Your job contains 1 sequence.
>002793
MKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSE
AYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRV
VSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKM
VVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQIN
AILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALS
IERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSL
NPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGE
GWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVL
SGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL
DTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALA
FPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYD
KDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKK
KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRS
FKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAKRQCSGSSSNSGVDP
GVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002793
(880 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2203231 - symbol:AT1G77680 species:3702 "Arabi... 2261 1.9e-234 1
RGD|1560168 - symbol:Dis3l2 "DIS3 mitotic control homolog... 993 1.5e-112 3
MGI|MGI:2442555 - symbol:Dis3l2 "DIS3 mitotic control hom... 991 3.1e-112 3
ZFIN|ZDB-GENE-070705-171 - symbol:si:ch211-273k1.4 "si:ch... 967 1.9e-110 3
UNIPROTKB|Q8IYB7 - symbol:DIS3L2 "DIS3-like exonuclease 2... 998 3.9e-110 2
UNIPROTKB|E1C372 - symbol:DIS3L2 "Uncharacterized protein... 1007 8.0e-110 2
UNIPROTKB|E1B7R0 - symbol:DIS3L2 "Uncharacterized protein... 996 2.1e-100 1
UNIPROTKB|E2QZ40 - symbol:DIS3L2 "Uncharacterized protein... 990 9.1e-100 1
UNIPROTKB|F6XKS7 - symbol:DIS3L2 "Uncharacterized protein... 990 9.1e-100 1
POMBASE|SPAC2C4.07c - symbol:SPAC2C4.07c "ribonuclease II... 943 7.6e-99 2
DICTYBASE|DDB_G0278757 - symbol:DDB_G0278757 "DIS3-like e... 903 2.5e-97 2
WB|WBGene00018612 - symbol:F48E8.6 species:6239 "Caenorha... 762 1.6e-90 4
UNIPROTKB|H7C440 - symbol:DIS3L2 "DIS3-like exonuclease 2... 848 4.4e-88 2
UNIPROTKB|A0JN80 - symbol:DIS3L "DIS3-like exonuclease 1"... 730 1.4e-79 3
UNIPROTKB|F1MEA6 - symbol:DIS3L "DIS3-like exonuclease 1"... 730 1.4e-79 3
UNIPROTKB|Q8TF46 - symbol:DIS3L "DIS3-like exonuclease 1"... 713 6.0e-77 3
UNIPROTKB|Q5R5N8 - symbol:DIS3L "DIS3-like exonuclease 1"... 706 3.4e-76 3
RGD|1308959 - symbol:Dis3l "DIS3 mitotic control homolog ... 707 2.9e-75 3
UNIPROTKB|Q0P4R5 - symbol:dis3l "DIS3-like exonuclease 1"... 699 3.3e-75 3
MGI|MGI:2143272 - symbol:Dis3l "DIS3 mitotic control homo... 704 1.1e-74 3
UNIPROTKB|F1SJJ9 - symbol:DIS3L "Uncharacterized protein"... 709 2.9e-73 2
UNIPROTKB|F1NKN5 - symbol:LOC100857630 "Uncharacterized p... 686 5.6e-73 3
UNIPROTKB|I3LEH1 - symbol:DIS3L "Uncharacterized protein"... 706 6.9e-73 2
UNIPROTKB|Q6GN11 - symbol:dis3l "DIS3-like exonuclease 1"... 676 1.3e-72 3
DICTYBASE|DDB_G0268186 - symbol:DDB_G0268186 species:4468... 711 1.2e-71 3
FB|FBgn0035111 - symbol:CG16940 species:7227 "Drosophila ... 721 5.8e-71 1
ZFIN|ZDB-GENE-070209-95 - symbol:dis3l "DIS3 mitotic cont... 660 2.2e-70 3
UNIPROTKB|G3V1J5 - symbol:DIS3 "Exosome complex exonuclea... 416 7.5e-67 3
UNIPROTKB|Q9Y2L1 - symbol:DIS3 "Exosome complex exonuclea... 416 3.6e-66 3
UNIPROTKB|F1RHF7 - symbol:DIS3 "Uncharacterized protein" ... 417 4.1e-66 4
ZFIN|ZDB-GENE-080213-3 - symbol:dis3 "DIS3 mitotic contro... 412 6.0e-66 3
DICTYBASE|DDB_G0293614 - symbol:DDB_G0293614 "putative ex... 432 1.5e-65 3
UNIPROTKB|E1BXX6 - symbol:DIS3 "Uncharacterized protein" ... 401 5.9e-65 3
UNIPROTKB|E2RNY6 - symbol:DIS3 "Uncharacterized protein" ... 412 1.2e-64 3
FB|FBgn0039183 - symbol:Dis3 "Dis3" species:7227 "Drosoph... 362 2.0e-59 3
WB|WBGene00001001 - symbol:dis-3 species:6239 "Caenorhabd... 396 4.7e-59 2
ASPGD|ASPL0000011287 - symbol:AN3657 species:162425 "Emer... 380 1.2e-58 3
UNIPROTKB|F1PK78 - symbol:DIS3L "Uncharacterized protein"... 600 1.9e-57 2
POMBASE|SPBC26H8.10 - symbol:dis3 "3'-5' exoribonuclease ... 339 3.9e-57 2
SGD|S000005381 - symbol:DIS3 "Exosome core complex cataly... 381 1.8e-56 2
CGD|CAL0003527 - symbol:orf19.5229 species:5476 "Candida ... 350 7.6e-54 3
UNIPROTKB|F1N1R4 - symbol:DIS3 "Uncharacterized protein" ... 324 1.3e-52 3
TIGR_CMR|CHY_0289 - symbol:CHY_0289 "ribonuclease R" spec... 454 5.8e-40 2
UNIPROTKB|I3LLL5 - symbol:I3LLL5 "Uncharacterized protein... 349 6.2e-40 2
TIGR_CMR|BA_5334 - symbol:BA_5334 "ribonuclease R" specie... 445 3.2e-38 2
ASPGD|ASPL0000054659 - symbol:AN1158 species:162425 "Emer... 431 6.0e-38 2
MGI|MGI:1919912 - symbol:Dis3 "DIS3 mitotic control homol... 423 2.0e-36 2
GENEDB_PFALCIPARUM|PFF0745c - symbol:PFF0745c "ribonuclea... 218 2.7e-35 5
GENEDB_PFALCIPARUM|MAL13P1.289 - symbol:MAL13P1.289 "mito... 427 9.8e-35 3
UNIPROTKB|Q8IDB6 - symbol:MAL13P1.289 "Mitotic control pr... 427 9.8e-35 3
RGD|1304646 - symbol:Dis3 "DIS3 mitotic control homolog (... 356 1.7e-30 2
UNIPROTKB|G4NDV8 - symbol:MGG_00193 "Mitotic control prot... 368 4.0e-30 1
TIGR_CMR|GSU_1485 - symbol:GSU_1485 "ribonuclease R, puta... 361 1.3e-29 1
UNIPROTKB|F2Z2C0 - symbol:DIS3 "Exosome complex exonuclea... 347 1.8e-29 2
TIGR_CMR|CBU_1091 - symbol:CBU_1091 "ribonuclease R" spec... 210 4.8e-29 3
SGD|S000002701 - symbol:SSD1 "Translational repressor wit... 217 6.6e-27 3
UNIPROTKB|P21499 - symbol:rnr species:83333 "Escherichia ... 332 1.9e-26 2
UNIPROTKB|Q9KNY1 - symbol:rnr "Ribonuclease R" species:24... 323 2.2e-25 1
TIGR_CMR|VC_2599 - symbol:VC_2599 "ribonuclease R" specie... 323 2.2e-25 1
POMBASE|SPBC609.01 - symbol:SPBC609.01 "ribonuclease II (... 242 5.4e-25 3
TIGR_CMR|CPS_4617 - symbol:CPS_4617 "ribonuclease R" spec... 319 5.9e-25 1
UNIPROTKB|Q5HVE0 - symbol:CJE0734 "RNB-like protein" spec... 189 1.8e-21 3
TIGR_CMR|CJE_0734 - symbol:CJE_0734 "RNB-like protein" sp... 189 1.8e-21 3
TIGR_CMR|SPO_3330 - symbol:SPO_3330 "ribonuclease R" spec... 278 1.4e-20 1
CGD|CAL0003016 - symbol:SSD1 species:5476 "Candida albica... 275 7.1e-20 2
UNIPROTKB|Q5AK62 - symbol:SSD1 "Putative uncharacterized ... 275 7.1e-20 2
UNIPROTKB|I3LNA8 - symbol:I3LNA8 "Uncharacterized protein... 242 2.7e-19 1
DICTYBASE|DDB_G0285435 - symbol:DDB_G0285435 species:4468... 231 3.1e-19 5
UNIPROTKB|Q9BYK8 - symbol:HELZ2 "Helicase with zinc finge... 229 1.1e-18 3
POMBASE|SPCC16C4.09 - symbol:sts5 "RNB-like protein" spec... 175 2.0e-18 4
RGD|1306056 - symbol:Pric285 "peroxisomal proliferator-ac... 246 2.1e-18 3
UNIPROTKB|E2RBM4 - symbol:PRIC285 "Uncharacterized protei... 219 3.2e-18 3
UNIPROTKB|F1RMM8 - symbol:LOC100519780 "Uncharacterized p... 252 3.7e-18 3
TIGR_CMR|SO_3935 - symbol:SO_3935 "ribonuclease R" specie... 250 1.8e-17 1
UNIPROTKB|E1C0Z0 - symbol:HELZ2 "Uncharacterized protein"... 210 4.9e-17 3
TAIR|locus:2180172 - symbol:EMB2730 "EMBRYO DEFECTIVE 273... 211 1.4e-16 2
DICTYBASE|DDB_G0288469 - symbol:DDB_G0288469 species:4468... 184 1.0e-15 2
ZFIN|ZDB-GENE-070912-617 - symbol:si:dkey-97a13.6 "si:dke... 199 3.4e-15 2
UNIPROTKB|Q9KLE1 - symbol:rnb "Exoribonuclease 2" species... 179 1.6e-13 2
TIGR_CMR|VC_A0805 - symbol:VC_A0805 "exoribonuclease II" ... 179 1.6e-13 2
UNIPROTKB|P30850 - symbol:rnb "ribonuclease II" species:8... 183 2.2e-10 1
ASPGD|ASPL0000038338 - symbol:AN9151 species:162425 "Emer... 149 3.2e-10 2
UNIPROTKB|G4MRS6 - symbol:MGG_13800 "Mitochondrial protei... 136 1.1e-08 2
SGD|S000004900 - symbol:DSS1 "3'-5' exoribonuclease" spec... 124 8.2e-06 2
POMBASE|SPCC1322.01 - symbol:rpm1 "3'-5' exonuclease for ... 141 1.3e-05 1
CGD|CAL0000344 - symbol:orf19.3624 species:5476 "Candida ... 140 3.5e-05 2
>TAIR|locus:2203231 [details] [associations]
symbol:AT1G77680 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004540
"ribonuclease activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 OMA:HIYEYRE
EMBL:AK229034 IPI:IPI00531584 RefSeq:NP_177891.1 UniGene:At.22476
ProteinModelPortal:Q0WPN0 STRING:Q0WPN0 PaxDb:Q0WPN0 PRIDE:Q0WPN0
EnsemblPlants:AT1G77680.1 GeneID:844104 KEGG:ath:AT1G77680
TAIR:At1g77680 HOGENOM:HOG000030596 InParanoid:Q0WPN0
PhylomeDB:Q0WPN0 ProtClustDB:CLSN2682125 Genevestigator:Q0WPN0
Uniprot:Q0WPN0
Length = 1055
Score = 2261 (801.0 bits), Expect = 1.9e-234, P = 1.9e-234
Identities = 441/710 (62%), Positives = 539/710 (75%)
Query: 93 QQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKD 152
+Q +A+++L ++SS+P KRPTG+VV+++E+S RD IVG L+V W +YK D
Sbjct: 296 EQKGNCSAVDKLCGILSSFPHKRPTGQVVAVVEKSLVRDSIVGLLDVKGWIHYK---ESD 352
Query: 153 AKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARID 212
K+ +S LS+ D EY+QL P P++PK++V LP SI+ RLE D +E ELVAA+I
Sbjct: 353 PKRCKSPLSLSDDEYVQLMPADPRFPKLIVPFHVLPGSIRARLENLDPNLEAELVAAQIV 412
Query: 213 EWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEE 272
+W E SPFP A + H+FGRG E+EPQINAILY+N++C S FSP SL+ LP VPWEVP+EE
Sbjct: 413 DWGEGSPFPVAQITHLFGRGSELEPQINAILYQNSVCDSDFSPGSLTSLPRVPWEVPEEE 472
Query: 273 LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 332
+ RKDLR+ C+ TIDPSTATDLDDALS++ L G RVGVHIADVSYFVLP TALD EA
Sbjct: 473 VQRRKDLRDLCVLTIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPETALDTEA 532
Query: 333 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 392
+ RSTSVY++QRKI MLP LLSE VGSL+PG DRLAFSI WDLN GDV+DRWIGRT+IR
Sbjct: 533 RFRSTSVYLMQRKISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWIGRTIIR 592
Query: 393 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 452
SCCKLSY+HAQDIIDGK DV + GWP L+G F+W DV RS+K L E+S L+ KR
Sbjct: 593 SCCKLSYDHAQDIIDGKSDVAEN-----GWPALHGSFKWCDVTRSVKQLSEISTTLRQKR 647
Query: 453 FTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDS 512
F +GAL+LENSKPVFLFDE+G PYD V R+ NFL EEFMLLAN TAAEVI++A+ S
Sbjct: 648 FRNGALQLENSKPVFLFDEHGVPYDFVTCSRKGSNFLVEEFMLLANMTAAEVISQAYRAS 707
Query: 513 ALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINY 572
+LLRRHP PN RKL+EFE FCSKHG+ LD SSSGQ SLE+ LKDD V DIL NY
Sbjct: 708 SLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSLEKITGNLKDDSVFVDILNNY 767
Query: 573 ATRPMQLASYFCSGDFKDDT-DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
A +PMQLASYFC+G+ KD +WGHYALA P+YTHFTSPLRRYPD+VVHR L AALEAE+
Sbjct: 768 AIKPMQLASYFCTGNLKDSVAEWGHYALAVPLYTHFTSPLRRYPDIVVHRALAAALEAEE 827
Query: 632 LYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNV 691
LY K ++ EG R F TGI ++KDAAES+EG+EALSVAALK+GVP +IL +V
Sbjct: 828 LYSKQKQTAID----EG-RSCF-TGIHFNKDAAESIEGKEALSVAALKHGVPSTEILSDV 881
Query: 692 ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRI 751
A +CN+RKLA R V+DAC KLY W +LK+KE+ EARV+ LG RFMT+YI KL IERRI
Sbjct: 882 AAYCNERKLAARKVRDACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGIERRI 941
Query: 752 YYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRP 801
YYD++EGL +WLE TSTL++ K KRGG G ++ ++E +V P
Sbjct: 942 YYDQIEGLCADWLEATSTLIVD----KLYSKRGGRGFFKPMKEAVYLVSP 987
Score = 585 (211.0 bits), Expect = 4.4e-54, P = 4.4e-54
Identities = 126/232 (54%), Positives = 158/232 (68%)
Query: 647 EGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVK 706
EG R F TGI ++KDAAES+EG+EALSVAALK+GVP +IL +VA +CN+RKLA R V+
Sbjct: 839 EG-RSCF-TGIHFNKDAAESIEGKEALSVAALKHGVPSTEILSDVAAYCNERKLAARKVR 896
Query: 707 DACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLET 766
DAC KLY W +LK+KE+ EARV+ LG RFMT+YI KL IERRIYYD++EGL +WLE
Sbjct: 897 DACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGIERRIYYDQIEGLCADWLEA 956
Query: 767 TSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAK 826
TSTL++ K KRGG G ++ ++E +V P ++ V KC +
Sbjct: 957 TSTLIVD----KLYSKRGGRGFFKPMKEAVYLVSPCEV---------CVAKCSALSVHDT 1003
Query: 827 RQCSGSSSNSGVDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSY 878
S + V P VFPLTI L STIPV L+A+GG DGPL+IG RLYMSSY
Sbjct: 1004 ESPEAVSIDE-VAPAVFPLTIQLFSTIPVVLHAVGGDDGPLDIGARLYMSSY 1054
>RGD|1560168 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like
2" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007067 "mitosis"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0051306 "mitotic sister chromatid
separation" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 RGD:1560168 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
OrthoDB:EOG415GCR IPI:IPI00950040 Ensembl:ENSRNOT00000066216
UCSC:RGD:1560168 ArrayExpress:D3ZWJ4 Uniprot:D3ZWJ4
Length = 884
Score = 993 (354.6 bits), Expect = 1.5e-112, Sum P(3) = 1.5e-112
Identities = 208/465 (44%), Positives = 282/465 (60%)
Query: 165 REYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAH 224
++Y +P+ + P++ V +KD P R ++ T L RI +W E+ F
Sbjct: 275 KKYALFSPSDHRVPRIYVPLKDCPQDFMTRPKDYANT----LFICRIIDWKEDCNFALGQ 330
Query: 225 VLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP-CVPWEVPQEELLSRKDLRNFC 283
+ G+ GE+EP+ IL E + S FS E L CLP +PW +P EE+ R+DLR C
Sbjct: 331 LAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPEEVGKRRDLRKDC 390
Query: 284 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
IFTIDPSTA DLDDALS +L+DG VGVHIADVSYFV G++LD A R+TSVY++Q
Sbjct: 391 IFTIDPSTARDLDDALSCRQLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ 450
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 403
+ +PMLP LL EE+ SLNP D+L FS+ W L G +++ W GRT+IRSC KLSY+HAQ
Sbjct: 451 KVVPMLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLSYDHAQ 510
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
+I+ + L P + + +V +++ +L+ ++K L+ +RF DGALRL+
Sbjct: 511 SMIENPTEKIPKEEL----PPISPEHSIEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQL 566
Query: 464 KPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPN 522
K F D E G P + D N L EEFMLLAN A I R FP+ ALLRRHP P
Sbjct: 567 KLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQ 626
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASY 582
+ L + FC + GL +D SS+G ++SL K ++L N +RPMQ+A Y
Sbjct: 627 TKMLSDLVEFCDQMGLPMDVSSAGALNKSLTNTFGDDKYSLARKEVLTNMYSRPMQMALY 686
Query: 583 FCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
FCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL
Sbjct: 687 FCSGMLQDQAQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAAL 731
Score = 112 (44.5 bits), Expect = 1.5e-112, Sum P(3) = 1.5e-112
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 673 LSVAALKYGV-PCA--DILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEAR 729
L AAL Y P D L A HCNDR++A + V++ + L+ IL+K+ L SEA
Sbjct: 726 LLAAALGYSEQPDVEPDALQKQADHCNDRRMASKRVQELSIGLFFSILVKESGPLESEAM 785
Query: 730 VLALGPRFMTIYIEKLAIERRIY 752
V+ + + + + + +++RIY
Sbjct: 786 VMGVLNQAFDVLVLRFGVQKRIY 808
Score = 40 (19.1 bits), Expect = 1.5e-112, Sum P(3) = 1.5e-112
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 794 EVALVVRPNDLKEE 807
E+ LV P+DL+EE
Sbjct: 827 ELTLVWEPDDLEEE 840
>MGI|MGI:2442555 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S.
cerevisiae)-like 2" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0007067 "mitosis" evidence=ISO] [GO:0008285 "negative
regulation of cell proliferation" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0051306 "mitotic sister chromatid separation"
evidence=ISO] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
MGI:MGI:2442555 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 GO:GO:0051306
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 HOVERGEN:HBG107810
EMBL:AK031180 EMBL:BC036177 IPI:IPI00229771 IPI:IPI00881442
RefSeq:NP_001165628.1 RefSeq:NP_705758.1 UniGene:Mm.389152
ProteinModelPortal:Q8CI75 SMR:Q8CI75 STRING:Q8CI75
PhosphoSite:Q8CI75 PaxDb:Q8CI75 PRIDE:Q8CI75
Ensembl:ENSMUST00000065694 Ensembl:ENSMUST00000168237 GeneID:208718
KEGG:mmu:208718 UCSC:uc007bvu.2 UCSC:uc007bvv.2
HOGENOM:HOG000017705 InParanoid:Q8CI75 OMA:VQKRVYC
OrthoDB:EOG415GCR NextBio:372395 Bgee:Q8CI75 Genevestigator:Q8CI75
Uniprot:Q8CI75
Length = 870
Score = 991 (353.9 bits), Expect = 3.1e-112, Sum P(3) = 3.1e-112
Identities = 207/465 (44%), Positives = 283/465 (60%)
Query: 165 REYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAH 224
++Y +P+ + P++ V +KD P R ++ T L RI +W E+ F
Sbjct: 261 KKYALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANT----LFICRIIDWKEDCNFALGQ 316
Query: 225 VLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP-CVPWEVPQEELLSRKDLRNFC 283
+ G+ GE+EP+ IL E + S FS E L CLP +PW +P +E+ R+DLR C
Sbjct: 317 LAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPDEVGKRRDLRKDC 376
Query: 284 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
IFTIDPSTA DLDDAL+ RL+DG VGVHIADVSYFV G++LD A R+TSVY++Q
Sbjct: 377 IFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ 436
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 403
+ +PMLP LL EE+ SLNP D+L FS+ W L G +++ W GRT+IRSC KLSY+HAQ
Sbjct: 437 KVVPMLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLSYDHAQ 496
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
+I+ + L P + + +V +++ +L+ ++K L+ +RF DGALRL+
Sbjct: 497 SMIENPTEKIPEEEL----PPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQL 552
Query: 464 KPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPN 522
K F D E G P + D N L EEFMLLAN A I R FP+ ALLRRHP P
Sbjct: 553 KLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQ 612
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASY 582
+ L + FC + GL +D SS+G ++SL + K ++L N +RPMQ+A Y
Sbjct: 613 TKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVLTNMYSRPMQMALY 672
Query: 583 FCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
FCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL
Sbjct: 673 FCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAAL 717
Score = 111 (44.1 bits), Expect = 3.1e-112, Sum P(3) = 3.1e-112
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 673 LSVAALKYGV-PCA--DILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEAR 729
L AAL Y P D L A HCNDR++A + V++ + L+ +L+K+ L SEA
Sbjct: 712 LLAAALGYSEQPDVEPDTLQKQADHCNDRRMASKRVQELSIGLFFAVLVKESGPLESEAM 771
Query: 730 VLALGPRFMTIYIEKLAIERRIY 752
V+ + + + + + +++RIY
Sbjct: 772 VMGVLNQAFDVLVLRFGVQKRIY 794
Score = 40 (19.1 bits), Expect = 3.1e-112, Sum P(3) = 3.1e-112
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 794 EVALVVRPNDLKEE 807
E+ LV P+DL+EE
Sbjct: 813 ELTLVWEPDDLEEE 826
>ZFIN|ZDB-GENE-070705-171 [details] [associations]
symbol:si:ch211-273k1.4 "si:ch211-273k1.4"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070705-171 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BX001029 IPI:IPI00499069 Ensembl:ENSDART00000083272
Uniprot:E7F350
Length = 995
Score = 967 (345.5 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 211/471 (44%), Positives = 284/471 (60%)
Query: 162 VPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFP 221
+P++ + +P + P++ V + D P R GD E L RI +W +S F
Sbjct: 390 LPNKRFAMFSPVDHRVPRVNVPLADCPADFTSR--PGD--YENTLFICRITQWPADSNFA 445
Query: 222 QAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPC-VPWEVPQEELLSRKDLR 280
+ + G+ GE+EP+ IL E + S F+ E L+CLP +PW +P EL +R+DLR
Sbjct: 446 EGRLAKTLGQAGEIEPETEGILTEYGVDFSEFTEEVLNCLPQDLPWSIPAHELSTRRDLR 505
Query: 281 NFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVY 340
CIFTIDP+TA DLDDALS ++LSDG VGVHIADVSYFV G ALD A R+TSVY
Sbjct: 506 KECIFTIDPATARDLDDALSCKQLSDGNFEVGVHIADVSYFVKEGNALDELAGQRATSVY 565
Query: 341 MLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYE 400
++Q+ IPMLP LL EE+ SLNP DRL FS+ W L+ G ++ W GRTVI SC KLSY+
Sbjct: 566 LVQKVIPMLPRLLCEELCSLNPLTDRLTFSVIWKLSPEGKILSEWFGRTVICSCIKLSYD 625
Query: 401 HAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRL 460
HAQ +ID D S E P ++ ++ +L+ ++K L+ +RF GALRL
Sbjct: 626 HAQSMIDAP-DKHFSP---EELPACSPNHSIIEIQEAVLNLHNIAKQLRAQRFEGGALRL 681
Query: 461 ENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHP 519
+ K F D E P + D N L EEFMLLAN I R++P+ ALLRRHP
Sbjct: 682 DQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLLANMAVGHQIYRSYPELALLRRHP 741
Query: 520 APNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDD-YVLF--DILINYATRP 576
P + + + + F + GL +D SSSG H+SL E L DD Y +++ + +RP
Sbjct: 742 PPQTKMVDDMQEFFDQMGLDIDFSSSGALHRSLN---ENLGDDEYTAARKEVITHMCSRP 798
Query: 577 MQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
MQ+A YFC+G KD+ + HYAL P+YTHFTSP+RRY D++VHR L A+L
Sbjct: 799 MQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRRYADVIVHRLLGASL 849
Score = 112 (44.5 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 692 ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRI 751
A+HCNDRK A + V++ +L+ + +K+ L SEA V+ + + + + + +++RI
Sbjct: 866 ASHCNDRKTASKRVQELSSELFFAVFVKECGPLDSEAMVMGVLDQSFDVLVLRYGVQKRI 925
Query: 752 YYDEVEGL 759
Y + +EGL
Sbjct: 926 YCNSLEGL 933
Score = 46 (21.3 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 109 SSYPTKRPTGRVVSIIERSPRRDGIVGFL 137
SS T + G+VV I+E+ R + GFL
Sbjct: 360 SSERTTQKNGKVVFIVEKKHSR-AVSGFL 387
>UNIPROTKB|Q8IYB7 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0051306 "mitotic sister
chromatid separation" evidence=IMP] [GO:0008285 "negative
regulation of cell proliferation" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 Orphanet:654
GO:GO:0051306 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
EMBL:AK094293 EMBL:AL834174 EMBL:BX648325 EMBL:AF443854
EMBL:AC019130 EMBL:AC068134 EMBL:AC093374 EMBL:AC138658
EMBL:BC026166 EMBL:BC036113 IPI:IPI00167753 IPI:IPI00217752
IPI:IPI00385160 IPI:IPI00465384 IPI:IPI00880048
RefSeq:NP_001244210.1 RefSeq:NP_001244211.1 RefSeq:NP_689596.4
UniGene:Hs.732236 ProteinModelPortal:Q8IYB7 IntAct:Q8IYB7
MINT:MINT-1386910 STRING:Q8IYB7 PhosphoSite:Q8IYB7 DMDM:296439471
PaxDb:Q8IYB7 PRIDE:Q8IYB7 DNASU:129563 Ensembl:ENST00000273009
Ensembl:ENST00000325385 Ensembl:ENST00000360410
Ensembl:ENST00000390005 Ensembl:ENST00000409307
Ensembl:ENST00000409401 Ensembl:ENST00000433430
Ensembl:ENST00000445090 GeneID:129563 KEGG:hsa:129563
UCSC:uc010fxz.3 CTD:129563 GeneCards:GC02P232825 H-InvDB:HIX0002923
HGNC:HGNC:28648 HPA:HPA035797 MIM:267000 MIM:614184
neXtProt:NX_Q8IYB7 Orphanet:2849 PharmGKB:PA162383714
HOVERGEN:HBG107810 InParanoid:Q8IYB7 OMA:HIYEYRE ChiTaRS:DIS3L2
GenomeRNAi:129563 NextBio:82609 ArrayExpress:Q8IYB7 Bgee:Q8IYB7
CleanEx:HS_DIS3L2 Genevestigator:Q8IYB7 Uniprot:Q8IYB7
Length = 885
Score = 998 (356.4 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 213/465 (45%), Positives = 284/465 (61%)
Query: 165 REYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAH 224
R+Y +P+ + P++ V +KD P R ++ T L RI +W E+ F
Sbjct: 263 RKYALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANT----LFICRIVDWKEDCNFALGQ 318
Query: 225 VLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPC-VPWEVPQEELLSRKDLRNFC 283
+ G+ GE+EP+ IL E + S FS E L CLP +PW +P EE R+DLR C
Sbjct: 319 LAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSKRRDLRKDC 378
Query: 284 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
IFTIDPSTA DLDDALS + L+DG +VGVHIADVSYFV G+ LD A R+TSVY++Q
Sbjct: 379 IFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQ 438
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 403
+ +PMLP LL EE+ SLNP D+L FS+ W L G ++D W GRT+IRSC KLSYEHAQ
Sbjct: 439 KVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIRSCTKLSYEHAQ 498
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
+I+ + + L P + + +V +++ +L+ ++K L+ +RF DGALRL+
Sbjct: 499 SMIESPTEKIPAKEL----PPISPEHSSEEVHQAVLNLHGIAKQLRQQRFVDGALRLDQL 554
Query: 464 KPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPN 522
K F D E G P + + N L EEFMLLAN A I RAFP+ ALLRRHP P
Sbjct: 555 KLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQ 614
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASY 582
R L + FC + GL +D SS+G ++SL Q K ++L N +RPMQ+A Y
Sbjct: 615 TRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLTNMCSRPMQMALY 674
Query: 583 FCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
FCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL
Sbjct: 675 FCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAAL 719
Score = 110 (43.8 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 686 DILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKL 745
D L A HCNDR++A + V++ L+ +L+K+ L SEA V+ + + + + +
Sbjct: 730 DTLQKQADHCNDRRMASKRVQELSTSLFFAVLVKESGPLESEAMVMGILKQAFDVLVLRY 789
Query: 746 AIERRIY 752
+++RIY
Sbjct: 790 GVQKRIY 796
>UNIPROTKB|E1C372 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0051306 "mitotic sister chromatid
separation" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:VQKRVYC EMBL:AADN02020657
EMBL:AADN02020658 EMBL:AADN02020659 EMBL:AADN02020660
EMBL:AADN02020661 EMBL:AADN02020662 EMBL:AADN02020663
IPI:IPI00578279 Ensembl:ENSGALT00000012599 Uniprot:E1C372
Length = 875
Score = 1007 (359.5 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 215/459 (46%), Positives = 283/459 (61%)
Query: 171 TPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFG 230
+P + P+ V + D P R E+ M L RI +W E+S F + G
Sbjct: 272 SPVDHRVPRAYVSLADCPSDFVARPEDYS---NM-LFICRIVDWKEDSNFASGQLAKSLG 327
Query: 231 RGGEVEPQINAILYENAICCSGFSPESLSCLPC-VPWEVPQEELLSRKDLRNFCIFTIDP 289
+ GE+EP+ IL E + S FSPE+L CLP +PW + E+ R+DLR CIFTIDP
Sbjct: 328 QAGEIEPETEGILTEYGVDFSDFSPEALECLPQGLPWVISPGEMAKRRDLRKECIFTIDP 387
Query: 290 STATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPML 349
STA DLDDALS ++L DG VGVHIADVSYFVL TALD A R+TSVY++Q+ IPML
Sbjct: 388 STAKDLDDALSCKQLPDGNFEVGVHIADVSYFVLEETALDRVASERATSVYLVQKVIPML 447
Query: 350 PVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 409
P LL EE+ SLNP DRL FS+ W + G ++D W GRTVI SC KLSY+HAQ +I+
Sbjct: 448 PKLLCEELCSLNPMRDRLTFSVMWKVTPEGKILDEWFGRTVICSCAKLSYDHAQSMIENP 507
Query: 410 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 469
V S L P + Q +++ +++ +L+ +++ L+ +RF DGALRL+ K F
Sbjct: 508 GKVFSPEEL----PPISPQHSVAEIQQAVLNLHHIARHLRKQRFIDGALRLDQLKLSFTL 563
Query: 470 D-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLRE 528
D E G P + D N L EEFMLLAN A I R+FP+ ALLRRHP P + L +
Sbjct: 564 DQESGMPQGCYIYQYRDSNKLVEEFMLLANMAVAHQIYRSFPEQALLRRHPPPQSKLLND 623
Query: 529 FEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDF 588
FC + GL++D SS+G H+SL + K ++L N +RPMQ+A YFC+G
Sbjct: 624 LMEFCHQVGLEIDFSSAGSLHKSLNETFGADKYSEARKEVLTNMFSRPMQMALYFCTGVL 683
Query: 589 KDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
KD+T + HYAL P YTHFTSP+RRY D+VVHR L+A+L
Sbjct: 684 KDETLFRHYALNVPFYTHFTSPIRRYADVVVHRLLSASL 722
Score = 98 (39.6 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 692 ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRI 751
A HCNDRK+A + V++ L+ + +++ L SEA V+ + + + K +++RI
Sbjct: 739 AEHCNDRKMASKRVQELSTDLFFAVFVRECGPLESEAMVMGVLNEAFDVLVLKFGVQKRI 798
Query: 752 Y 752
Y
Sbjct: 799 Y 799
>UNIPROTKB|E1B7R0 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 OMA:VQKRVYC
EMBL:DAAA02006206 EMBL:DAAA02006207 EMBL:DAAA02006208
IPI:IPI00693579 RefSeq:NP_001179435.1 UniGene:Bt.54653
ProteinModelPortal:E1B7R0 Ensembl:ENSBTAT00000038112 GeneID:519222
KEGG:bta:519222 NextBio:20872834 Uniprot:E1B7R0
Length = 882
Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
Identities = 236/540 (43%), Positives = 309/540 (57%)
Query: 165 REYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAH 224
R+Y +P+ + P++ V +KD P R ++ T L RI +W E+S F
Sbjct: 263 RKYALFSPSDHRVPRIYVPLKDCPQDFVTRPKDYANT----LFICRIMDWKEDSNFALGQ 318
Query: 225 VLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPC-VPWEVPQEELLSRKDLRNFC 283
+ G+ GE+EP+ IL E + S FS E L CLP +PW +P EE R+DLR C
Sbjct: 319 LAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSRRRDLRKDC 378
Query: 284 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
IFTIDPSTA DLDDALS + L+DG VGVHIADVSYFV G++LD A R+TSVY++Q
Sbjct: 379 IFTIDPSTARDLDDALSCKSLADGNFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ 438
