Query 002794
Match_columns 880
No_of_seqs 593 out of 4495
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 18:45:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002794.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1506-1510//hhsearch_pdb/002794hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 402.4 16.4 260 558-836 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 401.6 11.3 263 555-836 10-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 401.5 12.7 264 553-835 21-306 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 387.9 12.4 268 553-838 59-350 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 385.3 17.8 263 554-835 32-300 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 381.8 16.6 249 559-828 25-276 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 381.4 21.3 248 559-828 152-400 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 380.3 19.5 248 559-828 75-323 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 377.9 19.5 261 560-845 60-326 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 374.8 18.3 267 560-837 5-299 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.40 Aligned_cols=260 Identities=26% Similarity=0.426 Sum_probs=216.1
Q ss_pred HHHHHCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEE
Q ss_conf 99754160373571899999986------995999999047650457889999999984379985320020003651899
Q 002794 558 ATNNFCKKIGKGSFGSVYYGKMK------DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRIL 631 (880)
Q Consensus 558 ~~~~~~~~LG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~~l 631 (880)
..+.+.++||+|+||.||+|+++ +++.||||+++.......+.|.+|+++|++++|||||+++|+|.+....++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCE
Q ss_conf 998368999988861378------------99988989999999999988678551499972635999999322589939
Q 002794 632 VYEYMHNGTLRDRLHGSV------------NQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRA 699 (880)
Q Consensus 632 V~E~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NILl~~~~~~ 699 (880)
|||||++|+|.++++... ....++|..++.|+.|+|.||+|||+ ++|+||||||+|||++.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCCE
T ss_conf 99827999399999860754100122112457889999999999999999999840---884226666764898899968
Q ss_pred EEEEECCCCCCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHH
Q ss_conf 996203542355566-420014567766458664488988904688999999999992-999999668532000999998
Q 002794 700 KVSDFGLSRQAEEDL-THISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGAELNIVHWAR 777 (880)
Q Consensus 700 kL~DFGls~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~ellt-G~~P~~~~~~~~~~~l~~~~~ 777 (880)
||+|||+++...... ........||+.|||||++.+..++.++|||||||++|||+| |+.||......+ +...
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~~-- 272 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE---AIDC-- 272 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH---HHHH--
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH---HHHH--
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989999---9999--
Q ss_pred HHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 75404981000166345898988999999999852246999999999999998643321
Q 002794 778 SMIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKI 836 (880)
Q Consensus 778 ~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~~~~~ 836 (880)
+..+... ..+..++..+.+++.+||+.||++||||.||++.|+.+.+.
T Consensus 273 --i~~g~~~---------~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 273 --ITQGREL---------ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp --HHHTCCC---------CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred --HHCCCCC---------CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf --9808989---------98644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=401.57 Aligned_cols=263 Identities=27% Similarity=0.463 Sum_probs=217.1
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCE
Q ss_conf 99999754160373571899999986------995999999047650457889999999984379985320020003651
Q 002794 555 LEEATNNFCKKIGKGSFGSVYYGKMK------DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQ 628 (880)
Q Consensus 555 l~~~~~~~~~~LG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~ 628 (880)
+....+.+.++||+|+||.||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+.
T Consensus 10 I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 89 (299)
T 4asz_A 10 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP 89 (299)
T ss_dssp CCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred CCHHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCE
T ss_conf 48889298249820788299999987766677887999999677785899999999999985899888628799956998
Q ss_pred EEEEEEECCCCCHHHHHCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 899998368999988861378----------9998898999999999998867855149997263599999932258993
Q 002794 629 RILVYEYMHNGTLRDRLHGSV----------NQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMR 698 (880)
Q Consensus 629 ~~lV~E~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NILl~~~~~ 698 (880)
.++|||||++|+|.++++... ....++|..++.|+.|++.||+|||+ ++|+||||||+|||++.++.
T Consensus 90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~ 166 (299)
T 4asz_A 90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLL 166 (299)
T ss_dssp EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGC
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCC
T ss_conf 999998589996899998608642111235777889999999999999999999975---99046765776389879986
Q ss_pred EEEEEECCCCCCCCCCC-CEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHH
Q ss_conf 99962035423555664-20014567766458664488988904688999999999992-99999966853200099999
Q 002794 699 AKVSDFGLSRQAEEDLT-HISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGAELNIVHWA 776 (880)
Q Consensus 699 ~kL~DFGls~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~ellt-G~~P~~~~~~~~~~~l~~~~ 776 (880)
+||+|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |+.||...... .+..
