68.5 59 0.0013 35.2 11.1 132 13-157 57-194 (590)
31 PHA03081 putative metalloprote 64.6 71 0.0015 34.7 10.8 132 13-157 57-194 (595)
32 PF09851 SHOCT: Short C-termin 56.6 19 0.00041 22.6 3.2 16 760-775 15-30 (31)
33 PRK11512 DNA-binding transcrip 37.3 1.5E+02 0.0032 26.9 7.4 66 219-295 74-139 (144)
34 PRK03573 transcriptional regul 31.1 2.2E+02 0.0047 25.7 7.5 65 219-295 66-130 (144)
35 PF05120 GvpG: Gas vesicle pro 31.0 1.6E+02 0.0034 23.5 5.4 40 739-780 28-67 (79)
36 PF09186 DUF1949: Domain of un 30.3 71 0.0015 23.0 3.4 44 2-45 11-54 (56)
37 PRK10870 transcriptional repre 27.4 2.7E+02 0.0058 26.3 7.6 65 219-295 91-155 (176)
38 PF08367 M16C_assoc: Peptidase 26.8 4.5E+02 0.0097 26.5 9.6 98 179-285 87-191 (248)
39 COG1761 RPB11 DNA-directed RNA 21.5 4.1E+02 0.0089 22.3 6.4 57 705-762 34-91 (99)
40 PRK05986 cob(I)alamin adenolsy 21.3 1.2E+02 0.0026 29.0 3.8 46 99-146 122-167 (191)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-98 Score=832.43 Aligned_cols=859 Identities=41% Similarity=0.681 Sum_probs=783.6
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHH
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+..||.++||..||+|+.++|+|+|++..++|+.+|++|+++|.+|+|.++.++||+.+|.+|++++.+++.+|..+..+
T Consensus 91 y~~~lsk~gGssNA~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~ 170 (974)
T KOG0959|consen 91 YSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLR 170 (974)
T ss_pred hHHHHHhcCCccccccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCccccCchhcchh-hhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCC
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIG-AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKP 160 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~-~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~ 160 (880)
.++.++|||++|++|+.++|.. |..+ .+++.|++||++||++++|+|||+|+.+++.++.++.+.|+.++++..+.|
T Consensus 171 ~l~~~~hp~~kF~tGN~~tL~~~p~~~--~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p 248 (974)
T KOG0959|consen 171 SLSNPGHPYSKFSTGNKKTLLEGPREI--DLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRP 248 (974)
T ss_pred HhcCCCCcchhccccchhhhhhccccc--hHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCC
Confidence 9999999999999999999984 3332 569999999999999999999999999999999999999999999887777
Q ss_pred CCcccccccc---cceEEEEEEcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHhhCccccccccccC
Q 002792 161 QFTVEGTIWK---ACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVG 237 (880)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~~~~ 237 (880)
.++ .+|+. .++.+.+.|..+...+.|.|++|+....++..+..++++++|+.++|+|..+|+++||+.+..++..
T Consensus 249 ~f~--~~p~~~e~~~~~~~v~pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~ 326 (974)
T KOG0959|consen 249 VFP--EPPFLPEELKKLVRVVPIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIP 326 (974)
T ss_pred ccc--CCCCChHHhCcEEEEEeccccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCC
Confidence 663 34443 4677888898888899999999999888899999999999999999999999999999999999887
Q ss_pred CCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCCChhHHHHHHHHh
Q 002792 238 DEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN 317 (880)
Q Consensus 238 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (880)
....+++ .|.|.+.+++.|.+++++++..++++++.++..|..++.+++...+-...|+++....+.+.+..++.+
T Consensus 327 ~~as~~~----~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~n 402 (974)
T KOG0959|consen 327 EFASGYS----FFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASN 402 (974)
T ss_pred ccccccc----eEEEEEEeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhh
Confidence 5444444 999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCCCCcccceecCccCcCCCHHHHHHHHhccCccceEEEEEecCCCCCCCCcccceeccccccccCCHHHHHhhcCCCCC
Q 002792 318 LLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEI 397 (880)
Q Consensus 318 ~~~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~ 397 (880)
++.+|+++++.+..++.++.++.|+.++..|.|.|+++++.+.++ .+.++..|+||+++|..+++|+++++.|.....
T Consensus 403 lq~~P~~~il~~~~ll~~~~p~~i~~~~~~L~p~n~~v~~~s~~~-~~~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~- 480 (974)
T KOG0959|consen 403 LQYYPVEDVLTGSYLLTEFDPDLIQEVLSSLVPSNMRVILVSRSF-EGKTDKAEPWYGTAYKVEDIPAEIIKEWENSHL- 480 (974)
T ss_pred cccCChHHhhcchhhhhhcChHHHHHHHHhcCcccceeeeeeecc-ccccccccceeccccccccCCHHHHHHhhccCc-
Confidence 999999999999999999999999999999999999999998887 577899999999999999999999999966555
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCeEEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHH
Q 002792 398 DVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTE 477 (880)
Q Consensus 398 ~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~ 477 (880)
.+++.+|.+|.|||++|++...+.... .+|.++..+...+|||++|+.|+.|++.+.+.+.+|+...++.+.+++.
T Consensus 481 ~~~l~lP~~nefI~t~f~~~~~~~~~~----~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~ 556 (974)
T KOG0959|consen 481 NPELHLPTPNEFIPTDFSILPAPIPKL----EYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLST 556 (974)
T ss_pred cccccCCCCCcccccccccccccCccc----cCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHH
Confidence 678999999999999999876543222 3899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccceEEEeeeCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc-c
Q 002792 478 LFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKN-T 556 (880)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~-~ 556 (880)
++..++.+.+.+..|.+..+|.+++++.+..|+.++++|++++++.+++.+.+.+.+..+++++|+.+|+.+..++++ .
T Consensus 557 l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~ 636 (974)
T KOG0959|consen 557 LYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHA 636 (974)
T ss_pred HHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred ccChhhHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCC--
Q 002792 557 NMKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQ-- 634 (880)
Q Consensus 557 ~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~-- 634 (880)
..+|+.++++.+..++.+..|+..+.++.++.++++|+..|...++.+..++++|.||+++++|.++++.+.+.++..
T Consensus 637 ~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l~~~~~ 716 (974)
T KOG0959|consen 637 FDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDILKSAAP 716 (974)
T ss_pred hccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhhhccCC
Confidence 455999999999999999999999999999999999999999999999999999999999999999988888877221
Q ss_pred ---CCCccccccceeEEcCCCCeEEEEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhChhhHHHhhhhc
Q 002792 635 ---PLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKE 711 (880)
Q Consensus 635 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~lRek~ 711 (880)
+.........+.+.++.|..+++... .+....++++..|+|+ +..+....+.+.++.+++...+|+.||+|+
T Consensus 717 ~~~p~~~~~~~~~~~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q~----~~~~~~~~~~~~L~~~li~ep~Fd~LRTke 791 (974)
T KOG0959|consen 717 NSRPLFRSEHLPRREIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQI----GVQDTRDNAVLGLLEQLIKEPAFDQLRTKE 791 (974)
T ss_pred CCccccccccCcccceeccCCceEEEEcc-cccCCCCceEEEEEEc----ccchhHHHHHHHHHHHHhccchHHhhhhHH
Confidence 11112344556778888988875543 5778899999999998 778889999999999999999999999999
Q ss_pred cccEEEEeeeeeeCCeeeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCChHHHHHH
Q 002792 712 QLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNR 791 (880)
Q Consensus 712 gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~ 791 (880)
+|||.|+++.....|..++.+.||+. .+++.++.+|..|++.+.+.+..|++++|+.-+.+++......+.++.....+
T Consensus 792 qLGYiv~~~~r~~~G~~~~~i~Vqs~-~~~~~le~rIe~fl~~~~~~i~~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~ 870 (974)
T KOG0959|consen 792 QLGYIVSTGVRLNYGTVGLQITVQSE-KSVDYLEERIESFLETFLEEIVEMSDEEFEKHKSGLIASKLEKPKNLSEESSR 870 (974)
T ss_pred hhCeEeeeeeeeecCcceeEEEEccC-CCchHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcCcchhHHHHH
Confidence 99999999999999999999999998 89999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCccHHHHHHHhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCCcchhhh-----c--cCCccccc
Q 002792 792 FWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEK-----H--SKSALVIK 864 (880)
Q Consensus 792 ~~~~i~~~~~~~~~~~~~~~~i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~~~~~-----~--~~~~~~~~ 864 (880)
+|..|..+.|.|+..++.++.+..+|++|+..++..++..++..++++++.+.|+........- . +.....|.
T Consensus 871 ~w~ei~~~~y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~~~a~~~~~lsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 950 (974)
T KOG0959|consen 871 YWDEIIIGQYNFDRDEKEVEALKKITKEDVINFFDEYIRKGAAKRKKLSVHVHGKQLDEEASSEKIKSQSENLLKIKEIT 950 (974)
T ss_pred HHHHHHhhhhcchhhHHHHHHHHhhhHHHHHHHHHhhccccchhcceEEEEecCchhhhhhhcccchhhhhhcccccchH
Confidence 9999999999999999999999999999999999999998888899999999998775321111 1 01112267
Q ss_pred ChHHHhccCcccccCC
Q 002792 865 DLTAFKLSSEFYQSLC 880 (880)
Q Consensus 865 ~~~~~~~~~~~~~~~~ 880 (880)
+++.||+..+.||..|
T Consensus 951 d~~~fk~~~~l~~~~~ 966 (974)
T KOG0959|consen 951 DIVAFKRSLPLYPLVK 966 (974)
T ss_pred HHHHhhcccccccccc
Confidence 9999999999999865
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-97 Score=809.51 Aligned_cols=841 Identities=29% Similarity=0.491 Sum_probs=756.0
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHH
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+..||++|||..||+|..++|+|+|++..++|+.+|++|+++|..|+|+++.++||+.+|.+|+.++..++.+|+++...
T Consensus 87 f~~fLskhgGs~NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~ 166 (937)
T COG1025 87 FSEFLSKHGGSHNASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQA 166 (937)
T ss_pred hHHHHHHcCCccccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCccccCchhcchh-hhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCC
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIG-AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKP 160 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~-~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~ 160 (880)
.++.++||++||++||.+||.. | |...+++|++||++||+|+||++||+|+-+++++++++.++||.||++....+
T Consensus 167 ~~~np~HP~srFs~GN~~TL~~~p---~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p 243 (937)
T COG1025 167 LTANPGHPLSKFSTGNLETLSDKP---GLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIP 243 (937)
T ss_pred hhcCCCCCccccCCCChhhhccCC---CchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCC
Confidence 9999999999999999999984 3 44889999999999999999999999999999999999999999998876555
Q ss_pred CCcccccccc---cceEEEEEEcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHhhCccccccccccC
Q 002792 161 QFTVEGTIWK---ACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVG 237 (880)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~~~~ 237 (880)
+. +.|+.. .++++.+.|..+..++.|.|++++....+...+..++++|||++++|+|...|+++||+.+++++..
T Consensus 244 ~~--p~p~~~d~~t~~ii~i~p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~ 321 (937)
T COG1025 244 PI--PVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLD 321 (937)
T ss_pred CC--CCCCCChHHhCceEEeccCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccc
Confidence 54 223333 6788888888888899999999999887788999999999999999999999999999999999887
Q ss_pred CCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCCChhHHHHHHHHh
Q 002792 238 DEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN 317 (880)
Q Consensus 238 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (880)
.... ++|.|.|.+.+|++|.++.++|+..++++|+.++.+|+....+++++++....|++...+.+.+.+..++.+
T Consensus 322 ~~~~----n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~ 397 (937)
T COG1025 322 PISG----NYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADN 397 (937)
T ss_pred cccC----CcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHh
Confidence 7432 455999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred CCCCCcccceecCccCcCCCHHHHHHHHhccCccceEEEEEecCCCCCCCCcccceeccccccccCCHHHHHhhcCCCCC
Q 002792 318 LLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEI 397 (880)
Q Consensus 318 ~~~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~ 397 (880)
|..+|++.++.....+...++++++.++..+.|+|+++++.++.. +.++.+.+|+.+|.+.++..+.++.|+....
T Consensus 398 m~~~p~~~~~~~~~~~~~yd~~~~~~~l~~~~pen~R~~lis~~~---~~~~~a~~~~~py~v~~~~~~~~~~~~~~~~- 473 (937)
T COG1025 398 MEREPVEHTLYASLVLPRYDPKAIQERLALMTPENARLWLISKLE---EHDKAAYFYGFPYQVDDYTAQPLDAWQQKAD- 473 (937)
T ss_pred cccCChhhhhchhhcccccCHHHHHHHHHhhCccceEEEEecCCC---CccccceeecCcceecchhhhhhhhhhcccc-
Confidence 988888888888888999999999999999889999999999863 4589999999999999999999999988776
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCeEEecCCCceEEEeccCcccc-cceEEEEEEEcCCCcCCHHHHHHH
Q 002792 398 DVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKL-PRANTYFRINLKGGYDNVKNCILT 476 (880)
Q Consensus 398 ~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~~~~~~~~~~-p~~~i~~~~~~~~~~~~~~~~~~~ 476 (880)
.+++.+|.+|+|||.++++......-+ .|..+....|.++||++++.|.. ||+.+++.|++|....++++.++.
T Consensus 474 ~~~l~lP~~N~fIp~~~~~~~~~~~~~-----~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~ 548 (937)
T COG1025 474 SIELSLPEPNPFIPDDVSLIKSEKKFT-----FPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLT 548 (937)
T ss_pred cccccCCCCCCCCCccccccccccCCC-----CchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHH
Confidence 667889999999999998854433322 68889999999999999999987 999999999999998899999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccceEEEeeeCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcc
Q 002792 477 ELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNT 556 (880)
Q Consensus 477 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~ 556 (880)
.|.+.+..+.+.+..|++..+|+++++..+..|+.++++|+++.++.++..+.+.+.+..++++.|..+|..+.+.+++.
T Consensus 549 ~l~~~la~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a 628 (937)
T COG1025 549 ELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNA 628 (937)
T ss_pred HHHHHHHHHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-hhhHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCC
Q 002792 557 NMK-PLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQP 635 (880)
Q Consensus 557 ~~~-p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~ 635 (880)
..+ |..++...+..++..+.|+..+.++.+++++.+++..|...++++.+++++|.||++.+++..+.+.....++..+
T Consensus 629 ~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~ 708 (937)
T COG1025 629 LTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIG 708 (937)
T ss_pred hhcCCHHHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccC
Confidence 887 9999999999999999999999999999999999999999999999999999999999999999988776666443
Q ss_pred CCccccccceeEEcCCCCeEEEEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhChhhHHHhhhhccccE
Q 002792 636 LPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGY 715 (880)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y 715 (880)
. .+...+.+.++++....+......+.+.+++++ +.. ...+++..++..+++++++..+|.+||+|+||||
T Consensus 709 s---~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~--~~~----~~~~~~~~a~s~Ll~~l~~~~ff~~LRTkeQLGY 779 (937)
T COG1025 709 S---TWYRNPSVYLLKGGTRIFETVGGESDSANAAIL--YPQ----QYDEIKSSALSSLLGQLIHPWFFDQLRTKEQLGY 779 (937)
T ss_pred C---cccCCCceeccCCCeeEeeeccCCcccccceeE--ecc----ccchHHHHHHHHHHHHHHhHHhHHHhhhhhhcce
Confidence 2 122334444555555554444444444455433 323 3336888999999999999999999999999999
Q ss_pred EEEeeeeeeCCeeeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002792 716 VVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQ 795 (880)
Q Consensus 716 ~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~ 795 (880)
.|+|++....+..++.|++||....|+++.++|+.|++.+...+.+|++++|+..|+.+++++...+.|+..++.++|..
T Consensus 780 ~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~~ms~e~Fe~~k~alin~il~~~~nl~e~a~r~~~~ 859 (937)
T COG1025 780 AVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELREMSEEDFEQIKKALINQILQPPQNLAEEASRLWKA 859 (937)
T ss_pred EEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999999999999999999998889999999999999998888899999999999999999999999999999999999
Q ss_pred HhcCCCCCCccHHHHHHHhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCCcchhhhccCCcccccChHHHhccC
Q 002792 796 ITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEKHSKSALVIKDLTAFKLSS 873 (880)
Q Consensus 796 i~~~~~~~~~~~~~~~~i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (880)
+.+|.++|+++++.++.++.+|++++.+++..++... .+.++.+.|.|+...- + -.++.+|+.+++..+++.+.
T Consensus 860 ~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~--~g~~l~~~i~g~~~e~-~-~~~~~~~~~~~~~~~~~~~~ 933 (937)
T COG1025 860 FGRGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYE--QGSKLLSHIRGQNGEA-E-YAHPEGWTVLENVSALQQTA 933 (937)
T ss_pred hccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhccc--ccceeeeeeecccccc-c-cccCCceeeehhhhhhcccc
Confidence 9999999999999999999999999999999999753 6789999999943332 2 23457999999888887654
No 3
>PRK15101 protease3; Provisional
Probab=100.00 E-value=3.3e-95 Score=885.05 Aligned_cols=845 Identities=24% Similarity=0.391 Sum_probs=721.5
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHH
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.++|+++||++||+|+.|+|+|++++++++|+.+|++|++++.+|.|+++++++||++|.+|+++..++|.+++.+.+.
T Consensus 107 ~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~ 186 (961)
T PRK15101 107 LAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSA 186 (961)
T ss_pred HHHHHHHhCCCccceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCCC
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ 161 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~~ 161 (880)
+.+|++|||+++.+|+.++|.+.. ...+.++|++||++||+|+||+|||+||+|+++++++++++|+.||++..+.+.
T Consensus 187 ~~~~~~hp~~~~~~G~~etl~~~~--~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~ 264 (961)
T PRK15101 187 ETINPAHPGSRFSGGNLETLSDKP--GSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPE 264 (961)
T ss_pred hhCCCCCCcccCCCCCHHHhhcCC--chHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCC
Confidence 999999999999999999999710 003799999999999999999999999999999999999999999877543222
Q ss_pred Ccccccccc---cceEEEEEEcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHhhCccccccccccCC
Q 002792 162 FTVEGTIWK---ACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGD 238 (880)
Q Consensus 162 ~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~~~~~ 238 (880)
.. .++.. .+..+...+..+..++.+.|+.|+....+...+..+++.+||+++.++|+++|+++||+|+++++...
T Consensus 265 ~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~ 342 (961)
T PRK15101 265 IT--VPVVTDAQKGIIIHYVPAQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADP 342 (961)
T ss_pred CC--CCCCCHHHcCeEEEEEECCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeecccc
Confidence 21 12211 33445556666677899999999876544567889999999998888999999999999999887653
Q ss_pred CCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCCChhHHHHHHHHhC
Q 002792 239 EGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL 318 (880)
Q Consensus 239 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (880)
.. ..+.|.|.|++.+++.|.++++++++.++++|+++++.|+++++++++|+.+...|.+.....+.+.+..++..+
T Consensus 343 ~~---~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (961)
T PRK15101 343 MV---DRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTM 419 (961)
T ss_pred cc---CCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHh
Confidence 11 113569999999999777799999999999999999999999999999999999998776666777888899998
Q ss_pred CCCCcccceecCccCcCCCHHHHHHHHhccCccceEEEEEecCCCCCCCCcccceeccccccccCCHHHHHhhcCCCCCC
Q 002792 319 LIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEID 398 (880)
Q Consensus 319 ~~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~ 398 (880)
..+++++++.+...++++++++|+++++.|.++|+.+++++|++ ..++.++||+++|++.+|+..+++.|..... .
T Consensus 420 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~n~~i~~~~~~~---~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~-~ 495 (961)
T PRK15101 420 LRVPVEHTLDAPYIADRYDPKAIKARLAEMTPQNARIWYISPQE---PHNKTAYFVDAPYQVDKISEQTFADWQQKAQ-N 495 (961)
T ss_pred hhCCHHHheeCchhhhcCCHHHHHHHHhhcCHhHEEEEEEeCCC---CCCccccccCCcceeecCCHHHHHHHhcCCC-C
Confidence 88888899998889999999999999999999999999999975 5678899999999999999999999987655 6
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCCCcCCCCCeEEecCCCceEEEeccCcc-cccceEEEEEEEcCCCcCCHHHHHHHH
Q 002792 399 VSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTF-KLPRANTYFRINLKGGYDNVKNCILTE 477 (880)
Q Consensus 399 ~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~~~~~~~~-~~p~~~i~~~~~~~~~~~~~~~~~~~~ 477 (880)
+.+.+|++|+|||++|.+....... ..|..+..+||++|||++++.| ..|++.+++.+.+|....++.+.+++.