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 403
+ +PMLP LL EE+ SLNP D+L FS+ W L G ++ W GRT+IRSC KLSYEHAQ
Sbjct: 439 KVVPMLPRLLCEELCSLNPMTDKLTFSVIWTLTPKGKILAEWFGRTIIRSCTKLSYEHAQ 498
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
+I+ L P + + +V R++ +L+ V+K L+ +RF DGALRL+
Sbjct: 499 SMIESPTRRIPEREL----PAISPEHTCDEVHRAVLNLHGVAKELRRQRFADGALRLDQL 554
Query: 464 KPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPN 522
K F D E G P + D N L EEFMLLAN A I RAFP+ ALLRRHP P
Sbjct: 555 KLAFTLDHETGLPQGCHVYEYRDSNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQ 614
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDD-YVLF--DILINYATRPMQL 579
+ L + FC + GL +D SS+G ++SL E DD Y L ++L N +RPMQ+
Sbjct: 615 TKMLNDLVEFCDQMGLPMDFSSAGALNKSLT---EMFGDDKYSLARKEVLTNMCSRPMQM 671
Query: 580 ASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRM 639
A YFCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L +AL +L
Sbjct: 672 AVYFCSGALRDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLASALGYRELPDVEPDS 731
Query: 640 LPKN----NHREGVRGR---FLTGIFYDKDAAES--LEGR--------EALSVAALKYGV 682
L K N R R TG+F+ ES LE +A V L+YGV
Sbjct: 732 LQKQADHCNDRRMASKRVQELSTGLFFAILVRESGPLESEAMVMGVLNQAFDVLVLRYGV 791
>UNIPROTKB|E2QZ40 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
Ensembl:ENSCAFT00000017770 Uniprot:E2QZ40
Length = 870
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 237/577 (41%), Positives = 319/577 (55%)
Query: 125 ERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLV 184
E+S +R V +++ + G K S L R+Y +P+ + P++ V +
Sbjct: 224 EKSLQRSAKVVYISEKKHSRAATGFLKLLADKNSELF---RKYALFSPSDHRVPRIYVPL 280
Query: 185 KDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILY 244
KD P R ++ T L RI +W E+S F + G+ GE+EP+ IL
Sbjct: 281 KDCPQDFVTRPKDYANT----LFICRIVDWKEDSNFALGQLAKSLGQAGEIEPETEGILT 336
Query: 245 ENAICCSGFSPESLSCLPC-VPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIER 303
E + S FS E L CLP +PW +P EE R+DLR CIFTIDPSTA DLDDALS +
Sbjct: 337 EYGVDFSDFSSEVLDCLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKP 396
Query: 304 LSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 363
L+DG VGVHIADVSYFV G+ LD A R+TSVY++Q+ +PMLP LL EE+ SL+P
Sbjct: 397 LADGNFEVGVHIADVSYFVPEGSPLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLHPM 456
Query: 364 VDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWP 423
D+L FS+ W L G ++ W GRT+IRSC KLSYEHAQ +I+ + L P
Sbjct: 457 SDKLTFSVIWTLTPEGKILGEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPEEEL----P 512
Query: 424 QLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSG 482
+ + +V R++ +L++++K L+ +RF DGALRL+ K F D E G P +
Sbjct: 513 PISPEHTSEEVHRAVLNLHKIAKELRKQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYE 572
Query: 483 REDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDT 542
D N L EEFMLLAN A R FP+ ALLRRHP P + L + FC + GL +D
Sbjct: 573 YRDSNKLVEEFMLLANMAVAHKTHRTFPERALLRRHPPPQTKMLNDLMEFCDQMGLPMDF 632
Query: 543 SSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFP 602
SS+G ++SL + K ++L N +RPMQ+A YFCSG +D + HYAL P
Sbjct: 633 SSAGALNKSLTETFGDDKYSLARKEVLTNMCSRPMQMALYFCSGVLQDQAQFRHYALNVP 692
Query: 603 VYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKN----NHREGVRGR---FLT 655
+YTHFTSP+RR+ D++VHR L AAL +L L K N R R T
Sbjct: 693 LYTHFTSPIRRFADVLVHRLLAAALGYRELPDMEPDTLQKQADHCNDRRMASKRVQELST 752
Query: 656 GIFYDKDAAES--LEGR--------EALSVAALKYGV 682
G+F+ ES LE +A V L+YGV
Sbjct: 753 GLFFAILVKESGPLESEAMVLGVLNQAFDVLVLRYGV 789
>UNIPROTKB|F6XKS7 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
CTD:129563 OMA:VQKRVYC EMBL:AAEX03014445 Ensembl:ENSCAFT00000017770
EMBL:AAEX03014441 EMBL:AAEX03014442 EMBL:AAEX03014443
EMBL:AAEX03014444 RefSeq:XP_852722.1 ProteinModelPortal:F6XKS7
GeneID:610194 KEGG:cfa:610194 Uniprot:F6XKS7
Length = 879
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 237/577 (41%), Positives = 319/577 (55%)
Query: 125 ERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLV 184
E+S +R V +++ + G K S L R+Y +P+ + P++ V +
Sbjct: 224 EKSLQRSAKVVYISEKKHSRAATGFLKLLADKNSELF---RKYALFSPSDHRVPRIYVPL 280
Query: 185 KDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILY 244
KD P R ++ T L RI +W E+S F + G+ GE+EP+ IL
Sbjct: 281 KDCPQDFVTRPKDYANT----LFICRIVDWKEDSNFALGQLAKSLGQAGEIEPETEGILT 336
Query: 245 ENAICCSGFSPESLSCLPC-VPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIER 303
E + S FS E L CLP +PW +P EE R+DLR CIFTIDPSTA DLDDALS +
Sbjct: 337 EYGVDFSDFSSEVLDCLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKP 396
Query: 304 LSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 363
L+DG VGVHIADVSYFV G+ LD A R+TSVY++Q+ +PMLP LL EE+ SL+P
Sbjct: 397 LADGNFEVGVHIADVSYFVPEGSPLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLHPM 456
Query: 364 VDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWP 423
D+L FS+ W L G ++ W GRT+IRSC KLSYEHAQ +I+ + L P
Sbjct: 457 SDKLTFSVIWTLTPEGKILGEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPEEEL----P 512
Query: 424 QLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSG 482
+ + +V R++ +L++++K L+ +RF DGALRL+ K F D E G P +
Sbjct: 513 PISPEHTSEEVHRAVLNLHKIAKELRKQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYE 572
Query: 483 REDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDT 542
D N L EEFMLLAN A R FP+ ALLRRHP P + L + FC + GL +D
Sbjct: 573 YRDSNKLVEEFMLLANMAVAHKTHRTFPERALLRRHPPPQTKMLNDLMEFCDQMGLPMDF 632
Query: 543 SSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFP 602
SS+G ++SL + K ++L N +RPMQ+A YFCSG +D + HYAL P
Sbjct: 633 SSAGALNKSLTETFGDDKYSLARKEVLTNMCSRPMQMALYFCSGVLQDQAQFRHYALNVP 692
Query: 603 VYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKN----NHREGVRGR---FLT 655
+YTHFTSP+RR+ D++VHR L AAL +L L K N R R T
Sbjct: 693 LYTHFTSPIRRFADVLVHRLLAAALGYRELPDMEPDTLQKQADHCNDRRMASKRVQELST 752
Query: 656 GIFYDKDAAES--LEGR--------EALSVAALKYGV 682
G+F+ ES LE +A V L+YGV
Sbjct: 753 GLFFAILVKESGPLESEAMVLGVLNQAFDVLVLRYGV 789
>POMBASE|SPAC2C4.07c [details] [associations]
symbol:SPAC2C4.07c "ribonuclease II (RNB) family
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006401 "RNA catabolic process" evidence=ISM]
[GO:0033554 "cellular response to stress" evidence=IEP]
InterPro:IPR001900 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
PomBase:SPAC2C4.07c GO:GO:0005829 EMBL:CU329670 GO:GO:0033554
GO:GO:0003723 GO:GO:0006401 GO:GO:0004527 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 EMBL:AB027825
PIR:T38518 RefSeq:NP_594510.1 ProteinModelPortal:O14040
STRING:O14040 EnsemblFungi:SPAC2C4.07c.1 GeneID:2542643
KEGG:spo:SPAC2C4.07c OMA:WIISHEE OrthoDB:EOG4MGWGN NextBio:20803692
Uniprot:O14040
Length = 927
Score = 943 (337.0 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 217/534 (40%), Positives = 305/534 (57%)
Query: 98 MNAIERLSAM-ISSYP-TKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKK 155
M +ERL ++S+ R RVV+I E+ IVG L W + K
Sbjct: 273 MEHLERLEIKSVASFKGDSRTRARVVAI-EKRAEISKIVGILRAPGW----------SLK 321
Query: 156 NRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWN 215
N +S Y P + P + + DL D + E +L + I W+
Sbjct: 322 NVEYVSKKS-SYAIFIPKDKRLPFITIHKNDLSDLSGENWIENILKHHDQLFSVEITRWS 380
Query: 216 EESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLS 275
S +P + G +VE NA+L EN I S FS E L+CLP W + EE+
Sbjct: 381 IYSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDWIISHEEIKK 440
Query: 276 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 335
R+DLRN I TIDP TA DLDDA+S L +G VGVHIADV++FV P +ALD EA R
Sbjct: 441 RRDLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFVKPDSALDKEAASR 500
Query: 336 STSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSC 394
+T+VY++Q+ IPMLP LL E + SLNP V+RLAFS+FW L+S G ++ RW G+TVI++C
Sbjct: 501 ATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWFGKTVIKTC 560
Query: 395 CKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFT 454
+L+Y AQ +I+GK + +G+ P + G DV SI +L E+S+ L+ RF
Sbjct: 561 ARLAYSEAQGVIEGK---SWDDAVGK--P-IGGTHTPKDVETSILTLCEISRKLRKDRFA 614
Query: 455 DGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSAL 514
GA+ + +++ F DEYG P + + D N L EEFMLLAN++ AE I++ F +++L
Sbjct: 615 KGAVEINSTELKFQLDEYGMPNKCEVYEQTDANHLIEEFMLLANRSVAEHISKNFSNNSL 674
Query: 515 LRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYAT 574
LRRH +P +++ EF F D SSS F+ S+ + R ++ V ++ N A
Sbjct: 675 LRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELV--ELFENMAV 732
Query: 575 RPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
R + A YFC+GDF + TDW HYAL+F YTHFTSP+RRYPD++VHR L +L+
Sbjct: 733 RSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSLK 786
Score = 58 (25.5 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 691 VATHCNDRKLACRNVKDACVKLYMWILL----KK--KEVLLSEARVLALGPRFMTIYIEK 744
VA HCN++K V++ +L++ + + KK K+ + +A + + +YI +
Sbjct: 800 VAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMPVQAFATRISGNSIDVYISE 859
Query: 745 LAIERRIYY---DEVEGLIV 761
I R+ D ++ IV
Sbjct: 860 YGISNRVDLSSDDRIKSFIV 879
>DICTYBASE|DDB_G0278757 [details] [associations]
symbol:DDB_G0278757 "DIS3-like exonuclease 2"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0278757 GO:GO:0003723 EMBL:AAFI02000024
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
RefSeq:XP_641919.1 ProteinModelPortal:Q54XT5
EnsemblProtists:DDB0206173 GeneID:8621677 KEGG:ddi:DDB_G0278757
InParanoid:Q54XT5 OMA:EICTIDP ProtClustDB:CLSZ2447996
Uniprot:Q54XT5
Length = 1343
Score = 903 (322.9 bits), Expect = 2.5e-97, Sum P(2) = 2.5e-97
Identities = 197/485 (40%), Positives = 282/485 (58%)
Query: 167 YIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVL 226
+ P PK + + +P K E+ + LV+ W E S P H
Sbjct: 722 FTNFIPMDTTLPKCCIFKESIPQ-YKSNPEK----YKKSLVSVGYSGWKETSLLPIGHYK 776
Query: 227 HVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVP----WEVPQEELLSRKDLRNF 282
+FG G++EP+ A+L E + FS E + CLP + W +++L R+DLRN
Sbjct: 777 SLFGECGKIEPETYALLSEFGVETDPFSKEVMECLPKIDQSKLWLPSEQDLKGRRDLRNL 836
Query: 283 CIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYML 342
I TIDP TA DLDDAL L DG VGVHIADVS+FV P TALD AQ ++T+VY++
Sbjct: 837 EICTIDPDTAKDLDDALHCIELEDGNFEVGVHIADVSHFVKPDTALDKCAQRKATTVYLV 896
Query: 343 QRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHA 402
Q+ IPMLP LLSEE+ SLN GV+RLAFS+ W L+ G+++D W GR+VI+S +L+Y A
Sbjct: 897 QKAIPMLPSLLSEELCSLNMGVERLAFSVIWKLSPTGEILDEWFGRSVIKSFSRLTYAIA 956
Query: 403 QDIIDGKFDVESSNTL-GEGWPQLYGQFEWSDVVR---SIKSLYEVSKILKDKRFTDGAL 458
Q +ID K + + + + G + R + L ++K ++ R +GA
Sbjct: 957 QALIDDKITNAWEDWIPADKMRKDLGPNTAQHIARVKKGVLGLRSIAKHMRSNRIANGAF 1016
Query: 459 RLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRH 518
+ SK F D+ G P + + + N L EE+MLLAN AE I + FP ++LLRRH
Sbjct: 1017 TIHPSKLAFALDDKGNPVSTKIYPIYESNNLVEEYMLLANMRVAERIGKFFPSNSLLRRH 1076
Query: 519 PAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQ 578
P+PN KL F +FCSKHG ++D+SSS F +S+++ ++ D +L I + + R M+
Sbjct: 1077 PSPNENKLESFISFCSKHGFEIDSSSSLTFGESIKKLKDTCTDINILMAIQL-LSIRSMK 1135
Query: 579 LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRR 638
LA YFCS + +++ DW HYAL P YTHFTSP+RRY D++VHR L+ +++ EK H
Sbjct: 1136 LAEYFCSNN-EEEEDWRHYALNAPFYTHFTSPIRRYADIIVHRLLDLSIQVEKNNRNHTE 1194
Query: 639 MLPKN 643
LP +
Sbjct: 1195 QLPSS 1199
Score = 94 (38.1 bits), Expect = 2.5e-97, Sum P(2) = 2.5e-97
Identities = 19/82 (23%), Positives = 45/82 (54%)
Query: 682 VPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIY 741
+P ++ + + +CN++KL R ++ K+++ +LL+ +EA L G ++
Sbjct: 1196 LPSSESITAICKNCNEKKLNARKAQERSDKVFLCVLLENHPTT-TEAVALNTGASYIVCI 1254
Query: 742 IEKLAIERRIYYDEV--EGLIV 761
+ + E+++Y D++ EG I+
Sbjct: 1255 VPQFGSEQKVYLDDLQKEGTIL 1276
>WB|WBGene00018612 [details] [associations]
symbol:F48E8.6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:FO081421 GO:GO:0003723 GO:GO:0090305
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:HIYEYRE HOGENOM:HOG000017705
PIR:T16409 RefSeq:NP_498160.2 ProteinModelPortal:Q09568 SMR:Q09568
STRING:Q09568 PaxDb:Q09568 EnsemblMetazoa:F48E8.6 GeneID:175748
KEGG:cel:CELE_F48E8.6 UCSC:F48E8.6 CTD:175748 WormBase:F48E8.6
InParanoid:Q09568 NextBio:889474 Uniprot:Q09568
Length = 848
Score = 762 (273.3 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 177/464 (38%), Positives = 256/464 (55%)
Query: 173 THPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRG 232
T + P++++ D+ R ++ E L A+I +W ES + ++ + G
Sbjct: 231 TDSRVPRILIPKSDVDKEFFSRPKD----FERFLYTAKITDWRAESVYADGRLVKLLGMS 286
Query: 233 GEVEPQINAILYENAICCSGFSPESLSCLPCVP---WEVPQEELLSRKDLRNFCIFTIDP 289
GE++ + I+YE+ I FS E L LP W+VP E R+D R+ +FTIDP
Sbjct: 287 GEIDTETERIVYEHQIDHREFSDECLESLPITTAENWKVPDAEFEYRRDFRSDIVFTIDP 346
Query: 290 STATDLDDALSIERLSD----GIS--RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
TA DLDDAL + + D G +GVHIADV++F+ GT LD A R S Y+ Q
Sbjct: 347 KTARDLDDALHAKHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELDKWASERGNSTYLSQ 406
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 403
IPMLP +L E++ SLNPGVDRL+FS + ++ ++ D W GR+VIRS KL+YEHAQ
Sbjct: 407 TVIPMLPRILCEQLCSLNPGVDRLSFSTVFKMSYEAELYDVWFGRSVIRSRVKLAYEHAQ 466
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
D I+ E T E P + ++ L+ ++++L+ KR GALR+E
Sbjct: 467 DFIENP---EKDFTCDE-LPDISDGNTPFEIKEKTLMLHRIAQVLRQKREDSGALRIELP 522
Query: 464 KPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNM 523
+ F DE P + +D N L EEFMLLAN A+ IA FP+ ALLR HP P
Sbjct: 523 RLKFALDEDKKPQGVSIYEIKDSNKLVEEFMLLANMEVAKKIAENFPEHALLRNHPPPKE 582
Query: 524 RKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYF 583
+ +++ C++ G LD +SG SL + + K + D + ++ + +PMQ A YF
Sbjct: 583 KMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKSRLDMCIRQVISSLTIKPMQQAKYF 642
Query: 584 CSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
C+ + + H+AL YTHFTSP+RRYPD++VHR L AAL
Sbjct: 643 CTFEMPLSF-YHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAAL 685
Score = 86 (35.3 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 691 VATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERR 750
+ T CND KLA + D LY + + + + +A VL + + I + + +R
Sbjct: 701 ICTRCNDTKLASKEASDESAMLYFGVFIHQTGPMKCQAVVLGVMDLSFDVLIVEYGVVKR 760
Query: 751 IYYDEVE 757
+Y D+++
Sbjct: 761 VYVDKMK 767
Score = 56 (24.8 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 118 GRVVSIIERSPRRDGIVGFLN-VNQWFNYKGGSRKDAKKNRSS 159
G VV++ + P+ D +V ++ V W +K G R K + +S
Sbjct: 124 GDVVAV-KIKPKEDWLVNYVEYVKWWAEHKKGDRNSGKTDNNS 165
Score = 41 (19.5 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 18 TEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDD 55
T+A + KG +++ Y C L KG +H D
Sbjct: 74 TDAGIEDGSMFKGVLRINPK-NYQECFLDHPKGTNHPD 110
>UNIPROTKB|H7C440 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:AC013435
GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175 EMBL:AC019130
EMBL:AC068134 EMBL:AC093374 EMBL:AC138658 HGNC:HGNC:28648
ChiTaRS:DIS3L2 EMBL:AC105461 ProteinModelPortal:H7C440
Ensembl:ENST00000424049 Bgee:H7C440 Uniprot:H7C440
Length = 383
Score = 848 (303.6 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 178/358 (49%), Positives = 231/358 (64%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
EE R+DLR CIFTIDPSTA DLDDALS + L+DG +VGVHIADVSYFV G+ LD
Sbjct: 1 EEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDK 60
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTV 390
A R+TSVY++Q+ +PMLP LL EE+ SLNP D+L FS+ W L G ++D W GRT+
Sbjct: 61 VAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTI 120
Query: 391 IRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKD 450
IRSC KLSYEHAQ +I+ + + L P + + +V +++ +L+ ++K L+
Sbjct: 121 IRSCTKLSYEHAQSMIESPTEKIPAKEL----PPISPEHSSEEVHQAVLNLHGIAKQLRQ 176
Query: 451 KRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAF 509
+RF DGALRL+ K F D E G P + + N L EEFMLLAN A I RAF
Sbjct: 177 QRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAF 236
Query: 510 PDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDIL 569
P+ ALLRRHP P R L + FC + GL +D SS+G ++SL Q K ++L
Sbjct: 237 PEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVL 296
Query: 570 INYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
N +RPMQ+A YFCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL
Sbjct: 297 TNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAAL 354
Score = 51 (23.0 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 686 DILVNVATHCNDRKLACR 703
D L A HCNDR++A +
Sbjct: 365 DTLQKQADHCNDRRMASK 382
>UNIPROTKB|A0JN80 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0000175
GO:GO:0000177 EMBL:BC126555 IPI:IPI00701147 RefSeq:NP_001071624.1
UniGene:Bt.10856 ProteinModelPortal:A0JN80 STRING:A0JN80
PRIDE:A0JN80 GeneID:777771 KEGG:bta:777771 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InParanoid:A0JN80 OrthoDB:EOG4229HZ NextBio:20924325
InterPro:IPR022966 PROSITE:PS01175 Uniprot:A0JN80
Length = 1053
Score = 730 (262.0 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 166/447 (37%), Positives = 252/447 (56%)
Query: 191 IKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICC 250
I+ ++ +A + +V RID W S +P H + V GR G++E +I IL EN+I
Sbjct: 377 IRISTQQAEALQDFRVVV-RIDSWESTSMYPNGHFVRVLGRIGDLEGEIATILVENSISV 435
Query: 251 SGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPSTATDLDDALSIERLS 305
FS + +P PW+V +E R+DLR +F+IDPS D+DD LS+ L
Sbjct: 436 VPFSEAQMCEMPVNTPENPWKVSSQEEREREDLRKTHLVFSIDPSGCEDVDDTLSVRALD 495
Query: 306 DGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVD 365
+G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP +LS +V SL GVD
Sbjct: 496 NGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSLLGGVD 555
Query: 366 RLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQ 424
R A S+ W+L+ + + W GRT+IRS KL YE AQD++DG F V + +
Sbjct: 556 RYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNFSVVKDIPEFKDLDE 615
Query: 425 LYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGRE 484
Q + ++V +I+ L ++++ ++ KR + GAL LE + DE +D +
Sbjct: 616 KSRQAKLEELVWAIRKLTDIARHIRAKRDSCGALELEGVEVRIQLDEKKNIHDLIPKQPL 675
Query: 485 DLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSS 544
+++ E M+LAN A+ I +FP ALLRRHP P+ E G +DT S
Sbjct: 676 EVHETVAECMILANHWVAKKIWESFPHQALLRRHPPPHQEFFSELRECAKAKGFFIDTRS 735
Query: 545 SGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVY 604
+ SL+ A + +D ++ +L + AT+ M A YF +G ++ ++ HY LA Y
Sbjct: 736 NKALADSLDNANDP--NDPIVNKLLRSMATQAMSNALYFSTGSCAEE-EFHHYGLALDKY 792
Query: 605 THFTSPLRRYPDLVVHRTLNAALEAEK 631
THFTSP+RRY D++VHR L AA+ +K
Sbjct: 793 THFTSPIRRYSDIIVHRLLMAAISKDK 819
Score = 57 (25.1 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 16/79 (20%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYI 742
L + H N+R A ++ + +L+ + K K E +S+ + ++ + ++I
Sbjct: 833 LEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEERCISDGVIYSIRTNGVLVFI 892
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL+V
Sbjct: 893 PRFGIKGAAYLRNKDGLVV 911
Score = 52 (23.4 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQ 141
PTGRVV I++++ RD +V F ++ +
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSIEE 354
>UNIPROTKB|F1MEA6 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
IPI:IPI00701147 InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:DAAA02027893
Ensembl:ENSBTAT00000000481 Uniprot:F1MEA6
Length = 1053
Score = 730 (262.0 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 166/447 (37%), Positives = 252/447 (56%)
Query: 191 IKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICC 250
I+ ++ +A + +V RID W S +P H + V GR G++E +I IL EN+I
Sbjct: 377 IRISTQQAEALQDFRVVV-RIDSWESTSMYPNGHFVRVLGRIGDLEGEIATILVENSISV 435
Query: 251 SGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPSTATDLDDALSIERLS 305
FS + +P PW+V +E R+DLR +F+IDPS D+DD LS+ L
Sbjct: 436 VPFSEAQMCEMPVNTPENPWKVSSQEEREREDLRKTHLVFSIDPSGCEDVDDTLSVRALD 495
Query: 306 DGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVD 365
+G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP +LS +V SL GVD
Sbjct: 496 NGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSLLGGVD 555
Query: 366 RLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQ 424
R A S+ W+L+ + + W GRT+IRS KL YE AQD++DG F V + +
Sbjct: 556 RYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNFSVVKDIPEFKDLDE 615
Query: 425 LYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGRE 484
Q + ++V +I+ L ++++ ++ KR + GAL LE + DE +D +
Sbjct: 616 KSRQAKLEELVWAIRKLTDIARHIRAKRDSCGALELEGVEVRIQLDEKKNIHDLIPKQPL 675
Query: 485 DLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSS 544
+++ E M+LAN A+ I +FP ALLRRHP P+ E G +DT S
Sbjct: 676 EVHETVAECMILANHWVAKKIWESFPHQALLRRHPPPHQEFFSELRECAKAKGFFIDTRS 735
Query: 545 SGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVY 604
+ SL+ A + +D ++ +L + AT+ M A YF +G ++ ++ HY LA Y
Sbjct: 736 NKALADSLDNANDP--NDPIVNKLLRSMATQAMSNALYFSTGSCAEE-EFHHYGLALDKY 792
Query: 605 THFTSPLRRYPDLVVHRTLNAALEAEK 631
THFTSP+RRY D++VHR L AA+ +K
Sbjct: 793 THFTSPIRRYSDIIVHRLLMAAISKDK 819
Score = 57 (25.1 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 16/79 (20%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYI 742
L + H N+R A ++ + +L+ + K K E +S+ + ++ + ++I
Sbjct: 833 LEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEERCISDGVIYSIRTNGVLVFI 892
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL+V
Sbjct: 893 PRFGIKGAAYLRNKDGLVV 911
Score = 52 (23.4 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQ 141
PTGRVV I++++ RD +V F ++ +
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSIEE 354
>UNIPROTKB|Q8TF46 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP;IDA] [GO:0016075
"rRNA catabolic process" evidence=IMP;IDA] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005886
GO:GO:0005813 GO:GO:0003723 GO:GO:0016075 EMBL:CH471082
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 EMBL:AB075835 EMBL:AK095407 EMBL:AC055855
EMBL:BC014124 EMBL:BC022089 IPI:IPI00291003 IPI:IPI00295876
IPI:IPI00879677 IPI:IPI00879828 RefSeq:NP_001137160.1
RefSeq:NP_588616.1 UniGene:Hs.446251 ProteinModelPortal:Q8TF46
SMR:Q8TF46 IntAct:Q8TF46 STRING:Q8TF46 PhosphoSite:Q8TF46
DMDM:166201903 PaxDb:Q8TF46 PeptideAtlas:Q8TF46 PRIDE:Q8TF46
DNASU:115752 Ensembl:ENST00000319194 Ensembl:ENST00000319212
GeneID:115752 KEGG:hsa:115752 UCSC:uc002app.3 UCSC:uc002apq.2
GeneCards:GC15P066585 HGNC:HGNC:28698 HPA:HPA041805 MIM:614183
neXtProt:NX_Q8TF46 PharmGKB:PA162383675 InParanoid:Q8TF46
OMA:IPRFGIK ChiTaRS:DIS3L GenomeRNAi:115752 NextBio:79674
ArrayExpress:Q8TF46 Bgee:Q8TF46 CleanEx:HS_DIS3L
Genevestigator:Q8TF46 Uniprot:Q8TF46
Length = 1054
Score = 713 (256.0 bits), Expect = 6.0e-77, Sum P(3) = 6.0e-77
Identities = 172/480 (35%), Positives = 266/480 (55%)
Query: 160 LSVPDREYIQLTPTHPKYPKMVVLVKD--LPDSIKKRLEEGDATIEMELVAARIDEWNEE 217
++ P +E +Q + + K++V D +P I+ ++ + T++ V RID W
Sbjct: 347 VTFPSKEEVQSQGKNAQ--KILVTPWDYRIP-KIRISTQQAE-TLQDFRVVVRIDSWEST 402
Query: 218 SPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPC----VPWEVPQEEL 273
S +P H + V GR G++E +I IL EN+I FS + +P PW+V EE
Sbjct: 403 SVYPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEE 462
Query: 274 LSRKDLR-NFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 332
RKDLR + +F+IDP D+DD LS+ L++G +GVHIADV++FV P + +DIEA
Sbjct: 463 QKRKDLRKSHLVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEA 522
Query: 333 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVI 391
+ R+T+ Y+ R+ MLP +LS ++ SL GVDR A SI W+L+ A + + W GRT+I
Sbjct: 523 RTRATTYYLADRRYDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTII 582
Query: 392 RSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDK 451
RS KL YE AQ+++DG V + + Q + ++V +I L ++++ ++ K
Sbjct: 583 RSAYKLFYEAAQELLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAK 642
Query: 452 RFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 511
R GAL LE + D+ +D + +++ E M+LAN A+ I +FP
Sbjct: 643 RDGCGALELEGVEVCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPH 702
Query: 512 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 571
ALLR+HP P+ E G +DT S+ SL+ A + D ++ +L +
Sbjct: 703 QALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDP--HDPIVNRLLRS 760
Query: 572 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
AT+ M A YF +G ++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 761 MATQAMSNALYFSTGSCAEE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 56 (24.8 bits), Expect = 6.0e-77, Sum P(3) = 6.0e-77
Identities = 15/79 (18%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYI 742
L + H N+R A ++ + +L+ + K K E +S+ + ++ + ++I
Sbjct: 833 LEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFI 892
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL++
Sbjct: 893 PRFGIKGAAYLKNKDGLVI 911
Score = 49 (22.3 bits), Expect = 6.0e-77, Sum P(3) = 6.0e-77
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 116 PTGRVVSIIERSPRRDGIVGF 136
PTGRVV I++++ RD +V F
Sbjct: 330 PTGRVVGILQKN-WRDYVVTF 349
>UNIPROTKB|Q5R5N8 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9601 "Pongo
abelii" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0000175 GO:GO:0000177 CTD:115752 HOGENOM:HOG000191945
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:CR860819
RefSeq:NP_001126723.1 UniGene:Pab.8044 ProteinModelPortal:Q5R5N8
GeneID:100173724 KEGG:pon:100173724 Uniprot:Q5R5N8
Length = 1054
Score = 706 (253.6 bits), Expect = 3.4e-76, Sum P(3) = 3.4e-76
Identities = 172/480 (35%), Positives = 265/480 (55%)
Query: 160 LSVPDREYIQLTPTHPKYPKMVVLVKD--LPDSIKKRLEEGDATIEMELVAARIDEWNEE 217
++ P +E +Q + + K++V D +P I+ ++ + T++ V RID W
Sbjct: 347 VTFPSKEEVQSQGKNAQ--KILVTPWDYRIP-KIRISTQQAE-TLQDFRVVVRIDSWEST 402
Query: 218 SPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEEL 273
S +P H + V GR G++E +I IL EN+I FS + +P PW+V EE
Sbjct: 403 SVYPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPENPWKVSPEEE 462
Query: 274 LSRKDLR-NFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 332
RKDLR + +F+IDP D+DD LS+ L++G +GVHIADV++FV P + +DIEA
Sbjct: 463 QKRKDLRKSHLVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEA 522
Query: 333 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVI 391
+ R+T+ Y+ R+ MLP +LS ++ SL GVDR A SI W+L+ A + + W GRT+I
Sbjct: 523 RTRATTYYLADRRYDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTII 582
Query: 392 RSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDK 451
RS KL YE AQ+++DG V + + Q + ++V +I L ++++ ++ K
Sbjct: 583 RSAYKLFYEAAQELLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAK 642
Query: 452 RFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 511
R GAL LE + D+ +D + +++ E M+LAN A+ I +FP
Sbjct: 643 RDGCGALELEGVEVRVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPH 702
Query: 512 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 571
ALLR+HP P+ E G +DT S+ SL+ A D ++ +L +
Sbjct: 703 QALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANGP--HDPIVNRLLRS 760
Query: 572 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
AT+ M A YF +G ++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 761 MATQAMSNALYFSTGSCAEE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 57 (25.1 bits), Expect = 3.4e-76, Sum P(3) = 3.4e-76
Identities = 15/79 (18%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYI 742
L + H N+R A ++ + +L+ + K K E +S+ + ++ + ++I
Sbjct: 833 LEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRANGVLVFI 892
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL++
Sbjct: 893 PRFGIKGAAYLKNKDGLVI 911
Score = 49 (22.3 bits), Expect = 3.4e-76, Sum P(3) = 3.4e-76
