BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002793
(880 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/679 (37%), Positives = 357/679 (52%), Gaps = 88/679 (12%)
Query: 76 NGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVG 135
+G P T D T +S + +++R + +VV I+E+ R G
Sbjct: 204 DGDAPVTKDETTCISQDTRALSEKSLQR-------------SAKVVYILEKKHSR-AATG 249
Query: 136 FLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRL 195
FL + A KN R+Y +P+ + P++ V +KD P R
Sbjct: 250 FLKLL------------ADKNSELF----RKYALFSPSDHRVPRIYVPLKDCPQDFVARP 293
Query: 196 EEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSP 255
++ T L RI +W E+ F + G+ GE+EP+ IL E + S FS
Sbjct: 294 KDYANT----LFICRIVDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSS 349
Query: 256 ESLSCLP-CVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVH 314
E L CLP +PW +P EE R+DLR CIFTIDPSTA DLDDALS + L+DG +VGVH
Sbjct: 350 EVLECLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVH 409
Query: 315 IADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWD 374
IADVSYFV G+ LD A R+TSVY++Q+ +PMLP LL EE+ SLNP D+L FS+ W
Sbjct: 410 IADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWT 469
Query: 375 LNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDV 434
L G ++D W GRT+IRSC KLSYEHAQ +I+ + + L P + + +V
Sbjct: 470 LTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPAKEL----PPISPEHSSEEV 525
Query: 435 VRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEF 493
+++ +L+ ++K L+ +RF DGALRL+ K F D E G P + + N L EEF
Sbjct: 526 HQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEF 585
Query: 494 MLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLE 553
MLLAN A I RAFP+ ALLRRHP P R L + FC + GL +D SS+G ++SL
Sbjct: 586 MLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLT 645
Query: 554 QAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRR 613
Q K ++L N +RPMQ+A YFCSG +D + HYAL P+YTHFTSP+RR
Sbjct: 646 QTFGDDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRR 705
Query: 614 YPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREAL 673
+ D++VHR L AAL G R R D A
Sbjct: 706 FADVLVHRLLAAAL--------------------GYRERL--------DMA--------- 728
Query: 674 SVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLAL 733
D L A HCNDR++A + V++ L+ +L+K+ L SEA V+ +
Sbjct: 729 -----------PDTLQKQADHCNDRRMASKRVQELSTSLFFAVLVKESGPLESEAMVMGI 777
Query: 734 GPRFMTIYIEKLAIERRIY 752
+ + + + +++RIY
Sbjct: 778 LKQAFDVLVLRYGVQKRIY 796
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/645 (37%), Positives = 346/645 (53%), Gaps = 81/645 (12%)
Query: 165 REYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAH 224
++Y +P+ + P++ V +KD P R ++ T L RI +W E+ F
Sbjct: 261 KKYALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANT----LFICRIIDWKEDCNFALGQ 316
Query: 225 VLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP-CVPWEVPQEELLSRKDLRNFC 283
+ G+ GE+EP+ IL E + S FS E L CLP +PW +P +E+ R+DLR C
Sbjct: 317 LAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPDEVGKRRDLRKDC 376
Query: 284 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
IFTIDPSTA DLDDAL+ RL+DG VGVHIADVSYFV G++LD A R+TSVY++Q
Sbjct: 377 IFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ 436
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 403
+ +PMLP LL EE+ SLNP D+L FS+ W L G +++ W GRT+IRSC KLSY+HAQ
Sbjct: 437 KVVPMLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLSYDHAQ 496
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
+I+ + E P + + +V +++ +L+ ++K L+ +RF DGALRL+
Sbjct: 497 SMIENP----TEKIPEEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQL 552
Query: 464 KPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPN 522
K F D E G P + D N L EEFMLLAN A I R FP+ ALLRRHP P
Sbjct: 553 KLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQ 612
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASY 582
+ L + FC + GL +D SS+G ++SL + K ++L N +RPMQ+A Y
Sbjct: 613 TKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVLTNMYSRPMQMALY 672
Query: 583 FCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPK 642
FCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL Y + + P
Sbjct: 673 FCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALG----YSEQPDVEPD 728
Query: 643 NNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLAC 702
++ A HCNDR++A
Sbjct: 729 TLQKQ--------------------------------------------ADHCNDRRMAS 744
Query: 703 RNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVE 762
+ V++ + L+ +L+K+ L SEA V+ + + + + + +++RIY +
Sbjct: 745 KRVQELSIGLFFAVLVKESGPLESEAMVMGVLNQAFDVLVLRFGVQKRIYCN-------- 796
Query: 763 WLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEE 807
+L SF++ G E+ LV P+DL+EE
Sbjct: 797 ----------ALALRSYSFQKVGKK-----PELTLVWEPDDLEEE 826
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 243/641 (37%), Positives = 340/641 (53%), Gaps = 81/641 (12%)
Query: 117 TGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPK 176
T +VV I+E+ R GF+ K S L+ R+ +P +
Sbjct: 203 TAKVVYILEKKHSR-AATGFI-------------KPLSDKSSDLA---RKRALFSPVDHR 245
Query: 177 YPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVE 236
P++ V + D P E T L I W ++S F + ++ G+ GE+E
Sbjct: 246 LPRIYVPLGDCPHDFAIHPE----TYANTLFICSITAWRDDSNFAEGKLMKSLGQAGEIE 301
Query: 237 PQINAILYENAICCSGFSPESLSCLPC-VPWEVPQEELLSRKDLRNFCIFTIDPSTATDL 295
P+ IL E + S F + L CLP +PW +PQEE RKDLRN CIFTIDP+TA DL
Sbjct: 302 PETEGILVEYGVDFSDFPDKVLQCLPQDLPWTIPQEEFQKRKDLRNECIFTIDPATARDL 361
Query: 296 DDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSE 355
DDALS + L DG VGVHIADVSYFV G+ALDI A R+TSVY++Q+ IPMLP LL E
Sbjct: 362 DDALSCKPLPDGNFEVGVHIADVSYFVAEGSALDIMASERATSVYLVQKVIPMLPRLLCE 421
Query: 356 EVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESS 415
E+ SLNP DRL FS+ W + G+++D W GR+VI SC KLSY+HAQ++I+
Sbjct: 422 ELCSLNPMTDRLTFSVIWKITPQGEILDEWFGRSVICSCVKLSYDHAQNMINHPDKKIEQ 481
Query: 416 NTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGT 474
+ L P + Q +++ +++ +L+ +++ L+ +RF DGALRL+ K F D E G
Sbjct: 482 HEL----PPVSPQHTINEIHQAVLNLHLIAQNLRKQRFDDGALRLDQLKLTFTLDKESGL 537
Query: 475 PYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCS 534
P + D N L EEFMLLAN A I R FP+ ALLRRHP P + L + FC
Sbjct: 538 PQGCYIYQYRDSNKLVEEFMLLANMAVAHHIYRRFPEEALLRRHPPPQTKMLNDLIEFCD 597
Query: 535 KHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDW 594
+ GLQLD +SSG H+SL E + ++L N +RPMQ+A YFC+G KD+T +
Sbjct: 598 QMGLQLDFTSSGTLHKSLNDQFETDEYSAARKEVLTNMCSRPMQMAVYFCTGALKDETLF 657
Query: 595 GHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFL 654
HYAL P+YTHFTSP+RR+ D++VHR
Sbjct: 658 HHYALNVPLYTHFTSPIRRFADVIVHR--------------------------------- 684
Query: 655 TGIFYDKDAAESLEGREALSVAALKYGVPCA---DILVNVATHCNDRKLACRNVKDACVK 711
L A+L G P +++ A HCNDRK A + V++ +
Sbjct: 685 ------------------LLAASLGCGPPLKMPKEVIQKQADHCNDRKTASKRVQELSAE 726
Query: 712 LYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIY 752
L+ + +K+ L SEA V+ + + + + +++RIY
Sbjct: 727 LFFSVFVKECGPLESEAMVMGVLNEAFDVIVLRFGVQKRIY 767
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/555 (39%), Positives = 309/555 (55%), Gaps = 33/555 (5%)
Query: 84 DSTEKVSSSQQND----GMNAIERL--SAMISSYPTKRPTGRVVSIIERSPRRDGIVGFL 137
+ EKV +D M +ERL ++ S R RVV+I E+ IVG L
Sbjct: 255 NGVEKVKIKDHDDELGGAMEHLERLEIKSVASFKGDSRTRARVVAI-EKRAEISKIVGIL 313
Query: 138 NVNQWF--NYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRL 195
W N + S+K + Y P + P + + DL D +
Sbjct: 314 RAPGWSLKNVEYVSKKSS-------------YAIFIPKDKRLPFITIHKNDLSDLSGENW 360
Query: 196 EEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSP 255
E +L + I W+ S +P + G +VE NA+L EN I S FS
Sbjct: 361 IENILKHHDQLFSVEITRWSIYSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSD 420
Query: 256 ESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHI 315
E L+CLP W + EE+ R+DLRN I TIDP TA DLDDA+S L +G VGVHI
Sbjct: 421 EVLNCLPPDDWIISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHI 480
Query: 316 ADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDL 375
ADV++FV P +ALD EA R+T+VY++Q+ IPMLP LL E + SLNP V+RLAFS+FW L
Sbjct: 481 ADVTHFVKPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKL 540
Query: 376 NSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK-FDVESSNTLGEGWPQLYGQFEWSD 433
+S G ++ RW G+TVI++C +L+Y AQ +I+GK +D +G G D
Sbjct: 541 DSNGKEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIG-------GTHTPKD 593
Query: 434 VVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEF 493
V SI +L E+S+ L+ RF GA+ + +++ F DEYG P + + D N L EEF
Sbjct: 594 VETSILTLCEISRKLRKDRFAKGAVEINSTELKFQLDEYGMPNKCEVYEQTDANHLIEEF 653
Query: 494 MLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLE 553
MLLAN++ AE I++ F +++LLRRH +P +++ EF F D SSS F+ S+
Sbjct: 654 MLLANRSVAEHISKNFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMV 713
Query: 554 QAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRR 613
+ R ++ L ++ N A R + A YFC+GDF + TDW HYAL+F YTHFTSP+RR
Sbjct: 714 RLRSTFNEE--LVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRR 771
Query: 614 YPDLVVHRTLNAALE 628
YPD++VHR L +L+
Sbjct: 772 YPDIIVHRLLERSLK 786
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 310 bits (793), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 195/599 (32%), Positives = 297/599 (49%), Gaps = 66/599 (11%)
Query: 168 IQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLH 227
+ T + P++++ D+ R ++ E L A+I +W ES + ++
Sbjct: 226 VLFVATDSRVPRILIPKSDVDKEFFSRPKD----FERFLYTAKITDWRAESVYADGRLVK 281
Query: 228 VFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVP---WEVPQEELLSRKDLRNFCI 284
+ G GE++ + I+YE+ I FS E L LP W+VP E R+D R+ +
Sbjct: 282 LLGMSGEIDTETERIVYEHQIDHREFSDECLESLPITTAENWKVPDAEFEYRRDFRSDIV 341
Query: 285 FTIDPSTATDLDDALSIERLSDGISR------VGVHIADVSYFVLPGTALDIEAQVRSTS 338
FTIDP TA DLDDAL + + D + +GVHIADV++F+ GT LD A R S
Sbjct: 342 FTIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELDKWASERGNS 401
Query: 339 VYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLS 398
Y+ Q IPMLP +L E++ SLNPGVDRL+FS + ++ ++ D W GR+VIRS KL+
Sbjct: 402 TYLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVFKMSYEAELYDVWFGRSVIRSRVKLA 461
Query: 399 YEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGAL 458
YEHAQD I+ E T E P + ++ L+ ++++L+ KR GAL
Sbjct: 462 YEHAQDFIENP---EKDFTCDE-LPDISDGNTPFEIKEKTLMLHRIAQVLRQKREDSGAL 517
Query: 459 RLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRH 518
R+E + F DE P + +D N L EEFMLLAN A+ IA FP+ ALLR H
Sbjct: 518 RIELPRLKFALDEDKKPQGVSIYEIKDSNKLVEEFMLLANMEVAKKIAENFPEHALLRNH 577
Query: 519 PAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQ 578
P P + +++ C++ G LD +SG SL + + K + D + ++ + +PMQ
