Query 002792
Match_columns 880
No_of_seqs 249 out of 2691
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 18:04:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002792.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1506-1510//hhsearch_pdb/002792hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 1.0 1 1 841.0 90.8 849 2-879 84-937 (939)
2 3cww_A Insulysin, insulin-degr 1.0 1 1 833.5 95.2 860 2-880 98-980 (990)
3 2fge_A Atprep2;, zinc metallop 1.0 1 1 607.3 44.0 791 3-853 97-981 (995)
4 3s5m_A Falcilysin; M16 metallo 1.0 1 1 564.9 36.1 813 5-855 150-1181(1193)
5 3eoq_A Putative zinc protease; 1.0 1 1 352.1 25.8 338 2-361 64-404 (406)
6 3ami_A Zinc peptidase; alpha/b 1.0 1 1 351.6 29.0 346 2-362 69-423 (445)
7 3hdi_A Processing protease; CA 1.0 1 1 336.0 28.1 339 2-362 64-405 (421)
8 1pp9_A Ubiquinol-cytochrome C 1.0 1 1 329.0 26.7 396 433-851 16-432 (446)
9 1hr6_B Beta-MPP, mitochondrial 1.0 1 1 320.7 26.7 401 431-851 7-432 (443)
10 3amj_B Zinc peptidase inactive 1.0 1 1 315.4 28.4 397 431-851 4-418 (424)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=841.00 Aligned_cols=849 Identities=22% Similarity=0.365 Sum_probs=724.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 11040113895430038997059986194665889999984221269992028999986798986303881889999998
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.++++++||.+||+|+.|+|+|++++++++++.+|++|+|++.+|.|+++++++|+++|.+|+++..++|.+++.+.+.
T Consensus 84 ~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~ 163 (939)
T 1q2l_A 84 LAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSA 163 (939)
T ss_dssp HHHHHHTTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999976995157988986799999478999999999999985779998999999999999998564987999999999
Q ss_pred HHCCCCCCCCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 41799999985555833310105316963899999999610475776799975998899999999544445588888998
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ 161 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~i~~~~~~~~~ 161 (880)
.++|++|||+++++|+.++|.+ ..+.++.++|++||++||+|+||+|+|+||+|+++++++++++|+.||++..+.+.
T Consensus 164 ~~~~~~~p~~~~~~G~~~~l~~--~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~ 241 (939)
T 1q2l_A 164 ETINPAHPGSKFSGGNLETLSD--KPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPE 241 (939)
T ss_dssp HSSCTTSGGGSCCSCCHHHHSC--BTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCC
T ss_pred HHCCCCCCCCCCCCCCHHHHHC--CCCCHHHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 7568999976678899999716--78845999999999961587356999974999999999999986433358878997
Q ss_pred CCCCCCCCC---CCEEEEEEECCCCEEEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 764553334---44089999737621799997369960565207099999973589999588999637543410112278
Q 002792 162 FTVEGTIWK---ACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGD 238 (880)
Q Consensus 162 ~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~~~~~ 238 (880)
. ..+++. .+..+...+..++..+.++|+.|...+.++..++.+++++||+++.++|++.||++||+|+++++...
T Consensus 242 ~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~ 319 (939)
T 1q2l_A 242 I--TVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDP 319 (939)
T ss_dssp C--CSCSCCGGGSSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEES
T ss_pred C--CCCCCCHHHCCEEEEEEECCCCCEEEEEEECCCHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCHHEEECCCC
T ss_conf 8--88999978947799998278771899999768727766547899999995689987199999876971212433455
Q ss_pred CCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 87887653018999999298559769999999999999999359935799999985303322467899168999999747
Q 002792 239 EGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL 318 (880)
Q Consensus 239 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (880)
. ...+.|.|.|++.+++.|.++++++++.++++++++++.|+++++++++|+.+...+.+....++...+..++..+
T Consensus 320 ~---~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (939)
T 1q2l_A 320 I---VNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTM 396 (939)
T ss_dssp S---TTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHH
T ss_pred C---CCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 5---6888518999999894666529999999999999998679859999999999872203457788599999999986
Q ss_pred CCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 79996560003744767899999999730394455777882687788887424301132223348978898623999999
Q 002792 319 LIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEID 398 (880)
Q Consensus 319 ~~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~ 398 (880)
..+++++++.+...++++|+++|+++++++.++++++++++|. ...++.++||+++|....++.+.++.|..... .
T Consensus 397 ~~~~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 472 (939)
T 1q2l_A 397 IRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPK---EPHNKTAYFVDAPYQVDKISAQTFADWQKKAA-D 472 (939)
T ss_dssp TTSCGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTT---CCCCEECTTTCCEEEEEECCHHHHHHHHHHHH-T
T ss_pred HCCCHHHHHCCCHHHHCCCHHHHHHHHHHCCHHHCEEEEECCC---CCCCCCCCEECCEEEEEECCHHHHHHHHCCCC-C
T ss_conf 5089999711722131069999999998469877489998278---88773345437742563089999998754686-5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC-CEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 8788998997789995333257787876899993875179815898136743564-148999997288867989999999
Q 002792 399 VSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLP-RANTYFRINLKGGYDNVKNCILTE 477 (880)
Q Consensus 399 ~~~~~p~~~~~ip~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~~~~~~~~~~p-~~~i~~~~~~~~~~~~~~~~~~~~ 477 (880)
..+.+|.+|+|+|.++.+...... ...|..+.++||++||+++++.|+.| ++.+++.+.++.+..++++.+++.
T Consensus 473 ~~~~~p~~n~~~~~~~~~~~~~~~-----~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~ 547 (939)
T 1q2l_A 473 IALSLPELNPYIPDDFSLIKSEKK-----YDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFA 547 (939)
T ss_dssp CCCCCCCCCTTCCCCCCCCCCSSC-----CSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCEEEEECCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf 356699977678867530567678-----999979997798168555787558998679999995896558999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999997660210002626798451853799991268997999999999985079998899999999999972155
Q 002792 478 LFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTN 557 (880)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~s~~l~~~l~~l~~~l~~~~~~~~~f~~~k~~~~~~~~~~~ 557 (880)
+++.++..++.+..+.+.++|++++++. .+++.++++|++++++.+++++.+.+.+|.|+++.|+.+|+.++..+++..
T Consensus 548 l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~ 626 (939)
T 1q2l_A 548 LNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAE 626 (939)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999987527997694899960-895799997656769999999999974789899999999999999976342
Q ss_pred C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6-915579999998534799999889987216999999999999986010258762379999999999999855158999
Q 002792 558 M-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPL 636 (880)
Q Consensus 558 ~-~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~~v~Gdi~~~~~~~~~~~~~~~l~~~~~ 636 (880)
. +|...+.+.+..+++++.++..+..+.|++++++++++|+++++.+.+++++|+||++.++++.+++.+++.++..+.
T Consensus 627 ~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~ 706 (939)
T 1q2l_A 627 KGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGS 706 (939)
T ss_dssp CSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCS
T ss_pred HCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 06839999999999966899999999999851899999999999986420899997598999999999999999736886
Q ss_pred CCCCCCCCEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEE
Q ss_conf 92223454068869998189985058989978399999960445693428999999999997484567886310143089
Q 002792 637 PIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYV 716 (880)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~lRek~gl~Y~ 716 (880)
+ ....+....+.+....+. ...+...++.+..+++. +..+.+..+++.+|+++++++||++|||++||||+
T Consensus 707 ~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lL~~~~~s~lf~~LRek~gl~Y~ 777 (939)
T 1q2l_A 707 E---WCRNKDVVVDKKQSVIFE--KAGNSTDSALAAVFVPT----GYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYA 777 (939)
T ss_dssp C---CCCCEEECCCSCEEEEEE--ECCSSSCEEEEEEEECS----SCCHHHHHHHHHHHHHHHHHHHTHHHHTSCCSSSC
T ss_pred C---CCCCCEEEECCCCEEEEE--CCCCCCCCEEEEEEEEC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 5---554535870799548996--68999874269999966----99999999999999999888889999999874715
Q ss_pred EEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 98212453782359999968999957899999999999999980799999999999999997099999689999999998
Q 002792 717 VECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQI 796 (880)
Q Consensus 717 v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i 796 (880)
|+++.....+..|+.|++++..++|+++.+++..|++++.+...++|++||+++|+++++++....+++..+++++|..+
T Consensus 778 v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i 857 (939)
T 1q2l_A 778 VFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDF 857 (939)
T ss_dssp EEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHH
T ss_pred EEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 53467653975689999987999989999999999999999998689999999999999986179998999999999998
Q ss_pred HCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 52887878428899999179999999999986034899734599998458889201110257753126958886047322
Q 002792 797 TDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEKHSKSALVIKDLTAFKLSSEFY 876 (880)
Q Consensus 797 ~~~~~~~~~~~~~~~~i~~it~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (880)
..+++.+++.+.+++.|++||++||++++++|+.+ +.+.+++++|+|+.....+++. ..++..|+++.+||+..+.|
T Consensus 858 ~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~--~~~~~l~v~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 934 (939)
T 1q2l_A 858 DRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVE--PQGMAILSQISGSQNGKAEYVH-PEGWKVWENVSALQQTMPLM 934 (939)
T ss_dssp HHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTS--CSSEEEEEEECCSSHHHHCCCC-CTTCEECSCHHHHHTTSCEE
T ss_pred HCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCCCCCCC-CCCCCEECCHHHHHHCCCCC
T ss_conf 53898878689999998608999999999998447--7777799999667887531014-67770707899984347665
Q ss_pred CCC
Q ss_conf 268
Q 002792 877 QSL 879 (880)
Q Consensus 877 ~~~ 879 (880)
|.+
T Consensus 935 ~~~ 937 (939)
T 1q2l_A 935 SEK 937 (939)
T ss_dssp ECC
T ss_pred CCC
T ss_conf 314
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=1.00 E-value=1 Score=833.52 Aligned_cols=860 Identities=35% Similarity=0.601 Sum_probs=734.9
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 11040113895430038997059986194665889999984221269992028999986798986303881889999998
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.++++++||.+||+|+.|+|+|++++++++++.+|+++++++.+|.|+++++++|+.+|.+|+++..+++.+++++.+.
