Query 002793
Match_columns 880
No_of_seqs 337 out of 1879
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:24:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002793.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1506-1510//hhsearch_pdb/002793hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp8_J Exosome complex exonucl 1.0 1 1 1108.8 62.1 629 59-804 252-964 (977)
2 2vnu_D Exosome complex exonucl 1.0 1 1 1102.3 65.5 629 59-803 35-746 (760)
3 2id0_A Exoribonuclease 2; RNAs 1.0 1 1 1032.7 53.1 593 59-791 24-628 (644)
4 2r7d_A Ribonuclease II family 1.0 1 1 762.8 41.5 413 218-791 20-446 (469)
5 2ckz_B C25, DNA-directed RNA p 1.0 1 1 77.1 1.7 80 713-793 72-152 (218)
6 3ayh_B DNA-directed RNA polyme 1.0 1 1 70.4 2.6 78 713-792 72-155 (203)
7 4ayb_E DNA-directed RNA polyme 1.0 1 1 60.4 7.4 72 717-792 76-147 (180)
8 3bzc_A TEX; helix-turn-helix, 1.0 1 1 59.5 1.2 59 720-792 652-710 (785)
9 3h0g_G DNA-directed RNA polyme 1.0 1 1 58.5 -3.4 74 713-791 75-148 (172)
10 2c35_B Human RPB7, DNA-directe 1.0 1 1 56.5 7.4 76 713-793 72-149 (172)
No 1
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1108.76 Aligned_cols=629 Identities=29% Similarity=0.443 Sum_probs=545.8
Q ss_pred CC-CCCCCEE--EEEEECCCCCCCCCCCCCCCCCCCCCC-CCHHHHHC--EEEEEEECC---------------------
Q ss_conf 44-4565202--321110258989999996322235685-10122201--368898018---------------------
Q 002793 59 SE-AYNQEMI--EREGYNYINGHHPSTSDSTEKVSSSQQ-NDGMNAIE--RLSAMISSY--------------------- 111 (880)
Q Consensus 59 g~-~~h~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~--~~~~~~~~~--------------------- 111 (880)
|. ..|++++ || +.++++ +.|+||.+ .++|.||| +|.+.+...
T Consensus 252 G~l~v~~~~~~egf---V~~~~~--------~~DI~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~~~~~~~~~~~~~~~~ 320 (977)
T 2wp8_J 252 GNIQISEYNFLEGS---VSLPRF--------SKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDN 320 (977)
T ss_dssp EEEEECSSBTTEEE---ECCTTC--------SSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCCCSCCBCGGGSSTTCC
T ss_pred EEEEECCCCCCCEE---EECCCC--------CCCEEECCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997268972089---975799--------8778971767762075899999999246445565532221001233444
Q ss_pred ---------------------------------------CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf ---------------------------------------99984299999982388886257999812532247898521
Q 002793 112 ---------------------------------------PTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKD 152 (880)
Q Consensus 112 ---------------------------------------~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~ 152 (880)
.+++|+|+||+||||+++ .+||+|.....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~---------- 388 (977)
T 2wp8_J 321 PDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV---------- 388 (977)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHCSCCBCBEEEEEEEECCCC--EEEEEECGGGC----------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCC--EEEEEEEEECC----------
T ss_conf 100123344444334444445503443222221101235788846999999997897--69999998057----------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 11268888889882499995999999538954799726652001487444461999999325888999738999973999
Q 002793 153 AKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRG 232 (880)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~P~D~rip~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp~~~~~p~G~iv~~LG~~ 232 (880)
.. .....+++||+|+|+|+|.|.|++++.+. ..| .+|+|+|++||..+.+|.|+|+++||..
T Consensus 389 ----~~--~g~~~~~~~~~P~D~ri~~i~I~~~~~~~------~~g------~~vvv~I~~wp~~~~~p~G~iv~~LG~~ 450 (977)
T 2wp8_J 389 ----DP--QSSSTQNVFVILMDKCLPKVRIRTRRAAE------LLD------KRIVISIDSWPTTHKYPLGHFVRDLGTI 450 (977)
T ss_dssp ----CT--TCCSCEEEEEEESSTTSCCEEEEETTTTG------GGG------EEEEEEEEECCTTCSSCEEEEEEEEEES
T ss_pred ----CC--CCCCCCEEEEEECCCCCCCEEECCCCCCC------CCC------CEEEEEEEECCCCCCCCCEEEEEEECCC
T ss_conf ----66--67766329999888987617952444410------389------9899999645677889618999982789
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCC--CCCCC----------HH-HHCCCCCCCCCEEEEECCCCCCCCCCEE
Q ss_conf 99167899998862989999996665039999--99999----------22-2103844788619998499998977559
Q 002793 233 GEVEPQINAILYENAICCSGFSPESLSCLPCV--PWEVP----------QE-ELLSRKDLRNFCIFTIDPSTATDLDDAL 299 (880)
Q Consensus 233 ~d~~~e~~ail~e~~i~~~~F~~~vl~~~~~~--~~~i~----------~~-~~~~R~DLr~~~vfTIDp~~akDlDDAi 299 (880)
+++++++++|+.+|+++..+||+++++|++.. +|.++ ++ +.++|+|||++++|||||++|+|+||||
T Consensus 451 ~d~~~e~~~il~~~~l~~~~Fp~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~akDlDDAv 530 (977)
T 2wp8_J 451 ESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDAL 530 (977)
T ss_dssp SCSHHHHHHHHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGCEECTTSCCEEEECTTCSCCCEEE
T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCEE
T ss_conf 98404588789876999666999999998750454335532233223555522002441556958998799997542258
Q ss_pred EEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99990896379999973332101589975699983754056399821699842220024789999437999999976899
Q 002793 300 SIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG 379 (880)
