BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002795
(880 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570,
chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2
Length = 798
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/698 (62%), Positives = 547/698 (78%), Gaps = 20/698 (2%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ K G +VG PWE IER+K ++L S +E + LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSAGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVLDDDV + K E+ P KRWR+E EA+RVLVDRLS RE+ K
Sbjct: 143 KELKKILEKDLRWVLDDDVDVEEFDLDK--EFDPAKRWRNEGEAVRVLVDRLSGREINEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVR+MNQSGL FTE QMLK++ LG K SW+QA +V+ WVY K ++ L+SRFVYTK
Sbjct: 201 HWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVYSDKKRKHLRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IFN ML D LYPD+AAYH +AVTLGQ GLLKEL+K+IERMRQK
Sbjct: 261 LLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K KN+ +KNWDPVLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR 413
LAMEVML+SGK+D VH+FFRKM SGEA A+TYKVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 414 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 473
GV+GT SVYYELACCLCNNGRW DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533
C++IFQ+MKD C+PNIGT N MLKVY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 534 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEH 593
P+EYTYS MLEASA + QWEYFE+VY+ M LSG Q+DQTKHA +L+EASRAGK LLEH
Sbjct: 551 VPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEH 610
Query: 594 AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 653
AFD++LE GEIPHPLFFTE+L A + ++++A+ LIN +A A F I+E +WT+LFE ++
Sbjct: 611 AFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALASFQISEEEWTDLFEEHQ 670
Query: 654 DRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 691
D +++D L KL + L C+ SE TVSNLS++L + C
Sbjct: 671 DWLTQDNLHKLSDHLIECDYV-SEPTVSNLSKSLKSRC 707
>sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610,
chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2
SV=1
Length = 1006
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/503 (38%), Positives = 296/503 (58%), Gaps = 39/503 (7%)
Query: 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVY 217
I L L+ ++ W+F + + + + +T+ +++L+ LG G+WR+ + V++W+
Sbjct: 437 IEKLAKVLNGADINMPEWQFSKAIRSAKIRYTDYTVMRLIHFLGKLGNWRRVLQVIEWLQ 496
Query: 218 GLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277
+ K R +YT L +LGK+ RP EAL +F+ ML + YPD+ AY S+AVTLGQ
Sbjct: 497 RQDRYKSNKIRIIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAYRSIAVTLGQA 556
Query: 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337
G +KEL +I+ MR P K+ K + WDP LEPD+VVYNAVLNACV QW+G FWV
Sbjct: 557 GHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQRKQWEGAFWVL 616
Query: 338 KQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397
+QL++ G KPS TYGL MEVML KY+LVHEFFRKM KS AL Y+VLV W+E
Sbjct: 617 QQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQKSS-IPNALAYRVLVNTLWKE 675
Query: 398 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM--------LVVEKIKSLR 449
GK +EAV V +ME RG+VG+A++YY+LA CLC+ GR + + +V++ I++L
Sbjct: 676 GKSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEGLNMVNFVNPVVLKLIENLI 735
Query: 450 H-------------------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIG 490
+ +KPL +T+TGLI + +D G+I + IF MK C PN+
Sbjct: 736 YKADLVHTIQFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLV 795
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTR-----ANSSGYTFLSGDGAPLKPDEYTYSSMLE 545
T N MLK Y + +F +A+ELF++ + NSS + + + PD YT+++ML+
Sbjct: 796 TCNIMLKAYLQGGLFEEARELFQKMSEDGNHIKNSSDFE------SRVLPDTYTFNTMLD 849
Query: 546 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 605
A +W+ F Y Y+ M G + +H +++EASRAGK ++E ++ + + IP
Sbjct: 850 TCAEQEKWDDFGYAYREMLRHGYHFNAKRHLRMVLEASRAGKEEVMEATWEHMRRSNRIP 909
Query: 606 HPLFFTEMLIQAIVQSNYEKAVA 628
E + + + ++ A++
Sbjct: 910 PSPLIKERFFRKLEKGDHISAIS 932
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 189/449 (42%), Gaps = 39/449 (8%)
Query: 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248
T ++L LKGLG + A+ DW KD + + V ++++LGK GR A
Sbjct: 134 TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAA 193
Query: 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ---------------- 292
+FN + ED D+ +Y S+ G +E V + ++M +
Sbjct: 194 NMFNGLQED-GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNV 252
Query: 293 -----KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
P +I ++ K + PD YN ++ C + VF++++ +G
Sbjct: 253 FGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSY 312
Query: 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407
TY ++V +S + + +M +G + +TY L+ A+ +G ++EA+
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 408 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 467
M ++G Y L G+ + AM + E++++ KP TF I +
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN-AGCKPNICTFNAFIKMYGN 431
Query: 468 GGHIDDCISIFQHMKDHC--EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 525
G + + IF + + C P+I T N +L V+ +N M S+ +F+E RA G+
Sbjct: 432 RGKFTEMMKIFDEI-NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFV- 486
Query: 526 LSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA 585
P+ T+++++ A + +E VY+ M +G D + + +L +R
Sbjct: 487 ---------PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537
Query: 586 GKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
G E + + P+ L + +L
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLL 566
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/462 (19%), Positives = 183/462 (39%), Gaps = 71/462 (15%)
Query: 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
+ Y LL + GK+ RP EA+++ N M+ + P I Y+S+ + G+L E ++L
Sbjct: 314 KVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 288 ERMRQKPSK--------------------RIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
+M +K +K ++ + + +P++ +NA +
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNR 432
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387
++ + +F ++ GL P T+ + V Q+G V F++M ++G T+
Sbjct: 433 GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492
Query: 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447
L+ A+ G +A+ R M GV S Y + L G W+ + V+ +++
Sbjct: 493 NTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED 552
Query: 448 LRHSKPLEITFTGLIISSMDGGHIDDCISI------------------------------ 477
R KP E+T+ L+ + +G I S+
Sbjct: 553 GR-CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLP 611
Query: 478 -----FQHMKDHC-EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 531
F +K+ P+I T+N+M+ +Y R M +KA + + G+T
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLD---YMKERGFT------- 661
Query: 532 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLL 591
P TY+S++ + + + E + + + G + D + ++ R +
Sbjct: 662 ---PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 592 EHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633
F + +G +P + + + S +E+A+ ++ M
Sbjct: 719 SRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/403 (20%), Positives = 155/403 (38%), Gaps = 43/403 (10%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL G G AMS+ + + K ++ + + + + G G+ E ++IF+ +
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICT---FNAFIKMYGNRGKFTEMMKIFD-EI 445
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---PSKRIKN------------ 300
C L PDI ++++ GQ G+ E+ + + M++ P + N
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505
Query: 301 -----MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
++R+ D + PDL YN VL A W+ V ++ KP+ TY
Sbjct: 506 EQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSL 565
Query: 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415
+ + L+H ++ A+ K LV + + EA A +++RG
Sbjct: 566 LHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGF 625
Query: 416 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII---SSMDGGHID 472