T Consensus 496 ~~l~lP~~n~fip~~~~~~~~~~~~-----~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~ 570 (961)
T PRK15101 496 IALSLPELNPYIPDDFSLIKADKAY-----KHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFA 570 (961)
T ss_pred ccCCCCCCCCccCCCCeeccCCCCC-----CCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHH
Confidence 6789999999999999986543222 3699999999999999999988 599999999999999888899999999
Q ss_pred HHHHHHHHHHHhhhhhhccccceEEEeeeCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccc
Q 002792 478 LFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTN 557 (880)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~ 557 (880)
|++.++...+.+..+.+..+|++++++ +.+|+.++++|++++++.+++++.+.+.+|.|++++|+++|+.+++++++..
T Consensus 571 L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~ 649 (961)
T PRK15101 571 LNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAE 649 (961)
T ss_pred HHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999 7899999999999999999999999999999999999999999999999876
Q ss_pred cC-hhhHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCC
Q 002792 558 MK-PLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPL 636 (880)
Q Consensus 558 ~~-p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~ 636 (880)
.+ |...+...+..+...+.+...++.+.|+++|++|+++|++++|.+.+++++|+||++.+++.++++.+.+.++..+.
T Consensus 650 ~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~ 729 (961)
T PRK15101 650 KGKAYEQAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGT 729 (961)
T ss_pred ccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCc
Confidence 65 66666554443333333446778899999999999999999999999999999999999999999998888865321
Q ss_pred CccccccceeEEcCCCCeEEEEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhChhhHHHhhhhccccEE
Q 002792 637 PIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYV 716 (880)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~ 716 (880)
.+...+...++++....+. .. .....+.+++.+++. +..+....++..+|+++++++||++|||++||||+
T Consensus 730 ---~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~----g~~~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~ 800 (961)
T PRK15101 730 ---EWWRGKDVVVDKKQSVNFE-KA-GSSTDSALAAVYVPT----GYDEYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYA 800 (961)
T ss_pred ---ccccccceEeCCCCeEEEe-cC-CCCCCCeEEEEEEeC----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhceE
Confidence 1111122223333333322 12 123346666667766 55578889999999999999999999999999999
Q ss_pred EEeeeeeeCCeeeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002792 717 VECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQI 796 (880)
Q Consensus 717 v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i 796 (880)
|+|+.....+..++.+++|+..++|+++..+|..|+.++...+++||++||+++|+++++++....+++.+++.++|..+
T Consensus 801 V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~~lt~eE~~~~k~~l~~~~~~~~~sl~~~a~~~~~~i 880 (961)
T PRK15101 801 VFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLRAMKPEEFAQYQQALINQLLQAPQTLGEEASRLSKDF 880 (961)
T ss_pred EEEEeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999988888899999999878999999999999998766567999999999999999999999999999999999999
Q ss_pred hcCCCCCCccHHHHHHHhCCCHHHHHHHHHHh-cccCCCCcceEEEEEecCCCCcchhhhccCCcccccChHHHhccCcc
Q 002792 797 TDKRYMFDQSQKEAEDLKSIKKNDVISWYKTY-LQQWSPKCRRLAVRVWGCNTNIKESEKHSKSALVIKDLTAFKLSSEF 875 (880)
Q Consensus 797 ~~~~~~~~~~~~~~~~i~~vT~edi~~~~~~~-l~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (880)
..++++|++.+..++.|++||++||++++++| +.+. ...++++|.|....-.. .....++..++|+..||+..++
T Consensus 881 ~~~~~~fd~~~~~~~~i~~vT~edv~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 956 (961)
T PRK15101 881 DRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVIEPQ---GLAILSQISGSQNGKAD-YAHPKGWKTWENVSALQQTLPV 956 (961)
T ss_pred hcCCCCcChHHHHHHHHHcCCHHHHHHHHHHHhcCCC---CCEEEEEeeccCccccc-cccccCCeeeCCHHHHhhcCcc
Confidence 88888999999999999999999999999998 6543 44788888888653111 1112356679999999988776
Q ss_pred c
Q 002792 876 Y 876 (880)
Q Consensus 876 ~ 876 (880)
.
T Consensus 957 ~ 957 (961)
T PRK15101 957 M 957 (961)
T ss_pred c
Confidence 3
No 4
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=2.3e-51 Score=490.01 Aligned_cols=791 Identities=13% Similarity=0.066 Sum_probs=519.0
Q ss_pred cCCccccccCCCCceEEEeeCc-cchHHHHHHHHhhccccCCCchhH--H---------HH-------------------
Q 002792 9 HGGSSNAYTETEHTCYHFEIKR-EFLKGALMRFSQFFISPLMKVEAM--E---------RE------------------- 57 (880)
Q Consensus 9 ~Gg~~na~T~~d~T~y~~~~~~-~~l~~~l~~l~~~~~~p~~~~~~~--~---------~e------------------- 57 (880)
.|+.+||+|+.|+|+|++.+.+ +++..+|++++|++++|.|+++++ . ++
T Consensus 161 l~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~ 240 (1119)
T PTZ00432 161 FNSFLNAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVS 240 (1119)
T ss_pred cCCCccccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccc
Confidence 3488999999999999999877 479999999999999999998863 2 22
Q ss_pred -HHhHHHHHhhhcCChHHHHHHHHHhhCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCC
Q 002792 58 -VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGE 136 (880)
Q Consensus 58 -~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~ 136 (880)
+++|.+|+++..++|.+++++.+++.+| +|||+++++|++++|.+ ++.+++++||++||+|+||+|+|+||+
T Consensus 241 ~kgVV~~Emk~~~~~p~~~~~~~~~~~lf-~~pY~~~~~G~~~~I~~------lt~e~l~~Fh~~~Y~P~N~~l~v~Gdi 313 (1119)
T PTZ00432 241 YSGIVYSEMKKRFSDPLSFGYSVIYQNLF-SNVYKYDSGGDPKDIVE------LTYEELVEFYKTYYGPKTATVYFYGPN 313 (1119)
T ss_pred hhhHHHHHHHHhhCCHHHHHHHHHHHHHh-CCCCCCCCCCChHhhcc------CCHHHHHHHHHHhcCccceEEEEEcCC
Confidence 8899999999999999999999999999 99999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcccccCCCCCC----C---CCccc-ccccccceEEEE---EEcCcceEEEEE-EecC-Cc--------
Q 002792 137 PLDTLQSWVVELFANVRKGPQIK----P---QFTVE-GTIWKACKLFRL---EAVKDVHILDLT-WTLP-CL-------- 195 (880)
Q Consensus 137 ~~~~l~~~i~~~f~~~~~~~~~~----~---~~~~~-~~~~~~~~~~~~---~~~~~~~~l~i~-~~~~-~~-------- 195 (880)
|++++.++++++|+.+|...... + ..+.+ .+.+..++.+.. .+...+..+.++ |.++ ..
T Consensus 314 d~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~ 393 (1119)
T PTZ00432 314 DVTERLEFVDNYLTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDK 393 (1119)
T ss_pred CHHHHHHHHHHHHhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCcccccccccc
Confidence 99999999999999987653210 0 00000 011122232221 111223445565 9874 31
Q ss_pred --hhhhhcChHHHHHHHhcCCCCCcHHHHHhhCcccccccc-ccCCCCCCCcccceEEEEEEE-cCHhh----HHhHHHH
Q 002792 196 --HQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISA-GVGDEGMHRSSIAYIFVMSIH-LTDSG----LEKIFDI 267 (880)
Q Consensus 196 --~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~-~~~~~~~~~~~~~g~~~i~~~-~~~~~----~~~~~~v 267 (880)
.+..+..++.+|+++|++++.++|++.|+++||++++.. +... .. ..+.|.|.+. +.... .++++++
T Consensus 394 ~~~d~~~~~AL~VLs~lLggg~sS~L~q~LrE~GLa~svv~~~~~~-~~----~~~~f~I~l~g~~~~~~~~~~~~~~ev 468 (1119)
T PTZ00432 394 SLIDPVDYLALLVLNYLLLGTPESVLYKALIDSGLGKKVVGSGLDD-YF----KQSIFSIGLKGIKETNEKRKDKVHYTF 468 (1119)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCccHHHHHHHhcCCCcCCCcCcccC-CC----CceEEEEEEEcCChHhccchhhhHHHH
Confidence 222478899999999999888889999999999998633 3322 11 3458888875 33211 1357899
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCC---ChhHHHHHHHHhCC-CCCcccceecCccCcCC------C
Q 002792 268 IGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQ---PQDDYAAELAGNLL-IYPAEHVIYGEYMYEVW------D 337 (880)
Q Consensus 268 ~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~---~~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~v------t 337 (880)
.+.|+++|++++++|+++++++++++.+...++-.... ....++..++..|. +.+|.+++.....++.+ +
T Consensus 469 ~~~I~~~L~~l~~eGi~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~ 548 (1119)
T PTZ00432 469 EKVVLNALTKVVTEGFNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNE 548 (1119)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999887776665421110 13456666777764 46776665544433322 3
Q ss_pred HHHHHHHHhc-cCccceEEE-EEecCCCCCCCC---ccc----ceeccccccccCCH-----HHHHhhcCCCCCCCCCCC
Q 002792 338 EEMIKHLLGF-FMPENMRID-VVSKSFAKSQDF---HYE----PWFGSRYTEEDISP-----SLMELWRNPPEIDVSLQL 403 (880)
Q Consensus 338 ~~~i~~~~~~-l~~~~~~i~-~~~p~~~~~~~~---~~~----~~~~~~y~~~~i~~-----~~~~~~~~~~~~~~~~~~ 403 (880)
...+++++++ |.+++++++ ++.|.....-.. +.+ +-+....+.+++.. +.++.|++.++ .+
T Consensus 549 ~~y~e~Li~k~ll~N~h~~~v~~~p~~s~~~~~~~~~~e~~~L~~~~~~Ls~ee~~~i~~~~~~l~~~q~~~~-~~---- 623 (1119)
T PTZ00432 549 SKYLEKLIEKHLLNNNHRVTVHLEAVESSKYEKEFNKLVKDELKERLSHLTKEQVDEMEKAYEKFKKEREADD-DP---- 623 (1119)
T ss_pred cHHHHHHHHHHccCCCeeeEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-Ch----
Confidence 4578899985 656666444 444542000000 000 00011111111111 22344554332 11
Q ss_pred CCCCCCCCCCccccccCCCCCCcCCCCCeE---------------EecCCCceEEEeccCcccccceEEEEEEEcCCCcC
Q 002792 404 PSQNEFIPTDFSIRANDISNDLVTVTSPTC---------------IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYD 468 (880)
Q Consensus 404 p~~~~~i~~~~~~~~~~~~~~~~~~~~p~~---------------~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~ 468 (880)
+.-..+|. +++.+...... ..|.. ....+|+++++++..+ .+.+|+.+.++....
T Consensus 624 -e~l~~lP~-l~~~DI~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T----nGi~y~~~~fdl~~l 693 (1119)
T PTZ00432 624 -EHLDSFPI-LSLSDLNKETE----EIPTKLYKLSSDSLKENMDLDSDGGSVTVLVHPIES----RGILYLDFAFSLDSL 693 (1119)
T ss_pred -hHHhhcCC-CcHHHcCCccc----CCcchhhhcccccccccccccccCCCcceEEEecCC----CCeEEEEEEecCCCC
Confidence 10111111 11111111000 02211 1235788998887655 568899888887767
Q ss_pred CHHHHHHHHHHHHHHHHHHHh-hh-------hhhccccceEEEeeeC--------------ceEEEEEeccCCCHHHHHH
Q 002792 469 NVKNCILTELFIHLLKDELNE-II-------YQASVAKLETSVSIFS--------------DKLELKVYGFNDKLPVLLS 526 (880)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~-~~-------~~~~~~g~~~~~~~~~--------------~~~~~~~~g~~~~l~~~l~ 526 (880)
+.+...++.|++.+++...++ .. .....+|+++++.... ..+.++++++.++++.+++
T Consensus 694 ~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~ 773 (1119)
T PTZ00432 694 TVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVD 773 (1119)
T ss_pred CHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEEEEEhhhhHHHHHH
Confidence 788899999999999864321 21 2234578777654432 3689999999999999999
Q ss_pred HHHHHHhcCCCCH-HHHHHHHHHHHHHHhccccC-hhhHHHHHHHHhhcCC-----CCC---HHHHHHHhc-c-C--C--
Q 002792 527 KILAIAKSFLPSD-DRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQS-----FYD---VDEKLSILH-G-L--S-- 590 (880)
Q Consensus 527 ll~~~l~~p~~~~-~~f~~~k~~~~~~~~~~~~~-p~~~a~~~~~~~l~~~-----~~~---~~~~~~~l~-~-i--t-- 590 (880)
++.+++.++.|+. +++..+.++.+..+.+...+ ++..|..++..-+... .+. ....+.++. . . .
T Consensus 774 l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~ 853 (1119)
T PTZ00432 774 IVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLLFLKETLVPLAEKDWS 853 (1119)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999974 55888888888888887774 7777776665544321 111 111222221 1 1 1
Q ss_pred --HHHHHHHHHHHHhccceeEEeecCCCH-HHHHHHHHHHHhhhcCC----C--CCccccccceeEE---cC--CCCeEE
Q 002792 591 --LADLMAFIPELRSQLYIEGLCHGNLSQ-EEAIHISNIFKSIFSVQ----P--LPIEMRHQECVIC---LP--SGANLV 656 (880)
Q Consensus 591 --~~dl~~~~~~~~~~~~~~~~v~Gd~~~-~~~~~l~~~~~~~l~~~----~--~~~~~~~~~~~~~---~~--~~~~~~ 656 (880)
.+.|...++++++..++.+.|+|+.+. +.+.+.+..+.+.++.. . .....+.. ..+. .+ .....+
T Consensus 854 ~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~ 932 (1119)
T PTZ00432 854 KVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDKVWVK-EVLDKKLMESVDKNEFI 932 (1119)
T ss_pred HHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccccccccccccccccc-ccccccccCCcccceEE
Confidence 245777778888889999999999744 44555555566655321 1 00000100 0000 00 011111
Q ss_pred EEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhC-hhhHHHhhhhccccEEEEeeeeeeCCeeeEEEEEe
Q 002792 657 RNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQ 735 (880)
Q Consensus 657 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~~~i~ 735 (880)
. .|...+.+..... . .....+..+++.|+..+|+ ++|+.+||++ |++|++++.... . +.+.|+..
T Consensus 933 -~----~p~~V~yv~~~~~-~----~~~~~~~~~~l~Vl~~~L~~~yLw~~IR~~-GGAYG~~~~~~~-~--G~~~f~SY 998 (1119)
T PTZ00432 933 -V----LPTRVNFVGMGGK-L----FDKSDKVDGSFQVIVHYLKNSYLWKTVRMS-LGAYGVFADLLY-T--GHVIFMSY 998 (1119)
T ss_pred -E----ccCceeEEEEecc-c----ccCCCccCHHHHHHHHHHccccchHHHccc-CCccccCCccCC-C--CeEEEEEe
Confidence 1 1122233222111 0 1122344678888888874 7899999987 788988866643 2 33334433
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCCCccHHHHHH
Q 002792 736 SSKYNPIYLQERIDNFISGLDELLE---GLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAED 812 (880)
Q Consensus 736 s~~~~~~~~~~~i~~~~~~~~~~~~---~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 812 (880)
++| ++.+.++.|.+....+.+ .+|++++++++-+.++.+.. +.++..++...+...+.|. ..+.++++++.
T Consensus 999 ---RDP-n~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~~D~-p~~p~~~g~~~~~~~l~g~-t~e~rq~~R~~ 1072 (1119)
T PTZ00432 999 ---ADP-NFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISNIDK-PLHVDELSKLALLRIIRNE-SDEDRQKFRKD 1072 (1119)
T ss_pred ---cCC-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 445 345677777666665543 49999999999999999876 6777777777766666664 77888999999
Q ss_pred HhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCCcc
Q 002792 813 LKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 851 (880)
Q Consensus 813 i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~ 851 (880)
|-++|++||+++|.+|... ...-.+||+|++.++.
T Consensus 1073 il~~t~edi~~~a~~~~~~----~~~~~~~v~g~~~~~~ 1107 (1119)
T PTZ00432 1073 ILETTKEDFYRLADLMEKS----KEWEKVIAVVNSKTSD 1107 (1119)
T ss_pred HHcCCHHHHHHHHHHHHhh----hccCeEEEEECHHHhh
Confidence 9999999999999999963 3467899999977764
No 5
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-44 Score=369.32 Aligned_cols=790 Identities=13% Similarity=0.053 Sum_probs=528.3
Q ss_pred ccccccCCCCceEEEe-eCccchHHHHHHHHhhccccCCCchhHHHH------------------HHhHHHHHhhhcCCh
Q 002792 12 SSNAYTETEHTCYHFE-IKREFLKGALMRFSQFFISPLMKVEAMERE------------------VLAVDSEFNQALQND 72 (880)
Q Consensus 12 ~~na~T~~d~T~y~~~-~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e------------------~~~v~~E~~~~~~~~ 72 (880)
.+||+|..|+|.|.|. ..++++.++.+++.|....|.+.+.+|.+| +++|.+||++..++|
T Consensus 123 FmNAfT~pD~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~ 202 (998)
T KOG2019|consen 123 FMNAFTAPDYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDP 202 (998)
T ss_pred HHhhccCCCcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccCh
Confidence 4799999999999996 667899999999999999999999999998 799999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccc
Q 002792 73 ACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANV 152 (880)
Q Consensus 73 ~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~ 152 (880)
++.+++.++..++|++.|+-.+.|++-.|.+ ++.+++++||++||+|+|+.+..+|+++++++..+++..|...
T Consensus 203 ~~if~~~~Qq~L~p~~tYgv~SGGDPl~Ipd------Lt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~ 276 (998)
T KOG2019|consen 203 DYIFGMLFQQALFPENTYGVNSGGDPLDIPD------LTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPF 276 (998)
T ss_pred hHHHHHHHHHhhCccccccccCCCCcccCcc------ccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999998777665
Q ss_pred cCCCCCCCCCcccccccccceEEEE-EE------cCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHhh
Q 002792 153 RKGPQIKPQFTVEGTIWKACKLFRL-EA------VKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKG 225 (880)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~ 225 (880)
.+.....+.. ...++...+.+.. .+ ...+....+.|-.+...+.++..++.+|++++-++.++-+|+.|.+
T Consensus 277 sk~~~s~kv~--~qk~f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiE 354 (998)
T KOG2019|consen 277 SKRELSSKVT--FQKLFDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIE 354 (998)
T ss_pred ccccccCccc--cccccccCceeeeecCCCCCCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 4333221111 1123333333222 11 1224456777888888887889999999999998666669999999
Q ss_pred CccccccccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCC
Q 002792 226 RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQ 305 (880)
Q Consensus 226 ~gl~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~ 305 (880)
.|+....++...+.+ .+..+.|+|.+.--. .++++.+.+.|...++++.+.||+.+.++.+-..++.+.+.+...