Q Consensus 300 sie~l~~G~~~igVHIADVS~~V~~gS~LD~eA~~RgtSvYLp~~viPMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G 379 (880)
|++++++|+|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|
T Consensus 531 sie~~~~G~~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~~LS~~lcSL~pg~dRla~Sv~~~id~~G 610 (977)
T 2wp8_J 531 HAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSA 610 (977)
T ss_dssp EEEECTTSCEEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTS
T ss_pred EEEECCCCCEEEEEEECCHHHEECCCCHHHHHHHHCCCCEECCCCEEECCCHHHHCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 99996899199999816588764899989999997187285799427388968926635558999468999999998999
Q ss_pred CEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79999999999941552499999988816999656676689987456887614599999999999999999673199710
Q 002793 380 DVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALR 459 (880)
Q Consensus 380 ~i~~~~i~~SvIrS~~rLtYe~vq~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~la~~Lr~~R~~~Gal~ 459 (880)
+|+++||++|+|+|+++|||++||++|+++. ...++.++|..|+++|++||++|+++|+++
T Consensus 611 ~i~~~~~~~svIrs~~rltY~~v~~~l~~~~-------------------~~~~l~~~L~~L~~la~~Lr~~R~~~Gai~ 671 (977)
T 2wp8_J 611 NIVNVNFMKSVIRSREAFSYEQAQLRIDDKT-------------------QNDELTMGMRALLKLSVKLKQKRLEAGALN 671 (977)
T ss_dssp CEEEEEEEEEEEEBSEEEEHHHHHHHHHCTT-------------------CCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEEEEEEEEEECCEECHHHHHHHHHCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8988899989998465386999999982887-------------------435899999999999999999998679833
Q ss_pred CCCCCCEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHC-C
Q ss_conf 26998332107-999827878247872789999999999999999999759993069837999957899999999982-9
Q 002793 460 LENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-G 537 (880)
Q Consensus 460 l~~~e~~i~ld-e~g~p~~~~~~~~~~s~~LIEEfMilAN~~vA~~l~~~~~~~~llR~h~~P~~~kl~~l~~~~~~~-g 537 (880)
|+.||++|.+| +.|.|+++...++.+||.|||||||+||++||+|+.++++.+++||+|+.|++++++.|.+++..+ |
T Consensus 672 ~~~pE~~~~ld~e~g~~~~i~~~~~~~a~~LIEE~MllAN~~vA~~l~~~~~~~~lyR~h~~P~~~kl~~l~~~~~~~~G 751 (977)
T 2wp8_J 672 LASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKN 751 (977)
T ss_dssp CCSHHHHTTSCCTTCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 57873389961678966899965787588999999999999999999974789757871799998999999999997659
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 84479990579999999998503888999999998804567817614588898988664223788710005789882458
Q 002793 538 LQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDL 617 (880)
Q Consensus 538 ~~l~~~~~~~l~~sL~~i~~~~~~~~~~~~~l~~~~lr~m~~A~Y~~~g~~~s~~~~~HfgL~~~~YTHFTSPIRRY~DL 617 (880)
+.++..+++.|+.+|+++.+ +.++....++..+++|+|++|+|+++|.. ++++.+|||||++.|||||||||||+||
T Consensus 752 ~~l~~~~~~~l~~~L~~~~~--~~~~~~~~ll~~~~lrsm~~A~Y~~sg~~-s~~~~gHfgLa~~~YtHfTSPIRRY~DL 828 (977)
T 2wp8_J 752 MSISLESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDV 828 (977)
T ss_dssp CCCCCSSHHHHHHHHHHCCC--SSCTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGSCBTTTTBSSCCCCSCTTTBHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCEEECCCCC-CCCCCCCEECCCCCEECCCCHHHHHHHH
T ss_conf 87789999999999998559--74389999999999875207430013656-8888885202788744538667607999
Q ss_pred HHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999997002244421039877776654454223411452113455566677897662499825579999999889
Q 002793 618 VVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCND 697 (880)
Q Consensus 618 ivHR~L~a~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~~~~~~~~~~~~l~~~~~l~~i~~~~N~ 697 (880)
+|||||+++|.+++... . ..+.+.|..+|++||.
T Consensus 829 ivHR~L~a~L~~~~~~~----~------------------------------------------~~~~~~l~~i~~~~s~ 862 (977)
T 2wp8_J 829 VAHRQLAGAIGYEPLSL----T------------------------------------------HRDKNKMDMICRNINR 862 (977)
T ss_dssp HHHHHHHHHTTSSCCCG----G------------------------------------------GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCC----C------------------------------------------CCCHHHHHHHHHHHCH
T ss_conf 99999999962799863----2------------------------------------------1488999999998488
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECC--CEEEEEECCCCEEEEEEE
Q ss_conf 989999999999999999997613625996999976356799999558658999812048--807998134422898651
Q 002793 698 RKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE--GLIVEWLETTSTLVLSLC 775 (880)
Q Consensus 698 r~~~Ar~A~r~s~~l~~~~~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~--~~~~e~~~~~~~Lv~~~~ 775 (880)
+++.|+.|+|++.++|+|.||+.+ |..++|+|++|.++||+|+||++|+||+||++++. ++||+|++.+++|+|+
T Consensus 863 ~er~A~~aeR~~~~~~~~~~l~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~-- 939 (977)
T 2wp8_J 863 KHRNAQFAGRASIEYYVGQVMRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFV-- 939 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCEEEEE--
T ss_conf 888788999888999986653056-40788999887388489997378749999905366777606883544479961--
Q ss_pred CCCCEEECC-CCCEEEECEEEEEEEECCCC
Q ss_conf 023302128-97247861039999812887
Q 002793 776 AHKRSFKRG-GPGNYRALEEVALVVRPNDL 804 (880)
Q Consensus 776 ~~k~~~~~g-~~~~~r~~d~v~v~~~~~~~ 804 (880)
++ -| ....|+.+|+|.|++.-.+.