+ + A V++ +K R P T+ L+ S D G +
Sbjct: 626 SPDITTLNSMVSIYGRRQMVAKANGVLDYMKE-RGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 473 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 532
+ + + + +P+I + N ++ Y RN A +F E +
Sbjct: 685 EILR--EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSG------------- 729
Query: 533 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 575
+ PD TY++ + + A +E V + M GC+ +Q +
Sbjct: 730 IVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTY 772
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 113/251 (45%), Gaps = 28/251 (11%)
Query: 389 VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 448
+++ +EG+++ A +++ G Y L N+GR+++A+ V +K++
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE- 236
Query: 449 RHSKPLEITFTGLI-ISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFS 506
KP IT+ ++ + G + S+ + MK D P+ T N ++ R +
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS 566
+A ++FEE A G+++ D+ TY+++L+ +H+ + V M L+
Sbjct: 297 EAAQVFEEMKAA---GFSY----------DKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343
Query: 567 GCQLDQTKHAWLLVEASRAGKCHLLEHAF---DSLLEAGEIPHPLFFTEMLIQAIVQSNY 623
G + L+ +R G +L+ A + + E G P +T +L S +
Sbjct: 344 GFSPSIVTYNSLISAYARDG---MLDEAMELKNQMAEKGTKPDVFTYTTLL------SGF 394
Query: 624 EKAVALINAMA 634
E+A + +AM+
Sbjct: 395 ERAGKVESAMS 405
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 16/220 (7%)
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
L+ + K EA R F+ L++ PDI +S+ G+ ++ + +++ M+++
Sbjct: 600 LVLVCSKCDLLPEAERAFS-ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKER 658
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P + YN+++ S + + +++ G+KP +Y
Sbjct: 659 G---------------FTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN 703
Query: 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR 413
+ ++ + F +M SG +TY + ++ + EA+ VR M +
Sbjct: 704 TVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKH 763
Query: 414 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 453
G + Y + C R +A L VE +++L P
Sbjct: 764 GCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/432 (24%), Positives = 192/432 (44%), Gaps = 41/432 (9%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
VLV+ + E+ +T + F + +S L+ T+ ++ L+KGL D G W +A+ + +W+
Sbjct: 110 VLVNSIVEQPLTGLSRFFDSV--KSELLRTD--LVSLVKGLDDSGHWERAVFLFEWLVLS 165
Query: 220 KDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPDIAAYHSVAVTLGQV 277
+ LK V + ILG+ + A ++ + + L++ L D+ AY ++ +
Sbjct: 166 SNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLL--DVRAYTTILHAYSRT 223
Query: 278 GLLKELVKLIERMRQ-KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-SHQWKGVFW 335
G ++ + L ERM++ PS P LV YN +L+ W+ +
Sbjct: 224 GKYEKAIDLFERMKEMGPS----------------PTLVTYNVILDVFGKMGRSWRKILG 267
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
V ++R GLK T + + G EFF ++ G G +TY L++ F
Sbjct: 268 VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
+ G EA++ ++ ME+ + Y EL G ++A V+E + + P
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK-KGVMPNA 386
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514
IT+T +I + G D+ + +F MK+ C PN T NA+L + + S++ E+ +
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKK---SRSNEMIKM 443
Query: 515 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 574
S+G + P+ T+++ML ++ V++ M G + D+
Sbjct: 444 LCDMKSNGCS----------PNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493
Query: 575 HAWLLVEASRAG 586
L+ R G
Sbjct: 494 FNTLISAYGRCG 505
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/440 (20%), Positives = 171/440 (38%), Gaps = 34/440 (7%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL+ G G + +A+SVL +++ Y +L+A +AG EA + +M
Sbjct: 322 LLQVFGKAGVYTEALSVLKE---MEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT 378
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ + P+ Y +V G+ G E +KL M++ P+
Sbjct: 379 KK-GVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV---------------PNTC 422
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375
YNAVL+ + + + ++ +G P+ AT+ + + G V+ FR+M
Sbjct: 423 TYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREM 482
Query: 376 AKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435
G T+ L+ A+ G +A M + G + Y L L G W
Sbjct: 483 KSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDW 542
Query: 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNA 494
+ V+ +KS + KP E +++ ++ GG+ I +K+ P+ +
Sbjct: 543 RSGENVISDMKS-KGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRT 601
Query: 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 554
+L + + ++ F T GY KPD ++SML + ++
Sbjct: 602 LLLANFKCRALAGSERAF---TLFKKHGY----------KPDMVIFNSMLSIFTRNNMYD 648
Query: 555 YFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
E + + + G D + L+ R G+C E +L ++ P + + ++
Sbjct: 649 QAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVI 708
Query: 615 IQAIVQSNYEKAVALINAMA 634
+ ++AV +++ M
Sbjct: 709 KGFCRRGLMQEAVRMLSEMT 728
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/436 (18%), Positives = 170/436 (38%), Gaps = 49/436 (11%)
Query: 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237
+ +M + G+M ++ G G +A+ + Y +K+ + + Y +L++
Sbjct: 374 IEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF---YSMKEAGCVPNTCTYNAVLSL 430
Query: 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ----- 292
LGK R +E +++ M + P+ A ++++ G G+ K + ++ M+
Sbjct: 431 LGKKSRSNEMIKMLCDMKSN-GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEP 489
Query: 293 -------------------KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGV 333
SK M R ++ + YNA+LNA W+
Sbjct: 490 DRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV----TTYNALLNALARKGDWRSG 545
Query: 334 FWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA-LTYKVLVR 392
V ++ G KP+ +Y L ++ + G Y L E K G+ + + + L+
Sbjct: 546 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNY-LGIERIENRIKEGQIFPSWMLLRTLLL 604
Query: 393 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 452
A ++ + + A ++ G ++ + N + A ++E I+ S
Sbjct: 605 ANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSP 664
Query: 453 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 511
L +T+ L+ + G I + + K +P++ + N ++K + R + +A +
Sbjct: 665 DL-VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRM 723
Query: 512 FEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 571
E T ++P +TY++ + + E V + MA + C+ +
Sbjct: 724 LSEMTERG-------------IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPN 770
Query: 572 QTKHAWLLVEASRAGK 587
+ ++ RAGK
Sbjct: 771 ELTFKMVVDGYCRAGK 786
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 24/293 (8%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL L KG WR +V+ +K K + Y+ +L K G RI N +
Sbjct: 532 LLNALARKGDWRSGENVIS---DMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ-KPSKRIKNMHRKNWDPVLEPDL 314
E ++P LL+ L+ + R S+R + +K+ +PD+
Sbjct: 589 EG-QIFPSWM-------------LLRTLLLANFKCRALAGSERAFTLFKKHG---YKPDM 631
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374
V++N++L+ ++ + + + +R+ GL P TY M++ ++ G+ E +
Sbjct: 632 VIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691
Query: 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 434
+ KS ++Y +++ F G + EAV + M +RG+ Y G
Sbjct: 692 LEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751
Query: 435 WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK--DHC 485
+ + V+E + +P E+TF ++ G + + +K D C
Sbjct: 752 FAEIEDVIECMAK-NDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPC 803
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/391 (20%), Positives = 165/391 (42%), Gaps = 20/391 (5%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+P+ V +N +++ ++ + ++ G +P TYG+ + + + G DL
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
KM + G L Y ++ + +++A+ + ME +G+ Y L CLC
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
N GRW DA ++ + R P TF+ LI + + G + + ++ M K +P+I