T Consensus 355 SGLGtEfsvnsG~~~---~t~~~~fsVGLqGvs--eediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst~ 429 (998)
T KOG2019|consen 355 SGLGTEFSVNSGYED---TTLQPQFSVGLQGVS--EEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQSTG 429 (998)
T ss_pred cCCCcccccCCCCCc---ccccceeeeeecccc--HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccccc
Confidence 999876665555421 123457777765433 379999999999999999999999988888776666666554433
Q ss_pred ChhHHHHHHHHhC-CCCCcccceecCccCc-------CCCHHHHHHHHhc-cCccceEEEE-EecCCCCCC-CCccccee
Q 002792 306 PQDDYAAELAGNL-LIYPAEHVIYGEYMYE-------VWDEEMIKHLLGF-FMPENMRIDV-VSKSFAKSQ-DFHYEPWF 374 (880)
Q Consensus 306 ~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~-------~vt~~~i~~~~~~-l~~~~~~i~~-~~p~~~~~~-~~~~~~~~ 374 (880)
--...+..+...| .+.+|-+.+.+.+.+. +-+..-++.++++ +..+..++++ ..|+.+... ....++ -
T Consensus 430 fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~-t 508 (998)
T KOG2019|consen 430 FGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEA-T 508 (998)
T ss_pred hhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHH-H
Confidence 3334555566666 4677777766544333 2356678888885 5444444433 344321010 000000 0
Q ss_pred ccccccccCCHHHHHhhcCC-CCCCCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCeEEecCCCceEEEeccCccccc
Q 002792 375 GSRYTEEDISPSLMELWRNP-PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLP 453 (880)
Q Consensus 375 ~~~y~~~~i~~~~~~~~~~~-~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~~~~~~~~~~p 453 (880)
..+-...++..+.++.+... ......-..|+...|+|. +.+.+.+...+ ..|..+.+-||+++.+.-..+
T Consensus 509 kL~ek~~alteeD~~ei~k~~~eL~~kQ~tp~dlsClPt-L~vsDIp~~~~----~~~~~v~dingvkv~~~dl~t---- 579 (998)
T KOG2019|consen 509 KLEEKKAALTEEDLAEIAKAGEELREKQSTPEDLSCLPT-LNVSDIPKTIP----YTKLEVGDINGVKVQRCDLFT---- 579 (998)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCccccccccc-cccccCCCCCC----ccceeeeeccCceeEEeeccC----
Confidence 01111223444333332110 000000112455556663 44444332211 135567788999996655443
Q ss_pred ceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHH------h--hhhhhccccceEEEeeeC--------ceEEEEEecc
Q 002792 454 RANTYFRINLKGGYDNVKNCILTELFIHLLKDELN------E--IIYQASVAKLETSVSIFS--------DKLELKVYGF 517 (880)
Q Consensus 454 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~--~~~~~~~~g~~~~~~~~~--------~~~~~~~~g~ 517 (880)
.+.+|++..++.+..+-+...+..+||..+..... + .......+|++.+..+.. -++.++-+++
T Consensus 580 ngi~Y~r~~~~l~~~p~eL~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l 659 (998)
T KOG2019|consen 580 NGITYTRVVFDLNSLPEELLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSML 659 (998)
T ss_pred CceEEEEEeeccccCcHHhhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhh
Confidence 46799998888877677888999999998775432 1 122344688888876654 1344445555
Q ss_pred CCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhccccC-hhhHHHHHHHHhhcCCCCCHH--------HHHHHhc
Q 002792 518 NDKLPVLLSKILAIAKSFLPS-DDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFYDVD--------EKLSILH 587 (880)
Q Consensus 518 ~~~l~~~l~ll~~~l~~p~~~-~~~f~~~k~~~~~~~~~~~~~-p~~~a~~~~~~~l~~~~~~~~--------~~~~~l~ 587 (880)
..+.+++++++..++.++.|. ++.|........+++.+...+ ++..|..++.+.+....|-.+ ..+..|+
T Consensus 660 ~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~ 739 (998)
T KOG2019|consen 660 DRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLE 739 (998)
T ss_pred cCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHH
Confidence 678999999999999999995 899999999999999988877 777777777777765544221 1122222
Q ss_pred cCC-------HHHHHHHHHHHHhccceeEEeecCCCH-HHHHHHHHHHHhhhc-CCCCCccccccceeEEcCCCCeEEEE
Q 002792 588 GLS-------LADLMAFIPELRSQLYIEGLCHGNLSQ-EEAIHISNIFKSIFS-VQPLPIEMRHQECVICLPSGANLVRN 658 (880)
Q Consensus 588 ~it-------~~dl~~~~~~~~~~~~~~~~v~Gd~~~-~~~~~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (880)
... .+.|.+..+.+++.+++.+.|..+=.. ..++..+++|+..++ ..+.+.... ....++-+.... .
T Consensus 740 ~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st---~d~r~p~~~~~i-~ 815 (998)
T KOG2019|consen 740 EKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKST---WDARLPLRSEAI-R 815 (998)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccC---ccccCCCCceeE-E
Confidence 222 245666666777888999999988543 577888899998887 333221111 111122221111 1
Q ss_pred eecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhCh-hhHHHhhhhccccEEEEeeeeeeCCeeeEEEEEeCC
Q 002792 659 VSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEE-PFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSS 737 (880)
Q Consensus 659 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s-~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~ 737 (880)
+..+. ...+.+--. . .+ -+.++++.+.+.+|+..|+. .|+.++||| |.+|+-||.+....|..++. |.
T Consensus 816 ~~~P~-fqvnyvgka-~-~~---vpyt~~d~asl~vlS~~lt~k~Lh~evRek-GGAYGgg~s~~sh~GvfSf~----SY 884 (998)
T KOG2019|consen 816 VVIPT-FQVNYVGKA-G-LG---VPYTHPDGASLQVLSKLLTNKWLHDEVREK-GGAYGGGCSYSSHSGVFSFY----SY 884 (998)
T ss_pred Eeccc-cchhhhhhh-c-cc---ccCCCCCCcHHHHHHHHHHHHHHHHHHHHh-cCccCCccccccccceEEEE----ec
Confidence 11110 001111000 1 11 34556677889999998865 678999997 78899999888877654442 33
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCCCccHHHHHHHhCC
Q 002792 738 KYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSI 816 (880)
Q Consensus 738 ~~~~~~~~~~i~~~~~~~~~~~-~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~v 816 (880)
.+|+- .+.++-|-...+.+. ..+++++|++||-++++.... +..+..+. + ...+.| ..-+..+..++.|-++
T Consensus 885 -RDpn~-lktL~~f~~tgd~~~~~~~~~~dldeAkl~~f~~VDa-p~~P~~kG--~-~~fl~g-vtDemkQarREqll~v 957 (998)
T KOG2019|consen 885 -RDPNP-LKTLDIFDGTGDFLRGLDVDQQDLDEAKLGTFGDVDA-PQLPDAKG--L-LRFLLG-VTDEMKQARREQLLAV 957 (998)
T ss_pred -cCCch-hhHHHhhcchhhhhhcCCccccchhhhhhhhcccccC-CcCCcccc--h-HHHHhc-CCHHHHHHHHHHHHhh
Confidence 44543 345555544444444 359999999999999988654 33333332 1 112222 3566888899999999
Q ss_pred CHHHHHHHHHHhcccCCCCcceEEEEEecCCCC
Q 002792 817 KKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 849 (880)
Q Consensus 817 T~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~ 849 (880)
+..|+.++|.+|+.. ..+...+.|.|+...
T Consensus 958 Sl~d~~~vae~yl~~---~~~~~~vav~g~E~~ 987 (998)
T KOG2019|consen 958 SLKDFKAVAEAYLGV---GDKGVAVAVAGPEDI 987 (998)
T ss_pred hHHHHHHHHHHHhcc---CCcceEEEeeCccCc
Confidence 999999999999963 345677888887653
No 6
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=398.65 Aligned_cols=782 Identities=15% Similarity=0.130 Sum_probs=510.3
Q ss_pred CCccccccCCCCceEEEe-eCccchHHHHHHHHhhccccCCCchhHHHH--------------HHhHHHHHhhhcCChHH
Q 002792 10 GGSSNAYTETEHTCYHFE-IKREFLKGALMRFSQFFISPLMKVEAMERE--------------VLAVDSEFNQALQNDAC 74 (880)
Q Consensus 10 Gg~~na~T~~d~T~y~~~-~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e--------------~~~v~~E~~~~~~~~~~ 74 (880)
+-.+||+|..|.|+|.++ ...+++-++|.+++|.+.+|.++++.|.+| .+||.+||++...++..
T Consensus 89 ntF~NA~T~~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~ 168 (978)
T COG1026 89 NTFLNAFTFPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGES 168 (978)
T ss_pred HHHHhhccCCCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchh
Confidence 445899999999999996 456899999999999999999999999998 69999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhh-ccccc
Q 002792 75 RLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVEL-FANVR 153 (880)
Q Consensus 75 ~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~-f~~~~ 153 (880)
++++.+++.+||+..|+..+.|.+..|.. ++.+++++||+++|+|+|+.++++|+++++++...+++. +....
T Consensus 169 ~~~~~~~~slfp~~ty~~~SGG~P~~I~~------LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~ 242 (978)
T COG1026 169 VLSRAMQQSLFPGTTYGVNSGGDPKNIPD------LTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFG 242 (978)
T ss_pred HHHHHHHHhhCCCccccccCCCCcccccc------cCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999 999999999999999999999999999999999999885 55554
Q ss_pred CCCCCCCCCcccccccc--cceEEE--EE---EcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHhhC
Q 002792 154 KGPQIKPQFTVEGTIWK--ACKLFR--LE---AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGR 226 (880)
Q Consensus 154 ~~~~~~~~~~~~~~~~~--~~~~~~--~~---~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~ 226 (880)
.... ....+ ....++ .+.... +. ...++..+.+.|.++...+..+..++.+|+.+|-+...+-|.+.|.+.
T Consensus 243 k~~~-~~~i~-~~~~~~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~lies 320 (978)
T COG1026 243 KREL-DVPIP-DQKAFKKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIES 320 (978)
T ss_pred cccc-CCCCC-cccccCcccccceeeccCCCCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHc
Confidence 4331 11111 111122 111111 11 123456788999999998888999999999999985555599999988
Q ss_pred ccc-cccccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCC
Q 002792 227 GWA-TSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQ 305 (880)
Q Consensus 227 gl~-~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~ 305 (880)
|+. .+++..... ... ...|.+.+. .-..++++++.+.+++.|+.+...|++.+.++.+..++..+.+-. .+
T Consensus 321 glg~~~~~g~~~~-~~~----~~~f~v~~~--gv~~ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~-~s 392 (978)
T COG1026 321 GLGFADVSGSYDS-DLK----ETIFSVGLK--GVSEEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEV-KS 392 (978)
T ss_pred CCCcccccceecc-ccc----eeEEEEEec--CCCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhh-cC
Confidence 887 444332222 111 225555544 333478999999999999999999999999998877666554421 22
Q ss_pred ChhHH--HHHHHHhC-CCCCcccceecCccCcC----CCHH-HHHHHHhc-cCccc-eEEEEEecCCCCC-CCCccc-ce
Q 002792 306 PQDDY--AAELAGNL-LIYPAEHVIYGEYMYEV----WDEE-MIKHLLGF-FMPEN-MRIDVVSKSFAKS-QDFHYE-PW 373 (880)
Q Consensus 306 ~~~~~--~~~l~~~~-~~~~~~~~l~~~~~~~~----vt~~-~i~~~~~~-l~~~~-~~i~~~~p~~~~~-~~~~~~-~~ 373 (880)
.+.+. ...+...| .+.+|.+.|.....++. +... .+++++++ |..++ .+++++-|...-. +..+.+ +.
T Consensus 393 ~pfgl~l~~~~~~gw~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~ 472 (978)
T COG1026 393 YPFGLGLMFRSLYGWLNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEEREL 472 (978)
T ss_pred CCccHHHHHHhccccccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHH
Confidence 22222 22223333 45677666654333332 2222 28889985 55566 4666777764200 000000 00
Q ss_pred eccccccccCCHHH----------HHhhcCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCeEEecCCCceEE
Q 002792 374 FGSRYTEEDISPSL----------MELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFW 443 (880)
Q Consensus 374 ~~~~y~~~~i~~~~----------~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~ 443 (880)
... -...+..+. ++..|+.+. +. +....+|+ +.+.+.+...+ ..+......+..+|.
T Consensus 473 L~~--~~~~l~de~~~ki~~~~~~lke~Q~~~d--se----~~~~~lP~-l~~~dvp~~~~----k~~l~~~~~~~~~v~ 539 (978)
T COG1026 473 LQK--RSSELTDEDLEKIIKDSKKLKERQDQPD--SE----EDLATLPT-LKLGDVPDPIE----KTSLETEVSNEAKVL 539 (978)
T ss_pred HHH--HHhhcCHHHHHHHHHHHHHHHHhhcCCC--ch----hhhhhccc-cchhcCCCccc----ccceeeeccCCcceE
Confidence 000 001122211 112222110 00 11222332 22222222111 133445567788887
Q ss_pred EeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHh------hh--hhhccccceEEEeeeC--------
Q 002792 444 YKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE------II--YQASVAKLETSVSIFS-------- 507 (880)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~--~~~~~~g~~~~~~~~~-------- 507 (880)
+++-.+ .+.+++++..+....+.+..++..|++.+++...++ .. ...-.+|++++.++..
T Consensus 540 ~~~~~t----n~i~yl~~~~~~~~l~~~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~ 615 (978)
T COG1026 540 HHDLFT----NGITYLRLYFDLDMLPSELLPYLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEY 615 (978)
T ss_pred EeecCC----CCeEEEEEEeecCCCChhhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccc
Confidence 776544 567888887777677888899999999998865432 11 1233578877776653
Q ss_pred -ceEEEEEeccCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhccccC-hhhHHHHHHHHhhcCCC-----CCH
Q 002792 508 -DKLELKVYGFNDKLPVLLSKILAIAKSFLP-SDDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSF-----YDV 579 (880)
Q Consensus 508 -~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~-~~~~f~~~k~~~~~~~~~~~~~-p~~~a~~~~~~~l~~~~-----~~~ 579 (880)
..+.+++.++.++...+++++.+++.+..| |.+++..+.++.++.+.+...+ +...|.....+-++... ++.
T Consensus 616 ~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~G 695 (978)
T COG1026 616 RPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNG 695 (978)
T ss_pred cceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcC
Confidence 468889999999999999999999999999 7899999999999999888877 88777777666554321 111
Q ss_pred HHHHHHhccC--------C---HHHHHHHHHHHHhccceeEEeecCCCHHHHHHHH-HHHHhhhcC---CCCCccccccc
Q 002792 580 DEKLSILHGL--------S---LADLMAFIPELRSQLYIEGLCHGNLSQEEAIHIS-NIFKSIFSV---QPLPIEMRHQE 644 (880)
Q Consensus 580 ~~~~~~l~~i--------t---~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~-~~~~~~l~~---~~~~~~~~~~~ 644 (880)
.....-|..+ . .+.|++.+++++...++.+++.|+.+.. .+.+ +.+.+.+.. .... ...+..
T Consensus 696 l~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~~--~~~~e~~l~~~~~~~~~~~~~-~~~~~~ 772 (978)
T COG1026 696 LSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKI--LDLLENPLLKFLEHLLPGFEL-PTPPKN 772 (978)
T ss_pred hhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhhh--HHHHHHHhhhhhcccCccccc-CCCCCC
Confidence 1111222221 1 2467888888888889989999998753 2222 334333321 1000 011111
Q ss_pred eeEEcCC--CCeEEEEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhCh-hhHHHhhhhccccEEEEeee
Q 002792 645 CVICLPS--GANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEE-PFFNQLRTKEQLGYVVECSP 721 (880)
Q Consensus 645 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s-~l~~~lRek~gl~Y~v~~~~ 721 (880)
+...+.. ....+ ...|...++. . +..+. .++.+++.+++.+++.++++ .|+.+||++ |+||+.++.+
T Consensus 773 ~~~~~~~~~~~~~i----i~~p~a~~~l--~-fs~~~--~~y~hpd~~~l~vls~~L~~~~lw~~IR~~-GGAYGa~as~ 842 (978)
T COG1026 773 PHLDLISSLSEATI----IPSPVAYNAL--A-FSIGG--LPYTHPDYAALQVLSEYLGSGYLWNKIREK-GGAYGASASI 842 (978)
T ss_pred cchhhhccccceEE----eccHHHHHHH--h-hhccC--CCCCCccchHHHHHHHHhccchhHHHHHhh-cccccccccc
Confidence 1111111 11111 1111111111 1 11221 45677888999999999865 778999987 8889888888
Q ss_pred eeeCCeeeEEEEEeCCCCChHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 002792 722 RVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKR 800 (880)
Q Consensus 722 ~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~-~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~ 800 (880)
....|..++ +.. ++|+ +.+..+.+.+.+..+. ..++++|+++++-++++.... +.++..++..-......+.
T Consensus 843 ~~~~G~f~f--~sY---RDPn-~~kt~~v~~~~v~~l~s~~~~~~d~~~~ilg~i~~~d~-p~sp~~~~~~s~~~~~sg~ 915 (978)
T COG1026 843 DANRGVFSF--ASY---RDPN-ILKTYKVFRKSVKDLASGNFDERDLEEAILGIISTLDT-PESPASEGSKSFYRDLSGL 915 (978)
T ss_pred ccCCCeEEE--Eec---CCCc-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhccccc-ccCCcceehhhHHHHHhcC
Confidence 776555443 333 4443 3345555555555544 479999999999999988765 4455444433333333332
Q ss_pred CCCCccHHHHHHHhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCC
Q 002792 801 YMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNT 848 (880)
Q Consensus 801 ~~~~~~~~~~~~i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~ 848 (880)
..+.++.++++|.++|++||.++.++|+.+ -.+.-+++++|...
T Consensus 916 -~~~~~qa~re~~l~vt~~di~~~~~~yl~~---~~~e~~i~~~~~~e 959 (978)
T COG1026 916 -TDEERQAFRERLLDVTKEDIKEVMDKYLLN---FSSENSIAVFAGEE 959 (978)
T ss_pred -CHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---ccccceEEEEechh
Confidence 457888999999999999999999999974 24566777776633
No 7
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.3e-42 Score=387.94 Aligned_cols=608 Identities=19% Similarity=0.192 Sum_probs=394.6
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHH
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.++++++||++||+|+.|+|+|++++++++++.+|++|+|++.+|.|++++|++||++|.+|+++..++|..+..+.+.
T Consensus 63 i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~ 142 (696)
T TIGR02110 63 LMPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALL 142 (696)
T ss_pred HHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCCC
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ 161 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~~ 161 (880)
+.+|++|||+++.+|+.++|.... ..+.++|++||++||+|+||+|+|+||+++++++++++++|+.|+.+..+.+.
T Consensus 143 ~~l~~~HPy~~~~iGt~esL~~it---~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~ 219 (696)
T TIGR02110 143 DALQAGHPLRRFHAGSRDSLALPN---TAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQA 219 (696)
T ss_pred HHcCCCCCCCCCCCCCHHHHhCcc---cchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 999999999999999999998610 04599999999999999999999999999999999999999999866543222
Q ss_pred CcccccccccceEEEEEEcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHhhCccccccccccCCCCC
Q 002792 162 FTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGM 241 (880)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~~~~~~~~ 241 (880)
. +.+....+...... ....++.+.|..|+.... +..++.+++++|+++++++|+.+||++||+|+++++..+...
T Consensus 220 ~--~~p~~~~~~~~~~~--~~~~q~~l~~~~p~~~~~-d~~al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~ 294 (696)
T TIGR02110 220 P--PAPLLRFDRLTLAG--GSEPRLWLLFALAGLPAT-ARDNVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDA 294 (696)
T ss_pred C--CCCCCCCceeEEEe--cCcceEEEEEeecCCCCC-ChHHHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCC
Confidence 1 11222222222222 223467778877765442 445689999999998888999999999999999986543211
Q ss_pred CCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHhhcccccccCCCChhHHHHHHHHhCC
Q 002792 242 HRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQV--SPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL 319 (880)
Q Consensus 242 ~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~--g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (880)
..+.|.|++.+++.+.++.+++++.++++|+++++. +++.+|++++|+. +|.+... ++-+.+. ..-.
T Consensus 295 ----g~~lf~I~~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~---~~~~~~~-~~l~~~r---~~~~ 363 (696)
T TIGR02110 295 ----GQALLALEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQR---RFQTLAL-SPLAQLR---GRAL 363 (696)
T ss_pred ----CCcEEEEEEEEcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh---hhhhccc-ChHHHHh---hhcc
Confidence 234999999986644468999999999999999988 8999999988764 3432222 2322222 1111
Q ss_pred CCCcccceecCccCcCCCHHHHHHHHhccCccceEEEEEecCCCCCCCCcccceeccccccccCCHHHHHhhcCCCCCCC
Q 002792 320 IYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDV 399 (880)
Q Consensus 320 ~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~ 399 (880)
+.++.. . ..=...++...+..+. ++ ..
T Consensus 364 ~~~~~~--~-----~~~~~~~~~~~l~~~~-~~-~~-------------------------------------------- 390 (696)
T TIGR02110 364 GFALGC--A-----LPDALTDFLAALQDCP-RT-RL-------------------------------------------- 390 (696)
T ss_pred CCCCcc--c-----CcchHHHHHHHHhhcc-cc-cc--------------------------------------------
Confidence 122211 0 0002223333333221 11 00
Q ss_pred CCCCCCCCCCCCC---------------------CccccccCCCCCCcCCCCCeEEecCCCceEEEeccCcccccceEEE
Q 002792 400 SLQLPSQNEFIPT---------------------DFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTY 458 (880)
Q Consensus 400 ~~~~p~~~~~i~~---------------------~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~~~~~~~~~~p~~~i~ 458 (880)
.+.+|..|||+.. .|.... +.. . +.|..... .+..|++. ..+.++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~~-----~~~~~~~~---~~~~l~ 456 (696)
T TIGR02110 391 LTQQQPGAPFAHSGLHAPVARLARAVVQARSVSLTLAASR-CSA-P----KSPTRCAF-----LAALPSDK---TERALA 456 (696)
T ss_pred cccCCCCcchhhhhcccccccccccccccccccccccccc-ccc-c----cccccchh-----hhccCCCC---ccccee
Confidence 0111222222100 000000 000 0 00100000 01122221 246688
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHHHHHHHHhhhhhhccccceEEEeeeCceEEEEEeccCCCHHHHHHHHHHHHhcCCCC
Q 002792 459 FRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPS 538 (880)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~ 538 (880)
+++..++..... +...+...+....-++..+|.+.+++...+...+.+.|..+-+..++..+...+..|...