T Consensus 98 ~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~ 177 (990)
T 3cww_A 98 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEK 177 (990)
T ss_dssp HHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999976995068988984599999378999999999999985758998999999999999998553883999999999
Q ss_pred HHCCCCCCCCCCCCCCHHCCHH-HHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4179999998555583331010-531696389999999961047577679997599889999999954444558888899
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIG-AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKP 160 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~-~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~i~~~~~~~~ 160 (880)
..++++|||+++++|+.++|.. |..++..+.++|++||++||+|+||+|+|+||+|+++++++|+++|+.|+++..+.+
T Consensus 178 ~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~ 257 (990)
T 3cww_A 178 ATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLP 257 (990)
T ss_dssp HTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 85689999634788989998402010465299999999997177866389998699999999999997137865788899
Q ss_pred CCCCCCCCCC---CCEEEEEEECCCCEEEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 8764553334---4408999973762179999736996056520709999997358999958899963754341011227
Q 002792 161 QFTVEGTIWK---ACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVG 237 (880)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~~~~ 237 (880)
.+ ..+++. .+..+...+..+...+.++|++|...+.++..++.+++++||+++.++|++.||++||+|+++++..
T Consensus 258 ~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~ 335 (990)
T 3cww_A 258 EF--PEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQK 335 (990)
T ss_dssp CC--CSCSSCGGGSSEEEEECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEE
T ss_pred CC--CCCCCCHHHCCEEEEEEECCCCCEEEEEEECCCHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCC
T ss_conf 88--8899996780769999987877489999976880565555889999999569999948999987797112565356
Q ss_pred CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88788765301899999929855976999999999999999935993579999998530332246789916899999974
Q 002792 238 DEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN 317 (880)
Q Consensus 238 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (880)
.... +.|.|.|.+.+++.|.++++++++.++++++++++.|++++++++++......+.+....++.+.+..++..
T Consensus 336 ~~~~----~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (990)
T 3cww_A 336 AGAR----GFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI 411 (990)
T ss_dssp EEET----TEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred CCCC----CCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 6778----851799999988477654999999999999999857983899999999999736667769979999999999
Q ss_pred CCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 77999656000374476789999999973039445577788268778888742430113222334897889862399999
Q 002792 318 LLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEI 397 (880)
Q Consensus 318 ~~~~~~~~~l~~~~~~~~vt~~~i~~~~~~l~~~~~~i~~~~p~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~ 397 (880)
+...++++++.+...+.++|+++|+++++++.++++++++++|.+ .....+.++||+++|....++.++++.|.....
T Consensus 412 ~~~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~~-~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~- 489 (990)
T 3cww_A 412 LHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSF-EGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAAL- 489 (990)
T ss_dssp TTTSCGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGGG-TTCCCEECTTTCCEEEEEECCHHHHHHHHTCCC-
T ss_pred HHHCCHHHHHCCCHHHHCCCHHHHHHHHHHCCHHHEEEEEECCCC-CCCCCCCCCEECCEEEEECCCHHHHHHHHCCCC-
T ss_conf 862799997326224531899999999984697677999973777-777673331637621562389999997645788-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 98788998997789995333257787876899993875179815898136743564148999997288867989999999
Q 002792 398 DVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTE 477 (880)
Q Consensus 398 ~~~~~~p~~~~~ip~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~ 477 (880)
.+.+.+|..|+|+|.++.+.+..... ...|..+.++||++||++++++|+.|++.+++.+.++.+..++++.+++.
T Consensus 490 ~~~~~~p~~~~~ip~~~~~~~~~~~~----~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~ 565 (990)
T 3cww_A 490 NGKFKLPTKNEFIPTNFEILPLEAAA----TPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAY 565 (990)
T ss_dssp CTTCCCCCCCTTCCCCCCCCCCCTTC----CSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf 74556999887788665004577788----89995654388716755168765788689999996897779999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999997660210002626798451853799991268997999999999985079998899999999999972155
Q 002792 478 LFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTN 557 (880)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~s~~l~~~l~~l~~~l~~~~~~~~~f~~~k~~~~~~~~~~~ 557 (880)
+++.++...+++..+.+.++|++++++++.+++.++++|++++++.+++++.+.+.+|.|++++|+.+|+.++..+++..
T Consensus 566 L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~ 645 (990)
T 3cww_A 566 LYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFR 645 (990)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987864489868748999976875999998421868999999999986589899999999999999988666
Q ss_pred C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH---HHHHHHHCC
Q ss_conf 6-915579999998534799999889987216999999999999986010258762379999999999---999855158
Q 002792 558 M-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHIS---NIFKSIFSV 633 (880)
Q Consensus 558 ~-~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~~v~Gdi~~~~~~~~~---~~~~~~l~~ 633 (880)
. +|...+...+..+++++.|...+..+.|++++.+++.+|+++++++.+++++|+||++.+++..++ ..+++.++.
T Consensus 646 ~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~ 725 (990)
T 3cww_A 646 AEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH 725 (990)
T ss_dssp GSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 24859999999999967899999999998852999999999999986411899997588999999999999999834677
Q ss_pred C-CCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCC
Q ss_conf 9-999222345406886999818998505898997839999996044569342899999999999748456788631014
Q 002792 634 Q-PLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQ 712 (880)
Q Consensus 634 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~lRek~g 712 (880)
. +.+.......+...++.+..+++.. ..+...++++.++++. +..+.++.+++.+|+++|++++|++|||++|
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~----~~~~~~~~~~l~ll~~il~~~lf~~LRek~~ 799 (990)
T 3cww_A 726 TKPLLPSQLAAYREVQLPDRGWFVYQQ--RNEVHNNSGIEIYYQT----DMQSTSENMFLELFAQIISEPAFNTLRTKEQ 799 (990)
T ss_dssp CEECCGGGCCCCCBBCCCTTEEEEEEE--ECSSCSSEEEEEEEEE----EECCHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCCHHHCCCCCEEECCCCCEEEEEE--CCCCCCCCEEEEEEEC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 788743331335448838998699970--6888888379999967----9999999999999999988899999871127
Q ss_pred CCEEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 30899821245378235999996899995789999999999999998079999999999999999709999968999999
Q 002792 713 LGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRF 792 (880)
Q Consensus 713 l~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~ 792 (880)
+||+++|+.....+..++.++++++ ++|+++.+.++.|++.+..++.++|++||+++|.++++++...+.++..+.+++
T Consensus 800 lgY~v~s~~~~~~g~~~~~~~vqs~-~dp~~~~~~i~~f~~~~~~l~~~~te~el~~~k~~li~~~~~~~~~~~~~~~~~ 878 (990)
T 3cww_A 800 LGYIVFSGPRRANGIQGLRFIIQSE-KPPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKY 878 (990)
T ss_dssp CCSEEEEEEEEETTEEEEEEEEEES-SCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHH
T ss_pred CCEEEEEEEEEECCEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 7579988878638978899999379-999999999999999999999856999999999999998517998899999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCH----------HH----HCCC
Q ss_conf 999852887878428899999179999999999986034899734599998458889201----------11----0257
Q 002792 793 WNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKE----------SE----KHSK 858 (880)
Q Consensus 793 ~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~~----------~~----~~~~ 858 (880)
|..+..+.+.++..++.++.|+++|++||++++++++.+++..++++.++|+|+...+.. +. ....