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 116 PTGRVVSIIERSPRRDGIVGF 136
PTGRVV I++++ RD +V F
Sbjct: 330 PTGRVVGILQKN-WRDYVVTF 349
>RGD|1308959 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S. cerevisiae)-like"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO;ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0019899 "enzyme binding" evidence=IEA;ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 RGD:1308959
GO:GO:0005886 GO:GO:0005813 GO:GO:0003723 GO:GO:0016075
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 OrthoDB:EOG4229HZ
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BC085932 IPI:IPI00366657 RefSeq:NP_001008381.1
UniGene:Rn.24884 ProteinModelPortal:Q5U2P0 STRING:Q5U2P0
PRIDE:Q5U2P0 Ensembl:ENSRNOT00000014071 GeneID:363077
KEGG:rno:363077 UCSC:RGD:1308959 InParanoid:Q5U2P0 NextBio:682358
Genevestigator:Q5U2P0 Uniprot:Q5U2P0
Length = 1054
Score = 707 (253.9 bits), Expect = 2.9e-75, Sum P(3) = 2.9e-75
Identities = 168/480 (35%), Positives = 267/480 (55%)
Query: 160 LSVPDREYIQLTPTHPKYPKMVVLVKD--LPDSIKKRLEEGDATIEMELVAARIDEWNEE 217
++ P +E +Q + + K++V D +P I+ ++ +A + +V RID W
Sbjct: 347 VTFPSKEEVQSQGKNAQ--KILVTPWDYRIP-KIRISTQQAEALQDFRVVV-RIDSWETT 402
Query: 218 SPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEEL 273
S +P H + V GR G++E +I IL EN+I FS + +P PW+V +E
Sbjct: 403 SVYPNGHFVRVLGRIGDLEGEIATILVENSINVVPFSEAQMCEMPVNTAENPWKVSPKEE 462
Query: 274 LSRKDLRN-FCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 332
R+DLR+ +F+IDP D+DDALS+ L++G +GVHIADV++FV P + +D+EA
Sbjct: 463 QERRDLRSTHLVFSIDPKGCEDVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEA 522
Query: 333 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVI 391
+ R+T+ Y+ R+ MLP +LS ++ SL GVDR A S+ W+L+ + + W GRT+I
Sbjct: 523 RTRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTII 582
Query: 392 RSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDK 451
RS KL YE AQ+++DG F + + + Q + ++V +I L ++++ ++ K
Sbjct: 583 RSAYKLFYEAAQELLDGNFSIVDDIPEFKTLEEQNRQAKLEELVWAIGKLTDIARHIRAK 642
Query: 452 RFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 511
R GAL LE + D+ +D + +++ E M+LAN A+ I +FP
Sbjct: 643 RDRCGALELEGVEVRVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPH 702
Query: 512 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 571
ALLR+HP P+ E G +DT S+ SL+ A + D ++ +L +
Sbjct: 703 QALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDP--SDPLVNKLLRS 760
Query: 572 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
AT+ M A YF +G ++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 761 MATQAMSNALYFSTGSCAEE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 49 (22.3 bits), Expect = 2.9e-75, Sum P(3) = 2.9e-75
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 116 PTGRVVSIIERSPRRDGIVGF 136
PTGRVV I++++ RD +V F
Sbjct: 330 PTGRVVGILQKN-WRDYVVTF 349
Score = 47 (21.6 bits), Expect = 2.9e-75, Sum P(3) = 2.9e-75
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVL-----ALGPRFMTIYI 742
L + H N+R A + + +L+ + K ++ E V+ ++ + ++I
Sbjct: 833 LEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDPETEERCVVDGIIYSIRTNGVLVFI 892
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL++
Sbjct: 893 PRFGIKGAAYLKNKDGLVI 911
>UNIPROTKB|Q0P4R5 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InterPro:IPR022966 PROSITE:PS01175 EMBL:BC121935
RefSeq:NP_001072835.1 UniGene:Str.52789 ProteinModelPortal:Q0P4R5
STRING:Q0P4R5 GeneID:780296 KEGG:xtr:780296 Xenbase:XB-GENE-1013178
Uniprot:Q0P4R5
Length = 1039
Score = 699 (251.1 bits), Expect = 3.3e-75, Sum P(3) = 3.3e-75
Identities = 169/427 (39%), Positives = 236/427 (55%)
Query: 207 VAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPC--- 263
V RID W S +P H + V GR G +E +I IL EN+I + FS L+ +P
Sbjct: 386 VVVRIDSWESTSLYPNGHFVRVLGRTGNLEAEIATILVENSISVNPFSEAQLAEMPSNTP 445
Query: 264 -VPWEVPQEELLSRKDLRN-FCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYF 321
PW+V EE R DLR +F+IDP D+DDALSI +L G +GVHIADV++F
Sbjct: 446 ESPWQVKPEEG-DRLDLRKTHLVFSIDPKGCEDVDDALSIRKLPSGHLELGVHIADVTHF 504
Query: 322 VLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDV 381
V P T DIEA+ R+T+ Y+ R+ MLP++LS ++ SL GVDR A S+ W+++S+
Sbjct: 505 VPPNTYTDIEARSRATTYYLADRRYDMLPLILSADLCSLLGGVDRYAVSVIWEMDSSTYE 564
Query: 382 VDR-WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKS 440
+ R W GRT+IRS KLSYE AQ ++DG D+E NT E P ++ ++
Sbjct: 565 IRRVWYGRTIIRSSYKLSYEVAQQLMDG--DLEPLNTEMELHPLKQDPVRLEQLLWAVGK 622
Query: 441 LYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKT 500
L EV+ + +R GAL LE + E + D V ++ E M+LAN
Sbjct: 623 LTEVAHATRMRRDMSGALELEGVEVRVQLGEKHSIDDLVPKQPLQMHETIAECMILANHW 682
Query: 501 AAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLK 560
A+ I +P ALLR HP +E + G +DT S+ SL+QA +
Sbjct: 683 VAKKIWECYPQHALLRLHPPARQEFFQELKECAKARGFSIDTRSNKALADSLDQANDP-- 740
Query: 561 DDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVH 620
D ++ +L AT+ M A YF +G + +D ++ HY LA YTHFTSP+RRY D+VVH
Sbjct: 741 SDPLVNQLLRMMATQAMSNARYFSTGSYTED-EFYHYGLALEKYTHFTSPIRRYADIVVH 799
Query: 621 RTLNAAL 627
R L AA+
Sbjct: 800 RLLLAAV 806
Score = 55 (24.4 bits), Expect = 3.3e-75, Sum P(3) = 3.3e-75
Identities = 14/79 (17%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEV-----LLSEARVLALGPRFMTIYI 742
L + H N R A ++ + +L+ + K K+ +S+A + + + +++
Sbjct: 820 LEELCRHINVRNRAAQHCQKQSTELFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFL 879
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y ++GL++
Sbjct: 880 PRYGIKGAAYLKNIDGLVL 898
Score = 48 (22.0 bits), Expect = 3.3e-75, Sum P(3) = 3.3e-75
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 116 PTGRVVSIIERSPRRDGIVGF 136
PTGRVV I++R+ RD + F
Sbjct: 324 PTGRVVGILQRN-WRDYVATF 343
>MGI|MGI:2143272 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:10090 "Mus musculus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 MGI:MGI:2143272 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
OrthoDB:EOG4229HZ InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
EMBL:AK173310 EMBL:AK029974 EMBL:BC056939 IPI:IPI00223964
IPI:IPI00881768 RefSeq:NP_001001295.2 RefSeq:NP_001171255.1
RefSeq:NP_766107.1 UniGene:Mm.268341 ProteinModelPortal:Q8C0S1
SMR:Q8C0S1 STRING:Q8C0S1 PhosphoSite:Q8C0S1 PaxDb:Q8C0S1
PRIDE:Q8C0S1 Ensembl:ENSMUST00000068367 Ensembl:ENSMUST00000113890
Ensembl:ENSMUST00000120760 Ensembl:ENSMUST00000168844 GeneID:213550
KEGG:mmu:213550 UCSC:uc009qbu.2 UCSC:uc009qbw.2
GeneTree:ENSGT00530000063106 InParanoid:Q8C0S1 NextBio:374039
Bgee:Q8C0S1 CleanEx:MM_DIS3L Genevestigator:Q8C0S1 Uniprot:Q8C0S1
Length = 1053
Score = 704 (252.9 bits), Expect = 1.1e-74, Sum P(3) = 1.1e-74
Identities = 170/480 (35%), Positives = 264/480 (55%)
Query: 160 LSVPDREYIQLTPTHPKYPKMVVLVKD--LPDSIKKRLEEGDATIEMELVAARIDEWNEE 217
++ P +E +Q + + K++V D +P I+ ++ +A + +V RID W
Sbjct: 347 VTFPSKEEVQSQGKNAQ--KILVTPWDYRIP-KIRISTQQAEALQDFRVVV-RIDSWEAT 402
Query: 218 SPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEEL 273
S +P H + V GR G++E +I IL EN+I FS + +P PW+V +E
Sbjct: 403 SVYPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMCEMPVNTPENPWKVSPKEE 462
Query: 274 LSRKDLRN-FCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 332
RKDLR +F+IDP D+DD LS+ L++G +GVHIADV++FV P + +D+EA
Sbjct: 463 QERKDLRTTHLVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEA 522
Query: 333 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVI 391
+ R+T+ Y+ R+ MLP +LS ++ SL GVDR A S+ W+L+ + + W GRT+I
Sbjct: 523 RTRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTII 582
Query: 392 RSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDK 451
RS KL YE AQ+++DG F + + + Q + ++V +I L ++++ ++ K
Sbjct: 583 RSAYKLFYEAAQELLDGNFSIVDDIPELKALDKQSQQAKLEELVWAIGKLTDIARHIRAK 642
Query: 452 RFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 511
R GAL LE + D+ D + +++ E M+LAN A+ I +FP
Sbjct: 643 RDRCGALELEGVEVRVQLDDKKNIRDLIPKQPLEVHETVAECMILANHWVAKKIWESFPH 702
Query: 512 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 571
ALLR+HP P+ E G +DT S+ SL+ A + KD V +L +
Sbjct: 703 QALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDP-KDPLVN-KLLRS 760
Query: 572 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
AT+ M A YF +G ++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 761 MATQAMSNALYFSTGSCAEE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 49 (22.3 bits), Expect = 1.1e-74, Sum P(3) = 1.1e-74
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 116 PTGRVVSIIERSPRRDGIVGF 136
PTGRVV I++++ RD +V F
Sbjct: 330 PTGRVVGILQKN-WRDYVVTF 349
Score = 45 (20.9 bits), Expect = 1.1e-74, Sum P(3) = 1.1e-74
Identities = 15/80 (18%), Positives = 35/80 (43%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRF------MTIY 741
L + H N+R A + + +L+ + K ++ +E R +A G + + ++
Sbjct: 833 LEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDAE-TEERCIADGVIYSIRTNGVLVF 891
Query: 742 IEKLAIERRIYYDEVEGLIV 761
I + I+ Y + L++
Sbjct: 892 IPRFGIKGAAYLKNKDSLVI 911
>UNIPROTKB|F1SJJ9 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:CU062652 Ensembl:ENSSSCT00000005453 Uniprot:F1SJJ9
Length = 1057
Score = 709 (254.6 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
Identities = 164/446 (36%), Positives = 246/446 (55%)
Query: 192 KKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCS 251
KK+ E + + V RID W S +P H + V GR G++E +I IL EN+I
Sbjct: 381 KKKEREREREKDFREVV-RIDSWESTSMYPNGHFVRVLGRIGDLEGEIATILVENSISVV 439
Query: 252 GFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPSTATDLDDALSIERLSD 306
FS + +P PW+V EE RKDLR +F+IDP D+DD LS+ L +
Sbjct: 440 PFSEAQMCEMPVNTPENPWKVSSEEERKRKDLRKTHLVFSIDPRGCEDVDDTLSVRALDN 499
Query: 307 GISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDR 366
G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP +LS +V SL GVDR
Sbjct: 500 GNLELGVHIADVTHFVAPHSYIDIEARSRATTYYLADRRYDMLPSILSADVCSLLGGVDR 559
Query: 367 LAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQL 425
A S+ W+L+ ++ + W GRT+IRS KL YE AQ+++DG F +
Sbjct: 560 YAVSVMWELDKTSHEIKNVWYGRTIIRSAYKLFYEAAQELLDGNFSIVDDIPEFRDLDDK 619
Query: 426 YGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGRED 485
Q + ++V +I+ L ++++ ++ KR GAL LE + DE +D + +
Sbjct: 620 SRQAKLEELVWAIRKLTDIARHIRAKRDLCGALELEGVEVRIQLDEKKNIHDLIPKQPLE 679
Query: 486 LNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSS 545
++ E M+LAN A+ I +FP ALLR+HP P+ E G +DT S+
Sbjct: 680 VHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSN 739
Query: 546 GQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYT 605
SL+ A + +D ++ +L + AT+ M A YF +G ++ ++ HY LA YT
Sbjct: 740 KTLADSLDNANDP--NDPIVNKLLRSMATQAMSNALYFSTGSCAEE-EFHHYGLALDKYT 796
Query: 606 HFTSPLRRYPDLVVHRTLNAALEAEK 631
HFTSP+RRY D++VHR L A+ +K
Sbjct: 797 HFTSPIRRYSDIIVHRLLMEAISKDK 822
Score = 58 (25.5 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
Identities = 15/79 (18%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYI 742
L + H N+R A ++ + +L+ + K K E +S+ + ++ + ++I
Sbjct: 836 LEELCKHINNRNRAAQHCQKQSTELFQCMYFKDKDPDTEERCISDGVIYSIRTNGVLVFI 895
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL++
Sbjct: 896 PRFGIKGAAYLKNKDGLVI 914
>UNIPROTKB|F1NKN5 [details] [associations]
symbol:LOC100857630 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AADN02038918 EMBL:AADN02038919
EMBL:AADN02038920 IPI:IPI00571818 Ensembl:ENSGALT00000012364
Uniprot:F1NKN5
Length = 1082
Score = 686 (246.5 bits), Expect = 5.6e-73, Sum P(3) = 5.6e-73
Identities = 169/479 (35%), Positives = 266/479 (55%)
Query: 160 LSVPDREYIQLTPTHPKYPKMVVLVKD--LPDSIKKRLEEGDATIEMELVAARIDEWNEE 217
++ P RE Q + + K++V D +P I+ ++ +A E +V RID W
Sbjct: 372 VTFPSREECQSQGRNAQ--KILVTPWDYRIP-KIRISTQQAEALQEYRVVV-RIDSWEST 427
Query: 218 SPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEEL 273
S +P H + V GR G++E +I AIL EN+I + FS ++ +P PW+V EE
Sbjct: 428 SVYPNGHFVRVLGRIGDLEGEIAAILVENSITVAPFSEIQMNEMPVSSSKNPWKVNPEEE 487
Query: 274 LSRKDLRN-FCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 332
R +LR+ IF+IDP D+DDALS+ L +G +GVHIADV+YFV + DIEA
Sbjct: 488 KKRLNLRDTHLIFSIDPKGCEDVDDALSVRTLPNGNLELGVHIADVTYFVAANSYTDIEA 547
Query: 333 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVI 391
+ R+T+ Y+ R+ MLP +LS ++ SL GVDR A S+ W+L +++ +++I
Sbjct: 548 RARATTYYLADRRYDMLPSVLSADICSLLSGVDRYAVSVLWELERESYEILRVCYNKSII 607
Query: 392 RSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDK 451
RS KL YE AQ ++DG V + + + + S++V +I L ++++ ++ K
Sbjct: 608 RSAYKLVYEVAQGLLDGDTSVVDDILELKDLDERTREKKLSELVWAISKLTDIARHIRAK 667
Query: 452 RFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 511
R + GAL LE + D+ +D + +++ E M+LAN A+ I+ +FP
Sbjct: 668 RDSCGALELEGVEIRVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKISESFPH 727
Query: 512 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 571
ALLR+HP P + + S G +DT S+ +SL++A + L D ++ +L +
Sbjct: 728 QALLRQHPPPRQEFFTDLQECASAKGFAIDTRSNKALAESLDKANDPL--DPIVNKLLRS 785
Query: 572 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAE 630
AT+ M A YF +G ++ ++ HY LA YTHFTSP+RRY D++VHR L AA E
Sbjct: 786 MATQAMSNALYFSTGSCSEE-EFHHYGLALDKYTHFTSPIRRYADIIVHRLLMAAFRKE 843
Score = 53 (23.7 bits), Expect = 5.6e-73, Sum P(3) = 5.6e-73
Identities = 13/73 (17%), Positives = 34/73 (46%)
Query: 694 HCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYIEKLAIE 748
H N+R A ++ + +L+ + K K E +++ + ++ + +++ + I+
Sbjct: 863 HINNRNRAAQHAQKQSTELFQCMYFKDKSPETDERCIADGVIYSIRTNGVLVFVPRYGIK 922
Query: 749 RRIYYDEVEGLIV 761
Y EGL++
Sbjct: 923 GAAYMKNKEGLVL 935
Score = 48 (22.0 bits), Expect = 5.6e-73, Sum P(3) = 5.6e-73
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 116 PTGRVVSIIERSPRRDGIVGF 136
PTG+VV II+++ RD +V F
Sbjct: 355 PTGKVVGIIQKN-WRDYVVTF 374
>UNIPROTKB|I3LEH1 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CU062652
Ensembl:ENSSSCT00000024119 Uniprot:I3LEH1
Length = 1059
Score = 706 (253.6 bits), Expect = 6.9e-73, Sum P(2) = 6.9e-73
Identities = 160/428 (37%), Positives = 239/428 (55%)
Query: 210 RIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV----P 265
RID W S +P H + V GR G++E +I IL EN+I FS + +P P
Sbjct: 400 RIDSWESTSMYPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMCEMPVNTPENP 459
Query: 266 WEVPQEELLSRKDLRN-FCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLP 324
W+V EE RKDLR +F+IDP D+DD LS+ L +G +GVHIADV++FV P
Sbjct: 460 WKVSSEEERKRKDLRKTHLVFSIDPRGCEDVDDTLSVRALDNGNLELGVHIADVTHFVAP 519
Query: 325 GTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVD 383
+ +DIEA+ R+T+ Y+ R+ MLP +LS +V SL GVDR A S+ W+L+ ++ +
Sbjct: 520 HSYIDIEARSRATTYYLADRRYDMLPSILSADVCSLLGGVDRYAVSVMWELDKTSHEIKN 579
Query: 384 RWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 443
W GRT+IRS KL YE AQ+++DG F + Q + ++V +I+ L +
Sbjct: 580 VWYGRTIIRSAYKLFYEAAQELLDGNFSIVDDIPEFRDLDDKSRQAKLEELVWAIRKLTD 639
Query: 444 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAE 503
+++ ++ KR GAL LE + DE +D + +++ E M+LAN A+
Sbjct: 640 IARHIRAKRDLCGALELEGVEVRIQLDEKKNIHDLIPKQPLEVHETVAECMILANHWVAK 699
Query: 504 VIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDY 563
I +FP ALLR+HP P+ E G +DT S+ SL+ A + +D
Sbjct: 700 KIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDP--NDP 757
Query: 564 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 623
++ +L + AT+ M A YF +G ++ ++ HY LA YTHFTSP+RRY D++VHR L
Sbjct: 758 IVNKLLRSMATQAMSNALYFSTGSCAEE-EFHHYGLALDKYTHFTSPIRRYSDIIVHRLL 816
Query: 624 NAALEAEK 631
A+ +K
Sbjct: 817 MEAISKDK 824
Score = 58 (25.5 bits), Expect = 6.9e-73, Sum P(2) = 6.9e-73
Identities = 15/79 (18%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYI 742
L + H N+R A ++ + +L+ + K K E +S+ + ++ + ++I
Sbjct: 838 LEELCKHINNRNRAAQHCQKQSTELFQCMYFKDKDPDTEERCISDGVIYSIRTNGVLVFI 897
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL++
Sbjct: 898 PRFGIKGAAYLKNKDGLVI 916
>UNIPROTKB|Q6GN11 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8355
"Xenopus laevis" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:BC073711
RefSeq:NP_001086021.1 UniGene:Xl.3437 ProteinModelPortal:Q6GN11
GeneID:444450 KEGG:xla:444450 Xenbase:XB-GENE-1013183
Uniprot:Q6GN11
Length = 1040
Score = 676 (243.0 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 170/457 (37%), Positives = 249/457 (54%)
Query: 179 KMVVLVKD--LPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVE 236
K++V+ D +P I+ ++ +A ++ V RID W S +P H + GR G +E
Sbjct: 359 KVLVMPWDYRIP-KIRISTQQAEA-LQNYRVVVRIDSWESNSLYPNGHFVRALGRAGNLE 416
Query: 237 PQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPST 291
+I IL EN+I + FS L+ +P PW+V EE R DLR +F+IDP
Sbjct: 417 AEIATILVENSISLNPFSEAQLAEMPSNTHENPWQVKPEEG-DRLDLRETHLVFSIDPKG 475
Query: 292 ATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPV 351
D+DDALSI L G +GVHIADV++FV T DIEA+ R+T+ Y+ R+ MLP+
Sbjct: 476 CEDVDDALSIRVLPSGDLELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLPL 535
Query: 352 LLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGKF 410
+LS ++ SL VDR A S+ W+++ + + R W GRT+IRS KLSYE AQ ++DG
Sbjct: 536 ILSADLCSLLGAVDRYAVSVIWEMDCSTYEIRRVWYGRTIIRSSYKLSYEVAQQLLDG-- 593
Query: 411 DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD 470
D+E +T E P ++ ++ + EV+ + +R GAL LE +
Sbjct: 594 DLEPLSTEKELHPLKQDPARLQQLLWAVGKMTEVAHATRMRRNMSGALELEGVEVRVQLG 653
Query: 471 EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFE 530
E + D V ++ E M+LAN A+ I ++P ALLR HP P +E +
Sbjct: 654 EKHSIDDLVPKQPLQVHETIAECMILANHWVAKKIWESYPQHALLRLHPPPRQEFFQELK 713
Query: 531 AFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKD 590
G +DT S+ SL+QA + D ++ +L AT+ M A YF +G + +
Sbjct: 714 ECAKARGFSIDTRSNKALADSLDQAHDP--SDPLVNQLLRMMATQAMSNARYFSTGSYTE 771
Query: 591 DTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
D ++ HY LA YTHFTSP+RRY D+VVHR L AA+
Sbjct: 772 D-EFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAV 807
Score = 54 (24.1 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 15/79 (18%), Positives = 34/79 (43%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEV-----LLSEARVLALGPRFMTIYI 742
L + H N R A + + +L+ + K K+ +S+A + + + ++I
Sbjct: 821 LEELCRHINARNRAAQQCQKQSTELFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFI 880
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL++
Sbjct: 881 PRYGIKGAAYLKNTDGLVL 899
Score = 51 (23.0 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 116 PTGRVVSIIERSPRRDGIVGF 136
PTGRVV I++R+ RD +V F
Sbjct: 325 PTGRVVGIMQRN-WRDYVVTF 344
>DICTYBASE|DDB_G0268186 [details] [associations]
symbol:DDB_G0268186 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0268186 EMBL:AAFI02000003
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 RefSeq:XP_647622.1 EnsemblProtists:DDB0189843
GeneID:8616436 KEGG:ddi:DDB_G0268186 InParanoid:Q55FB1 OMA:YMILANS
Uniprot:Q55FB1
Length = 1504
Score = 711 (255.3 bits), Expect = 1.2e-71, Sum P(3) = 1.2e-71
Identities = 167/457 (36%), Positives = 253/457 (55%)
Query: 210 RIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP----CVP 265
R+D W+ S +P H + G G +E +++A++ E+ I + L CLP P
Sbjct: 639 RMDSWDLNSNYPMGHYVSSIGESGSLETELSALMVEHDISLKQWPQSILKCLPESSDQSP 698
Query: 266 WEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPG 325
W++P EE R+ L N I +IDP + D+DDA+SI ++ I +GVHIADVS+FV G
Sbjct: 699 WQIPPEEKAYRRQLTNHHIMSIDPLGSKDIDDAISIGYPTNDIIEIGVHIADVSHFVKEG 758
Query: 326 TALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDL----NSAGDV 381
+ LD+EA+ R T++Y+ R+ MLP +LSE+V SL G+ R A S+ W N ++
Sbjct: 759 SPLDLEAKRRGTTIYLPDRRFDMLPAVLSEDVCSLRGGLPRCAMSVVWQFKRNPNKTYEI 818
Query: 382 VDRWIGRTVIRSCCKLSYEHAQDIIDGKF----DVESSNTLG---EGWP-QLYGQFEWSD 433
VD W GRT+I S +L Y+ AQDIIDGK D +S T G G+ +++ SD
Sbjct: 819 VDTWFGRTIIHSSAELHYQLAQDIIDGKIVDGKDKDSDVTGGGARAGYKHRIFNGITISD 878
Query: 434 VVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD--EYGTPYDSVLSGREDLNFLFE 491
+ + + L + + LK +R +GAL LE+ + F F+ + P +L +++ L
Sbjct: 879 IKKDLLELCSIFRQLKKERVKNGALELESIEVRFKFNSKDSSQPKKIILKNDLEIHHLVA 938
Query: 492 EFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQS 551
E+M+LAN A I FP SALLRRHP PN + +++ S G QL T ++ Q +S
Sbjct: 939 EYMILANSHVATKIHSVFPSSALLRRHPKPNQIDFKSIKSYFSYCGFQLLTKTNKQLQES 998
Query: 552 LEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPL 611
L A + D YV IL + A YF +G + +++ HY LA YTHFTSP+
Sbjct: 999 LASAVDSGGDVYVN-KILKLKIVNVVSEAVYFSTGSV-NVSEFYHYGLAIDKYTHFTSPI 1056
Query: 612 RRYPDLVVHRTL-NAALEAEKLYWKHRRMLPKNNHRE 647
RRY D++VHR L N+ ++ + ++ NN+ +
Sbjct: 1057 RRYSDIIVHRQLWNSLNQSNGKFGGKSSIIDNNNNND 1093
Score = 42 (19.8 bits), Expect = 1.2e-71, Sum P(3) = 1.2e-71
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 114 KRPTGRVVSIIERSPR 129
K PTG+V+ I +R+ R
Sbjct: 577 KIPTGKVIGIFQRNWR 592
Score = 37 (18.1 bits), Expect = 1.2e-71, Sum P(3) = 1.2e-71
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 31 KSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYIN 76
+++ + Y +SN L E + D+ ++ E + ++I + YIN
Sbjct: 297 QTEKSICY-FSN-ELFIETFLDRDNSTNLEIHQNKIISKAVQWYIN 340
>FB|FBgn0035111 [details] [associations]
symbol:CG16940 species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
[GO:0008859 "exoribonuclease II activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:AE014296 GO:GO:0003723 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 GO:GO:0008859
EMBL:BT044564 RefSeq:NP_728490.1 UniGene:Dm.29548 SMR:Q8IRJ7
EnsemblMetazoa:FBtr0072486 GeneID:38034 KEGG:dme:Dmel_CG16940
UCSC:CG16940-RC FlyBase:FBgn0035111 InParanoid:Q8IRJ7 OMA:LESGHVI
OrthoDB:EOG46M912 GenomeRNAi:38034 NextBio:806667 Uniprot:Q8IRJ7
Length = 1044
Score = 721 (258.9 bits), Expect = 5.8e-71, P = 5.8e-71
Identities = 161/410 (39%), Positives = 230/410 (56%)
Query: 223 AHVLHVFGRGGEVEPQINAILYENAIC-CSGFSPESLSCLPCVPWEVPQEELLSRKDLRN 281
A ++ GR G ++ ++ AIL+ N + F + P + QE+L RKDLR
Sbjct: 506 AELIQPVGRVGNLDDELKAILFHNGLRDIKPFEQRFIDIYSQPPPPISQEDLRQRKDLRK 565
Query: 282 FCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYM 341
CIFTIDP TA DLDDA+SIE+L D +GVHI+DVS+F++ LD + RSTS+Y+
Sbjct: 566 MCIFTIDPMTARDLDDAVSIEKLGDNEYEIGVHISDVSHFLIEDNELDNIVKERSTSIYL 625
Query: 342 LQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW--IGRTVIRSCCKLSY 399
I MLP L SL PG D+ AFS+FW +N G ++ + RTVI SC + +Y
Sbjct: 626 ANEVIHMLPQSLCMRC-SLLPGQDKFAFSVFWRMNGKGVMLQKKPEFCRTVINSCSQFAY 684
Query: 400 EHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALR 459
EHAQ IID + + N +P + F D+ + L++++ ++ R +GAL
Sbjct: 685 EHAQKIIDNPNERFTEND----FPTILNGFNPDDIRNRVLWLHDIASSIRKTRLDNGALT 740
Query: 460 LENSKPVFLFDEY-GTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRH 518
+ N+K FL D G P + + + N L EEFMLLAN+ A I +FPD A+LR H
Sbjct: 741 INNAKLRFLLDPITGEPLSFEVEKQREANRLIEEFMLLANQAVARFIHDSFPDIAVLRNH 800
Query: 519 PAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQ 578
P P ++ L+ G +LD SSS +S+ + + + + L +PM
Sbjct: 801 PPPLIKSLKALREKLLALGFELDYSSSKALQESMVRLCNEAPNPVAMNACLSQLLMKPMA 860
Query: 579 LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
A+YFCS + D HYAL+ P+YTHFTSP+RRYPD++VHR L AAL+
Sbjct: 861 RATYFCSEGKSEPADLWHYALSIPIYTHFTSPIRRYPDILVHRLLAAALK 910
>ZFIN|ZDB-GENE-070209-95 [details] [associations]
symbol:dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070209-95 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CABZ01003662 IPI:IPI00493157
ProteinModelPortal:F1Q9I9 Ensembl:ENSDART00000075176 Bgee:F1Q9I9
Uniprot:F1Q9I9
Length = 1057
Score = 660 (237.4 bits), Expect = 2.2e-70, Sum P(3) = 2.2e-70
Identities = 168/464 (36%), Positives = 258/464 (55%)
Query: 179 KMVVLVKD--LPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVE 236
K++V+ D +P I+ ++ +A ++ + V R+D W S +P H + V G+ GE+E
Sbjct: 358 KILVVPWDYRIP-KIRISTQQAEA-LQDQRVIVRLDSWESTSVYPNGHFVRVLGKSGELE 415
Query: 237 PQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPST 291
+I IL EN I FS L +P PW++ E+ SR+DLR+ +F+IDP
Sbjct: 416 TEIQTILVENCIHVPPFSEAQLREMPVNTEENPWQMDSNEVSSRRDLRDSHLVFSIDPKG 475
Query: 292 ATDLDDALSIERLSDGISRV--GVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPML 349
D+DD LS+ R G R+ GVHIADV++FV G+ D+EA+ R+T+ Y+ R+ ML
Sbjct: 476 CEDVDDTLSV-RTQPGGKRLELGVHIADVTHFVREGSLTDLEARSRATTYYLADRRYDML 534
Query: 350 PVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDG 408
P +LS ++ SL GVDR A S+ W+L++ +V W GRT+IRS +L YE AQ +++G
Sbjct: 535 PAVLSADLCSLLGGVDRYAMSVLWELDAETLEVCSVWFGRTLIRSSYQLHYELAQSLLNG 594
Query: 409 K-FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVF 467
+ +V N L +G + Q + S++++++++L V++ L+ +R GAL LE +
Sbjct: 595 EEVEVPELNPL-KGSQR--DQ-KMSELLQALETLTRVARHLRAQRDKGGALELEGVEVRA 650
Query: 468 LFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLR 527
DE V +++ E M+ AN A I +FP ALLR HP P
Sbjct: 651 QLDEEKNITALVPKQPLEVHETVAECMIYANHWVARKIQESFPHHALLRHHPPPKQEFFN 710
Query: 528 EFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGD 587
HG +DT S+ SLE+A + D ++ +L AT+ M A YF +G
Sbjct: 711 HLIDSAKAHGFSIDTRSNRALADSLERAVDPR--DPLVNRLLRMMATQAMSNALYFSTGS 768
Query: 588 FKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
++ + HY LA YTHFTSP+RRY D++VHR L AA++ EK
Sbjct: 769 CPEE-QYYHYGLALARYTHFTSPIRRYADVIVHRLLMAAVQLEK 811
Score = 55 (24.4 bits), Expect = 2.2e-70, Sum P(3) = 2.2e-70
Identities = 14/83 (16%), Positives = 39/83 (46%)
Query: 684 CADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFM 738
C L +A H N++ A ++ + ++L+ + + K E +++A + A+
Sbjct: 821 CNKELEELAQHINNKNRAAQHSQKQSIELFQCMYFRDKDSHTDERCVADAVIYAVRANGF 880
Query: 739 TIYIEKLAIERRIYYDEVEGLIV 761
++ + ++ +Y + EG ++
Sbjct: 881 LAFVPQYGLKGAVYLKDREGQVI 903
Score = 48 (22.0 bits), Expect = 2.2e-70, Sum P(3) = 2.2e-70
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 116 PTGRVVSIIERSPRRDGIV 134
PTGRVV I++R+ RD +V
Sbjct: 324 PTGRVVGILQRN-WRDYVV 341
>UNIPROTKB|G3V1J5 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 InterPro:IPR022966 PROSITE:PS01175
EMBL:CH471093 EMBL:AL391384 UniGene:Hs.740506 HGNC:HGNC:20604
ChiTaRS:DIS3 ProteinModelPortal:G3V1J5 SMR:G3V1J5
Ensembl:ENST00000545453 ArrayExpress:G3V1J5 Bgee:G3V1J5
Uniprot:G3V1J5
Length = 796
Score = 416 (151.5 bits), Expect = 7.5e-67, Sum P(3) = 7.5e-67
Identities = 87/215 (40%), Positives = 127/215 (59%)
Query: 194 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A T+E + ID W S +P H + G GE E + +L E+ +
Sbjct: 222 RIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQP 281
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + ++++ +R+DLR+ CI ++DP TD+DDAL L +G VG
Sbjct: 282 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVG 341
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDRLAFS
Sbjct: 342 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCI 401
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
W++N +++ ++VI S L+Y AQ ID
Sbjct: 402 WEMNHNAEILKTKFTKSVINSKASLTYAEAQLRID 436
Score = 336 (123.3 bits), Expect = 7.5e-67, Sum P(3) = 7.5e-67
Identities = 90/245 (36%), Positives = 126/245 (51%)
Query: 395 CKLSYEHAQDIIDGKF-----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
C H +I+ KF + ++S T E ++ D+ S++ L +++KILK
Sbjct: 400 CIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILK 459
Query: 450 DKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
+R GAL L + + F D E P D + N + EEFMLLAN + A+ I
Sbjct: 460 KRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEE 519
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 568
F + ALLR+HPAP L++ T ++ +SL+QA E Y L +
Sbjct: 520 FSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQA-ESPTFPY-LNTL 577
Query: 569 LINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
L ATR M A YFCSG D D+ HY LA P+YTHFTSP+RRY D++VHR L A+