Sbjct: 578 PPPKEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKSRLDMCIRQVISSLTIKPMQ 637
Query: 579 LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRR 638
A YFC+ + + + H+AL YTHFTSP+RRYPD++VHR L AAL Y +
Sbjct: 638 QAKYFCTFEMP-LSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAALG----YNERSE 692
Query: 639 MLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDR 698
+P+ + + T CND
Sbjct: 693 RVPEE--------------------------------------------IQEICTRCNDT 708
Query: 699 KLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE 757
KLA + D LY + + + + +A VL + + I + + +R+Y D+++
Sbjct: 709 KLASKEASDESAMLYFGVFIHQTGPMKCQAVVLGVMDLSFDVLIVEYGVVKRVYVDKMK 767
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 207/657 (31%), Positives = 330/657 (50%), Gaps = 86/657 (13%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++++ RD +V F ++ + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSIEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK I+ ++ +A + +V RID W S +P H + V GR G++
Sbjct: 373 RIPK-----------IRISTQQAEALQDFRVVV-RIDSWESTSMYPNGHFVRVLGRIGDL 420
Query: 236 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLR-NFCIFTIDPS 290
E +I IL EN+I FS + +P PW+V +E R+DLR +F+IDPS
Sbjct: 421 EGEIATILVENSISVVPFSEAQMCEMPVNTPENPWKVSSQEEREREDLRKTHLVFSIDPS 480
Query: 291 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 350
D+DD LS+ L +G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLP 540
Query: 351 VLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 409
+LS +V SL GVDR A S+ W+L+ ++ W GRT+IRS KL YE AQD++DG
Sbjct: 541 AILSADVCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGN 600
Query: 410 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 469
F V + + Q + ++V +I+ L ++++ ++ KR + GAL LE +
Sbjct: 601 FSVVKDIPEFKDLDEKSRQAKLEELVWAIRKLTDIARHIRAKRDSCGALELEGVEVRIQL 660
Query: 470 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 529
DE +D + +++ E M+LAN A+ I +FP ALLRRHP P+ E
Sbjct: 661 DEKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRRHPPPHQEFFSEL 720
Query: 530 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 589
G +DT S+ SL+ A + +D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKALADSLDNAND--PNDPIVNKLLRSMATQAMSNALYFSTGSCA 778
Query: 590 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGV 649
++ ++ HY LA YTHFTSP+RRY D++VHR L AA+ +K +M + N
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAAISKDK------KMEIQEN----- 826
Query: 650 RGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDAC 709
+F +KD E + H N+R A ++ +
Sbjct: 827 -------LFSNKDLEE-------------------------LCRHINNRNRAAQHSQKQS 854
Query: 710 VKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIV 761
+L+ + K K E +S+ + ++ + ++I + I+ Y +GL+V
Sbjct: 855 TELFQCMYFKDKDPETEERCISDGVIYSIRTNGVLVFIPRFGIKGAAYLRNKDGLVV 911
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 189/523 (36%), Positives = 269/523 (51%), Gaps = 65/523 (12%)
Query: 115 RPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGG-SRKDAKKNRSSLSVPDREYIQLTPT 173
RPTGRVV II+R+ W Y G S+ D K++R L TP
Sbjct: 340 RPTGRVVGIIKRN--------------WRPYCGMLSKSDIKESRRHL---------FTPA 376
Query: 174 HPKYPKMVVLVKDLPDSIKKRLEEGDAT-IEMELVAARIDEWNEESPFPQAHVLHVFGRG 232
+ P++ R+E A+ +E + ID W S +P H + G
Sbjct: 377 DKRIPRI-------------RIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDV 423
Query: 233 GEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTA 292
GE E + +L E+ + FS LS LP +PW + +E++ +R+DLR+ C+ ++DP
Sbjct: 424 GEKETETEVLLLEHDVPHQPFSQAVLSFLPRMPWSITEEDMKNREDLRHLCVCSVDPPGC 483
Query: 293 TDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVL 352
TD+DDAL LS+G VGVHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P L
Sbjct: 484 TDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPEL 543
Query: 353 LSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDV 412
LS + SL VDRLAFS W++N +++ ++VI S L+Y AQ ID
Sbjct: 544 LSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRID----- 598
Query: 413 ESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-E 471
S + + D+ S++ L +++KILK R GAL L + + F D E
Sbjct: 599 --SAAMND------------DITTSLRGLNQLAKILKKGRIEKGALTLSSPEIRFHMDSE 644
Query: 472 YGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEA 531
P D + N + EEFMLLAN + A+ I F + ALLR+HPAP
Sbjct: 645 THDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYDILVK 704
Query: 532 FCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQLASYFCSGDFKD 590
LQ+ T ++ SL++A D+ + L+ ATR M A YFCSG
Sbjct: 705 AAKSKNLQIKTDTAKSLADSLDRAESP---DFPYLNTLLRILATRCMMQAVYFCSG---M 758
Query: 591 DTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLY 633
D D+ HY LA P+YTHFTSP+RRY D++VHR L A+ A+ Y
Sbjct: 759 DNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIGADCTY 801
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 293 bits (749), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 191/522 (36%), Positives = 270/522 (51%), Gaps = 63/522 (12%)
Query: 115 RPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGG-SRKDAKKNRSSLSVPDREYIQLTPT 173
+PTGRVV II+R+ W Y G S+ D K++R L TP
Sbjct: 340 KPTGRVVGIIKRN--------------WRPYCGMLSKSDIKESRRHL---------FTPA 376
Query: 174 HPKYPKMVVLVKDLPDSIKKRLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRG 232
+ P++ R+E A T+E + ID W S +P H + G
Sbjct: 377 DKRIPRI-------------RIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDV 423
Query: 233 GEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTA 292
GE E + +L E+ + FS LS LP +PW + ++++ +R+DLR+ CI ++DP
Sbjct: 424 GEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGC 483
Query: 293 TDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVL 352
TD+DDAL L +G VGVHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P L
Sbjct: 484 TDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPEL 543
Query: 353 LSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDV 412
LS + SL VDRLAFS W++N +++ ++VI S L+Y AQ ID
Sbjct: 544 LSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRID----- 598
Query: 413 ESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-E 471
S+N D+ S++ L +++KILK +R GAL L + + F D E
Sbjct: 599 -SANM-------------NDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSE 644
Query: 472 YGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEA 531
P D + N + EEFMLLAN + A+ I F + ALLR+HPAP
Sbjct: 645 THDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVK 704
Query: 532 FCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDD 591
L++ T ++ +SL+QA E Y L +L ATR M A YFCSG D
Sbjct: 705 AARSRNLEIKTDTAKSLAESLDQA-ESPTFPY-LNTLLRILATRCMMQAVYFCSG---MD 759
Query: 592 TDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLY 633
D+ HY LA P+YTHFTSP+RRY D++VHR L A+ A+ Y
Sbjct: 760 NDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTY 801
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 287 bits (734), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 205/657 (31%), Positives = 325/657 (49%), Gaps = 86/657 (13%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK+ + + T++ V RID W S +P H + V GR G++
Sbjct: 373 RIPKIRISTQQA------------ETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDL 420
Query: 236 EPQINAILYENAICCSGFSPESLSCLPC----VPWEVPQEELLSRKDLR-NFCIFTIDPS 290
E +I IL EN+I FS + +P PW+V EE RKDLR + +F+IDP
Sbjct: 421 EGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVFSIDPK 480
Query: 291 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 350
D+DD LS+ L++G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLP 540
Query: 351 VLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 409
+LS ++ SL GVDR A SI W+L+ A ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 410 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 469
V + + Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 LSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQL 660
Query: 470 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 529
D+ +D + +++ E M+LAN A+ I +FP ALLR+HP P+ E
Sbjct: 661 DDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSEL 720
Query: 530 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 589
G +DT S+ SL+ A + D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKTLADSLDNAND--PHDPIVNRLLRSMATQAMSNALYFSTGSCA 778
Query: 590 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGV 649
++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K +M K N
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK------KMEIKGN----- 826
Query: 650 RGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDAC 709
+F +KD E + H N+R A ++ +
Sbjct: 827 -------LFSNKDLEE-------------------------LCRHINNRNQAAQHSQKQS 854
Query: 710 VKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIV 761
+L+ + K K E +S+ + ++ + ++I + I+ Y +GL++
Sbjct: 855 TELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFIPRFGIKGAAYLKNKDGLVI 911
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 205/657 (31%), Positives = 324/657 (49%), Gaps = 86/657 (13%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK+ + + T++ V RID W S +P H + V GR G++
Sbjct: 373 RIPKIRISTQQA------------ETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDL 420
Query: 236 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLR-NFCIFTIDPS 290
E +I IL EN+I FS + +P PW+V EE RKDLR + +F+IDP
Sbjct: 421 EGEIATILVENSISVIPFSEAQMCEMPVNTPENPWKVSPEEEQKRKDLRKSHLVFSIDPK 480
Query: 291 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 350
D+DD LS+ L++G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLP 540
Query: 351 VLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 409
+LS ++ SL GVDR A SI W+L+ A ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 410 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 469
V + + Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 LSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVRVQL 660
Query: 470 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 529
D+ +D + +++ E M+LAN A+ I +FP ALLR+HP P+ E
Sbjct: 661 DDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSEL 720
Query: 530 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 589
G +DT S+ SL+ A D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKTLADSLDNANG--PHDPIVNRLLRSMATQAMSNALYFSTGSCA 778
Query: 590 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGV 649
++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K +M K N
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK------KMEIKGN----- 826
Query: 650 RGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDAC 709
+F +KD E + H N+R A ++ +
Sbjct: 827 -------LFSNKDLEE-------------------------LCRHINNRNRAAQHSQKQS 854
Query: 710 VKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIV 761
+L+ + K K E +S+ + ++ + ++I + I+ Y +GL++