T Consensus 940 ~~-----~g~~~~~~~lGD~V~VkV~~vd~ 964 (977)
T 2wp8_J 940 PT-----NSDKPRDVYVFDKVEVQVRSVMD 964 (977)
T ss_dssp CT-----TCCSCEEEETTCEEEEEECCCCC
T ss_pred CC-----CCCCCCEECCCCEEEEEEEEECC
T ss_conf 37-----77667198169999999999857
No 2
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=1.00 E-value=1 Score=1102.34 Aligned_cols=629 Identities=30% Similarity=0.444 Sum_probs=544.5
Q ss_pred CC-CCCCCEE--EEEEECCCCCCCCCCCCCCCCCCCCCC-CCHHHHHC--EEEEEEECC---------------------
Q ss_conf 44-4565202--321110258989999996322235685-10122201--368898018---------------------
Q 002793 59 SE-AYNQEMI--EREGYNYINGHHPSTSDSTEKVSSSQQ-NDGMNAIE--RLSAMISSY--------------------- 111 (880)
Q Consensus 59 g~-~~h~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~--~~~~~~~~~--------------------- 111 (880)
|. ..|+.++ || +..++. +.|+||.+ .++|.||| +|.+.+...
T Consensus 35 G~l~~~~~~~~~gf---v~~~~~--------~~di~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~~~~~~~~~~~~~~~~ 103 (760)
T 2vnu_D 35 GNIQISEYNFLEGS---VSLPRF--------SKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDN 103 (760)
T ss_dssp EEEEECSSBTTEEE---ECCSSS--------SSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCCCSSCBCTTTCC----
T ss_pred EEEEEECCCCCCEE---EECCCC--------CCCEEECCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998158972189---974799--------7788981746634265899999999335445565532221000133344
Q ss_pred ---------------------------------------CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf ---------------------------------------99984299999982388886257999812532247898521
Q 002793 112 ---------------------------------------PTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKD 152 (880)
Q Consensus 112 ---------------------------------------~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~ 152 (880)
++++|+|+||+||||+++ .+||+|.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~---------- 171 (760)
T 2vnu_D 104 PDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV---------- 171 (760)
T ss_dssp -----------------------------------------CBCBEEEEEEEECCCC--EEEEEECGGGC----------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCC--EEEEEEEECCC----------
T ss_conf 211223333333323333446401221101111100235788836999999997795--59999997367----------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 11268888889882499995999999538954799726652001487444461999999325888999738999973999
Q 002793 153 AKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRG 232 (880)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~P~D~rip~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp~~~~~p~G~iv~~LG~~ 232 (880)
.+ .....+++||+|+|+|+|.|.|++++.+ ...| .+|+|+|++||..+.+|.|+|+++||..
T Consensus 172 ----~~--~~~~~~~~~~~P~d~ri~~i~i~~~~~~------~~~g------~~vvv~i~~~p~~~~~p~G~i~~~LG~~ 233 (760)
T 2vnu_D 172 ----DP--QSSSTQNVFVILMDKCLPKVRIRTRRAA------ELLD------KRIVISIDSWPTTHKYPLGHFVRDLGTI 233 (760)
T ss_dssp ----CT--TCCSCEEEEEEESSTTSCCEEEEETTGG------GGTT------EEEEEEEEECCTTCSSCEEEEEEEEEES
T ss_pred ----CC--CCCCCCEEEEEECCCCCCCEEEECCCCC------CCCC------CEEEEEEEECCCCCCCCCEEEEEEECCC
T ss_conf ----66--6676515999988898751898365340------0289------9899999554677889738999980889
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCC--CCCCCH----------H-HHCCCCCCCCCEEEEECCCCCCCCCCEE
Q ss_conf 99167899998862989999996665039999--999992----------2-2103844788619998499998977559
Q 002793 233 GEVEPQINAILYENAICCSGFSPESLSCLPCV--PWEVPQ----------E-ELLSRKDLRNFCIFTIDPSTATDLDDAL 299 (880)
Q Consensus 233 ~d~~~e~~ail~e~~i~~~~F~~~vl~~~~~~--~~~i~~----------~-~~~~R~DLr~~~vfTIDp~~akDlDDAi 299 (880)
+++++++++|+.+|+|+..+||+++++|++.. +|.+++ + +.++|+|||++++|||||++|+|+||||
T Consensus 234 ~d~~~e~~~il~~~~l~~~~F~~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~a~D~DDAv 313 (760)
T 2vnu_D 234 ESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDAL 313 (760)
T ss_dssp SCSHHHHHHHHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEE
T ss_pred CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCEE
T ss_conf 98336799999977999767999999998750453236533343222454420211533002808998699997653148
Q ss_pred EEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99990896379999973332101589975699983754056399821699842220024789999437999999976899
Q 002793 300 SIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG 379 (880)
Q Consensus 300 sie~l~~G~~~igVHIADVS~~V~~gS~LD~eA~~RgtSvYLp~~viPMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G 379 (880)
|++++++|+|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||.+|
T Consensus 314 sie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G 393 (760)
T 2vnu_D 314 HAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSA 393 (760)
T ss_dssp EEEECTTSCEEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTC
T ss_pred EEEECCCCCEEEEEEECCHHHEECCCCHHHHHHHHCCCCEECCCCEEECCCHHHCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 99996899399999806688865899989999997287285699128479967826645558999678999999991999
Q ss_pred CEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79999999999941552499999988816999656676689987456887614599999999999999999673199710
Q 002793 380 DVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALR 459 (880)
Q Consensus 380 ~i~~~~i~~SvIrS~~rLtYe~vq~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~la~~Lr~~R~~~Gal~ 459 (880)
+|+++||++|+|+|+++|||++||++|+++. ...++.++|..|+++|++||++|+++|+++
T Consensus 394 ~v~~~~~~~svI~s~~rltY~~v~~~l~~~~-------------------~~~~l~~~L~~L~~la~~lr~~R~~~Gai~ 454 (760)
T 2vnu_D 394 NIVNVNFMKSVIRSREAFSYEQAQLRIDDKT-------------------QNDELTMGMRALLKLSVKLKQKRLEAGALN 454 (760)