Sbjct: 578 LRILATRCMMQAVYFCSGM---DNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIG 634
Query: 629 AEKLY 633
A+ Y
Sbjct: 635 ADCTY 639
Score = 52 (23.4 bits), Expect = 7.5e-67, Sum P(3) = 7.5e-67
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 102 ERLSAMISSYPTKRPTGRVVSIIERSPR 129
ER+ S +PTGRVV II+R+ R
Sbjct: 165 ERMLKTAVSEKMLKPTGRVVGIIKRNWR 192
>UNIPROTKB|Q9Y2L1 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0000178 "exosome (RNase complex)" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IMP]
[GO:0004519 "endonuclease activity" evidence=IMP] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005829 GO:GO:0005654 GO:GO:0003723
GO:GO:0005085 GO:GO:0004519 GO:GO:0016075 GO:GO:0006364
EMBL:AL138695 GO:GO:0000176 GO:GO:0000175 GO:GO:0043928
eggNOG:COG0557 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 OMA:MPWSITE SMART:SM00670 EMBL:CH471093
GO:GO:0071034 EMBL:AL391384 EMBL:AF330044 EMBL:AB023225
EMBL:AL832266 EMBL:AK314715 EMBL:AL080158 EMBL:BC056143
IPI:IPI00183462 IPI:IPI00746351 PIR:JE0110 RefSeq:NP_001121698.1
RefSeq:NP_055768.3 UniGene:Hs.740506 ProteinModelPortal:Q9Y2L1
SMR:Q9Y2L1 IntAct:Q9Y2L1 STRING:Q9Y2L1 PhosphoSite:Q9Y2L1
DMDM:73620993 SWISS-2DPAGE:Q9Y2L1 PaxDb:Q9Y2L1 PRIDE:Q9Y2L1
Ensembl:ENST00000377767 Ensembl:ENST00000377780 GeneID:22894
KEGG:hsa:22894 UCSC:uc001vix.4 UCSC:uc001viy.4 CTD:22894
GeneCards:GC13M073329 H-InvDB:HIX0011365 HGNC:HGNC:20604
HPA:HPA039281 MIM:607533 neXtProt:NX_Q9Y2L1 PharmGKB:PA162383628
InParanoid:Q9Y2L1 OrthoDB:EOG45B1DT PhylomeDB:Q9Y2L1 ChiTaRS:DIS3
GenomeRNAi:22894 NextBio:43511 ArrayExpress:Q9Y2L1 Bgee:Q9Y2L1
CleanEx:HS_DIS3 Genevestigator:Q9Y2L1 GermOnline:ENSG00000083520
Uniprot:Q9Y2L1
Length = 958
Score = 416 (151.5 bits), Expect = 3.6e-66, Sum P(3) = 3.6e-66
Identities = 87/215 (40%), Positives = 127/215 (59%)
Query: 194 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A T+E + ID W S +P H + G GE E + +L E+ +
Sbjct: 384 RIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQP 443
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + ++++ +R+DLR+ CI ++DP TD+DDAL L +G VG
Sbjct: 444 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVG 503
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDRLAFS
Sbjct: 504 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCI 563
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
W++N +++ ++VI S L+Y AQ ID
Sbjct: 564 WEMNHNAEILKTKFTKSVINSKASLTYAEAQLRID 598
Score = 336 (123.3 bits), Expect = 3.6e-66, Sum P(3) = 3.6e-66
Identities = 90/245 (36%), Positives = 126/245 (51%)
Query: 395 CKLSYEHAQDIIDGKF-----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
C H +I+ KF + ++S T E ++ D+ S++ L +++KILK
Sbjct: 562 CIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILK 621
Query: 450 DKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
+R GAL L + + F D E P D + N + EEFMLLAN + A+ I
Sbjct: 622 KRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEE 681
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 568
F + ALLR+HPAP L++ T ++ +SL+QA E Y L +
Sbjct: 682 FSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQA-ESPTFPY-LNTL 739
Query: 569 LINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
L ATR M A YFCSG D D+ HY LA P+YTHFTSP+RRY D++VHR L A+
Sbjct: 740 LRILATRCMMQAVYFCSGM---DNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIG 796
Query: 629 AEKLY 633
A+ Y
Sbjct: 797 ADCTY 801
Score = 52 (23.4 bits), Expect = 3.6e-66, Sum P(3) = 3.6e-66
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 102 ERLSAMISSYPTKRPTGRVVSIIERSPR 129
ER+ S +PTGRVV II+R+ R
Sbjct: 327 ERMLKTAVSEKMLKPTGRVVGIIKRNWR 354
>UNIPROTKB|F1RHF7 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005654
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:MPWSITE GO:GO:0071034
EMBL:FP101966 Ensembl:ENSSSCT00000010370 Uniprot:F1RHF7
Length = 752
Score = 417 (151.9 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 85/215 (39%), Positives = 127/215 (59%)
Query: 194 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A T+E + ID W S +P H + G G+ E + +L E+ +
Sbjct: 178 RIETRQASTLEGRRIIVSIDGWPRNSRYPNGHFVKNLGEVGDKETETEVLLLEHDVPHQP 237
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + ++++ +R+DLR+ C+ ++DP TD+DDAL L +G VG
Sbjct: 238 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELENGDLEVG 297
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDRLAFS
Sbjct: 298 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCI 357
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
W++N +++ ++VI S L+Y AQ ID
Sbjct: 358 WEMNHNAEILKTRFTKSVINSKASLTYAEAQMRID 392
Score = 317 (116.6 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 85/245 (34%), Positives = 123/245 (50%)
Query: 395 CKLSYEHAQDIIDGKF-----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
C H +I+ +F + ++S T E ++ + S++ L +++KILK
Sbjct: 356 CIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDSITASLRGLNKLAKILK 415
Query: 450 DKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
+R GAL L + + F D E P D + N + EEFMLLAN + A+ I
Sbjct: 416 KRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEE 475
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 568
F + ALLR+HPAP L++ T ++ SL++ + Y L +
Sbjct: 476 FSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKALADSLDRVDSPIFP-Y-LNTL 533
Query: 569 LINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
L ATR M A YFCSG D D+ HY LA P+YTHFTSP+RRY D++VHR L A+
Sbjct: 534 LRILATRCMMQAVYFCSGM---DNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIG 590
Query: 629 AEKLY 633
A+ Y
Sbjct: 591 ADCTY 595
Score = 50 (22.7 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 21/88 (23%), Positives = 36/88 (40%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAI 747
L ++ + N R + + A V + + K K ++ EA +L + + + I K +
Sbjct: 604 LADLCKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKNAIVVLIPKYGL 663
Query: 748 E-------------RRIYYDEVEGLIVE 762
E R IY DEV L +E
Sbjct: 664 EGTVFFEEKDKPKPRLIYDDEVPSLKIE 691
Score = 49 (22.3 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 115 RPTGRVVSIIERSPR 129
+PTGRVV II+R+ R
Sbjct: 134 KPTGRVVGIIKRNWR 148
>ZFIN|ZDB-GENE-080213-3 [details] [associations]
symbol:dis3 "DIS3 mitotic control homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
ZFIN:ZDB-GENE-080213-3 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 SMART:SM00670 CTD:22894 EMBL:BX571717 IPI:IPI00803594
RefSeq:XP_001336850.2 UniGene:Dr.51536 ProteinModelPortal:E7FE01
Ensembl:ENSDART00000085454 GeneID:100003553 KEGG:dre:100003553
NextBio:20785882 Bgee:E7FE01 Uniprot:E7FE01
Length = 950
Score = 412 (150.1 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 84/208 (40%), Positives = 122/208 (58%)
Query: 200 ATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLS 259
AT+ + + ID W + S +P H + G G+ E + +L E+ + FS LS
Sbjct: 388 ATLIGQRIMVAIDGWPKNSRYPNGHFVKNLGTAGDKETETEVLLLEHDVPHQPFSQAVLS 447
Query: 260 CLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVS 319
LP +PW + +E+L R DLR+ C+ ++DP TD+DDAL L +G VGVHIADVS
Sbjct: 448 FLPKMPWGITEEDLKVRADLRHLCVCSVDPPGCTDIDDALHCRELENGNLEVGVHIADVS 507
Query: 320 YFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG 379
+F+ PG ALD EA R T+VY+ ++I M+P LLS + SL V+RLAFS W++N
Sbjct: 508 HFIRPGNALDQEAANRGTTVYLCGKRIDMVPELLSSNLCSLRSNVERLAFSCIWEMNHKA 567
Query: 380 DVVDRWIGRTVIRSCCKLSYEHAQDIID 407
+++ ++VI S L+Y AQ ID
Sbjct: 568 EIIKTHFTKSVINSKASLTYAEAQMRID 595
Score = 335 (123.0 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 92/261 (35%), Positives = 132/261 (50%)
Query: 395 CKLSYEHAQDIIDGKF-----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
C H +II F + ++S T E ++ D+ +S++ L +++KILK
Sbjct: 559 CIWEMNHKAEIIKTHFTKSVINSKASLTYAEAQMRIDDTTMNDDITKSLRGLNKLAKILK 618
Query: 450 DKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
+R GAL L + + F D E P D + N + EEFMLLAN + A+ I
Sbjct: 619 AQRIDKGALTLSSPEVRFHIDSETHDPIDLQTKELMETNSMVEEFMLLANISVAQKIYDE 678
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 568
F + ALLR+HPAP L++ T S+ SL A +++ F+
Sbjct: 679 FSECALLRKHPAPPPSNYDILIKAAKSRDLEIHTDSAKALADSLNNATI---ENFAYFNT 735
Query: 569 LINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
L+ ATR M A YFCSG D+D+ HY LA P+YTHFTSP+RRY D++VHR L A+
Sbjct: 736 LLRILATRCMMQAVYFCSGM---DSDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAI 792
Query: 628 EAEKLYW----KHRRMLPKNN 644
A+ Y KH++ NN
Sbjct: 793 NADSTYPDLMDKHKQSALCNN 813
Score = 55 (24.4 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 103 RLSAMISSYPTKRPTGRVVSIIERSPR 129
+L ++ S +PTGRVV II+R+ R
Sbjct: 325 KLKSVASESSVLKPTGRVVGIIKRNWR 351
>DICTYBASE|DDB_G0293614 [details] [associations]
symbol:DDB_G0293614 "putative exoribonuclease"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0293614 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AAFI02000218 GO:GO:0000176 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
SMART:SM00670 RefSeq:XP_629050.1 ProteinModelPortal:Q54BH9
STRING:Q54BH9 EnsemblProtists:DDB0234145 GeneID:8629340
KEGG:ddi:DDB_G0293614 InParanoid:Q54BH9 ProtClustDB:CLSZ2429248
Uniprot:Q54BH9
Length = 1006
Score = 432 (157.1 bits), Expect = 1.5e-65, Sum P(3) = 1.5e-65
Identities = 107/292 (36%), Positives = 156/292 (53%)
Query: 122 SIIERSPRRDGIVGFLNVNQWFNYKGGSR-KDAKKNRSSLSVPDREYIQLTPTHPKYPKM 180
S+I + +VG + N W Y G K N ++ + ++ P + PK+
Sbjct: 326 SLISKKQPTGKVVGIIKRN-WKPYCGAVEFKQDDNNTTTKTSTGLHFLYFMPIDKRIPKI 384
Query: 181 VVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQIN 240
+ + + + I KR+ +VA ID+W++ S +P H + G G+ E +
Sbjct: 385 RIKSRQVSNLIGKRI----------VVA--IDQWDKNSKYPSGHFVKDLGPLGDKETESQ 432
Query: 241 AILYENAICCSGFSPESLSCLPC--VPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDA 298
+L + I F + CLP + V +++ RKDLR CIF++DP TD+DDA
Sbjct: 433 VLLLQFDIPHHPFGAAVMKCLPSPDIMDRVTSADMVGRKDLRKECIFSVDPPGCTDIDDA 492
Query: 299 LSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVG 358
L I+ L GI VGVHIADVS+FV GTA+D EA RSTSVY++ R+I MLP LS +
Sbjct: 493 LHIKDLGKGIMEVGVHIADVSHFVQEGTAIDEEAANRSTSVYLVDRRIDMLPGELSGNLC 552
Query: 359 SLNPGVDRLAFSIFWDLNS-AGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 409
SL VDR AFS W +N G+++ +++IRSC L+YE AQ ID K
Sbjct: 553 SLMSNVDRFAFSCIWKINQHTGEIIAVEYTKSIIRSCASLTYEQAQIRIDDK 604
Score = 326 (119.8 bits), Expect = 1.5e-65, Sum P(3) = 1.5e-65
Identities = 77/193 (39%), Positives = 108/193 (55%)
Query: 437 SIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG-TPYDSVLSGREDLNFLFEEFML 495
++++L ++KIL+ +RF GAL L + + F +E G P D + + N + EEFML
Sbjct: 613 NLRNLNSLAKILRKQRFDRGALYLASPQVKFKTEELGGDPSDVEIYQLRETNSMIEEFML 672
Query: 496 LANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQA 555
LAN A+ I + FP A+LRRHP PN G + T++S SL+ A
Sbjct: 673 LANIWVAKKIYKHFPGCAMLRRHPTPNKAAFDLLTKLIENKGYKFSTTTSKDLADSLDSA 732
Query: 556 REKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRY 614
+K D Y F+ L TR M A YF SG + D+ HY LA +YTHFTSP+RRY
Sbjct: 733 VDK-NDSY--FNTLCRIMTTRCMSPAKYFSSGSLPYE-DFNHYGLATDIYTHFTSPIRRY 788
Query: 615 PDLVVHRTLNAAL 627
PD++VHR L +A+
Sbjct: 789 PDIIVHRLLASAI 801
Score = 61 (26.5 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 24/103 (23%), Positives = 44/103 (42%)
Query: 94 QNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSR-KD 152
+N+G+ + A S K+PTG+VV II+R+ W Y G K
Sbjct: 311 ENEGVEEDDDSIAKDSLISKKQPTGKVVGIIKRN--------------WKPYCGAVEFKQ 356
Query: 153 AKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRL 195
N ++ + ++ P + PK+ + + + + I KR+
Sbjct: 357 DDNNTTTKTSTGLHFLYFMPIDKRIPKIRIKSRQVSNLIGKRI 399
Score = 40 (19.1 bits), Expect = 1.5e-65, Sum P(3) = 1.5e-65
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 41 SNCTLLSEKGIHHDDDS 57
S +L +G+ DDDS
Sbjct: 305 STLIMLENEGVEEDDDS 321
>UNIPROTKB|E1BXX6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AADN02042596
IPI:IPI00592352 RefSeq:XP_417016.2 ProteinModelPortal:E1BXX6
Ensembl:ENSGALT00000027368 GeneID:418821 KEGG:gga:418821
NextBio:20821959 Uniprot:E1BXX6
Length = 963
Score = 401 (146.2 bits), Expect = 5.9e-65, Sum P(3) = 5.9e-65
Identities = 81/215 (37%), Positives = 125/215 (58%)
Query: 194 RLEEGDAT-IEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A +E + + ID W S +P H + G G+ E + +L E+ +
Sbjct: 387 RIETRQADKLEGQRIIVAIDGWPRNSRYPNGHFVKNLGSAGDKETETEVLLLEHDVPHQP 446
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + ++++ R+DLR+ + ++DP TD+DDAL + +G VG
Sbjct: 447 FSQNVLSFLPKMPWSITEKDMKYREDLRHLYVCSVDPPGCTDIDDALHCREIENGNLEVG 506
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDRLAFS
Sbjct: 507 VHIADVSHFIRPGNALDEESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCI 566
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
W++N +++ +++I S L+Y AQ ID
Sbjct: 567 WEMNQKAEILKTRFTKSIINSKASLTYAEAQMRID 601
Score = 343 (125.8 bits), Expect = 5.9e-65, Sum P(3) = 5.9e-65
Identities = 81/203 (39%), Positives = 113/203 (55%)
Query: 433 DVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFE 491
D+ S++ L +++KILK KR +GAL L + + F D E P D + N + E
Sbjct: 608 DITVSLRGLNKLAKILKKKRIDNGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVE 667
Query: 492 EFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQS 551
EFMLLAN + A+ I FP+ ALLR+HPAP L++ T S+ +S
Sbjct: 668 EFMLLANVSVAQKIYDEFPEFALLRKHPAPPPSNYDILVKAAKSKNLEIKTDSAKALAES 727
Query: 552 LEQAREKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSP 610
L++A D+ + L+ TR M A YFCSG D+D+ HY LA P+YTHFTSP
Sbjct: 728 LDKAESP---DFPYLNTLLRILTTRCMMQAVYFCSGM---DSDFHHYGLASPIYTHFTSP 781
Query: 611 LRRYPDLVVHRTLNAALEAEKLY 633
+RRY D++VHR L A+ A+ Y
Sbjct: 782 IRRYADIIVHRLLAVAIGADSTY 804
Score = 50 (22.7 bits), Expect = 5.9e-65, Sum P(3) = 5.9e-65
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 115 RPTGRVVSIIERSPRRDGIVGFLNVNQ 141
RPTG+VV II+R+ R G L+ +Q
Sbjct: 343 RPTGKVVGIIKRNWRP--FCGMLSKSQ 367
>UNIPROTKB|E2RNY6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AAEX03013240
RefSeq:XP_542610.3 Ensembl:ENSCAFT00000008080 GeneID:485491
KEGG:cfa:485491 NextBio:20859485 Uniprot:E2RNY6
Length = 958
Score = 412 (150.1 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 85/215 (39%), Positives = 127/215 (59%)
Query: 194 RLEEGDAT-IEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A+ +E + ID W S +P H + G GE E + +L E+ +
Sbjct: 384 RIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGEVGEKETETEVLLLEHDVPHQP 443
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + ++++ +R+DLR+ C+ ++DP TD+DDAL L +G VG
Sbjct: 444 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELENGNLEVG 503
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDRLAFS
Sbjct: 504 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRCNVDRLAFSCI 563
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
W++N +++ ++VI S L+Y AQ ID
Sbjct: 564 WEMNHDAEILKVRFTKSVINSKASLTYAEAQMRID 598
Score = 326 (119.8 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 87/245 (35%), Positives = 125/245 (51%)
Query: 395 CKLSYEHAQDIIDGKF-----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
C H +I+ +F + ++S T E ++ D+ S++ L +++KILK
Sbjct: 562 CIWEMNHDAEILKVRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTSLRGLNKLAKILK 621
Query: 450 DKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
+R GAL L + + F D E P D + N + EEFMLLAN + A+ I
Sbjct: 622 KRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEE 681
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 568
F + ALLR+HPAP L++ T ++ SL++A + Y L +
Sbjct: 682 FSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKSLADSLDRA-DSPTFPY-LNTL 739
Query: 569 LINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
L ATR M A YFCSG D D+ HY LA P+YTHFTSP+RRY D++VHR L A+
Sbjct: 740 LRILATRCMMQAVYFCSGM---DNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIG 796
Query: 629 AEKLY 633
A+ Y
Sbjct: 797 ADCTY 801
Score = 52 (23.4 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 102 ERLSAMISSYPTKRPTGRVVSIIERSPR 129
ER+ S +PTGRVV II+R+ R
Sbjct: 327 ERILKTAVSEKMLKPTGRVVGIIKRNWR 354
>FB|FBgn0039183 [details] [associations]
symbol:Dis3 "Dis3" species:7227 "Drosophila melanogaster"
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0071027 "nuclear RNA
surveillance" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0022008 GO:GO:0003723 GO:GO:0004540 GO:GO:0010468
GO:GO:0005652 GO:GO:0000176 InterPro:IPR022966 PROSITE:PS01175
SMART:SM00670 GO:GO:0071027 FlyBase:FBgn0039183 EMBL:AJ276897
ProteinModelPortal:Q9BI20 STRING:Q9BI20 PRIDE:Q9BI20
InParanoid:Q9BI20 ArrayExpress:Q9BI20 Bgee:Q9BI20 Uniprot:Q9BI20
Length = 983
Score = 362 (132.5 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 80/216 (37%), Positives = 123/216 (56%)
Query: 194 RLEEGDAT-IEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A ++ + + ID W S +P H + G G++ + IL E+ +
Sbjct: 391 RIETRQAAMLQNQRIIVTIDTWPRNSRYPHGHFVRSLGPLGDMATENEVILLEHDVPHCK 450
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS E LS LP +PW + E+ R DLR+ I ++DP TD+DDAL L +G VG
Sbjct: 451 FSDEVLSFLPKMPWTITDEDYSKRVDLRDLYICSVDPPGCTDIDDALHCRELPNGNLEVG 510
Query: 313 VHIADVSYFVLPGTALDIEAQ-VRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSI 371
VHIADVS+F+ PG T+VY++ ++I M+P LLS + SL GV+R AFS
Sbjct: 511 VHIADVSHFIRPGKRTGHGGSGPGETTVYLVGKRIDMVPELLSSNLCSLVGGVERFAFSC 570
Query: 372 FWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
W++++ +V+ + ++VI+S ++YE AQ+IID
Sbjct: 571 VWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIID 606
Score = 332 (121.9 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 80/218 (36%), Positives = 123/218 (56%)
Query: 432 SDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLF 490
+++ +S+++L ++KILK +R +GAL L + + F D E P + + + N +
Sbjct: 612 NEIAKSLRNLNRLAKILKKRRMDNGALVLASPEIRFQVDSETHEPLEVEVKQMRETNSMV 671
Query: 491 EEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ 550
EEFMLLAN T AE IA F + A+LRRHP P G Q+D +S +
Sbjct: 672 EEFMLLANITVAEHIATEFSECAVLRRHPRPPPTNFDPLVKSARYQGFQVDINSGLELSH 731
Query: 551 SLEQAREKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTS 609
SL++ +K D F+ +I TR M A YF SG + + ++ HY LA P+YTHFTS
Sbjct: 732 SLDKC---VKADNPYFNTMIRILTTRCMMQAVYFISGSLQKE-EFFHYGLAAPIYTHFTS 787
Query: 610 PLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHRE 647
P+RRY D++VHR L A++ A+ Y ++L + ++ E
Sbjct: 788 PIRRYSDIMVHRLLAASIGADSTY---AQLLDRKSNEE 822
Score = 51 (23.0 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 94 QNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRR 130
+N+ +N + +A +S+ T PTGR+V I+ R R+
Sbjct: 330 ENEMLNQVR--AAALSAERT--PTGRIVGIVRRKWRQ 362
Score = 39 (18.8 bits), Expect = 5.8e-25, Sum P(2) = 5.8e-25
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 257 SLSCLPCVPWEVPQEELLSRKDL 279
++ LP W P E +L K++
Sbjct: 294 AVELLPEAEWSAPSEIVLEEKNV 316
Score = 38 (18.4 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 261 LPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGI 308
LP P + +ELL T S L+ +++E+ GI
Sbjct: 229 LPQYPPHLSMKELLEGLRQNKLLQGTFQASRENYLEGTVNVEKFEKGI 276
>WB|WBGene00001001 [details] [associations]
symbol:dis-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005737 GO:GO:0040010 GO:GO:0005730
GO:GO:0040018 GO:GO:0000003 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 GO:GO:0000178 GO:GO:0004540 GO:GO:0006364
eggNOG:COG0557 HOGENOM:HOG000191945 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 EMBL:Z70718 PIR:T18925 RefSeq:NP_501835.2
ProteinModelPortal:Q17632 SMR:Q17632 STRING:Q17632 PaxDb:Q17632
EnsemblMetazoa:C04G2.6 GeneID:177875 KEGG:cel:CELE_C04G2.6
UCSC:C04G2.6 CTD:177875 WormBase:C04G2.6 InParanoid:Q17632
NextBio:898756 Uniprot:Q17632
Length = 961
Score = 396 (144.5 bits), Expect = 4.7e-59, Sum P(2) = 4.7e-59
Identities = 94/248 (37%), Positives = 137/248 (55%)
Query: 194 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A T+ + + ID W +S +P H + G G E + +L E+ I +
Sbjct: 393 RIETEQAETLSQQRIVVAIDHWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAP 452
Query: 253 FSPESLSCLPCVPWEVPQEEL---LSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGIS 309
FS L CLP WE E L R DLR+ I ++DP TD+DDAL +++ + +
Sbjct: 453 FSESVLDCLPREEWEPDLTENRGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLF 512
Query: 310 RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAF 369
VGVHIADV++FV PGTA+D EA +R T+VY+ R+I MLP LLS + SL +R AF
Sbjct: 513 EVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAF 572
Query: 370 SIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQF 429
S W + S+ D+ +++I+S L+YE AQ+IID D + N + G L G
Sbjct: 573 SCIWTMTSSADIQSVKYHKSLIKSKAALTYEKAQEIID---DPKEQNDVALG---LRGLM 626
Query: 430 EWSDVVRS 437
+ S V+ +
Sbjct: 627 KLSKVLNA 634
Score = 296 (109.3 bits), Expect = 4.7e-59, Sum P(2) = 4.7e-59
Identities = 76/204 (37%), Positives = 109/204 (53%)
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNF 488
E +DV ++ L ++SK+L +R +GAL L +S+ F D E TP + D +
Sbjct: 614 EQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDWESRTPKKVMEKQHLDTHS 673
Query: 489 LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQF 548
+ EEFMLLAN + AE I +PD ALLRRHP P + G ++ S
Sbjct: 674 MVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESYKPLVEAARHRGFEIIVESGKGL 733
Query: 549 HQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 608
SL + +K K+ +L +L TR M A YF +G + H+ LA +YTHFT
Sbjct: 734 ADSLNRCVDK-KNP-MLNRLLRMLTTRCMTQAVYFSAGTVPVP-QYQHFGLACAIYTHFT 790
Query: 609 SPLRRYPDLVVHRTLNAALEAEKL 632
SP+RRY D++VHR L AA+ A+ +
Sbjct: 791 SPIRRYADVIVHRLLAAAIGADDI 814
>ASPGD|ASPL0000011287 [details] [associations]
symbol:AN3657 species:162425 "Emericella nidulans"
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005730 EMBL:BN001302 EMBL:AACD01000061 GO:GO:0004521
GO:GO:0000049 GO:GO:0071039 GO:GO:0071035 GO:GO:0071038
GO:GO:0000467 GO:GO:0070651 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028 RefSeq:XP_661261.1
ProteinModelPortal:Q5B723 SMR:Q5B723 STRING:Q5B723
EnsemblFungi:CADANIAT00005078 GeneID:2873078 KEGG:ani:AN3657.2
Uniprot:Q5B723
Length = 1015
Score = 380 (138.8 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 105/296 (35%), Positives = 151/296 (51%)
Query: 133 IVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIK 192
+VG + N W Y G D S + ++ + + P K PK+ V + + +
Sbjct: 369 VVGVVKRN-WRQYVG--TVDPTSTGSQTTGRRQQNVFVLPMEKKVPKIRVRTRQATELLG 425
Query: 193 KRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
+R+ LV ID WN +S +P H + G + A+L E +
Sbjct: 426 QRI----------LVT--IDAWNRDSRYPTGHFIRSLGELETKSAETEALLLEWDVQYKP 473
Query: 253 FSPESLSCLPCV--PWEVP--QEEL--LSRKDLRNFCIFTIDPSTATDLDDALSIERLSD 306
F L CLP W VP ++++ R+DLR+ I +IDP D+DDAL +L +
Sbjct: 474 FPKAVLECLPPEGHDWRVPASKDDIGWRGRRDLRDLLICSIDPPGCQDIDDALHARKLPN 533
Query: 307 GISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDR 366
G VGVHIADVS+FV P A+D+EA VR T+VY++ ++I MLP LL ++ SL P V+R
Sbjct: 534 GNFEVGVHIADVSHFVKPNNAMDLEASVRGTTVYLVDKRIDMLPHLLGTDLCSLKPYVER 593
Query: 367 LAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID--GKFD--VESSNTL 418
AFS+ W++ +VV ++VIRS SYE AQ ID K D ES TL
Sbjct: 594 YAFSVLWEMTPDAEVVSADFTKSVIRSREAFSYEQAQLRIDDPSKTDELTESMRTL 649
Score = 319 (117.4 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 81/203 (39%), Positives = 111/203 (54%)
Query: 433 DVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD--EYGTPYDSVLS-GREDLNFL 489
++ S+++L +SKIL+ KR GAL L + + D E G P V + N L
Sbjct: 641 ELTESMRTLLHLSKILRQKRMDAGALNLASPEVRIEADNDEVGDPLADVKTKAMLATNSL 700
Query: 490 FEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF-EAFCSKHGLQLDTSSSGQF 548
EEFML AN T A I FP +A+LRRH P + E K ++LD SSS
Sbjct: 701 VEEFMLHANITVAAKIYSTFPQTAMLRRHATPPPQNFEELINQLTKKRDMRLDVSSSRAL 760
Query: 549 HQSLEQAREKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHF 607
SL++ + + F+ L+ ATR M A YFC+G + +++ HY LA P+YTHF
Sbjct: 761 ADSLDRCTDA---ENPFFNTLVRILATRCMTSAEYFCAGAHAE-SEFRHYGLASPIYTHF 816
Query: 608 TSPLRRYPDLVVHRTLNAALEAE 630
TSP+RRY DL+VHR L AA+ E
Sbjct: 817 TSPIRRYADLLVHRQLAAAINYE 839
Score = 38 (18.4 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 115 RPTGRVVSIIERSPRR 130
+PT +VV +++R+ R+
Sbjct: 364 QPTAKVVGVVKRNWRQ 379
>UNIPROTKB|F1PK78 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AAEX03016225
Ensembl:ENSCAFT00000027369 Uniprot:F1PK78
Length = 1024
Score = 600 (216.3 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
Identities = 139/373 (37%), Positives = 210/373 (56%)
Query: 262 PCVPWEVPQEELLSRKDLRN-FCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSY 320
P PW+V EE RKDLR +F+IDP D+DD LS+ L++G +GVHIADV++
Sbjct: 420 PGNPWKVSPEEERERKDLRETHLVFSIDPKGCEDVDDTLSVRTLANGSLELGVHIADVTH 479
Query: 321 FVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG- 379
FV P + +D EA+ R+T+ Y+ R+ MLP +LS ++ SL GVDR A S+ W+L+
Sbjct: 480 FVPPSSYIDTEARTRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVIWELDRTSY 539
Query: 380 DVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIK 439
++ + W GRT+IRS KL YE AQ+++DG V + Q + ++V ++
Sbjct: 540 EIKNVWFGRTIIRSAYKLFYEAAQELLDGNVTVVEDIPELKNLDTKSRQAKLEELVWALG 599
Query: 440 SLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANK 499
L ++++ ++ KR GAL LE + DE +D + +++ E M+LAN
Sbjct: 600 KLTDIARHIRAKRDRCGALELEGVEVRVQLDEKKNIHDLIPKQPLEVHETVAECMILANH 659
Query: 500 TAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKL 559
A I +FP ALLR+HP P+ E G +DT S+ SL+ A +
Sbjct: 660 WVARKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDP- 718
Query: 560 KDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHY-ALAFPVYTHFTSPLRRYPDLV 618
+D ++ +L + AT+ M A YF +G ++ ++ HY LA YTHFTSP+RRY D+V
Sbjct: 719 -NDPIVNRLLRSMATQAMSNALYFSTGSCAEE-EFHHYEGLALDKYTHFTSPIRRYSDIV 776
Query: 619 VHRTLNAALEAEK 631
VHR L AA+ +K
Sbjct: 777 VHRLLMAAISKDK 789
Score = 56 (24.8 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
Identities = 15/79 (18%), Positives = 36/79 (45%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYI 742
L + H N+R A ++ + +L+ + K K E +S+ + ++ + ++I
Sbjct: 803 LEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPENEERCISDGVIYSIRTNGVLVFI 862
Query: 743 EKLAIERRIYYDEVEGLIV 761
+ I+ Y +GL++
Sbjct: 863 PRFGIKGAAYLRNKDGLVI 881
>POMBASE|SPBC26H8.10 [details] [associations]
symbol:dis3 "3'-5' exoribonuclease subunit Dis3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000465 "exonucleolytic
trimming to generate mature 5'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008536 "Ran GTPase binding" evidence=IPI] [GO:0032853
"positive regulation of Ran GTPase activity" evidence=IMP]
[GO:0034661 "ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001900 InterPro:IPR003029
Pfam:PF00773 PROSITE:PS50126 SMART:SM00955 PomBase:SPBC26H8.10
InterPro:IPR006596 GO:GO:0051301 GO:GO:0007067 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0040008 GO:GO:0004521
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 EMBL:M74094 PIR:A41944
RefSeq:NP_596653.1 ProteinModelPortal:P37202 SMR:P37202
STRING:P37202 PRIDE:P37202 EnsemblFungi:SPBC26H8.10.1
GeneID:2540398 KEGG:spo:SPBC26H8.10 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH BRENDA:3.1.13.1 NextBio:20801525 GO:GO:0000465
GO:GO:0032853 SMART:SM00670 Uniprot:P37202
Length = 970
Score = 339 (124.4 bits), Expect = 3.9e-57, Sum P(2) = 3.9e-57
Identities = 85/204 (41%), Positives = 118/204 (57%)
Query: 434 VVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEE 492
+ + ++ L ++SKILK KR +GAL L + + D E P D + + N L EE
Sbjct: 635 LTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDNETSDPMDVEIKQLLETNSLVEE 694
Query: 493 FMLLANKTAAEVIARAFPDSALLRRHPAP---NMRKLREFEAFCSKHGLQLDTSSSGQFH 549
FMLLAN + A+ I AFP +A+LRRH AP N L++ C L+ DTS S