T Consensus 879 ~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (990)
T 3cww_A 879 WGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDINLSQAPALP 958 (990)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC----------------CCCCCCCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 99997489887767999999982899999999999860368877779999977787533332222220122210122478
Q ss_pred CCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 7531269588860473222689
Q 002792 859 SALVIKDLTAFKLSSEFYQSLC 880 (880)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~ 880 (880)
++..|+++.+||+..+.||..|
T Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~ 980 (990)
T 3cww_A 959 QPEVIQNMTAFKRGLPLFPLVK 980 (990)
T ss_dssp CCEECSCHHHHHHTSCBCCCCC
T ss_pred CCEEECCHHHHHHCCCCCCCCC
T ss_conf 8707168999952586534677
No 3
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=607.31 Aligned_cols=791 Identities=11% Similarity=0.051 Sum_probs=561.9
Q ss_pred HHHHH-HCCCCCCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHHCCCCCC--CCHHHHHH---------------HHHHHH
Q ss_conf 10401-1389543003899705998619-46658899999842212699--92028999---------------986798
Q 002792 3 MSYLS-KHGGSSNAYTETEHTCYHFEIK-REFLKGALMRFSQFFISPLM--KVEAMERE---------------VLAVDS 63 (880)
Q Consensus 3 ~~~l~-~~Gg~~na~T~~d~T~y~~~~~-~~~l~~~l~~l~~~~~~p~~--~~~~~~~e---------------~~~v~~ 63 (880)
.+++. ..||++||+|+.|+|+|++.++ .++++.+|++++|++.+|.| +++.|++| +++|.+
T Consensus 97 ~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~ 176 (995)
T 2fge_A 97 VELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFN 176 (995)
T ss_dssp HHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHH
T ss_pred HHHHHHCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 99997551887420677983599984488899999999999997587877998999876666404565543212231999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 98630388188999999841799999985555833310105316963899999999610475776799975998899999
Q 002792 64 EFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQS 143 (880)
Q Consensus 64 E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~ 143 (880)
|+++..++|.+++++.+.+.+|++|||+++++|++++|.+ ++.++|++||++||+|+||+|+|+||+|++++++
T Consensus 177 E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~------~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~ 250 (995)
T 2fge_A 177 EMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPN------LTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLR 250 (995)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGG------CCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
T ss_conf 9875048889999999999718999887779999676321------5899999999981884216999986999999999
Q ss_pred HHHHHCCCCC--CCCCCCCCCCCCCCCCCCCE----EEEE---EECCCCEEEEEEEECCCCH-HHHHCCHHHHHHHHHCC
Q ss_conf 9995444455--88888998764553334440----8999---9737621799997369960-56520709999997358
Q 002792 144 WVVELFANVR--KGPQIKPQFTVEGTIWKACK----LFRL---EAVKDVHILDLTWTLPCLH-QEYLKKSEDYLAHLLGH 213 (880)
Q Consensus 144 ~i~~~f~~i~--~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~l~~lL~~ 213 (880)
+|+++|+.|+ ++..+.+.. ..+++..+. .+.+ .+..++..+.++|+.|... +..+..++.+++++|++
T Consensus 251 ~i~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~ 328 (995)
T 2fge_A 251 VLSEYLDMFEASPSPNSSKIK--FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLG 328 (995)
T ss_dssp HHHHHHTTCCCCSHHHHSCCC--CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999998517754567776657--777888870588860567788766760899999768876798898999999999767
Q ss_pred CCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCEEEEEEE-ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999588999637543410112-2788788765301899999-9298559769999999999999999359935799999
Q 002792 214 EGRGSLHSFLKGRGWATSISAG-VGDEGMHRSSIAYIFVMSI-HLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 291 (880)
Q Consensus 214 ~~~~~L~~~Lr~~gl~~~~~~~-~~~~~~~~~~~~g~~~i~~-~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~~l~~~ 291 (880)
+..++|++.||++||+|+++++ .... . +.|.|.|.+ .+.+ ++++++++.++++|++++++|+++++++++
T Consensus 329 ~~~S~L~~~l~e~gl~~~~~~~~~~~~-~----~~~~f~i~~~~~~~---~~~~~~~~~i~~~l~~l~~~g~~~~el~~a 400 (995)
T 2fge_A 329 TPASPLRKILLESGLGEALVSSGLSDE-L----LQPQFGIGLKGVSE---ENVQKVEELIMDTLKKLAEEGFDNDAVEAS 400 (995)
T ss_dssp STTSHHHHHHHHTTSCSEECSCEEECS-S----SSCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCEEECCCCCC-C----CCEEEEEEEEECCH---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 998789999986388754265153566-6----67079999994888---789999999999999998739899999999
Q ss_pred HHHHCCCCCCCCC-CCHH--HHHHHHHHHC-CCCCCCCCEECCCCCCCCCH----H----HHHHHHHC-CCCC-CEEEEE
Q ss_conf 9853033224678-9916--8999999747-79996560003744767899----9----99999730-3944-557778
Q 002792 292 QDIGNMEFRFAEE-QPQD--DYAAELAGNL-LIYPAEHVIYGEYMYEVWDE----E----MIKHLLGF-FMPE-NMRIDV 357 (880)
Q Consensus 292 k~~~~~~~~~~~~-~~~~--~~~~~l~~~~-~~~~~~~~l~~~~~~~~vt~----~----~i~~~~~~-l~~~-~~~i~~ 357 (880)
++.+...+..... +.+. .++..++..+ .+.++...+.....++++++ + +|++++++ +.++ +..+++
T Consensus 401 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 480 (995)
T 2fge_A 401 MNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIE 480 (995)
T ss_dssp HHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999997741578896179999999998766999678764599999999875078607999999999815799458999
Q ss_pred EECCCCCC-CCCCCCCEECCCCCCCCCCHH----------HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82687788-887424301132223348978----------8986239999998788998997789995333257787876
Q 002792 358 VSKSFAKS-QDFHYEPWFGSRYTEEDISPS----------LMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLV 426 (880)
Q Consensus 358 ~~p~~~~~-~~~~~~~~~~~~y~~~~i~~~----------~~~~~~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~ 426 (880)
++|..... ...+.++++...+. ..+..+ .++.|+.... + ++...++|... +.+......