Sbjct: 855 TELFQCMYFKDKDPATEERCISDGVIYSIRANGVLVFIPRFGIKGAAYLKNKDGLVI 911
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 185/526 (35%), Positives = 285/526 (54%), Gaps = 46/526 (8%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK I+ ++ +A + +V RID W S +P H + V GR G++
Sbjct: 373 RIPK-----------IRISTQQAEALQDFRVVV-RIDSWETTSVYPNGHFVRVLGRIGDL 420
Query: 236 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPS 290
E +I IL EN+I FS + +P PW+V +E R+DLR+ +F+IDP
Sbjct: 421 EGEIATILVENSINVVPFSEAQMCEMPVNTAENPWKVSPKEEQERRDLRSTHLVFSIDPK 480
Query: 291 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 350
D+DDALS+ L++G +GVHIADV++FV P + +D+EA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLP 540
Query: 351 VLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 409
+LS ++ SL GVDR A S+ W+L+ ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 410 F----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKP 465
F D+ TL E Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 FSIVDDIPEFKTLEEQ----NRQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEV 656
Query: 466 VFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRK 525
D+ +D + +++ E M+LAN A+ I +FP ALLR+HP P+
Sbjct: 657 RVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEF 716
Query: 526 LREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCS 585
E G +DT S+ SL+ A + D ++ +L + AT+ M A YF +
Sbjct: 717 FSELRECAKAKGFFIDTRSNKTLADSLDSAND--PSDPLVNKLLRSMATQAMSNALYFST 774
Query: 586 GDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
G ++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 775 GSCAEE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 279 bits (714), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 181/522 (34%), Positives = 280/522 (53%), Gaps = 38/522 (7%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK I+ ++ +A + +V RID W S +P H + V GR G++
Sbjct: 373 RIPK-----------IRISTQQAEALQDFRVVV-RIDSWEATSVYPNGHFVRVLGRIGDL 420
Query: 236 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPS 290
E +I IL EN+I FS + +P PW+V +E RKDLR +F+IDP
Sbjct: 421 EGEIATILVENSISVVPFSEAQMCEMPVNTPENPWKVSPKEEQERKDLRTTHLVFSIDPK 480
Query: 291 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 350
D+DD LS+ L++G +GVHIADV++FV P + +D+EA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLP 540
Query: 351 VLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 409
+LS ++ SL GVDR A S+ W+L+ ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 410 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 469
F + + + Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 FSIVDDIPELKALDKQSQQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEVRVQL 660
Query: 470 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 529
D+ D + +++ E M+LAN A+ I +FP ALLR+HP P+ E
Sbjct: 661 DDKKNIRDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSEL 720
Query: 530 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 589
G +DT S+ SL+ A + D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKTLADSLDSAND--PKDPLVNKLLRSMATQAMSNALYFSTGSCA 778
Query: 590 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 275 bits (704), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 188/518 (36%), Positives = 273/518 (52%), Gaps = 41/518 (7%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++R+ RD + F + +G K+A++ + + P
Sbjct: 324 PTGRVVGILQRN-WRDYVATF-PAKEDIETQG---KNAQR------------VLVMPWDY 366
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK I+ ++ +A + +V RID W S +P H + V GR G +
Sbjct: 367 RIPK-----------IRISTQQAEALQDYRVVV-RIDSWESTSLYPNGHFVRVLGRTGNL 414
Query: 236 EPQINAILYENAICCSGFSPESLSCLPC----VPWEVPQEELLSRKDLR-NFCIFTIDPS 290
E +I IL EN+I + FS L+ +P PW+V EE R DLR +F+IDP
Sbjct: 415 EAEIATILVENSISVNPFSEAQLAEMPSNTPESPWQVKPEEG-DRLDLRKTHLVFSIDPK 473
Query: 291 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 350
D+DDALSI +L G +GVHIADV++FV P T DIEA+ R+T+ Y+ R+ MLP
Sbjct: 474 GCEDVDDALSIRKLPSGHLELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLP 533
Query: 351 VLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGK 409
++LS ++ SL GVDR A S+ W+++S+ + R W GRT+IRS KLSYE AQ ++DG
Sbjct: 534 LILSADLCSLLGGVDRYAVSVIWEMDSSTYEIRRVWYGRTIIRSSYKLSYEVAQQLMDG- 592
Query: 410 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 469
D+E NT E P ++ ++ L EV+ + +R GAL LE +
Sbjct: 593 -DLEPLNTEMELHPLKQDPVRLEQLLWAVGKLTEVAHATRMRRDMSGALELEGVEVRVQL 651
Query: 470 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 529
E + D V ++ E M+LAN A+ I +P ALLR HP +E
Sbjct: 652 GEKHSIDDLVPKQPLQMHETIAECMILANHWVAKKIWECYPQHALLRLHPPARQEFFQEL 711
Query: 530 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 589
+ G +DT S+ SL+QA + D ++ +L AT+ M A YF +G +
Sbjct: 712 KECAKARGFSIDTRSNKALADSLDQAND--PSDPLVNQLLRMMATQAMSNARYFSTGSYT 769
Query: 590 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
+D ++ HY LA YTHFTSP+RRY D+VVHR L AA+
Sbjct: 770 ED-EFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAV 806
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 182/518 (35%), Positives = 267/518 (51%), Gaps = 41/518 (7%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++R+ RD +V F K + + + + + P
Sbjct: 325 PTGRVVGIMQRN-WRDYVVTF----------------PAKEDTETQGKNTQKVLVMPWDY 367
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK I+ ++ +A ++ V RID W S +P H + GR G +
Sbjct: 368 RIPK-----------IRISTQQAEA-LQNYRVVVRIDSWESNSLYPNGHFVRALGRAGNL 415
Query: 236 EPQINAILYENAICCSGFSPESLSCLPC----VPWEVPQEELLSRKDLR-NFCIFTIDPS 290
E +I IL EN+I + FS L+ +P PW+V EE R DLR +F+IDP
Sbjct: 416 EAEIATILVENSISLNPFSEAQLAEMPSNTHENPWQVKPEE-GDRLDLRETHLVFSIDPK 474
Query: 291 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 350
D+DDALSI L G +GVHIADV++FV T DIEA+ R+T+ Y+ R+ MLP
Sbjct: 475 GCEDVDDALSIRVLPSGDLELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLP 534
Query: 351 VLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGK 409
++LS ++ SL VDR A S+ W+++ + + R W GRT+IRS KLSYE AQ ++DG
Sbjct: 535 LILSADLCSLLGAVDRYAVSVIWEMDCSTYEIRRVWYGRTIIRSSYKLSYEVAQQLLDG- 593
Query: 410 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 469
D+E +T E P ++ ++ + EV+ + +R GAL LE +
Sbjct: 594 -DLEPLSTEKELHPLKQDPARLQQLLWAVGKMTEVAHATRMRRNMSGALELEGVEVRVQL 652
Query: 470 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 529
E + D V ++ E M+LAN A+ I ++P ALLR HP P +E
Sbjct: 653 GEKHSIDDLVPKQPLQVHETIAECMILANHWVAKKIWESYPQHALLRLHPPPRQEFFQEL 712
Query: 530 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 589
+ G +DT S+ SL+QA + D ++ +L AT+ M A YF +G +
Sbjct: 713 KECAKARGFSIDTRSNKALADSLDQAHD--PSDPLVNQLLRMMATQAMSNARYFSTGSYT 770
Query: 590 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
+D ++ HY LA YTHFTSP+RRY D+VVHR L AA+
Sbjct: 771 ED-EFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAV 807
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 188/534 (35%), Positives = 273/534 (51%), Gaps = 68/534 (12%)
Query: 113 TKR---PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQ 169
TKR PT +VV I++R+ R VG ++ KGGS+ + +
Sbjct: 353 TKRNAHPTAKVVGILKRNWR--PYVGHVDNATIAQSKGGSQ---------------QTVL 395
Query: 170 LTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVF 229
LTP + PK+ + P + +R + ID W+ S +P+ H +
Sbjct: 396 LTPMDRRVPKIRFRTRQAPRLVGRR------------IVVAIDLWDASSRYPEGHFVRDL 443
Query: 230 GRGGEVEPQINAILYENAICCSGFSPESLSCLP--CVPWEVPQEEL----LSRKDLRNFC 283
G E + A+L E + F L CLP W+VP ++ +RKD R+
Sbjct: 444 GEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFRDKL 503
Query: 284 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 343
I +IDP D+DDAL L +G VGVHIADV++FV P T++D EA R T+VY++
Sbjct: 504 ICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVD 563
Query: 344 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 403
++I MLP+LL ++ SL P V+R AFS W+++ +++ ++VI S SY AQ
Sbjct: 564 KRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQ 623
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 463
ID D + + L +G ++ L ++SKILK KR +GAL L +
Sbjct: 624 ARID---DQKMQDPLTQG----------------MRVLLKLSKILKQKRMDEGALNLASP 664
Query: 464 KPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAP- 521
+ D E P D + + N L EEFMLLAN + A+ I AFP +A+LRRH AP
Sbjct: 665 EVRIQTDNETSDPMDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPP 724
Query: 522 --NMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQ 578
N L++ C L+ DTS S +SL++ + K+ Y F+ L+ TR M
Sbjct: 725 LTNFDSLQDILRVCKGMHLKCDTSKS--LAKSLDECVDP-KEPY--FNTLLRILTTRCML 779
Query: 579 LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKL 632
A YFCSG F D+ HY LA P+YTHFTSP+RRY D++ HR L AA++ E +
Sbjct: 780 SAEYFCSGTFA-PPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETI 832
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 196/660 (29%), Positives = 318/660 (48%), Gaps = 94/660 (14%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
PTGRVV I++R+ RD +V + + S+K I + P
Sbjct: 324 PTGRVVEILQRN-WRDYVVTLPPFEEMQSQSRNSQK----------------ILVVPWDY 366
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
+ PK I+ ++ +A ++ + V R+D W S +P H + V G+ GE+
Sbjct: 367 RIPK-----------IRISTQQAEA-LQDQRVIVRLDSWESTSVYPNGHFVRVLGKSGEL 414
Query: 236 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPS 290
E +I IL EN I FS L +P PW++ E+ SR+DLR+ +F+IDP
Sbjct: 415 ETEIQTILVENCIHVPPFSEAQLREMPVNTEENPWQMDSNEVSSRRDLRDSHLVFSIDPK 474
Query: 291 TATDLDDALSIERLSDGIS-RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPML 349
D+DD LS+ L G +GVHIADV++FV G+ D+EA+ R+T+ Y+ R+ ML
Sbjct: 475 GCEDVDDTLSVRTLPGGKRLELGVHIADVTHFVREGSLTDLEARSRATTYYLADRRYDML 534
Query: 350 PVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDG 408
P +LS ++ SL GVDR A S+ W+L++ +V W GRT+IRS +L YE AQ +++G
Sbjct: 535 PAVLSADLCSLLGGVDRYAMSVLWELDAETLEVCSVWFGRTLIRSSYQLHYELAQSLLNG 594
Query: 409 -KFDVESSNTL-GEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPV 466
+ +V N L G Q + S++++++++L V++ L+ +R GAL LE +
Sbjct: 595 EEVEVPELNPLKGSQRDQ-----KMSELLQALETLTRVARHLRAQRDKGGALELEGVEVR 649
Query: 467 FLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKL 526
DE V +++ E M+ AN A I +FP ALLR HP P
Sbjct: 650 AQLDEEKNITALVPKQPLEVHETVAECMIYANHWVARKIQESFPHHALLRHHPPPKQEFF 709
Query: 527 REFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSG 586
HG +DT S+ SLE+A + D ++ +L AT+ M A YF +G
Sbjct: 710 NHLIDSAKAHGFSIDTRSNRALADSLERAVD--PRDPLVNRLLRMMATQAMSNALYFSTG 767
Query: 587 DFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHR 646
++ + HY LA YTHFTSP+RRY D++VHR L AA++ EK
Sbjct: 768 SCPEE-QYYHYGLALARYTHFTSPIRRYADVIVHRLLMAAVQLEK--------------- 811
Query: 647 EGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVK 706
D+ +++L C L +A H N++ A ++ +
Sbjct: 812 -------------DESPSKAL---------------ACNKELEELAQHINNKNRAAQHSQ 843