T ss_dssp CEEEEEEEEEEEEBSEEEEHHHHHHHHHCTT-------------------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEEEEEEEEEECCEECHHHHHHHHHCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8999999989998254286999999982887-------------------535899999999999999999998679844
Q ss_pred CCCCCCEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHC-C
Q ss_conf 26998332107-999827878247872789999999999999999999759993069837999957899999999982-9
Q 002793 460 LENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-G 537 (880)
Q Consensus 460 l~~~e~~i~ld-e~g~p~~~~~~~~~~s~~LIEEfMilAN~~vA~~l~~~~~~~~llR~h~~P~~~kl~~l~~~~~~~-g 537 (880)
|+.|+++|.+| +.|.|+++..+++.+||.|||||||+||++||+|+.++++.+++||+|+.|++++++.|.+++..+ |
T Consensus 455 ~~~pe~~~~ld~e~g~~~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g 534 (760)
T 2vnu_D 455 LASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKN 534 (760)
T ss_dssp CCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 68873489970678967899976786478899999999999999999973788736773599998999999999997649
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 84479990579999999998503888999999998804567817614588898988664223788710005789882458
Q 002793 538 LQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDL 617 (880)
Q Consensus 538 ~~l~~~~~~~l~~sL~~i~~~~~~~~~~~~~l~~~~lr~m~~A~Y~~~g~~~s~~~~~HfgL~~~~YTHFTSPIRRY~DL 617 (880)
+.++..+++.++.+|+++.+ +.++....++..+++|+|++|.|+|+|.. ++++.+|||||++.|||||||||||+||
T Consensus 535 ~~l~~~~~~~l~~~l~~~~~--~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~-~~~~~~HfgLa~~~YtHfTSPIRRY~DL 611 (760)
T 2vnu_D 535 MSISLESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDV 611 (760)
T ss_dssp CCCCCSCHHHHHHHHHTCCB--TTBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCEECCCCCEECCCCHHHHHHHH
T ss_conf 87688999999999997448--85189999999999986217530035767-8998885101788634538667606899
Q ss_pred HHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999997002244421039877776654454223411452113455566677897662499825579999999889
Q 002793 618 VVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCND 697 (880)
Q Consensus 618 ivHR~L~a~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~~~~~~~~~~~~l~~~~~l~~i~~~~N~ 697 (880)
+|||||+++|.+++.... ..+.+.|..+|.+||.
T Consensus 612 ivHR~L~~~l~~~~~~~~----------------------------------------------~~~~~~l~~~~~~~s~ 645 (760)
T 2vnu_D 612 VAHRQLAGAIGYEPLSLT----------------------------------------------HRDKNKMDMICRNINR 645 (760)
T ss_dssp HHHHHHHHHTTSSCCCGG----------------------------------------------GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCC----------------------------------------------CCCHHHHHHHHHHHHH
T ss_conf 999999999706998622----------------------------------------------1478999999998548
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECC--CEEEEEECCCCEEEEEEE
Q ss_conf 989999999999999999997613625996999976356799999558658999812048--807998134422898651
Q 002793 698 RKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE--GLIVEWLETTSTLVLSLC 775 (880)
Q Consensus 698 r~~~Ar~A~r~s~~l~~~~~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~--~~~~e~~~~~~~Lv~~~~ 775 (880)
+++.|+.|+|++.++|+|.||+.+. ..++|+|++|.++|++|+|+++|+||+||++++. ++||+|++.+++|++.
T Consensus 646 ~er~A~~aer~~~~~~~~~~l~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~-- 722 (760)
T 2vnu_D 646 KHRNAQFAGRASIEYYVGQVMRNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFV-- 722 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEEEEEECCEEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEE--
T ss_conf 8999999998778999987751675-3899999999888179998279808999902146777526883101389973--
Q ss_pred CCCCEEECCCCCEEEECEEEEEEEECCC
Q ss_conf 0233021289724786103999981288
Q 002793 776 AHKRSFKRGGPGNYRALEEVALVVRPND 803 (880)
Q Consensus 776 ~~k~~~~~g~~~~~r~~d~v~v~~~~~~ 803 (880)
++.. .....|+.+|+|.|++.-.+
T Consensus 723 ~~~~----~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 723 PTNS----DKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp CTTC----SSCEEEETTCEEEEEEC---
T ss_pred CCCC----CCCCEEECCCEEEEEEEEEE
T ss_conf 3787----66839915999999999997
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=1.00 E-value=1 Score=1032.73 Aligned_cols=593 Identities=20% Similarity=0.220 Sum_probs=512.9
Q ss_pred CC-CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHC--EEEEEEECCCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 44-456520232111025898999999632223568510122201--368898018999842999999823888862579
Q 002793 59 SE-AYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIE--RLSAMISSYPTKRPTGRVVSIIERSPRRDGIVG 135 (880)
Q Consensus 59 g~-~~h~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~~~~~~p~G~VV~IleR~~~~~~~vG 135 (880)
|. ..|++||||+. .++ ++|+||..+++|.||| +|.+.+... +.+++|+|++||||++ +.+||
T Consensus 24 G~~~~~~~GfgF~~---~d~---------~~difi~~~~~~~a~~GD~V~v~i~~~-~~~~eg~v~~iler~~--~~~vg 88 (644)
T 2id0_A 24 GVVKATEKGFGFLE---VDA---------QKSYFIPPPQMKKVMHGDRIIAVIHSE-KERESAEPEELVEPFL--TRFVG 88 (644)
T ss_dssp EEEECCSSSCEEEE---CSS---------SCEEEECHHHHTTSCTTCEEEEEEECC-SSSCEEEEEEEEECSC--SEEEE
T ss_pred EEEEEECCCCEEEE---ECC---------CCCEEECHHHHHCCCCCCEEEEEEECC-CCCEEEEEEEEEECCC--CEEEE
T ss_conf 99999469858999---789---------987899988971578999999999647-9974899999995178--78999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCEEEEEEEEECC
Q ss_conf 99812532247898521112688888898824999959999995389547997266520014874444619999993258
Q 002793 136 FLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWN 215 (880)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~D~rip~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp 215 (880)