T Consensus 481 ~~p~~~~~~~~~~~e~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~--~----~~~~~~~p~~~-~~~i~~~~~-- 550 (995)
T 2fge_A 481 MQPDPEKATQEEVEEKNILEKVK-AAMTEEDLAELARATEELKLKQETPD--P----PEALRCVPSLN-LGDIPKEPT-- 550 (995)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTSCC--C----HHHHTTSCCCC-GGGSCSSCC--
T ss_pred EECCCCHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHCCCC--C----HHHHHHCCCCC-HHHCCCCCC--
T ss_conf 98380289999999999999998-73899999999999999999855899--8----67887447799-766676678--
Q ss_pred CCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-HHHHHHH-------HHCCCC
Q ss_conf 89999387517981589813674356414899999728886798999999999999999-9976602-------100026
Q 002792 427 TVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKD-ELNEIIY-------QASVAK 498 (880)
Q Consensus 427 ~~~~p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-------~~~~~g 498 (880)
..|......||++||++++. ..|.+.+.+.+ +.+..+.+..+++.+++.++.. ++....+ ....+|
T Consensus 551 --~~~~~~~~~nG~~v~~~~~~--~~~~v~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~gg 624 (995)
T 2fge_A 551 --YVPTEVGDINGVKVLRHDLF--TNDIIYTEVVF--DIGSLKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGG 624 (995)
T ss_dssp --CCCCEEEESSSSEEEEEECC--CSSEEEEEEEE--ECTTSCTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSE
T ss_pred --CCCCEEEECCCCEEEEEECC--CCCEEEEEEEE--ECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
T ss_conf --78843564089249998669--89869999996--1788997883437999999984899888899999999973176
Q ss_pred CEE-EE--EEEC-----CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHH
Q ss_conf 267-98--4518-----537999912689979999999999850799988-999999999999721556-9155799999
Q 002792 499 LET-SV--SIFS-----DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD-RFKVIKEDVVRTLKNTNM-KPLSHSSYLR 568 (880)
Q Consensus 499 ~~~-~~--~~~~-----~~~~~~~~g~s~~l~~~l~~l~~~l~~~~~~~~-~f~~~k~~~~~~~~~~~~-~p~~~a~~~~ 568 (880)
+++ ++ +... +++.+++++++++++.+++++.+.+.+|.|+++ +|+++|+.++..+++... ++...+...+
T Consensus 625 l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~ 704 (995)
T 2fge_A 625 ISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARM 704 (995)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 48411454667654556269999998364199999999999973888918999999999998788754426999999999
Q ss_pred HHHHCCCC-CC-------HHHHH--------HHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHHHHH
Q ss_conf 98534799-99-------98899--------8721699999999999998601025876237999-99999999998551
Q 002792 569 LQVLCQSF-YD-------VDEKL--------SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQ-EEAIHISNIFKSIF 631 (880)
Q Consensus 569 ~~~l~~~~-~~-------~~~~~--------~~l~~it~~dl~~f~~~~~~~~~~~~~v~Gdi~~-~~~~~~~~~~~~~l 631 (880)
..++.+.. +. ....+ +.++.+ .++|++|++++|++.+++++|+||++. +++.++++.+++.+
T Consensus 705 ~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l 783 (995)
T 2fge_A 705 DAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLL 783 (995)
T ss_dssp HHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTS
T ss_pred HHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 8737946899999735999999999998654189999-999999999972868848999948899988999999999852
Q ss_pred -CCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHC-HHHHHHHHH
Q ss_conf -589999222345406886999818998505898997839999996044569342899999999999748-456788631
Q 002792 632 -SVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-EPFFNQLRT 709 (880)
Q Consensus 632 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~l~~~lRe 709 (880)
+....+. .+ ...+.+.... ....+...+.+...+ .. ...+.++.+++.+++.+|+ ++||.+||+
T Consensus 784 ~p~~~~~~--~~----~~~~~~~~~~---~~~~~~~v~~~~~~~-~~----~~~~~~d~~al~vl~~iLg~~~L~~~iRe 849 (995)
T 2fge_A 784 PENPSGGL--VT----WDGRLPLRNE---AIVIPTQVNYVGKAG-NI----YSTGYELDGSAYVISKHISNTWLWDRVRV 849 (995)
T ss_dssp CSSCSSCS--CC----CCCCCCCCCE---EEECSCSSBEEEEEE-EG----GGGTCCCCTHHHHHHHHHHHTHHHHHTTT
T ss_pred CCCCCCCC--CC----CCCCCCCCCE---EEEECCCEEEEEEEC-CC----CCCCCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 75677777--76----5556776544---899557418999744-77----78898664999999999777702788631
Q ss_pred HCCCCEEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 01430899821245378235999996899995789999999999999998-07999999999999999970999996899
Q 002792 710 KEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYE 788 (880)
Q Consensus 710 k~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~-~~ite~el~~~k~~l~~~~~~~~~s~~~~ 788 (880)
+|++|++++++.. .|..+. |+...+ | .+.+.++.|...+..+. .++|++||+++|.++++++. .+.++...
T Consensus 850 -~g~aYg~~s~~~~-~G~~~~-~~s~~d---p-~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~-~~~~~~~~ 921 (995)
T 2fge_A 850 -SGGAYGGFCDFDS-HSGVFS-YLSYRD---P-NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVD-SYQLPDAK 921 (995)
T ss_dssp -TTCCSEEEEEEET-TTTEEE-EEEESB---S-CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHT-CCCCHHHH
T ss_pred -CCCCCCCCEEECC-CCCEEE-EEEECC---C-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCCCHHHH
T ss_conf -4877221317179-956899-999728---9-98999999999999996299899999999999987336-88898999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHH
Q ss_conf 99999998528878784288999991799999999999860348997345999984588892011
Q 002792 789 SNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKES 853 (880)
Q Consensus 789 ~~~~~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~~~ 853 (880)
+.+.|..+..+. ++++.+++++.|.+||++||++++++|+.+ ..+..++|+|+...+++.
T Consensus 922 ~~~~~~~~~~g~-~~~~~~~~~~~i~~vT~edv~~~a~~~~~~----~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 922 GYSSLLRHLLGV-TDEERQRKREEILTTSLKDFKDFAQAIDVV----RDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHH----HHHCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HCCCCEEEECCHHHHHHH
T ss_conf 999999997495-999999999999829999999999999865----336988998899999762
No 4
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=1.00 E-value=1 Score=564.86 Aligned_cols=813 Identities=12% Similarity=0.065 Sum_probs=536.9
Q ss_pred HHHH--CCCCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHCCCCCCCCHH--HHHH----------------------
Q ss_conf 4011--3895430038997059986194-66588999998422126999202--8999----------------------
Q 002792 5 YLSK--HGGSSNAYTETEHTCYHFEIKR-EFLKGALMRFSQFFISPLMKVEA--MERE---------------------- 57 (880)
Q Consensus 5 ~l~~--~Gg~~na~T~~d~T~y~~~~~~-~~l~~~l~~l~~~~~~p~~~~~~--~~~e---------------------- 57 (880)
.+.+ .||.+||+|+.|+|+|++.+++ ++++.+|++++|++.+|.|++++ |.+|
T Consensus 150 ~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~ 229 (1193)
T 3s5m_A 150 LLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQM 229 (1193)
T ss_dssp HHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEE
T ss_pred HHHHHCCCCEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCC
T ss_conf 99975448248768768759999994578889999999999985878763211022456665431110011012222222
Q ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf -------9867989863038818899999984179999998555583331010531696389999999961047577679
Q 002792 58 -------VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKL 130 (880)
Q Consensus 58 -------~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~l 130 (880)
+++|.+|+++..++|..++++.+.+.+|++|||+++++|++++|.+ ++.+++++||++||+|+||+|
T Consensus 230 ~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~------lt~edl~~F~~~~Y~P~Na~l 303 (1193)
T 3s5m_A 230 KDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITN------LTYEEFKEFYYKNYNPKKVKV 303 (1193)
T ss_dssp TTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTT------CCHHHHHHHHHHHSCTTTCEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCCCCEEE
T ss_conf 21004589999999997558999999999999857999998899999999851------899999999998609566699
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCEEEEEE-E---CCCCEEEEEEEECCCC----HH--
Q ss_conf 99759988999999995444455888889---9876455333444089999-7---3762179999736996----05--
Q 002792 131 VVIGGEPLDTLQSWVVELFANVRKGPQIK---PQFTVEGTIWKACKLFRLE-A---VKDVHILDLTWTLPCL----HQ-- 197 (880)
Q Consensus 131 vi~Gd~~~~~l~~~i~~~f~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~-~---~~~~~~l~i~~~~~~~----~~-- 197 (880)
+++||+|++++.++++++|+.|+.+..+. +... ..+++..++.+... + ...+..+.++|++|.. .+
T Consensus 304 ~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~ 382 (1193)
T 3s5m_A 304 FFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVE-YQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHN 382 (1193)
T ss_dssp EEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCCCCC-CCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC------
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 999268899999999998605887777766666667-7787788869999468999865138999998267544444532
Q ss_pred ---------------------------HHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCEE
Q ss_conf ---------------------------652070999999735899995889996375434101-1227887887653018
Q 002792 198 ---------------------------EYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS-AGVGDEGMHRSSIAYI 249 (880)
Q Consensus 198 ---------------------------~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~-~~~~~~~~~~~~~~g~ 249 (880)
..+..++.+++++|+++..++|++.|+++|++++++ ++.... . ..+.
T Consensus 383 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~-~----~~~~ 457 (1193)
T 3s5m_A 383 NNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDS-L----VQYI 457 (1193)
T ss_dssp ----------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECS-S----SSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCC-C----CCCE
T ss_conf 2344310001111123321112245686279999999999779998779999996698035466545655-6----7868
Q ss_pred EEEEEE-CCHHH-----HHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH--HHHHHHHC-C
Q ss_conf 999999-29855-----9769-9999999999999993599357999999853033224678991689--99999747-7
Q 002792 250 FVMSIH-LTDSG-----LEKI-FDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDY--AAELAGNL-L 319 (880)
Q Consensus 250 ~~i~~~-~~~~~-----~~~~-~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~--~~~l~~~~-~ 319 (880)
|.|.+. +.+.. .++. +++.+.|.++|++++++|++++++++++..+...++......+.+. +..+...| .
