BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002793
(880 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease
Length = 977
Score = 249 bits (635), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 259/497 (52%), Gaps = 50/497 (10%)
Query: 180 MVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQI 239
++++ K LP ++ R ++ +V + ID W +P H + G + +
Sbjct: 400 VILMDKCLP-KVRIRTRRAAELLDKRIVIS-IDSWPTTHKYPLGHFVRDLGTIESAQAET 457
Query: 240 NAILYENAICCSGFSPESLSCLPCV------------PWEVPQEELLS-RKDLRNFCIFT 286
A+L E+ + FS + L CLP P V ++ LL+ RKDLR+ I +
Sbjct: 458 EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICS 517
Query: 287 IDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKI 346
IDP D++DAL ++L +G VGVHIADV++FV PGTALD E R TSVY++ ++I
Sbjct: 518 IDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRI 577
Query: 347 PMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDII 406
MLP+LL ++ SL P VDR AFS+ W+L+ + ++V+ ++VIRS SYE AQ I
Sbjct: 578 DMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI 637
Query: 407 DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK-P 465
D K ++ L G +++L ++S LK KR GAL L + +
Sbjct: 638 DDK---TQNDELTMG----------------MRALLKLSVKLKQKRLEAGALNLASPEVK 678
Query: 466 VFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAP---N 522
V + E P + + N L EEFMLLAN + A I AFP +A+LRRH AP N
Sbjct: 679 VHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTN 738
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQLAS 581
L E ++ + + SS SL++ + +D Y F+ L+ +TR M A
Sbjct: 739 FEILNEM--LNTRKNMSISLESSKALADSLDRCVDP-EDPY--FNTLVRIMSTRCMMAAQ 793
Query: 582 YFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR---- 637
YF SG + D+ HY LA +YTHFTSP+RRY D+V HR L A+ E L HR
Sbjct: 794 YFYSGAYS-YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNK 852
Query: 638 -RMLPKNNHREGVRGRF 653
M+ +N +R+ +F
Sbjct: 853 MDMICRNINRKHRNAQF 869
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 1003
Score = 248 bits (634), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 259/497 (52%), Gaps = 50/497 (10%)
Query: 180 MVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQI 239
++++ K LP ++ R ++ +V + ID W +P H + G + +
Sbjct: 426 VILMDKCLP-KVRIRTRRAAELLDKRIVIS-IDSWPTTHKYPLGHFVRDLGTIESAQAET 483
Query: 240 NAILYENAICCSGFSPESLSCLPCV------------PWEVPQEELLS-RKDLRNFCIFT 286
A+L E+ + FS + L CLP P V ++ LL+ RKDLR+ I +
Sbjct: 484 EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICS 543
Query: 287 IDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKI 346
IDP D++DAL ++L +G VGVHIADV++FV PGTALD E R TSVY++ ++I
Sbjct: 544 IDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRI 603
Query: 347 PMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDII 406
MLP+LL ++ SL P VDR AFS+ W+L+ + ++V+ ++VIRS SYE AQ I
Sbjct: 604 DMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI 663
Query: 407 DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK-P 465
D K ++ L G +++L ++S LK KR GAL L + +
Sbjct: 664 DDK---TQNDELTMG----------------MRALLKLSVKLKQKRLEAGALNLASPEVK 704
Query: 466 VFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAP---N 522
V + E P + + N L EEFMLLAN + A I AFP +A+LRRH AP N
Sbjct: 705 VHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTN 764
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQLAS 581
L E ++ + + SS SL++ + +D Y F+ L+ +TR M A
Sbjct: 765 FEILNEM--LNTRKNMSISLESSKALADSLDRCVDP-EDPY--FNTLVRIMSTRCMMAAQ 819
Query: 582 YFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR---- 637
YF SG + D+ HY LA +YTHFTSP+RRY D+V HR L A+ E L HR
Sbjct: 820 YFYSGAYS-YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNK 878
Query: 638 -RMLPKNNHREGVRGRF 653
M+ +N +R+ +F
Sbjct: 879 MDMICRNINRKHRNAQF 895
>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44
Length = 760
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 162/447 (36%), Positives = 226/447 (50%), Gaps = 39/447 (8%)
Query: 207 VAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV-- 264
+ ID W +P H + G + + A+L E+ + FS + L CLP
Sbjct: 208 IVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGH 267
Query: 265 ----------PWEVPQEELLS-RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGV 313