T Consensus 167 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~---~~~~-- 241 (299)
T 4asz_A 167 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN---EVIE-- 241 (299)
T ss_dssp EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH---HHHH--
T ss_pred EEECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH---HHHH--
T ss_conf 89887300100678874166475134701038898707999703667788999999980899999998999---9999--
Q ss_pred HHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 875404981000166345898988999999999852246999999999999998643321
Q 002794 777 RSMIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKI 836 (880)
Q Consensus 777 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~~~~~ 836 (880)
.+..+.... .+..++..+.+++.+||+.+|++||+|+||++.|+++.+.
T Consensus 242 --~i~~~~~~~---------~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 242 --CITQGRVLQ---------RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp --HHHHTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --HHHCCCCCC---------CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf --998089889---------9741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=401.54 Aligned_cols=264 Identities=24% Similarity=0.415 Sum_probs=215.7
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCEECC
Q ss_conf 4699999754160373571899999986------995999999047650-457889999999984379985320020003
Q 002794 553 PELEEATNNFCKKIGKGSFGSVYYGKMK------DGKEVAVKIMADSCS-HRTQQFVTEVALLSRIHHRNLVPLIGYCEE 625 (880)
Q Consensus 553 ~~l~~~~~~~~~~LG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~g~~~~ 625 (880)
.++...+++|.++||+|+||.||+|++. +++.||||+++.... ...+.|.+|+.++++++|||||+++|+|.+
T Consensus 21 ~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~ 100 (308)
T 4gt4_A 21 KEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK 100 (308)
T ss_dssp CBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CCCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 22878888586691358884899999857765888869999998801496899999999999985899898773649988
Q ss_pred CCEEEEEEEECCCCCHHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 6518999983689999888613789-------------998898999999999998867855149997263599999932
Q 002794 626 EHQRILVYEYMHNGTLRDRLHGSVN-------------QKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNIL 692 (880)
Q Consensus 626 ~~~~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NIL 692 (880)
....++|||||++|+|.+++..... ...++|..++.|+.|||.||+|||+ ++|+||||||+|||
T Consensus 101 ~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NIL 177 (308)
T 4gt4_A 101 DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVL 177 (308)
T ss_dssp SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEE
T ss_conf 998899998189994999998627654333322111124689999999999999999999986---89977873623068
Q ss_pred CCCCCCEEEEEECCCCCCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 2589939996203542355566-420014567766458664488988904688999999999992-99999966853200
Q 002794 693 LDINMRAKVSDFGLSRQAEEDL-THISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGAEL 770 (880)
Q Consensus 693 l~~~~~~kL~DFGls~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~ellt-G~~P~~~~~~~~~~ 770 (880)
+++++.+||+|||+++...... ........||+.|||||++.+..++.++|||||||++|||+| |+.||.+....
T Consensus 178 l~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--- 254 (308)
T 4gt4_A 178 VYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--- 254 (308)
T ss_dssp ECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH---
T ss_pred ECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH---
T ss_conf 87999789887602023367774047345125776569899827999963000157999999996899999998999---
Q ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 09999987540498100016634589898899999999985224699999999999999864332
Q 002794 771 NIVHWARSMIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIK 835 (880)
Q Consensus 771 ~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~~~~ 835 (880)
.+.. .+..+.... .+..++..+.+++.+||+.+|++||+|+||++.|+....
T Consensus 255 ~~~~----~i~~~~~~~---------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 255 DVVE----MIRNRQVLP---------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp HHHH----HHHTTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred HHHH----HHHCCCCCC---------CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
T ss_conf 9999----998199899---------962036999999999758796579299999999985318
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=387.86 Aligned_cols=268 Identities=26% Similarity=0.406 Sum_probs=215.9
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEEEECC------CCEEEEEECCCCCH-HHHHHHHHHHHHHHHCC-CCCCCCCCCEEC
Q ss_conf 46999997541603735718999999869------95999999047650-45788999999998437-998532002000
Q 002794 553 PELEEATNNFCKKIGKGSFGSVYYGKMKD------GKEVAVKIMADSCS-HRTQQFVTEVALLSRIH-HRNLVPLIGYCE 624 (880)
Q Consensus 553 ~~l~~~~~~~~~~LG~G~fG~Vy~~~~~~------g~~vAvK~l~~~~~-~~~~~~~~E~~il~~l~-HpnIv~l~g~~~ 624 (880)
.|+....+++.+.||+|+||.||+|.+.. ++.||||+++.... ...+.|.+|+++|.+++ |||||+++|+|.