T Consensus 458 f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~ 537 (1193)
T 3s5m_A 458 FSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNY 537 (1193)
T ss_dssp EEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999657834314531024899999999999999987298999999999999998775137997099999998788780
Q ss_pred CCCCCCCEECCCCCCCCCH------HHHHHHHHC-CCCCCE-EEEEEECCCCCCCCCCCCCEE--CCCCCCCCCCH----
Q ss_conf 9996560003744767899------999999730-394455-777882687788887424301--13222334897----
Q 002792 320 IYPAEHVIYGEYMYEVWDE------EMIKHLLGF-FMPENM-RIDVVSKSFAKSQDFHYEPWF--GSRYTEEDISP---- 385 (880)
Q Consensus 320 ~~~~~~~l~~~~~~~~vt~------~~i~~~~~~-l~~~~~-~i~~~~p~~~~~~~~~~~~~~--~~~y~~~~i~~---- 385 (880)
..+|...+.+...++.+.. +++++++++ |..++. .++++.|... ...+.+.-. ...-....++.
T Consensus 538 ~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P~~~--~~~~~~~~e~~~L~~~~~~ls~~~~~ 615 (1193)
T 3s5m_A 538 NRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGDEN--YAQEQENLEKQELKKRIENFNEQEKE 615 (1193)
T ss_dssp TCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEEESS--HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCC--HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 7998998778999999999861084999999999833499638999972887--77899999999999998638999999
Q ss_pred ------HHHHHHCCCCC------CCCCCC---CCCCCCCCCCCC---CCCC---------------------------CC
Q ss_conf ------88986239999------998788---998997789995---3332---------------------------57
Q 002792 386 ------SLMELWRNPPE------IDVSLQ---LPSQNEFIPTDF---SIRA---------------------------ND 420 (880)
Q Consensus 386 ------~~~~~~~~~~~------~~~~~~---~p~~~~~ip~~~---~~~~---------------------------~~ 420 (880)
..+..|++..+ +.|.+. +|...+.+|... .... ..
T Consensus 616 ~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 695 (1193)
T 3s5m_A 616 QVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKY 695 (1193)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999873779754697478470987688766676301122222112210001111111111222110000000
Q ss_pred CCCCCC--C-----CCCCEE-----EECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 787876--8-----999938-----751798158981367435641489999972888679899999999999999999-
Q 002792 421 ISNDLV--T-----VTSPTC-----IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL- 487 (880)
Q Consensus 421 ~~~~~~--~-----~~~p~~-----~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 487 (880)
....+. . ...+.. ....+|+++|+++.++ .+.+|+.+.++.+..+.+...+..|++.+++...
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~T----NGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT 771 (1193)
T 3s5m_A 696 VLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMPT----TGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKT 771 (1193)
T ss_dssp TTC---------------------CCTTTTCEEEEEEECCC----TTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC----CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 01222222232222233222222111344983799998799----98699999987999997887569999999984799
Q ss_pred HHH-------HHHHCCCCCEEEEEEE--------------CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCH-HHHHHH
Q ss_conf 766-------0210002626798451--------------853799991268997999999999985079998-899999
Q 002792 488 NEI-------IYQASVAKLETSVSIF--------------SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSD-DRFKVI 545 (880)
Q Consensus 488 ~~~-------~~~~~~~g~~~~~~~~--------------~~~~~~~~~g~s~~l~~~l~~l~~~l~~~~~~~-~~f~~~ 545 (880)
... ......+|+++++++. ...+.+++.+++++++.+++++.++|.+|.|++ +++..+
T Consensus 772 ~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~l 851 (1193)
T 3s5m_A 772 NKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDI 851 (1193)
T ss_dssp SSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999999998588558876650365544556655656469999997442699999999999857999968999999
Q ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCC------C--HHHHHH--------HHCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99999997215569-155799999985347999------9--988998--------721699999999999998601025
Q 002792 546 KEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSFY------D--VDEKLS--------ILHGLSLADLMAFIPELRSQLYIE 608 (880)
Q Consensus 546 k~~~~~~~~~~~~~-p~~~a~~~~~~~l~~~~~------~--~~~~~~--------~l~~it~~dl~~f~~~~~~~~~~~ 608 (880)
..+.+..+.+...+ ++..|..++...+.+..+ + ....+. .++.+ .++|++++++++++.++.
T Consensus 852 l~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~ 930 (1193)
T 3s5m_A 852 LKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLM 930 (1193)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCEE
T ss_conf 9999998873142466899999999864750223442078579999999998667559999-999999999981878839
Q ss_pred EEEECCCCH-HHHHHHHHHHHHHHCC----CCC----------CC--CCCC----CCEEEECCCCCEEEEEEECCCCCCC
Q ss_conf 876237999-9999999999855158----999----------92--2234----5406886999818998505898997
Q 002792 609 GLCHGNLSQ-EEAIHISNIFKSIFSV----QPL----------PI--EMRH----QECVICLPSGANLVRNVSVKNKCET 667 (880)
Q Consensus 609 ~~v~Gdi~~-~~~~~~~~~~~~~l~~----~~~----------~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (880)
+.++|+.+. +++...++.+++.++. ... +. ..+. .......+...+.. ...+..+
T Consensus 931 vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~p~~v 1006 (1193)
T 3s5m_A 931 VSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEF----FVLPTFV 1006 (1193)
T ss_dssp EEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEE----EECCCSS
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE----EECCCCC
T ss_conf 999947656999999999999751210255664322222334454433222222332223555555506----7427864
Q ss_pred CEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHC-HHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 839999996044569342899999999999748-4567886310143089982124537823599999689999578999
Q 002792 668 NSVIELYFQIEQEKGMELTRLKALIDLFDEILE-EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQE 746 (880)
Q Consensus 668 ~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~ 746 (880)
+.+...+. . .....++..++.+++.+|+ ++||++||||+| +|+++|++. .. +.+.|+...+ -.+.+..+
T Consensus 1007 ~yv~~~~~-~----~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgG-AYg~~s~~~-~~--G~f~~~syrd-p~~~~tl~ 1076 (1193)
T 3s5m_A 1007 NSVSMSGI-L----FKPGEYLDPSFTVIVAALKNSYLWDTVRGLNG-AYGVFADIE-YD--GSVVFLSARD-PNLEKTLA 1076 (1193)
T ss_dssp BEEEEEEE-C----SCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTC-CSEEEEEEC-TT--SEEEEEEESB-SCSHHHHH
T ss_pred EEEEEEEC-C----CCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCC-EEEEEEECC-CC--CCEEEEEEEC-CCHHHHHH
T ss_conf 69999724-7----77798760999999999782477999976187-268877616-78--8679999807-98799999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999980799999999999999997099999689999999998528878784288999991799999999999
Q 002792 747 RIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYK 826 (880)
Q Consensus 747 ~i~~~~~~~~~~~~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~~~ 826 (880)
.+.+.+..+....+++|++||+++|.++++++. .+.++...+.+.+.....| .+.++.+++++.|.+||++||+++|+
T Consensus 1077 ~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~~G-l~~d~~~~~~~~I~aVT~edv~~vA~ 1154 (1193)
T 3s5m_A 1077 TFRESAKGLRKMADTMTENDLLRYIINTIGTID-KPRRGIELSKLSFLRLISN-ESEQDRVEFRKRIMNTKKEDFYKFAD 1154 (1193)
T ss_dssp HHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS-CCCCTHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999963589899999999999983666-6689699999999999819-59999999999998099999999999
Q ss_pred HHCCCCCCCC-CEEEEEEECCCCCCCHHHH
Q ss_conf 8603489973-4599998458889201110
Q 002792 827 TYLQQWSPKC-RRLAVRVWGCNTNIKESEK 855 (880)
Q Consensus 827 ~~l~~~~~~~-~~~~~~v~g~~~~~~~~~~ 855 (880)
+|+.+- . ....++|+|+...+.+.-.
T Consensus 1155 ~~~~~l---~~~~~~~vvvG~~~~i~~~l~ 1181 (1193)
T 3s5m_A 1155 LLESKV---NEFEKNIVIITTKEKANEYIA 1181 (1193)
T ss_dssp HHHHTH---HHHTTEEEEEECHHHHHHHHH
T ss_pred HHHHHH---CCCCCEEEEECCHHHHHHHHH
T ss_conf 985132---136736999858888535776
No 5
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=352.12 Aligned_cols=338 Identities=18% Similarity=0.153 Sum_probs=282.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 11040113895430038997059986194665889999984221269992028999986798986303881889999998
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.++++.+||++||+|+.|+|+|++++++++++.+|++++|++ +|.|++++|++|++++.+|+++..++|..++.+.+.