T Consensus 457 l~w~~~~~~~~~--------~~~~l~~~l~~l~~~~~~~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~~~ 528 (696)
T TIGR02110 457 LRWGFPSHPPEE--------LALALQRQLRPLLADARHAGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAAPM 528 (696)
T ss_pred eeccCCCCcchH--------HHHHHHHHHHHHHHHHHhcCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCCcc
Confidence 888876532111 233344455555555667899999999999999999999999999999999999887431
Q ss_pred --HHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHHHHhccceeEEeecCCC
Q 002792 539 --DDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 616 (880)
Q Consensus 539 --~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~ 616 (880)
...= ....|...+.+.+...+-... .....+.+ + .|....+.. + +
T Consensus 529 ~~~~~~-------------~~~~~~~i~ir~ll~~lp~~~------~~~~~~~~--~--~~~~~~~~~-----~-----~ 575 (696)
T TIGR02110 529 LAQPAA-------------NRASAPSIPIRQLLAALPERL------LKSLPAQQ--D--DWLAARWGA-----A-----T 575 (696)
T ss_pred cccccc-------------cCCCCccchHHHHHHhchHhh------ccCccccc--c--chhhhhccc-----c-----h
Confidence 1100 001122333333322221100 00000000 0 011111111 0 1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccccceeEEcCCCCeEEEEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHH
Q 002792 617 QEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFD 696 (880)
Q Consensus 617 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~ 696 (880)
... +......++..+.. ..+.+... ..+... .....++..++..+ +++. +..+....++..+|+
T Consensus 576 ~~~----~~~~l~~~~~~~~~--~~~~~~~~--~~~~~~---~~~~~~~~e~alll-f~p~----~~~~~~~~aa~rlla 639 (696)
T TIGR02110 576 QLA----QRVALQLSPGTADL--ARPTPLPA--RLGRGW---VPLACDGGEQALLL-FCPL----PTADVASEAAWRLLA 639 (696)
T ss_pred hHH----HHHHHHhCCCCCcc--CCCCCCCc--ccccce---EeccCCCCCcEEEE-EecC----CCCCHHHHHHHHHHH
Confidence 111 22222223322100 10000000 012111 12333344455544 5557 777889999999999
Q ss_pred HHhChhhHHHhhhhccccEEEEeeeeeeCCeeeEEEEEeCCCCChHHHHHHHHHHH
Q 002792 697 EILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFI 752 (880)
Q Consensus 697 ~~l~s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~ 752 (880)
.++..++|++||.+.|+||.|+|++....|..|+.|.+||+.+++.++..+|+.|+
T Consensus 640 ~l~~~~f~qrlRve~qlGY~v~~~~~~~~~~~gllf~~QSP~~~~~~l~~h~~~fl 695 (696)
T TIGR02110 640 QLLEPPFFQRLRVELQLGYVVFCRYRRVADRDGLLFALQSPDASARELLQHIKRFL 695 (696)
T ss_pred HHhchhHHHHHHHhhccceEEEEeeEEcCCcceeEEEEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999886
No 8
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=345.82 Aligned_cols=344 Identities=18% Similarity=0.135 Sum_probs=273.2
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHH
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.+.++..||..||+|++|+|+|++++.+++++.+|++++|++.+|.|++++|++||++|.+|+++..++|.++++..+.
T Consensus 79 i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~ 158 (438)
T COG0612 79 LAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLL 158 (438)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Confidence 45678899999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCCC
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ 161 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~~ 161 (880)
..+|++|||+++++|++++|.+ ++.++|++||++||+|+||+|+|+||++++++.++++++|++|+....+.+.
T Consensus 159 ~~~~~~~p~~~~~~G~~e~I~~------it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~ 232 (438)
T COG0612 159 EALYGNHPLGRPILGTEESIEA------ITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKI 232 (438)
T ss_pred HHhhccCCCCCCCCCCHHHHHh------CCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCC
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999972222111
Q ss_pred CcccccccccceEEEEE----EcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHh-hCcccccccccc
Q 002792 162 FTVEGTIWKACKLFRLE----AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGV 236 (880)
Q Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr-~~gl~~~~~~~~ 236 (880)
. ..++....+.+... +......+.++++.+......++.++.+++.+||++..++|+..+| ++|++|++++..
T Consensus 233 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~ 310 (438)
T COG0612 233 P--PEPPLGPERVVRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFS 310 (438)
T ss_pred C--CccccCCCceEEecCCCCchhhhhhhhccccCcCcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeecccc
Confidence 1 12333333444432 2222345566666665544335788899999999877778999999 889999998755
Q ss_pred CCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHhhcccccccCCCChhHHHHH
Q 002792 237 GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVS---PQKWIFKELQDIGNMEFRFAEEQPQDDYAAE 313 (880)
Q Consensus 237 ~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g---~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~ 313 (880)
... . +.|.+.+.+.+.. .+.+.+.+.+.+.++.++..+ +++++++.++..+...+....+ ++...+..
T Consensus 311 ~~~----~-~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~-s~~~~~~~ 381 (438)
T COG0612 311 DFL----S-DSGLFSIYAGTAP---ENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLD-SPSSIAEL 381 (438)
T ss_pred ccc----c-ccCCceEEEEecC---CChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccC-CHHHHHHH
Confidence 442 1 3457888887775 455666666666666666554 8999999998888777765443 45566666
Q ss_pred HHHhCCC-CCcccceecCccCcCCCHHHHHHHHhc-cCccceEEEEEecCC
Q 002792 314 LAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKSF 362 (880)
Q Consensus 314 l~~~~~~-~~~~~~l~~~~~~~~vt~~~i~~~~~~-l~~~~~~i~~~~p~~ 362 (880)
+...... .++..+....+.++++|+++|++++++ +.+++..+++++|..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 382 LGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred HHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 6555432 444444455567999999999999996 667778888888863
No 9
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-35 Score=287.59 Aligned_cols=340 Identities=13% Similarity=0.081 Sum_probs=279.3
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHH
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
|...++..|+++||||++|+|+|+..+.++++++++++|+|++++..+.++.|++||++|..|++....+...++++.++
T Consensus 95 lElEieniGahLNAytSReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLH 174 (467)
T KOG0960|consen 95 LELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLH 174 (467)
T ss_pred HHHHHHHHHHHhcccccccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCCC
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ 161 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~~ 161 (880)
..+|.++|.++...|..+.|++ ++++||++|.++||.+++|+|+.+|.++++++.+++++|||.++....+...
T Consensus 175 atafQgtPL~~tilGp~enI~s------i~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~ 248 (467)
T KOG0960|consen 175 ATAFQGTPLGRTILGPSENIKS------ISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKV 248 (467)
T ss_pred HHHhcCCcccccccChhhhhhh------hhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCC
Confidence 9999999999999999999999 9999999999999999999999999999999999999999998753322111
Q ss_pred CcccccccccceEEEEE-EcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCC---------CCCcHHHHHhhCccccc
Q 002792 162 FTVEGTIWKACKLFRLE-AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHE---------GRGSLHSFLKGRGWATS 231 (880)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~---------~~~~L~~~Lr~~gl~~~ 231 (880)
...+.+.|. |..++.. +.-+..++.|+..+.++.++ |+.++.+.+.++|.. .+++|-+.+.+..++.+
T Consensus 249 ~~~~~~~Ft-gsEvR~rdd~lP~a~~AiAVEG~~w~~p-D~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~s 326 (467)
T KOG0960|consen 249 PLVPPARFT-GSEVRVRDDDLPLAHIAIAVEGVSWAHP-DYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHS 326 (467)
T ss_pred CCCCCcccc-CceeeecCCCCchhheeeeEecCCcCCc-cHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHH
Confidence 100112243 4555554 34567789999999988884 999999999999862 12336666665567766
Q ss_pred cccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCCChhHHH
Q 002792 232 ISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYA 311 (880)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~ 311 (880)
+.++... |. +.|+|++++.+.+ ...++.++..+.+++.+|.. .+++.|++++|++++.++....+. +...+
T Consensus 327 fqsFnt~----Yk-DTGLwG~y~V~~~--~~~iddl~~~vl~eW~rL~~-~vteaEV~RAKn~Lkt~Lll~ldg-ttpi~ 397 (467)
T KOG0960|consen 327 FQSFNTS----YK-DTGLWGIYFVTDN--LTMIDDLIHSVLKEWMRLAT-SVTEAEVERAKNQLKTNLLLSLDG-TTPIA 397 (467)
T ss_pred Hhhhhcc----cc-cccceeEEEEecC--hhhHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcC-CCchH
Confidence 5544333 44 7889999999843 27899999999999999976 799999999999999887654443 33467
Q ss_pred HHHHHhCCC----CCcccceecCccCcCCCHHHHHHHHhc-cCccceEEEEEecC
Q 002792 312 AELAGNLLI----YPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKS 361 (880)
Q Consensus 312 ~~l~~~~~~----~~~~~~l~~~~~~~~vt~~~i~~~~~~-l~~~~~~i~~~~p~ 361 (880)
..++..+.. .++.++.. .+++||.++|+.++.+ +.+....+..+||.
T Consensus 398 ediGrqlL~~Grri~l~El~~---rId~vt~~~Vr~va~k~iyd~~iAia~vG~i 449 (467)
T KOG0960|consen 398 EDIGRQLLTYGRRIPLAELEA---RIDAVTAKDVREVASKYIYDKDIAIAAVGPI 449 (467)
T ss_pred HHHHHHHhhcCCcCChHHHHH---HHhhccHHHHHHHHHHHhhcCCcceeeeccc
Confidence 888887743 35555554 4999999999999986 77888888888885
No 10
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-30 Score=269.08 Aligned_cols=793 Identities=13% Similarity=0.099 Sum_probs=458.5
Q ss_pred cCCccccccCCCCceEEEee-CccchHHHHHHHHhhccccCCCchhHHHH----------HHhHHHHHhhhcCChHHHHH
Q 002792 9 HGGSSNAYTETEHTCYHFEI-KREFLKGALMRFSQFFISPLMKVEAMERE----------VLAVDSEFNQALQNDACRLQ 77 (880)
Q Consensus 9 ~Gg~~na~T~~d~T~y~~~~-~~~~l~~~l~~l~~~~~~p~~~~~~~~~e----------~~~v~~E~~~~~~~~~~~~~ 77 (880)
.=|+.||+|+.|+|.|.++. -.+.|-.+|.++.|.+.+|.++.+++..| .++|.+||+.....-.....
T Consensus 86 ~l~dtNAwTDtD~T~YtLStag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~ 165 (1022)
T KOG0961|consen 86 CLADTNAWTDTDHTAYTLSTAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMD 165 (1022)
T ss_pred hhcccccccccCcceEEeecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhh
Confidence 34689999999999999975 56889999999999999999999999988 58999999988888788888
Q ss_pred HHHHhhCCC-CCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCC
Q 002792 78 QLQCHTSQL-GHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGP 156 (880)
Q Consensus 78 ~~~~~~~~~-~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~ 156 (880)
+..++..|| +++|...+.|.+..|+. ++.+.+|+||+++|+|+||+++|+|.++.+++....+..-..|+...
T Consensus 166 ~~~~~~~yP~~sgY~~eTGG~~knLR~------lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~ 239 (1022)
T KOG0961|consen 166 RKTKEVIYPPFSGYAVETGGRLKNLRE------LTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHM 239 (1022)
T ss_pred hhhheeecCCCCCceeccCCChhhHHH------hhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhcc
Confidence 888888886 67899999999999998 99999999999999999999999999999999887766555444332
Q ss_pred CCCC-CCcc----cccccccc----eEEEEE-EcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHh--
Q 002792 157 QIKP-QFTV----EGTIWKAC----KLFRLE-AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-- 224 (880)
Q Consensus 157 ~~~~-~~~~----~~~~~~~~----~~~~~~-~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr-- 224 (880)
...| .++. ...+.... ..+... ....+..+.++|.+++.++.....++.+|...|.+..-.-+-+.+.
T Consensus 240 s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVei 319 (1022)
T KOG0961|consen 240 STVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEI 319 (1022)
T ss_pred ccCCCCCCCCcccccCcccCCccceeeeecCCcccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEe
Confidence 2111 1210 00011111 111111 1234567999999999888777788999999999744444666665
Q ss_pred hCccccccccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhccccc-ccC
Q 002792 225 GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR-FAE 303 (880)
Q Consensus 225 ~~gl~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~-~~~ 303 (880)
+--++.+++....... .. ...+.+..-| .++++.....+++.+. .+..|+-+.+..+-...+.++. ...
T Consensus 320 eDP~assv~f~~~~~v--rc----~i~L~f~gVP--~EKi~~~~~k~l~~l~--et~~iDm~Rm~~~i~~t~~~yL~nlE 389 (1022)
T KOG0961|consen 320 EDPLASSVSFHIAEGV--RC----DIRLNFAGVP--VEKIDECAPKFLDKLV--ETANIDMERMGYLIDQTILNYLVNLE 389 (1022)
T ss_pred cCccccceeeeeeccc--ce----eEEEeecCCc--HHHhhhhhHHHHHHHH--HhcccCHHHHHHHHHHHHHHHHHhhh
Confidence 6677777777666531 11 3344444334 3677666665544443 3455766444444222222222 112
Q ss_pred CCChhHHHHHHHHhCCCCCc--cc------ceecCccCcCCCHHHHHHHHhccC-ccceEEEEEecCCCCCCCCccccee
Q 002792 304 EQPQDDYAAELAGNLLIYPA--EH------VIYGEYMYEVWDEEMIKHLLGFFM-PENMRIDVVSKSFAKSQDFHYEPWF 374 (880)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~~~--~~------~l~~~~~~~~vt~~~i~~~~~~l~-~~~~~i~~~~p~~~~~~~~~~~~~~ 374 (880)
...+..+.+.+.....+..- +. -+.+.+.+.++...|..+++++++ .++..+++..|.+......+++.--
T Consensus 390 ~n~~s~fms~ii~d~~ygnedg~~l~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVia~Ps~em~e~i~kE~~~ 469 (1022)
T KOG0961|consen 390 TNAPSDFMSHIIGDQLYGNEDGELLKKRLKELDFLKKLKSWPAKDWVQLLNKYFVENPSATVIAVPSEEMVEKIAKEEEK 469 (1022)
T ss_pred cCChHHHHHHHhhhhhccCcchhHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhccCCCeEEEecCcHHHHHHHHHHHHH
Confidence 33445566655443322111 11 122334567788999999999744 5666777777875200000000000
Q ss_pred ccccccccCCH----HHHHhhcCCCCC----CC-----CCCC--CCCCCCCCCCccccccCCCCCCcCCCCCeEEecCCC
Q 002792 375 GSRYTEEDISP----SLMELWRNPPEI----DV-----SLQL--PSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPL 439 (880)
Q Consensus 375 ~~~y~~~~i~~----~~~~~~~~~~~~----~~-----~~~~--p~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 439 (880)
...---+.+.+ ...+.+.+.... .| .|.+ |+.-.|.. .+.+.......+-.....|..-..-..
T Consensus 470 ~i~~r~~~lg~~gle~l~k~L~~ak~~N~~~~p~~ll~~f~I~~peS~ef~~-~~~v~t~~s~~pfdne~~~~~~T~~~~ 548 (1022)
T KOG0961|consen 470 RIAARCEKLGKKGLEELGKSLEAAKLENTANHPSALLLDFLIVKPESLEFFD-RFPVQTLTSNSPFDNELTPQQSTFLAQ 548 (1022)
T ss_pred HHHHHHHHhChhhHHHHHHHHHHhhhcccCCCCHHHHhheeccCchheeeee-ccceeeccCCCCCCccccceeeccccc
Confidence 00000001111 111222211100 00 0110 11111111 011111100000000001111122223
Q ss_pred ceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHH---H------------HhhhhhhccccceEEEe
Q 002792 440 IRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDE---L------------NEIIYQASVAKLETSVS 504 (880)
Q Consensus 440 ~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~------------~~~~~~~~~~g~~~~~~ 504 (880)
...++.-++ .|.-+|.+.+.......+.....+..+|..++... + ++........-++.++.
T Consensus 549 fp~fi~l~h---~ps~Fvel~fl~dss~i~~sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~ 625 (1022)
T KOG0961|consen 549 FPFFINLHH---CPSKFVELFFLLDSSNISISLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQ 625 (1022)
T ss_pred CCceeeccc---CchHHHhHhhhhccccCchhhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhc
Confidence 333333322 24555666665554444455566666666655421 1 11110000011222232
Q ss_pred ee-----CceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcCCC---
Q 002792 505 IF-----SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF--- 576 (880)
Q Consensus 505 ~~-----~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~--- 576 (880)
.+ .+-+.+.+.+..++.+....++.-.+....||+++.....++++.++...+.+.-..+.....+.+|+..
T Consensus 626 ~g~~G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk 705 (1022)
T KOG0961|consen 626 VGVSGLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLK 705 (1022)
T ss_pred ccccccchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchh
Confidence 22 2457888999999999999999999999999999999999999999999888865566666666676431
Q ss_pred C--CHHHHHHHhccCC----------HHHHHHHHHHHHhccceeEEeecCCCH-HHHHHHHHHHHhhhcCC-CCCc----
Q 002792 577 Y--DVDEKLSILHGLS----------LADLMAFIPELRSQLYIEGLCHGNLSQ-EEAIHISNIFKSIFSVQ-PLPI---- 638 (880)
Q Consensus 577 ~--~~~~~~~~l~~it----------~~dl~~~~~~~~~~~~~~~~v~Gd~~~-~~~~~l~~~~~~~l~~~-~~~~---- 638 (880)
+ ...-...-++.|. ++.+++..+-.+..+.+.+.|+|||+. ++...-+..+.+...-+ |...
T Consensus 706 ~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~t 785 (1022)
T KOG0961|consen 706 ISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSAT 785 (1022)
T ss_pred hcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccCCchhhcccc
Confidence 1 1111111122221 223333333223456889999999876 33333333333222111 1000
Q ss_pred cccccceeEEcCCCCeEEEEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh---ChhhHHHhhhhccccE
Q 002792 639 EMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL---EEPFFNQLRTKEQLGY 715 (880)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l---~s~l~~~lRek~gl~Y 715 (880)
.+........+..+...++ ...|++..+-++...+.. ..+..+..+...+++++| .+.++..||-. ||+|
T Consensus 786 f~~~~~~s~e~gsssk~~~---I~~p~sESs~l~~sip~~---~~w~dpel~~~~l~~~YL~~~eGPfW~~IRG~-GLAY 858 (1022)
T KOG0961|consen 786 FEAGENVSLELGSSSKELL---IGVPGSESSFLYQSIPLD---ANWNDPELIPAMLFGQYLSQCEGPFWRAIRGD-GLAY 858 (1022)
T ss_pred cccCcccceeccCCcceeE---ecCCCccccceeeecccc---cccCCcchhHHHHHHHHHHhcccchhhhhccc-chhc
Confidence 0011111222232222221 122344444333333232 445667777888888876 57999999965 8888
Q ss_pred EEEeeeeeeCCeeeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHH
Q 002792 716 VVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKD-PSLTYESNRFWN 794 (880)
Q Consensus 716 ~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~-~s~~~~~~~~~~ 794 (880)
++.....+..+..++.++.. .++.+..+.-+++++.+..-...+++.+|+-||.+.+..+.... .+.....+.+-.