++.. .+ ++.+++|+|++++. .|+.++... .....++|+ +|+|+|++||
T Consensus 89 ~~~~----------------~~--------~~~~v~pdd~~~~~-~i~~~~~~~-~~~~~~~g~------~v~v~i~~~p 136 (644)
T 2id0_A 89 KVQG----------------KN--------DRLAIVPDHPLLKD-AIPCRAARG-LNHEFKEGD------WAVAEMRRHP 136 (644)
T ss_dssp EEEE----------------ET--------TEEEEEESSTTCCS-CEECCBCSS-CCCCCCSSC------EEEEEEEECG
T ss_pred EEEE----------------EC--------CEEEEEECCCCCCC-CCCCCCCCC-CCCCCCCCC------EEEEEEECCC
T ss_conf 9999----------------18--------78999988987444-236621255-433589998------9999993276
Q ss_pred CCCCCC-CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 889997-3899997399999167899998862989999996665039999999992221038447886199984999989
Q 002793 216 EESPFP-QAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATD 294 (880)
Q Consensus 216 ~~~~~p-~G~iv~~LG~~~d~~~e~~ail~e~~i~~~~F~~~vl~~~~~~~~~i~~~~~~~R~DLr~~~vfTIDp~~akD 294 (880)
..+.+| .|+|+++||..+++.+++++++.+|++ +.+||++++++ ++++ .++|+|||++++|||||++|+|
T Consensus 137 ~~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l-~~~fp~~~~~~-------~~~~-~~~R~Dlr~l~~~TID~~~a~D 207 (644)
T 2id0_A 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL-EKEAPDGVATE-------MLDE-GLVREDLTALDFVTIDSASTED 207 (644)
T ss_dssp GGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTC-CCSCCCCCCCC-------CCCS-CCCCCCCCSSCCBEEECSSCSC
T ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCC-CCCCCHHHHHC-------CCCC-CCCCEECCCCCEEEECCCCCCC
T ss_conf 7788984399999958999853058889997498-98898577613-------7821-1364606688289980899986
Q ss_pred CCCEEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEE
Q ss_conf 77559999908963799999733321015899756999837540563998216998422200247899994379999999
Q 002793 295 LDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWD 374 (880)
Q Consensus 295 lDDAisie~l~~G~~~igVHIADVS~~V~~gS~LD~eA~~RgtSvYLp~~viPMLP~~Ls~~lcSL~pg~dRlA~Sv~~~ 374 (880)
+|||||++++++|+|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+
T Consensus 208 ~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~~~iPMLP~~Ls~~lcSL~p~~dR~a~s~~~~ 287 (644)
T 2id0_A 208 MDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 (644)
T ss_dssp CCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCSSCEEEEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCHHHEECCCCHHHHHHHHHCCCEECCCEEEECCCHHHHCCCCCCCCCCCEEEEEEEEE
T ss_conf 66669999938997799999456788649999899999970873857997794888888517666799992579999999
Q ss_pred ECCCCCEEE-EEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 768997999-9999999941552499999988816999656676689987456887614599999999999999999673
Q 002793 375 LNSAGDVVD-RWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRF 453 (880)
Q Consensus 375 id~~G~i~~-~~i~~SvIrS~~rLtYe~vq~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~la~~Lr~~R~ 453 (880)
||++|++++ +||++|+|+|+++|||++||++|+++.. ..| ...++.++|..|+++|++||++|.
T Consensus 288 id~~G~v~~~~~~~~svI~s~~rltY~~v~~~l~~~~~---------~~~------~~~~~~~~L~~L~~la~~lr~~R~ 352 (644)
T 2id0_A 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD---------WQP------ESEAIAEQVRLLAQICQRRGEWRH 352 (644)
T ss_dssp ECSSCCCSTTCCEEEEEEECCCEEEHHHHHHHTTCCSS---------CCC------SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCEEECCEEEEEEEEECCCCCHHHHHHHHHCCCC---------CCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90999896501898999991454079999999717986---------666------517899999999999999999998
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 19971026998332107999827878247872789999999999999999999759993069837999957899999999
Q 002793 454 TDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC 533 (880)
Q Consensus 454 ~~Gal~l~~~e~~i~lde~g~p~~~~~~~~~~s~~LIEEfMilAN~~vA~~l~~~~~~~~llR~h~~P~~~kl~~l~~~~ 533 (880)
++|+++|+.|+++|.+|++|.|.++...++.+||.|||||||+||++||+|+.++ ..+++||+|+.|++++++.|.+++
T Consensus 353 ~~Gai~~~~pe~~~~ld~~g~~~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~-~~~~lyR~h~~p~~~~l~~l~~~~ 431 (644)
T 2id0_A 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK-LGFGIYNVHMGFDPANADALAALL 431 (644)
T ss_dssp HHSCCCCCCCCEEEEECTTSCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCEEEBCCBCTTTHHHHHHHH
T ss_pred HCCCCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 6898433687338998999978899981588589999999999999999999970-899533307999989999999999
Q ss_pred HHCCCCCCCCCH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 982984479990---57999999999850388899999999880456781761458889898866422378871000578
Q 002793 534 SKHGLQLDTSSS---GQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSP 610 (880)
Q Consensus 534 ~~~g~~l~~~~~---~~l~~sL~~i~~~~~~~~~~~~~l~~~~lr~m~~A~Y~~~g~~~s~~~~~HfgL~~~~YTHFTSP 610 (880)
..+|+.++..+. ..++..++.+. +.+.. ++..+++|+|++|.| ++++.+|||||++.|||||||
T Consensus 432 ~~~g~~l~~~~~~~~~~~~~l~~~~~----~~~~~--~l~~~l~r~~~~a~y-------s~~~~~HfgLa~~~YthfTSP 498 (644)
T 2id0_A 432 KTHGLHVDAEEVLTLDGFCKLRRELD----AQPTG--FLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSP 498 (644)
T ss_dssp HHHTCCCCHHHHTSHHHHHHHHHHHH----TSSSS--HHHHHHTTSBCCCEE-------ESSCCCBTTTTBSSCBCCSCT
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHC----CCHHH--HHHHHHHHHCCCCCC-------CCCCCCCHHCCCCCEEEECCH
T ss_conf 97299878776559799999999863----99499--999999986155452-------588877421077754406783
Q ss_pred CCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 98824589999999999700224442103987777665445422341145211345556667789766249982557999
Q 002793 611 LRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVN 690 (880)
Q Consensus 611 IRRY~DLivHR~L~a~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~~~~~~~~~~~~l~~~~~l~~ 690 (880)
||||+||+|||||+++|.+++.. . ....