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T ++++ + +D +AK++FE S + F PD TY+++++
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMV----SKHCF---------PDVVTYNTLIKGFCK 408
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ E V++ M+ G + + L+ +AG C + + F ++ G P+ +
Sbjct: 409 YKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Query: 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 669
+ +L EKA+ + + + T + + E K+E + C
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG---MCKAGKVEDGWDLFC 525
Query: 670 NCNAASSEITVSNLSRALHALCR--SEKERD 698
N + + V + + CR S++E D
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 68/433 (15%)
Query: 243 RPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301
+ EA+ + + M+ + C PD+ Y V L + G L+ +M Q
Sbjct: 201 KASEAMALIDRMVAKGCQ--PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGK------- 251
Query: 302 HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ 361
LEP +++YN +++ +FK++ G++P+ TY + +
Sbjct: 252 --------LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303
Query: 362 SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 421
G++ M + T+ L+ AF +EGK+ EA M +R + +
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVT 363
Query: 422 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM 481
Y L C + R +A + E + S +H P +T+ LI +++ + +F+ M
Sbjct: 364 YSSLINGFCMHDRLDEAKQMFEFMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 422
Query: 482 ------------------------------------KDHCEPNIGTVNAMLKVYSRNDMF 505
D PNI T N +L +N
Sbjct: 423 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482
Query: 506 SKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 565
KA +FE R+ ++P YTY+ M+E A + E ++ ++L
Sbjct: 483 EKAMVVFEYLQRSK-------------MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 529
Query: 566 SGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEK 625
G + D + ++ R G + F + E G +P+ + ++ + + E
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 589
Query: 626 AVALINAMAYAPF 638
+ LI M F
Sbjct: 590 SAELIKEMRSCGF 602
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 122/272 (44%), Gaps = 24/272 (8%)
Query: 222 KRDLKSRFV-YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS----------- 269
KR + V Y+ L+ R EA ++F M+ + +PD+ Y++
Sbjct: 354 KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK-HCFPDVVTYNTLIKGFCKYKRV 412
Query: 270 -----VAVTLGQVGLLKELVK---LIERMRQKPSKRI-KNMHRKNWDPVLEPDLVVYNAV 320
V + Q GL+ V LI+ + Q + + + ++ + P+++ YN +
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE 380
L+ + + + VF+ L++S ++P+ TY + +E M ++GK + + F ++ G
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
Query: 381 AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440
+ Y ++ F +G EA A + M++ G + + Y L +G + +
Sbjct: 533 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 592
Query: 441 VVEKIKSLRHSKPLEITFTGLIISSMDGGHID 472
++++++S + + + GL+ + + G +D
Sbjct: 593 LIKEMRSCGFAG--DASTIGLVTNMLHDGRLD 622
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 17/210 (8%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ L +AG A IF M+ D + P+I Y+++ L + G L++ + + E +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
++ +EP + YN ++ + + + + +F L G+KP
Sbjct: 493 QRSK---------------MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 537
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
Y + + G + F++M + G + Y L+RA +G + ++ M
Sbjct: 538 AYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAML 440
G G AS L + ++GR + L
Sbjct: 598 RSCGFAGDAST-IGLVTNMLHDGRLDKSFL 626
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/243 (18%), Positives = 100/243 (41%), Gaps = 15/243 (6%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
P ++ ++ +L+A +++ V + +Q++ G+ + TY + + + + L
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
KM K G +T L+ + +I+EAVA V M G + L L
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIG 490
+ + +AM +++++ + + +P +T+ ++ G D ++ M + EP +
Sbjct: 199 HNKASEAMALIDRMVA-KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL 257
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550
N ++ + A LF+E + ++P+ TYSS++
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEM-------------ETKGIRPNVVTYSSLISCLCNY 304
Query: 551 HQW 553
+W
Sbjct: 305 GRW 307
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
+F ++ KS PS + + + + K+D+V +M G TY +L+ F
Sbjct: 68 LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 127
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
++ A+A + M + G L C++ R +A+ +V+++ + +P
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM-FVTGYQPNT 186
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGT----VNAMLK 497
+TF LI + +++ M C+P++ T VN + K
Sbjct: 187 VTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 24/343 (6%)
Query: 157 AIRVLVDRLSEREMTAKNWKFVRIM-NQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDW 215
++ V+V + F++ M NQ G + L+ GL G + A+ ++D
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 216 VYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTL 274
+ L++ D + Y +++ L K G EA+ + + M+ DC+ P+ Y+++ TL
Sbjct: 321 M--LQEGYD-PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS--PNTVTYNTLISTL 375
Query: 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334
+ ++E +L + K + PD+ +N+++ + +
Sbjct: 376 CKENQVEEATELARVLTSKG---------------ILPDVCTFNSLIQGLCLTRNHRVAM 420
Query: 335 WVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF 394
+F+++R G +P TY + ++ + GK D ++M SG A +TY L+ F
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Query: 395 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 454
+ K EA ME GV + Y L LC + R +DA +++++ + KP
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM-IMEGQKPD 539
Query: 455 EITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAML 496
+ T+ L+ GG I I Q M + CEP+I T ++
Sbjct: 540 KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 129/299 (43%), Gaps = 24/299 (8%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
PD +N ++N + K + + + G P TY + + + G+ E
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
+M + +TY L+ +E ++ EA R + +G++ + L LC
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIG 490
+ AM + E+++S + +P E T+ LI S G +D+ +++ + M+ C ++
Sbjct: 413 TRNHRVAMELFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI 471
Query: 491 TVNAMLKVYSRNDMFSKAKELFEE-----TTRANSSGYTFLSG--------DGAPL---- 533
T N ++ + + + +A+E+F+E +R + + T + G D A L
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 534 -----KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
KPD+YTY+S+L + + + M +GC+ D + L+ +AG+
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/430 (19%), Positives = 167/430 (38%), Gaps = 47/430 (10%)
Query: 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254
++L LG GS+ +L+ +K R + L+ + E L + + M
Sbjct: 88 EILLRLGRSGSFDDMKKILE---DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWM 144
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
+++ L PD Y+ + L LK L+E I + W ++PD+
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLK----LVE---------ISHAKMSVWG--IKPDV 189
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374
+N ++ A +HQ + + + + GL P T+ M+ ++ G D +
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249
Query: 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM-EQRGVVGTASVYYELACCLCNNG 433
M + G + ++ V+V F +EG++ +A+ ++ M Q G + L LC G
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 434 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTV 492
+ A+ +++ + + P T+ +I G + + + + M C PN T
Sbjct: 310 HVKHAIEIMDVMLQEGYD-PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 493 NAMLKVYSRNDMFSKAKELFEETT------------------------RANSSGYTFLSG 528
N ++ + + +A EL T R + +
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
G +PDE+TY+ ++++ + + + + K M LSGC + L+ +A K
Sbjct: 429 KGC--EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486
Query: 589 HLLEHAFDSL 598
E FD +
Sbjct: 487 REAEEIFDEM 496
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/489 (19%), Positives = 187/489 (38%), Gaps = 73/489 (14%)