T Consensus 859 Ganm~~~~d~~~~~~~iyr~---ad~~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~Eng~~~~a~~~~~l 935 (1022)
T KOG0961|consen 859 GANMFVKPDRKQITLSIYRC---ADPAKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKRENGTVSGAAKISIL 935 (1022)
T ss_pred cceeEEeccCCEEEEEeecC---CcHHHHHHHHHHHHHHHhcCceeecHHHhccchHHHHHHHHHHhccceechHHHHHH
Confidence 88777777766666655533 45777777777777666532235899999999999888766532 222222222222
Q ss_pred HHhcCCCCCCccHHHHHHHhCCCHHHHHHHHHHhcccC
Q 002792 795 QITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQW 832 (880)
Q Consensus 795 ~i~~~~~~~~~~~~~~~~i~~vT~edi~~~~~~~l~~~ 832 (880)
....+ .+.+....+.++|.+||.+|+.+..+.|+.+-
T Consensus 936 ~~~~q-~~~~fn~~~leri~nvT~~~~~~~~~~y~~~~ 972 (1022)
T KOG0961|consen 936 NNFRQ-TPHPFNIDLLERIWNVTSEEMVKIGGPYLARL 972 (1022)
T ss_pred HHHHh-cCCcccHHHHHHHHHhhHHHHHHhcccceehh
Confidence 22222 24455667889999999999999999988653
No 11
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1e-30 Score=289.98 Aligned_cols=405 Identities=14% Similarity=0.079 Sum_probs=306.5
Q ss_pred CeEEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHH-----hhhhhhccccceEEEee
Q 002792 431 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSI 505 (880)
Q Consensus 431 p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~g~~~~~~~ 505 (880)
.....+.||++++..+.++ .|.+.+.+.+..+....+....+++.++..++..+.+ +....-...|.......
T Consensus 17 ~~~~~L~nGl~~~~~~~~~--~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 17 LQVFTLPNGLRVITYPNPT--APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ceEEEcCCCCEEEEEeCCC--CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 3567889999999999875 5778888888866666677778899999998876632 23333344567777888
Q ss_pred eCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcC-CCCC--HHHH
Q 002792 506 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD--VDEK 582 (880)
Q Consensus 506 ~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~--~~~~ 582 (880)
+.+.....++.++++++.+++++.+++.+|.|++++|+++|..++++++...++|.+.+.+.+...+++ +++. ..++
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 888888888878899999999999999999999999999999999999999999999999999998875 4443 4678
Q ss_pred HHHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccceeEEcCCCCeEEEEeecC
Q 002792 583 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVK 662 (880)
Q Consensus 583 ~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (880)
.+.|+++|.+||++||+++|+|.|++++|+||++.+++..+++++++.|+... +....+..+ ...+. ..+ .....
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~-~~~~~~~~~--~~~~~-~~~-~~~~~ 249 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAA-PPPKIPPEP--PLGPE-RVV-RVNDP 249 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccC-CCCCCCCcc--ccCCC-ceE-EecCC
Confidence 99999999999999999999999999999999999999999999999988621 111111101 01111 111 11111
Q ss_pred -CCCCCCeEEEEEEeeccccCcc----cHHHHHHHHHHHHHhChhhHHHhhhhccccEEEEeeeeeeCCeeeEEEEEeCC
Q 002792 663 -NKCETNSVIELYFQIEQEKGME----LTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSS 737 (880)
Q Consensus 663 -~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~ 737 (880)
.+.-..+.+...+.. + ... .....+...++++.++||||.++|+++||+|++++........+.+.+++.+.
T Consensus 250 ~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~ 326 (438)
T COG0612 250 EQPDLEQAWLALGYPG-P--DYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTA 326 (438)
T ss_pred CCchhhhhhhhccccC-c--CcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccccccCCceEEEEec
Confidence 111112222222211 1 111 13334444555556779999999999999999998666655555555555555
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCCCccHHHHHHHhCC
Q 002792 738 KYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSI 816 (880)
Q Consensus 738 ~~~~~~~~~~i~~~~~~~~~~~-~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~v 816 (880)
..+++.+.+.|.+.+..+.+.. ..+|+++++.+|..+.+.+....+++...++.++.....++ .....+++.+.|++|
T Consensus 327 ~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~v 405 (438)
T COG0612 327 PENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGG-SLITLEELLERIEAV 405 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcC-CccCHHHHHHHHHhc
Confidence 4778888888888887777643 24899999999999999999999999998888877666543 677888999999999
Q ss_pred CHHHHHHHHHHhcccCCCCcceEEEEEecCCCCcc
Q 002792 817 KKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 851 (880)
Q Consensus 817 T~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~ 851 (880)
|++||++++++++.+. ..+++++|+....+
T Consensus 406 t~~dv~~~a~~~~~~~-----~~~~~~~~p~~~~~ 435 (438)
T COG0612 406 TLEDVNAVAKKLLAPE-----NLTIVVLGPEKALK 435 (438)
T ss_pred CHHHHHHHHHHhcCCC-----CcEEEEEccccccc
Confidence 9999999999999753 58999999977654
No 12
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-28 Score=238.86 Aligned_cols=334 Identities=12% Similarity=0.097 Sum_probs=270.4
Q ss_pred hhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHHh
Q 002792 3 MSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCH 82 (880)
Q Consensus 3 ~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~ 82 (880)
-.-|+++||...+.|++|.+.|..++.+++++.++++|+|.+.+|.|++++++.++..|.-|+.....+|+..+.+.++.
T Consensus 87 ~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~ 166 (472)
T KOG2067|consen 87 LAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHS 166 (472)
T ss_pred HHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred hCCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCCCC
Q 002792 83 TSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQF 162 (880)
Q Consensus 83 ~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~~~ 162 (880)
++|.+.+.+.+..+..+.|.. ++.+.|.+|-+.+|.|++|++.-+| ++++++.+.++++|+.+|+...|+...
T Consensus 167 Aay~~ntlg~pl~cp~~~i~~------I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~i~~ 239 (472)
T KOG2067|consen 167 AAYSGNTLGLPLLCPEENIDK------INREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDE 239 (472)
T ss_pred HHhccCcccccccCChhhhhh------hhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCccCCCCccc
Confidence 999999998888888888988 9999999999999999999999999 999999999999999999865443222
Q ss_pred cccccccccceEEEE------EE-cCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCC------CCc-HHHHH----h
Q 002792 163 TVEGTIWKACKLFRL------EA-VKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEG------RGS-LHSFL----K 224 (880)
Q Consensus 163 ~~~~~~~~~~~~~~~------~~-~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~------~~~-L~~~L----r 224 (880)
+...+.+| .... .+ .....++.++|..+++.+. |..++.+|..++||++ +|. .|++| -
T Consensus 240 --~~aQYtGG-~~~~~~d~~~~~~g~EltHv~lg~Eg~~~~de-D~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vL 315 (472)
T KOG2067|consen 240 --SKAQYTGG-ELKIDTDAPQVTGGPELTHVVLGFEGCSWNDE-DFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVL 315 (472)
T ss_pred --chhhcccc-ccccCCCCccccCccceeeeeEeeccCCCCCh-hHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHH
Confidence 11112222 1111 11 1245689999999998885 8999999999999852 333 44444 3
Q ss_pred -hCccccccccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccC
Q 002792 225 -GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAE 303 (880)
Q Consensus 225 -~~gl~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~ 303 (880)
+..|+|+..++... |. |+|+|.|...+.| +.+.+.+..+.+++..+.. +++++|++++|++++..+....
T Consensus 316 Nry~wv~sctAfnhs----y~-DtGlfgi~~s~~P---~~a~~aveli~~e~~~~~~-~v~~~el~RAK~qlkS~LlMNL 386 (472)
T KOG2067|consen 316 NRYHWVYSCTAFNHS----YS-DTGLFGIYASAPP---QAANDAVELIAKEMINMAG-GVTQEELERAKTQLKSMLLMNL 386 (472)
T ss_pred hhhHHHHHhhhhhcc----cc-CCceeEEeccCCH---HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcc
Confidence 77899998887654 34 7889999999999 7888999999999988864 6999999999998888776544
Q ss_pred CCChhHHHHHHHHhCC----CCCcccceecCccCcCCCHHHHHHHHhccCccceEEEEEec
Q 002792 304 EQPQDDYAAELAGNLL----IYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSK 360 (880)
Q Consensus 304 ~~~~~~~~~~l~~~~~----~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p 360 (880)
++.+ -..+.++.+.. ..+|++++.. ++++|++||.++++++...+..+...|.
T Consensus 387 ESR~-V~~EDvGRQVL~~g~rk~p~e~~~~---Ie~lt~~DI~rva~kvlt~~p~va~~Gd 443 (472)
T KOG2067|consen 387 ESRP-VAFEDVGRQVLTTGERKPPDEFIKK---IEQLTPSDISRVASKVLTGKPSVAAFGD 443 (472)
T ss_pred cccc-hhHHHHhHHHHhccCcCCHHHHHHH---HHhcCHHHHHHHHHHHhcCCceeccCCc
Confidence 4433 34455655542 2355666654 8999999999999997767766655443
No 13
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.92 E-value=3.4e-23 Score=232.39 Aligned_cols=326 Identities=10% Similarity=-0.017 Sum_probs=233.7
Q ss_pred EecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHh------hhhhhccccceEEEeeeC
Q 002792 434 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE------IIYQASVAKLETSVSIFS 507 (880)
Q Consensus 434 ~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~ 507 (880)
++++||++|++.+++. .|.+.+.+.+..+....+....+++.++..++..+... +....+..|.+++.+.+.
T Consensus 3 ~tL~NGLrVllv~~p~--~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~ 80 (696)
T TIGR02110 3 ITLPNGLRVHLYHQPD--AKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLE 80 (696)
T ss_pred EEcCCCCEEEEEECCC--CCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcC
Confidence 5678999999999875 57888888888777666677789999999998765432 222233467889999999
Q ss_pred ceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcC-CCCC--HHHHHH
Q 002792 508 DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD--VDEKLS 584 (880)
Q Consensus 508 ~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~--~~~~~~ 584 (880)
+.+.+++.+++++++.+++++.+++.+|.|++++|+++|+.++++++...++|...+.+.+...+++ ++|. ..++.+
T Consensus 81 d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~e 160 (696)
T TIGR02110 81 RTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRD 160 (696)
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999888998888888888874 4554 356677
Q ss_pred HhccCC---HHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccceeEEcCCCCeEEEEeec
Q 002792 585 ILHGLS---LADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV 661 (880)
Q Consensus 585 ~l~~it---~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (880)
+|+.++ .+|+++||+++|.++|++++|+||++.++++++++++++.++....+....+ . . ........+. .
T Consensus 161 sL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~--~-p-~~~~~~~~~~--~ 234 (696)
T TIGR02110 161 SLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPP--A-P-LLRFDRLTLA--G 234 (696)
T ss_pred HHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCC--C-C-CCCCceeEEE--e
Confidence 787665 9999999999999999999999999999999999999988865432211110 0 0 0111111211 1
Q ss_pred CCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhChhhHHHhhhhccccEEEEeeeeeeCCe--eeEEEEEeCC--
Q 002792 662 KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRV--FGFCFCIQSS-- 737 (880)
Q Consensus 662 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~v~~~~~~~~~~--~~~~~~i~s~-- 737 (880)
. ...+..+.+.++. .+ ..+.....++..+|++.++|+||.+||+ +|++|++++++. ..+. ..+.+++...
T Consensus 235 ~--~~~q~~l~~~~p~-~~-~~d~~al~lL~~iLg~g~sSrL~~~LRe-~GLaysV~s~~~-~~~~g~~lf~I~~~lt~~ 308 (696)
T TIGR02110 235 G--SEPRLWLLFALAG-LP-ATARDNVTLLCEFLQDEAPGGLLAQLRE-RGLAESVAATWL-YQDAGQALLALEFSARCI 308 (696)
T ss_pred c--CcceEEEEEeecC-CC-CCChHHHHHHHHHhCCCcchHHHHHHHH-CCCEEEEEEecc-ccCCCCcEEEEEEEEcCC
Confidence 1 1223333322322 10 1222234455666777778999999997 899999998653 3322 2455555532
Q ss_pred -CCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002792 738 -KYNPIYLQERIDNFISGLDELLEGLDDESFENYRSG 773 (880)
Q Consensus 738 -~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~ 773 (880)
..+.+++.+.|.+.++.+.+..-+++.+|+.++|+.
T Consensus 309 ~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~ 345 (696)
T TIGR02110 309 SAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQR 345 (696)
T ss_pred CccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 134555555555555555431127899999999986
No 14
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-22 Score=194.83 Aligned_cols=402 Identities=10% Similarity=0.025 Sum_probs=299.0
Q ss_pred EEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHhh-----hhhhccccceEEEeeeC
Q 002792 433 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI-----IYQASVAKLETSVSIFS 507 (880)
Q Consensus 433 ~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~ 507 (880)
...+.||++|--..+ ..+..+|.+-+..+....+.++-+.+.++-.+.-.+.... ..+-+-.|...+.+.+.
T Consensus 36 vttL~NGlrVaTE~~---~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytSR 112 (467)
T KOG0960|consen 36 VTTLPNGLRVATEHN---SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTSR 112 (467)
T ss_pred EEEcCCCcEEEeccC---CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccccc
Confidence 457789999977665 3467889999988888888999999988888765544221 11123357888888889
Q ss_pred ceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcC-CC--CCHHHHHH
Q 002792 508 DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SF--YDVDEKLS 584 (880)
Q Consensus 508 ~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~--~~~~~~~~ 584 (880)
+.....+++++++++++++++.|++++..+.+..+++++..++.+.+....+-..+.++++....+. .+ .+..+..+
T Consensus 113 eqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~e 192 (467)
T KOG0960|consen 113 EQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSE 192 (467)
T ss_pred cceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhh
Confidence 9999999999999999999999999999999999999999999999998777667888888877763 33 35567889
Q ss_pred HhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccceeEEcCCCCeEEEEeecCCC
Q 002792 585 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNK 664 (880)
Q Consensus 585 ~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (880)
.|++|+.+||++|.+.+|.+.++.+...|.++-+++..+++++++.+++...+... +..+.... .|..+.++ ..
T Consensus 193 nI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~-~~~~~~~F-tgsEvR~r-dd--- 266 (467)
T KOG0960|consen 193 NIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKV-PLVPPARF-TGSEVRVR-DD--- 266 (467)
T ss_pred hhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCC-CCCCCccc-cCceeeec-CC---
Confidence 99999999999999999999999999999999999999999999987653222111 11011001 12222211 11
Q ss_pred CCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh-------------ChhhHHHhhhhccccEEEEeeeeeeCCeeeEE
Q 002792 665 CETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL-------------EEPFFNQLRTKEQLGYVVECSPRVTYRVFGFC 731 (880)
Q Consensus 665 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l-------------~s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~ 731 (880)
.-+.+.+-+.+ -| ..+..++..++.+.+.++ +|+|-+.+-+. +|+-+.-++.-...+++.+.
T Consensus 267 ~lP~a~~AiAV-EG---~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG 341 (467)
T KOG0960|consen 267 DLPLAHIAIAV-EG---VSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQD-QLCHSFQSFNTSYKDTGLWG 341 (467)
T ss_pred CCchhheeeeE-ec---CCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHH-HHHHHHhhhhccccccccee
Confidence 22333333333 23 455555555555555554 56788777766 56655555555555555555
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCCCccHHHHH
Q 002792 732 FCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAE 811 (880)
Q Consensus 732 ~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~ 811 (880)
+|+-+. ++..+++.+..+++++..+...+|+.|.++||+.+..++....++....++.+..+++..+ .--...+..+
T Consensus 342 ~y~V~~--~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~G-rri~l~El~~ 418 (467)
T KOG0960|consen 342 IYFVTD--NLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYG-RRIPLAELEA 418 (467)
T ss_pred EEEEec--ChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcC-CcCChHHHHH
Confidence 665542 6778888999999998887779999999999999999988876666666777777776555 2334567789
Q ss_pred HHhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCCcchhhhc
Q 002792 812 DLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEKH 856 (880)
Q Consensus 812 ~i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~~~~~~ 856 (880)
+|++||.++|+++|.+|+ +.+.+.+..+|+-...+.+..+
T Consensus 419 rId~vt~~~Vr~va~k~i-----yd~~iAia~vG~ie~lpdy~~i 458 (467)
T KOG0960|consen 419 RIDAVTAKDVREVASKYI-----YDKDIAIAAVGPIEGLPDYNRI 458 (467)
T ss_pred HHhhccHHHHHHHHHHHh-----hcCCcceeeecccccCchHHHH
Confidence 999999999999999999 3468999999998888766553
No 15
>PRK15101 protease3; Provisional
Probab=99.91 E-value=1.7e-22 Score=247.11 Aligned_cols=400 Identities=10% Similarity=0.004 Sum_probs=278.1
Q ss_pred CCeEEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHhh------hhhhccccceEEE
Q 002792 430 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI------IYQASVAKLETSV 503 (880)
Q Consensus 430 ~p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~g~~~~~ 503 (880)
....+.++||++|++.+++. .|.+.+.+.+..|....+....+++.++..++..+...+ .......|.+++.
T Consensus 43 ~~~~~~L~NGL~v~l~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA 120 (961)
T PRK15101 43 QYQAIRLDNGMTVLLVSDPQ--AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNA 120 (961)
T ss_pred ceEEEEeCCCCEEEEEeCCC--CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccc
Confidence 34567899999999999875 578888888877766556667899999999887655322 1112335677888
Q ss_pred eeeCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcC-CCCC--HH
Q 002792 504 SIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD--VD 580 (880)
Q Consensus 504 ~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~--~~ 580 (880)
+.+.+.....+.+.+++++.+|+++++++.+|.|+++.++++|..+.++++...++|...+.+.+...+++ ++++ ..
T Consensus 121 ~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~ 200 (961)
T PRK15101 121 STASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSG 200 (961)
T ss_pred eECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCC
Confidence 88889999999999999999999999999999999999999999999999988888888888888777764 4444 35
Q ss_pred HHHHHhccC----CHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccceeEEc-CCCCeE
Q 002792 581 EKLSILHGL----SLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICL-PSGANL 655 (880)
Q Consensus 581 ~~~~~l~~i----t~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 655 (880)
|+.++|+.+ +.++|++||+++|+++|+.++|+||++.+++.++++++++.|+....+....+. +.... ..+. .
T Consensus 201 G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 278 (961)
T PRK15101 201 GNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITV-PVVTDAQKGI-I 278 (961)
T ss_pred CCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCC-CCCCHHHcCe-E
Confidence 678888887 699999999999999999999999999999999999999888764321111101 10000 0111 1
Q ss_pred EEEeecCCCCCCCeEEEEEEeeccccCcc-c---HHHHHHHHHHHHHhChhhHHHhhhhccccEEEEeeeeee--CCeee
Q 002792 656 VRNVSVKNKCETNSVIELYFQIEQEKGME-L---TRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVT--YRVFG 729 (880)
Q Consensus 656 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~v~~~~~~~--~~~~~ 729 (880)
+ ... +...+..+.+.++.. +.. . .....+..+|++...+.|+..|+ ++|++|+++++.... .+.+.
T Consensus 279 ~-~~~---~~~~~~~l~l~~~~p---~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~-~~gla~~v~s~~~~~~~~~~g~ 350 (961)
T PRK15101 279 I-HYV---PAQPRKVLRVEFRID---NNSAKFRSKTDEYISYLIGNRSPGTLSDWLQ-KQGLAEGISAGADPMVDRNSGV 350 (961)
T ss_pred E-EEE---ECCCCcEEEEEEecC---CcHHHHhhCHHHHHHHHhcCCCCCcHHHHHH-HcCccceeeeccccccCCCceE
Confidence 1 111 122333444445442 111 1 12344556666666667888885 889999999886643 33344
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCCCCCccH
Q 002792 730 FCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEK-DPSLTYESNRFWNQITDKRYMFDQSQ 807 (880)
Q Consensus 730 ~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~-~~it~~el~~~k~~l~~~~~~~-~~s~~~~~~~~~~~i~~~~~~~~~~~ 807 (880)
+.+++.......+++.+.+..+.+.+..+. ++++++||+++|+.+..++... .....+....+-..+ . .+++....
T Consensus 351 f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l 428 (961)
T PRK15101 351 FAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTM-L-RVPVEHTL 428 (961)
T ss_pred EEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHh-h-hCCHHHhe
Confidence 555555331111356667777777777664 7899999999999988877442 222222222222222 1 23433333
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCC
Q 002792 808 KEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 849 (880)
Q Consensus 808 ~~~~~i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~ 849 (880)
.....++.+++++|+++++. |.|+ .+.++++++..+
T Consensus 429 ~~~~~~~~~~~~~i~~~~~~-l~~~-----n~~i~~~~~~~~ 464 (961)
T PRK15101 429 DAPYIADRYDPKAIKARLAE-MTPQ-----NARIWYISPQEP 464 (961)
T ss_pred eCchhhhcCCHHHHHHHHhh-cCHh-----HEEEEEEeCCCC
Confidence 44567889999999999886 7664 677777777543
No 16
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.7e-19 Score=176.42 Aligned_cols=400 Identities=10% Similarity=0.032 Sum_probs=295.5
Q ss_pred EEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHH-----HhhhhhhccccceEEEeeeC
Q 002792 433 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL-----NEIIYQASVAKLETSVSIFS 507 (880)
Q Consensus 433 ~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~ 507 (880)
...+.||++|.-.+..- +-..+.+.+.++..+..+.-.+.+.++-.+--.+. .+.....+..|-.++.+.+.