T Consensus 64 ~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~ 142 (406)
T 3eoq_A 64 VNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWAR 142 (406)
T ss_dssp HHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEECCCEEEEEEEECHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998488735264477489999955788999999999985-689998999999999999998742997899999999
Q ss_pred HHCCCCCCCCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 41799999985555833310105316963899999999610475776799975998899999999544445588888998
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ 161 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~i~~~~~~~~~ 161 (880)
..+|++|||+++.+|+.++|.+ ++.++|++||++||+|+||+|+|+||+++++++++++++|+.|+.+..+.+
T Consensus 143 ~~~~~~~p~~~~~~G~~~~i~~------~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~- 215 (406)
T 3eoq_A 143 ARFFQGHPLGNSVLGTRESITA------LTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA- 215 (406)
T ss_dssp HHHHTTCGGGCCSSCCHHHHHH------CCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC-
T ss_pred HHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC-
T ss_conf 9843899998888689999963------899999999998488667799998489999999999998357887888988-
Q ss_pred CCCCCCCCCCCEEEEEEECC-CCEEEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 76455333444089999737-62179999736996056520709999997358999958899963754341011227887
Q 002792 162 FTVEGTIWKACKLFRLEAVK-DVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEG 240 (880)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr~~gl~~~~~~~~~~~~ 240 (880)
. + +....++.+...... .+..+.++|+.+...+ .+..++.+++.+||++..++|++.||++||+|+++++....
T Consensus 216 ~--~-~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~-~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~- 290 (406)
T 3eoq_A 216 Y--P-PLTPAFGVEERPYEKARALYLVALFPGVAYQE-EARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEA- 290 (406)
T ss_dssp C--C-CCCCCCEEEEEECTTCSSEEEEEEEECCCTTC-TTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEEC-
T ss_pred C--C-CCCCCCCEEEEECCCCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCC-
T ss_conf 8--9-87888846998368735058999944799888-11999999999967996248899999759746999874056-
Q ss_pred CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC-
Q ss_conf 8876530189999992985597699999999999999993599357999999853033224678991689999997477-
Q 002792 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL- 319 (880)
Q Consensus 241 ~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~- 319 (880)
. +.|.|.+++.+.+ ++.+++++.+.+++++++++|++++|++++|+.+..++....+ ++...+..++..+.
T Consensus 291 ---~-~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e-~~~~~~~~~~~~~~~ 362 (406)
T 3eoq_A 291 ---D-RAGTFHAYVQADP---ARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGE-TPMQRLFHLGMEYLY 362 (406)
T ss_dssp ---S-SCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHH
T ss_pred ---C-CCEEEEEEEEECC---CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf ---7-8637999998473---3299999999999999985799999999999999977877347-899999999999996
Q ss_pred CCCCCCCEECCCCCCCCCHHHHHHHHHC-CCCCCEEEEEEECC
Q ss_conf 9996560003744767899999999730-39445577788268
Q 002792 320 IYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKS 361 (880)
Q Consensus 320 ~~~~~~~l~~~~~~~~vt~~~i~~~~~~-l~~~~~~i~~~~p~ 361 (880)
..++..+......+++||+++|++++++ +.++++ ++++||.
T Consensus 363 ~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~ 404 (406)
T 3eoq_A 363 TGRYLSLEEVKARVQRVTSREVNALLERGFLEKGL-YYLVLPH 404 (406)
T ss_dssp HSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECC
T ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCE-EEEECCC
T ss_conf 69989999999999828999999999986585667-9997898
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=1.00 E-value=1 Score=351.56 Aligned_cols=346 Identities=11% Similarity=0.098 Sum_probs=289.7
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHH
Q ss_conf 11040113895430038997059986194665889999984221269992028999986798986-30388188999999
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFN-QALQNDACRLQQLQ 80 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~-~~~~~~~~~~~~~~ 80 (880)
+.++++++||.+||+|+.|.|+|++++++++++.+|+++++++.+|.|+++++++|++++.+|++ +..++|..++.+.+
T Consensus 69 l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~ 148 (445)
T 3ami_A 69 FSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEAL 148 (445)
T ss_dssp HHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999982986330147985799997888999999999999961899998999999999999998544588479999999
Q ss_pred HHHCCCCCCCCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 84179999998555583331010531696389999999961047577679997599889999999954444558888899
Q 002792 81 CHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKP 160 (880)
Q Consensus 81 ~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~i~~~~~~~~ 160 (880)
...+|++|||+++++|+.++|.+ ++.++|++||++||+|+||+|+|+||+++++++++++++|+.||++..+.+
T Consensus 149 ~~~~~~~~p~~~~~~G~~e~l~~------it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~ 222 (445)
T 3ami_A 149 MAASYVAHPYRVPVIGWMNDIQN------MTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPAR 222 (445)
T ss_dssp HHHHCSSSGGGSCTTCCHHHHHH------CCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCC
T ss_pred HHHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99860589877998889999865------799999999997188556699998289999999999998437988889987
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCC---CHHHHHCCHHHHHHHHHCCCCCCCHHHHHH-HCCCCCCCCCCC
Q ss_conf 8764553334440899997376217999973699---605652070999999735899995889996-375434101122
Q 002792 161 QFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPC---LHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGV 236 (880)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~---~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr-~~gl~~~~~~~~ 236 (880)
... ..|.....+.+.+.....+..+.++|+.|. ..+..+..++.+++.+||++..++|++.|| ++|++|+++++.
T Consensus 223 ~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~ 301 (445)
T 3ami_A 223 KQQ-GEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGY 301 (445)
T ss_dssp CCC-CCCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEEC
T ss_pred CCC-CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 778-8988778658998568776379999976872125688329999999999807723578999852588579998501
Q ss_pred CCCCCCCCCC-CEEEEEEEECCHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 7887887653-0189999992985597-6999999999999999935993579999998530332246789916899999
Q 002792 237 GDEGMHRSSI-AYIFVMSIHLTDSGLE-KIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAEL 314 (880)
Q Consensus 237 ~~~~~~~~~~-~g~~~i~~~~~~~~~~-~~~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l 314 (880)
..... + .|.|.|++.+.+ + +++++++.+.++++++++.|+++++++++|+.+..++....+ ++..++..+
T Consensus 302 ~~~~~----~~~g~~~i~~~~~~---~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~l 373 (445)
T 3ami_A 302 DSLSR----GQQGLFILEGVPSK---GVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQD-SLMGQATQI 373 (445)
T ss_dssp CCCCS----SCCEEEEEEEEECT---TCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT-SHHHHHHHH
T ss_pred CCCCC----CCCCEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHH
T ss_conf 23345----78975999999799---99999999999999999985398999999999999999999744-789999999
Q ss_pred HHHCC-CCCCCCCEECCCCCCCCCHHHHHHHHHC-CCCCCEEEEEEECCC
Q ss_conf 97477-9996560003744767899999999730-394455777882687
Q 002792 315 AGNLL-IYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKSF 362 (880)
Q Consensus 315 ~~~~~-~~~~~~~l~~~~~~~~vt~~~i~~~~~~-l~~~~~~i~~~~p~~ 362 (880)
+..+. +.++..+......++++|+++|++++++ |.++++.+++++|..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 374 GGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 99998179867899999999749999999999997185773999975676
No 7
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=1.00 E-value=1 Score=335.96 Aligned_cols=339 Identities=14% Similarity=0.118 Sum_probs=250.6
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 11040113895430038997059986194665889999984221269992028999986798986303881889999998
Q 002792 2 KMSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQC 81 (880)
Q Consensus 2 l~~~l~~~Gg~~na~T~~d~T~y~~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~e~~~v~~E~~~~~~~~~~~~~~~~~ 81 (880)
+.+.++.+||.+||+|+.|.|+|++++++++++.+|+++++++.+|.|+++++++|++++.+|+++..++|..++.+.+.
T Consensus 64 ~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~ 143 (421)
T 3hdi_A 64 IAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLS 143 (421)
T ss_dssp HHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999984881202435656999999648779999999999986899998999999999999998756888899999999
Q ss_pred HHCCCCCCCCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 41799999985555833310105316963899999999610475776799975998899999999544445588888998
Q 002792 82 HTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ 161 (880)
Q Consensus 82 ~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~l~~~i~~~f~~i~~~~~~~~~ 161 (880)
..+|++|||+++.+|+.++|.+ ++.++|++||++||+|+||+|+|+||++ ++++++++++|+.||.+..+. .