T Consensus 59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~ 138 (353)
T 4ase_A 59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT 138 (353)
T ss_dssp HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred CEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 17057995982098217895999999868885447759999997623586899999999999997579984877889999
Q ss_pred CC-CEEEEEEEECCCCCHHHHHCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf 36-51899998368999988861378-------------99988989999999999988678551499972635999999
Q 002794 625 EE-HQRILVYEYMHNGTLRDRLHGSV-------------NQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSN 690 (880)
Q Consensus 625 ~~-~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~N 690 (880)
+. ...++|||||++|+|.++|+... ....+++..++.++.|||.||+|||+ ++|+||||||+|
T Consensus 139 ~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDLK~~N 215 (353)
T 4ase_A 139 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARN 215 (353)
T ss_dssp CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGG
T ss_pred ECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCCCC
T ss_conf 46977999998389897999997435666543334101103568999999999999999876762---784357467211
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 32258993999620354235556642-0014567766458664488988904688999999999992-999999668532
Q 002794 691 ILLDINMRAKVSDFGLSRQAEEDLTH-ISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGA 768 (880)
Q Consensus 691 ILl~~~~~~kL~DFGls~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~ellt-G~~P~~~~~~~~ 768 (880)
||+++++.+||+|||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||.+.....
T Consensus 216 ILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~ 295 (353)
T 4ase_A 216 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE 295 (353)
T ss_dssp EEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH
T ss_pred EEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 30579997897965432224568872032540146665698999469999755374068999999818999999989899
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 0009999987540498100016634589898899999999985224699999999999999864332102
Q 002794 769 ELNIVHWARSMIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKIEK 838 (880)
Q Consensus 769 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~~~~~~~ 838 (880)
.+. ..+..+.... .+.....++.+++.+||+.||++|||+.||++.|+++++...
T Consensus 296 --~~~----~~i~~g~~~~---------~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 296 --EFC----RRLKEGTRMR---------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp --HHH----HHHHHTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred --HHH----HHHHCCCCCC---------CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf --999----9997389888---------886578999999999768696679399999999999998755
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=385.27 Aligned_cols=263 Identities=31% Similarity=0.507 Sum_probs=208.4
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEE
Q ss_conf 6999997541603735718999999869959999990476--50457889999999984379985320020003651899
Q 002794 554 ELEEATNNFCKKIGKGSFGSVYYGKMKDGKEVAVKIMADS--CSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRIL 631 (880)
Q Consensus 554 ~l~~~~~~~~~~LG~G~fG~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~~l 631 (880)
++....+.+.++||+|+||+||+|+++. .||||+++.. .....+.|.+|++++++++|||||+++|++.+ +..++
T Consensus 32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~i 108 (307)
T 3omv_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAI 108 (307)
T ss_dssp BCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEE
T ss_pred EECHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEE
T ss_conf 8747994984498208886899999899--68999997268999999999999999985899887469999978-95899
Q ss_pred EEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 99836899998886137899988989999999999988678551499972635999999322589939996203542355
Q 002794 632 VYEYMHNGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAE 711 (880)
Q Consensus 632 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NILl~~~~~~kL~DFGls~~~~ 711 (880)
|||||++|+|.++++.. ...+++..++.|+.|+|.||+|||+ ++|+||||||+|||+++++.+||+|||+|+...
T Consensus 109 VmEy~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~ 183 (307)
T 3omv_A 109 VTQWCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS 183 (307)
T ss_dssp EEECCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred EEECCCCCCHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf 99748998788987524--8999999999999999999999977---995278557899788899908994415754246
Q ss_pred CCC-CCEECCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 566-420014567766458664488---9889046889999999999929999996685320009999987540498100
Q 002794 712 EDL-THISSVARGTVGYLDPEYYGN---QQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVIS 787 (880)
Q Consensus 712 ~~~-~~~~~~~~gt~~y~APE~l~~---~~~s~~sDVwSlGviL~elltG~~P~~~~~~~~~~~l~~~~~~~~~~~~~~~ 787 (880)
... ........||+.|||||++.+ ..++.++|||||||++|||+||+.||....... .+ ...+..+...