P V ++ LL+ RKDLR+ I +IDP D++DAL ++L +G VGV
Sbjct: 268 DWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGV 327
Query: 314 HIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFW 373
HIADV++FV PGTALD E R TSVY++ ++I LP LL ++ SL P VDR AFS+ W
Sbjct: 328 HIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDXLPXLLGTDLCSLKPYVDRFAFSVIW 387
Query: 374 DLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSD 433
+L+ + ++V+ ++VIRS SYE AQ ID K ++ L G
Sbjct: 388 ELDDSANIVNVNFXKSVIRSREAFSYEQAQLRIDDK---TQNDELTXG------------ 432
Query: 434 VVRSIKSLYEVSKILKDKRFTDGALRLENSK-PVFLFDEYGTPYDSVLSGREDLNFLFEE 492
++L ++S LK KR GAL L + + V E P + + N L EE
Sbjct: 433 ----XRALLKLSVKLKQKRLEAGALNLASPEVKVHXDSETSDPNEVEIKKLLATNSLVEE 488
Query: 493 FMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF-EAFCSKHGLQLDTSSSGQFHQS 551
F LLAN + A I AFP +A LRRH AP E ++ + SS S
Sbjct: 489 FXLLANISVARKIYDAFPQTAXLRRHAAPPSTNFEILNEXLNTRKNXSISLESSKALADS 548
Query: 552 LEQAREKLKDDYVLFDILINY-ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSP 610
L++ + +D Y F+ L+ +TR A YF SG + D+ HY LA +YTHFTSP
Sbjct: 549 LDRCVDP-EDPY--FNTLVRIXSTRCXXAAQYFYSGAYS-YPDFRHYGLAVDIYTHFTSP 604
Query: 611 LRRYPDLVVHRTLNAALEAEKLYWKHR 637
+RRY D+V HR L A+ E L HR
Sbjct: 605 IRRYCDVVAHRQLAGAIGYEPLSLTHR 631
>pdb|2IX0|A Chain A, Rnase Ii
Length = 663
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 150/362 (41%), Gaps = 29/362 (8%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+E L R+DL TID ++ D+DDAL + L D ++ V IAD + ++ G+ LD
Sbjct: 203 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 262
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW-IGRT 389
A++R+ + Y+ IPMLP LS+++ SL R + L++ G + D
Sbjct: 263 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 322
Query: 390 VIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
I S KL Y+ D ++ D W Q E + ++ L ++ +
Sbjct: 323 TIESKAKLVYDQVSDWLENTGD----------W-----QPESEAIAEQVRLLAQICQRRG 367
Query: 450 DKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAF 509
+ R + + F+ E G D V R N + EE M+ AN AA V+ R
Sbjct: 368 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-RDK 426
Query: 510 PDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDIL 569
+ H + A HGL +D + RE D
Sbjct: 427 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLD-- 484
Query: 570 INYATRPMQLASYFCSGDFKDDTDWG-HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
+R + S+ + T+ G H+ L Y +TSP+R+Y D++ HR L A ++
Sbjct: 485 ----SRIRRFQSF-----AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 535
Query: 629 AE 630
E
Sbjct: 536 GE 537
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant
Length = 664
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 150/362 (41%), Gaps = 29/362 (8%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+E L R+DL TID ++ D++DAL + L D ++ V IAD + ++ G+ LD
Sbjct: 204 DEGLVREDLTALDFVTIDSASTEDMNDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 263
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW-IGRT 389
A++R+ + Y+ IPMLP LS+++ SL R + L++ G + D
Sbjct: 264 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 323
Query: 390 VIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
I S KL Y+ D ++ D W Q E + ++ L ++ +
Sbjct: 324 TIESKAKLVYDQVSDWLENTGD----------W-----QPESEAIAEQVRLLAQICQRRG 368
Query: 450 DKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAF 509
+ R + + F+ E G D V R N + EE M+ AN AA V+ R
Sbjct: 369 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-RDK 427
Query: 510 PDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDIL 569
+ H + A HGL +D + RE D
Sbjct: 428 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLD-- 485
Query: 570 INYATRPMQLASYFCSGDFKDDTDWG-HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
+R + S+ + T+ G H+ L Y +TSP+R+Y D++ HR L A ++
Sbjct: 486 ----SRIRRFQSF-----AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 536
Query: 629 AE 630
E
Sbjct: 537 GE 538
>pdb|2R7D|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7D|B Chain B, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7D|C Chain C, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7F|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Hexagonal Crystal Form.