Query: 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291
KLL L ALR+FNL + N P+ A Y + + LG+ G ++ K++E M+
Sbjct: 51 VKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMK 110
Query: 292 QKPSKRIKN------------------MHRKNW---DPVLEPDLVVYNAVLNACVPSHQW 330
+ + + +W + L+PD YN +LN V +
Sbjct: 111 SSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSL 170
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390
K V ++ G+KP +T+ + ++ + ++ + M G T+ +
Sbjct: 171 KLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230
Query: 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRH 450
++ + EEG ++ A+ M + G + + C GR +DA+ ++++ +
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290
Query: 451 SKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAK 509
P + TF L+ GH+ I I M ++ +P++ T N+++ + +A
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350
Query: 510 ELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 569
E+ ++ + S P+ TY++++ + C+
Sbjct: 351 EVLDQMITRDCS-------------PNTVTYNTLIS--------------------TLCK 377
Query: 570 LDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 629
+Q + A E +R L G +P F ++ + N+ A+ L
Sbjct: 378 ENQVEEA---TELARV------------LTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 630 INAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHA 689
M E + L +S S+ KL++ LN L + +V + +
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDS---LCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 479
Query: 690 LCRSEKERD 698
C++ K R+
Sbjct: 480 FCKANKTRE 488
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 110/272 (40%), Gaps = 26/272 (9%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV-YTKLLAILGKAGRPHEALRIFNLM 254
++ GL G ++A+ VLD + RD V Y L++ L K + EA + ++
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMI----TRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---PSKRIKNM------HRKN 305
+ PD+ ++S+ L + ++L E MR K P + NM +
Sbjct: 392 TSK-GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
Query: 306 WDPVLEP-----------DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354
D L ++ YN +++ +++ + +F ++ G+ ++ TY
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414
++ + +S + + + +M G+ TY L+ F G I +A V+ M G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 415 VVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446
Y L LC GR + A ++ I+
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/296 (18%), Positives = 115/296 (38%), Gaps = 27/296 (9%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
L+ L + + + R++ G++ L++GL + R AM + + +
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE---M 426
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM-LEDCNLYPDIAAYHSVAVTLGQVG 278
+ K F Y L+ L G+ EAL + M L C + Y+++ +
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA--RSVITYNTLIDGFCKAN 484
Query: 279 LLKELVKLIERMRQK-----------------PSKRIKNMHRKNWDPVLE---PDLVVYN 318
+E ++ + M S+R+++ + ++E PD YN
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544
Query: 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378
++L K + + + +G +P TYG + + ++G+ ++ + R +
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604
Query: 379 GEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC-CLCNNG 433
G + Y +++ + + K EA+ R M ++ +V Y + LCN G
Sbjct: 605 GINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 164/386 (42%), Gaps = 36/386 (9%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV-YTKLLAILGKAGRPHEALRIFNLM 254
+L+ L D G +QAM VLD + +RD + YT L+ + A+++ + M
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRML----QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM 265
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
D PD+ Y+ + + + G L E +K + M PS +P++
Sbjct: 266 -RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM---PSSGC------------QPNV 309
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374
+ +N +L + + +W + + + G PS T+ + + + + G + K
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369
Query: 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 434
M + G +L+Y L+ F +E K++ A+ + M RG Y + LC +G+
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429
Query: 435 WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVN 493
+DA+ ++ ++ S + P+ IT+ +I G I + M+ +P+ T +
Sbjct: 430 VEDAVEILNQLSS-KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Query: 494 AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQW 553
+++ SR +A + F E R ++P+ T++S++ + Q
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMG-------------IRPNAVTFNSIMLGLCKSRQT 535
Query: 554 EYFEYVYKGMALSGCQLDQTKHAWLL 579
+ M GC+ ++T + L+
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILI 561
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 103/477 (21%), Positives = 182/477 (38%), Gaps = 73/477 (15%)
Query: 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291
T L+ + G+ +A +I + LE PD+ Y+ + + G + + +++RM
Sbjct: 141 TTLIRGFCRLGKTRKAAKILEI-LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS 199
Query: 292 QKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351
+ PD+V YN +L + S + K V ++ + P T
Sbjct: 200 ------------------VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411
Y + +E + + +M G +TY VLV +EG+++EA+ + +M
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301
Query: 412 QRGVVGTASVYYELACCLCNNGRWQDA-MLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470
G + + +C+ GRW DA L+ + ++ + P +TF LI G
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR--KGFSPSVVTFNILINFLCRKGL 359
Query: 471 IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529
+ I I + M H C+PN + N +L + + +A E E R S G
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE---RMVSRG------- 409
Query: 530 GAPLKPDEYTYSSMLEASATAHQWE-------------------YFEYVYKGMALSG--- 567
PD TY++ML A + E + V G+A +G
Sbjct: 410 ---CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTG 466
Query: 568 -------------CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
+ D ++ L+ SR GK F G P+ + F ++
Sbjct: 467 KAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIM 526
Query: 615 IQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES-NEDRISRDKLEKLLNALCN 670
+ ++A+ + M E +T L E + ++++ LE LLN LCN
Sbjct: 527 LGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE-LLNELCN 582
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 156/383 (40%), Gaps = 18/383 (4%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
EPD +N ++ + + ++ ++G +P TY + + +SG L +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
RKM + TY ++ + +G I+ A++ + ME +G+ + Y L LC
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNI 489
G+W D L+++ + S R P ITF L+ + G + + +++ M PNI
Sbjct: 275 KAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNI 333
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T N ++ Y + S+A + + R S PD T++S+++
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS-------------PDIVTFTSLIKGYCM 380
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ + V++ ++ G + ++ L+ ++GK L E F ++ G +P +
Sbjct: 381 VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMT 440
Query: 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 669
+ +L EKA+ + + + + +T + E K+E N C
Sbjct: 441 YGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG---MCKGGKVEDAWNLFC 497
Query: 670 NCNAASSEITVSNLSRALHALCR 692
+ + V + + LC+
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCK 520
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/407 (21%), Positives = 171/407 (42%), Gaps = 34/407 (8%)
Query: 209 AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268
A SVL V L + D + + L+ L G+ EA+ + + M+E+ PD+ Y+
Sbjct: 142 AYSVLGKVMKLGYEPDTTT---FNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPDVVTYN 197
Query: 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH 328
S+ + + G + L+ +M ++ K D+ Y+ ++++
Sbjct: 198 SIVNGICRSGDTSLALDLLRKMEERNVK---------------ADVFTYSTIIDSLCRDG 242
Query: 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYK 388