T Consensus 144 ~~~~~~~p~~~~~~G~~~~l~~------it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~-~ 215 (421)
T 3hdi_A 144 SATYGKHSLGYPILGTVETLNS------FNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNY-Q 215 (421)
T ss_dssp HHHHTTSGGGSCTTCCHHHHHH------CCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCC-C
T ss_pred HHHCCCCCCCCCCCCCHHHHHH------CCHHHHHHHHHHHCCCCCEEEEEEECCC-HHHHHHHHHHHCCCCCCCCCC-C
T ss_conf 9824899999988689899975------9999999999984484667999980887-999999999836888888887-8
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHH-HCCCCCCCCCCCCCCC
Q ss_conf 764553334440899997376217999973699605652070999999735899995889996-3754341011227887
Q 002792 162 FTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEG 240 (880)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lL~~~~~~~L~~~Lr-~~gl~~~~~~~~~~~~ 240 (880)
. ..|... +..+...+...+..+.++|+.+...+ .+..++.+++.+||++..++|++.|| ++|++|+++++....
T Consensus 216 ~--~~~~~~-~~~~~~~~~~~q~~v~~~~~~~~~~~-~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~- 290 (421)
T 3hdi_A 216 G--EKPMFL-PNRIVRKKETEQAHLCLGYPGLPIGD-KDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSF- 290 (421)
T ss_dssp C--CCCCCC-CCEEEEECCCSEEEEEEEEECCCTTC-TTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEEC-
T ss_pred C--CCCCCC-CCEEEECCCCCCEEEEEEEECCCCCC-CHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEECCC-
T ss_conf 8--988778-85388607888458999976699898-169999999999679963279999987359779999751466-
Q ss_pred CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC-C
Q ss_conf 887653018999999298559769999999999999999359935799999985303322467899168999999747-7
Q 002792 241 MHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL-L 319 (880)
Q Consensus 241 ~~~~~~~g~~~i~~~~~~~~~~~~~~v~~~i~~~l~~l~~~g~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 319 (880)
. +.|.|.+++.+.+ ++.+++++.+.++++++++.|++++|++++|..+..++....+ ++..++..++... .
T Consensus 291 ---~-~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e-~~~~~~~~~~~~~~~ 362 (421)
T 3hdi_A 291 ---R-DSGMLTIYAGTGH---DQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLE-STNSRMSRNGKNELL 362 (421)
T ss_dssp ---S-SCEEEEEEEEEEG---GGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred ---C-CCCEEEEEEEECH---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
T ss_conf ---7-8836999998088---7899999999999999985799999999999999999987068-999999999999996
Q ss_pred CCCCCCCEECCCCCCCCCHHHHHHHHHC-CCCCCEEEEEEECCC
Q ss_conf 9996560003744767899999999730-394455777882687
Q 002792 320 IYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKSF 362 (880)
Q Consensus 320 ~~~~~~~l~~~~~~~~vt~~~i~~~~~~-l~~~~~~i~~~~p~~ 362 (880)
...+.........++++|+++|++++++ + ++++.+++++|..
T Consensus 363 ~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 363 LKKHRSLDEMIEQINAVQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp TSCCCCHHHHHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHHHHC-CCCCEEEEECCHH
T ss_conf 699899999999997089999999999970-5275899987500
No 8
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=1.00 E-value=1 Score=329.05 Aligned_cols=396 Identities=10% Similarity=0.003 Sum_probs=172.8
Q ss_pred EEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCCEEEEEEEC
Q ss_conf 875179815898136743564148999997288867989999999999999999976-----602100026267984518
Q 002792 433 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-----IIYQASVAKLETSVSIFS 507 (880)
Q Consensus 433 ~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~ 507 (880)
...+.||++|++.+.+ .|.+.+.+.+..+....+....+++.++..++..+... ........|..++...+.
T Consensus 16 ~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~ 92 (446)
T 1pp9_A 16 VSQLDNGLRVASEQSS---QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTR 92 (446)
T ss_dssp EEECTTCCEEEEEECS---CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECS
T ss_pred EEECCCCCEEEEEECC---CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999999889999679---9879999997530488999987389999997517899999899999999709979999768
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CCCC--HHHHHH
Q ss_conf 5379999126899799999999998507999889999999999997215569155799999985347-9999--988998
Q 002792 508 DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD--VDEKLS 584 (880)
Q Consensus 508 ~~~~~~~~g~s~~l~~~l~~l~~~l~~~~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~--~~~~~~ 584 (880)
+.+.+++++++++++.+++++.+.+.+|.|+++.|+++|+.+.++++...++|...+.+.+...+++ ++++ ..+..+
T Consensus 93 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 172 (446)
T 1pp9_A 93 EHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSE 172 (446)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHH
T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 76999999257889999999999985799998999999999999998634288899999999986289999999858889
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC
Q ss_conf 72169999999999999860102587623799999999999998551589999222345406886999818998505898
Q 002792 585 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNK 664 (880)
Q Consensus 585 ~l~~it~~dl~~f~~~~~~~~~~~~~v~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (880)
.|+.++.+++++||+++|++.|+.++|+||++.+++.++++++++.++..+.+. ..+..... ...+.... . .. +
T Consensus 173 ~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~-~~~~~~~~-~~~~~~~~-~-~~--~ 246 (446)
T 1pp9_A 173 NVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDED-AVPTLSPC-RFTGSQIC-H-RE--D 246 (446)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSS-CCCCCCCC-CCCCEEEE-E-EE--T
T ss_pred HHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCC-CCCCCEEE-E-EC--C
T ss_conf 997479999999999446788779999808999999999999823688888877-66667788-87896589-7-05--8
Q ss_pred CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHH-------------CHHHHHHHHHHCCCCEEEEEEEEEECCEEEEE
Q ss_conf 99783999999604456934289999999999974-------------84567886310143089982124537823599
Q 002792 665 CETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL-------------EEPFFNQLRTKEQLGYVVECSPRVTYRVFGFC 731 (880)
Q Consensus 665 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l-------------~s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~ 731 (880)
...++.+.+.+.. ...+.++..++.+++.+| +|+|+++||+ +|++|+++++.....+.+.+.
T Consensus 247 ~~~~~~v~~~~~~----~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~~~ 321 (446)
T 1pp9_A 247 GLPLAHVAIAVEG----PGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGLLG 321 (446)
T ss_dssp TSSSEEEEEEEEE----CCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEEEE
T ss_pred CCCCEEEEEEEEC----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH-CCCEEEEEEECCCCCCCEEEE
T ss_conf 8540589999734----89999509999999998199864578889877799999986-498389988505677876999
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99968999957899999999999999980799999999999999997099999689999999998528878784288999
Q 002792 732 FCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAE 811 (880)
Q Consensus 732 ~~i~s~~~~~~~~~~~i~~~~~~~~~~~~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~ 811 (880)
+++.. +|+++.+.+..+.+++..+..+++++||+++|+.+++++....++....+..+...+...+...+ .+++.+
T Consensus 322 i~~~~---~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 397 (446)
T 1pp9_A 322 AHFVC---DHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP-LAEWES 397 (446)
T ss_dssp EEEEE---CTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC-HHHHHH
T ss_pred EEEEE---CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-HHHHHH
T ss_conf 99997---78779999999999999986469999999999999999988058899999999999997389899-999999
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 9917999999999998603489973459999845888920
Q 002792 812 DLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 851 (880)
Q Consensus 812 ~i~~it~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~ 851 (880)
.|++||++||++++++|+.++ ...++++|+...++
T Consensus 398 ~i~~vt~edv~~~a~~~~~~~-----~~~~~~~g~~~~~~ 432 (446)
T 1pp9_A 398 RIAEVDARVVREVCSKYFYDQ-----CPAVAGFGPIEQLP 432 (446)
T ss_dssp HHHTCCHHHHHHHHHHHTTTC-----CCEEEEEESCTTSC
T ss_pred HHHCCCHHHHHHHHHHHCCCC-----CCEEEEECCCCCCC
T ss_conf 997399999999999973888-----86799988744475
No 9
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=1.00 E-value=1 Score=320.69 Aligned_cols=401 Identities=10% Similarity=0.044 Sum_probs=281.4
Q ss_pred CEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHCCCCCEEEEEE
Q ss_conf 9387517981589813674356414899999728886798999999999999999997-----66021000262679845
Q 002792 431 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSI 505 (880)
Q Consensus 431 p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~g~~~~~~~ 505 (880)
.....+.||++|++.+++. .+.+.+.+.+..+....+....+++.++..++..+.. +........|.+++...