Query: 707 DACVKLYMWILLKKK-----EVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIV 761
++L+ + + K E +++A + A+ ++ + ++ +Y + EG ++
Sbjct: 844 KQSIELFQCMYFRDKDSHTDERCVADAVIYAVRANGFLAFVPQYGLKGAVYLKDREGQVI 903
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 259 bits (661), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 235/444 (52%), Gaps = 27/444 (6%)
Query: 194 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 252
R+E A T+ + + ID W +S +P H + G G E + +L E+ I +
Sbjct: 393 RIETEQAETLSQQRIVVAIDHWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAP 452
Query: 253 FSPESLSCLPCVPWEVPQEE---LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGIS 309
FS L CLP WE E L R DLR+ I ++DP TD+DDAL +++ + +
Sbjct: 453 FSESVLDCLPREEWEPDLTENRGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLF 512
Query: 310 RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAF 369
VGVHIADV++FV PGTA+D EA +R T+VY+ R+I MLP LLS + SL +R AF
Sbjct: 513 EVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAF 572
Query: 370 SIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQF 429
S W + S+ D+ +++I+S L+YE AQ+IID P+
Sbjct: 573 SCIWTMTSSADIQSVKYHKSLIKSKAALTYEKAQEIIDD--------------PK----- 613
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNF 488
E +DV ++ L ++SK+L +R +GAL L +S+ F D E TP + D +
Sbjct: 614 EQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDWESRTPKKVMEKQHLDTHS 673
Query: 489 LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQF 548
+ EEFMLLAN + AE I +PD ALLRRHP P + G ++ S
Sbjct: 674 MVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESYKPLVEAARHRGFEIIVESGKGL 733
Query: 549 HQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 608
SL + + K + +L +L TR M A YF +G + H+ LA +YTHFT
Sbjct: 734 ADSLNRCVD--KKNPMLNRLLRMLTTRCMTQAVYFSAGTVP-VPQYQHFGLACAIYTHFT 790
Query: 609 SPLRRYPDLVVHRTLNAALEAEKL 632
SP+RRY D++VHR L AA+ A+ +
Sbjct: 791 SPIRRYADVIVHRLLAAAIGADDI 814
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 177/497 (35%), Positives = 259/497 (52%), Gaps = 50/497 (10%)
Query: 180 MVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQI 239
++++ K LP ++ R ++ +V + ID W +P H + G + +
Sbjct: 424 VILMDKCLP-KVRIRTRRAAELLDKRIVIS-IDSWPTTHKYPLGHFVRDLGTIESAQAET 481
Query: 240 NAILYENAICCSGFSPESLSCLPCV------------PWEVPQEELLS-RKDLRNFCIFT 286
A+L E+ + FS + L CLP P V ++ LL+ RKDLR+ I +
Sbjct: 482 EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICS 541
Query: 287 IDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKI 346
IDP D+DDAL ++L +G VGVHIADV++FV PGTALD E R TSVY++ ++I
Sbjct: 542 IDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRI 601
Query: 347 PMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDII 406
MLP+LL ++ SL P VDR AFS+ W+L+ + ++V+ ++VIRS SYE AQ I
Sbjct: 602 DMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI 661
Query: 407 DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK-P 465
D K ++ L G +++L ++S LK KR GAL L + +
Sbjct: 662 DDK---TQNDELTMG----------------MRALLKLSVKLKQKRLEAGALNLASPEVK 702
Query: 466 VFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAP---N 522
V + E P + + N L EEFMLLAN + A I AFP +A+LRRH AP N
Sbjct: 703 VHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTN 762
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQLAS 581
L E ++ + + SS SL++ + +D Y F+ L+ +TR M A
Sbjct: 763 FEILNEM--LNTRKNMSISLESSKALADSLDRCVDP-EDPY--FNTLVRIMSTRCMMAAQ 817
Query: 582 YFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR---- 637
YF SG + D+ HY LA +YTHFTSP+RRY D+V HR L A+ E L HR
Sbjct: 818 YFYSGAYS-YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNK 876
Query: 638 -RMLPKNNHREGVRGRF 653
M+ +N +R+ +F
Sbjct: 877 MDMICRNINRKHRNAQF 893
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/579 (28%), Positives = 268/579 (46%), Gaps = 78/579 (13%)
Query: 70 EGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPR 129
+G+ ++ S SD + ++ N MN + + S R G V+ I+ER+ +
Sbjct: 81 KGFAFLLPEDTSLSDVF--IPPNELNTAMNGDIVMVRLNSQSSGSRQEGTVIRILERAIQ 138
Query: 130 RDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPD 189
R +VG + F + +PD + I PK K
Sbjct: 139 R--VVGTYTETRNFGF---------------VIPDDKKITSDIFIPKNGK---------- 171
Query: 190 SIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAIC 249
+ E V ++ + E + V + G + I ++++++ +
Sbjct: 172 ---------NGAAEGHKVVVKLTSYPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLP 222
Query: 250 CSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGIS 309
F +++ P + +++L R+DLR+ I TID + A DLDDA+++ +L DG
Sbjct: 223 GE-FPADAMEQASSTPDTIDEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSY 281
Query: 310 RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAF 369
++GVHIADVS++V + +D EA R TSVY++ R IPM+P LS + SLNP VDRL
Sbjct: 282 KLGVHIADVSHYVTENSPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTL 341
Query: 370 SIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQF 429
S +NS G V + I ++VI++ +++Y I+ V+ L + + L F
Sbjct: 342 SCEMTINSQGQVTEHEIFQSVIKTTERMTYSDVNKIL-----VDDDEELKQKYEPLVPMF 396
Query: 430 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFL 489
K + +++IL+DKR GA+ + + L D+ G D V+ R L
Sbjct: 397 ---------KDMERLAQILRDKRMDRGAVDFDFKEAKVLVDDEGAVKDVVIRERSVAEKL 447
Query: 490 FEEFMLLANKTAAEVIA-RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQF 548
EEFML+AN+T AE P + R H PN KL++F F + G + ++G
Sbjct: 448 IEEFMLVANETVAEHFHWMNVP--FIYRIHEEPNAEKLQKFLEFVTTFGYVV-KGTAGNI 504
Query: 549 H----QSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVY 604
H QS+ A ++ V+ +++ R M+ A Y D GH+ L+ Y
Sbjct: 505 HPRALQSILDAVRDRPEETVISTVML----RSMKQAKY-------DPQSLGHFGLSTEFY 553
Query: 605 THFTSPLRRYPDLVVHRTLNAAL------EAEKLYWKHR 637
THFTSP+RRYPDL+VHR + L EA + W R
Sbjct: 554 THFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAER 592
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 199/379 (52%), Gaps = 32/379 (8%)
Query: 249 CCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGI 308
S F E L VP EVP+ E++ R D RN FTID + A DLDDA+ +RL +G
Sbjct: 232 IVSEFPKEVLDQAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGN 291
Query: 309 SRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLA 368
+GVHIADVS++V + LD EA R TSVY+ R +PMLP LS + SLNP ++RL
Sbjct: 292 YELGVHIADVSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLT 351
Query: 369 FSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQ 428
S +++ G V++ I +++I++ +++Y+ +I G E + Y +
Sbjct: 352 QSCVMEISPEGRVINYQISQSIIKTTERMTYDAVNQMIAGD----------EAALENYAK 401
Query: 429 FEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNF 488
+ S+K + E+ IL+ R GA+ + + + +E G P + R
Sbjct: 402 -----IADSVKIMVELHHILEAMRKRRGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAER 456
Query: 489 LFEEFMLLANKT-AAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ 547
+ E FML AN+T A A P + R H P +L+ F F + G+Q++ +S+G
Sbjct: 457 MIESFMLEANETVATHFEAHGLP--FIYRIHEQPKADRLQRFIDFAATFGMQIEGTSNGI 514
Query: 548 FHQSLEQAREKLK---DDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVY 604
+ L+ +K+K + VL +L+ R MQ A Y + + GH+ LA Y
Sbjct: 515 DQKVLQAFMKKIKGQPGEMVLSTMLL----RSMQQARY-------SENNEGHFGLAAENY 563
Query: 605 THFTSPLRRYPDLVVHRTL 623
THFTSP+RRYPDL+VHR +
Sbjct: 564 THFTSPIRRYPDLLVHRLI 582
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 260/536 (48%), Gaps = 73/536 (13%)
Query: 116 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
P GRVV ++ER +R +VG F++KG VPD
Sbjct: 121 PRGRVVRVLERGLKR--VVGV------FDHKGTF---------GFVVPDD---------- 153
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
PK+ P++I D + V A I ++ P+A V+ V G +
Sbjct: 154 --PKIAYDFYVAPENI-------DGAKPNQKVIAEILKYPSPGKNPEAKVVKVLGDLDDP 204
Query: 236 EPQINAILYENAICCSG-FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATD 294
+ +++ ++ + G F E + +P V +++L+ RKDLR+ I TID A D
Sbjct: 205 SIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGRKDLRDKVIVTIDGEDAKD 264
Query: 295 LDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLS 354
DDA+S+E+L +G +GVHIADVS++V G+ALD EA R TSVY++ IPMLP LS
Sbjct: 265 FDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSVYLIDTVIPMLPFRLS 324
Query: 355 EEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVES 414
+ SL G DRL S+ +++ G VV + +VI+S ++ YE + + E
Sbjct: 325 NGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKRMIYERVNEFL------ED 378
Query: 415 SNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGA-LRLENSKPVFLFDEYG 473
+++ E P + D+ I + E+++IL++ R GA L +E+ + + DE G
Sbjct: 379 PSSMKEYEP-------FKDL---IYNAVELAEILREARRKRGAILDIESDEVKVILDENG 428
Query: 474 TPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA-FPDSALLRRHPAPNMRKLREFEAF 532
D V R L EEFM+ AN+T AE+ A P + R H P+ + + + +
Sbjct: 429 QVVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLP--FMYRVHEEPDPETIFQLKNY 486
Query: 533 CSKHGLQLDTSSSGQFHQS-LEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDD 591
G++ S + H L++ EK+K D+ L + R M+ A Y
Sbjct: 487 LEAMGIR--AKFSHKIHPGMLQKLLEKVK-DHPLRSSVERLLVRSMKRAMYSA------- 536
Query: 592 TDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYW-----KHRRMLPK 642
+ GH+ LA YTHFTSP+RRYPDLVVHR L LE + K ++LPK
Sbjct: 537 VNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFSKVLPK 592
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 178/365 (48%), Gaps = 38/365 (10%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+ L SRKDLR+ FTID S+A D DDA+S+ +G +GVHIADVS++V P +ALD
Sbjct: 199 QALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDR 258
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTV 390
EA R S+Y + IPMLP LS+ + SL P VDRLA S+F + G + D I R+V
Sbjct: 259 EAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSV 318
Query: 391 IRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKD 450
IRS +++Y+ +II+ K + + ++I + E+S+I D
Sbjct: 319 IRSKYRMTYDEVDEIIEKK--------------------QTHPISKTILKMAELSRIFSD 358
Query: 451 KRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFP 510
R G RL D P + + + + L EEFML AN EVIA
Sbjct: 359 IREQRGCTRLVLPSFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKAN----EVIAYHIS 414
Query: 511 DSAL---LRRHPAPNMRKLREFEAFCSKHGLQL-DTSSSGQFHQSLEQAREKLKDDYVLF 566
+ R H PN L F+ G + T + +Q L Q + + L
Sbjct: 415 HQGITMPFRTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQ---ETTAGHPLE 471
Query: 567 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 626
IL + R M+ ASY + GHY L YTHFTSP+RRY DL+VHR L
Sbjct: 472 PILHSQFVRSMKTASY-------STENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHP 524
Query: 627 LEAEK 631
L E+
Sbjct: 525 LSVEE 529
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 176/365 (48%), Gaps = 38/365 (10%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+ L SRKDLR+ FTID ++A D DDA+S+ +G +GVHIADVS++V P +ALD