+FK++ G+K S TY + + ++GK++ + M +T+
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302
Query: 389 VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 448
VL+ F +EGK+ EA + M RG+ Y L C R +A +++ +
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362
Query: 449 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSK 507
+ S P +TFT LI +DD + +F+++ K N T + +++ + ++
Sbjct: 363 KCS-PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 421
Query: 508 AKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567
A+ELF+E S G + PD TY +L+ + E +++ + S
Sbjct: 422 AEELFQEMV---SHG----------VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468
Query: 568 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
L + ++ + GK + F SL G P+ + +T M+
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 515
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 37/313 (11%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR------FVYTKLLAILGKAGRPHEALR 249
L++GL G W +L +D+ SR + LL + K G+ EA
Sbjct: 269 LVRGLCKAGKWNDGALLL---------KDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM-RQKPS------------- 295
++ M+ + P+I Y+++ L E +++ M R K S
Sbjct: 320 LYKEMITR-GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378
Query: 296 ---KRIKN---MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
KR+ + + R L + V Y+ ++ S + K +F+++ G+ P
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438
Query: 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409
TYG+ ++ + +GK + E F + KS +G + Y ++ + GK+ +A +
Sbjct: 439 MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS 498
Query: 410 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469
+ +GV Y + LC G +A +++ K++ + P + T+ LI + + G
Sbjct: 499 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE-DGNAPNDCTYNTLIRAHLRDG 557
Query: 470 HIDDCISIFQHMK 482
+ + + MK
Sbjct: 558 DLTASAKLIEEMK 570
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
PD++ Y +L+ + + + +F+ L+KS + Y +E M + GK +
Sbjct: 436 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
F + G +TY V++ ++G ++EA +R ME+ G Y L
Sbjct: 496 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555
Query: 432 NGRWQDAMLVVEKIKSLRHS 451
+G + ++E++KS S
Sbjct: 556 DGDLTASAKLIEEMKSCGFS 575
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 155/386 (40%), Gaps = 31/386 (8%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
Y LL+ G EA +F M D + PD+ Y + T G++ L+++ L+
Sbjct: 249 TYNTLLSACAIRGLGDEAEMVFRTM-NDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M S PD+ YN +L A S K VF Q++ +G P+A
Sbjct: 308 MASGGSL---------------PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA 352
Query: 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409
TY + + + QSG+YD V + F +M S A TY +L+ F E G E V +
Sbjct: 353 NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHD 412
Query: 410 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469
M + + Y + G +DA +++ + + P +TG+I +
Sbjct: 413 MVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTA-NDIVPSSKAYTGVIEAFGQAA 471
Query: 470 HIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528
++ + F M + P+I T +++L ++R + +++ + L
Sbjct: 472 LYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSR-----------LVD 520
Query: 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
G P D T+++ +EA ++E Y M S C D+ +L S A
Sbjct: 521 SGIPRNRD--TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLV 578
Query: 589 HLLEHAFDSLLEAGEIPHPLFFTEML 614
F+ + + +P + + ML
Sbjct: 579 DECREQFEEMKASDILPSIMCYCMML 604
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 98/473 (20%), Positives = 191/473 (40%), Gaps = 77/473 (16%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDL---KSRFVYTKLLAILGKAGRPHEALRIFN 252
+ K +G W++++ + ++ +R + + +YT ++++LG+ G + L +F+
Sbjct: 111 VFKEFAGRGDWQRSLRLFKYM-----QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165
Query: 253 LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312
M + + +Y ++ G+ G + ++L++RM+ + + P
Sbjct: 166 EMPSQ-GVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEK---------------ISP 209
Query: 313 DLVVYNAVLNACVPSH-QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
++ YN V+NAC W+G+ +F ++R G++P TY + G D
Sbjct: 210 SILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMV 269
Query: 372 FRKMAKSG------------EAIGAL-----------------------TYKVLVRAFWE 396
FR M G E G L +Y VL+ A+ +
Sbjct: 270 FRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAK 329
Query: 397 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 456
G I EA+ M+ G A+ Y L +GR+ D + ++KS ++ P
Sbjct: 330 SGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKS-SNTDPDAA 388
Query: 457 TFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 515
T+ LI +GG+ + +++F M +++ EP++ T ++ + + A+++ +
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM 448
Query: 516 TRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 575
T AN + P Y+ ++EA A +E + M G
Sbjct: 449 T-AND------------IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETF 495
Query: 576 AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN-YEKAV 627
LL +R G E L+++G IP I+A Q +E+AV
Sbjct: 496 HSLLYSFARGGLVKESEAILSRLVDSG-IPRNRDTFNAQIEAYKQGGKFEEAV 547
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 33/376 (8%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL+ GS ++AM V + ++ + Y+ LL + G++GR + ++F L +
Sbjct: 323 LLEAYAKSGSIKEAMGVF---HQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF-LEM 378
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ N PD A Y+ + G+ G KE+V L M ++ +EPD+
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN---------------IEPDME 423
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375
Y ++ AC + + + + + + PS+ Y +E Q+ Y+ F M
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483
Query: 376 AKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435
+ G T+ L+ +F G + E+ A + + G+ + G++
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543
Query: 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNA 494
++A+ ++ R P E T ++ +D+C F+ MK P+I
Sbjct: 544 EEAVKTYVDMEKSR-CDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCM 602
Query: 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 554
ML VY + + + EL EE S + G + +Y S W+
Sbjct: 603 MLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQ---MIKGDYDDDS---------NWQ 650
Query: 555 YFEYVYKGMALSGCQL 570
EYV + GC L
Sbjct: 651 IVEYVLDKLNSEGCGL 666
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 34/245 (13%)
Query: 419 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 478
A V+ E A G WQ ++ + + ++ KP E +T +I G +D C+ +F
Sbjct: 109 ALVFKEFA----GRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVF 164
Query: 479 QHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE-------------TTRANSSGYT 524
M ++ + A++ Y RN + + EL + T N+
Sbjct: 165 DEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARG 224
Query: 525 FLSGDG----------APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 574
L +G ++PD TY+++L A A + E V++ M G D T
Sbjct: 225 GLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTT 284
Query: 575 HAWLLVEASRAGKCHLLEHAFDSLLE---AGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 631
++ L+ GK LE D L E G +P + +L + ++A+ + +
Sbjct: 285 YSHLV---ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFH 341
Query: 632 AMAYA 636
M A
Sbjct: 342 QMQAA 346
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 148/350 (42%), Gaps = 35/350 (10%)
Query: 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERM---RQKPS------------KRIK---- 299
+L PD+ Y ++ L +V + +++++ M R PS KR K
Sbjct: 292 DLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEA 351
Query: 300 -NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV 358
N+ ++ D + P+L VYNA++++ ++ +F ++ K GL+P+ TY + +++
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDM 411
Query: 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 418
+ GK D F +M +G + Y L+ + G I+ A + M + + T