T Consensus 27 vttL~NGlkvase~~pg---~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSR 103 (472)
T KOG2067|consen 27 VTTLPNGLKVASENTPG---QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSR 103 (472)
T ss_pred eeecCCccEEeccCCCC---CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccH
Confidence 34678999997776432 45778888888877766655555555555433222 23333344567778888889
Q ss_pred ceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcCC-CCC--HHHHHH
Q 002792 508 DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS-FYD--VDEKLS 584 (880)
Q Consensus 508 ~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~~~ 584 (880)
+...-.+++.++.++.++++++|.+.+|+|++++++.++..+.-++..-..+|..+..+.+....|.. ..+ .....+
T Consensus 104 etm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~ 183 (472)
T KOG2067|consen 104 ETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEE 183 (472)
T ss_pred hhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChh
Confidence 99999999999999999999999999999999999999999998888887789888888887777643 222 222357
Q ss_pred HhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccce----eEEcCCCCeEEEEee
Q 002792 585 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQEC----VICLPSGANLVRNVS 660 (880)
Q Consensus 585 ~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 660 (880)
.+..|+.+.|.+|.+.+|.|.++.+.-+| ++.+++..+++++++.++....|....+..+ ...++.....+
T Consensus 184 ~i~~I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~---- 258 (472)
T KOG2067|consen 184 NIDKINREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQV---- 258 (472)
T ss_pred hhhhhhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccc----
Confidence 79999999999999999999999998887 7889999999999998887433321111000 00111110000
Q ss_pred cCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh---------------ChhhHHHhhhhccccEEEEeeeeeeC
Q 002792 661 VKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL---------------EEPFFNQLRTKEQLGYVVECSPRVTY 725 (880)
Q Consensus 661 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l---------------~s~l~~~lRek~gl~Y~v~~~~~~~~ 725 (880)
.. ...-.++ ++.+-. +.++.++.+++.+|+-+| -|||+-++=.+.+..|+.-|+...+.
T Consensus 259 ~~-g~EltHv-~lg~Eg----~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~ 332 (472)
T KOG2067|consen 259 TG-GPELTHV-VLGFEG----CSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYS 332 (472)
T ss_pred cC-ccceeee-eEeecc----CCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhcccc
Confidence 00 0112233 333323 566667888887777665 36899888888889999988888887
Q ss_pred CeeeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCCCc
Q 002792 726 RVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQ 805 (880)
Q Consensus 726 ~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~ 805 (880)
+.+-+.++.. ..|+.+.+++.-+.+++.....+++++|+++||.++.+.+..+.+|-.-.......+++..+ .-..
T Consensus 333 DtGlfgi~~s---~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g-~rk~ 408 (472)
T KOG2067|consen 333 DTGLFGIYAS---APPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTG-ERKP 408 (472)
T ss_pred CCceeEEecc---CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhcc-CcCC
Confidence 7766666554 56999999999888888877678999999999999999998877766555566666776554 3446
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCCcchhhhc
Q 002792 806 SQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEKH 856 (880)
Q Consensus 806 ~~~~~~~i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~~~~~~ 856 (880)
.+++++.|+++|++||.+++.+.|. .+.++.-.|+....+.+.-+
T Consensus 409 p~e~~~~Ie~lt~~DI~rva~kvlt------~~p~va~~Gd~~~lpt~~~i 453 (472)
T KOG2067|consen 409 PDEFIKKIEQLTPSDISRVASKVLT------GKPSVAAFGDGTGLPTYDHI 453 (472)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhc------CCceeccCCcccCCcchhhh
Confidence 7899999999999999999999985 47888889998888766655
No 17
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.82 E-value=2.1e-19 Score=175.43 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=139.7
Q ss_pred cHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCC---CCCCCCcccccccccceEEEEEEcC-cceE
Q 002792 110 NLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGP---QIKPQFTVEGTIWKACKLFRLEAVK-DVHI 185 (880)
Q Consensus 110 ~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 185 (880)
++.++|++||++||+|+||+++|+||+++++++++|+++|+.|+... ...+......+....+..+...... +...
T Consensus 2 it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T PF05193_consen 2 ITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQSI 81 (184)
T ss_dssp --HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSEE
T ss_pred CCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999664 2212111011111122333333333 5778
Q ss_pred EEEEEecCCchhhhhcChHHHHHHHhcCCCCCcHHHHHh-hCccccccccccCCCCCCCcccceEEEEEEEcCHhhHHhH
Q 002792 186 LDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKI 264 (880)
Q Consensus 186 l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr-~~gl~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~ 264 (880)
+.+.|+.++.....+..++.++..+|++...++|+..|| ++|++|+++++.... . +.|.|.|.+.+++ +++
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~-~----~~~~~~i~~~~~~---~~~ 153 (184)
T PF05193_consen 82 VSIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSY-R----DSGLFSISFQVTP---ENL 153 (184)
T ss_dssp EEEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEE-S----SEEEEEEEEEEEG---GGH
T ss_pred cccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeecc-c----cceEEEEEEEcCc---ccH
Confidence 999999988833357889999999999988888999999 999999999885432 1 4569999999988 689
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHhh
Q 002792 265 FDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 295 (880)
Q Consensus 265 ~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~ 295 (880)
+++++.+.++++.+++.|++++|++++|+.+
T Consensus 154 ~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 154 DEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9999999999999999999999999998753
No 18
>PTZ00432 falcilysin; Provisional
Probab=99.81 E-value=1.6e-17 Score=200.02 Aligned_cols=402 Identities=11% Similarity=0.047 Sum_probs=249.6
Q ss_pred ecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHhh-----hhhhcccc--ceEEEeeeC
Q 002792 435 IDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI-----IYQASVAK--LETSVSIFS 507 (880)
Q Consensus 435 ~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~g--~~~~~~~~~ 507 (880)
-..+|++|++.+.+....|...+.+.|..+. ....+++.++..++..+...+ .......| ..++...+.
T Consensus 96 H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~ 171 (1119)
T PTZ00432 96 HKKTGLQVISLKTNDSSGKEMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFK 171 (1119)
T ss_pred EcCCCCEEEEEecCCCccceeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCC
Confidence 4469999998886542234556667776664 233567777777776554322 11111233 345667777
Q ss_pred ceEEEEEeccCC-CHHHHHHHHHHHHhcCCCCHHHH--HH---------H--------------------HHHHHHHHhc
Q 002792 508 DKLELKVYGFND-KLPVLLSKILAIAKSFLPSDDRF--KV---------I--------------------KEDVVRTLKN 555 (880)
Q Consensus 508 ~~~~~~~~g~~~-~l~~~l~ll~~~l~~p~~~~~~f--~~---------~--------------------k~~~~~~~~~ 555 (880)
+.....+...++ ++..+++++.+.+.+|.|+++++ .+ . +..+.++++.
T Consensus 172 D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~ 251 (1119)
T PTZ00432 172 DRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKK 251 (1119)
T ss_pred CceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHH
Confidence 899999998886 69999999999999999987753 22 1 6668899999
Q ss_pred cccChhhHHHHHHHHhhcCCCCC--HHHHHHHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcC
Q 002792 556 TNMKPLSHSSYLRLQVLCQSFYD--VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 633 (880)
Q Consensus 556 ~~~~p~~~a~~~~~~~l~~~~~~--~~~~~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~ 633 (880)
..++|..++.+.+.+.+++++|. ..|..++|..+|.+++++||+++|+|.|+.++|+||++.+++.++++++++.++.
T Consensus 252 ~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~ 331 (1119)
T PTZ00432 252 RFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPK 331 (1119)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhccc
Confidence 88889999999887777665554 4578899999999999999999999999999999999999999999998877654
Q ss_pred CCCCc-cc---cccceeE--EcCCCCeEEEEeecCC-CCCCCeEEEEEEeecccc--------CcccHHHHHHHHHHHHH
Q 002792 634 QPLPI-EM---RHQECVI--CLPSGANLVRNVSVKN-KCETNSVIELYFQIEQEK--------GMELTRLKALIDLFDEI 698 (880)
Q Consensus 634 ~~~~~-~~---~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~ll~~~ 698 (880)
..... .. .+..+.. ....+...+ ...... +......++..|..++.. ...+..+..++.+|+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~l 410 (1119)
T PTZ00432 332 TGQLSHTAYREDADENLLYEEYKDKPKHV-KKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYL 410 (1119)
T ss_pred ccccccccccccccccccccccccCCeEE-EeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHHHH
Confidence 31100 00 0000000 000111111 111111 122344444436453100 01334567777777766
Q ss_pred h----ChhhHHHhhhhccccEEE-EeeeeeeCCeeeEEEEEeCCC-CC-------hHHHHHHHHHHHHHHHHHHhCCCHH
Q 002792 699 L----EEPFFNQLRTKEQLGYVV-ECSPRVTYRVFGFCFCIQSSK-YN-------PIYLQERIDNFISGLDELLEGLDDE 765 (880)
Q Consensus 699 l----~s~l~~~lRek~gl~Y~v-~~~~~~~~~~~~~~~~i~s~~-~~-------~~~~~~~i~~~~~~~~~~~~~it~~ 765 (880)
| +|+|++.||+ +|+||++ ++++......+.+.+++.+.. .. .+++.+.|.+.++.+.+ +|++++
T Consensus 411 Lggg~sS~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~--eGi~~e 487 (1119)
T PTZ00432 411 LLGTPESVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVT--EGFNKS 487 (1119)
T ss_pred HcCCCccHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHH--hCCCHH
Confidence 5 7899999996 7999995 445544444555556665321 11 22444444444444433 789999
Q ss_pred HHHHHHHHHHHHHcCCCCC--h--HHHHHHHHHHHhcCCCCCCc--cHHHHHHHhC---CCHHHHHHHHHHhcccCCCCc
Q 002792 766 SFENYRSGLMAKLLEKDPS--L--TYESNRFWNQITDKRYMFDQ--SQKEAEDLKS---IKKNDVISWYKTYLQQWSPKC 836 (880)
Q Consensus 766 el~~~k~~l~~~~~~~~~s--~--~~~~~~~~~~i~~~~~~~~~--~~~~~~~i~~---vT~edi~~~~~~~l~~~~~~~ 836 (880)
+++++++++.-++.+...+ + ...+......+..+.-+++. ....++.|+. -++.-+.+++++||-.+ .
T Consensus 488 ele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll~N---~ 564 (1119)
T PTZ00432 488 AVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLEKLIEKHLLNN---N 564 (1119)
T ss_pred HHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHHHHHHHHccCC---C
Confidence 9999999998887754221 1 11222222233333223332 1222333321 23356999999999633 2
Q ss_pred ceEEEEEecCC
Q 002792 837 RRLAVRVWGCN 847 (880)
Q Consensus 837 ~~~~~~v~g~~ 847 (880)
-...+++.|+.
T Consensus 565 h~~~v~~~p~~ 575 (1119)
T PTZ00432 565 HRVTVHLEAVE 575 (1119)
T ss_pred eeeEEEEecCC
Confidence 34666666776
No 19
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.72 E-value=2.6e-15 Score=149.08 Aligned_cols=327 Identities=13% Similarity=0.083 Sum_probs=220.6
Q ss_pred hhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHH-HhHHHHHhhhcCChHHHHHHHHHhh
Q 002792 5 YLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREV-LAVDSEFNQALQNDACRLQQLQCHT 83 (880)
Q Consensus 5 ~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~-~~v~~E~~~~~~~~~~~~~~~~~~~ 83 (880)
-++..||.++.++++|+..|+++++.++++-.|.+|++.+.+|.|.|++++.+. ..|..+. ...+|..++++.+++.
T Consensus 87 ~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l--~~~t~~~~a~e~lH~a 164 (429)
T KOG2583|consen 87 ESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADL--AYQTPYTIAIEQLHAA 164 (429)
T ss_pred hhHhhCceeeeeeecceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHh--hhcChHHHHHHHHHHH
Confidence 367789999999999999999999999999999999999999999999999988 6666654 4567999999999999
Q ss_pred CCCCCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCCCCCCCc
Q 002792 84 SQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFT 163 (880)
Q Consensus 84 ~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~~~~~~~ 163 (880)
+|.+ ..+.+..-..-.+.+ .+.++|+.|-+++|...||+|+-+| +|++.+..+.+++ ..++.+....+..
T Consensus 165 AfRn-gLgnslY~p~~~vg~------vss~eL~~Fa~k~fv~gn~~lvg~n-vd~~~L~~~~~~~-~~~~~~~~~k~a~- 234 (429)
T KOG2583|consen 165 AFRN-GLGNSLYSPGYQVGS------VSSSELKDFAAKHFVKGNAVLVGVN-VDHDDLKQFADEY-APIRDGLPLKPAP- 234 (429)
T ss_pred HHhc-ccCCcccCCcccccC------ccHHHHHHHHHHHhhccceEEEecC-CChHHHHHHHHHh-ccccCCCCCCCCC-
Confidence 9965 433322211112333 8889999999999999999999887 8999999999997 3343332221110
Q ss_pred ccccccccceEEEEEEcCcceEEEEEEecCCc--hhhhhcChHHHHHHHhcCCCC----CcHHHHHhhCccccccccccC
Q 002792 164 VEGTIWKACKLFRLEAVKDVHILDLTWTLPCL--HQEYLKKSEDYLAHLLGHEGR----GSLHSFLKGRGWATSISAGVG 237 (880)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~--~~~~~~~~~~~l~~lL~~~~~----~~L~~~Lr~~gl~~~~~~~~~ 237 (880)
..+..|. .+...... ...+.+...+. .......+..++.+.|+.... .++...+-....-+.+++...
T Consensus 235 ---a~~~gGe-~Rk~~~g~--~~~v~vagegAAa~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~ 308 (429)
T KOG2583|consen 235 ---AKYSGGE-ARKDARGN--RVHVAVAGEGAAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAF 308 (429)
T ss_pred ---ccccCCc-cccccCCc--eeEEEEecCcccccchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccCceeeee
Confidence 1122232 22221122 23333333322 222355667888889997543 456666653222233333322
Q ss_pred CCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccccccCCCChhHHHHHHHHh
Q 002792 238 DEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN 317 (880)
Q Consensus 238 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (880)
. ..|. |.|+|++++..+. .++.+++......++.....+++-.....+.+.++..... .. .+.........+
T Consensus 309 ~--a~ys-DsGL~gv~~~~~~---~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~s-s~-~a~~~~~~~~a~ 380 (429)
T KOG2583|consen 309 N--APYS-DSGLFGVYVSAQG---SQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLS-SV-EALELATGSQAN 380 (429)
T ss_pred c--cccc-CCceEEEEEEecC---ccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhc-ch-HHHHHhhHHHhc
Confidence 2 1244 7889999998776 6788888888888888888888876666655555544322 11 111111111111
Q ss_pred CCCCCcccceecCccCcCCCHHHHHHHHhccCccceEEEEEecC
Q 002792 318 LLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKS 361 (880)
Q Consensus 318 ~~~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p~ 361 (880)
+ ..+++.++.. |++|+..||+++++++...++.+..+|.-
T Consensus 381 ~-~~~~d~~i~~---id~Vt~sdV~~a~kk~~s~kls~aA~Gnl 420 (429)
T KOG2583|consen 381 L-VSEPDAFIQQ---IDKVTASDVQKAAKKFLSGKLSLAAYGNL 420 (429)
T ss_pred C-CCChHHHHHH---hccccHHHHHHHHHHhccCcceeeeeccc
Confidence 1 1256666665 99999999999999988788888777753
No 20
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.67 E-value=2.5e-15 Score=146.51 Aligned_cols=180 Identities=21% Similarity=0.299 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCC--CccccccceeEEcCCCCeEEEEeecCCCC
Q 002792 588 GLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPL--PIEMRHQECVICLPSGANLVRNVSVKNKC 665 (880)
Q Consensus 588 ~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (880)
++|.++|++||+++|++.|++++|+||++.+++.++++++++.++.... +.................++ . ... .
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~--~ 76 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIV-I-PSK--D 76 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEE-E-EES--S
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccc-c-ccc--c
Confidence 4799999999999999999999999999999999999999998875421 00011000100011111112 1 111 2
Q ss_pred CCCeEEEEEEeeccc-cCcccHHHHHHHHHHHHHhChhhHHHhhhhccccEEEEeeeeeeCCeeeEEEEEeCCCCChHHH
Q 002792 666 ETNSVIELYFQIEQE-KGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYL 744 (880)
Q Consensus 666 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~ 744 (880)
..+..+.++++..+. .........++..+|+..++++|+..||+++|++|+++++.....+.+.+.+++++. ++.+
T Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~---~~~~ 153 (184)
T PF05193_consen 77 ESQSIVSIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVT---PENL 153 (184)
T ss_dssp SSSEEEEEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEE---GGGH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcC---cccH
Confidence 245666666655211 012233344444555555567799999999999999999977766666666666543 5566
Q ss_pred HHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Q 002792 745 QERIDNFISGLDELL-EGLDDESFENYRSGL 774 (880)
Q Consensus 745 ~~~i~~~~~~~~~~~-~~it~~el~~~k~~l 774 (880)
.++++.+.+.+..+. .+++++||+++|+.|
T Consensus 154 ~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 154 DEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 777777777777765 569999999999875
No 21
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.44 E-value=4.1e-11 Score=134.73 Aligned_cols=387 Identities=15% Similarity=0.070 Sum_probs=237.3
Q ss_pred CCceEEEeccCcccccceEEEEEEEcCCCcCCH-----HH--------HHHHHHHHHHHHHHHHhhhhhhccccceEEEe
Q 002792 438 PLIRFWYKLDNTFKLPRANTYFRINLKGGYDNV-----KN--------CILTELFIHLLKDELNEIIYQASVAKLETSVS 504 (880)
Q Consensus 438 ~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~-----~~--------~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 504 (880)
.|.++.+..+++ |....+|.|.+..-.++. +. .+.-..|-.+++.+++-+... +.+-++.++
T Consensus 29 TGa~l~hi~~~d---~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA--~T~~D~T~Y 103 (978)
T COG1026 29 TGAELAHIKNED---PNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNA--FTFPDKTVY 103 (978)
T ss_pred CCceEEEecCCC---cCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhh--ccCCCccee
Confidence 799998777654 567788888876532221 11 112234555555555543321 222333333
Q ss_pred eeCceEEEEEec-cCCCHHHHHHHHHHHHhcCCCCHHHHHHHH--------------HHHHHHHhccccChhhHHHHHHH
Q 002792 505 IFSDKLELKVYG-FNDKLPVLLSKILAIAKSFLPSDDRFKVIK--------------EDVVRTLKNTNMKPLSHSSYLRL 569 (880)
Q Consensus 505 ~~~~~~~~~~~g-~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k--------------~~~~~~~~~~~~~p~~~a~~~~~ 569 (880)
. ++. -.+++..++...+|.+.+|...++.|.++- ..+-++++....+|..+..+.+.
T Consensus 104 P--------~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~ 175 (978)
T COG1026 104 P--------ASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQ 175 (978)
T ss_pred e--------ccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHH
Confidence 2 232 346899999999999999998888887652 23446778888889999999999
Q ss_pred HhhcCC-CC--CHHHHHHHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHH-HhhhcCCCCCccccccce
Q 002792 570 QVLCQS-FY--DVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIF-KSIFSVQPLPIEMRHQEC 645 (880)
Q Consensus 570 ~~l~~~-~~--~~~~~~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~ 645 (880)
+.+++. .| ..-|.+..|-++|.+++++||+++|+|+|+.+++.||++.++....++.. +...+... .....+...
T Consensus 176 ~slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~-~~~~i~~~~ 254 (978)
T COG1026 176 QSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRE-LDVPIPDQK 254 (978)
T ss_pred HhhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccc-cCCCCCccc
Confidence 999864 22 33456788999999999999999999999999999999999998888664 43333222 111111111
Q ss_pred eEEcCCCCeEEEEeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh----ChhhHHHhhhhcccc-EEEEee
Q 002792 646 VICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL----EEPFFNQLRTKEQLG-YVVECS 720 (880)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l----~s~l~~~lRek~gl~-Y~v~~~ 720 (880)
.+.-+.+....+.+........+..+.+.|..+ ...+.++..++.+|..+| .+.|.+.|-|. |+| +.+...