Sbjct: 695 FMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNFDSLQDILRVCKGMHLKCDTSKS--LA 752
Query: 550 QSLEQAREKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 608
+SL++ + K+ Y F+ L+ TR M A YFCSG F D+ HY LA P+YTHFT
Sbjct: 753 KSLDECVDP-KEPY--FNTLLRILTTRCMLSAEYFCSGTFAPP-DFRHYGLASPIYTHFT 808
Query: 609 SPLRRYPDLVVHRTLNAALEAEKL 632
SP+RRY D++ HR L AA++ E +
Sbjct: 809 SPIRRYADVLAHRQLAAAIDYETI 832
Score = 338 (124.0 bits), Expect = 3.9e-57, Sum P(2) = 3.9e-57
Identities = 98/295 (33%), Positives = 148/295 (50%)
Query: 133 IVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIK 192
+VG L N W Y G D S ++ + LTP + PK+ + P +
Sbjct: 363 VVGILKRN-WRPYVG--HVDNATIAQSKG-GSQQTVLLTPMDRRVPKIRFRTRQAPRLVG 418
Query: 193 KRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
+R+ +VA ID W+ S +P+ H + G E + A+L E +
Sbjct: 419 RRI----------VVA--IDLWDASSRYPEGHFVRDLGEMETKEAETEALLLEYDVQHRP 466
Query: 253 FSPESLSCLPCVP--WEVPQEEL----LSRKDLRNFCIFTIDPSTATDLDDALSIERLSD 306
F L CLP W+VP ++ +RKD R+ I +IDP D+DDAL L +
Sbjct: 467 FPKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFRDKLICSIDPPGCQDIDDALHACVLPN 526
Query: 307 GISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDR 366
G VGVHIADV++FV P T++D EA R T+VY++ ++I MLP+LL ++ SL P V+R
Sbjct: 527 GNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRPYVER 586
Query: 367 LAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEG 421
AFS W+++ +++ ++VI S SY AQ ID D + + L +G
Sbjct: 587 FAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQARID---DQKMQDPLTQG 638
Score = 60 (26.2 bits), Expect = 6.1e-28, Sum P(2) = 6.1e-28
Identities = 41/138 (29%), Positives = 61/138 (44%)
Query: 100 AIERLSAMISSYP--TKR---PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAK 154
A E SA I+ TKR PT +VV I++R+ R VG ++ KGGS++
Sbjct: 338 AAEPDSARINDLELITKRNAHPTAKVVGILKRNWRP--YVGHVDNATIAQSKGGSQQTVL 395
Query: 155 KNRSSLSVPDREYIQLTPTHPKYP-KMVVLVKDLPDSIKKRLEEGDATI---EMELVAAR 210
VP + T P+ + +V+ DL D+ R EG EME A
Sbjct: 396 LTPMDRRVPKIRF--RTRQAPRLVGRRIVVAIDLWDA-SSRYPEGHFVRDLGEMETKEAE 452
Query: 211 ID----EWN-EESPFPQA 223
+ E++ + PFP+A
Sbjct: 453 TEALLLEYDVQHRPFPKA 470
>SGD|S000005381 [details] [associations]
symbol:DIS3 "Exosome core complex catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IC] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IDA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IMP]
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004521
"endoribonuclease activity" evidence=IMP;IDA] [GO:0000178 "exosome
(RNase complex)" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IGI;IMP;IDA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0000049 "tRNA
binding" evidence=IDA;IMP] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=IC] [GO:0043628 "ncRNA
3'-end processing" evidence=IMP] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IC]
InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 SGD:S000005381 InterPro:IPR006596 GO:GO:0005739
GO:GO:0005730 EMBL:BK006948 GO:GO:0004521 GO:GO:0000049
GO:GO:0071039 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000175 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 OMA:MPWSITE OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028
PDB:2WP8 PDBsum:2WP8 EMBL:D76430 EMBL:Z74763 PIR:S66704
RefSeq:NP_014621.1 PDB:2VNU PDBsum:2VNU ProteinModelPortal:Q08162
SMR:Q08162 DIP:DIP-2355N IntAct:Q08162 MINT:MINT-614156
STRING:Q08162 PaxDb:Q08162 PeptideAtlas:Q08162 EnsemblFungi:YOL021C
GeneID:854138 KEGG:sce:YOL021C CYGD:YOL021c
EvolutionaryTrace:Q08162 NextBio:975871 Genevestigator:Q08162
GermOnline:YOL021C Uniprot:Q08162
Length = 1001
Score = 381 (139.2 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 92/243 (37%), Positives = 138/243 (56%)
Query: 180 MVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQI 239
++++ K LP ++ R ++ +V + ID W +P H + G + +
Sbjct: 424 VILMDKCLP-KVRIRTRRAAELLDKRIVIS-IDSWPTTHKYPLGHFVRDLGTIESAQAET 481
Query: 240 NAILYENAICCSGFSPESLSCLPCV--PWEVP----------QEELLS-RKDLRNFCIFT 286
A+L E+ + FS + L CLP W+ P ++ LL+ RKDLR+ I +
Sbjct: 482 EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICS 541
Query: 287 IDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKI 346
IDP D+DDAL ++L +G VGVHIADV++FV PGTALD E R TSVY++ ++I
Sbjct: 542 IDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRI 601
Query: 347 PMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDII 406
MLP+LL ++ SL P VDR AFS+ W+L+ + ++V+ ++VIRS SYE AQ I
Sbjct: 602 DMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI 661
Query: 407 DGK 409
D K
Sbjct: 662 DDK 664
Score = 288 (106.4 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 77/208 (37%), Positives = 109/208 (52%)
Query: 433 DVVRSIKSLYEVSKILKDKRFTDGALRLENSK-PVFLFDEYGTPYDSVLSGREDLNFLFE 491
++ +++L ++S LK KR GAL L + + V + E P + + N L E
Sbjct: 669 ELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVE 728
Query: 492 EFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF-EAFCSKHGLQLDTSSSGQFHQ 550
EFMLLAN + A I AFP +A+LRRH AP E ++ + + SS
Sbjct: 729 EFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALAD 788
Query: 551 SLEQAREKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTS 609
SL++ + +D Y F+ L+ +TR M A YF SG + D+ HY LA +YTHFTS
Sbjct: 789 SLDRCVDP-EDPY--FNTLVRIMSTRCMMAAQYFYSGAYSYP-DFRHYGLAVDIYTHFTS 844
Query: 610 PLRRYPDLVVHRTLNAALEAEKLYWKHR 637
P+RRY D+V HR L A+ E L HR
Sbjct: 845 PIRRYCDVVAHRQLAGAIGYEPLSLTHR 872
Score = 40 (19.1 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 148 GSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLV--KDLPDSIKKRLEEGDATIEME 205
G K+ + ++ + + +++ + + P++ K V++V K+L R GD I +E
Sbjct: 266 GGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNL-----NRAFNGDQVI-VE 319
Query: 206 LVAARIDEWNEES 218
L+ EW S
Sbjct: 320 LLPQ--SEWKAPS 330
Score = 39 (18.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 422 WPQLYGQFEWSDVVRSIKSLYEVSKILKDK 451
W Q GQ S V S V IL DK
Sbjct: 400 WRQYVGQLAPSSVDPQSSSTQNVFVILMDK 429
>CGD|CAL0003527 [details] [associations]
symbol:orf19.5229 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001900
InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
CGD:CAL0003527 InterPro:IPR006596 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 SMART:SM00670 EMBL:AACQ01000070
EMBL:AACQ01000071 RefSeq:XP_716298.1 RefSeq:XP_716360.1
ProteinModelPortal:Q5A3P1 SMR:Q5A3P1 STRING:Q5A3P1 GeneID:3641956
GeneID:3642063 KEGG:cal:CaO19.12694 KEGG:cal:CaO19.5229
Uniprot:Q5A3P1
Length = 1004
Score = 350 (128.3 bits), Expect = 7.6e-54, Sum P(3) = 7.6e-54
Identities = 86/243 (35%), Positives = 125/243 (51%)
Query: 174 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 233
H V+L+ I+ R + + +V +D W S +P H + G
Sbjct: 425 HASRSCFVILMDPKLPKIRIRTRKAREYLGQRIVVV-VDSWPINSRYPNGHFVRALGEIE 483
Query: 234 EVEPQINAILYENAICCSGFSPESLSCLPCVP--WEVPQ-------EELLSRKDLRNFCI 284
E + A+L E+ + FS L CLP W VP +L R DLR+ +
Sbjct: 484 SAEAETEALLLEHDVEYRPFSKNVLDCLPKEGDNWVVPDITNNTEDPQLQKRVDLRDKLV 543
Query: 285 FTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQR 344
+IDP D+DDAL ++L +G VGVHIADV++FV P T LD E R TSVY++ +
Sbjct: 544 CSIDPPNCVDIDDALHAKQLPNGNYEVGVHIADVTHFVKPNTPLDQEGASRGTSVYLVDK 603
Query: 345 KIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQD 404
+I MLP LL + SL P VDR AFS+ W+++ ++V+ +++I+S SYE AQ
Sbjct: 604 RIDMLPQLLGTNLCSLKPFVDRFAFSVIWEVDEDANIVNVNYMKSIIKSRQAFSYEQAQL 663
Query: 405 IID 407
ID
Sbjct: 664 RID 666
Score = 305 (112.4 bits), Expect = 7.6e-54, Sum P(3) = 7.6e-54
Identities = 80/210 (38%), Positives = 113/210 (53%)
Query: 433 DVVRSIKSLYEVSKILKDKRFTDGALRLENSK-PVFLFDEYGTPYDSVLSGREDLNFLFE 491
D+ +S++ L ++SK LK KR GAL L + + V + E P + + + N L E
Sbjct: 673 DLTKSMRILLKLSKKLKQKRLDAGALNLASPEVKVHMDSETSDPQEVEIKKLLETNSLVE 732
Query: 492 EFMLLANKTAAEVIARAFPDSALLRRHPAP---NMRKLREFEAFCSKHGLQLDTSSSGQF 548
EFML AN + A I A+P +A+LRRH AP N L + K+G+ + SS
Sbjct: 733 EFMLFANISVARKIYDAYPQTAMLRRHAAPPATNFETLNDM-LNVRKNGMSISLESSKAL 791
Query: 549 HQSLEQAREKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHF 607
SL++ + D Y F+ L+ +TR M A YF SG + ++ HY LA +YTHF
Sbjct: 792 ADSLDRCIDP-NDKY--FNTLVRIMSTRCMMAAEYFPSGSY-GYPEFRHYGLAVDIYTHF 847
Query: 608 TSPLRRYPDLVVHRTLNAALEAEKLYWKHR 637
TSP+RRY D+V HR L A+ E L HR
Sbjct: 848 TSPIRRYCDVVAHRQLAGAIGYENLDLSHR 877
Score = 38 (18.4 bits), Expect = 7.6e-54, Sum P(3) = 7.6e-54
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 100 AIERLSAMISSYPTKR--PTGRVVSIIERSPR 129
A E + + S KR PT ++V ++ RS R
Sbjct: 375 AQEAIKVIGSKNEDKRLQPTAKIVGVMRRSWR 406
>UNIPROTKB|F1N1R4 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 EMBL:DAAA02033486 EMBL:DAAA02033485
IPI:IPI01017508 Ensembl:ENSBTAT00000026500 Uniprot:F1N1R4
Length = 951
Score = 324 (119.1 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 83/224 (37%), Positives = 118/224 (52%)
Query: 411 DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD 470
++++S T E ++ ++ S++ L +++KILK R GAL L + + F D
Sbjct: 576 NIQASLTYAEAQMRIDSAAMNDNITTSLRGLNKLAKILKKGRIEKGALTLSSPEVRFHMD 635
Query: 471 -EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 529
E P D + N + EEFMLLAN + A+ I F + ALLR+HPAP
Sbjct: 636 SETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYEIL 695
Query: 530 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 589
L++ T ++ SL+QA + Y L +L ATR M A YFCSG
Sbjct: 696 VKAAKSKNLEIKTDTAKALADSLDQADSPIFP-Y-LNTLLRILATRCMMQAVYFCSGM-- 751
Query: 590 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLY 633
D D+ HY LA P+YTHFTSP+RRY D++VHR L A+ A+ Y
Sbjct: 752 -DNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIGADCTY 794
Score = 309 (113.8 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 71/215 (33%), Positives = 112/215 (52%)
Query: 194 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A T+E + +D W S +P H + G G+ E + +L E+ +
Sbjct: 384 RIETRQASTLEGRRIIVAVDGWPRNSRYPNGHFVKNLGEVGDKETETEVLLLEHDVPHQA 443
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + ++++ +R+DLR+ C+ ++DP TD+DDAL L +G VG
Sbjct: 444 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELENGNLEVG 503
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
VHIADVS+F+ PG ALD E+ R T+VY+ +++I L+ S + S
Sbjct: 504 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDXFTELVVGNKASCETDKE----SCV 559
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
DLN ++ + ++ L+Y AQ ID
Sbjct: 560 NDLNFPSKILYE---KNLVNIQASLTYAEAQMRID 591
Score = 49 (22.3 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 115 RPTGRVVSIIERSPR 129
+PTGRVV II+R+ R
Sbjct: 340 KPTGRVVGIIKRNWR 354
>TIGR_CMR|CHY_0289 [details] [associations]
symbol:CHY_0289 "ribonuclease R" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0008997 "ribonuclease R
activity" evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_359161.1 ProteinModelPortal:Q3AFC3 STRING:Q3AFC3
GeneID:3727430 KEGG:chy:CHY_0289 PATRIC:21273751
HOGENOM:HOG000071119 BioCyc:CHYD246194:GJCN-290-MONOMER
Uniprot:Q3AFC3
Length = 724
Score = 454 (164.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 124/383 (32%), Positives = 201/383 (52%)
Query: 205 ELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV 264
E V I + + P+ ++ + G + E ++ AI+ + + S F PE++ +
Sbjct: 173 EKVVVEITAYPRKGELPEGKIIEILGDPEDQETRLKAIIKKYGLLDS-FKPETIKEARAI 231
Query: 265 PWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLP 324
E+ EEL SR+DLR I TID A DLDDA+S+++L +G ++GVHIADVSY+V
Sbjct: 232 SQEIGPEELKSRRDLRGEMIVTIDDEDAKDLDDAVSLKKLPNGNYQLGVHIADVSYYVRE 291
Query: 325 GTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 384
G+ALD EA R TSVY+ + +PMLP LS + SLNP VDRL S+ ++ AG+VV
Sbjct: 292 GSALDKEALERGTSVYLAGKVLPMLPPELSNGICSLNPRVDRLTLSVVMEITPAGEVVSH 351
Query: 385 WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEV 444
I +VI++ +L+Y + + K D ++ LG D+V ++ + +
Sbjct: 352 EIFPSVIKTRARLTYTIVKKAVLDK-DPKAREELG-------------DLVPMLEEMANL 397
Query: 445 SKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAE- 503
+ IL+ +R GA+ + + + D+ G D V R + L EEFML+ N+T AE
Sbjct: 398 AMILRKRRLERGAIDFDLPEAKVILDDKGEVVDIVRRERNIAHQLIEEFMLITNETVAER 457
Query: 504 VIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFH-QSLEQAREKL--- 559
+ P L R H P+ K++ + F G L G++H + ++ EK+
Sbjct: 458 FFWQEVP--FLYRIHEDPDEGKIQSLKEFLRLFGYNLKGGRDGKYHPREFQRLLEKVAGR 515
Query: 560 KDDYVLFDILINYATRPMQLASY 582
K++ V+ +++ R M+ A Y
Sbjct: 516 KEERVINAVML----RSMKQARY 534
Score = 234 (87.4 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 76/265 (28%), Positives = 125/265 (47%)
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFL 489
E D+V ++ + ++ IL+ +R GA+ + + + D+ G D V R + L
Sbjct: 383 ELGDLVPMLEEMANLAMILRKRRLERGAIDFDLPEAKVILDDKGEVVDIVRRERNIAHQL 442
Query: 490 FEEFMLLANKTAAEVIARAFPDSA--LLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ 547
EEFML+ N+T AE R F L R H P+ K++ + F G L G+
Sbjct: 443 IEEFMLITNETVAE---RFFWQEVPFLYRIHEDPDEGKIQSLKEFLRLFGYNLKGGRDGK 499
Query: 548 FH-QSLEQAREKL---KDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPV 603
+H + ++ EK+ K++ V+ +++ R M+ A Y + W H+ LA
Sbjct: 500 YHPREFQRLLEKVAGRKEERVINAVML----RSMKQARYSA------ERIW-HFGLAAEY 548
Query: 604 YTHFTSPLRRYPDLVVHRTLNAALEAE---KLYWKHRRMLPK-NNHREGVRGRFLTGI-- 657
YTHFTSP+RRYPDL++HR + LE + + K ++LPK H + R +
Sbjct: 549 YTHFTSPIRRYPDLMIHRIIREVLEGKLTPRREAKLAKILPKVAKHSSEMERRAMEAERE 608
Query: 658 FYDKDAAESLEGREALSVAALKYGV 682
+ E + G+E A+ GV
Sbjct: 609 SVEMRMVEFMVGKEGTEYDAIISGV 633
Score = 43 (20.2 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 115 RPTGRVVSIIERSPRRDGIVG 135
RP G VV I+ER+ + +VG
Sbjct: 118 RPEGEVVKILERANKT--VVG 136
>UNIPROTKB|I3LLL5 [details] [associations]
symbol:I3LLL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 GO:GO:0003723 GO:GO:0004540 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 EMBL:CU861482
Ensembl:ENSSSCT00000031517 Uniprot:I3LLL5
Length = 385
Score = 349 (127.9 bits), Expect = 6.2e-40, Sum P(2) = 6.2e-40
Identities = 69/139 (49%), Positives = 90/139 (64%)
Query: 489 LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQF 548
L EEFMLLAN A I RAFP+ ALLRRHP P + L + FC + GL +D SS+G
Sbjct: 83 LVEEFMLLANMAVAREIHRAFPERALLRRHPPPQTKMLNDLMEFCEQLGLPMDFSSAGAL 142
Query: 549 HQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 608
++SL + K ++L N +RPMQ+A YFC+G +D + HYAL P+YTHFT
Sbjct: 143 NKSLTETFGDDKYSLARKEVLTNMCSRPMQMALYFCAGTLRDPAQFRHYALNVPLYTHFT 202
Query: 609 SPLRRYPDLVVHRTLNAAL 627
SP+RR+ D++VHR L AAL
Sbjct: 203 SPIRRFADVMVHRLLAAAL 221
Score = 113 (44.8 bits), Expect = 6.2e-40, Sum P(2) = 6.2e-40
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 673 LSVAALKYGVPCADILVNV----ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEA 728
L AAL Y P D+ NV A HCNDR++A + V++ L+ IL+K+ L SEA
Sbjct: 216 LLAAALGYREP-PDMEPNVLQKRADHCNDRRMASKRVQELSTGLFFAILVKESGPLESEA 274
Query: 729 RVLALGPRFMTIYIEKLAIERRIY 752
VL + + + + + +++RIY
Sbjct: 275 MVLGVLNQAFDVLVLRYGVQKRIY 298
>TIGR_CMR|BA_5334 [details] [associations]
symbol:BA_5334 "ribonuclease R" species:198094 "Bacillus
anthracis str. Ames" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0016070 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
HOGENOM:HOG000071119 RefSeq:NP_847510.1 RefSeq:YP_021992.2
RefSeq:YP_031196.1 ProteinModelPortal:Q81XA6 IntAct:Q81XA6
DNASU:1084838 EnsemblBacteria:EBBACT00000009754
EnsemblBacteria:EBBACT00000016672 EnsemblBacteria:EBBACT00000021451
GeneID:1084838 GeneID:2818515 GeneID:2848989 KEGG:ban:BA_5334
KEGG:bar:GBAA_5334 KEGG:bat:BAS4956 ProtClustDB:CLSK873641
BioCyc:BANT260799:GJAJ-5031-MONOMER
BioCyc:BANT261594:GJ7F-5204-MONOMER Uniprot:Q81XA6
Length = 808
Score = 445 (161.7 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 120/384 (31%), Positives = 206/384 (53%)
Query: 202 IEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCL 261
+E V +I + E + V+ + G + I ++++++ + + F E +
Sbjct: 179 VEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLA-FPEEVMEHA 237
Query: 262 PCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYF 321
VP + +E+L R+DLR+ I TID + A DLDDA+++ +L +G ++GVHIADVS++
Sbjct: 238 NSVPETISEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHY 297
Query: 322 VLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDV 381
V G+ +D+EA R+TSVY++ R IPM+P LS + SLNP VDRL S ++N+ GDV
Sbjct: 298 VQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDV 357
Query: 382 VDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSL 441
V I ++VI++ +++Y + I++ + D E L ++E +V K +
Sbjct: 358 VKHEIFQSVIKTTERMTYADVRSILEDE-DEE-----------LMKRYE--PLVPMFKEM 403
Query: 442 YEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTA 501
++++IL++KR GA+ + + L DE G P D V+ R L EEFML+AN+T
Sbjct: 404 GQLAQILREKRMRRGAIDFDFKEAKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETV 463
Query: 502 AEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLK- 560
AE + R H P KL F F + G + ++ ++L+Q E ++
Sbjct: 464 AEHF-HWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQG 522
Query: 561 --DDYVLFDILINYATRPMQLASY 582
++ V+ +++ R M+ A Y
Sbjct: 523 QPEEVVISTVML----RSMKQARY 542
Score = 230 (86.0 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 62/196 (31%), Positives = 99/196 (50%)
Query: 431 WSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLF 490
+ +V K + ++++IL++KR GA+ + + L DE G P D V+ R L
Sbjct: 393 YEPLVPMFKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEEGKPTDVVMRDRSVSEKLI 452
Query: 491 EEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ 550
EEFML+AN+T AE + R H P KL F F + G + ++ +
Sbjct: 453 EEFMLVANETVAEHF-HWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPR 511
Query: 551 SLEQAREKLK---DDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHF 607
+L+Q E ++ ++ V+ +++ R M+ A Y D GH+ L+ YTHF
Sbjct: 512 ALQQILEMVQGQPEEVVISTVML----RSMKQARY-------DADSLGHFGLSTEFYTHF 560
Query: 608 TSPLRRYPDLVVHRTL 623
TSP+RRYPD +VHR +
Sbjct: 561 TSPIRRYPDTIVHRLI 576
Score = 41 (19.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 97 GMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNY 145
G + RLS+ S R G +V I+ER + +VG ++ F +
Sbjct: 113 GDTVLARLSSQSSG---SRQEGSIVRILERGTKE--LVGTYTESKNFGF 156
>ASPGD|ASPL0000054659 [details] [associations]
symbol:AN1158 species:162425 "Emericella nidulans"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0032153 "cell division site"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0060237 "regulation of fungal-type cell wall
organization" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0034613 "cellular protein
localization" evidence=IEA] [GO:2000115 "regulation of maintenance
of bipolar cell polarity regulating cell shape" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:AACD01000016
EMBL:BN001308 GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557
OrthoDB:EOG4MGWGN HOGENOM:HOG000207194 OMA:DIFICGS
RefSeq:XP_658762.1 ProteinModelPortal:Q5BE72 STRING:Q5BE72
EnsemblFungi:CADANIAT00001468 GeneID:2876936 KEGG:ani:AN1158.2
Uniprot:Q5BE72
Length = 1374
Score = 431 (156.8 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
Identities = 122/451 (27%), Positives = 213/451 (47%)
Query: 118 GRVVSIIERSPRR--DGIVGFLNVN-QWFNYKGGSRK---DAKKNRSSLSVPDR-EYIQL 170
G VV++IER + G +G L + Q K + + D R D+ + +
Sbjct: 594 GHVVAVIERIAGQMFSGTLGLLRPSSQATKEKQEAERLARDGAHGRHQDRQQDKPKIVWF 653
Query: 171 TPTHPKYPKMVVLVKDLP-DSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVF 229
PT + P + + + P D ++K + + + A I W S P ++
Sbjct: 654 KPTDKRVPLIAIPTEQAPRDFVEKHQDYAN-----RIFVACIKRWPITSLHPFGTLVEQL 708
Query: 230 GRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQE-ELLSRKDLRNFCIFTID 288
G G+++ + A+L +N F+ L + W + E +L SR+D R FTI+
Sbjct: 709 GEMGDLKVETEALLRDNNFGSDEFTDAVLKSIGWENWSISSEGDLSSRRDFRQETTFTIE 768
Query: 289 PSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPM 348
P+ ++LD+A + L DG + +G+H+ D+++FV P + +D EA+ R T+VY++ R + M
Sbjct: 769 PTGTSELDNAYHFKALPDGKAEIGIHVTDIAHFVKPNSLVDREAKKRGTAVYLVDRLVKM 828
Query: 349 LPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR--WIGRTVIRSCCKLSYEHAQDII 406
LP ++ E+ +L PG +RL S+ + N +D WIG+++I+S KL ++ + +I
Sbjct: 829 LPPRIATELCALLPGEERLTVSVVFKANPETGAIDDDIWIGKSIIKSSGKLGFDEVESVI 888
Query: 407 DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPV 466
G DV S D++R ++ SK ++ R + ++ + +
Sbjct: 889 KGTSDVPLSGVS-------------VDIIRGLQRT--ASKF-REARLGNRVSQIPPLRLL 932
Query: 467 FLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKL 526
D+ P +S + G + L EE AN A + A PD A LRR +PN R+L
Sbjct: 933 HSLDDENVPVESNIFGSSAVRELVEELSCKANFLVARKLVAALPDKAFLRRQQSPNPRRL 992
Query: 527 REFEAFCSKHGLQLDTSSSGQFHQSLEQARE 557
F ++ G D SSSG SL + ++
Sbjct: 993 HSFVDRMNRLGFGFDESSSGSLQSSLCKVKD 1023
Score = 267 (99.0 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 78/229 (34%), Positives = 114/229 (49%)
Query: 404 DIIDGKFDVESSNTLG--EGWPQLYGQFE--WSDV-VRSIKSLYEVSKILKDKRFTDGAL 458
DI GK ++SS LG E + G + S V V I+ L + ++ R +
Sbjct: 865 DIWIGKSIIKSSGKLGFDEVESVIKGTSDVPLSGVSVDIIRGLQRTASKFREARLGNRVS 924
Query: 459 RLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRH 518
++ + + D+ P +S + G + L EE AN A + A PD A LRR
Sbjct: 925 QIPPLRLLHSLDDENVPVESNIFGSSAVRELVEELSCKANFLVARKLVAALPDKAFLRRQ 984
Query: 519 PAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQ 578
+PN R+L F ++ G D SSSG SL+ + K+KDD + + + + MQ
Sbjct: 985 QSPNPRRLHSFVDRMNRLGFGFDESSSG----SLQSSLCKVKDDDLRKGMETIFV-KSMQ 1039
Query: 579 LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
A Y+ +G +D+ HY L PVYTHFT+PLRRY D++VHR L A L
Sbjct: 1040 RAKYYVAGTVQDEMR-PHYTLNLPVYTHFTNPLRRYADVIVHRQLEAVL 1087
Score = 64 (27.6 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
Identities = 32/135 (23%), Positives = 59/135 (43%)
Query: 673 LSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKK--KEV---LLSE 727
LS A+++ + L A CN++K + N ++ V + + K +E+ L+SE
Sbjct: 1087 LSDGAIEFSDD-VESLSKTADICNNKKDSAHNAQEQSVHIEACRNMDKLRQEIGGDLISE 1145
Query: 728 ARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVL------SLCAHKRSF 781
VL + + I + E+R++ D++ E+ + T L L A+
Sbjct: 1146 GIVLCVYESAFDVLIPEYGFEKRVHCDQLPLKKAEYRKETRVLELYWEKGVPSSAYIPED 1205
Query: 782 KRGGPGNYRALEEVA 796
+R P N RA + A
Sbjct: 1206 ERPKPANSRAAQAAA 1220
>MGI|MGI:1919912 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071034 "CUT catabolic process" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 MGI:MGI:1919912
InterPro:IPR006596 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0006364 GO:GO:0000176 GO:GO:0000175 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 OrthoDB:EOG45B1DT
EMBL:AK012840 EMBL:AK032091 EMBL:AK129259 IPI:IPI00407764
RefSeq:NP_082591.2 UniGene:Mm.163339 ProteinModelPortal:Q9CSH3
SMR:Q9CSH3 STRING:Q9CSH3 PhosphoSite:Q9CSH3 PaxDb:Q9CSH3
PRIDE:Q9CSH3 Ensembl:ENSMUST00000042471 GeneID:72662 KEGG:mmu:72662
UCSC:uc007uuw.1 InParanoid:Q9CSH3 NextBio:336687 Bgee:Q9CSH3
CleanEx:MM_DIS3 Genevestigator:Q9CSH3 Uniprot:Q9CSH3
Length = 958
Score = 423 (154.0 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 91/233 (39%), Positives = 133/233 (57%)
Query: 194 RLEEGDAT-IEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A+ +E + ID W S +P H + G GE E + +L E+ +
Sbjct: 384 RIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQP 443
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + +E++ +R+DLR+ C+ ++DP TD+DDAL LS+G VG
Sbjct: 444 FSQAVLSFLPRMPWSITEEDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELSNGNLEVG 503
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDRLAFS
Sbjct: 504 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCI 563
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQL 425
W++N +++ ++VI S L+Y AQ ID + T G QL
Sbjct: 564 WEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTSLRGLNQL 616
Score = 330 (121.2 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 87/246 (35%), Positives = 124/246 (50%)
Query: 395 CKLSYEHAQDIIDGKF-----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
C H +I+ +F + ++S T E ++ D+ S++ L +++KILK
Sbjct: 562 CIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTSLRGLNQLAKILK 621
Query: 450 DKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
R GAL L + + F D E P D + N + EEFMLLAN + A+ I
Sbjct: 622 KGRIEKGALTLSSPEIRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEE 681
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 568
F + ALLR+HPAP LQ+ T ++ SL++A D+ +
Sbjct: 682 FSEHALLRKHPAPPPSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAESP---DFPYLNT 738
Query: 569 LINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
L+ ATR M A YFCSG D D+ HY LA P+YTHFTSP+RRY D++VHR L A+
Sbjct: 739 LLRILATRCMMQAVYFCSGM---DNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAI 795
Query: 628 EAEKLY 633
A+ Y
Sbjct: 796 GADCTY 801
Score = 52 (23.4 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 115 RPTGRVVSIIERSPR 129
RPTGRVV II+R+ R
Sbjct: 340 RPTGRVVGIIKRNWR 354
>GENEDB_PFALCIPARUM|PFF0745c [details] [associations]
symbol:PFF0745c "ribonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0006396 "RNA processing"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0004540 EMBL:AL844505 InterPro:IPR022966
PROSITE:PS01175 InterPro:IPR013223 Pfam:PF08206 RefSeq:XP_966140.2
EnsemblProtists:PFF0745c:mRNA GeneID:3885866 KEGG:pfa:PFF0745c
EuPathDB:PlasmoDB:PF3D7_0615400 Uniprot:C6KSZ5
Length = 2733
Score = 218 (81.8 bits), Expect = 2.7e-35, Sum P(5) = 2.7e-35
Identities = 62/201 (30%), Positives = 96/201 (47%)
Query: 438 IKSLYEVSKILKDKRFT---DGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFM 494
IK LY++ KI K R +G++ N K F+ +P V N++ EE M
Sbjct: 2363 IKHLYDMHKITKGARNIRRKNGSMFFNNDKINFILSNSRSPIGIVRKKYTFSNYMIEELM 2422
Query: 495 LLANKTAA-EVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLE 553
L ANK A + D ++ R H + L + K + + Q + L+
Sbjct: 2423 LSANKLIAIRQYFSKYRDISVFRSHNLNDAIDLNDIMDLLKKSDIHFEFHDLRQIMKFLD 2482
Query: 554 QARE--KLKDDYVLFDILINYATRPMQLASYFCSGDFKDDT-DWGHYALAFPVYTHFTSP 610
+ ++ K K + V +DI+ Y + M A Y KD+ HYAL+F +YTHFTSP
Sbjct: 2483 EKKKYFKQKKNNV-YDIVSAYLKKKMIRAEYHTYKYIKDNNMSTYHYALSFLLYTHFTSP 2541
Query: 611 LRRYPDLVVHRTLNAALEAEK 631
+RRYPD++VHR + + E+
Sbjct: 2542 IRRYPDILVHRVIKKIISDEQ 2562
Score = 180 (68.4 bits), Expect = 2.7e-35, Sum P(5) = 2.7e-35
Identities = 40/98 (40%), Positives = 63/98 (64%)
Query: 311 VGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFS 370
VGVHI DVS+F+ ++LDI+A+ R+ ++Y+ PM+ +LSEE+ SL+P +RL S
Sbjct: 1985 VGVHITDVSFFIKENSSLDIDARNRAMTIYLTHTCFPMISKILSEELCSLDPVNNRLCLS 2044
Query: 371 IFWDLNSAGDVVDR--WIGRTVIRSCCKLSYEHAQDII 406
IF+ ++S+G + +I ++I S K SYE II
Sbjct: 2045 IFFYMDSSGKIDHNSFFIKESIINSKVKFSYEEVYFII 2082
Score = 147 (56.8 bits), Expect = 2.7e-35, Sum P(5) = 2.7e-35
Identities = 40/135 (29%), Positives = 68/135 (50%)
Query: 177 YPKMVVLVKDLPDSIKKRLEEGD-ATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ K + L+K L + I K + + + I +LV +I W+ +P+ ++ + G+
Sbjct: 1295 FKKNIPLIKVLNEDIIKFMNKYNICDISNQLVYIKIFVWDINDTYPEGKIVEILGQNDIF 1354
Query: 236 EPQINAILYENAICCS---GFSPESLSCLPCVPW--EVPQEELLSRKDLRNFCIFTIDPS 290
NAIL + + + + L L ++ E++ R DL N CIFTIDP
Sbjct: 1355 HNMQNAILLNHNLNFNLKDALEDQYLKDLKNKDTYKQIISEQIKKRTDLTNTCIFTIDPD 1414
Query: 291 TATDLDDALSIERLS 305
TA DLDDA++I ++S
Sbjct: 1415 TARDLDDAININKIS 1429
Score = 51 (23.0 bits), Expect = 2.7e-35, Sum P(5) = 2.7e-35
Identities = 14/76 (18%), Positives = 31/76 (40%)
Query: 683 PCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVL-LSEARVLALGPRFMTIY 741
P IL + +CN+ K + + C + + L+K + ++ + +IY
Sbjct: 2581 PDVGILEKICENCNNCKAKSKKAQVDCEIAFFCLYLQKLSCPGYNRGIIMDIYKEKSSIY 2640
Query: 742 IEKLAIERRIYYDEVE 757
+ + E +Y+ E
Sbjct: 2641 FKSFSFENNLYHSGFE 2656