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471
Query: 419 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 478
Y L C+ G+ A+ + ++ + P TFT L+ G I D + +F
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTG-KGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 479 QHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE 537
M + + +PN T N M++ Y SKA E +E T + PD
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG-------------IVPDT 577
Query: 538 YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
Y+Y ++ Q + G+ C+L++ + LL R GK
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/478 (19%), Positives = 186/478 (38%), Gaps = 38/478 (7%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
+L+D R F+ M +GL + L+ G G A ++ +
Sbjct: 407 ILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEG---FMAEM 463
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
+K+ + YT L+ G+ ++ALR+++ M + P I + ++ L + GL
Sbjct: 464 INKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAGL 522
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
+++ VKL M + W+ ++P+ V YN ++ F K+
Sbjct: 523 IRDAVKLFNEMAE-------------WN--VKPNRVTYNVMIEGYCEEGDMSKAFEFLKE 567
Query: 340 LRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399
+ + G+ P +Y + + +G+ F + K + + Y L+ F EGK
Sbjct: 568 MTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Query: 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL--RHSKPLEIT 457
+ EA++ + M QRGV Y L + + + +D L +K + R KP ++
Sbjct: 628 LEEALSVCQEMVQRGVDLDLVCYGVL---IDGSLKHKDRKLFFGLLKEMHDRGLKPDDVI 684
Query: 458 FTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 516
+T +I + G + I+ M + C PN T A++ + ++A+ L +
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ 744
Query: 517 RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 576
+S P++ TY L+ L G + +
Sbjct: 745 PVSSV-------------PNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYN 791
Query: 577 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634
L+ R G+ ++ G P + +T M+ + +++ +KA+ L N+M
Sbjct: 792 MLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT 849
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/437 (19%), Positives = 172/437 (39%), Gaps = 49/437 (11%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ G KG +A+ + + G K S + +T LL+ L +AG +A+++FN M
Sbjct: 478 LMGGYCSKGKINKALRLYHEMTG---KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMA 534
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP------SKR------------ 297
E N+ P+ Y+ + + G + + + ++ M +K S R
Sbjct: 535 E-WNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQA 593
Query: 298 ------IKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351
+ +H+ N E + + Y +L+ + + V +++ + G+
Sbjct: 594 SEAKVFVDGLHKGNC----ELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC 649
Query: 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411
YG+ ++ L+ L ++M G + Y ++ A + G EA M
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709
Query: 412 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI 471
G V Y + LC G +A ++ K++ + S P ++T+ G + + G +
Sbjct: 710 NEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPV-SSVPNQVTY-GCFLDILTKGEV 767
Query: 472 D--DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529
D + + + N T N +++ + R +A EL T + GD
Sbjct: 768 DMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELI-----------TRMIGD 816
Query: 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCH 589
G + PD TY++M+ + + ++ M G + D+ + L+ AG+
Sbjct: 817 G--VSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874
Query: 590 LLEHAFDSLLEAGEIPH 606
+ +L G IP+
Sbjct: 875 KATELRNEMLRQGLIPN 891
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 101/237 (42%), Gaps = 15/237 (6%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
L P++ +A+L+ V + +F + G++P Y + + +
Sbjct: 188 LLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAK 247
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
E M +G + + Y VL+ ++ K+ EAV +++ + + Y L L
Sbjct: 248 EMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGL 307
Query: 430 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPN 488
C ++ + +++++ LR S P E + L+ G I++ +++ + + D PN
Sbjct: 308 CKVQEFEIGLEMMDEMLCLRFS-PSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPN 366
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 545
+ NA++ + F +A+ LF+ + L+P++ TYS +++
Sbjct: 367 LFVYNALIDSLCKGRKFHEAELLFDRMGKIG-------------LRPNDVTYSILID 410
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/506 (21%), Positives = 203/506 (40%), Gaps = 65/506 (12%)
Query: 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYG-------LKDKRDLK---- 226
+ + Q GL +M +K G S + VLD + G RD+K
Sbjct: 118 ISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGF 177
Query: 227 --SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284
+ F Y LL L K + A ++ + + + PD +Y +V ++ +VGL+KE
Sbjct: 178 EPNVFTYNVLLKALCKNNKVDGAKKLL-VEMSNKGCCPDAVSYTTVISSMCEVGLVKEGR 236
Query: 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
+L ER EP + VYNA++N H +KG F + +++ + G
Sbjct: 237 ELAER--------------------FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKG 276
Query: 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAV 404
+ P+ +Y + V+ SG+ +L F +M K G T LV+ + G +A+
Sbjct: 277 ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDAL 336
Query: 405 AAVRNMEQR-GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 463
M + G+ Y L C++G A+ V ++ + S + T+ LI
Sbjct: 337 DLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIR-TYGSLIN 395
Query: 464 SSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSG 522
G +D + I+ M C PN+ M++ R+ F +A+ L E ++ N +
Sbjct: 396 GFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAP 455
Query: 523 YT-----FLSG--DGAPL----------------KPDEYTYSSMLEASATAHQWEYFEYV 559
F+ G D L P+ TY+ +L+ A A++ E +
Sbjct: 456 SVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGL 515
Query: 560 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619
+ + + G + + + LL + AG + ++ G+ P + +++
Sbjct: 516 TREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCK 575
Query: 620 QSNYEKAVALINAMAYAPFHITERQW 645
Q E+A +++ ++ R+W
Sbjct: 576 QGKAERAAQMLDLVSCG-----RRKW 596
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/381 (19%), Positives = 138/381 (36%), Gaps = 36/381 (9%)
Query: 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYK 388
Q V ++ +Q++ G S + + V Q G + E F ++ + G Y
Sbjct: 91 QVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYN 150
Query: 389 VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA-MLVVEKIKS 447
++ E +I R+M++ G Y L LC N + A L+VE S
Sbjct: 151 HVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVE--MS 208
Query: 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK 507
+ P +++T +I S + G + + + + + EP + NA++ + +
Sbjct: 209 NKGCCPDAVSYTTVISSMCEVGLVKE----GRELAERFEPVVSVYNALINGLCKEHDYKG 264
Query: 508 AKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567
A EL E S P+ +YS+++ + Q E M G
Sbjct: 265 AFELMREMVEKGIS-------------PNVISYSTLINVLCNSGQIELAFSFLTQMLKRG 311
Query: 568 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSL-------LEAGEIPHPLFFTEMLIQAIVQ 620
C H + +S C L FD+L G P+ + + ++
Sbjct: 312 C------HPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH 365
Query: 621 SNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITV 680
N KAV++ + M R + L R S D + N + + +
Sbjct: 366 GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVY 425
Query: 681 SNLSRALHALCRSEKERDLSS 701
+N+ + ALCR K ++ S
Sbjct: 426 TNM---VEALCRHSKFKEAES 443
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 124/279 (44%), Gaps = 35/279 (12%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L++G G+ +A+SV + + ++++ Y L+ K G A+ I+N ML
Sbjct: 358 LVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRT---YGSLINGFAKRGSLDGAVYIWNKML 414
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---PS--------KRIKNMHRK 304
P++ Y ++ L + KE LIE M ++ PS K + + R