T Consensus 499 IRRY~DLivHR~l~a~l~~~~~~-----~-----------------------------------------------~~~~ 526 (644)
T 2id0_A 499 IRKYGDMINHRLLKAVIKGETAT-----R-----------------------------------------------PQDE 526 (644)
T ss_dssp TTBHHHHHHHHHHHHHTTC---------C-----------------------------------------------CCTT
T ss_pred HHCCHHHHHHHHHHHHHCCCCCC-----C-----------------------------------------------CHHH
T ss_conf 22026899999999997389988-----5-----------------------------------------------4799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEEEECCEEEEEEECCCEEEEEEEEECCC--EEEEEECC
Q ss_conf 9999889989999999999999999997613625--9969999763567999995586589998120488--07998134
Q 002793 691 VATHCNDRKLACRNVKDACVKLYMWILLKKKEVL--LSEARVLALGPRFMTIYIEKLAIERRIYYDEVEG--LIVEWLET 766 (880)
Q Consensus 691 i~~~~N~r~~~Ar~A~r~s~~l~~~~~lk~~~~~--~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~--~~~e~~~~ 766 (880)
++.+||++++.|++|+|++.++|+|.||+.+.|. .++|+|++|.++|++|.|+++|+||+||++++.+ +||+|++.
T Consensus 527 ~~~~~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~ 606 (644)
T 2id0_A 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE 606 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEECHHCCCCCCEEEECCC
T ss_conf 99999999999999999999999998865314777559999999968936999717868999985004676751688122
Q ss_pred CCEEEEEEECCCCEEECCCCCEEEE
Q ss_conf 4228986510233021289724786
Q 002793 767 TSTLVLSLCAHKRSFKRGGPGNYRA 791 (880)
Q Consensus 767 ~~~Lv~~~~~~k~~~~~g~~~~~r~ 791 (880)
+++|.. +++..|++||.+++++
T Consensus 607 ~~~l~~---~~~~~~~lGD~V~VkV 628 (644)
T 2id0_A 607 NGTVQI---KGETVYKVTDVIDVTI 628 (644)
T ss_dssp TTEEEE---TTEEEEETTCEEEEEE
T ss_pred CCEEEE---CCCCEECCCCEEEEEE
T ss_conf 347981---5897847899999999
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=1.00 E-value=1 Score=762.84 Aligned_cols=413 Identities=21% Similarity=0.236 Sum_probs=358.4
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHH-------------HHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHH-CCCCCCCCCE
Q ss_conf 999738999973999991678999-------------98862989999996665039999999992221-0384478861
Q 002793 218 SPFPQAHVLHVFGRGGEVEPQINA-------------ILYENAICCSGFSPESLSCLPCVPWEVPQEEL-LSRKDLRNFC 283 (880)
Q Consensus 218 ~~~p~G~iv~~LG~~~d~~~e~~a-------------il~e~~i~~~~F~~~vl~~~~~~~~~i~~~~~-~~R~DLr~~~ 283 (880)
+..|.|+|+++||..+++.++++. ++.++++ +..|+. ++ . ++.+. ++|+|||+++
T Consensus 20 ~~~~~g~i~~~LG~~~~~~~~~~lL~~~G~~~~~~~~~~~~~~l-p~~fp~-----l~-~----~~~~~~~~R~Dlr~l~ 88 (469)
T 2r7d_A 20 GRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRA-ALNAVE-----LP-V----PDFDPAEERLDLTHLP 88 (469)
T ss_dssp TSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTC-CCSCCC-----CC-C----CCCCTTSCCEECTTSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCC-CCCCCC-----CC-C----CCCCCCCCCEECCCCC
T ss_conf 79966357334499998146899998618777203578997499-988866-----67-8----8752123753065697
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 99984999989775599999089637999997333210158997569998375405639982169984222002478999
Q 002793 284 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 363 (880)
Q Consensus 284 vfTIDp~~akDlDDAisie~l~~G~~~igVHIADVS~~V~~gS~LD~eA~~RgtSvYLp~~viPMLP~~Ls~~lcSL~pg 363 (880)
+|||||++|+|+|||||++++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+.| +++|||+||
T Consensus 89 ~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L-~~~cSL~pg 167 (469)
T 2r7d_A 89 TFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKAGLGLH 167 (469)
T ss_dssp EEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH-HHHHSTTSS
T ss_pred EEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHEECCCCHHHHHHHHHCCEEECCCCEECCCCHHH-HCCCCCCCC
T ss_conf 8997599988766169999968997899999355755658999899999983863866993276889678-261678999
Q ss_pred CCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 94379999999768997999999999994155249999998881699965667668998745688761459999999999
Q 002793 364 VDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 443 (880)
Q Consensus 364 ~dRlA~Sv~~~id~~G~i~~~~i~~SvIrS~~rLtYe~vq~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~ 443 (880)
++|+||||.|+||++|+|++++|++|+|+|+ +|||++||++|+++. ++|..|++
T Consensus 168 ~dr~als~~~~id~~G~i~~~~~~~svI~s~-rltY~~v~~~l~~~~-------------------------~~L~~L~~ 221 (469)
T 2r7d_A 168 EVSPALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLEAGE-------------------------EPFVTLAR 221 (469)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEEEEEEECEE-EEEHHHHHHHHHTTC-------------------------TTHHHHHH
T ss_pred CCEEEEEEEEEECCCCCEEEEEEEEEEEEEC-CCCHHHHHHHHHCCC-------------------------HHHHHHHH
T ss_conf 9357999999996899895658999999940-216999999996782-------------------------99999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 99999996731997102699833210799982787824787278999999999999999999975999306983799995
Q 002793 444 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNM 523 (880)
Q Consensus 444 la~~Lr~~R~~~Gal~l~~~e~~i~lde~g~p~~~~~~~~~~s~~LIEEfMilAN~~vA~~l~~~~~~~~llR~h~~P~~ 523 (880)
+|++||++|.++|+++|+.|+.+|.+|++ +..+...++.+++.|||||||+||++||+|+.++ +.|++||+|+.|+.