Score = 40 (19.1 bits), Expect = 1.9e-24, Sum P(5) = 1.9e-24
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 183 LVKDLPDSIKKRLEE 197
L+K+L D++KK+ EE
Sbjct: 517 LLKNLNDALKKKDEE 531
Score = 40 (19.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 12 EDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSE 60
+D NLP + N +H + + +E +N +H +D S+
Sbjct: 2206 QDYNLPEQNNILHEQNNTLHEQNNTLHEQNNTLHEQNHTLHEQNDIISD 2254
Score = 39 (18.8 bits), Expect = 2.7e-35, Sum P(5) = 2.7e-35
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 31 KSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMI 67
K + Y+Y C L + + + SS +A E I
Sbjct: 314 KELIVTKYDYLLCVSLFSSYLINKEKSSKDADKYEQI 350
Score = 38 (18.4 bits), Expect = 3.4e-35, Sum P(5) = 3.4e-35
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 5 SNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSY 38
+NN++ V N+ G S + K KV+ ++
Sbjct: 55 NNNNNNVPTENINISNKGSKSHLVKVVKKVEQNF 88
Score = 38 (18.4 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 429 FEWSDVVRSIKSLYEVSKILKDKR 452
FE+ D+ + +K L E K K K+
Sbjct: 2469 FEFHDLRQIMKFLDEKKKYFKQKK 2492
Score = 38 (18.4 bits), Expect = 2.5e-10, Sum P(5) = 2.5e-10
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 440 SLYEVSKILKDKR 452
SL E SKI+K KR
Sbjct: 891 SLEEPSKIIKKKR 903
>GENEDB_PFALCIPARUM|MAL13P1.289 [details] [associations]
symbol:MAL13P1.289 "mitotic control protein
dis3 homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 RefSeq:XP_001350300.2
EnsemblProtists:MAL13P1.289:mRNA GeneID:813851 KEGG:pfa:MAL13P1.289
EuPathDB:PlasmoDB:PF3D7_1359300 HOGENOM:HOG000281701
ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 427 (155.4 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 118/349 (33%), Positives = 176/349 (50%)
Query: 191 IKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICC 250
IK +LE+ + + V ID W+ S P + V G ++E + I E I
Sbjct: 513 IKAQLED---ELRNKRVIVTIDNWDIYSRNPLGRCISVLGNCDDIETETKLIYNEYNIST 569
Query: 251 SGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLS-DG-- 307
FS CLP W +P EE R D RN F+IDP D+DDALS+E L DG
Sbjct: 570 REFSENVYKCLPPNNWVIPDEEYEKRNDFRNVLTFSIDPPGCQDIDDALSVEFLQQDGNI 629
Query: 308 ----ISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 363
I R+GVHIADVSYFV + +D+EA R T+VY++ +++ MLP LL+ + SL G
Sbjct: 630 EKNYIYRIGVHIADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTNLCSLVEG 689
Query: 364 VDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWP 423
+RL +S + N D++D + + +I+S SYE AQ++ID K D S+T
Sbjct: 690 EERLTYSCIFCFNKDFDIIDISVKKCIIKSNKSFSYEQAQNVIDDKND--QSDTAKS--L 745
Query: 424 QLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGR 483
+L + + + +K + L+ + T+ E + F + PY
Sbjct: 746 RLLNK-----IAKHLKQKWSNDGALELRGNTEVLFEFEAND--FSKAKNLKPYVCY---- 794
Query: 484 EDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAF 532
+ N L E FMLLAN++ A +I + F +++LRRHP P L+E +
Sbjct: 795 -ETNKLIEAFMLLANRSVARIIFQNFKAASVLRRHPPPKHEYLKELNDY 842
Score = 41 (19.5 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 16/85 (18%), Positives = 39/85 (45%)
Query: 1 MKGFSNNSSIVED---SNLPTEANGMH-SDICKG-----KSKVDVSYEYSNCTLLSEKGI 51
+K SNN + ED +++P + +++ KG K+K + + E+ I
Sbjct: 183 IKVISNNKLLQEDCYNNDIPCSTLFEYVNELMKGNDYKKKNKEGKKFNMDTLKMYFEEDI 242
Query: 52 HHDDDSSSEAYNQEMIEREGYNYIN 76
++ + S + + +++ Y+ +N
Sbjct: 243 LNEHNDSKADHTESTCDQKTYHTLN 267
Score = 37 (18.1 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 13/67 (19%), Positives = 27/67 (40%)
Query: 696 NDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDE 755
ND+ R A V + ++ +KK ++ A + L + I++ E Y
Sbjct: 959 NDKYRNARFASRASVDFFSYLYIKKIGNQITNAVITNLKKNGIQIFLIDYFTEGICYLKR 1018
Query: 756 VEGLIVE 762
+G + +
Sbjct: 1019 KDGFLFD 1025
>UNIPROTKB|Q8IDB6 [details] [associations]
symbol:MAL13P1.289 "Mitotic control protein dis3 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0004527 GO:GO:0000178
GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966 PROSITE:PS01175
KO:K12585 RefSeq:XP_001350300.2 EnsemblProtists:MAL13P1.289:mRNA
GeneID:813851 KEGG:pfa:MAL13P1.289 EuPathDB:PlasmoDB:PF3D7_1359300
HOGENOM:HOG000281701 ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 427 (155.4 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 118/349 (33%), Positives = 176/349 (50%)
Query: 191 IKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICC 250
IK +LE+ + + V ID W+ S P + V G ++E + I E I
Sbjct: 513 IKAQLED---ELRNKRVIVTIDNWDIYSRNPLGRCISVLGNCDDIETETKLIYNEYNIST 569
Query: 251 SGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLS-DG-- 307
FS CLP W +P EE R D RN F+IDP D+DDALS+E L DG
Sbjct: 570 REFSENVYKCLPPNNWVIPDEEYEKRNDFRNVLTFSIDPPGCQDIDDALSVEFLQQDGNI 629
Query: 308 ----ISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 363
I R+GVHIADVSYFV + +D+EA R T+VY++ +++ MLP LL+ + SL G
Sbjct: 630 EKNYIYRIGVHIADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTNLCSLVEG 689
Query: 364 VDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWP 423
+RL +S + N D++D + + +I+S SYE AQ++ID K D S+T
Sbjct: 690 EERLTYSCIFCFNKDFDIIDISVKKCIIKSNKSFSYEQAQNVIDDKND--QSDTAKS--L 745
Query: 424 QLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGR 483
+L + + + +K + L+ + T+ E + F + PY
Sbjct: 746 RLLNK-----IAKHLKQKWSNDGALELRGNTEVLFEFEAND--FSKAKNLKPYVCY---- 794
Query: 484 EDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAF 532
+ N L E FMLLAN++ A +I + F +++LRRHP P L+E +
Sbjct: 795 -ETNKLIEAFMLLANRSVARIIFQNFKAASVLRRHPPPKHEYLKELNDY 842
Score = 41 (19.5 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 16/85 (18%), Positives = 39/85 (45%)
Query: 1 MKGFSNNSSIVED---SNLPTEANGMH-SDICKG-----KSKVDVSYEYSNCTLLSEKGI 51
+K SNN + ED +++P + +++ KG K+K + + E+ I
Sbjct: 183 IKVISNNKLLQEDCYNNDIPCSTLFEYVNELMKGNDYKKKNKEGKKFNMDTLKMYFEEDI 242
Query: 52 HHDDDSSSEAYNQEMIEREGYNYIN 76
++ + S + + +++ Y+ +N
Sbjct: 243 LNEHNDSKADHTESTCDQKTYHTLN 267
Score = 37 (18.1 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 13/67 (19%), Positives = 27/67 (40%)
Query: 696 NDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDE 755
ND+ R A V + ++ +KK ++ A + L + I++ E Y
Sbjct: 959 NDKYRNARFASRASVDFFSYLYIKKIGNQITNAVITNLKKNGIQIFLIDYFTEGICYLKR 1018
Query: 756 VEGLIVE 762
+G + +
Sbjct: 1019 KDGFLFD 1025
>RGD|1304646 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISO]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0071034 "CUT catabolic process"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 RGD:1304646
GO:GO:0003723 GO:GO:0004540 SMART:SM00670 IPI:IPI00392641
PRIDE:D3ZAM5 Ensembl:ENSRNOT00000012182 UCSC:RGD:1304646
Uniprot:D3ZAM5
Length = 565
Score = 356 (130.4 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 73/175 (41%), Positives = 106/175 (60%)
Query: 194 RLEEGDAT-IEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A+ +E + ID W S +P H + G GE E + +L E+ +
Sbjct: 383 RIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQP 442
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + +E++ +R+DLR+ C+ ++DP TD+DDAL LS+G VG
Sbjct: 443 FSQAVLSFLPKMPWSITEEDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELSNGNLEVG 502
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRL 367
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDRL
Sbjct: 503 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRL 557
Score = 52 (23.4 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 115 RPTGRVVSIIERSPR 129
RPTGRVV II+R+ R
Sbjct: 339 RPTGRVVGIIKRNWR 353
>UNIPROTKB|G4NDV8 [details] [associations]
symbol:MGG_00193 "Mitotic control protein dis3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773
PROSITE:PS50126 SMART:SM00955 InterPro:IPR006596 GO:GO:0005730
EMBL:CM001235 GO:GO:0004521 GO:GO:0000049 GO:GO:0071039
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 KO:K12585
SMART:SM00670 GO:GO:0071028 RefSeq:XP_003718924.1
ProteinModelPortal:G4NDV8 SMR:G4NDV8 EnsemblFungi:MGG_00193T0
GeneID:2674544 KEGG:mgr:MGG_00193 Uniprot:G4NDV8
Length = 990
Score = 368 (134.6 bits), Expect = 4.0e-30, P = 4.0e-30
Identities = 97/281 (34%), Positives = 144/281 (51%)
Query: 133 IVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIK 192
+VG + N W Y G + + ++S+ +E + L P K PK+ + + + + +
Sbjct: 388 VVGVIKRN-WRQYVGHIDQSSV-SKSATQGRKQEVVFLIPMDKKIPKIRLRTRQVGELLG 445
Query: 193 KRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
KR+ LV ID W+ +S P H + G + A+L E +
Sbjct: 446 KRI----------LVT--IDAWDRDSRHPVGHFVRSLGELETKAAETEALLLEYDVQYRP 493
Query: 253 FSPESLSCLPCV--PWEVPQEE----LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSD 306
F L CLP W+VP R+DLR I +IDP D+DDAL L +
Sbjct: 494 FPKTVLDCLPKEGHDWKVPASTDDPGWRDREDLRGLLICSIDPIGCQDIDDALHARPLPN 553
Query: 307 GISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDR 366
G VGVHIADVS+FV P A+D EA +R T+VY++ ++I MLP+LL ++ SL P V+R
Sbjct: 554 GNFEVGVHIADVSHFVKPSNAMDTEASIRGTTVYLVDKRIDMLPMLLGTDLCSLKPYVER 613
Query: 367 LAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
AFS+ W+L D+V+ ++VI+S SYE AQ +D
Sbjct: 614 FAFSVLWELTPDADIVNARFTKSVIKSREAFSYEAAQIRVD 654
Score = 317 (116.6 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 135/497 (27%), Positives = 212/497 (42%)
Query: 154 KKN-RSSLSVPDREYIQLTPTHPKYPKMVVLV---KDLPDSIKKRLEEGDATIEMELVAA 209
K+N R + D+ + + T + ++V L+ K +P I+ R + + ++
Sbjct: 393 KRNWRQYVGHIDQSSVSKSATQGRKQEVVFLIPMDKKIP-KIRLRTRQVGELLGKRILVT 451
Query: 210 RIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV--PWE 267
ID W+ +S P H + G + A+L E + F L CLP W+
Sbjct: 452 -IDAWDRDSRHPVGHFVRSLGELETKAAETEALLLEYDVQYRPFPKTVLDCLPKEGHDWK 510
Query: 268 VPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFV--LPG 325
VP T DP D +D + L I +G D + LP
Sbjct: 511 VPAS--------------TDDPGWR-DREDLRGL--LICSIDPIGCQDIDDALHARPLPN 553
Query: 326 TALDIEAQVRSTSVYML-QRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 384
++ + S ++ + + V ++ +D L + DL S V+R
Sbjct: 554 GNFEVGVHIADVSHFVKPSNAMDTEASIRGTTVYLVDKRIDMLPMLLGTDLCSLKPYVER 613
Query: 385 WIGRTVIRSCCKLSYEHAQDIIDGKFD---VESSNTLGEGWPQLY--GQFEWSDVVRSIK 439
+ +V+ +L+ + DI++ +F ++S Q+ + ++ I+
Sbjct: 614 F-AFSVL---WELTPD--ADIVNARFTKSVIKSREAFSYEAAQIRVDDASQQDELTTGIR 667
Query: 440 SLYEVSKILKDKRFTDGALRLENSK-PVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLAN 498
+L +SK LK KR GAL L + + V + E P D + L EEFMLLAN
Sbjct: 668 TLLALSKKLKQKRMDAGALSLSSPEVKVQMESETSDPIDIKTKVHLETMSLVEEFMLLAN 727
Query: 499 KTAAEVIARAFPDSALLRRHPAPNMRKLREF-EAFCSKHGLQLDTSSSGQFHQSLEQARE 557
+ A I A P +A+LRRH AP E K G +L SS SL+
Sbjct: 728 ISVARKIYEASPQTAILRRHGAPPKTNFDELANQLKVKKGFELRVDSSRALADSLDTC-- 785
Query: 558 KLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPD 616
+ + F+ L+ ATR M A YFCSG + ++ HY LA +YTHFTSP+RRY D
Sbjct: 786 -VDPNNPFFNTLVRIMATRCMMSAEYFCSGT-QAYPEFRHYGLASEIYTHFTSPIRRYAD 843
Query: 617 LVVHRTLNAALEAEKLY 633
LV HR L AA+ E ++
Sbjct: 844 LVAHRQLAAAIGYEAVH 860
>TIGR_CMR|GSU_1485 [details] [associations]
symbol:GSU_1485 "ribonuclease R, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0008997 "ribonuclease R
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573
OMA:FGFLIPD TIGRFAMs:TIGR02063 HOGENOM:HOG000071119
RefSeq:NP_952536.1 ProteinModelPortal:Q74D34 GeneID:2686169
KEGG:gsu:GSU1485 PATRIC:22025817 ProtClustDB:CLSK828384
BioCyc:GSUL243231:GH27-1468-MONOMER Uniprot:Q74D34
Length = 763
Score = 361 (132.1 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 114/384 (29%), Positives = 185/384 (48%)
Query: 205 ELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV 264
++V A + W E + ++ V G + E ++ I+ ++ + F + L+
Sbjct: 173 QVVVAELTAWPTERKKAEGRIVEVLGSPDDPEVEVLTIIRKHDLPYE-FPVDVLTEARST 231
Query: 265 PWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLP 324
P EV + ++ R DLR TID TA D DDA+S++R G R+ V IADVS++V P
Sbjct: 232 PQEVRRGDVAKRVDLRERLTVTIDGETARDFDDAVSVQREKGGDIRLWVSIADVSHYVKP 291
Query: 325 GTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 384
G+ALD EA +R TSVY R IPMLP LS + SLNP V+RL + +G +
Sbjct: 292 GSALDREAYLRGTSVYFPDRCIPMLPEELSNGICSLNPQVERLTLTAEMLFTRSGAIKSS 351
Query: 385 WIGRTVIRSCCKLSYEHAQDI-IDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 443
+VIRS +L+Y + + +DG + +N +V ++ + E
Sbjct: 352 SFYPSVIRSAARLTYTTVRKVLVDGDPEAIKANR---------------HLVDDLEVMKE 396
Query: 444 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAE 503
++ L +KR G++ + +P + D G D + S R + + EEFML AN+ A
Sbjct: 397 LALRLMEKRKKRGSIDFDLPEPQIVLDLQGEMVDIIRSERNLAHRIIEEFMLAANEAVAS 456
Query: 504 VIA-RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL----DTSSSGQFHQSLEQAREK 558
I R P +L R H P+ KL +F F G D + + +++A K
Sbjct: 457 HIEERGIP--SLYRVHEPPDPTKLTDFREFIFNFGYAFRMDGDRVDPHELQRLIDEAEGK 514
Query: 559 LKDDYVLFDILINYATRPMQLASY 582
++ ++ ++L+ R M+ A Y
Sbjct: 515 -PEERMINEVLL----RCMKQARY 533
Score = 210 (79.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 68/227 (29%), Positives = 107/227 (47%)
Query: 434 VVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEF 493
+V ++ + E++ L +KR G++ + +P + D G D + S R + + EEF
Sbjct: 387 LVDDLEVMKELALRLMEKRKKRGSIDFDLPEPQIVLDLQGEMVDIIRSERNLAHRIIEEF 446
Query: 494 MLLANKTAAEVIA-RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL----DTSSSGQF 548
ML AN+ A I R P +L R H P+ KL +F F G D +
Sbjct: 447 MLAANEAVASHIEERGIP--SLYRVHEPPDPTKLTDFREFIFNFGYAFRMDGDRVDPHEL 504
Query: 549 HQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 608
+ +++A K ++ ++ ++L+ R M+ A Y + GH+ LA YTHFT
Sbjct: 505 QRLIDEAEGK-PEERMINEVLL----RCMKQARY-------SHENLGHFGLAARCYTHFT 552
Query: 609 SPLRRYPDLVVHRTLNAALEAEKLYWKHRRM---LPKNNHREGVRGR 652
SP+RRYPDLVVHR L L + R+ LP+ + R R
Sbjct: 553 SPIRRYPDLVVHRILKDILAGAMTEKEQERLAAALPETAEQTSRRER 599
>UNIPROTKB|F2Z2C0 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 SMART:SM00670 EMBL:AL391384
HGNC:HGNC:20604 ChiTaRS:DIS3 IPI:IPI00978109
ProteinModelPortal:F2Z2C0 SMR:F2Z2C0 PRIDE:F2Z2C0
Ensembl:ENST00000490646 ArrayExpress:F2Z2C0 Bgee:F2Z2C0
Uniprot:F2Z2C0
Length = 559
Score = 347 (127.2 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 72/174 (41%), Positives = 104/174 (59%)
Query: 194 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A T+E + ID W S +P H + G GE E + +L E+ +
Sbjct: 384 RIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQP 443
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
FS LS LP +PW + ++++ +R+DLR+ CI ++DP TD+DDAL L +G VG
Sbjct: 444 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVG 503
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDR 366
VHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P LLS + SL VDR
Sbjct: 504 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDR 557
Score = 52 (23.4 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 102 ERLSAMISSYPTKRPTGRVVSIIERSPR 129
ER+ S +PTGRVV II+R+ R
Sbjct: 327 ERMLKTAVSEKMLKPTGRVVGIIKRNWR 354
>TIGR_CMR|CBU_1091 [details] [associations]
symbol:CBU_1091 "ribonuclease R" species:227377 "Coxiella
burnetii RSA 493" [GO:0008997 "ribonuclease R activity"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD
TIGRFAMs:TIGR02063 RefSeq:NP_820090.2 ProteinModelPortal:Q83CM3
PRIDE:Q83CM3 GeneID:1208992 KEGG:cbu:CBU_1091 PATRIC:17930913
ProtClustDB:CLSK914532 BioCyc:CBUR227377:GJ7S-1084-MONOMER
Uniprot:Q83CM3
Length = 749
Score = 210 (79.0 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 57/146 (39%), Positives = 76/146 (52%)
Query: 264 VPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVL 323
+P E+ + + RKDLR TID A D DDA+ E S G ++ V IADVS++V
Sbjct: 265 LPVELMEYDKKGRKDLRKLPFMTIDGEDARDFDDAVYCESKSSGW-KLYVAIADVSHYVS 323
Query: 324 PGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD 383
+ALD E Q+R SVY + IPMLP LS + SL P DRLA L + G V
Sbjct: 324 RESALDKEGQLRGNSVYFPSKVIPMLPEALSNNLCSLVPNKDRLAIVCEIHLTAKGKVSK 383
Query: 384 RWIGRTVIRSCCKLSYEHAQDIIDGK 409
VI S +L+Y ++ G+
Sbjct: 384 YQFYEAVIHSHARLTYTQVAAMLRGE 409
Score = 203 (76.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 61/200 (30%), Positives = 104/200 (52%)
Query: 433 DVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEE 492
+++ IK+L ++ + L +R GA+ E ++ FD+ G V R + + + EE
Sbjct: 415 EMLPHIKNLDQLYQNLLRQRINRGAIEFETTETRIQFDQKGKIKRIVPVVRNEAHRIIEE 474
Query: 493 FMLLANKTAAEVIA-RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL---DTSSSGQF 548
ML+AN +A+ + + P L R H P+ +KL + + F GL+L D + +
Sbjct: 475 CMLVANVSASHFLQEKNIP--TLYRVHEGPDEQKLHDLKQFLRAFGLRLTGGDKPTPMDY 532
Query: 549 HQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 608
+ L + EK D ++L +++ R ++ A Y D GH+ L++ Y HFT
Sbjct: 533 AKLLLRI-EKRPDAHLLQTVML----RSLRQAIY-------TPEDGGHFGLSYERYCHFT 580
Query: 609 SPLRRYPDLVVHRTLNAALE 628
SP+RRYPDL+VHR + AL+
Sbjct: 581 SPIRRYPDLLVHRGIRHALQ 600
Score = 45 (20.9 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 108 ISSYPTKRPTGRVVSIIERSPRRDGIVG 135
I++ +RP G +V I+ER+ + +VG
Sbjct: 146 ITNPKERRPEGAIVEILERNTHQ--VVG 171
>SGD|S000002701 [details] [associations]
symbol:SSD1 "Translational repressor with a role in polar
growth and wall integrity" species:4932 "Saccharomyces cerevisiae"
[GO:0005933 "cellular bud" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0000900 "translation
repressor activity, nucleic acid binding" evidence=IGI] [GO:0060237
"regulation of fungal-type cell wall organization" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IGI]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 SGD:S000002701 GO:GO:0005634 GO:GO:0005935
GO:GO:0051301 GO:GO:0007067 EMBL:BK006938 GO:GO:0048027
GO:GO:0000932 GO:GO:0004540 GO:GO:0008298 GO:GO:0060237
GO:GO:0010494 GO:GO:0000900 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 OrthoDB:EOG4MGWGN EMBL:U51031 EMBL:M60318
EMBL:M63004 PIR:A39578 RefSeq:NP_010579.1 ProteinModelPortal:P24276
DIP:DIP-6449N IntAct:P24276 MINT:MINT-605909 STRING:P24276
PaxDb:P24276 PeptideAtlas:P24276 PRIDE:P24276 EnsemblFungi:YDR293C
GeneID:851887 KEGG:sce:YDR293C CYGD:YDR293c
GeneTree:ENSGT00530000069300 HOGENOM:HOG000207194 OMA:DIFICGS
NextBio:969865 Genevestigator:P24276 GermOnline:YDR293C
Uniprot:P24276
Length = 1250
Score = 217 (81.4 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 69/223 (30%), Positives = 100/223 (44%)
Query: 408 GKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDG-ALRLENSKPV 466
G+ + SN L QL + + ++ E+++ +R D A L +
Sbjct: 802 GESTISPSNILS--LEQLDEKLSTGSPTSYLSTVQEIARSFYARRINDPEATLLPTLSLL 859
Query: 467 FLFDEYGTPYDSVLSGREDLNFL-FEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRK 525
D+ D + R L F+ E N T AE I D ALLRR P K
Sbjct: 860 ESLDDEKVKVDLNILDRT-LGFVVINEIKRKVNSTVAEKIYTKLGDLALLRRQMQPIATK 918
Query: 526 LREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI-LINYATRPMQLASYFC 584
+ F G DT+++ + + + K+KDD V I ++ + T P A YF
Sbjct: 919 MASFRKKIQNFGYNFDTNTADELIKGVL----KIKDDDVRVGIEILLFKTMPR--ARYFI 972
Query: 585 SGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
+G D +GHYAL P+YTHFT+P+RRY D VVHR L A +
Sbjct: 973 AGKVDPD-QYGHYALNLPIYTHFTAPMRRYADHVVHRQLKAVI 1014
Score = 175 (66.7 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 75/298 (25%), Positives = 133/298 (44%)
Query: 118 GRVVSIIERSPRR--DGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
G VV++++R P + G +G L +Q N D K S P + + PT
Sbjct: 541 GHVVAVLDRIPGQLFSGTLGLLRPSQQAN------SDNNKPPQS---PKIAWFK--PTDK 589
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
K P + + + P K +E D E +L A I W S P ++ G +
Sbjct: 590 KVPLIAIPTELAP---KDFVENADKYSE-KLFVASIKRWPITSLHPFGILVSELGDIHDP 645
Query: 236 EPQINAILYENAICCSGF----SPESLSCLPCV-PWEVPQEELLSRK---DLRNFCIFTI 287
+ +I++IL +N + + +P+ P P + E L R+ D + IF I
Sbjct: 646 DTEIDSILRDNNFLSNEYLDQKNPQKEK--PSFQPLPLTAESLEYRRNFTDTNEYNIFAI 703
Query: 288 DPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIP 347
+ AL + +G +G H+ DV+ + G+++D A+ RS++V+M Q+ +
Sbjct: 704 SELGWVS-EFALHVRNNGNGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVN 762
Query: 348 MLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQD 404
+LP ++E+ SL PG + S+ + L+S+ + W+G + I LS E +
Sbjct: 763 LLPQSFNDEL-SLAPGKESATLSVVYTLDSSTLRIKSTWVGESTISPSNILSLEQLDE 819
Score = 54 (24.1 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 29/132 (21%), Positives = 51/132 (38%)
Query: 641 PKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKL 700
P + + V R L + +D E +E + S + CA A H L
Sbjct: 997 PMRRYADHVVHRQLKAVIHDTPYTEDMEALKITSEYC-NFKKDCAYQAQEQAIHL----L 1051
Query: 701 ACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLI 760
C+ + D + LL+ A VL + ++I + IE+R++ D++ +
Sbjct: 1052 LCKTIND---------MGNTTGQLLTMATVLQVYESSFDVFIPEFGIEKRVHGDQLPLIK 1102
Query: 761 VEWLETTSTLVL 772
E+ T L L
Sbjct: 1103 AEFDGTNRVLEL 1114
>UNIPROTKB|P21499 [details] [associations]
symbol:rnr species:83333 "Escherichia coli K-12"
[GO:0004540 "ribonuclease activity" evidence=IMP] [GO:0016896
"exoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IDA] [GO:0008997 "ribonuclease R activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0034458 "3'-5' RNA helicase
activity" evidence=IDA] [GO:0034470 "ncRNA processing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0006402 "mRNA catabolic process" evidence=IMP] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA;IEP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009405 "pathogenesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IDA] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 GO:GO:0009405
GO:GO:0006950 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0016556 GO:GO:0003723 EMBL:U14003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0000154 GO:GO:0008859 EMBL:J04199
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 PIR:S56404
RefSeq:NP_418600.4 RefSeq:YP_492321.1 ProteinModelPortal:P21499
SMR:P21499 DIP:DIP-10733N IntAct:P21499 PRIDE:P21499
EnsemblBacteria:EBESCT00000001517 EnsemblBacteria:EBESCT00000016566
GeneID:12932898 GeneID:948692 KEGG:ecj:Y75_p4065 KEGG:eco:b4179
PATRIC:32123931 EchoBASE:EB1239 EcoGene:EG11259
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD ProtClustDB:PRK11642
BioCyc:EcoCyc:EG11259-MONOMER BioCyc:ECOL316407:JW5741-MONOMER
BioCyc:MetaCyc:EG11259-MONOMER Genevestigator:P21499 GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 Uniprot:P21499
Length = 813
Score = 332 (121.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 92/274 (33%), Positives = 139/274 (50%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EVP+E R DLR+ + TID A D DDA+ E+ G R+ V IADVSY+V P T
Sbjct: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
LD EA+ R TSVY + IPMLP +LS + SLNP VDRL ++S G +
Sbjct: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y I+ G D+ +++ +V+ ++ L+ + K
Sbjct: 371 YEAVMSSHARLTYTKVWHILQGDQDLRE---------------QYAPLVKHLEELHNLYK 415
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 506
+L R G + E+ + F+F+ + R D + L EE M+LAN +AA +
Sbjct: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL 540
+A + AL R H P+ + F + ++ GL+L
Sbjct: 476 KA-KEPALFRIHDKPSTEAITSFRSVLAELGLEL 508
Score = 217 (81.4 bits), Expect = 6.6e-14, P = 6.6e-14
Identities = 60/205 (29%), Positives = 104/205 (50%)
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFL 489
+++ +V+ ++ L+ + K+L R G + E+ + F+F+ + R D + L
Sbjct: 399 QYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKL 458
Query: 490 FEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ-- 547
EE M+LAN +AA + +A + AL R H P+ + F + ++ GL+L + +
Sbjct: 459 IEECMILANISAARFVEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR 517
Query: 548 -FHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTH 606
+ + LE ++ D +L +L+ R M+ A Y D + GH+ LA Y H
Sbjct: 518 DYAELLESVADR-PDAEMLQTMLL----RSMKQAIY-------DPENRGHFGLALQSYAH 565
Query: 607 FTSPLRRYPDLVVHRTLNAALEAEK 631
FTSP+RRYPDL +HR + L E+
Sbjct: 566 FTSPIRRYPDLTLHRAIKYLLAKEQ 590
Score = 50 (22.7 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 515 LRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQ 554
+RR+P + + ++ + G Q +T+ +G +H S+E+
Sbjct: 570 IRRYPDLTLHRAIKY-LLAKEQGHQGNTTETGGYHYSMEE 608
>UNIPROTKB|Q9KNY1 [details] [associations]
symbol:rnr "Ribonuclease R" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 323 (118.8 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 98/275 (35%), Positives = 138/275 (50%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EVP+E R DLR + TID A D DDA+ E G R+ V IADVSY+V P T
Sbjct: 258 EVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDT 317
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
ALD EA R SVY + +PMLP +LS + SLNP VDRL ++ G +
Sbjct: 318 ALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKH 377
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y +I++G D E L E + L E + +Y+V K
Sbjct: 378 YEAVMNSHARLTYTKVHEILEG--DEE----LRERYKALVPHLE------ELHKMYQVLK 425
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSG-REDLNFLFEEFMLLANKTAAEVI 505
+D+R GA+ E + F+F+ +S+ R D + L EE M+LAN +A ++
Sbjct: 426 SARDER---GAIEFETVETKFIFNAQ-RKIESIEPVVRNDAHKLIEECMILANIASASLV 481
Query: 506 ARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL 540
+A ++AL R H P +L F F + GL L
Sbjct: 482 EKA-KEAALYRVHEPPGEERLTGFRDFLGELGLDL 515
Score = 212 (79.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 74/258 (28%), Positives = 128/258 (49%)
Query: 375 LNSAGDVVDR--WIGRTVIRSCCKLS-YEHAQDIIDG--KFDVESSNTLGEGWPQLYGQF 429
L S VDR + + KLS Y+H + +++ + + + EG +L ++
Sbjct: 348 LCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERY 407
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSG-REDLNF 488
+ +V ++ L+++ ++LK R GA+ E + F+F+ +S+ R D +
Sbjct: 408 K--ALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQ-RKIESIEPVVRNDAHK 464
Query: 489 LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS---SS 545
L EE M+LAN +A ++ +A ++AL R H P +L F F + GL L S
Sbjct: 465 LIEECMILANIASASLVEKA-KEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSP 523
Query: 546 GQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYT 605
+ ++Q E+ D ++ +L+ R M+ A Y + D + GH+ LA Y
Sbjct: 524 TDYANLMKQIGER-PDKELIQTMLL----RSMKQAVY--NAD-----NAGHFGLALKRYA 571
Query: 606 HFTSPLRRYPDLVVHRTL 623
HFTSP+RRYPDL++HR +
Sbjct: 572 HFTSPIRRYPDLLLHRAI 589
>TIGR_CMR|VC_2599 [details] [associations]
symbol:VC_2599 "ribonuclease R" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 323 (118.8 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 98/275 (35%), Positives = 138/275 (50%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EVP+E R DLR + TID A D DDA+ E G R+ V IADVSY+V P T
Sbjct: 258 EVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDT 317
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
ALD EA R SVY + +PMLP +LS + SLNP VDRL ++ G +
Sbjct: 318 ALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKH 377
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y +I++G D E L E + L E + +Y+V K
Sbjct: 378 YEAVMNSHARLTYTKVHEILEG--DEE----LRERYKALVPHLE------ELHKMYQVLK 425
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSG-REDLNFLFEEFMLLANKTAAEVI 505
+D+R GA+ E + F+F+ +S+ R D + L EE M+LAN +A ++
Sbjct: 426 SARDER---GAIEFETVETKFIFNAQ-RKIESIEPVVRNDAHKLIEECMILANIASASLV 481
Query: 506 ARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL 540
+A ++AL R H P +L F F + GL L
Sbjct: 482 EKA-KEAALYRVHEPPGEERLTGFRDFLGELGLDL 515
Score = 212 (79.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 74/258 (28%), Positives = 128/258 (49%)
Query: 375 LNSAGDVVDR--WIGRTVIRSCCKLS-YEHAQDIIDG--KFDVESSNTLGEGWPQLYGQF 429
L S VDR + + KLS Y+H + +++ + + + EG +L ++
Sbjct: 348 LCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERY 407
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSG-REDLNF 488
+ +V ++ L+++ ++LK R GA+ E + F+F+ +S+ R D +