Sbjct: 415 TS-GCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRL 473
Query: 305 NWDPVL----------EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354
+W + P++V YN +L+ +++ + + + +++ G++ S++TY
Sbjct: 474 DWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNT 533
Query: 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEA------VAAVR 408
+ +G + + KM G++ +T +++ A+ ++GK A V+ R
Sbjct: 534 LLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGR 593
Query: 409 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447
+ V+ +V + LC + +D ++++E++ S
Sbjct: 594 RKWRPDVISYTNVIWG----LCRSNCREDGVILLERMIS 628
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 140/320 (43%), Gaps = 15/320 (4%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+P+ V +N +++ ++ + ++ G +P TYG + + + G DL
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
+KM K + Y ++ A +N+A+ M+ +G+ Y L CLC
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
N GRW DA ++ + R P +TF+ LI + + G + + ++ M K +P+I
Sbjct: 302 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T ++++ + +D +AK +FE +S D P+ TY+++++
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFE----------LMISKDCF---PNVVTYNTLIKGFCK 407
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
A + E +++ M+ G + + L+ +AG C + + F ++ G P +
Sbjct: 408 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 467
Query: 610 FTEMLIQAIVQSNYEKAVAL 629
++ +L EKA+ +
Sbjct: 468 YSILLDGLCKYGKLEKALVV 487
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F Y+ L+ R EA +F LM+ +DC +P++ Y+++ + ++E ++L
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDC--FPNVVTYNTLIKGFCKAKRVEEGMELF 418
Query: 288 ERMRQK--------------------PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
M Q+ + + +K + PD++ Y+ +L+
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387
+ + VF+ L+KS ++P TY + +E M ++GK + + F ++ G + Y
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538
Query: 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 425
++ F +G EA A R M++ G + + Y L
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTL 576
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 17/210 (8%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ L +AG A +IF M+ D + PDI Y + L + G L++ + + E +
Sbjct: 433 YNTLIQGLFQAGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
++ +EPD+ YN ++ + + + + +F L G+KP+
Sbjct: 492 QKSK---------------MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 536
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
Y + + G + FR+M + G + TY L+RA +G + ++ M
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAML 440
G VG AS + + ++GR + + L
Sbjct: 597 RSCGFVGDAST-ISMVINMLHDGRLEKSYL 625
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 160/385 (41%), Gaps = 28/385 (7%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
+T L+ R EA+ + N M+E + PD+ Y ++ +L + G + + L ++M
Sbjct: 145 FTSLINGFCLGNRMEEAMSMVNQMVE-MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM 203
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
+N+ + PD+V+Y +++N S +W+ + + + K +KP
Sbjct: 204 -------------ENYG--IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
T+ ++ ++ GK+ E + +M + A TY L+ F EG ++EA M
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470
E +G Y L C + DAM + ++ S + IT+T LI G
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQGFGQVGK 367
Query: 471 IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529
+ +F HM PNI T N +L N KA +FE+ + G
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG------- 420
Query: 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCH 589
+ P+ +TY+ +L + E V++ M + + ++ +AGK
Sbjct: 421 ---VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Query: 590 LLEHAFDSLLEAGEIPHPLFFTEML 614
+ F SL G P+ + +T M+
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMI 502
Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 128/310 (41%), Gaps = 16/310 (5%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
P ++ + +LN ++ V + L+ G+ T L M QS + L F
Sbjct: 70 PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
KM K G +T+ L+ F ++ EA++ V M + G+ +Y + LC
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCK 189
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIG 490
NG A+ + +++++ +P + +T L+ + G D S+ + M K +P++
Sbjct: 190 NGHVNYALSLFDQMEN-YGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550
T NA++ + + F A+EL+ E R + + P+ +TY+S++
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMS-------------IAPNIFTYTSLINGFCME 295
Query: 551 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 610
+ ++ M GC D + L+ + K F + + G + + +
Sbjct: 296 GCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITY 355
Query: 611 TEMLIQAIVQ 620
T LIQ Q
Sbjct: 356 TT-LIQGFGQ 364
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/325 (18%), Positives = 123/325 (37%), Gaps = 50/325 (15%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
EPD+V + +++N ++ + + Q+ + G+KP Y
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMY----------------- 180
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
++ + + G +N A++ ME G+ +Y L L
Sbjct: 181 ------------------TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222
Query: 430 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPN 488
CN+GRW+DA ++ + R KP ITF LI + + G D ++ M + PN
Sbjct: 223 CNSGRWRDADSLLRGMTK-RKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPN 281
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 548
I T +++ + +A+++F + G PD Y+S++
Sbjct: 282 IFTYTSLINGFCMEGCVDEARQMF-----------YLMETKGC--FPDVVAYTSLINGFC 328
Query: 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608
+ + ++ M+ G + + L+ + GK ++ + F ++ G P+
Sbjct: 329 KCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIR 388
Query: 609 FFTEMLIQAIVQSNYEKAVALINAM 633
+ +L +KA+ + M
Sbjct: 389 TYNVLLHCLCYNGKVKKALMIFEDM 413
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
Query: 217 YGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276
Y + K + YT L+ G+ G+P+ A +F+ M+ + P+I Y+ + L
Sbjct: 341 YEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSR-GVPPNIRTYNVLLHCLCY 399
Query: 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWV 336
G +K+ + + E +M ++ D V P++ YN +L+ + + + V
Sbjct: 400 NGKVKKALMIFE-----------DMQKREMDGV-APNIWTYNVLLHGLCYNGKLEKALMV 447
Query: 337 FKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWE 396
F+ +RK + TY + ++ M ++GK F + G +TY ++ +
Sbjct: 448 FEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFR 507
Query: 397 EGKINEAVAAVRNMEQRGV 415
EG +EA R M++ GV
Sbjct: 508 EGLKHEAHVLFRKMKEDGV 526
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/370 (20%), Positives = 155/370 (41%), Gaps = 32/370 (8%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
P+ + ++ L G + E ++L++RM + K PDL+ N ++
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PDLITINTLV 200
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
N S + + ++ + G +P+A TYG + VM +SG+ L E RKM +
Sbjct: 201 NGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD-AML 440
+ A+ Y +++ + G ++ A ME +G+ Y L CN GRW D A L
Sbjct: 261 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 320
Query: 441 VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVY 499
+ + IK R P +TF+ LI S + G + + + + M P+ T +++ +
Sbjct: 321 LRDMIK--RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 500 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 559
+ + KA ++ + P+ T++ ++ A++ + +
Sbjct: 379 CKENHLDKANQMVDLMVSKGCD-------------PNIRTFNILINGYCKANRIDDGLEL 425
Query: 560 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619
++ M+L G D + L+ GK ++ + F ++ P+ + + +L
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485
Query: 620 QSNYEKAVAL 629
EKA+ +
Sbjct: 486 NGESEKALEI 495
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 162/379 (42%), Gaps = 38/379 (10%)
Query: 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230
TA + +R M + + + ++ GL GS A ++ + ++ K +
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE---MEMKGITTNIIT 300