T Consensus 222 la~~lr~~R~~~Gai~~~~pe~~i~~d~~--~~~i~~~~~~~a~~lIeE~MilAN~~vA~~l~~~-~ip~~yR~h~~p~~ 298 (469)
T 2r7d_A 222 LARASRRLREGEGALSIDLPEVRVKADET--GASVFPLPKPEMRTVVQECMTLAGWGTAIFADDN-EIPLPFATQDYPTR 298 (469)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCEEEEEETT--EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEECCCSS
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCC--CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCC
T ss_conf 99999999986799556887428997798--4359962788689999999999999999999975-99806761899981
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999999999829844799905799999999985038889999999988045678176145888989886642237887
Q 002793 524 RKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPV 603 (880)
Q Consensus 524 ~kl~~l~~~~~~~g~~l~~~~~~~l~~sL~~i~~~~~~~~~~~~~l~~~~lr~m~~A~Y~~~g~~~s~~~~~HfgL~~~~ 603 (880)
.++ . ... .+...++|+|++|.|+ +.+.+|||||++.
T Consensus 299 ~~~-----------------~----------------~~~----~~~~~l~r~m~~a~y~-------~~~~~HfgL~~~~ 334 (469)
T 2r7d_A 299 EVA-----------------G----------------DTL----PAMWARRKTLARTRFQ-------PSPGPHHGMGLDL 334 (469)
T ss_dssp CCC-----------------C----------------CSH----HHHHHHHHHCCCEEEE-------SSCCCBTTTTBSC
T ss_pred CCC-----------------C----------------CHH----HHHHHHHHHCCCCCCC-------CCCCCCHHHCCCC
T ss_conf 218-----------------6----------------247----8999999850344625-------7787744317666
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10005789882458999999999970022444210398777766544542234114521134555666778976624998
Q 002793 604 YTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVP 683 (880)
Q Consensus 604 YTHFTSPIRRY~DLivHR~L~a~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~~~~~~~~~~~~l~ 683 (880)
|||||||||||+||+|||||+++|.+++. |
T Consensus 335 YthfTSPIRRY~DLivHr~L~a~l~~~~~--------------------------~------------------------ 364 (469)
T 2r7d_A 335 YAQATSPMRRYLDLVVHQQLRAFLAGRDP--------------------------L------------------------ 364 (469)
T ss_dssp CCCCSCTTTBHHHHHHHHHHHHHHTTCCC--------------------------C------------------------
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC--------------------------C------------------------
T ss_conf 36077846603899999999999727999--------------------------9------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECCCEEEEE
Q ss_conf 25579999999889989999999999999999997613625996999976356799999558658999812048807998
Q 002793 684 CADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEW 763 (880)
Q Consensus 684 ~~~~l~~i~~~~N~r~~~Ar~A~r~s~~l~~~~~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~ 763 (880)
+.+.+..++.+||.+++.|++|||++.++|++.||+++.|..++|+|+.+. +.||+||++++..+ +
T Consensus 365 ~~~~l~~~~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~l~-----------~~~glV~v~~l~~d---~ 430 (469)
T 2r7d_A 365 SSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRR-----------GAQATLLIPDLAFD---V 430 (469)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE-----------TTEEEEEEGGGTEE---E
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE-----------CCEEEEEECCCCEE---E
T ss_conf 999999999999999999999999999999999987578978999999972-----------75799997778737---7
Q ss_pred ECCCCEEEEEEECCCCEEECCCCCEEEE
Q ss_conf 1344228986510233021289724786
Q 002793 764 LETTSTLVLSLCAHKRSFKRGGPGNYRA 791 (880)
Q Consensus 764 ~~~~~~Lv~~~~~~k~~~~~g~~~~~r~ 791 (880)
+.++.|++||++++++
T Consensus 431 ------------~~~~~~~lGd~V~V~v 446 (469)
T 2r7d_A 431 ------------QVNTPAAPGTALQVQF 446 (469)
T ss_dssp ------------EEECCCCTTCEEEEEE
T ss_pred ------------ECCCCCCCCCEEEEEE
T ss_conf ------------6188689899999999
No 5
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=77.05 Aligned_cols=80 Identities=6% Similarity=-0.042 Sum_probs=70.1
Q ss_pred HHHHHHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCEEEEEE-ECCCCEEECCCCCEEEE
Q ss_conf 99999761362599699997635679999955865899981204880799813442289865-10233021289724786
Q 002793 713 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSL-CAHKRSFKRGGPGNYRA 791 (880)
Q Consensus 713 ~~~~~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~Lv~~~-~~~k~~~~~g~~~~~r~ 791 (880)
|.|.|++.+.|++++|+|++|.+.|++|.++. .+||++|.+++.+++|+|++..+.+++.. +.+++.|++|+.+++|+
T Consensus 72 fk~~~f~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV 150 (218)
T 2ckz_B 72 FRAVVFKPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 (218)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEEEECCCCEEEECCC-CCCEEEECHHHCCCCCEECCCCCEEEEECCCCCCCEECCCCEEEEEE
T ss_conf 99999637799899999998855718999458-60469981887898768967686698542666786882899899999
Q ss_pred CE
Q ss_conf 10
Q 002793 792 LE 793 (880)
Q Consensus 792 ~d 793 (880)
..
T Consensus 151 ~~ 152 (218)
T 2ckz_B 151 ER 152 (218)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 6
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=70.40 Aligned_cols=78 Identities=5% Similarity=-0.014 Sum_probs=68.2
Q ss_pred HHHHHHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCEEEEEE------ECCCCEEECCCC
Q ss_conf 99999761362599699997635679999955865899981204880799813442289865------102330212897
Q 002793 713 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSL------CAHKRSFKRGGP 786 (880)
Q Consensus 713 ~~~~~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~Lv~~~------~~~k~~~~~g~~ 786 (880)
|.+.+++.+.|++++|+|+++.+.|++|.+. .+||.+|.+++.+++|+|++..+.+++.. +.+++.++.|+.