Sbjct: 408 K--ALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQ-RKIESIEPVVRNDAHK 464
Query: 489 LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS---SS 545
L EE M+LAN +A ++ +A ++AL R H P +L F F + GL L S
Sbjct: 465 LIEECMILANIASASLVEKA-KEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSP 523
Query: 546 GQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYT 605
+ ++Q E+ D ++ +L+ R M+ A Y + D + GH+ LA Y
Sbjct: 524 TDYANLMKQIGER-PDKELIQTMLL----RSMKQAVY--NAD-----NAGHFGLALKRYA 571
Query: 606 HFTSPLRRYPDLVVHRTL 623
HFTSP+RRYPDL++HR +
Sbjct: 572 HFTSPIRRYPDLLLHRAI 589
>POMBASE|SPBC609.01 [details] [associations]
symbol:SPBC609.01 "ribonuclease II (RNB) family"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPBC609.01
GO:GO:0005829 EMBL:CU329671 GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 PROSITE:PS01175 OrthoDB:EOG4MGWGN PIR:T40572
RefSeq:NP_596311.1 ProteinModelPortal:O94525
EnsemblFungi:SPBC609.01.1 GeneID:2540838 KEGG:spo:SPBC609.01
OMA:LHEVATH NextBio:20801955 Uniprot:O94525
Length = 1157
Score = 242 (90.2 bits), Expect = 5.4e-25, Sum P(3) = 5.4e-25
Identities = 89/301 (29%), Positives = 143/301 (47%)
Query: 108 ISSYPTKRP--TGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDR 165
+S P P G VV+++ R P + G L + + + ++ ++N S+ S
Sbjct: 437 VSLTPDSAPKYAGHVVAVLNR-PSGETCSGTLALYRPNSLALKNQSSHRRNSSTSSGETG 495
Query: 166 EYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHV 225
+ ++ P K + L+ D + + + ++ A I W S P +
Sbjct: 496 KGPKIVWFKPS-DKRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLHPFGTL 554
Query: 226 LHVFGRGGEVEPQINAILYENAICCSGFSPESLS-CLPCVPWEVPQEELLSRKDLRNFCI 284
G G+ + + AIL++ + C + PESLS C+ +P +P EEL R +LR+
Sbjct: 555 YESIGTIGDPKVEYKAILHDFS-CHTYDFPESLSHCVKRLPTPIPAEELQKRYNLRDKLT 613
Query: 285 FTIDPSTATDLDDALSIERLS-DGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
F I D AL I+ S DG+ +G+H+ADV+Y+V LD EA R + V +LQ
Sbjct: 614 FMIGTR-----DYALHIDTGSIDGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQ 668
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLN-SAGDVVDRWIGRTVIRSCCKLSYEHA 402
+P LP +SEE+ SL G D L SI L+ +G V+ +G +VI +S E A
Sbjct: 669 GSVPFLPKKVSEEI-SLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESA 727
Query: 403 Q 403
Q
Sbjct: 728 Q 728
Score = 119 (46.9 bits), Expect = 5.4e-25, Sum P(3) = 5.4e-25
Identities = 51/194 (26%), Positives = 79/194 (40%)
Query: 458 LRLENSKPVFLFDEYGTPY-DSVLSGREDLNF-LFEEFMLLA---------NKTAAEVIA 506
LRL+ K + L Y + D + +++N +FE F + N+ A +
Sbjct: 750 LRLKTDKKLDLQSLYCFEFCDGQIPNIQNINMSIFEAFPIACSLQQIEHWVNEKVASHLM 809
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLF 566
FP +LR++ P+ A G+ L SS+ + E A K K +L
Sbjct: 810 SVFPSKVILRKNQRPS--DFASLVAVSELTGVNLSASSTPSEIMT-EIATTKDKRTKMLL 866
Query: 567 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 626
+ + R M S + G + D H+ + P YTHF P RRY D+ V R L A
Sbjct: 867 QLTL----RRMCNESEYTIGT-SNAKDVSHFVFSCPYYTHFCHPTRRYIDICVQRQLREA 921
Query: 627 LEAEKLYWKHRRML 640
+ + K R L
Sbjct: 922 FDGRPDFSKDYRSL 935
Score = 64 (27.6 bits), Expect = 5.4e-25, Sum P(3) = 5.4e-25
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 688 LVNVATHCNDRKLACRNVKDACVKLYMWILLK----KKEVLLSEARVLALGPRFMTIYIE 743
L+++ CN RN ++ + Y+ LL + ++ +A VLA+ ++ I I
Sbjct: 935 LLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLRSGLVKHKAFVLAVDQEYIDIVIY 994
Query: 744 KLAIERRIYYD 754
+ +ERRI D
Sbjct: 995 EFGLERRISLD 1005
>TIGR_CMR|CPS_4617 [details] [associations]
symbol:CPS_4617 "ribonuclease R" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008997 "ribonuclease R activity"
evidence=ISS] [GO:0016075 "rRNA catabolic process" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_271264.1 ProteinModelPortal:Q47VA8 STRING:Q47VA8
GeneID:3520956 KEGG:cps:CPS_4617 PATRIC:21472057
BioCyc:CPSY167879:GI48-4626-MONOMER Uniprot:Q47VA8
Length = 826
Score = 319 (117.4 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 95/279 (34%), Positives = 133/279 (47%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EV + L RKDLR+ + TID A D DDA+ E G R+ V IADVSY+V GT
Sbjct: 259 EVEESSKLPRKDLRDLPLVTIDGDDARDFDDAVYCEPKKSGGWRLWVAIADVSYYVQHGT 318
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
ALD EA R SVY + IPMLP LS + SLNP VDRL +++ G +
Sbjct: 319 ALDDEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCEMTISATGKLSGSKF 378
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+RS + +Y I+DG E Q E+ +V +K+L +
Sbjct: 379 YPAVMRSHARFTYTKVAAILDGD----------EALCQ-----EYQTLVPDLKNLEHMYH 423
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 506
L D R GA+ E + +F+F+E R D + + EE M++AN A+ I
Sbjct: 424 ALTDARLKRGAIAFETQESIFIFNEDKKIASVEALIRNDAHKIIEECMIMANVATAKFIE 483
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSS 545
+ L R H P+ K R F + ++ GL L + +
Sbjct: 484 K-HEKPGLFRVHDKPSEDKYRNFVTYLNELGLSLPSKEA 521
Score = 237 (88.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 65/202 (32%), Positives = 100/202 (49%)
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFL 489
E+ +V +K+L + L D R GA+ E + +F+F+E R D + +
Sbjct: 407 EYQTLVPDLKNLEHMYHALTDARLKRGAIAFETQESIFIFNEDKKIASVEALIRNDAHKI 466
Query: 490 FEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFH 549
EE M++AN A+ I + L R H P+ K R F + ++ GL L + + +
Sbjct: 467 IEECMIMANVATAKFIEK-HEKPGLFRVHDKPSEDKYRNFVTYLNELGLSLPSKEAPEPR 525
Query: 550 QSLE-QAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 608
+ A+ + D L ++ R M+ A Y + D + GH+ LA P Y+HFT
Sbjct: 526 DYGDILAKVAGRPDQELIQTML---LRSMRQAVY------QSDNE-GHFGLALPSYSHFT 575
Query: 609 SPLRRYPDLVVHRTLNAALEAE 630
SP+RRYPDLVVHR + A LE E
Sbjct: 576 SPIRRYPDLVVHRVIKAILEKE 597
>UNIPROTKB|Q5HVE0 [details] [associations]
symbol:CJE0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 189 (71.6 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 58/171 (33%), Positives = 87/171 (50%)
Query: 275 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 334
+R DLR TIDP A D DDA+ + + V IADVS +V +A+D EA+
Sbjct: 214 NRMDLRALPFCTIDPIHAKDFDDAIYFDTQK---REIYVAIADVSEYVYAYSAIDKEARN 270
Query: 335 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSC 394
R S+Y IPMLP LSE + SL P +DRLA+ L+ V+ + +I S
Sbjct: 271 RGFSIYFPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSK 330
Query: 395 CKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRS--IKSLYE 443
+ +Y+ +I+ K D++ + W LY FE + +R +K+ +E
Sbjct: 331 RRFNYDEVDEILVQKPDLKELS-----W--LYELFEITKNLRKMRLKNAFE 374
Score = 155 (59.6 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 56/194 (28%), Positives = 91/194 (46%)
Query: 441 LYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKT 500
L+E++K L+ R + A + DE + +V + L E+ MLLANK
Sbjct: 357 LFEITKNLRKMRLKN-AFEFRTEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKA 415
Query: 501 AAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLK 560
AA++I D + R H + + RK+ + + G+ ++ F +L E ++
Sbjct: 416 AAKLI-----DIGVFRNHLSADTRKIDKLLNELRELGIDVN------FKPNLP---ELIR 461
Query: 561 DDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVH 620
D L D L A + ++ + GH+ L F Y+HFTSP+RRY DL++H
Sbjct: 462 DIQALADELNLRAEVDKLIIKAQKKAEYSS-VNAGHFGLGFDKYSHFTSPIRRYSDLILH 520
Query: 621 RTLNAALEA-EKLY 633
R L A + EKL+
Sbjct: 521 RLLKAKQKNDEKLF 534
Score = 39 (18.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 97 GMNAIERLSAMISSYPTKRPTGRVVSIIERS 127
G N + ++ + KRP+ +V+ +++R+
Sbjct: 82 GANYKDIVAVKLLPLKKKRPSAKVILVLKRA 112
>TIGR_CMR|CJE_0734 [details] [associations]
symbol:CJE_0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 189 (71.6 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 58/171 (33%), Positives = 87/171 (50%)
Query: 275 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 334
+R DLR TIDP A D DDA+ + + V IADVS +V +A+D EA+
Sbjct: 214 NRMDLRALPFCTIDPIHAKDFDDAIYFDTQK---REIYVAIADVSEYVYAYSAIDKEARN 270
Query: 335 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSC 394
R S+Y IPMLP LSE + SL P +DRLA+ L+ V+ + +I S
Sbjct: 271 RGFSIYFPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSK 330
Query: 395 CKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRS--IKSLYE 443
+ +Y+ +I+ K D++ + W LY FE + +R +K+ +E
Sbjct: 331 RRFNYDEVDEILVQKPDLKELS-----W--LYELFEITKNLRKMRLKNAFE 374
Score = 155 (59.6 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 56/194 (28%), Positives = 91/194 (46%)
Query: 441 LYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKT 500
L+E++K L+ R + A + DE + +V + L E+ MLLANK
Sbjct: 357 LFEITKNLRKMRLKN-AFEFRTEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKA 415
Query: 501 AAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLK 560
AA++I D + R H + + RK+ + + G+ ++ F +L E ++
Sbjct: 416 AAKLI-----DIGVFRNHLSADTRKIDKLLNELRELGIDVN------FKPNLP---ELIR 461
Query: 561 DDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVH 620
D L D L A + ++ + GH+ L F Y+HFTSP+RRY DL++H
Sbjct: 462 DIQALADELNLRAEVDKLIIKAQKKAEYSS-VNAGHFGLGFDKYSHFTSPIRRYSDLILH 520
Query: 621 RTLNAALEA-EKLY 633
R L A + EKL+
Sbjct: 521 RLLKAKQKNDEKLF 534
Score = 39 (18.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 97 GMNAIERLSAMISSYPTKRPTGRVVSIIERS 127
G N + ++ + KRP+ +V+ +++R+
Sbjct: 82 GANYKDIVAVKLLPLKKKRPSAKVILVLKRA 112
>TIGR_CMR|SPO_3330 [details] [associations]
symbol:SPO_3330 "ribonuclease R" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003723 GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967 SMART:SM00316
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 TIGRFAMs:TIGR00358
KO:K12573 TIGRFAMs:TIGR02063 RefSeq:YP_168526.1
ProteinModelPortal:Q5LN82 GeneID:3193934 KEGG:sil:SPO3330
PATRIC:23380111 HOGENOM:HOG000071121 OMA:NLRRYAH
ProtClustDB:CLSK934129 Uniprot:Q5LN82
Length = 752
Score = 278 (102.9 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 90/266 (33%), Positives = 131/266 (49%)
Query: 269 PQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSD----GISRVGVHIADVSYFVLP 324
PQ L R+DLR+ + TIDPS A D DDA D G + V IADV+ +V
Sbjct: 243 PQG-LSGRQDLRDMALVTIDPSDARDHDDACFAHADDDPKNPGGHVIWVAIADVAAYVRA 301
Query: 325 GTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 384
G+ALD EA+ R S Y R +PMLP LS ++ SL+ GV R ++ +++ G+ +
Sbjct: 302 GSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQIDAQGNKIGH 361
Query: 385 WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEV 444
R ++RS L+Y+ QD IDG + ++ L E LY ++ D R + ++
Sbjct: 362 RFVRGMMRSVASLNYQEVQDAIDGSPNDKTGPLLDEVLTPLYAAYKALDAERDRRQPLDL 421
Query: 445 SKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAE- 503
L ++R + L D+ G R D + L EEFM+LAN AAE
Sbjct: 422 D--LPERR-------------IVLNDK-GHVESVAFRDRLDAHKLIEEFMILANVAAAET 465
Query: 504 VIARAFPDSALLRRHPAPN-MRKLRE 528
+IA+ P + PAP + LRE
Sbjct: 466 LIAKRVPLLFRVHEEPAPEKLEALRE 491
Score = 176 (67.0 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 62/185 (33%), Positives = 82/185 (44%)
Query: 441 LYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKT 500
LY K L +R L L+ + + ++ G R D + L EEFM+LAN
Sbjct: 402 LYAAYKALDAERDRRQPLDLDLPERRIVLNDKGHVESVAFRDRLDAHKLIEEFMILANVA 461
Query: 501 AAE-VIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKL 559
AAE +IA+ P L R H P KL GL L + GQ Q+ L
Sbjct: 462 AAETLIAKRVP--LLFRVHEEPAPEKLEALRETAQASGLTL---AKGQVLQT-RHLNALL 515
Query: 560 KDDYVLFDI-LINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 618
+ LIN +T +Y+ +F GH+ LA Y HFTSP+RRY DL+
Sbjct: 516 HQAAGTDEAELINISTLRSMAQAYYNPENF------GHFGLALKNYAHFTSPIRRYSDLI 569
Query: 619 VHRTL 623
VHR L
Sbjct: 570 VHRGL 574
>CGD|CAL0003016 [details] [associations]
symbol:SSD1 species:5476 "Candida albicans" [GO:0020012
"evasion or tolerance of host immune response" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005935 "cellular bud neck"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0032153 "cell division site" evidence=IEA]
[GO:0060237 "regulation of fungal-type cell wall organization"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IEA] [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0003016
GO:GO:0009405 GO:GO:0003723 GO:GO:0004540 EMBL:AACQ01000012
GO:GO:0020012 RefSeq:XP_721868.1 ProteinModelPortal:Q5AK62
STRING:Q5AK62 GeneID:3636520 KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 275 (101.9 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 108/456 (23%), Positives = 211/456 (46%)
Query: 118 GRVVSIIERSPRR--DGIVGFLNVNQWFNYKGGSRKDAKKNR-SSLSVPDR-EYIQLTPT 173
G VV++++R P + G +G L Q + +D K + S++ P + + PT
Sbjct: 512 GHVVAVVDRIPGQLFAGTLGLLRPAQ----AAQAARDKKNGKESTVQNPKAPKIVWFKPT 567
Query: 174 HPKYPKMVVLVKDLP-DSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRG 232
K P + + + P D ++ + D L A I W S P ++ G
Sbjct: 568 DKKVPLIAIPTEQAPKDFVENHEKYAD-----RLFVASIKRWPITSLHPFGTLVSNLGPI 622
Query: 233 GEVEPQINAILYENAICCSGFSPESLSCLPCV-----PWEVPQEELLSRKDLRNFCIFTI 287
E +I++IL +N C + + + V P P+ E R++ N I
Sbjct: 623 DSPETEIDSILRDNNFLCDEYPDDDNDDIVSVNAYDLPSIEPEFENTQREEYLNDYIIAF 682
Query: 288 DPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIP 347
+ +D AL ++R+S+ +G H+AD++YF+ PG++LD +++ RS+SV++ Q+ +
Sbjct: 683 TQN-GEFVDHALHVKRISNTKIELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVN 741
Query: 348 MLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDII 406
+ P +++ V S LA S+ ++++++ +V D +I +VI ++Y+ I+
Sbjct: 742 LFPKQVNKIV-SFKENEKNLAVSVVFEIDTSNFEVEDLYIHESVIVPKQLVTYDAFDTIL 800
Query: 407 DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLE-NSKP 465
G+ V+S ++ SD V++ SL ++K + R ++ +L + N
Sbjct: 801 SGQ-SVDSISSAT------------SDYVKTF-SL--IAKEFRRHRLSNRSLGITPNLTL 844
Query: 466 VFLFDEYGTPYDSVLSGREDLNF-LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMR 524
+ D+ D + ++ L F + E N A + D A+LRRHP P ++
Sbjct: 845 LDQLDDEKVRLDLNIF-KDSLAFDVISEISHKVNSAIAAKVHAGLGDQAILRRHPLPTLQ 903
Query: 525 KLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLK 560
K+ F + G ++DT++S S+ + + +K
Sbjct: 904 KMETFVRKATSLGFKIDTTTSSTLQNSILKIDDPVK 939
Score = 217 (81.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 52/150 (34%), Positives = 79/150 (52%)
Query: 483 REDLNF-LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLD 541
++ L F + E N A + D A+LRRHP P ++K+ F + G ++D
Sbjct: 861 KDSLAFDVISEISHKVNSAIAAKVHAGLGDQAILRRHPLPTLQKMETFVRKATSLGFKID 920
Query: 542 TSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTD-WGHYALA 600
T++S S+ + + +K V + L+ Y + M Y+ +G K DTD + HY
Sbjct: 921 TTTSSTLQNSILKIDDPVKRKCV--ETLL-Y--KCMSRGRYYVAG--KQDTDSYAHYYFN 973
Query: 601 FPVYTHFTSPLRRYPDLVVHRTLNAALEAE 630
P+YTHFT+PLRRY DL+VHR L A L +
Sbjct: 974 LPLYTHFTAPLRRYADLIVHRQLKAVLNKQ 1003
Score = 53 (23.7 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 686 DILVNVATHCNDRKLACRNVKDACVKLYMWILLKK-KEV---LLSEARVLALGPRFMTIY 741
D L + +CN +K N ++ + L + + + E LL V+ + ++
Sbjct: 1010 DSLKAITDYCNFKKDCAANAQEQAIHLLLSQTINEMSETAGQLLCMGTVVQVYESSFDVF 1069
Query: 742 IEKLAIERRIYYDEV 756
I + +E+R++ D++
Sbjct: 1070 IPEFGVEKRVHGDQL 1084
>UNIPROTKB|Q5AK62 [details] [associations]
symbol:SSD1 "Putative uncharacterized protein SSD1"
species:237561 "Candida albicans SC5314" [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0020012 "evasion or tolerance of host immune
response" evidence=IMP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 CGD:CAL0003016 GO:GO:0009405 GO:GO:0003723
GO:GO:0004540 EMBL:AACQ01000012 GO:GO:0020012 RefSeq:XP_721868.1
ProteinModelPortal:Q5AK62 STRING:Q5AK62 GeneID:3636520
KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 275 (101.9 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 108/456 (23%), Positives = 211/456 (46%)
Query: 118 GRVVSIIERSPRR--DGIVGFLNVNQWFNYKGGSRKDAKKNR-SSLSVPDR-EYIQLTPT 173
G VV++++R P + G +G L Q + +D K + S++ P + + PT
Sbjct: 512 GHVVAVVDRIPGQLFAGTLGLLRPAQ----AAQAARDKKNGKESTVQNPKAPKIVWFKPT 567
Query: 174 HPKYPKMVVLVKDLP-DSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRG 232
K P + + + P D ++ + D L A I W S P ++ G
Sbjct: 568 DKKVPLIAIPTEQAPKDFVENHEKYAD-----RLFVASIKRWPITSLHPFGTLVSNLGPI 622
Query: 233 GEVEPQINAILYENAICCSGFSPESLSCLPCV-----PWEVPQEELLSRKDLRNFCIFTI 287
E +I++IL +N C + + + V P P+ E R++ N I
Sbjct: 623 DSPETEIDSILRDNNFLCDEYPDDDNDDIVSVNAYDLPSIEPEFENTQREEYLNDYIIAF 682
Query: 288 DPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIP 347
+ +D AL ++R+S+ +G H+AD++YF+ PG++LD +++ RS+SV++ Q+ +
Sbjct: 683 TQN-GEFVDHALHVKRISNTKIELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVN 741
Query: 348 MLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDII 406
+ P +++ V S LA S+ ++++++ +V D +I +VI ++Y+ I+
Sbjct: 742 LFPKQVNKIV-SFKENEKNLAVSVVFEIDTSNFEVEDLYIHESVIVPKQLVTYDAFDTIL 800
Query: 407 DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLE-NSKP 465
G+ V+S ++ SD V++ SL ++K + R ++ +L + N
Sbjct: 801 SGQ-SVDSISSAT------------SDYVKTF-SL--IAKEFRRHRLSNRSLGITPNLTL 844
Query: 466 VFLFDEYGTPYDSVLSGREDLNF-LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMR 524
+ D+ D + ++ L F + E N A + D A+LRRHP P ++
Sbjct: 845 LDQLDDEKVRLDLNIF-KDSLAFDVISEISHKVNSAIAAKVHAGLGDQAILRRHPLPTLQ 903
Query: 525 KLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLK 560
K+ F + G ++DT++S S+ + + +K
Sbjct: 904 KMETFVRKATSLGFKIDTTTSSTLQNSILKIDDPVK 939
Score = 217 (81.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 52/150 (34%), Positives = 79/150 (52%)
Query: 483 REDLNF-LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLD 541
++ L F + E N A + D A+LRRHP P ++K+ F + G ++D
Sbjct: 861 KDSLAFDVISEISHKVNSAIAAKVHAGLGDQAILRRHPLPTLQKMETFVRKATSLGFKID 920
Query: 542 TSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTD-WGHYALA 600
T++S S+ + + +K V + L+ Y + M Y+ +G K DTD + HY
Sbjct: 921 TTTSSTLQNSILKIDDPVKRKCV--ETLL-Y--KCMSRGRYYVAG--KQDTDSYAHYYFN 973
Query: 601 FPVYTHFTSPLRRYPDLVVHRTLNAALEAE 630
P+YTHFT+PLRRY DL+VHR L A L +
Sbjct: 974 LPLYTHFTAPLRRYADLIVHRQLKAVLNKQ 1003
Score = 53 (23.7 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 686 DILVNVATHCNDRKLACRNVKDACVKLYMWILLKK-KEV---LLSEARVLALGPRFMTIY 741
D L + +CN +K N ++ + L + + + E LL V+ + ++
Sbjct: 1010 DSLKAITDYCNFKKDCAANAQEQAIHLLLSQTINEMSETAGQLLCMGTVVQVYESSFDVF 1069
Query: 742 IEKLAIERRIYYDEV 756
I + +E+R++ D++
Sbjct: 1070 IPEFGVEKRVHGDQL 1084
>UNIPROTKB|I3LNA8 [details] [associations]
symbol:I3LNA8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 GO:GO:0003723 GO:GO:0004540
GeneTree:ENSGT00530000063106 EMBL:CU861482 EMBL:CU467781
Ensembl:ENSSSCT00000026675 OMA:KFHEDEL Uniprot:I3LNA8
Length = 146
Score = 242 (90.2 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 51/114 (44%), Positives = 70/114 (61%)
Query: 348 MLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIID 407
MLP LL EE+ SLNP D+L FS+ W L G ++ W GRTVIRSC KLSYEHAQ +I+
Sbjct: 1 MLPRLLCEELCSLNPMTDKLTFSVIWTLTPRGKILSEWFGRTVIRSCTKLSYEHAQSMIE 60
Query: 408 GKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLE 461
L P + + +V R++ +L+ ++K L+ +RF DGALRL+
Sbjct: 61 SPTRKIPEKEL----PPISPEHSGEEVHRAVLTLHGIAKELRKQRFADGALRLD 110
>DICTYBASE|DDB_G0285435 [details] [associations]
symbol:DDB_G0285435 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0285435 EMBL:AAFI02000079
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_638051.1
ProteinModelPortal:Q54N92 EnsemblProtists:DDB0186491 GeneID:8625097
KEGG:ddi:DDB_G0285435 InParanoid:Q54N92 OMA:RYNDISW Uniprot:Q54N92
Length = 1642
Score = 231 (86.4 bits), Expect = 3.1e-19, Sum P(5) = 3.1e-19
Identities = 59/148 (39%), Positives = 83/148 (56%)
Query: 266 WEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSD----GIS--RVGVHIADVS 319
W E R DL + TIDP ++TDLDDA+S L+D G+S +G+HI+DVS
Sbjct: 974 WLPSDREEERRVDLTHLVPVTIDPPSSTDLDDAISFRCLTDEFDEGMSVFEIGIHISDVS 1033
Query: 320 YFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG 379
F+ G+ LD EA+ R ++Y++ IPMLP LS SL R FS+ + S G
Sbjct: 1034 AFLEKGSKLDKEAEYRLNTIYLIGSIIPMLPKNLSSSTCSLKLYQKRFCFSLLVKIRSDG 1093
Query: 380 DVVDRWIGRTVIRSCCKLSYEHAQDIID 407
++D ++ +RS LSYE AQ II+
Sbjct: 1094 KIIDYKFCKSNLRSKGHLSYEKAQRIIE 1121
Score = 88 (36.0 bits), Expect = 3.1e-19, Sum P(5) = 3.1e-19
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 604 YTHFTSPLRRYPDLVVHRTLNAALEAEKLYW 634
YTHFT+P+RRY D+ +HR L+ L E + W
Sbjct: 1464 YTHFTAPIRRYMDVNIHRALSLQLTKE-VVW 1493
Score = 54 (24.1 bits), Expect = 3.1e-19, Sum P(5) = 3.1e-19
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 679 KYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFM 738
K +P D L + ND R + + LY+ + +K +L+ V+ + + +
Sbjct: 1514 KKSLPTGDDLTQLCQRYNDISWK-RKISEKLNLLYLATYIWEKGPILTPGIVVTMSTKHL 1572
Query: 739 TIYIEKLAIE 748
IY+ + +E
Sbjct: 1573 VIYLSEYNLE 1582
Score = 49 (22.3 bits), Expect = 3.1e-19, Sum P(5) = 3.1e-19
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 434 VVRSIKSLYEVSKILKDKRFTDGAL-RLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEE 492
V S+ LY +S +L + R + + N+ L E G P + + + L +E
Sbjct: 1204 VNHSVWGLYLISSLLNNYRKERREIFDISNNIQYDLSVE-GVPISVDFLPKLESHVLVQE 1262
Query: 493 FMLLANKTAA 502
FM LAN AA
Sbjct: 1263 FMHLANNLAA 1272
Score = 41 (19.5 bits), Expect = 3.1e-19, Sum P(5) = 3.1e-19
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 137 LNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQ 169
+N+N N + K+ K N+S P ++ Q
Sbjct: 139 ININSNLNGNTNTNKNKKLNKSQFIQPPQQQQQ 171
Score = 37 (18.1 bits), Expect = 6.0e-13, Sum P(4) = 6.0e-13
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 606 HFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPK 642
H +SP+ ++ + + L+ L E ++PK
Sbjct: 1596 HHSSPIDDDEEIEISKQLSVFLSVEPFVLFRSNLVPK 1632
>UNIPROTKB|Q9BYK8 [details] [associations]
symbol:HELZ2 "Helicase with zinc finger domain 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 PROSITE:PS50157
SMART:SM00355 SMART:SM00382 SMART:SM00955 GO:GO:0005524
Reactome:REACT_111045 GO:GO:0005654 GO:GO:0044281 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0044255
GO:GO:0006351 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
GO:GO:0030374 eggNOG:COG0557 InterPro:IPR022966 EMBL:AL121829
EMBL:AF517673 EMBL:AB201715 EMBL:AB051556 EMBL:AK074171
EMBL:AK055611 IPI:IPI00249304 IPI:IPI00249305 IPI:IPI00736631
RefSeq:NP_001032412.2 RefSeq:NP_208384.3 UniGene:Hs.517180
ProteinModelPortal:Q9BYK8 IntAct:Q9BYK8 STRING:Q9BYK8
PhosphoSite:Q9BYK8 DMDM:209572784 PaxDb:Q9BYK8 PRIDE:Q9BYK8
GeneID:85441 KEGG:hsa:85441 UCSC:uc002yfl.1 UCSC:uc002yfm.2
CTD:85441 GeneCards:GC20M062189 HGNC:HGNC:30021 HPA:HPA051267
MIM:611265 neXtProt:NX_Q9BYK8 HOGENOM:HOG000231856
HOVERGEN:HBG080465 InParanoid:Q9BYK8 OMA:FRAAHIM PhylomeDB:Q9BYK8
GenomeRNAi:85441 NextBio:76020 ArrayExpress:Q9BYK8 Bgee:Q9BYK8
Genevestigator:Q9BYK8 GermOnline:ENSG00000130589
PANTHER:PTHR10887:SF16 Uniprot:Q9BYK8
Length = 2649
Score = 229 (85.7 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 56/133 (42%), Positives = 79/133 (59%)
Query: 276 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 335
R+D R F FT+DP A +LDDALS+ L V VHI DV+ FV LD+EA+ +
Sbjct: 1334 REDCRAFLTFTVDPQGACNLDDALSVRDLGPRCE-VAVHITDVASFVPRDGVLDVEARRQ 1392
Query: 336 STSVYMLQRK-IPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSA-GDVVDRWIGRTVIRS 393
+ Y R+ +PMLP L ++V SL PG DRLA S+F + A G + +V++S
Sbjct: 1393 GAAFYAPGREPVPMLPASLCQDVLSLLPGRDRLAISLFLTMEKASGQLKSLRFAPSVVQS 1452
Query: 394 CCKLSYEHAQDII 406
+LSYE A+++I
Sbjct: 1453 DRQLSYEEAEEVI 1465
Score = 82 (33.9 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 595 GHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
GHY+L YT TSP+RRY D+V+ R + AL
Sbjct: 1659 GHYSLQVDWYTWATSPIRRYLDVVLQRQILLAL 1691
Score = 66 (28.3 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 472 YGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSAL--LRRHPAPNMRKLREF 529
Y P + G + + +E+M+ N+ AE + + + LR PAP ++L+
Sbjct: 1507 YEQPDEDGTLGFRAAHIMVKEYMIQFNRLVAEFLVGSECTRTVTPLRWQPAPRSQQLK-- 1564
Query: 530 EAFCSKHG 537
A C KHG
Sbjct: 1565 -ALCEKHG 1571
>POMBASE|SPCC16C4.09 [details] [associations]
symbol:sts5 "RNB-like protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=ISM] [GO:0032153 "cell division site"
evidence=IDA] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPCC16C4.09
GO:GO:0005829 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0032153 GO:GO:0003723 GO:GO:0006401 GO:GO:0007049
GO:GO:0004527 GO:GO:0004540 eggNOG:COG0557 PROSITE:PS01175
OrthoDB:EOG4MGWGN EMBL:D58421 PIR:T41099 PIR:T45283
RefSeq:NP_587919.1 ProteinModelPortal:O74454 STRING:O74454
EnsemblFungi:SPCC16C4.09.1 GeneID:2539180 KEGG:spo:SPCC16C4.09
OMA:HESNINS NextBio:20800351 GO:GO:2000115 Uniprot:O74454
Length = 1066
Score = 175 (66.7 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 43/121 (35%), Positives = 65/121 (53%)
Query: 287 IDPSTATD-LDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRK 345
I+ S+ATD + A I S G VG+H+ DVS + PG+ LD E Q RS +V + Q+
Sbjct: 619 INSSSATDFVSSAFHIRPTSTGY-HVGIHVTDVSRVIEPGSPLDRELQRRSIAVNLCQKS 677
Query: 346 IPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDI 405
+P+ P L E + SL D S+ D++S G + WIG VIR + + A ++
Sbjct: 678 VPLFPTTLGEAL-SLREDKDCYTMSLLLDVSSTGKIRGTWIGWAVIRPRKAYTMKEADEL 736
Query: 406 I 406
+
Sbjct: 737 L 737
Score = 116 (45.9 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 48/162 (29%), Positives = 72/162 (44%)
Query: 489 LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQF 548
L E + AN+ A + + F ++A LR P+ R ++ + G LD SS+
Sbjct: 797 LRETLLDAANRAVASHLRQEFRENAFLRTQRLPSRENCRILQSMAIQMGCVLDLSST--- 853
Query: 549 HQSLEQAREKLKDDYVLFDILINY------ATRPMQ-----LASYFCSGDFKDDTDWGHY 597
+SL ++ ++DD V + + Y A MQ LAS S +D++D
Sbjct: 854 -KSLLRSLSLIEDDTVRNILQLYYYKVTPRAVYEMQKYKGNLASQMMSLGIEDESD---- 908
Query: 598 ALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRM 639
THFT+PL RY D+VVH L L E K R+
Sbjct: 909 -----DLTHFTAPLERYGDIVVHYQLQLLLRGELASEKRLRV 945
Score = 74 (31.1 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 27/134 (20%), Positives = 54/134 (40%)
Query: 118 GRVVSIIERSPRR--DGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDR-EYIQLTPTH 174
G VV++++R+P + G +G L + N K + S+ S D+ + + P+
Sbjct: 430 GHVVAVLQRAPGQVFSGTLGILRPSSAAN-KERQTSSGNQGSSNNSGNDKPKIVWFKPSD 488
Query: 175 PKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGE 234
+ P + + + P D L A I W S P ++ G
Sbjct: 489 KRVPLIAIPTEQAPTDFLGN----DQAYAQRLFLASIKRWPVTSLHPFGMLVGELGSMDS 544
Query: 235 VEPQINAILYENAI 248
+ Q++A+L++ +
Sbjct: 545 MSAQVSALLHDTGV 558
Score = 42 (19.8 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 730 VLALGPRFMTIYIEKLAIERRIYYD 754
V + P + ++ L +E+R++ D
Sbjct: 987 VCFVAPSYFDVFFPSLGMEKRVHLD 1011
Score = 42 (19.8 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 261 LPCVPWEVPQEELLSRKD 278
+ VP+EVPQ + +D
Sbjct: 386 IDAVPFEVPQRSAIKARD 403
>RGD|1306056 [details] [associations]
symbol:Pric285 "peroxisomal proliferator-activated receptor A
interacting complex 285" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 RGD:1306056 GO:GO:0005524
GO:GO:0003723 GO:GO:0004386 GO:GO:0004540 PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 IPI:IPI00567928 RefSeq:XP_001057758.2
RefSeq:XP_230961.5 UniGene:Rn.47450 ProteinModelPortal:D4ADC2
Ensembl:ENSRNOT00000017787 GeneID:296474 KEGG:rno:296474
UCSC:RGD:1306056 CTD:296474 OrthoDB:EOG4Q84WM NextBio:641262
ArrayExpress:D4ADC2 Uniprot:D4ADC2
Length = 2944
Score = 246 (91.7 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 72/201 (35%), Positives = 103/201 (51%)
Query: 210 RIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLS-CLPCVPWEV 268
RI W E +P VL V + E ++ + E+ + P S+S L E+
Sbjct: 1499 RIVLWRERFYYPLGIVLEVLPKAVTWEQGLHILDLEHGLKAHTPDPASVSKALQKYHSEI 1558
Query: 269 PQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTAL 328
R+D R F FT+DP A +LDDALS+ L + V VHIADV+ V AL