Sbjct: 199 QALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDQ 258
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTV 390
EA R S+Y + IPMLP LS+ + SL P VDRLA S+F + G + D I R+V
Sbjct: 259 EAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSV 318
Query: 391 IRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKD 450
IRS +++Y+ +II+ K S T+ E + E+S+I D
Sbjct: 319 IRSKYRMTYDEVDEIIEKKLAHPISKTILE--------------------MAELSRIFSD 358
Query: 451 KRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFP 510
R G RL D P V + + + L EEFML AN EVIA
Sbjct: 359 IREQRGCTRLVLPSFTMSLDNLQEPVALVENKQTAAHKLIEEFMLKAN----EVIAYHIS 414
Query: 511 DSAL---LRRHPAPNMRKLREFEAFCSKHGLQL-DTSSSGQFHQSLEQAREKLKDDYVLF 566
+ R H PN L F G + T + +Q L Q + + L
Sbjct: 415 HQGITMPFRIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQ---ETSAGHPLE 471
Query: 567 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 626
IL + R M+ ASY + GHY L YTHFTSP+RRY DL+VHR L
Sbjct: 472 PILHSQFVRSMKTASY-------STENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHP 524
Query: 627 LEAEK 631
L E+
Sbjct: 525 LSVEE 529
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 212/423 (50%), Gaps = 27/423 (6%)
Query: 203 EMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP 262
E ++V+ +I ++ + + + + G GEV I +L I FS E+L+
Sbjct: 130 EEDVVSLKITQYPTNTKTFEGKITGIIGHKGEVGLDILEVLCAMKIPQE-FSSETLAEAE 188
Query: 263 CVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFV 322
++ +L R+D RN +TID + DLDDA+ +++LS+ +GVHIADVS++V
Sbjct: 189 AFSEKLTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWHFELGVHIADVSHYV 248
Query: 323 LPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVV 382
G++LD EA R+TSVY+ R +PMLPV LS + SLN +RL S +++ G +V
Sbjct: 249 TEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQERLTMSCLMEIDDKGKIV 308
Query: 383 DRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLY 442
I +VI++ +++Y + +I + EG + F + SIK
Sbjct: 309 SYKISPSVIKTTYRMTYNNVNKMI---------HQGQEGHREALENF--FKITDSIKVAV 357
Query: 443 EVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAA 502
E+ +IL+ R G + + S+ + DE G P + V R+ + E FML+AN+T A
Sbjct: 358 ELHEILETMRKDRGMIEFDESEAKIILDEKGHPIEIVKRDRDTAERMIESFMLMANETVA 417
Query: 503 -EVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKD 561
+ + P +L R H P + + + G L++ S HQ++ +++K
Sbjct: 418 LDFQKKKLP--SLYRVHDNPKEKSFAKLMEAAANAGFSLNSDS----HQAINFFADEIKG 471
Query: 562 DYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHR 621
+ + Y R + + + K H+ LA YTHFTSP+RRYPDL++HR
Sbjct: 472 --TSSEKALTYQLRHTMSTAVYSEKNTK------HFGLAATNYTHFTSPIRRYPDLIIHR 523
Query: 622 TLN 624
L+
Sbjct: 524 LLH 526
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 188/421 (44%), Gaps = 33/421 (7%)
Query: 216 EESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLS 275
+E P +L G + AI E + F PE + + + L S
Sbjct: 148 QEGASPALQMLEFIGHITNAKADFQAIQAEYNLA-EEFPPEVIEEASLFSQKHITQVLHS 206
Query: 276 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 335
RKDLR+ FTID STA D DDA+S+ + +GVHIADVS++V P + LD EA R
Sbjct: 207 RKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADVSHYVTPHSHLDKEAAKR 266
Query: 336 STSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCC 395
S Y + IPMLP LS+ + SL P VDRLA S+F +G + D I R+VIRS
Sbjct: 267 CNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKSGHLSDYQIFRSVIRSKY 326
Query: 396 KLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTD 455
+++Y+ +II+ K S L E + +SK D R
Sbjct: 327 RMTYDEVDNIIEKKHSHPLSKILNE--------------------MATLSKKFSDIREER 366
Query: 456 GALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALL 515
G +R D P + + + + L EEFML AN+ A I+ S
Sbjct: 367 GCIRFVLPSVTMSLDNLQEPVALIENHQTFSHKLIEEFMLKANEVVAYHISHQ-GVSLPF 425
Query: 516 RRHPAPNMRKLREFEAFCSKHGLQLD-TSSSGQFHQSLEQAREKLKDDYVLFDILINYAT 574
R H PN L F+ G + T + +Q L Q + L +L +
Sbjct: 426 RSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSA---GHPLEQVLHSQFV 482
Query: 575 RPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYW 634
R M+ ASY + GHY L YTHFTSP+RRY DL+VHR L L ++ +
Sbjct: 483 RSMKTASY-------STENKGHYGLKLDYYTHFTSPIRRYIDLIVHRLLFNPLSIDQTHL 535
Query: 635 K 635
+
Sbjct: 536 E 536
>sp|P21499|RNR_ECOLI Ribonuclease R OS=Escherichia coli (strain K12) GN=rnr PE=1 SV=2
Length = 813
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 185/368 (50%), Gaps = 31/368 (8%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EVP+E R DLR+ + TID A D DDA+ E+ G R+ V IADVSY+V P T
Sbjct: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
LD EA+ R TSVY + IPMLP +LS + SLNP VDRL ++S G +
Sbjct: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y I+ G D+ +++ +V+ ++ L+ + K
Sbjct: 371 YEAVMSSHARLTYTKVWHILQGDQDLRE---------------QYAPLVKHLEELHNLYK 415
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 506
+L R G + E+ + F+F+ + R D + L EE M+LAN +AA +
Sbjct: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ---FHQSLEQAREKLKDDY 563
+A + AL R H P+ + F + ++ GL+L + + + + LE ++ D
Sbjct: 476 KA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR-PDAE 533
Query: 564 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 623
+L +L+ R M+ A Y D + GH+ LA Y HFTSP+RRYPDL +HR +
Sbjct: 534 MLQTMLL----RSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582
Query: 624 NAALEAEK 631
L E+
Sbjct: 583 KYLLAKEQ 590
>sp|P30851|RNR_SHIFL Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4
Length = 813
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 185/368 (50%), Gaps = 31/368 (8%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EVP+E R DLR+ + TID A D DDA+ E+ G R+ V IADVSY+V P T
Sbjct: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPT 310
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
LD EA+ R TSVY + IPMLP +LS + SLNP VDRL ++S G +
Sbjct: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y I+ G D+ +++ +V+ ++ L+ + K
Sbjct: 371 YEAVMSSHARLTYTKVWHILQGDQDLRE---------------QYAPLVKHLEELHNLYK 415
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 506
+L R G + E+ + F+F+ + R D + L EE M+LAN +AA +
Sbjct: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ---FHQSLEQAREKLKDDY 563
+A + AL R H P+ + F + ++ GL+L + + + + LE ++ D
Sbjct: 476 KA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR-PDAE 533
Query: 564 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 623
+L +L+ R M+ A Y D + GH+ LA Y HFTSP+RRYPDL +HR +
Sbjct: 534 MLQTMLL----RSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582
Query: 624 NAALEAEK 631
L E+
Sbjct: 583 KYLLAKEQ 590
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 203/411 (49%), Gaps = 35/411 (8%)
Query: 223 AHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNF 282
A ++H+ G +V + +I+Y+N I + F P+ + + + V + + R+ + +
Sbjct: 197 AELVHIIGHKNDVGSDVLSIVYDNGIDPT-FDPQVVDLASKLEFYVDEHQNKIRRSIIDR 255
Query: 283 CIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYML 342
I +IDP + D+DDA+ +++L+D +G+ IADVS++V P T LD +A R TS Y++
Sbjct: 256 EIISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTILDADAFKRGTSTYLV 315
Query: 343 QRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHA 402
R IPMLP +S + SLN G R+ + ++ G + + + ++++ ++SY+
Sbjct: 316 DRVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKDVYPAIMKNYRQMSYDEV 375
Query: 403 QDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLEN 462
D +GK ES+ TL L + E+ IL++K+ DG + +
Sbjct: 376 NDFYEGKSRFESA-TLTMKEMLLEAK--------------ELHHILRNKKIKDGYVDFDI 420
Query: 463 SKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSAL-------- 514
+P + DE G P D + R+ + E+FM+ AN+ A + A D L
Sbjct: 421 KEPKIILDETGVPIDIKIYERKTAQMMVEDFMIAANE-AVTMFAEEHMDKTLKEFNLEMP 479
Query: 515 --LRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINY 572
R H P++ L++FE K + ++ K+ D++V ++
Sbjct: 480 FIYRVHDKPSIINLQKFEIEAKKLSFNISHDFENIQPNTISNWL-KMNDNHVNLPLISKL 538
Query: 573 ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 623
R M ASY + + GH+ LA YTHFTSP+RRYPDL+VHR L
Sbjct: 539 LLRSMAKASY-------EIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLL 582
>sp|P40611|RNR_VIBPA Ribonuclease R OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnr PE=3 SV=2
Length = 835
Score = 170 bits (431), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 181/366 (49%), Gaps = 27/366 (7%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EVP+E + R DLR + TID A D DDA+ E+ DG R+ V IADVSY+V P +
Sbjct: 258 EVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWVAIADVSYYVRPDS 317
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
ALD EA R SVY + +PMLP +LS + SLNP VDRL ++ +G +
Sbjct: 318 ALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISESGKLSSYKH 377
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y I++G ++ + +V ++ L+ + K
Sbjct: 378 YEAVMNSHARLTYSKVSAILEGDEELRE---------------RYQPLVSHLEELHAMYK 422
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 506
+LK+ R GA+ E + F+F+ R D + + EE M+LAN +A ++
Sbjct: 423 VLKEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLVE 482
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKL-KDDYVL 565
+A + AL R H +P +L+ F F S+ GL+L + AR+ + D L
Sbjct: 483 KA-KEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQEL 541
Query: 566 FDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNA 625
++ R M+ A Y + GH+ LA Y HFTSP+RRYPDL++HR +
Sbjct: 542 IQTML---LRSMKQAVYNAD-------NAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKY 591
Query: 626 ALEAEK 631
+ E+
Sbjct: 592 LIAKEE 597
>sp|P44907|RNR_HAEIN Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnr PE=3 SV=1
Length = 782
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 178/368 (48%), Gaps = 32/368 (8%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EV +E R DLRN + TID A D DDA+ E+ G ++ V IADVSY+V +
Sbjct: 259 EVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKGW-KLWVAIADVSYYVRLRS 317
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
LD+EA R SVY R +PMLP +LS + SLNP VDRL +++ G + D
Sbjct: 318 TLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQISAKGKLTDYRF 377
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y +++G ++ + +S +V ++ LY++ +
Sbjct: 378 YEAVMNSHARLTYTKVAKMLEGDEELRT---------------RYSTLVPHLEELYKLYQ 422
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 506
L R GA+ E + F+F+ G R D + EE M LAN AA +
Sbjct: 423 ALLSARHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFME 482
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQSLEQAREKLKDDY 563
+ + AL R H P+ KL F F S+ GL L+ ++ + LE+ +E + D+
Sbjct: 483 K-HKEPALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKE--RPDH 539
Query: 564 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 623
L ++ R + A Y + GH+ LA Y HFTSP+RRYPDL +HR +
Sbjct: 540 ELIQTML---LRSLSQAVYHAD-------NIGHFGLALEEYAHFTSPIRRYPDLTLHRGI 589