T Consensus 72 fk~~~f~p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~ 149 (203)
T 3ayh_B 72 FRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEE 149 (203)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCE
T ss_pred EEEEEECCCCCCEEEEEEEEEECCEEEEEEE--CCEEEEECHHHCCCCCEECCCCCEEEEECCCCCCCCCCCCEECCCCE
T ss_conf 9999972679989999999991147999971--85079984786898746976575489642555544467869828999
Q ss_pred CEEEEC
Q ss_conf 247861
Q 002793 787 GNYRAL 792 (880)
Q Consensus 787 ~~~r~~ 792 (880)
+++|+.
T Consensus 150 VrvrV~ 155 (203)
T 3ayh_B 150 IRFQIE 155 (203)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999999
No 7
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=1.00 E-value=1 Score=60.42 Aligned_cols=72 Identities=8% Similarity=0.087 Sum_probs=63.5
Q ss_pred HHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCEEECCCCCEEEEC
Q ss_conf 9761362599699997635679999955865899981204880799813442289865102330212897247861
Q 002793 717 LLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRAL 792 (880)
Q Consensus 717 ~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~Lv~~~~~~k~~~~~g~~~~~r~~ 792 (880)
.++-..|.+++|+|+++.+.|++|.+. .++|+||.+++.+++|.|++.++.+++ ++++..++.|+.+++|+.
T Consensus 76 v~~p~~Gev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d~~~~d~~~~~~~g--~~~~~~~~~Gd~VrvkV~ 147 (180)
T 4ayb_E 76 TYVPVVQEVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDDTLKYDNVRGIIFG--EKSKKVIQKGDKVRARVI 147 (180)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECSSSCCEEE--TTTCCCCCTTCEEEEEEE
T ss_pred EEECCCCCEEEEEEEEECCCEEEEEEC--CCCCEEEEEECCCCCCCCCHHCCEEEE--ECCCEEECCCCEEEEEEE
T ss_conf 664258979999996301430899977--855248752027875223501235888--515839979999999999
No 8
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=1.00 E-value=1 Score=59.49 Aligned_cols=59 Identities=10% Similarity=-0.057 Sum_probs=45.6
Q ss_pred HCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCEEECCCCCEEEEC
Q ss_conf 1362599699997635679999955865899981204880799813442289865102330212897247861
Q 002793 720 KKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRAL 792 (880)
Q Consensus 720 ~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~Lv~~~~~~k~~~~~g~~~~~r~~ 792 (880)
-+.|.+++|+|++|.++|++|.| ..++||+||++++.+. |.++ ....+++||.+++++.
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l-~~~~eGLVhiS~Lsd~-~v~d------------~~~~~~vGd~V~VkVi 710 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDI-GVHQDGLVHISALSEK-FVKD------------PYEVVKAGDIVKVKVM 710 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEEC-SSSSEEEEETTTSCSS-CCSC------------HHHHCCTTCCCCCBEE
T ss_pred CCCCCEEEEEEEEEECCCEEEEE-CCCCEEEEEHHHCCCC-CCCC------------HHHEECCCCEEEEEEE
T ss_conf 57998899999997047769996-7993799888974765-5478------------6324089998999999
No 9
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=58.47 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=59.2
Q ss_pred HHHHHHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCEEECCCCCEEEE
Q ss_conf 9999976136259969999763567999995586589998120488079981344228986510233021289724786
Q 002793 713 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 791 (880)
Q Consensus 713 ~~~~~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~Lv~~~~~~k~~~~~g~~~~~r~ 791 (880)
|.+.+++.+.|.+++|+|+++.+.|++|.+. .+||+||.+++ +++|+|++......+ +.++..++.|+.+++|+
T Consensus 75 f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l-~~~~~~d~~~~~~~~--~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 75 YRAVLWRPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLV-PPDMKFDPTANPPNY--SGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEEEEECCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGS-CTTCCCBSSSSSCBE--ESSSCEECSSCCEEEEE
T ss_pred EEEEEECCCCCCEEEEEEEEEECCEEEEEEC--CEEEEEEHHHC-CCCCCCCCCCCCCEE--ECCCCEECCCCEEEEEE
T ss_conf 9876602579989999999897053899927--82999999999-996310754453237--15882998999999999
No 10
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=1.00 E-value=1 Score=56.52 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=61.9
Q ss_pred HHHHHHHHCCCEEEEEEEEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCC--CEEEEEEECCCCEEECCCCCEEE
Q ss_conf 9999976136259969999763567999995586589998120488079981344--22898651023302128972478
Q 002793 713 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETT--STLVLSLCAHKRSFKRGGPGNYR 790 (880)
Q Consensus 713 ~~~~~lk~~~~~~~~avV~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~--~~Lv~~~~~~k~~~~~g~~~~~r 790 (880)
+.+.+++.+.|.+++|+|+++.+.|++|.+. .++|+||.+++ +++|.|++.. +.+++ +.++..++.||.+++|
T Consensus 72 ~~~~~~~~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l-~~~~~~d~~~~~~~~~~--~~~~~~~~~Gd~V~vk 146 (172)
T 2c35_B 72 YKAIVFRPFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSI-PSEMEFDPNSNPPCYKT--MDEDIVIQQDDEIRLK 146 (172)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGS-CTTEEEESSSSSCEEEE--TTSCSEEETTCEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEEEECCEEEEEEC--CEEEEEEHHHC-CCCCEECCCCCCCEEEE--CCCCEEECCCCEEEEE
T ss_conf 9999950799999999999893777999987--99999998998-99758987777347992--7987798799999999
Q ss_pred ECE
Q ss_conf 610
Q 002793 791 ALE 793 (880)
Q Consensus 791 ~~d 793 (880)
+.+
T Consensus 147 V~~ 149 (172)
T 2c35_B 147 IVG 149 (172)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
Done!