T Consensus 184 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~--~~----~~~~~~~~~~- 256 (307)
T 3omv_A 184 RWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD--QI----IFMVGRGYAS- 256 (307)
T ss_dssp ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HH----HHHHHTTCCC-
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HH----HHHHHCCCCC-
T ss_conf 6776403156446877249878614689987868775728999999997889989999699--99----9999658888-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 016634589898899999999985224699999999999999864332
Q 002794 788 IVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIK 835 (880)
Q Consensus 788 ~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~~~~ 835 (880)
|.+ ...+..++..+.+++.+||+.+|++||||.||++.|+.+.+
T Consensus 257 ---p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 257 ---PDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp ---CCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred ---CCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf ---872-00354456999999999757797689098999999999745
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=381.82 Aligned_cols=249 Identities=26% Similarity=0.392 Sum_probs=206.3
Q ss_pred HHHHCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEE
Q ss_conf 9754160373571899999986-9959999990476--504578899999999843799853200200036518999983
Q 002794 559 TNNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADS--CSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEY 635 (880)
Q Consensus 559 ~~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~~lV~E~ 635 (880)
.|++.+.||+|+||.||+|+.+ +|+.||+|++... .....+.+.+|++++++++|||||++++++.+.+..++||||
T Consensus 25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy 104 (350)
T 4b9d_A 25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDY 104 (350)
T ss_dssp CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 55884797027793999999889998999999865878979999999999999877998989199999989999999948
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 68999988861378999889899999999999886785514999726359999993225899399962035423555664
Q 002794 636 MHNGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEEDLT 715 (880)
Q Consensus 636 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NILl~~~~~~kL~DFGls~~~~~~~~ 715 (880)
|+||+|.+++... ....+++..++.|+.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.......
T Consensus 105 ~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 180 (350)
T 4b9d_A 105 CEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE 180 (350)
T ss_dssp CTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH
T ss_pred CCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCCC
T ss_conf 8998399999973-89999789999999999999999998---9915135978997987899989764652144068854
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 20014567766458664488988904688999999999992999999668532000999998754049810001663458
Q 002794 716 HISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVLIG 795 (880)
Q Consensus 716 ~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~elltG~~P~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~ 795 (880)
......||+.|||||++.+..|+.++||||+||++|||++|+.||.+.+.. +....... +.... +.
T Consensus 181 -~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~------~~~~~i~~-~~~~~-----~~- 246 (350)
T 4b9d_A 181 -LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK------NLVLKIIS-GSFPP-----VS- 246 (350)
T ss_dssp -HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHH-TCCCC-----CC-
T ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHHC-CCCCC-----CC-
T ss_conf -101457883603999987999895999999999999999787998996999------99999980-89999-----97-
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 989889999999998522469999999999999
Q 002794 796 NVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVL 828 (880)
Q Consensus 796 ~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~ 828 (880)
......+.+++.+||+.||++||++.|+++
T Consensus 247 ---~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 247 ---LHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp ---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---CCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf ---557999999999985589667908999963
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=381.41 Aligned_cols=248 Identities=25% Similarity=0.345 Sum_probs=205.6
Q ss_pred HHHHCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEECC
Q ss_conf 9754160373571899999986-995999999047650457889999999984379985320020003651899998368
Q 002794 559 TNNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMH 637 (880)
Q Consensus 559 ~~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~~lV~E~~~ 637 (880)
.|++.++||+|+||.||+|+.+ +|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+..++|||||+
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~ 231 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 231 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 43861696248184899999999998999999862554689999999999985799898716899998999999996989
Q ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 99998886137899988989999999999988678551499972635999999322589939996203542355566420
Q 002794 638 NGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEEDLTHI 717 (880)
Q Consensus 638 ~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NILl~~~~~~kL~DFGls~~~~~~~~~~ 717 (880)
||+|.+++.. ..+++..+..++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+|+........