Query: 624 NAALEAEK 631
L E+
Sbjct: 590 KYLLAKEQ 597
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 182/364 (50%), Gaps = 33/364 (9%)
Query: 276 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 335
R+DLR FTIDP A D DDA++IE +G ++ VHIADVSY+V GT D EA R
Sbjct: 240 RRDLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKR 299
Query: 336 STSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCC 395
+ Y R + MLP LS ++ SL P D+LAF++ + +G++ I +VIRS
Sbjct: 300 GFTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKA 359
Query: 396 KLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTD 455
+L+Y A +I G L + +P L + +R +++LY +IL KR+
Sbjct: 360 RLTYNEALALIVG------DPALEKKFPNL------VEPLRMMETLY---RILSRKRWEM 404
Query: 456 GALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA-FPDSAL 514
G++ + + + DEYG P R + + E FM+ AN+T A + A +P L
Sbjct: 405 GSIDFDLPEAEVIVDEYGEPTAIYPYERHVAHRIIEHFMISANETVALHLEHAGYP--CL 462
Query: 515 LRRHPAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQSLEQAREKLKDDYVLFDILIN 571
R H P+ K+ G ++ + F + +E + +++ V F L
Sbjct: 463 YRVHEPPDEEKVENLLEILEGLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTL-- 520
Query: 572 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
R M A Y + GH+ LA Y HFTSP+RRYPD++VHR L AL E+
Sbjct: 521 ---RAMARAKY-------SPHNVGHFGLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEE 570
Query: 632 LYWK 635
+ ++
Sbjct: 571 IDYE 574
>sp|Q98QL0|RNR_MYCPU Ribonuclease R OS=Mycoplasma pulmonis (strain UAB CTIP) GN=rnr PE=3
SV=1
Length = 725
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 199/413 (48%), Gaps = 45/413 (10%)
Query: 238 QINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDD 297
QI+ +L E + F + L + V +++ +RKDLR+ I TID D DD
Sbjct: 199 QIDIVL-EKSKTIIDFPEDVLDESALIEDHVIEKDYQNRKDLRDKLIITIDGEDTKDFDD 257
Query: 298 ALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEV 357
A+ +E+ D + VHIADV+++V +A+D EA R+TS+Y+ IPMLP LS +
Sbjct: 258 AIYVEKNKDHF-LLSVHIADVAHYVKENSAIDKEALRRATSIYLPHMVIPMLPEKLSNGI 316
Query: 358 GSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNT 417
SLNPGVDRL SI ++ G+ + + +I S +L+Y D + K ++
Sbjct: 317 CSLNPGVDRLVMSIDIFIDFQGNTIKTELYEGIINSKHRLTYNQVNDFYNNKIKLD---- 372
Query: 418 LGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYD 477
P L S E+SKIL++ + +G + LE + + D+ G
Sbjct: 373 -----PNLEKMLNDS---------LELSKILENYKKDEGYINLEIEESKVILDKEGKTVG 418
Query: 478 SVLSGREDLNFLFEEFMLLANKTAAEVIAR-AFPDSALLRRHPAPNMRKLREFEAFCSKH 536
+ R L E FM+ AN+ A + + P ++ R H P++ L FE
Sbjct: 419 IKVIQRGLSEVLIENFMVRANEAVAWKMNKLKLP--SIYRVHDNPSIESLVLFEKTLKTL 476
Query: 537 GLQLDT---SSSGQFHQSLEQAREKLK-DDYVLFDILINYATRPMQLASYFCSGDFKDDT 592
G+ DT +S F S E+ ++ + D++V +L R M+ A Y D
Sbjct: 477 GIDFDTPKITSPKAFSDSFEKIKQNYQIDNFVKLMVL-----RTMEKAIY-------SDK 524
Query: 593 DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNH 645
+ GH+ LA Y+HFTSP+RRYPDL +HR + +++ + + K NH
Sbjct: 525 NIGHFGLASSYYSHFTSPIRRYPDLQLHRLI------KQMVFDKSNLKEKKNH 571
>sp|Q9KNY1|RNR_VIBCH Ribonuclease R OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rnr PE=3 SV=1
Length = 821
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 175/361 (48%), Gaps = 31/361 (8%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 326
EVP+E R DLR + TID A D DDA+ E G R+ V IADVSY+V P T
Sbjct: 258 EVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDT 317
Query: 327 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 386
ALD EA R SVY + +PMLP +LS + SLNP VDRL ++ G +
Sbjct: 318 ALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKH 377
Query: 387 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 446
V+ S +L+Y +I++G ++ + +V ++ L+++ +
Sbjct: 378 YEAVMNSHARLTYTKVHEILEGDEELRE---------------RYKALVPHLEELHKMYQ 422
Query: 447 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 506
+LK R GA+ E + F+F+ R D + L EE M+LAN +A ++
Sbjct: 423 VLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVE 482
Query: 507 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQSLEQAREKLKDDY 563
+A ++AL R H P +L F F + GL L S + ++Q E+ +
Sbjct: 483 KA-KEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKEL 541
Query: 564 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 623
+ +L R M+ A Y + + GH+ LA Y HFTSP+RRYPDL++HR +
Sbjct: 542 IQTMLL-----RSMKQAVY-------NADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAI 589
Query: 624 N 624
Sbjct: 590 K 590
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 203/433 (46%), Gaps = 38/433 (8%)
Query: 206 LVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVP 265
+V ++ E + Q ++ V G+ I L + I +S E L +
Sbjct: 193 IVVVKLRENATKKSKIQGTIVEVLGKEMGTNLAIKIALRTHCIP-YLWSKEVEYQLCGIK 251
Query: 266 WEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGIS--RVGVHIADVSYFVL 323
++ +++ +R DLR+ FTID A D DDA+ ++ ++G ++ V I+DVSY++
Sbjct: 252 SKINEKDFKNRIDLRHLPFFTIDEEDARDFDDAIFCKKKTNGEKGWKLWVAISDVSYYIQ 311
Query: 324 PGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD 383
P TALD A R TS+Y IPMLP +S +V SLNP +RL+ +L++ G+++
Sbjct: 312 PDTALDKAASKRGTSIYFPSLVIPMLPEKISIDVCSLNPNAERLSLICEMNLSNKGELI- 370
Query: 384 RWIGRTVIRSCCKLSYEHAQDII--DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSL 441
+Y+H + +I G+F + G +L F++ +++ I++L
Sbjct: 371 --------------TYKHYEAVICSHGRFTYNEIFKIWNGDIELC--FKYKKLLKYIQNL 414
Query: 442 YEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTA 501
+ KILK + + EN + F+ D + + R D + E M+LAN +
Sbjct: 415 SSLQKILKKYNVSKRGIYFENIEAKFILDSNYRIKNISQNIRNDAHKFIESCMILANIAS 474
Query: 502 AEVIARAFPDSALLRRHPAPNMRKLREFEAF---CSKHGLQLDTSSSGQFHQSLEQAREK 558
AE + + L R H P+ + F + L + S + + L++
Sbjct: 475 AEFVKKH-KSPVLFRNHDRPDKDSIINFRSVLKKLGLSLLGGEIPESTDYSELLKKIST- 532
Query: 559 LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 618
+ DY + ++ R M+ A Y S D + GH+ L+ Y HFTSP+RRYPDL+
Sbjct: 533 -RPDYEMIQTIL---LRSMKQAVY--SPD-----NRGHFGLSLSSYVHFTSPIRRYPDLL 581
Query: 619 VHRTLNAALEAEK 631
VHR + L EK
Sbjct: 582 VHRVIKNLLLKEK 594
>sp|P47350|RNR_MYCGE Ribonuclease R OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=rnr PE=3 SV=1
Length = 725
Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 117/447 (26%), Positives = 206/447 (46%), Gaps = 53/447 (11%)
Query: 188 PDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENA 247
PDSI L +A +IDE++ ++ + V V G + I AI+ +N+
Sbjct: 183 PDSIPNNLASNTK------IAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNS 236
Query: 248 IC--CSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLS 305
I + + + L ++ ++ R+DL + T+DP+T+ DLDDA+ ++ +
Sbjct: 237 IVFETNDVVEQHANKLS---FDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIP 293
Query: 306 DGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYML-QRKIPMLPVLLSEEVGSLNPGV 364
G + V IADV+++V + +DIEA+ +++S+Y+ +PMLP LS ++ SLNP
Sbjct: 294 TGFV-LYVAIADVAHYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQ 352
Query: 365 DRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQ 424
R ++ G + + I S + SY+ ++ K ++ T
Sbjct: 353 KRYVVVCEISFDNQGRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDET------- 405
Query: 425 LYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGRE 484
V+ S+K+ + +S +++ +R G + L + + + DE+ P +
Sbjct: 406 ---------VINSLKAAFTLSDLIQAQRQKRGTIDLSHKETEIVVDEHYFPIKINFLVHD 456
Query: 485 DLNFLFEEFMLLANKTAAEVIAR---AFPDSALLRRHPAPNMRKLREF-----EAFCSKH 536
+ E M++AN+T A V+ A P R HP P+ +KL+ E +K
Sbjct: 457 KAETMIENLMVVANETVAWVLTNNKIALP----YRVHPRPSKKKLQSLIETVGELNITKP 512
Query: 537 GLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGH 596
LDT +S Q L + ++ Y +F IL+ R + A Y + H
Sbjct: 513 QFNLDTVTSSQIASWLNENKDN--PSYEIFVILL---LRTLGKAFYSVNP-------LMH 560
Query: 597 YALAFPVYTHFTSPLRRYPDLVVHRTL 623
+++ YTHFTSP+RRY DL +HR L
Sbjct: 561 FSIGSNHYTHFTSPIRRYIDLTIHRLL 587
>sp|P24276|SSD1_YEAST Protein SSD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSD1 PE=1 SV=1
Length = 1250
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 167/672 (24%), Positives = 268/672 (39%), Gaps = 115/672 (17%)
Query: 118 GRVVSIIERSPRR--DGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 175
G VV++++R P + G +G L +Q N + K PT
Sbjct: 541 GHVVAVLDRIPGQLFSGTLGLLRPSQQANSDNNKPPQSPK-----------IAWFKPTDK 589
Query: 176 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 235
K P + + + P K +E D E +L A I W S P ++ G +
Sbjct: 590 KVPLIAIPTELAP---KDFVENADKYSE-KLFVASIKRWPITSLHPFGILVSELGDIHDP 645
Query: 236 EPQINAILYENAICCSGF----SPE----SLSCLPCVPWEVPQEELLSRK---DLRNFCI 284
+ +I++IL +N + + +P+ S LP E L R+ D + I
Sbjct: 646 DTEIDSILRDNNFLSNEYLDQKNPQKEKPSFQPLPLT-----AESLEYRRNFTDTNEYNI 700
Query: 285 FTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQR 344
F I + AL + +G +G H+ DV+ + G+++D A+ RS++V+M Q+
Sbjct: 701 FAISELGWVS-EFALHVRNNGNGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQK 759
Query: 345 KIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQ 403
+ +LP ++E+ SL PG + S+ + L+S+ + W+G + I LS E
Sbjct: 760 LVNLLPQSFNDEL-SLAPGKESATLSVVYTLDSSTLRIKSTWVGESTISPSNILSLEQ-- 816
Query: 404 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDG-ALRLEN 462
+D K L G P Y + ++ E+++ +R D A L
Sbjct: 817 --LDEK--------LSTGSPTSY-----------LSTVQEIARSFYARRINDPEATLLPT 855
Query: 463 SKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPN 522
+ D+ D + R + E N T AE I D ALLRR P
Sbjct: 856 LSLLESLDDEKVKVDLNILDRTLGFVVINEIKRKVNSTVAEKIYTKLGDLALLRRQMQPI 915
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASY 582
K+ F G DT+++ + L + K+KDD V I I + M A Y
Sbjct: 916 ATKMASFRKKIQNFGYNFDTNTADE----LIKGVLKIKDDDVRVGIEI-LLFKTMPRARY 970
Query: 583 FCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPK 642
F +G D +GHYAL P+YTHFT+P+RRY D VVHR L A
Sbjct: 971 FIAGKVDPD-QYGHYALNLPIYTHFTAPMRRYADHVVHRQLKA----------------- 1012
Query: 643 NNHREGVRGRFLTGIFYDKDAAESLEGREALSVAA--LKYGVPCADILVNVATHCNDRKL 700
+ +D E + EAL + + + CA A H L
Sbjct: 1013 --------------VIHDTPYTEDM---EALKITSEYCNFKKDCAYQAQEQAIHL----L 1051
Query: 701 ACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLI 760
C+ + D + LL+ A VL + ++I + IE+R++ D++ +
Sbjct: 1052 LCKTIND---------MGNTTGQLLTMATVLQVYESSFDVFIPEFGIEKRVHGDQLPLIK 1102
Query: 761 VEWLETTSTLVL 772
E+ T L L
Sbjct: 1103 AEFDGTNRVLEL 1114
>sp|P75529|RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=rnr PE=3 SV=1
Length = 726
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 195/428 (45%), Gaps = 46/428 (10%)
Query: 207 VAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPW 266
VA +IDE++ + + + + G E + AI+ +++I F +
Sbjct: 196 VAFQIDEYDPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIV---FEDNDVVEQQAAKL 252
Query: 267 EVPQEELLS--RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLP 324
+ ++E RKDL TIDP+T+ DLDDA+ ++R G + V IADV+Y+V