Northeast Structural Genomics Target Drr63
Length = 469
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 17/141 (12%)
Query: 269 PQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTAL 328
P EE R DL + F ID D DDA+ +E L G++R+ VH+ADV+ V P + L
Sbjct: 77 PAEE---RLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPL 133
Query: 329 DIEAQVRSTSVYMLQRKIPMLPVLLSEEVG----SLNPGVDRLAFSIFWDLNSAG--DVV 382
D+EA+ R ++Y+ R I LP L + G ++P A SI DL+ G + V
Sbjct: 134 DLEARARGATLYLPDRTIGXLPDELVAKAGLGLHEVSP-----ALSICLDLDPDGNAEAV 188
Query: 383 DRWIGRTVIRSCCKLSYEHAQ 403
D + R ++ +L+Y+ AQ
Sbjct: 189 DVLLTRVKVQ---RLAYQEAQ 206
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
H+ +Y TSP RRY DLVVH+ L A L
Sbjct: 327 HHGXGLDLYAQATSPXRRYLDLVVHQQLRAFL 358
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii
pdb|2ID0|B Chain B, Escherichia Coli Rnase Ii
pdb|2ID0|C Chain C, Escherichia Coli Rnase Ii
pdb|2ID0|D Chain D, Escherichia Coli Rnase Ii
Length = 644
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 144/362 (39%), Gaps = 29/362 (8%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+E L R+DL TID ++ D DDAL + L D ++ V IAD + ++ G+ LD
Sbjct: 184 DEGLVREDLTALDFVTIDSASTEDXDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW-IGRT 389
A++R+ + Y+ IP LP LS+++ SL R + L++ G + D
Sbjct: 244 AAKIRAFTNYLPGFNIPXLPRELSDDLCSLRANEVRPVLACRXTLSADGTIEDNIEFFAA 303
Query: 390 VIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
I S KL Y+ D ++ D W Q E + ++ L ++ +
Sbjct: 304 TIESKAKLVYDQVSDWLENTGD----------W-----QPESEAIAEQVRLLAQICQRRG 348
Query: 450 DKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAF 509
+ R + + F+ E G D V R N + EE + AN AA V+ R
Sbjct: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAXIAANICAARVL-RDK 407
Query: 510 PDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDIL 569
+ H + A HGL +D + RE D
Sbjct: 408 LGFGIYNVHXGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR 467
Query: 570 INYATRPMQLASYFCSGDFKDDTDWG-HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
I +++ T+ G H+ L Y +TSP+R+Y D + HR L A ++
Sbjct: 468 IRRFQSFAEIS-----------TEPGPHFGLGLEAYATWTSPIRKYGDXINHRLLKAVIK 516
Query: 629 AE 630
E
Sbjct: 517 GE 518
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 335
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 582 YFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVV 619
Y +GD K WGH + PV+ + +R++P++ V
Sbjct: 45 YPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDV 82
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 582 YFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVV 619
Y +GD K WGH + PV+ + +R++P++ V
Sbjct: 531 YPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDV 568
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 334
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 566 FDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVV 619
FD + + + Y +GD K WGH + PV+ + R++P++ V
Sbjct: 29 FDYVCSRDEPSVAAXVYPFTGDHKQKFYWGHKEILIPVFKNXADAXRKHPEVDV 82
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
pdb|1QAP|B Chain B, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
Length = 296
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 728 ARVLALGPRFMTIYIEKL---AIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRG 784
ARVL G R +++ L A E R Y + G + L+T TL A K + G
Sbjct: 110 ARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAVLCG 169
Query: 785 GPGNYR-ALEEVALVVRPNDLKEEHGMFGGSVNKC 818
G N+R L + L+ KE H + GSV +
Sbjct: 170 GGANHRLGLTDAFLI------KENHIIASGSVRQA 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,725,648
Number of Sequences: 62578
Number of extensions: 1127595
Number of successful extensions: 2549
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2526
Number of HSP's gapped (non-prelim): 15
length of query: 880
length of database: 14,973,337
effective HSP length: 107
effective length of query: 773
effective length of database: 8,277,491
effective search space: 6398500543
effective search space used: 6398500543
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)