T Consensus 7 ~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (443)
T 1hr6_B 7 TRTSKLPNGLTIATEYIPN--TSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYT 84 (443)
T ss_dssp CEEEECTTSCEEEEEECSS--CSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEECCCCCEEEEEECCC--CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 4589989988899997799--98799999985113789999876899999875058889998999999997599678998
Q ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CCCC--HHHH
Q ss_conf 185379999126899799999999998507999889999999999997215569155799999985347-9999--9889
Q 002792 506 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD--VDEK 582 (880)
Q Consensus 506 ~~~~~~~~~~g~s~~l~~~l~~l~~~l~~~~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~--~~~~ 582 (880)
+.+.+.+.+++++++++.+++++.+.+.+|.|+++.|+++|+.+.++++...++|...+.+.+...+++ +++. ..+.
T Consensus 85 ~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 164 (443)
T 1hr6_B 85 SRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGP 164 (443)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 78768999996477799999999999857899999999999999999984127848899999999734799898888389
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC--EEEECCCCCEEEEEEE
Q ss_conf 98721699999999999998601025876237999999999999985515899992223454--0688699981899850
Q 002792 583 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQE--CVICLPSGANLVRNVS 660 (880)
Q Consensus 583 ~~~l~~it~~dl~~f~~~~~~~~~~~~~v~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 660 (880)
.+.|+.++.+++++||+++|++.|++++|+||++.+++.++++++++.++....+. ..+.. .... ..+.... ..
T Consensus 165 ~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~~ 240 (443)
T 1hr6_B 165 IKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPV-PLGSPRGPLPV-FCRGERF--IK 240 (443)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCC-CTTSCCSSCCC-CCCEEEE--EE
T ss_pred HHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCC-CCCCEEE--EC
T ss_conf 99996489999999999447677779999859999999999999835799888887-76545578888-7787687--42
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHH-------------CHHHHHHHHHHCCCCEEEEEEEEEECCE
Q ss_conf 589899783999999604456934289999999999974-------------8456788631014308998212453782
Q 002792 661 VKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL-------------EEPFFNQLRTKEQLGYVVECSPRVTYRV 727 (880)
Q Consensus 661 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l-------------~s~l~~~lRek~gl~Y~v~~~~~~~~~~ 727 (880)
.+...++.+.+.+.. ...+.++..++.+++.+| +|+|+++|||++|++|+++++.....+.
T Consensus 241 --~~~~~~~~v~~~~~~----~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~ 314 (443)
T 1hr6_B 241 --ENTLPTTHIAIALEG----VSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADS 314 (443)
T ss_dssp --CTTCSEEEEEEEEEC----CCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSC
T ss_pred --CCCCCCEEEEEEEEC----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf --688550589999705----99999418999999998089865578888866689999998709748998652477776
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 35999996899995789999999999999998-07999999999999999970999996899999999985-28878784
Q 002792 728 FGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQIT-DKRYMFDQ 805 (880)
Q Consensus 728 ~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~~-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~-~~~~~~~~ 805 (880)
+.+.+++.+. ..|+++.+.+..+.+++..+. .+++++||+++|+.+++++....++....+..+...+. .+. ..+
T Consensus 315 g~~~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~- 391 (443)
T 1hr6_B 315 GLWGMYIVTD-SNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGK-RLS- 391 (443)
T ss_dssp EEEEEEEEEE-TTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSS-CCC-
T ss_pred EEEEEEEEEC-CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-CCC-
T ss_conf 2799999826-8766799999999999999753898999999999999999997268999999999999985488-689-
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 2889999917999999999998603489973459999845888920
Q 002792 806 SQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 851 (880)
Q Consensus 806 ~~~~~~~i~~it~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~ 851 (880)
.+++.+.|++||++||++++++|+.+ ....++++|+...++
T Consensus 392 ~~~~~~~i~~vt~~dv~~~a~~~l~~-----~~~~~~v~g~~~~~~ 432 (443)
T 1hr6_B 392 PEEVFEQVDKITKDDIIMWANYRLQN-----KPVSMVALGNTSTVP 432 (443)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHSSS-----CCEEEEEEECGGGCC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCC-----CCCEEEEECCCCCCC
T ss_conf 99999999728999999999998266-----886799988733375
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=1.00 E-value=1 Score=315.42 Aligned_cols=397 Identities=11% Similarity=0.045 Sum_probs=298.6
Q ss_pred CEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH----H-----HHHHHCCCCCEE
Q ss_conf 9387517981589813674356414899999728886798999999999999999997----6-----602100026267
Q 002792 431 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN----E-----IIYQASVAKLET 501 (880)
Q Consensus 431 p~~~~~~~g~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~-----~~~~~~~~g~~~ 501 (880)
...+.+.||++||+.+++. .|++.+.+.+..|....+....+++.++..++..+.. . ........|.++
T Consensus 4 ~~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 4 IEHWTAPSGAQVYYVENRT--LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CEEEECTTSCEEEEEECCS--SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CEEEECCCCCEEEEEECCC--CCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEE
T ss_conf 3799879996899998799--97799999993577567776421999999999701587766899999999999838789
Q ss_pred EEEEECCEEEEEEECCCCCH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CCCC
Q ss_conf 98451853799991268997--99999999998507999889999999999997215569155799999985347-9999
Q 002792 502 SVSIFSDKLELKVYGFNDKL--PVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD 578 (880)
Q Consensus 502 ~~~~~~~~~~~~~~g~s~~l--~~~l~~l~~~l~~~~~~~~~f~~~k~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~ 578 (880)
+...+.+++.++++++++++ +.+++++.+.+.+|.|+++.|+++|+.+.+++++..++|...+.+.+...+++ ++|.
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 86437875899999855333715799999999868999989999999999999997654989999999998527999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 98899872169999999999999860102587623799999999999998551589999222345406886999818998
Q 002792 579 VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRN 658 (880)
Q Consensus 579 ~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~~v~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (880)
.....++|+.++.+++++||+++|.+.+++++|+||++.+++.++++++++.++....+. ..+. ...+.+..+.
T Consensus 162 ~~~~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~-~~~~---~~~~~~~~~~-- 235 (424)
T 3amj_B 162 HVSSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLP-PLPD---PAMPRATVER-- 235 (424)
T ss_dssp CCCCHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCC-CCCC---CCCCCCEEEE--
T ss_pred CCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC-CCCC---CCCCCCCEEE--
T ss_conf 889999997289999999999862778659999948999999999999970688888788-8889---8888881698--
Q ss_pred EECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHH-----HCHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 5058989978399999960445693428999999999997-----48456788631014308998212453782359999
Q 002792 659 VSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEI-----LEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFC 733 (880)
Q Consensus 659 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~-----l~s~l~~~lRek~gl~Y~v~~~~~~~~~~~~~~~~ 733 (880)
... +. .+..+.+.++. ...+.++..++.+++.+ ++|+|+++||+++|++|+++++.....+.+.+.++
T Consensus 236 ~~~--~~-~~~~v~~~~~~----~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~ 308 (424)
T 3amj_B 236 IAN--PA-TQAHIAIGMPT----LKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIG 308 (424)
T ss_dssp EEC--SS-SEEEEEEEEEE----EBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEE
T ss_pred EEC--CC-CCCEEEEECCC----CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEEEECCCCCCEEEEEE
T ss_conf 417--99-76489962468----898993367999999996799732332899997478278852460258886469999
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 96899995789999999999999998-07999999999999999970999996899999999985288787842889999
Q 002792 734 IQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAED 812 (880)
Q Consensus 734 i~s~~~~~~~~~~~i~~~~~~~~~~~-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 812 (880)
+++. |+.+.+.+..+...+..+. .+++++||+++|+.+++++....++....+..++..... +.+++..+++.+.
T Consensus 309 ~~~~---~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 384 (424)
T 3amj_B 309 FETR---AEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYY-GLPLDYLDHYTER 384 (424)
T ss_dssp EEEE---STTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHT-TCCTTTTTSHHHH
T ss_pred EEEC---CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 9837---13199999999999999985699999999999999864567337999999999999980-9982589999999
Q ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 917999999999998603489973459999845888920
Q 002792 813 LKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 851 (880)
Q Consensus 813 i~~it~edi~~~~~~~l~~~~~~~~~~~~~v~g~~~~~~ 851 (880)
|++||++||++++++|+.++ .+.++++|+..+..
T Consensus 385 i~~vt~~dv~~~a~~~l~~~-----~~~~~~~~~~~~~~ 418 (424)
T 3amj_B 385 VQAVTVEQVREAFARHVKRE-----NLITVVVGGKASLE 418 (424)
T ss_dssp HHTCCHHHHHHHHHHHCCGG-----GCEEEEEECC----
T ss_pred HHCCCHHHHHHHHHHHCCCC-----CEEEEEECCHHHHH
T ss_conf 97199999999999855914-----45999987804542
Done!