Sbjct: 253 QFDEKEQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDKGFV-LYVAIADVAYYVQR 311
Query: 325 GTALDIEAQVRSTSVYML-QRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD 383
+ LDIEA+ +++S+Y+ +PMLP LS E+ SLNP R + + +
Sbjct: 312 NSELDIEARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNF 371
Query: 384 RWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 443
+ I S + +Y D + E S+ L + E + V+ S+K+ +
Sbjct: 372 SEVYPATIVSQRRFAYSEVNDWL------EDSDALKD---------ESATVLESLKAGFT 416
Query: 444 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAE 503
+S+++ ++R G + L +S+ + D+ P + + E M++AN+ A
Sbjct: 417 LSELIAEQRKKKGTIDLSHSETEVVVDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAW 476
Query: 504 VIARA---FPDSALLRRHPAPNMRKLREF-----EAFCSKHGLQLDTSSSGQFHQSLEQA 555
+ P R HP P+ +KL+ E ++ LDT +S Q L++
Sbjct: 477 TLTNHKVHLP----YRVHPRPSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKEN 532
Query: 556 REKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYP 615
+ D +DI + R + A Y + H+++ YTHFTSP+RRY
Sbjct: 533 K-----DNPSYDIFVILLLRTLGKAFYIVNP-------LIHFSIGSHHYTHFTSPIRRYA 580
Query: 616 DLVVHRTL 623
DL VHR L
Sbjct: 581 DLTVHRLL 588
>sp|P57628|RNR_BUCAI Ribonuclease R OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnr PE=3 SV=2
Length = 731
Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 174/373 (46%), Gaps = 39/373 (10%)
Query: 267 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISR--VGVHIADVSYFVLP 324
++ Q + +R DLR+F FTID A D DDA+ +R ++ + V IADVS +V P
Sbjct: 251 KINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILWVAIADVSCYVQP 310
Query: 325 GTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 384
T LD A R TSVY IPMLP +S ++ SL P V+RL L+ G+++
Sbjct: 311 NTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMSLSKQGELI-- 368
Query: 385 WIGRTVIRSCCKLSYEHAQDII--DGKFDVESSNTLGEGWP-QLYGQFEWSDVVRSIKSL 441
SY+H + II G+F + N + + W ++ + ++ ++ I++L
Sbjct: 369 -------------SYKHYEGIICSHGRF---TYNEIFKIWNGDIFLRSKYKKFLKDIENL 412
Query: 442 YEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTA 501
+ I + + EN +P F+ D + R D + E M+LAN +
Sbjct: 413 SCLQNIFNKDNISKKGIYFENIEPKFVLDSNLRIKSIYQNIRNDAHKFIESCMILANVAS 472
Query: 502 AEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL---DTSSSGQFHQSLEQAREK 558
A + + + L R H P + F ++ G L D+ S + L+ ++
Sbjct: 473 ARFVEK-YKYPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDR 531
Query: 559 LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 618
+ ++++ R M A Y S D + GH+ L+ Y HFTSP+RRYPDL+
Sbjct: 532 PE-----YEMIQTVLLRSMTQAVY--SPD-----NRGHFGLSLSSYVHFTSPIRRYPDLI 579
Query: 619 VHRTLNAALEAEK 631
+HR + L +K
Sbjct: 580 LHRVIKYLLFKDK 592
>sp|O94525|YBU1_SCHPO Uncharacterized ribonuclease C609.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC609.01 PE=3 SV=1
Length = 1157
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 143/594 (24%), Positives = 236/594 (39%), Gaps = 114/594 (19%)
Query: 179 KMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQ 238
K + L+ D + + + ++ A I W S P + G G+ + +
Sbjct: 508 KRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLHPFGTLYESIGTIGDPKVE 567
Query: 239 INAILYENAICCSGFSPESLS-CLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDD 297
AIL++ + F PESLS C+ +P +P EEL R +LR+ F I D
Sbjct: 568 YKAILHDFSCHTYDF-PESLSHCVKRLPTPIPAEELQKRYNLRDKLTFMIG-----TRDY 621
Query: 298 ALSIERLS-DGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEE 356
AL I+ S DG+ +G+H+ADV+Y+V LD EA R + V +LQ +P LP +SEE
Sbjct: 622 ALHIDTGSIDGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFLPKKVSEE 681
Query: 357 VGSLNPGVDRLAFSIFWDLN-SAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESS 415
+ SL G D L SI L+ +G V+ +G +VI +S E AQ
Sbjct: 682 I-SLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESAQ------------ 728
Query: 416 NTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTP 475
+ ++ ++ + + V L+ K TD L L++ ++ F+
Sbjct: 729 -----------ANLQTNEALQLVDASAHVLTKLRLK--TDKKLDLQS---LYCFEF---- 768
Query: 476 YDSVLSGREDLNF-LFEEFMLL---------ANKTAAEVIARAFPDSALLRRHPAPNMRK 525
D + +++N +FE F + N+ A + FP +LR++ P+
Sbjct: 769 CDGQIPNIQNINMSIFEAFPIACSLQQIEHWVNEKVASHLMSVFPSKVILRKNQRPS--D 826
Query: 526 LREFEAFCSKHGLQLDTSSS-GQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFC 584
A G+ L SS+ + + ++K +L+ R M S +
Sbjct: 827 FASLVAVSELTGVNLSASSTPSEIMTEIATTKDKRT------KMLLQLTLRRMCNESEYT 880
Query: 585 SGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNN 644
G + D H+ + P YTHF P RRY D+ V R L A + + K R
Sbjct: 881 IGT-SNAKDVSHFVFSCPYYTHFCHPTRRYIDICVQRQLREAFDGRPDFSKDYRS----- 934
Query: 645 HREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRN 704
L+++ CN RN
Sbjct: 935 -------------------------------------------LLSITQSCNTLSNFYRN 951
Query: 705 VKDACVKLYMWILLK----KKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYD 754
++ + Y+ LL + ++ +A VLA+ ++ I I + +ERRI D
Sbjct: 952 AQEKSLHAYLCQLLHSINLRSGLVKHKAFVLAVDQEYIDIVIYEFGLERRISLD 1005
>sp|P54084|RNR_THIFE Ribonuclease R (Fragment) OS=Thiobacillus ferrooxidans GN=rnr PE=3
SV=2
Length = 439
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 197 EGDATIEMELVAARIDEWNEESPFPQAHVLHVFGR----GGEVEPQINAILYENAICCSG 252
EG + ++V I ++ + PQ HV+ + G G EVE I N
Sbjct: 193 EGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVE-----IAVRNYGLPHQ 247
Query: 253 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 312
+ E L+ + VP+ R+DLR+ + TID + A D DDA+ E + +G R+
Sbjct: 248 WPDEVLAEIKQFSETVPETMKAGRRDLRDLPLVTIDGADAKDFDDAVYAEVIENGF-RLT 306
Query: 313 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 372
V IADV+ +V P +ALD EA R SVY +R IPMLP +LS + SLNP VDRL
Sbjct: 307 VAIADVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMFCE 366
Query: 373 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNT 417
++++AG R +I S + +Y+ I+ G ++ + +
Sbjct: 367 MEMDAAGRSTGFRFDRGIIGSQRRFTYDEVAAILAGDAELRAQDA 411
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 167/386 (43%), Gaps = 62/386 (16%)
Query: 276 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 335
R+D R F FT+DP A +LDDALS+ L V VHI DV+ FV LD+EA+ +
Sbjct: 1334 REDCRAFLTFTVDPQGACNLDDALSVRDLGPRCE-VAVHITDVASFVPRDGVLDVEARRQ 1392
Query: 336 STSVYMLQRK-IPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSA-GDVVDRWIGRTVIRS 393
+ Y R+ +PMLP L ++V SL PG DRLA S+F + A G + +V++S
Sbjct: 1393 GAAFYAPGREPVPMLPASLCQDVLSLLPGRDRLAISLFLTMEKASGQLKSLRFAPSVVQS 1452
Query: 394 CCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRF 453
+LSYE A+++I G G +L + + D + + Y F
Sbjct: 1453 DRQLSYEEAEEVI--------RQHPGAGR-ELPARLDSVDAC-VVAACY----------F 1492
Query: 454 TDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSA 513
+ R F Y P + G + + +E+M+ N+ AE + +
Sbjct: 1493 SRLLRRHRLRSDCF----YEQPDEDGTLGFRAAHIMVKEYMIQFNRLVAEFLVGSECTRT 1548
Query: 514 L--LRRHPAPNMRKLREFEAFCSKHG------------------------LQLDTSSSGQ 547
+ LR PAP ++L+ A C KHG L L S Q
Sbjct: 1549 VTPLRWQPAPRSQQLK---ALCEKHGDRVPLSLHLGHHLHGGGGSPPDTRLHLLASLWKQ 1605
Query: 548 FH-QSLEQAREKLKDDYVLFDI--LINYATRPMQLA---SYFCSGDFKDDTDWGHYALAF 601
+ Q E++ D D+ + A R ++ A S F GHY+L
Sbjct: 1606 VQFAARTQDYEQMVDLVTTDDMHPFLAPAGRDLRKALERSAFGRCARGHQQQGGHYSLQV 1665
Query: 602 PVYTHFTSPLRRYPDLVVHRTLNAAL 627
YT TSP+RRY D+V+ R + AL
Sbjct: 1666 DWYTWATSPIRRYLDVVLQRQILLAL 1691
>sp|O74454|STS5_SCHPO Protein sts5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sts5 PE=1 SV=1
Length = 1066
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 132/561 (23%), Positives = 215/561 (38%), Gaps = 84/561 (14%)
Query: 118 GRVVSIIERSPRR--DGIVGFLNVNQWFN--YKGGSRKDAKKNRSSLSVPDREYIQLTPT 173
G VV++++R+P + G +G L + N + S N S P + + P+
Sbjct: 430 GHVVAVLQRAPGQVFSGTLGILRPSSAANKERQTSSGNQGSSNNSGNDKP--KIVWFKPS 487
Query: 174 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 233
+ P + + + P D L A I W S P ++ G
Sbjct: 488 DKRVPLIAIPTEQAPTDFLG----NDQAYAQRLFLASIKRWPVTSLHPFGMLVGELGSMD 543
Query: 234 EVEPQINAILYENAI---------------CCSGFSPESLSCLPCVPWEVPQEELLSRKD 278
+ Q++A+L++ + + S L+ C + L + D
Sbjct: 544 SMSAQVSALLHDTGVHSEPWEGSAATSAVTALNALSDNFLNVAGCADYRSEDVFLFVKND 603
Query: 279 LRNFCIF-------TIDPSTATD-LDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+ + I+ S+ATD + A I S G VG+H+ DVS + PG+ LD
Sbjct: 604 VSKAAVSEVKQHESNINSSSATDFVSSAFHIRPTSTGY-HVGIHVTDVSRVIEPGSPLDR 662
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTV 390
E Q RS +V + Q+ +P+ P L E + SL D S+ D++S G + WIG V
Sbjct: 663 ELQRRSIAVNLCQKSVPLFPTTLGEAL-SLREDKDCYTMSLLLDVSSTGKIRGTWIGWAV 721
Query: 391 IRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKD 450
IR + + A +++ Q + V S + + +
Sbjct: 722 IRPRKAYTMKEADELL-----------------QTDARLRLFHTVSSRLRTHHLGTDVPL 764
Query: 451 KRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFP 510
R+ R + F P ++ L + L E + AN+ A + + F
Sbjct: 765 SRYCRLVRRWDEESCSF------DPNETNLFISSAVEVLRETLLDAANRAVASHLRQEFR 818
Query: 511 DSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILI 570
++A LR P+ R ++ + G LD SS+ +SL L +D + +IL
Sbjct: 819 ENAFLRTQRLPSRENCRILQSMAIQMGCVLDLSSTKSLLRSL-----SLIEDDTVRNILQ 873
Query: 571 NY-------ATRPMQ-----LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 618
Y A MQ LAS S +D++D THFT+PL RY D+V
Sbjct: 874 LYYYKVTPRAVYEMQKYKGNLASQMMSLGIEDESD---------DLTHFTAPLERYGDIV 924
Query: 619 VHRTLNAALEAEKLYWKHRRM 639
VH L L E K R+
Sbjct: 925 VHYQLQLLLRGELASEKRLRV 945
>sp|Q8K9Q5|RNB_BUCAP Exoribonuclease 2 OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnb PE=3 SV=1
Length = 646
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 62/439 (14%)
Query: 221 PQAHVLHVFGRGG-EVEPQINAILYENAICCSGFSPESLSCL-PCVPW------------ 266
P+ +HVF G V I L N I + E + P +PW
Sbjct: 114 PKKSCVHVFQTGDWAVAKLIQHKLNGNHIFYAELIEEIVKANNPLIPWWVTLSRHNLERK 173
Query: 267 --EVPQEELL-----SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVS 319
++ +++L+ R+DL + TID D+DDAL IE + +G R+ V IAD +
Sbjct: 174 EPKIEKDDLILKNNSHREDLTHLNFITIDNFNTKDIDDALFIEEIHNGNLRLIVAIADPT 233
Query: 320 YFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG 379
++ G+ LDI A R + Y+ +PMLP LSE++ SLNP R + + G
Sbjct: 234 SYIKSGSKLDITAAKRGFTNYLPGFNVPMLPRSLSEDICSLNPHERRPVLACCITILKDG 293
Query: 380 DVVDR------WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSD 433
++ + W I+S KLSY++ D I+ K W E
Sbjct: 294 NICSKINFFLAW-----IKSKSKLSYDNVSDWIEKK----------SSWKP-----ETKS 333
Query: 434 VVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEF 493
+ I L+ + + R ++ L ++ + F F E G D V+ R + + EE
Sbjct: 334 IENQILLLHRLCLLRIKWRTSNAVLFQDSLEYRFQFSETGIVEDVVIEKRRIAHKIIEES 393
Query: 494 MLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS--SSGQFHQS 551
M++AN +AA +++ + H + +F + + L+ ++ + +
Sbjct: 394 MIIANISAANFLSKNL-GFGIYNTHAGFDPINAENVVSFLNNYNLKFTVKEITTLKGFCN 452