Sbjct: 1559 DMAAS-HREDYRRFLTFTVDPQGACNLDDALSVRDLGP-VYEVAVHIADVASLVPKDGAL 1616
Query: 329 DIEAQVRSTSVYMLQRK-IPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI- 386
D+EA+ + T Y R+ + MLP L +E SL PG DRLA S+F + G R +
Sbjct: 1617 DVEARQQGTVFYAPSREPVLMLPASLCQEALSLLPGQDRLAISLFLTMEKGGGGQIRSLR 1676
Query: 387 -GRTVIRSCCKLSYEHAQDII 406
+++RS +LSYE A+++I
Sbjct: 1677 FAPSIVRSDRQLSYEEAEELI 1697
Score = 79 (32.9 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 595 GHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR 637
GHY+L YT +SP+RRY D+V+ R + AL + + +R
Sbjct: 1889 GHYSLQVDWYTWASSPIRRYLDVVLQRLILLALGHKSSTYSNR 1931
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 477 DSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSAL--LRRHPAPNMRKLREFEAFCS 534
DSVL G + + +E+M+ N AE + L LR P P+ ++L ++
Sbjct: 1745 DSVL-GFRTAHIMVQEYMIQFNSRVAEFLVGDKHTQTLTPLRWQPTPSRQQL---DSVFK 1800
Query: 535 KH-GL 538
KH GL
Sbjct: 1801 KHRGL 1805
Score = 42 (19.8 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 433 DVVR-SIKSLYEV-SKILKDKRFTDGALRLENSKPVFLFDEYGTP 475
+V+R S + EV SK L D R + L+N+ P+ + G P
Sbjct: 2316 EVLRPSTRFTVEVLSKQLPDLRKEEAVRGLKNASPLVISIALGLP 2360
>UNIPROTKB|E2RBM4 [details] [associations]
symbol:PRIC285 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AAEX03014158 Ensembl:ENSCAFT00000020582 OMA:RCQYAHS
Uniprot:E2RBM4
Length = 2919
Score = 219 (82.2 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 67/200 (33%), Positives = 96/200 (48%)
Query: 210 RIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVP 269
RI W + +P VL V E + + E+ + P +L C +
Sbjct: 1503 RIVLWRQRFYYPLGIVLEVLPEATTWEQGLRVLDLEHGLKKPSLEPAAL-CKVLQKYRAE 1561
Query: 270 QEELLS-RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTAL 328
R+D R F FT+DP A LDDALS+ L +V VHIADV+ + A+
Sbjct: 1562 LGRAPDHREDCRGFPTFTVDPQGAQYLDDALSVRDLGPRY-QVAVHIADVASSLPRDGAV 1620
Query: 329 DIEAQVRSTSVYMLQRK-IPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW-I 386
D+EA+ + + Y R+ +PMLP L +V SL PG DRLA S+F + D +
Sbjct: 1621 DLEARRQGITFYAPDREPVPMLPASLCRDVLSLLPGQDRLAISLFLTVEKGSDQIKSLHF 1680
Query: 387 GRTVIRSCCKLSYEHAQDII 406
+VI S +LSYE A+ +I
Sbjct: 1681 APSVICSDRQLSYEEAEAVI 1700
Score = 84 (34.6 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 584 CSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
C G+ ++ GHY+L YT TSP+RRY D+V+ R + AL
Sbjct: 1884 CQGERQEA---GHYSLQVDWYTWATSPIRRYLDVVLQRQILLAL 1924
Score = 71 (30.1 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 472 YGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSAL--LRRHPAPNMRKLREF 529
Y P + + G + + +E+M+ N AE++ + P + LR P P R+L
Sbjct: 1742 YEQPSEDCVLGFRAAHVMIKEYMIQFNSLVAELLVSSEPTRTVTPLRWQPTPGERQLG-- 1799
Query: 530 EAFCSKH 536
A C KH
Sbjct: 1800 -ALCDKH 1805
>UNIPROTKB|F1RMM8 [details] [associations]
symbol:LOC100519780 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045944 "positive regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
OMA:FRAAHIM PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:FP102633 Ensembl:ENSSSCT00000003670 Uniprot:F1RMM8
Length = 2879
Score = 252 (93.8 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 81/252 (32%), Positives = 124/252 (49%)
Query: 210 RIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVP 269
R+ W E +P +L V E + + E + G SP+ S + ++
Sbjct: 1454 RVILWRERFYYPLGVILKVLPEATTWEQGLRILRLEYGL--KGASPDPASVYKAL--QMY 1509
Query: 270 QEELLS----RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPG 325
Q+EL R+D R+F FT+DP A DLDDALS+ L + V VHIADV+ V
Sbjct: 1510 QKELSRVPGCREDCRSFPTFTVDPQGAFDLDDALSVRDLGS-MYEVAVHIADVASCVPRD 1568
Query: 326 TALDIEAQVRSTSVYML-QRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 384
ALD+EA+ R +++Y Q + MLP +LS++ SL PG DRL S+F + +
Sbjct: 1569 GALDLEARRRGSTLYAPGQEPVHMLPAVLSQDAFSLLPGRDRLTISLFLTEKGSDQLKSL 1628
Query: 385 WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEV 444
+VIRS ++SYE A+ +I S G +L + + D + + Y
Sbjct: 1629 RFAPSVIRSDRQMSYEEAEQVI------RSHPRAG---CELPARLDSLDAC--VAAAYHF 1677
Query: 445 SKILKDKRFTDG 456
S++L+ +R DG
Sbjct: 1678 SRVLRRRRLHDG 1689
Score = 77 (32.2 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNH--REGVRGR 652
H+AL YT TSP+RRY D+V+ R + AL + H ++ ++ R+ VR R
Sbjct: 1846 HFALEAEWYTWATSPIRRYVDVVLQRQILRALGLGGSAYSHGDVIRLCHYFTRQHVRSR 1904
Score = 43 (20.2 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQW 142
P G V+S+++R+P + +V ++W
Sbjct: 1373 PLGSVLSVLQRAPCK--LVFVCRADEW 1397
>TIGR_CMR|SO_3935 [details] [associations]
symbol:SO_3935 "ribonuclease R" species:211586 "Shewanella
oneidensis MR-1" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD InterPro:IPR013668
Pfam:PF08461 TIGRFAMs:TIGR02063 RefSeq:NP_719466.1
ProteinModelPortal:Q8EAG7 GeneID:1171573 KEGG:son:SO_3935
PATRIC:23527548 ProtClustDB:CLSK907414 Uniprot:Q8EAG7
Length = 808
Score = 250 (93.1 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 77/244 (31%), Positives = 120/244 (49%)
Query: 264 VPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVL 323
+P EV + + + R DLR+ + TID A D DDA+ E G R+ V IADVSY+V
Sbjct: 248 IPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADVSYYVR 307
Query: 324 PGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD 383
+ALD EA+ R SVY + IPMLP +S + SLNP VDRL +++ G +
Sbjct: 308 TDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISARGKLSG 367
Query: 384 RWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 443
V+ S + +Y +++G G P+ F ++ ++SLY
Sbjct: 368 YKFYPAVMHSHARFTYTQVAAMLEG----------GPIAPEHEALFVH---LQCLQSLYL 414
Query: 444 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAE 503
L ++R GA+ E + F+F++ V R + + EE M+LAN +AA+
Sbjct: 415 A---LDEQRAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAK 471
Query: 504 VIAR 507
+ +
Sbjct: 472 FVKK 475
Score = 206 (77.6 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 60/200 (30%), Positives = 99/200 (49%)
Query: 435 VRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFM 494
++ ++SLY L ++R GA+ E + F+F++ V R + + EE M
Sbjct: 406 LQCLQSLYLA---LDEQRAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECM 462
Query: 495 LLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQS 551
+LAN +AA+ + + L R H +P+ +KL F+ F ++ GL + + +
Sbjct: 463 ILANVSAAKFVKK-HKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNV 521
Query: 552 LEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPL 611
+ Q ++ D L +++ R M+ A Y D + GH+ LA Y HFTSP+
Sbjct: 522 MLQIADR--PDAELIQVML---LRSMRQAIY------TPDNE-GHFGLALEEYAHFTSPI 569
Query: 612 RRYPDLVVHRTLNAALEAEK 631
RRYPDLV+HR + L EK
Sbjct: 570 RRYPDLVLHRVIRYLLAKEK 589
>UNIPROTKB|E1C0Z0 [details] [associations]
symbol:HELZ2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR007087 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 SMART:SM00355
SMART:SM00955 GO:GO:0008270 GO:GO:0003723 GO:GO:0005622
GO:GO:0004386 GO:GO:0004540 OMA:FRAAHIM PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 EMBL:AADN02019144 IPI:IPI00594758
Ensembl:ENSGALT00000009906 Uniprot:E1C0Z0
Length = 2565
Score = 210 (79.0 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 54/137 (39%), Positives = 80/137 (58%)
Query: 269 PQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTAL 328
P +E L +D R++ FT+DP A DLDDA+S+ L +G+HIADV+ V G+A+
Sbjct: 1247 PSKENL--RDCRSYLTFTVDPQGARDLDDAVSVRDLGHQYE-IGIHIADVASIVPKGSAV 1303
Query: 329 DIEAQVRSTSVYMLQRK-IPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGD-VVDRWI 386
D+EA+ R S Y +++ + MLP +S ++ SL P DR S+F + D V D
Sbjct: 1304 DVEAKKRGVSYYAPEQEPVHMLPPRVSNDICSLLPQKDRRVISLFVIVEKKTDKVTDGNF 1363
Query: 387 GRTVIRSCCKLSYEHAQ 403
+VI S +LSYE A+
Sbjct: 1364 TLSVICSDWQLSYEEAE 1380
Score = 106 (42.4 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 581 SYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKL 632
SYFC + + GHY+L YT +SP+RRY D+VV R L++ L + +
Sbjct: 1565 SYFCRSNSTAQSKVGHYSLKVDSYTWASSPIRRYMDIVVQRHLHSVLRKKPI 1616
Score = 45 (20.9 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 115 RPTGRVVSIIERSPRRDGIV 134
RP G+VV I++R+ R +
Sbjct: 1103 RPQGKVVGILKRAERERNFI 1122
>TAIR|locus:2180172 [details] [associations]
symbol:EMB2730 "EMBRYO DEFECTIVE 2730" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0004540 "ribonuclease activity" evidence=IEA;ISS] [GO:0009793
"embryo development ending in seed dormancy" evidence=NAS]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA;IMP]
[GO:0009658 "chloroplast organization" evidence=RCA;IMP]
[GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0034660 "ncRNA metabolic
process" evidence=RCA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009658
GO:GO:0003723 GO:GO:0006364 GO:GO:0000175 eggNOG:COG0557
EMBL:AL162874 GO:GO:0008859 EMBL:BT010457 EMBL:AK176383
IPI:IPI00548385 PIR:T48246 RefSeq:NP_195845.2 UniGene:At.4904
ProteinModelPortal:Q6NQJ6 SMR:Q6NQJ6 STRING:Q6NQJ6 PaxDb:Q6NQJ6
PRIDE:Q6NQJ6 EnsemblPlants:AT5G02250.1 GeneID:830864
KEGG:ath:AT5G02250 GeneFarm:4119 TAIR:At5g02250
HOGENOM:HOG000029837 InParanoid:Q6NQJ6 OMA:RVEEAHP PhylomeDB:Q6NQJ6
ProtClustDB:CLSN2681022 Genevestigator:Q6NQJ6 Uniprot:Q6NQJ6
Length = 803
Score = 211 (79.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 49/143 (34%), Positives = 80/143 (55%)
Query: 272 ELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIE 331
+ + R DL + ++ ID A +LDDALS RL DG ++ +H+AD + +V PG+ +D E
Sbjct: 395 DAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGSKVDRE 454
Query: 332 AQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVI 391
A+ R TSV++ PM P L+ E SL G + A S+ L S G + + + ++I
Sbjct: 455 ARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEYSVDNSII 514
Query: 392 RSCCKLSYEHAQDIIDGKFDVES 414
R L+YE A +++ + E+
Sbjct: 515 RPTYMLTYESASELLHLNLEEEA 537
Score = 82 (33.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
H L P Y FTSP+RRY DL H + A L
Sbjct: 662 HGVLGIPGYVQFTSPIRRYMDLTAHYQIKAFL 693
>DICTYBASE|DDB_G0288469 [details] [associations]
symbol:DDB_G0288469 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0288469 GO:GO:0003723
EMBL:AAFI02000111 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_636708.1
ProteinModelPortal:Q54IW8 EnsemblProtists:DDB0219344 GeneID:8626640
KEGG:ddi:DDB_G0288469 InParanoid:Q54IW8 OMA:FEMERES
ProtClustDB:CLSZ2429881 Uniprot:Q54IW8
Length = 960
Score = 184 (69.8 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 57/214 (26%), Positives = 103/214 (48%)
Query: 285 FTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQR 344
F ID + D+DDA+ + +G V VHIADV+ V P + D Q +S+S+Y+ +
Sbjct: 543 FAIDSESTKDVDDAIGLIDEGNGEYSVIVHIADVTDIVKPHSDHDKWGQFKSSSIYLPHK 602
Query: 345 KIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQD 404
MLP ++ + SL+P S + +++ G+++D I +++ + K SY ++
Sbjct: 603 TYFMLPNSITNHL-SLSPNKSNKCLSFQFKVSNKGEIIDYKIFPSIVNNLIKTSYNKVEN 661
Query: 405 -IIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
++D + NT+ D ++ +K L+E+S +LK++R + R++
Sbjct: 662 SLLDSNSSNNNKNTIHS-----------IDEIKQLKKLFEISTLLKERREINKPYRIDLP 710
Query: 464 KPVFLFDEYGTPYDSVLSGRED--LNFLFEEFML 495
D G D RE+ N L EFM+
Sbjct: 711 SIKINVDNNGL-IDVCQDQRENEISNQLVSEFMI 743
Score = 104 (41.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 595 GHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAE-KLY-WKH-RRMLPKNN 644
GH++LA YT TSP+RRYPD++VH + + L+ + ++Y ++H +++P N
Sbjct: 807 GHHSLALDNYTWATSPIRRYPDIIVHSQIKSFLKNKNQVYSYQHLNKIIPTVN 859
>ZFIN|ZDB-GENE-070912-617 [details] [associations]
symbol:si:dkey-97a13.6 "si:dkey-97a13.6"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 ZFIN:ZDB-GENE-070912-617
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391 EMBL:BX663525
IPI:IPI00499390 RefSeq:XP_699251.2 UniGene:Dr.89869
Ensembl:ENSDART00000017829 GeneID:570654 KEGG:dre:570654
NextBio:20890238 Uniprot:E7F3B1
Length = 2781
Score = 199 (75.1 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 94/365 (25%), Positives = 158/365 (43%)
Query: 62 YNQEMIEREGYNYINGHH-PXXXXXXXXXXXXQQNDGMNAI-ERLSAMISSYPTKRPTGR 119
Y + + EGY +G+ P ++N GM+ + + I + TGR
Sbjct: 1047 YKRGELVMEGYQ--SGYIIPYDNPSERIDIKGRKNIGMSFPGDEVVVEIRRHDEGHLTGR 1104
Query: 120 VVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNR-SSLSVP-DREYIQLTPTHPKY 177
V+ + RSP V L ++ +N K + + +N + +P D ++ K
Sbjct: 1105 VLGLTNRSPTSSECVCSLE-DENYNRK---KLNPDQNLVPKMMIPLDHTTTKIRILVKKE 1160
Query: 178 P-KMVVLVKDLPDS--IKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGE 234
K++ L K + + I R+ + T + + +I W E FP V + G
Sbjct: 1161 ARKLIPLWKCVSGNWTITGRVPINEQTKQNYVFVVQILGWKEHCSFPLGRVTDILPVGTS 1220
Query: 235 VEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATD 294
+E + + E + SP + + + + RKD FT+DP A
Sbjct: 1221 LEEGLKILKSEFKL----MSPPLMQENTLLEIRIDDKR---RKDFTGLKTFTVDPPNAEV 1273
Query: 295 LDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIP--MLPVL 352
LDDA+SI L +GVH+ADV+ FV +++D A+ + Y K P M P
Sbjct: 1274 LDDAISINDLGS-CYEIGVHVADVASFVSKDSSIDAFAKDMGATFYA-PGKEPAFMFPKH 1331
Query: 353 LSEEVGSLNPGVDRLAFSIFWDLNS-AGDVVDRWIGRTVIRSCCKLSYEHAQDII---DG 408
LS SL PG DR A S+ ++ +G + + ++++S +L+Y A+DII DG
Sbjct: 1332 LSTTCWSLLPGKDRKAISLIVEVEKQSGVITKKTFDLSMVKSKRQLTYNEAEDIICQCDG 1391
Query: 409 --KFD 411
+FD
Sbjct: 1392 ELRFD 1396
Score = 94 (38.1 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 595 GHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
GHY+L YTH +SP+RRY D+V+ R ++A L
Sbjct: 1811 GHYSLHLDSYTHASSPIRRYIDVVLQRLMHAVL 1843
>UNIPROTKB|Q9KLE1 [details] [associations]
symbol:rnb "Exoribonuclease 2" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006401 "RNA catabolic
process" evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 179 (68.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 87/348 (25%), Positives = 148/348 (42%)
Query: 168 IQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLH 227
+ + P HP+ K+ + K + +EGD + LV + ++ F Q + H
Sbjct: 97 LNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVA-HLVRHPLK--GDDGFFVQ--ISH 151
Query: 228 -VFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFT 286
+ ++ P L EN + S P + W++ + L R+DL T
Sbjct: 152 KITDANDKIAPWW-VTLAENDLPNS--EPAGID-----DWQLKDDADLVREDLTALPFVT 203
Query: 287 IDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKI 346
ID + D+DDAL ++L +G + + IAD + ++ P +D A+ R ++Y+ R I
Sbjct: 204 IDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNI 263
Query: 347 PMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD--RWIGRTVIRSCCKLSYEHAQD 404
PMLP L++E+ SL R A + G + D R+ I+S +L Y+H D
Sbjct: 264 PMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN-IKSHARLVYDHVSD 322
Query: 405 IIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK 464
++ SS E W ++ + ++ LY S+ + R T + + +
Sbjct: 323 WLE----TGSS----EQWQPS------EEIAQVVRDLYAFSQARANWRETHAVVFPD--R 366
Query: 465 PVFLFDEYGTPYDSVL---SGREDLNFLFEEFMLLANKTAAEVIARAF 509
P + F E D V R N L EE M+ AN A + + F
Sbjct: 367 PDYRF-ELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTF 413
Score = 84 (34.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNA 625
H+A+ VY +TSP+R+Y D++ HR L A
Sbjct: 490 HFAMGLDVYATWTSPIRKYGDMINHRLLKA 519
>TIGR_CMR|VC_A0805 [details] [associations]
symbol:VC_A0805 "exoribonuclease II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 179 (68.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 87/348 (25%), Positives = 148/348 (42%)
Query: 168 IQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLH 227
+ + P HP+ K+ + K + +EGD + LV + ++ F Q + H
Sbjct: 97 LNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVA-HLVRHPLK--GDDGFFVQ--ISH 151
Query: 228 -VFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFT 286
+ ++ P L EN + S P + W++ + L R+DL T
Sbjct: 152 KITDANDKIAPWW-VTLAENDLPNS--EPAGID-----DWQLKDDADLVREDLTALPFVT 203
Query: 287 IDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKI 346
ID + D+DDAL ++L +G + + IAD + ++ P +D A+ R ++Y+ R I
Sbjct: 204 IDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNI 263
Query: 347 PMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD--RWIGRTVIRSCCKLSYEHAQD 404
PMLP L++E+ SL R A + G + D R+ I+S +L Y+H D
Sbjct: 264 PMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN-IKSHARLVYDHVSD 322
Query: 405 IIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK 464
++ SS E W ++ + ++ LY S+ + R T + + +
Sbjct: 323 WLE----TGSS----EQWQPS------EEIAQVVRDLYAFSQARANWRETHAVVFPD--R 366
Query: 465 PVFLFDEYGTPYDSVL---SGREDLNFLFEEFMLLANKTAAEVIARAF 509
P + F E D V R N L EE M+ AN A + + F
Sbjct: 367 PDYRF-ELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTF 413
Score = 84 (34.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNA 625
H+A+ VY +TSP+R+Y D++ HR L A
Sbjct: 490 HFAMGLDVYATWTSPIRKYGDMINHRLLKA 519
>UNIPROTKB|P30850 [details] [associations]
symbol:rnb "ribonuclease II" species:83333 "Escherichia
coli K-12" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IGI] [GO:0016078
"tRNA catabolic process" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] HAMAP:MF_01036
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011804 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016078 GO:GO:0008408 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 BRENDA:3.1.13.1
GO:GO:0008859 EMBL:X67913 PIR:A64877 RefSeq:NP_415802.1
RefSeq:YP_489554.1 PDB:2ID0 PDB:2IX0 PDB:2IX1 PDBsum:2ID0
PDBsum:2IX0 PDBsum:2IX1 ProteinModelPortal:P30850 SMR:P30850
DIP:DIP-10724N IntAct:P30850 MINT:MINT-1248196 PaxDb:P30850
PRIDE:P30850 EnsemblBacteria:EBESCT00000004108
EnsemblBacteria:EBESCT00000004109 EnsemblBacteria:EBESCT00000015364
GeneID:12934347 GeneID:945864 KEGG:ecj:Y75_p1261 KEGG:eco:b1286
PATRIC:32117840 EchoBASE:EB1577 EcoGene:EG11620 eggNOG:COG4776
HOGENOM:HOG000271427 KO:K01147 OMA:ERDIADW ProtClustDB:PRK05054
BioCyc:EcoCyc:EG11620-MONOMER BioCyc:ECOL316407:JW1279-MONOMER
BioCyc:MetaCyc:EG11620-MONOMER EvolutionaryTrace:P30850
Genevestigator:P30850 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 Uniprot:P30850
Length = 644
Score = 183 (69.5 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 75/273 (27%), Positives = 120/273 (43%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+E L R+DL TID ++ D+DDAL + L D ++ V IAD + ++ G+ LD
Sbjct: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR--WIGR 388
A++R+ + Y+ IPMLP LS+++ SL R + L++ G + D +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303
Query: 389 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 448
T I S KL Y+ D ++ NT G+ W Q E + ++ L ++ +
Sbjct: 304 T-IESKAKLVYDQVSDWLE--------NT-GD-W-----QPESEAIAEQVRLLAQICQRR 347
Query: 449 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
+ R + + F+ E G D V R N + EE M+ AN AA V+ R
Sbjct: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-RD 406
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLD 541
+ H + A HGL +D
Sbjct: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVD 439
>ASPGD|ASPL0000038338 [details] [associations]
symbol:AN9151 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:BN001306
GO:GO:0003723 GO:GO:0004540 EnsemblFungi:CADANIAT00009455
OMA:WIHVHVA Uniprot:C8VK46
Length = 1050
Score = 149 (57.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 42/144 (29%), Positives = 77/144 (53%)
Query: 276 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISR-VGVHIADVSYFVLPGTALDIEAQV 334
RKD ++ +D A ++DD +S+ER+ S + VH+A+ S ++ G L A
Sbjct: 553 RKDWGELPVYCVDAIDAQEIDDGISLERIPGSDSFWIHVHVANPSSYLNVGHRLIEYAAA 612
Query: 335 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSC 394
R ++Y+ +R P+LP L++E SL PG L FS LN G V++ + V+R+
Sbjct: 613 RLQTLYVPERTYPILPPSLTQEHFSLAPGRPCLTFSA--KLNLQGQVLESNVTNGVVRNV 670
Query: 395 CKLSYEHAQDIIDGKFDVESSNTL 418
++++ + + F VE+ +++
Sbjct: 671 KYITHDKLRSV----FGVEADSSM 690
Score = 88 (36.0 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNN 644
H L Y TSPLRRY DL+ H + AAL E +H R L +N
Sbjct: 864 HIPLGLDAYVKSTSPLRRYSDLLAHYQIEAALRFEH---EHGRRLDASN 909
>UNIPROTKB|G4MRS6 [details] [associations]
symbol:MGG_13800 "Mitochondrial protein cyt-4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 EMBL:CM001231 GO:GO:0043581
GO:GO:0004540 RefSeq:XP_003710903.1 ProteinModelPortal:G4MRS6
EnsemblFungi:MGG_13800T0 GeneID:5049017 KEGG:mgr:MGG_13800
Uniprot:G4MRS6
Length = 1091
Score = 136 (52.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 63/200 (31%), Positives = 92/200 (46%)
Query: 275 SRKDLRNFCIFTIDPSTATDLDDALSIERLSD-GISRVGVHIADVSYFVLPGTALDIEAQ 333
SRKD + F ID + D+DDA+S+ER S G + VH+ADV+ V P +A A+
Sbjct: 547 SRKDWGDLTAFAIDDAKTEDIDDAVSVERTSTAGQYWIHVHVADVASIVRPNSAHAQYAE 606
Query: 334 VRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRS 393
S + Y MLP L + SL PG L FS +N G++++ I ++R
Sbjct: 607 KLSETHYYPGHFARMLPDLGILQHLSLAPGSRALTFSGL--VNEKGELLECKITPGILRK 664
Query: 394 CCKLSYEHAQDIIDGKFDVESSN----TLGEGWPQLYGQFEWSDVVRSIKSL-----YEV 444
+ + E++N TL G Q G F ++ + IKS +EV
Sbjct: 665 VVNIEPAEVAKVCPQTPQPETTNGSALTLCVG--QRSGSF-YTPTNKKIKSADDLDAHEV 721
Query: 445 SKI-LKDKRFTDGALR-LEN 462
+ L D+ T LR LEN
Sbjct: 722 EDLKLLDRLATSYYLRRLEN 741
Score = 87 (35.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 32/88 (36%), Positives = 37/88 (42%)
Query: 596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLT 655
H+ L Y TSPLRRY D+V H ++AAL AE+ P REG FL
Sbjct: 877 HFWLGLKHYVKVTSPLRRYLDIVAHFQIHAAL-AEEARTGKTLQAP----REGEEHSFLP 931
Query: 656 GIFYDKDAAESLEGREALSVAALKYGVP 683
D A L V AL G P
Sbjct: 932 FTRADLAAKLPLLAMRESRVRALSMGGP 959
>SGD|S000004900 [details] [associations]
symbol:DSS1 "3'-5' exoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0008859 "exoribonuclease II
activity" evidence=IEA;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0000957 "mitochondrial RNA
catabolic process" evidence=IMP] [GO:0045025 "mitochondrial
degradosome" evidence=IDA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 SGD:S000004900 GO:GO:0005759
GO:GO:0003723 EMBL:BK006946 EMBL:Z49704 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 BRENDA:3.1.13.1 EMBL:U15461
EMBL:D90217 PIR:S54594 RefSeq:NP_014014.1 ProteinModelPortal:P39112
DIP:DIP-2936N IntAct:P39112 MINT:MINT-547765 STRING:P39112
PaxDb:P39112 EnsemblFungi:YMR287C GeneID:855331 KEGG:sce:YMR287C
CYGD:YMR287c OMA:VFCIDSE OrthoDB:EOG4FBN29 NextBio:979055
Genevestigator:P39112 GermOnline:YMR287C GO:GO:0045025
GO:GO:0008859 GO:GO:0000957 Uniprot:P39112
Length = 969
Score = 124 (48.7 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 65/250 (26%), Positives = 111/250 (44%)
Query: 278 DLRNFCIFTIDPSTATDLDDALSIERLS-DGISRVGVHIADVSYFVLPGTALDIE----- 331
DLR FCI D TA ++DD +S++ DG+ + +HIAD + T +DIE
Sbjct: 527 DLRVFCI---DSETAHEIDDGVSVKNYGRDGLYTLYIHIADPTSMFPESTNVDIEGISTD 583
Query: 332 ----AQVRSTSVYMLQRKIPMLPVLLSE--EVGSLNPGVDRLAFSIFWDLNSAGDVVDRW 385
A RS + Y+ +PMLP + ++G ++FS+ D+ + +
Sbjct: 584 ILNVALKRSFTTYLPDTVVPMLPQSICHLSDLGKQGQRTKTISFSV--DVK----ITSKC 637
Query: 386 IGRTVIRSCCKLSYEHAQDIIDG--KFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 443
G+++ S++ + I+ K E + + G P E S V + ++SL
Sbjct: 638 SGKSI--EIMYDSFKIRKGIVSNFPKATYEDVDRI-LGTPNS----EASPVKKDLESLSM 690
Query: 444 VSKILKDKRF--TDGALRLE--NSKPVFL-FDEYGTPYDSVLSGREDL--NFLFEEFMLL 496
+SK+L+++R ++ + E N V L D G + S +E+ L E M+L
Sbjct: 691 ISKLLREQRIKNSNAVIFGEGFNKGLVMLNADSEGELTEVTFSDQEETLSTILVSEMMIL 750
Query: 497 ANKTAAEVIA 506
AN A
Sbjct: 751 ANTLTGRYFA 760
Score = 70 (29.7 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 581 SYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKL 632
S + F + H + Y TSPLRR+PDL+ H ++ L+ + L
Sbjct: 806 SSLLNSSFYTGRPFRHEMIGAKQYLTVTSPLRRFPDLINHLQIHRHLQKKPL 857
>POMBASE|SPCC1322.01 [details] [associations]
symbol:rpm1 "3'-5' exonuclease for RNA 3' ss-tail"
species:4896 "Schizosaccharomyces pombe" [GO:0000965 "mitochondrial
RNA 3'-end processing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005759
"mitochondrial matrix" evidence=ISO] [GO:0008859 "exoribonuclease
II activity" evidence=ISO] [GO:0006401 "RNA catabolic process"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
PomBase:SPCC1322.01 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005759 GO:GO:0003723 eggNOG:COG0557 GO:GO:0008859
GO:GO:0000965 RefSeq:NP_588129.2 ProteinModelPortal:Q1MTN7
STRING:Q1MTN7 EnsemblFungi:SPCC1322.01.1 GeneID:2538798
KEGG:spo:SPCC1322.01 OrthoDB:EOG4NKG3S NextBio:20799980
Uniprot:Q1MTN7
Length = 957
Score = 141 (54.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 92/426 (21%), Positives = 169/426 (39%)
Query: 214 WNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEEL 273
W F Q + + G G PQ++A+ YE C+ F V E+
Sbjct: 455 WQPPRLFQQEY--SIAGLG--TNPQLDAV-YERE--CNHFKK-------FVKNELKDSLE 500
Query: 274 LSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQ 333
R DLR+ F D S+ ++DDA+S+E L S + +H+A+ + V + L A+
Sbjct: 501 SQRVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANPTSTVDIRSPLGTFAE 560
Query: 334 VRSTSVYMLQRKIPMLPVLLSEEVGSLNPG-VDRLAFSIFWDLNSAGDVVDRWIGRTVIR 392
++Y + + MLP+ ++++ SL+ + A + ++ GD++D + + I
Sbjct: 561 RNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKISKNGDILDYKVRPSFIS 620
Query: 393 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 452
S K + + + + G + G +D ++ I +YE+SK R
Sbjct: 621 SVIKYTPQQLDKALHSNRSIAKDIVSGPVDEETKGVS--NDHMKDILRIYELSKQACFSR 678
Query: 453 FTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNF--LFEEFMLLA-NKTAAEVIARAF 509
A + P PY+ G DLN + F ++ N + +A +
Sbjct: 679 LQKFAFVIAQPTPTVELLPNNVPYNL---G--DLNHPVYWSSFPTISLNVSEGYSLAESV 733
Query: 510 PDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKL-------KDD 562
++ A + L F +H +L GQ + ++ R K +
Sbjct: 734 ISECMIL---AGRVSSL-----FFQEH--KLPGIFRGQPYPIMDGVRRKAFETLLSNRSS 783
Query: 563 YVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPV-YTHFTSPLRRYPDLVVHR 621
+ L + + + P+ +S+ S T H++L Y TSPLRR+ D H
Sbjct: 784 WGLVETKYSLSVMPLFESSHLAS------TPVSHFSLGLKDGYIQSTSPLRRFTDFFTHH 837
Query: 622 TLNAAL 627
+ + L
Sbjct: 838 QIQSVL 843
>CGD|CAL0000344 [details] [associations]
symbol:orf19.3624 species:5476 "Candida albicans" [GO:0045025
"mitochondrial degradosome" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] [GO:0000957
"mitochondrial RNA catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0000344
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 EMBL:AACQ01000103
RefSeq:XP_714466.1 ProteinModelPortal:Q59Y25 GeneID:3643919
KEGG:cal:CaO19.3624 Uniprot:Q59Y25
Length = 1146
Score = 140 (54.3 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 47/151 (31%), Positives = 75/151 (49%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSI-ERLSDGISRVGVHIADVSYFVLPG 325
E P + L R+D+R I+ ID TA ++DD +SI E D I V +H+A+ S ++ P
Sbjct: 633 EDPLQHL--RQDMREIPIYCIDDPTAHEIDDGISIHEDQQDYI--VSIHVAEPSSYIKPN 688
Query: 326 TALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW 385
+ + A ++++ YM P+LP L+S+ G P D F I + ++ VD +
Sbjct: 689 SIISSLAFEKTSTSYMPDTAFPLLPKLVSDIAGLGIPDKDTRTFVIQYRVDKK--TVDEY 746
Query: 386 IGRTVIRSCCKLSYEHAQDIIDGKFDVESSN 416
I V K+ II + + ESSN
Sbjct: 747 ISNKVNDKNYKVDQSLLDQIIS-QIN-ESSN 775
Score = 49 (22.3 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 12 EDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDS-SSEAYNQEMIE 68
E +NLPTE N + + K K Y Y + L +E ++ ++E YN++ ++
Sbjct: 585 EQANLPTEENASANTLTKQKF-----YNYMDQELANETPNEILQNTIANEIYNEDPLQ 637
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 880 868 0.00084 122 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 629 (67 KB)
Total size of DFA: 446 KB (2212 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.52u 0.10s 71.62t Elapsed: 00:00:03
Total cpu time: 71.54u 0.10s 71.64t Elapsed: 00:00:03
Start: Tue May 21 10:17:51 2013 End: Tue May 21 10:17:54 2013