T Consensus 232 gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~- 303 (423)
T 4fie_A 232 GGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR- 303 (423)
T ss_dssp TEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC-
T ss_pred CCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC-
T ss_conf 9828988761----698999999999999999999998---89044657877789858999898037265477788764-
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf 01456776645866448898890468899999999999299999966853200099999875404981000166345898
Q 002794 718 SSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVLIGNV 797 (880)
Q Consensus 718 ~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~elltG~~P~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 797 (880)
.....||+.|||||++.+..|+.++||||+||++|||++|+.||.+..... ... .+..+.... +..
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~----~i~~~~~~~-----~~~-- 369 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMK----MIRDNLPPR-----LKN-- 369 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHH----HHHHSCCCC-----CSC--
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHH----HHHCCCCCC-----CCC--
T ss_conf 346664747279999779999968999999999999997879989869999---999----997279988-----765--
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9889999999998522469999999999999
Q 002794 798 KIESIWRIAEVAIQCVEQRGFSRPKMQEIVL 828 (880)
Q Consensus 798 ~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~ 828 (880)
.......+.+++.+||+.||++||++.|+++
T Consensus 370 ~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 370 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 0129999999999986789568909999960
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=380.28 Aligned_cols=248 Identities=24% Similarity=0.334 Sum_probs=205.4
Q ss_pred HHHHCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEECC
Q ss_conf 9754160373571899999986-995999999047650457889999999984379985320020003651899998368
Q 002794 559 TNNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMH 637 (880)
Q Consensus 559 ~~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~~lV~E~~~ 637 (880)
.|++.++||+|+||.||+|+.+ +|+.||+|++........+.+.+|+++|+.++|||||++++++.+.+..++|||||+
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 154 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 154 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred HCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 53870796027282999999989998999999852765689999999999986799899919999998999999996989
Q ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 99998886137899988989999999999988678551499972635999999322589939996203542355566420
Q 002794 638 NGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEEDLTHI 717 (880)
Q Consensus 638 ~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NILl~~~~~~kL~DFGls~~~~~~~~~~ 717 (880)
+|+|.+++.. ..+++..+..++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+|+........
T Consensus 155 gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~- 226 (346)
T 4fih_A 155 GGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR- 226 (346)
T ss_dssp TEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-
T ss_pred CCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC-
T ss_conf 9808999871----898999999999999999999998---88355627889978879998899027575366788775-
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf 01456776645866448898890468899999999999299999966853200099999875404981000166345898
Q 002794 718 SSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVLIGNV 797 (880)
Q Consensus 718 ~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~elltG~~P~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 797 (880)
.....||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+ .... +..+.....- .
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~~----i~~~~~~~~~-------~ 292 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMKM----IRDNLPPRLK-------N 292 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHH----HHHSSCCCCS-------C
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHH----HHCCCCCCCC-------C
T ss_conf 346562758279999779999968999999999999997879989859999---9999----9717999887-------5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9889999999998522469999999999999
Q 002794 798 KIESIWRIAEVAIQCVEQRGFSRPKMQEIVL 828 (880)
Q Consensus 798 ~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~ 828 (880)
.......+.+++.+||+.||++|||+.|+++
T Consensus 293 ~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 293 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 0229999999999986799568909999960
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=377.85 Aligned_cols=261 Identities=24% Similarity=0.269 Sum_probs=210.8
Q ss_pred HHHCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEECCC
Q ss_conf 754160373571899999986-9959999990476504578899999999843799853200200036518999983689
Q 002794 560 NNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHN 638 (880)
Q Consensus 560 ~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~~lV~E~~~~ 638 (880)
+++.++||+|+||.||+|+.+ +|+.||+|+++... ...+|+.+++.++|||||++++++.+.+..++||||++|
T Consensus 60 ~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 134 (336)
T 4g3f_A 60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEG 134 (336)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred EEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 176868513878099999988999899999978888-----699999999857998999399999989999999966599
Q ss_pred CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCC-
Q ss_conf 99988861378999889899999999999886785514999726359999993225899-3999620354235556642-
Q 002794 639 GTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINM-RAKVSDFGLSRQAEEDLTH- 716 (880)
Q Consensus 639 gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LHs~~~~~iiH~DLkp~NILl~~~~-~~kL~DFGls~~~~~~~~~- 716 (880)
|+|.++++. ...+++..+..++.|++.||+|||+ ++|+||||||+|||++.++ .+||+|||+|+........