T Consensus 255 ~~~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~---~~~d~~~~lal~vL~~iLl~~~asPl~~~lies-glg~~~~~g~ 330 (978)
T COG1026 255 AFKKPRRKVLEYPISFDEEDEDQGLLSLSWLGG---SASDAEDSLALEVLEEILLDSAASPLTQALIES-GLGFADVSGS 330 (978)
T ss_pred ccCcccccceeeccCCCCCCCceeEEEEEEecC---CcccHHHHHHHHHHHHHHccCcccHHHHHHHHc-CCCcccccce
Confidence 111122222222222133344566666778664 667788899999999987 46788888875 788 333322
Q ss_pred eeeeCCeeeEEEEEeCC-CCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCChHH--HHHHHHHHHh
Q 002792 721 PRVTYRVFGFCFCIQSS-KYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTY--ESNRFWNQIT 797 (880)
Q Consensus 721 ~~~~~~~~~~~~~i~s~-~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~~s~~~--~~~~~~~~i~ 797 (880)
+....-...+.+.+++. ....+++.+.+-+.++++.+ ++++.+.++.++.++.=++......+.. .+.+....+.
T Consensus 331 ~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~--~gi~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~~gw~ 408 (978)
T COG1026 331 YDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVK--NGIDKKLIEAILHQLEFSLKEVKSYPFGLGLMFRSLYGWL 408 (978)
T ss_pred eccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhhhhhcCCCccHHHHHHhccccc
Confidence 44333333444455542 23344555555555555543 7899999999998887776653332222 1223333444
Q ss_pred cCCCCCCccH--HHHHHHhC-CCHHH-HHHHHHHhcccCCCCcceEEEEEecCC
Q 002792 798 DKRYMFDQSQ--KEAEDLKS-IKKND-VISWYKTYLQQWSPKCRRLAVRVWGCN 847 (880)
Q Consensus 798 ~~~~~~~~~~--~~~~~i~~-vT~ed-i~~~~~~~l~~~~~~~~~~~~~v~g~~ 847 (880)
.|+-+++..+ ..++.|.. +.... +.+++++||--+ .....+++.|+.
T Consensus 409 ~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N---~h~~~v~~~Ps~ 459 (978)
T COG1026 409 NGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDN---PHYVTVIVLPSP 459 (978)
T ss_pred cCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcC---CccEEEEEecCh
Confidence 4544444432 44455543 44444 999999999632 124555555443
No 22
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2e-09 Score=120.87 Aligned_cols=403 Identities=11% Similarity=0.008 Sum_probs=243.3
Q ss_pred eEEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHhh------hhhhccccceEEEee
Q 002792 432 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI------IYQASVAKLETSVSI 505 (880)
Q Consensus 432 ~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~g~~~~~~~ 505 (880)
..+.++||+++.+..|+. .++....+.+..|....+.+..+++.+.-.|+--+.+++ ......-|.+...+.
T Consensus 25 ~~I~LpNGl~~LlisDP~--a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T 102 (937)
T COG1025 25 RAIKLPNGLRALLVSDPQ--ADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNAST 102 (937)
T ss_pred eEEECCCCceEEEecCCC--CCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCcccccc
Confidence 467899999999999875 567777777777664444456888888887776433221 111223455566666
Q ss_pred eCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcC-CCCCH--HHH
Q 002792 506 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYDV--DEK 582 (880)
Q Consensus 506 ~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~~--~~~ 582 (880)
..+...+.+....+.++.+++.+++++.+|.|+++..++++..+-+++.....+-.+...+.......+ |+++. .|.
T Consensus 103 ~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN 182 (937)
T COG1025 103 AGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGN 182 (937)
T ss_pred CCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCC
Confidence 777888888888999999999999999999999999999999999999988777555544444444443 44332 234
Q ss_pred HHHhcc----CCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccceeEEcCCCCeEEEE
Q 002792 583 LSILHG----LSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRN 658 (880)
Q Consensus 583 ~~~l~~----it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (880)
+++|.. ...+++.+||+++|++++|.++|.|+-+.+++.++..++++.++......+..+.+.......++.+.
T Consensus 183 ~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~-- 260 (937)
T COG1025 183 LETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIH-- 260 (937)
T ss_pred hhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCceEE--
Confidence 455544 55789999999999999999999999999999999999999888654322222211111111222222
Q ss_pred eecCCCCCCCeEEEEEEeeccccCcc-cHHHHHHHHHHHHHhChhhHHHhhhhccccEEEEeeeeeeCCeee-EEEEEeC
Q 002792 659 VSVKNKCETNSVIELYFQIEQEKGME-LTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFG-FCFCIQS 736 (880)
Q Consensus 659 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~v~~~~~~~~~~~~-~~~~i~s 736 (880)
..|..+.-.+.++|++...-... +-...+...+++.==.+-|-.-|- ++|++-++.++.....+..+ +.+.+.-
T Consensus 261 ---i~p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk-~~Glit~l~a~~~~~~~n~~~f~is~~L 336 (937)
T COG1025 261 ---IVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLK-KQGLITELSAGLDPISGNYGVFAISYEL 336 (937)
T ss_pred ---eccCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHH-hccchhhhccccccccCCcceEEEEeeh
Confidence 11233444555566552100111 122344444554332334555665 56888888887777654333 4443322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCCCCCccHHHHHHHh
Q 002792 737 SKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDP-SLTYESNRFWNQITDKRYMFDQSQKEAEDLK 814 (880)
Q Consensus 737 ~~~~~~~~~~~i~~~~~~~~~~~-~~it~~el~~~k~~l~~~~~~~~~-s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~ 814 (880)
+..--.+..+.|......++-+. +++....|++..+-.--.+..... .+.+... |.......++.+......-.+.
T Consensus 337 T~~Gl~~~~~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~--~l~~~m~~~p~~~~~~~~~~~~ 414 (937)
T COG1025 337 TDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVS--WLADNMEREPVEHTLYASLVLP 414 (937)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHH--HHHHhcccCChhhhhchhhccc
Confidence 11222333344444444444332 567666666655433333332222 1222222 2222222234443333344456
Q ss_pred CCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCCc
Q 002792 815 SIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 850 (880)
Q Consensus 815 ~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~ 850 (880)
.=.+++++.+..-.. |+ .+.+..+++....
T Consensus 415 ~yd~~~~~~~l~~~~-pe-----n~R~~lis~~~~~ 444 (937)
T COG1025 415 RYDPKAIQERLALMT-PE-----NARLWLISKLEEH 444 (937)
T ss_pred ccCHHHHHHHHHhhC-cc-----ceEEEEecCCCCc
Confidence 667899999998644 64 6777777776655
No 23
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.30 E-value=9.7e-09 Score=103.03 Aligned_cols=380 Identities=11% Similarity=0.056 Sum_probs=239.3
Q ss_pred ecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHh-----hhhhhccccceEEEeeeCce
Q 002792 435 IDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-----IIYQASVAKLETSVSIFSDK 509 (880)
Q Consensus 435 ~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~ 509 (880)
.+.||+.|--...++ |...+.+.|+.+..+.+..+.++..++.........+ .....+..|..++...+.+.
T Consensus 27 kl~ngL~Vas~e~~~---~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~ 103 (429)
T KOG2583|consen 27 KLVNGLTVASREAPT---AISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATREL 103 (429)
T ss_pred ccccceEEEeccCCC---cceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecce
Confidence 557898887776553 7889999999998887777667666655444332221 23344567888999999999
Q ss_pred EEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhccccChhhHHHHHHHHhhcCCCCCHHHH--HHHh
Q 002792 510 LELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIK-EDVVRTLKNTNMKPLSHSSYLRLQVLCQSFYDVDEK--LSIL 586 (880)
Q Consensus 510 ~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k-~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~--~~~l 586 (880)
+.+++.++.++++-.+.++.+.+..|.|.+=+++..+ ..+...+ ...+|...+++.+.+..+++..+..-. -..+
T Consensus 104 ~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l--~~~t~~~~a~e~lH~aAfRngLgnslY~p~~~v 181 (429)
T KOG2583|consen 104 IGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADL--AYQTPYTIAIEQLHAAAFRNGLGNSLYSPGYQV 181 (429)
T ss_pred EEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHh--hhcChHHHHHHHHHHHHHhcccCCcccCCcccc
Confidence 9999999999999999999999999999988777766 3333333 234599999999988887654332211 1248
Q ss_pred ccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccceeEEcCCCCeEEEEeecCCCCC
Q 002792 587 HGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCE 666 (880)
Q Consensus 587 ~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (880)
.+++.++|..|..+.|...|+.++ .=|++.+.++.+.+++....+..+.. ..+ .....|.. + ....+
T Consensus 182 g~vss~eL~~Fa~k~fv~gn~~lv-g~nvd~~~L~~~~~~~~~~~~~~~~k--~a~----a~~~gGe~---R--k~~~g- 248 (429)
T KOG2583|consen 182 GSVSSSELKDFAAKHFVKGNAVLV-GVNVDHDDLKQFADEYAPIRDGLPLK--PAP----AKYSGGEA---R--KDARG- 248 (429)
T ss_pred cCccHHHHHHHHHHHhhccceEEE-ecCCChHHHHHHHHHhccccCCCCCC--CCC----ccccCCcc---c--cccCC-
Confidence 999999999999999999998774 55678888888888772111111110 000 00011110 0 01111
Q ss_pred CCeEEEEEEeeccccCcccHHHHHHHHHHHHHhCh--------hhHHHhhhhc-cccEEEEeeeeeeCCeeeEEEEEeCC
Q 002792 667 TNSVIELYFQIEQEKGMELTRLKALIDLFDEILEE--------PFFNQLRTKE-QLGYVVECSPRVTYRVFGFCFCIQSS 737 (880)
Q Consensus 667 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s--------~l~~~lRek~-gl~Y~v~~~~~~~~~~~~~~~~i~s~ 737 (880)
+.+.++...-|- ...+.+...+..++.+.+.. .++.++--.- +-+-++.+...++.+.+.+.+++...
T Consensus 249 -~~~~v~vagegA--Aa~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~ 325 (429)
T KOG2583|consen 249 -NRVHVAVAGEGA--AAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQ 325 (429)
T ss_pred -ceeEEEEecCcc--cccchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeecccccCCceEEEEEEec
Confidence 222222221210 22345555555555555432 2343333221 12445555666666666666666543
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCCCccHHHHHHHhCC
Q 002792 738 KYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSI 816 (880)
Q Consensus 738 ~~~~~~~~~~i~~~~~~~~~~~-~~it~~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~v 816 (880)
..++.+.+......+.... .+++-..-+.+.+.+..........+....+.. .. -.....++++.|+.|
T Consensus 326 ---~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~~a~~~~~~~~-a~------~~~~~d~~i~~id~V 395 (429)
T KOG2583|consen 326 ---GSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSVEALELATGSQ-AN------LVSEPDAFIQQIDKV 395 (429)
T ss_pred ---CccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcchHHHHHhhHHH-hc------CCCChHHHHHHhccc
Confidence 2244566666666666543 677777777777777766665544432222211 11 011566889999999
Q ss_pred CHHHHHHHHHHhcccCCCCcceEEEEEecCCCCcc
Q 002792 817 KKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 851 (880)
Q Consensus 817 T~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~ 851 (880)
|..||.+++++++. .++++.-+|+-+.+|
T Consensus 396 t~sdV~~a~kk~~s------~kls~aA~Gnl~~vP 424 (429)
T KOG2583|consen 396 TASDVQKAAKKFLS------GKLSLAAYGNLSNVP 424 (429)
T ss_pred cHHHHHHHHHHhcc------CcceeeeeccccCCc
Confidence 99999999999874 479999999977664
No 24
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.27 E-value=3.6e-12 Score=118.63 Aligned_cols=96 Identities=23% Similarity=0.242 Sum_probs=91.7
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhccccCCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHH
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.+.++.+|+.+|++|+.|+|.|++++++++++.+|++|++++.+|.|++++|+++|..+..|++...++|..++.+.++
T Consensus 53 l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~ 132 (149)
T PF00675_consen 53 LQEELESLGASFNASTSRDSTSYSASVLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLH 132 (149)
T ss_dssp HHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHhhhhccccceEecccceEEEEEEecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCccccCc
Q 002792 82 HTSQLGHAFNKFFWGN 97 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~ 97 (880)
+.+|.+|||+++..|+
T Consensus 133 ~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 133 SAAFRGHPYGNPLLGP 148 (149)
T ss_dssp HHHHTTSGGGSHSS-T
T ss_pred HHHhccCCCCCCCCCC
Confidence 9999999999998886
No 25
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2e-08 Score=115.19 Aligned_cols=401 Identities=11% Similarity=-0.014 Sum_probs=228.7
Q ss_pred eEEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHhh----hhhhc--cccceEEEee
Q 002792 432 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI----IYQAS--VAKLETSVSI 505 (880)
Q Consensus 432 ~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~--~~g~~~~~~~ 505 (880)
..+.+.||+++.+..|++.. +....+.+..|....+.+..+++.+.-.|+-.+..++ .|... ..|.+.....
T Consensus 29 r~~~L~Ngl~alLisDp~tD--~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T 106 (974)
T KOG0959|consen 29 RGIELTNGLRALLISDPKTD--KSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYT 106 (974)
T ss_pred eEEEecCCceEEEecCCCCC--ccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCcccccc
Confidence 46788999999999987533 4555666655655555677889988888877554332 11122 2344455556
Q ss_pred eCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcC-CCCCH--HHH
Q 002792 506 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYDV--DEK 582 (880)
Q Consensus 506 ~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~~--~~~ 582 (880)
..+.....+....++++.+|+.+++++.+|.|.+++.++++..+-.+.+....+..+........+..+ ++++. .|.
T Consensus 107 ~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN 186 (974)
T KOG0959|consen 107 DSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGN 186 (974)
T ss_pred ccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccc
Confidence 666677777777889999999999999999999999999999999999998877666555555544443 34332 345
Q ss_pred HHHhccCC-----HHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCccccccceeEEcCCCCeEEE
Q 002792 583 LSILHGLS-----LADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVR 657 (880)
Q Consensus 583 ~~~l~~it-----~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (880)
.++|.... .+.|.+||+++|++++|+++|+|+.+.+....++...++..+....+.+.++..+. .+......+
T Consensus 187 ~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~--~~e~~~~~~ 264 (974)
T KOG0959|consen 187 KKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPF--LPEELKKLV 264 (974)
T ss_pred hhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCC--ChHHhCcEE
Confidence 56666666 89999999999999999999999999999988888887766655433222222211 111111111
Q ss_pred EeecCCCCCCCeEEEEEEeeccccCc-ccHHHHHHHHHHHHHhChhhHHHhhhhccccEEEEeeeee-eCCeeeEEEEEe
Q 002792 658 NVSVKNKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRV-TYRVFGFCFCIQ 735 (880)
Q Consensus 658 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~v~~~~~~-~~~~~~~~~~i~ 735 (880)
.+... .+.... .+.|+.++..+. .+.+.....++++.-=.+-|...||.+ |.+=+..++... ..+.+.+.+.+.
T Consensus 265 ~v~pi--k~~~~l-~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~-gw~~sl~a~~~~~as~~~~f~v~id 340 (974)
T KOG0959|consen 265 RVVPI--KDGRSL-MISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRL-GWATSLEAGIPEFASGYSFFNVSID 340 (974)
T ss_pred EEEec--cccceE-EEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHh-hchheeecCCCccccccceEEEEEE
Confidence 22222 122333 333545310011 122344445555543345677888854 555555555552 223333333333
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCCCCCccHHHHHHH
Q 002792 736 SSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKD-PSLTYESNRFWNQITDKRYMFDQSQKEAEDL 813 (880)
Q Consensus 736 s~~~~~~~~~~~i~~~~~~~~~~~-~~it~~el~~~k~~l~~~~~~~~-~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i 813 (880)
-+..--+.+++.|....+.+..+. .+.-..-+++...-=...+.... ..+.+....+-..+. .|+....-.....+
T Consensus 341 Ltd~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq--~~P~~~il~~~~ll 418 (974)
T KOG0959|consen 341 LTDEGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQ--YYPVEDVLTGSYLL 418 (974)
T ss_pred eccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcc--cCChHHhhcchhhh
Confidence 211223445555555555554332 34433333333211111111111 122222222222211 23333222333455
Q ss_pred hCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCC
Q 002792 814 KSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNT 848 (880)
Q Consensus 814 ~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~ 848 (880)
....++.|+.+... |.|. .+.+++++...
T Consensus 419 ~~~~p~~i~~~~~~-L~p~-----n~~v~~~s~~~ 447 (974)
T KOG0959|consen 419 TEFDPDLIQEVLSS-LVPS-----NMRVILVSRSF 447 (974)
T ss_pred hhcChHHHHHHHHh-cCcc-----cceeeeeeecc
Confidence 66777777777654 6653 56666665543
No 26
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.7e-09 Score=109.32 Aligned_cols=390 Identities=14% Similarity=0.060 Sum_probs=236.1
Q ss_pred cCCCceEEEeccCcccccceEEEEEEEcCCCcCCH-------------HHHHHHHHHHHHHHHHHHhhhhhhccccceEE
Q 002792 436 DEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNV-------------KNCILTELFIHLLKDELNEIIYQASVAKLETS 502 (880)
Q Consensus 436 ~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~ 502 (880)
...|+++.+...++ +...+++.|+.+...+.. ...+...=|-.+++.++.-+.. + +.+-++.
T Consensus 59 ~~Tgae~lhl~reD---~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmN-A-fT~pD~T 133 (998)
T KOG2019|consen 59 KKTGAEVLHLDRED---ENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMN-A-FTAPDYT 133 (998)
T ss_pred cCCCceeEeeccCC---CCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHh-h-ccCCCcc
Confidence 35688886665544 345678888877642211 1112223355566666654332 1 1122222
Q ss_pred EeeeCceEEEEEeccCCCHHHHHHHHHHHHhcCCCCHHHHHHH------------------HHHHHHHHhccccChhhHH
Q 002792 503 VSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVI------------------KEDVVRTLKNTNMKPLSHS 564 (880)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~------------------k~~~~~~~~~~~~~p~~~a 564 (880)
++. ..+.-+.++..+.+...|....|...+..|.++ |..+-++++....+|....
T Consensus 134 ~yP-------fattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if 206 (998)
T KOG2019|consen 134 FYP-------FATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIF 206 (998)
T ss_pred eee-------cccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHH
Confidence 222 122234678888888999988888766666653 3445567777777788777
Q ss_pred HHHHHHhhcC-CCCCH--HHHHHHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCCcccc
Q 002792 565 SYLRLQVLCQ-SFYDV--DEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMR 641 (880)
Q Consensus 565 ~~~~~~~l~~-~~~~~--~~~~~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~~~~~ 641 (880)
...+.+.+++ +.|+. -+.+-.|-.++.+++++||+++|+|+|.+++-.||++-++...+++.-+.......... ..
T Consensus 207 ~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~-kv 285 (998)
T KOG2019|consen 207 GMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSS-KV 285 (998)
T ss_pred HHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccC-cc
Confidence 7777777765 34443 24567799999999999999999999999999999999888777763322222211100 00
Q ss_pred ccceeEEcCCCCeEEEEeec--CCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh----ChhhHHHhhhhcccc-
Q 002792 642 HQECVICLPSGANLVRNVSV--KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL----EEPFFNQLRTKEQLG- 714 (880)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l----~s~l~~~lRek~gl~- 714 (880)
+.... ..+...++...+. ...-..+....+.+..+ .+.+..+..++.+|+.+| +|.+++.|-|. |||
T Consensus 286 ~~qk~--f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~---~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiES-GLGt 359 (998)
T KOG2019|consen 286 TFQKL--FDKPRRVVEKGPADPGDLPKKQTKCSNSFLSN---DPLDTYETFALKVLSHLLLDGPSSPFYKALIES-GLGT 359 (998)
T ss_pred ccccc--cccCceeeeecCCCCCCCccceeEEEEEeecC---CchhHHHHHHHHHHHHHhcCCCccHHHHHHHHc-CCCc
Confidence 00000 1111111111111 11112344445555443 455667788889998876 68899988875 666
Q ss_pred -EEEEeeeeeeCCeeeEEEEEeCC-CCChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCChHH-HHHH
Q 002792 715 -YVVECSPRVTYRVFGFCFCIQSS-KYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTY-ESNR 791 (880)
Q Consensus 715 -Y~v~~~~~~~~~~~~~~~~i~s~-~~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~~~~s~~~-~~~~ 791 (880)
.++.+++....-..-+.+.+++- ..+.+.+++.|..+++.+.+ +++..+.++.....+--++.......+- .+..