Query: 552 LEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPL 611
L + L D+Y+ ++ Y GDF T H+AL Y +TSP+
Sbjct: 453 LRRVLNILSDNYI-----------NSRIRRYQSFGDF-SITPSPHFALGLVEYATWTSPI 500
Query: 612 RRYPDLVVHRTLNAALEAE 630
R+Y D++ HR L + + +
Sbjct: 501 RKYSDMINHRLLKSIINQD 519
>sp|B8D7G3|RNB_BUCAT Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain Tuc7) GN=rnb PE=3 SV=1
Length = 649
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 41/365 (11%)
Query: 275 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 334
+RKDL + TID + D+DDAL + ++G + V IAD + ++ G+ LD+ A
Sbjct: 189 NRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASK 248
Query: 335 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR------WIGR 388
R + Y+ IPMLP LSE++ SLNP R + + G++ ++ W
Sbjct: 249 RIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLAW--- 305
Query: 389 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 448
I+S KLSY+H D I+ +G P + I L+ + +
Sbjct: 306 --IKSKSKLSYDHVSDWIE---------KIGSWIPPT------KSIANQILILHRLCLLR 348
Query: 449 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
R + L ++ + F E+G D ++ R + + EE M++AN +AA +++
Sbjct: 349 IKWRKKNAVLFKDSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKN 408
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ--SLEQAREKLKDDYVLF 566
+ H ++ +F + L +L + + ++Y+
Sbjct: 409 I-GFGIYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYI-- 465
Query: 567 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 626
+R + S+ GDF H+AL F Y +TSP+R+Y D++ HR L +
Sbjct: 466 ------DSRIRRFQSF---GDF-STIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSI 515
Query: 627 LEAEK 631
++ EK
Sbjct: 516 IKKEK 520
>sp|B8D959|RNB_BUCA5 Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain 5A) GN=rnb PE=3 SV=1
Length = 649
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 41/365 (11%)
Query: 275 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 334
+RKDL + TID + D+DDAL + ++G + V IAD + ++ G+ LD+ A
Sbjct: 189 NRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASK 248
Query: 335 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR------WIGR 388
R + Y+ IPMLP LSE++ SLNP R + + G++ ++ W
Sbjct: 249 RIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLAW--- 305
Query: 389 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 448
I+S KLSY+H D I+ +G P + I L+ + +
Sbjct: 306 --IKSKSKLSYDHVSDWIE---------KIGSWIPPT------KSIANQILILHRLCLLR 348
Query: 449 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
R + L ++ + F E+G D ++ R + + EE M++AN +AA +++
Sbjct: 349 IKWRKKNAVLFKDSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKN 408
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ--SLEQAREKLKDDYVLF 566
+ H ++ +F + L +L + + ++Y+
Sbjct: 409 I-GFGIYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYI-- 465
Query: 567 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 626
+R + S+ GDF H+AL F Y +TSP+R+Y D++ HR L +
Sbjct: 466 ------DSRIRRFQSF---GDF-STIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSI 515
Query: 627 LEAEK 631
++ EK
Sbjct: 516 IKKEK 520
>sp|P57354|RNB_BUCAI Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnb PE=3 SV=1
Length = 649
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 41/365 (11%)
Query: 275 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 334
+RKDL + TID + D+DDAL + ++G + V IAD + ++ G+ LD+ A
Sbjct: 189 NRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASK 248
Query: 335 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR------WIGR 388
R + Y+ IPMLP LSE++ SLNP R + + G++ ++ W
Sbjct: 249 RIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLAW--- 305
Query: 389 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 448
I+S KLSY+H D I+ +G P + I L+ + +
Sbjct: 306 --IKSKSKLSYDHVSDWIE---------KIGSWIPPT------KSIANQILILHRLCLLR 348
Query: 449 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 508
R + L ++ + F E+G D ++ R + + EE M++AN +AA +++
Sbjct: 349 IKWRKKNAVLFKDSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKN 408
Query: 509 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ--SLEQAREKLKDDYVLF 566
+ H ++ +F + L +L + + ++Y+
Sbjct: 409 I-GFGIYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYI-- 465
Query: 567 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 626
+R + S+ GDF H+AL F Y +TSP+R+Y D++ HR L +
Sbjct: 466 ------DSRIRRFQSF---GDF-STIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSI 515
Query: 627 LEAEK 631
++ EK
Sbjct: 516 IKKEK 520
>sp|B4T6U4|RNB_SALNS Exoribonuclease 2 OS=Salmonella newport (strain SL254) GN=rnb PE=3
SV=1
Length = 644
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 158/364 (43%), Gaps = 29/364 (7%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+E L R+DL TID ++ D+DDAL E L+DG ++ V IAD + ++ G+ LD
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW-IGRT 389
A++R+ + Y+ IPMLP LS+++ SL R A + + + G + D
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 390 VIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 449
I S KL+Y++ D + E++ T W Q E D+ + I+ L+ +
Sbjct: 304 TIESKAKLAYDNVSDWL------ENNGT----W-----QPENEDIAQQIRLLHRICLSRS 348
Query: 450 DKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAF 509
+ R + + F+ E G D V R N + EE M+ AN AA V+ R
Sbjct: 349 EWRHHHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANLCAARVL-RDK 407
Query: 510 PDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDIL 569
+ H + A HGL +D + RE D
Sbjct: 408 LGFGIYNVHTGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFLD-- 465
Query: 570 INYATRPMQLASYFCSGDFKDDTDWG-HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 628
+R + S+ + T+ G H+ L Y +TSP+R+Y D++ HR L A ++
Sbjct: 466 ----SRIRRFQSF-----AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516
Query: 629 AEKL 632
E +
Sbjct: 517 GEAI 520
>sp|Q6D5S7|RNB_ERWCT Exoribonuclease 2 OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=rnb PE=3 SV=1
Length = 644
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 159/388 (40%), Gaps = 45/388 (11%)
Query: 262 PCVPWEV-----------PQEEL-------LSRKDLRNFCIFTIDPSTATDLDDALSIER 303
P VPW V P+ E L R+DL TID ++ D+DDAL ++
Sbjct: 157 PLVPWWVTLSRHNLERSAPEVETTERHDGELVREDLTALNFVTIDSASTEDMDDALYVQD 216
Query: 304 LSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 363
DG ++ + IAD + +V G+ LD A+ R+ + Y+ IPMLP LS+++ SL P
Sbjct: 217 NGDGSLQLTIAIADPTAYVDAGSELDNIARQRAFTNYLPGFNIPMLPRALSDDICSLRPN 276
Query: 364 VDRLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGW 422
R + + + G + D I S KL+Y++ D ++ + GE
Sbjct: 277 ERRPVLACRVTIAADGALGDDIHFFAASIESKAKLAYDNVSDWLENQ---------GEWQ 327
Query: 423 PQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSG 482
PQ ++ I+ L+ + + R T + + FL E G D V+
Sbjct: 328 PQN------EEIAEQIRLLHRLCLARSEWRTTHALVFKDRPDYRFLLGEKGEVLDIVVEH 381
Query: 483 REDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDT 542
R N + EE M+ AN AA ++ R + H + + + A HG+Q D
Sbjct: 382 RRIANRIVEESMIAANVCAA-IVLRDKLGFGIYNVHNGFDPASIEQAVAVLDTHGVQADA 440
Query: 543 SSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFP 602
+ RE D I ++++ T H+ L
Sbjct: 441 QTLLTLDGFCTLRRELDAQPTQFLDSRIRRFQSFAEVST----------TPGPHFGLGLE 490
Query: 603 VYTHFTSPLRRYPDLVVHRTLNAALEAE 630
Y +TSP+R+Y D+V HR L A + +
Sbjct: 491 AYATWTSPIRKYGDMVNHRLLKAVITGQ 518
>sp|A1SWZ6|RNB_PSYIN Exoribonuclease 2 OS=Psychromonas ingrahamii (strain 37) GN=rnb
PE=3 SV=1
Length = 656
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 163/376 (43%), Gaps = 44/376 (11%)
Query: 265 PWEV--PQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFV 322
PW++ PQ LSR DL FTID D+DDAL IE +G ++ V I+D S +V
Sbjct: 180 PWKIIDPQ---LSRSDLTKTPFFTIDGVNTQDMDDALYIEADENGW-KLTVAISDPSAYV 235
Query: 323 LPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDV- 381
+ +D EA+ R+ ++Y+ +PMLP LS+ + SL G R +N G++
Sbjct: 236 PENSDMDAEAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIE 295
Query: 382 -----VDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVR 436
W I+S +L+Y + ++ + E SN + QL Q D +
Sbjct: 296 GEPAFYGAW-----IKSHYRLNYTDVSNYLENE---ELSNDCWKPSTQLAEQLRTLDSLS 347
Query: 437 SIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLL 496
+ + K D L+L N G + + R N L EE M+
Sbjct: 348 LKRLQWRTDNNAVFKNQPDYTLKLNNK---------GEISEILCEPRRSANRLVEESMIA 398
Query: 497 ANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLD--TSSSGQFHQSLEQ 554
AN A + +A+ + H + +L + + S+ G++ D T ++ + + Q
Sbjct: 399 ANICAGDFLAK-HKQQGVFNTHSGFSSERLGKVVSLLSEFGIESDIQTLATVTGYTKIRQ 457
Query: 555 AREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRY 614
L + Y+ R +L SY D K +T H+ L Y +TSP+R+Y
Sbjct: 458 QTNLLHNSYL--------DHRLRKLLSY---ADIK-NTPEAHFTLGVDHYATWTSPIRKY 505
Query: 615 PDLVVHRTLNAALEAE 630
DL+ HR + + L E
Sbjct: 506 GDLLNHRLIKSVLLKE 521
>sp|A4WAX5|RNB_ENT38 Exoribonuclease 2 OS=Enterobacter sp. (strain 638) GN=rnb PE=3 SV=1
Length = 644
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 157/382 (41%), Gaps = 65/382 (17%)
Query: 271 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 330
+E L R+DL TID ++ D+DDAL +E +DG + V IAD + ++ G+ LD
Sbjct: 184 DEGLERRDLTALNFVTIDSASTQDMDDALYVEEGADGKLHLTVAIADPTAWIAEGSKLDD 243
Query: 331 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD--RWIGR 388
A+VR+ + Y+ IPMLP LS+++ SL P R + + + G + D +
Sbjct: 244 SAKVRAFTNYLPGFNIPMLPRELSDDLCSLRPNQIRPVLACRMTIAADGTIEDDIEFFAA 303
Query: 389 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 448
T I S KL+Y+ + ++G G P E + + I L V
Sbjct: 304 T-IESKAKLAYDDVSNWLEGA---------GNWKP------ESEAIAQQITLLQRVCLSR 347
Query: 449 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVI--- 505
+ R T + + F+ E G D V R N + EE M+ AN AA V+
Sbjct: 348 GEWRKTHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDK 407
Query: 506 --------------ARAFPDSALLRRHPAP-NMRKLREFEAFCSKHGLQLDTSSSGQFHQ 550
A +ALL+ H + +++ E FC K +LD SG
Sbjct: 408 LGFGIYNVHTGFDPANTEALAALLKTHDVHVDPQEVLTLEGFC-KLRRELDAQPSGFLDS 466
Query: 551 SLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSP 610
+ + F +T P H+ L Y +TSP
Sbjct: 467 RIRR-----------FQSYAEISTEPGP-----------------HFGLGLEAYATWTSP 498
Query: 611 LRRYPDLVVHRTLNAALEAEKL 632
+R+Y D+V HR L A ++ E +
Sbjct: 499 IRKYGDMVNHRLLKAIVKGETI 520
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335,179,540
Number of Sequences: 539616
Number of extensions: 14543835
Number of successful extensions: 35455
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 35018
Number of HSP's gapped (non-prelim): 270
length of query: 880
length of database: 191,569,459
effective HSP length: 126
effective length of query: 754
effective length of database: 123,577,843
effective search space: 93177693622
effective search space used: 93177693622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)