T Consensus 135 g~L~~~l~~---~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~ 208 (336)
T 4g3f_A 135 GSLGQLIKQ---MGCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208 (336)
T ss_dssp CBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred CCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCC
T ss_conf 869999987---6999999999999999999999998---8904261677887995899979996278776856787654
Q ss_pred ---EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf ---00145677664586644889889046889999999999929999996685320009999987540498100016634
Q 002794 717 ---ISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVL 793 (880)
Q Consensus 717 ---~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGviL~elltG~~P~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l 793 (880)
......||+.|||||++.+..++.++||||+||++|||++|+.||.......... . .........
T Consensus 209 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~--~----i~~~~~~~~------ 276 (336)
T 4g3f_A 209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL--K----IASEPPPIR------ 276 (336)
T ss_dssp -----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH--H----HHHSCCGGG------
T ss_pred CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH--H----HHCCCCCCH------
T ss_conf 0221785455802008999889998908999999999999997869989989999999--9----980899800------
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5898988999999999852246999999999999998643321028998656
Q 002794 794 IGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKIEKGGDQKFS 845 (880)
Q Consensus 794 ~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~~~~~~~~~~~~~~ 845 (880)
..+......+.+++.+||+.||++|||+.|+++.|...+.....-...|-
T Consensus 277 --~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~ 326 (336)
T 4g3f_A 277 --EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWK 326 (336)
T ss_dssp --GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSS
T ss_pred --HCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf --25866799999999997628976895999999999999754432169876
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=374.79 Aligned_cols=267 Identities=25% Similarity=0.384 Sum_probs=202.7
Q ss_pred HHHCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCC----EEEEEEEE
Q ss_conf 75416037357189999998699599999904765045788999999998437998532002000365----18999983
Q 002794 560 NNFCKKIGKGSFGSVYYGKMKDGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEH----QRILVYEY 635 (880)
Q Consensus 560 ~~~~~~LG~G~fG~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~----~~~lV~E~ 635 (880)
+.+.++||+|+||.||+|+++ |+.||||+++... .....+..|+..+.+++|||||+++|+|.+.+ ..++||||
T Consensus 5 i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey 82 (303)
T 3hmm_A 5 IVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY 82 (303)
T ss_dssp EEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred EEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf 999789840899399999999-9899999988313-36699999999986089998870999998468872378877517
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEECCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 689999888613789998898999999999998867855149-----997263599999932258993999620354235
Q 002794 636 MHNGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGC-----NPGIIHRDVKSSNILLDINMRAKVSDFGLSRQA 710 (880)
Q Consensus 636 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LHs~~-----~~~iiH~DLkp~NILl~~~~~~kL~DFGls~~~ 710 (880)
|++|+|.++++. ..++|..+.+++.|++.||+|||+.+ +++|+||||||+|||++.++.+||+|||+++..
T Consensus 83 ~~~gsL~~~l~~----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 83 HEHGSLFDYLNR----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp CTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred CCCCCHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCC
T ss_conf 899968999975----7999899999999999999999985240047898762467842089988997899847987455
Q ss_pred CCCCCC---EECCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------CCCH
Q ss_conf 556642---00145677664586644889------88904688999999999992999999668532---------0009
Q 002794 711 EEDLTH---ISSVARGTVGYLDPEYYGNQ------QLTEKSDVYSFGVVLLELISGKKPVSVEDFGA---------ELNI 772 (880)
Q Consensus 711 ~~~~~~---~~~~~~gt~~y~APE~l~~~------~~s~~sDVwSlGviL~elltG~~P~~~~~~~~---------~~~l 772 (880)
...... ......||+.|||||++.+. .++.++|||||||++|||+||..|+....... ....
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~ 238 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV 238 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred CCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCHH
T ss_conf 67777322104642466462698884565455677657067666479999999878998776652235310025454309
Q ss_pred HHHHHHHHCCCCEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999987540498100016634589-89889999999998522469999999999999986433210
Q 002794 773 VHWARSMIKKGDVISIVDPVLIGN-VKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKIE 837 (880)
Q Consensus 773 ~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~~~~~~ 837 (880)
.. +...+..+. ++|.+... ...+.+..+.+++.+||+.||++||||.||++.|+++.+.+
T Consensus 239 ~~-~~~~~~~~~----~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 239 EE-MRKVVCEQK----LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp HH-HHHHHTTSC----CCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HH-HHHHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99-999875025----79988765566589999999999976059757959999999999889875
Done!