T Consensus 360 EfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae--~gfd~drieAil~qiEislk~qst~fGL~L~~~ 437 (998)
T KOG2019|consen 360 EFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAE--TGFDNDRIEAILHQIEISLKHQSTGFGLSLMQS 437 (998)
T ss_pred ccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 77777777655455566666653 25678888888887777765 7898888888877777666654433221 1222
Q ss_pred HHHHHhcCCCCCCcc------HHHHHHHhCCCHHHHHHHHHHhcccCCCCcceEEEEEecCCCC
Q 002792 792 FWNQITDKRYMFDQS------QKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 849 (880)
Q Consensus 792 ~~~~i~~~~~~~~~~------~~~~~~i~~vT~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~ 849 (880)
....+.++.-+|++. +...+.+..-.+.=++..+++|+..+ ...+++.+.|+...
T Consensus 438 i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn---~h~~t~smqpd~e~ 498 (998)
T KOG2019|consen 438 IISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNN---PHCFTFSMQPDPEF 498 (998)
T ss_pred HhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcC---CceEEEEecCCchh
Confidence 223333444455543 23444454445666899999999743 45788888877553
No 27
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.58 E-value=3e-07 Score=85.46 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=109.5
Q ss_pred eEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHH-----HhhhhhhccccceEEEeeeCceEEEEEe
Q 002792 441 RFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL-----NEIIYQASVAKLETSVSIFSDKLELKVY 515 (880)
Q Consensus 441 ~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 515 (880)
+|++..++. .|.+.+.+.+..|....+....+++.++..++..+. .+........|..++..++.+.+.+.++
T Consensus 1 ~V~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~ 78 (149)
T PF00675_consen 1 KVVLVEDPG--SPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSAS 78 (149)
T ss_dssp EEEEEESTT--SSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEE
T ss_pred CEEEEEcCC--CCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEE
Confidence 466666643 578888888877776777777888888888776542 1122223346888999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccChhhHHHHHHHHhhcC-CCC
Q 002792 516 GFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY 577 (880)
Q Consensus 516 g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~ 577 (880)
+++++++.+|+++.+.+.+|.|++++|+++|..++.+++....+|...+.+.+...++. ++|
T Consensus 79 ~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~ 141 (149)
T PF00675_consen 79 VLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPY 141 (149)
T ss_dssp EEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGG
T ss_pred EecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999998888988999999888875 444
No 28
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.9e-06 Score=89.20 Aligned_cols=302 Identities=13% Similarity=0.108 Sum_probs=175.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHH----------HHHHHHhccccChhhHHHHHHHHhhcCC--CC--CHHHHH
Q 002792 518 NDKLPVLLSKILAIAKSFLPSDDRFKVIKE----------DVVRTLKNTNMKPLSHSSYLRLQVLCQS--FY--DVDEKL 583 (880)
Q Consensus 518 ~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~----------~~~~~~~~~~~~p~~~a~~~~~~~l~~~--~~--~~~~~~ 583 (880)
++.+-.+|..+.+.+.+|.++.++|-.+.- .+-.+++....+....+.+..+.++|+. +| ..-+.+
T Consensus 108 ~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~ 187 (1022)
T KOG0961|consen 108 SDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRL 187 (1022)
T ss_pred ccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCCh
Confidence 578999999999999999999999987642 2334454444444555566667777753 33 234578
Q ss_pred HHhccCCHHHHHHHHHHHHhccceeEEeecCCCHHHHHHHHHHHHhhhcCCCCC-ccccccce-----eEEcCCCCeEEE
Q 002792 584 SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLP-IEMRHQEC-----VICLPSGANLVR 657 (880)
Q Consensus 584 ~~l~~it~~dl~~~~~~~~~~~~~~~~v~Gd~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~-----~~~~~~~~~~~~ 657 (880)
..|..+|.+.+++||+++|+++|+-+.|+|+++.+++....+.+-+.+...+.. +..++.+- ...+++.+..
T Consensus 188 knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~-- 265 (1022)
T KOG0961|consen 188 KNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVH-- 265 (1022)
T ss_pred hhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCcccee--
Confidence 889999999999999999999999999999999999998877666544322110 01111100 0112222222
Q ss_pred EeecCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhCh----hhHHHhhh-hccccEEEEeeeeee-CCeeeEE
Q 002792 658 NVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEE----PFFNQLRT-KEQLGYVVECSPRVT-YRVFGFC 731 (880)
Q Consensus 658 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s----~l~~~lRe-k~gl~Y~v~~~~~~~-~~~~~~~ 731 (880)
.++.+..+..+..+.+.| .|+ +..+.+...++++|-++|+. .+-+++-| +.-++-++++..... ++. +.
T Consensus 266 tVefp~~Des~G~v~~aW-~g~--s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f~~~~~vrc~--i~ 340 (1022)
T KOG0961|consen 266 TVEFPTDDESRGAVEVAW-FGH--SPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSFHIAEGVRCD--IR 340 (1022)
T ss_pred eeecCCcccccceEEEEE-cCC--CHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceeeeeeccccee--EE
Confidence 234444456788888888 443 45567778888888888864 33344444 334455554444332 221 22
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCC---C-
Q 002792 732 FCIQSSKYNPIYLQERIDNFISGLDELLEGLDDES----FENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYM---F- 803 (880)
Q Consensus 732 ~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~it~~e----l~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~---~- 803 (880)
..+++ +..+++...-..++..+.+. ..+.=+- ++..+...+-++.....+.. +.......+.|+-+ +
T Consensus 341 L~f~g--VP~EKi~~~~~k~l~~l~et-~~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~f--ms~ii~d~~ygnedg~~l~ 415 (1022)
T KOG0961|consen 341 LNFAG--VPVEKIDECAPKFLDKLVET-ANIDMERMGYLIDQTILNYLVNLETNAPSDF--MSHIIGDQLYGNEDGELLK 415 (1022)
T ss_pred EeecC--CcHHHhhhhhHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcCChHHH--HHHHhhhhhccCcchhHHH
Confidence 22333 45677776666666655432 2233222 22333333333332222111 11111111112100 0
Q ss_pred Ccc--HHHHHHHhCCCHHHHHHHHHHhccc
Q 002792 804 DQS--QKEAEDLKSIKKNDVISWYKTYLQQ 831 (880)
Q Consensus 804 ~~~--~~~~~~i~~vT~edi~~~~~~~l~~ 831 (880)
... -.+.+.|.+....|-+++.+|||..
T Consensus 416 ~~lk~l~~~~~L~~w~~kdW~~Llnk~Fve 445 (1022)
T KOG0961|consen 416 KRLKELDFLKKLKSWPAKDWVQLLNKYFVE 445 (1022)
T ss_pred HHHHhHHHHHHHhhccHHHHHHHHHHHhcc
Confidence 000 1455677888899999999999963
No 29
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=97.75 E-value=7.7e-05 Score=75.39 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=99.4
Q ss_pred CCeEEecCCCceEEEeccCcccccceEEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHh-h-------hhhhccccceE
Q 002792 430 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-I-------IYQASVAKLET 501 (880)
Q Consensus 430 ~p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-------~~~~~~~g~~~ 501 (880)
.|......+|++|++++..+ .+.+|+++.++....+.+...+..|++.+++...++ . ......+|+++
T Consensus 69 ~~~~~~~~~~~~v~~~~~~T----nGI~Y~~l~fdl~~l~~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~ 144 (248)
T PF08367_consen 69 IPLEVEKLGGIPVLFHEQPT----NGIVYVRLYFDLSDLPEEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISF 144 (248)
T ss_dssp ---EECCCTTCEEEEEE-------TTEEEEEEEEE-TTS-CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEE
T ss_pred CCceeeecCCccEEEEEcCC----CCeEEEEEEecCCCCCHHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEE
Confidence 45556666899999998776 577888888777656667778888888887643321 1 12234578887
Q ss_pred EEeeeC---------ceEEEEEeccCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhccccC-hhhHHHHHHHH
Q 002792 502 SVSIFS---------DKLELKVYGFNDKLPVLLSKILAIAKSFLPS-DDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQ 570 (880)
Q Consensus 502 ~~~~~~---------~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~-~~~f~~~k~~~~~~~~~~~~~-p~~~a~~~~~~ 570 (880)
++.+.. ..+.++++++.++++++++++.+++.++.|+ .+++..+..+.+..+.+...+ ++..|..++
T Consensus 145 ~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A~~ra-- 222 (248)
T PF08367_consen 145 SIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYAMSRA-- 222 (248)
T ss_dssp EEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC--
T ss_pred EeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--
Confidence 775543 4789999999999999999999999999997 567777777777777665544 565555554
Q ss_pred hhcCCCCCHHHHHH-HhccCC
Q 002792 571 VLCQSFYDVDEKLS-ILHGLS 590 (880)
Q Consensus 571 ~l~~~~~~~~~~~~-~l~~it 590 (880)
...++..+.++ .+.+++
T Consensus 223 ---~s~~s~~~~~~e~~~Gl~ 240 (248)
T PF08367_consen 223 ---SSYLSRSGALDELWSGLS 240 (248)
T ss_dssp ---CCTT-HHHHHHHHHHSHH
T ss_pred ---HhcCCHHHHHHHHHcCHH
Confidence 33445544443 345553
No 30
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=68.48 E-value=59 Score=35.21 Aligned_cols=132 Identities=11% Similarity=0.153 Sum_probs=77.3
Q ss_pred cccccCCCCceEEEe-eCccchHHHHHHHHhhcccc-----CCCchhHHHHHHhHHHHHhhhcCChHHHHHHHHHhhCCC
Q 002792 13 SNAYTETEHTCYHFE-IKREFLKGALMRFSQFFISP-----LMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQL 86 (880)
Q Consensus 13 ~na~T~~d~T~y~~~-~~~~~l~~~l~~l~~~~~~p-----~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~ 86 (880)
.||+|++.+..|+.. +.......+++-+..||+.- .|+...+..-+..+.+|+--+. ...--++.+ ..+.+
T Consensus 57 ANASTaRsYMSFWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYFRn--EvfHCmDvL-tfL~g 133 (590)
T PF03410_consen 57 ANASTARSYMSFWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYFRN--EVFHCMDVL-TFLGG 133 (590)
T ss_pred cccchhhhhhhhhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhhhh--hHHHHHHHH-HHhcC
Confidence 499999999999986 44556677888888888753 3666666666677777765332 232233333 34456
Q ss_pred CCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCC
Q 002792 87 GHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 157 (880)
Q Consensus 87 ~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~ 157 (880)
|.-|. .|-..-|.+.. ...+-|.+=-++- ...|.++. +-.++ +.+..++++.||.+|+-+.
T Consensus 134 GDLYN---GGRi~ML~~l~----~i~~mL~~RM~~I-~GpniVIF-Vk~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 134 GDLYN---GGRIDMLNNLN----DIRNMLSNRMHRI-IGPNIVIF-VKELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred CcccC---CchHHHHhhhH----HHHHHHHHHHHhh-cCCcEEEE-EeccC-HHHHHHHHHhcCCCCCCcc
Confidence 66553 22222233200 1122333222232 33444444 44577 6678899999999986653
No 31
>PHA03081 putative metalloprotease; Provisional
Probab=64.62 E-value=71 Score=34.67 Aligned_cols=132 Identities=12% Similarity=0.159 Sum_probs=77.0
Q ss_pred cccccCCCCceEEEe-eCccchHHHHHHHHhhccccC-----CCchhHHHHHHhHHHHHhhhcCChHHHHHHHHHhhCCC
Q 002792 13 SNAYTETEHTCYHFE-IKREFLKGALMRFSQFFISPL-----MKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQL 86 (880)
Q Consensus 13 ~na~T~~d~T~y~~~-~~~~~l~~~l~~l~~~~~~p~-----~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~ 86 (880)
.||+|++.+..|+.. +.......++.-+..||+.+. |....++.-+..+.+|+--+. ...--++.+ ..+.+
T Consensus 57 anast~r~ymsfwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYFRn--EvfHCmDvL-TfL~g 133 (595)
T PHA03081 57 ANASTARSYMSFWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYYFRN--EVFHCMDVL-TFLGG 133 (595)
T ss_pred ccchhhhhhHhHhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhhhhh--hhHHHHHHH-HHhcC
Confidence 499999999999985 444556789999999998765 555555555666666665332 222233333 44556
Q ss_pred CCCCCccccCchhcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHHhhcccccCCCC
Q 002792 87 GHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 157 (880)
Q Consensus 87 ~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~~~~~~~ 157 (880)
|.-|. .|-..-|.+.. ...+-|.+=-++- ...|.++.| -..+ +.+..++.+.||.+|+-+.
T Consensus 134 GDLYN---GGRi~ML~~l~----~i~~~L~~RM~~I-~GpniVIFV-k~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 134 GDLYN---GGRIDMLDNLN----DVRDMLSNRMHRI-SGPNIVIFV-KELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred CcccC---CchHHHHhhhH----HHHHHHHHHHHhh-cCCcEEEEE-eccC-HHHHHHHHHhcCCCCCCcc
Confidence 66553 22233333210 1122222222222 344454444 4566 6678899999999986653
No 32
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=56.58 E-value=19 Score=22.62 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=13.8
Q ss_pred hCCCHHHHHHHHHHHH
Q 002792 760 EGLDDESFENYRSGLM 775 (880)
Q Consensus 760 ~~it~~el~~~k~~l~ 775 (880)
+.+|++||++.|..++
T Consensus 15 G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 15 GEISEEEYEQKKARLL 30 (31)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4599999999998876
No 33
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=37.34 E-value=1.5e+02 Score=26.89 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=40.8
Q ss_pred HHHHHhhCccccccccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhh
Q 002792 219 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 295 (880)
Q Consensus 219 L~~~Lr~~gl~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~ 295 (880)
+.+.|.++||+.-.....+ .. . ..+.+|++|.+-.+++...+.+.+..-.-.+++++|.+.+...+
T Consensus 74 ~l~~Le~~GlI~R~~~~~D-----rR----~--~~l~LT~~G~~~~~~~~~~~~~~~~~~l~~~ls~ee~~~l~~~L 139 (144)
T PRK11512 74 MLDRLVCKGWVERLPNPND-----KR----G--VLVKLTTSGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLL 139 (144)
T ss_pred HHHHHHHCCCEEeccCccc-----CC----e--eEeEEChhHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5567778999986533221 22 3 34456788876666666655444433334689999888876544
No 34
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=31.10 E-value=2.2e+02 Score=25.71 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=42.1
Q ss_pred HHHHHhhCccccccccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhh
Q 002792 219 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 295 (880)
Q Consensus 219 L~~~Lr~~gl~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~ 295 (880)
+.+.|.++||+.......+ .. ...+.+|++|.+-.+++.....+..+.+. .++++++.+.+...+
T Consensus 66 ~v~~Le~~GlV~r~~~~~D-----rR------~~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~ee~~~l~~~l 130 (144)
T PRK03573 66 TLDQLEEKGLISRQTCASD-----RR------AKRIKLTEKAEPLISEVEAVINKTRAEIL-HGISAEEIEQLITLI 130 (144)
T ss_pred HHHHHHHCCCEeeecCCCC-----cC------eeeeEEChHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 5566778999986543221 22 23455678887767766666655555554 589998888876544
No 35
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=31.01 E-value=1.6e+02 Score=23.50 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Q 002792 739 YNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLE 780 (880)
Q Consensus 739 ~~~~~~~~~i~~~~~~~~~~~~~it~~el~~~k~~l~~~~~~ 780 (880)
++|..+...+.+.-..+. .+.||++||++....++..+..
T Consensus 28 ~Dp~~i~~~L~~L~~~~e--~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 28 YDPAAIRRELAELQEALE--AGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred cCHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHH
Confidence 467666555554433332 2679999999999999988753
No 36
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=30.29 E-value=71 Score=23.03 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=37.7
Q ss_pred hhhhhhhcCCccccccCCCCceEEEeeCccchHHHHHHHHhhcc
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFI 45 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~ 45 (880)
+..+|+.+|+.+--....+.-.+.+.++.+..+...+.+.++..
T Consensus 11 v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t~ 54 (56)
T PF09186_consen 11 VERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLTS 54 (56)
T ss_dssp HHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHcC
Confidence 56788999999877777777999999999999999999888753
No 37
>PRK10870 transcriptional repressor MprA; Provisional
Probab=27.38 E-value=2.7e+02 Score=26.30 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=44.8
Q ss_pred HHHHHhhCccccccccccCCCCCCCcccceEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhh
Q 002792 219 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 295 (880)
Q Consensus 219 L~~~Lr~~gl~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~el~~~k~~~ 295 (880)
+.+.|.++||+.-.....+ .. ...+.+|++|.+-++++.....+..+.+. .++++++.+.+...+
T Consensus 91 ~v~rLe~kGlV~R~~~~~D-----rR------~~~v~LT~~G~~~~~~i~~~~~~~~~~~~-~~ls~~e~~~l~~~L 155 (176)
T PRK10870 91 IADELEKRGWIERRESDND-----RR------CLHLQLTEKGHEFLREVLPPQHNCLHQLW-SALSTTEKDQLEQIT 155 (176)
T ss_pred HHHHHHHCCCEEecCCCCC-----CC------eeEEEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 5567779999985433211 12 23456788888888888887777777775 579998888775543
No 38
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=26.75 E-value=4.5e+02 Score=26.46 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=57.1
Q ss_pred EcCcceEEEEEEecCCchhhhhcChHHHHHHHhcCCCCCc-HHHHHh-----hC-ccccccccccCCCCCCCcccceEEE
Q 002792 179 AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGS-LHSFLK-----GR-GWATSISAGVGDEGMHRSSIAYIFV 251 (880)
Q Consensus 179 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~-L~~~Lr-----~~-gl~~~~~~~~~~~~~~~~~~~g~~~ 251 (880)
+......+.+.|.++..+.. +..-+.+++.+|+.-+.+. =+..|. .- |+..++.+...... .......|.
T Consensus 87 ~TnGI~Y~~l~fdl~~l~~e-~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~--~~~~~~~l~ 163 (248)
T PF08367_consen 87 PTNGIVYVRLYFDLSDLPEE-DLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDD--DDKYRPYLV 163 (248)
T ss_dssp --TTEEEEEEEEE-TTS-CC-CHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECT--ECCCEEEEE
T ss_pred CCCCeEEEEEEecCCCCCHH-HHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCC--ccceeEEEE
Confidence 44566789999999877653 6677899999999765554 233442 22 33334433332211 111234788
Q ss_pred EEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCch
Q 002792 252 MSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQK 285 (880)
Q Consensus 252 i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~ 285 (880)
|++.+-. ++++++++.+.+.+.. ..|++
T Consensus 164 is~k~L~---~~~~~~~~ll~eil~~---~~f~d 191 (248)
T PF08367_consen 164 ISAKCLD---EKLDEAFELLSEILTE---TDFDD 191 (248)
T ss_dssp EEEEEEG---GGHHHHHHHHHHHHHC---B-TT-
T ss_pred EEEEeHh---hhHHHHHHHHHHHHhc---cCCCc
Confidence 8888887 7888888877777654 34554
No 39
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=21.46 E-value=4.1e+02 Score=22.30 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHhhhhccccEEEEeeeeeeCCeeeEEEEEeCCCCChHH-HHHHHHHHHHHHHHHHhCC
Q 002792 705 NQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY-LQERIDNFISGLDELLEGL 762 (880)
Q Consensus 705 ~~lRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~-~~~~i~~~~~~~~~~~~~i 762 (880)
..|++..+--++.+.-.++..+..-+.+-+.++ ++|.. +.+++..+++.+..+...+
T Consensus 34 ~~L~~d~~V~~a~Y~i~HP~~~~~~i~Ikt~~~-~dp~~aL~~A~~~i~~~~~~l~~~~ 91 (99)
T COG1761 34 EELLKDEDVEFAAYSIPHPLIDNPKIRIKTKGG-VDPKEALKRAARKILKDLEELLDQF 91 (99)
T ss_pred HHHhCCCCeeEEEEeCCCCCCCCceEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444444444444433333333333 46543 3344455554444433333
No 40
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.29 E-value=1.2e+02 Score=29.04 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=37.2
Q ss_pred hcchhhhhcCccHHHHHHHHHhhccCcCCcEEEEEcCCCHHHHHHHHH
Q 002792 99 KSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVV 146 (880)
Q Consensus 99 ~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~ 146 (880)
+.|-....-|.++.+++.++.+. +|.++.||++|.--++++.+++.
T Consensus 122 DEi~~Al~~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 122 DELTYALKYGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred ehhhHHHHCCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCc
Confidence 33444445667999999999975 89999999999988998888774
Done!