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ AGR + ++ M++ + P++ + + + + G L+E +L + M
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKR-KINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA-CVPSHQWKGVFWVFKQLRKSGLKPSA 349
+HR + PD + Y ++++ C +H K V + K G P+
Sbjct: 360 ----------IHRG-----IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK-GCDPNI 403
Query: 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409
T+ + + ++ + D E FRKM+ G +TY L++ F E GK+N A +
Sbjct: 404 RTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQE 463
Query: 410 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM-DG 468
M R V Y L LC+NG + A+ + EKI+ + L+I +II M +
Sbjct: 464 MVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE--KSKMELDIGIYNIIIHGMCNA 521
Query: 469 GHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 527
+DD +F + +P + T N M+ + S+A+ LF + +
Sbjct: 522 SKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK-----------ME 570
Query: 528 GDGAPLKPDEYTYSSMLEA 546
DG PD +TY+ ++ A
Sbjct: 571 EDGHA--PDGWTYNILIRA 587
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 15/259 (5%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
EP+ + ++ ++N + + ++ + G KP T + + SGK
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAML 214
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
KM + G A+TY ++ + G+ A+ +R ME+R + A Y + LC
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
+G +A + +++ ++ IT+ LI + G DD + + M K PN+
Sbjct: 275 KHGSLDNAFNLFNEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 333
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T + ++ + + +A+EL +E + PD TY+S+++
Sbjct: 334 VTFSVLIDSFVKEGKLREAEELHKEMIHRG-------------IAPDTITYTSLIDGFCK 380
Query: 550 AHQWEYFEYVYKGMALSGC 568
+ + + M GC
Sbjct: 381 ENHLDKANQMVDLMVSKGC 399
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
+E D+ +YN +++ + + + +F L G+KP TY + + + + G
Sbjct: 504 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 563
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
FRKM + G A TY +L+RA +G ++V + +++ G AS ++ +
Sbjct: 564 LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST-IKMVIDM 622
Query: 430 CNNGRWQDAML 440
++GR + + L
Sbjct: 623 LSDGRLKKSFL 633
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/311 (17%), Positives = 118/311 (37%), Gaps = 16/311 (5%)
Query: 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFF 372
+L + ++N + F ++ K G +P+ T+ + + G+ E
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181
Query: 373 RKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432
+M + G +T LV GK EA+ + M + G A Y + +C +
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241
Query: 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGT 491
G+ AM ++ K++ R+ K + ++ +I G +D+ ++F M+ NI T
Sbjct: 242 GQTALAMELLRKMEE-RNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 300
Query: 492 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH 551
N ++ + + +L + + + P+ T+S ++++
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRK-------------INPNVVTFSVLIDSFVKEG 347
Query: 552 QWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT 611
+ E ++K M G D + L+ + D ++ G P+ F
Sbjct: 348 KLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFN 407
Query: 612 EMLIQAIVQSN 622
+LI ++N
Sbjct: 408 -ILINGYCKAN 417
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 95/242 (39%), Gaps = 22/242 (9%)
Query: 360 LQSGKYDL----VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415
L+SG D+ + FR M S + + L A + + + +A + ME +G+
Sbjct: 60 LRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI 119
Query: 416 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 475
+ C C + A + KI L + +P ITF+ LI G + + +
Sbjct: 120 AHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGY-EPNTITFSTLINGLCLEGRVSEAL 178
Query: 476 SIFQHMKDHC-EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK 534
+ M + +P++ T+N ++ + ++A L ++ +
Sbjct: 179 ELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC-------------Q 225
Query: 535 PDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA 594
P+ TY +L + Q + + M +LD K++ ++ + G L++A
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS---LDNA 282
Query: 595 FD 596
F+
Sbjct: 283 FN 284
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 146/342 (42%), Gaps = 17/342 (4%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
PD + + +++ ++ + ++ + G +P+ TYG+ + + + G DL
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 247
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
KM + + + ++ + + +++A+ + ME +G+ Y L CLC+
Sbjct: 248 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 307
Query: 432 NGRWQDA-MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
GRW DA L+ + I+ + P +TF LI + + G + ++ M K +P+I
Sbjct: 308 YGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T N+++ + +D KAK++FE + PD TY+++++
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-------------PDVVTYNTLIKGFCK 412
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ + E +++ M+ G D + L+ G C + F ++ G P +
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 472
Query: 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 651
++ +L EKA+ + + M + + +T + E
Sbjct: 473 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/422 (19%), Positives = 156/422 (36%), Gaps = 79/422 (18%)
Query: 143 VEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGL---MFTEGQMLKLLKG 199
V+ E +R + L+ L ++ V M Q G + T G ++ G
Sbjct: 178 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV---VVNG 234
Query: 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCN 259
L +G A+++L+ + K + D+ ++ ++ L K +AL +F M E
Sbjct: 235 LCKRGDTDLALNLLNKMEAAKIEADV---VIFNTIIDSLCKYRHVDDALNLFKEM-ETKG 290
Query: 260 LYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319
+ P++ Y S+ L G + +L+ M +K + P+LV +NA
Sbjct: 291 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK---------------INPNLVTFNA 335
Query: 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG 379
+++A V ++ ++ + K + P TY + + D + F M
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395
Query: 380 EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM 439
+TY L++ F + ++ + R M RG+VG
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT-------------------- 435
Query: 440 LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKV 498
+T+T LI G D+ +F+ M D P+I T + +L
Sbjct: 436 ----------------VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479
Query: 499 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ----WE 554
N KA E+F+ ++ +K D Y Y++M+E A + W+
Sbjct: 480 LCNNGKLEKALEVFDYMQKSE-------------IKLDIYIYTTMIEGMCKAGKVDDGWD 526
Query: 555 YF 556
F
Sbjct: 527 LF 528
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 24/222 (10%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F Y L+ R +A ++F M+ +DC +PD+ Y++ L+K K
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC--FPDVVTYNT---------LIKGFCK-- 412
Query: 288 ERMRQKPSKRIKN---MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
SKR+++ + R+ L D V Y ++ VFKQ+ G
Sbjct: 413 -------SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAV 404
+ P TY + ++ + +GK + E F M KS + Y ++ + GK+++
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 405 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446
++ +GV Y + LC+ Q+A +++K+K
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 6/186 (3%)
Query: 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMA 376
Y +L + + +F + KS PS + + + + K+D+V KM
Sbjct: 53 YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112
Query: 377 KSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 436
+ G TY +L+ F +I+ A+A + M + G + L C+ R
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172
Query: 437 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGT---- 491
DA+ +V+++ + + +P ITFT LI + +++ M + C+PN+ T
Sbjct: 173 DAVALVDQMVEMGY-RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231
Query: 492 VNAMLK 497
VN + K
Sbjct: 232 VNGLCK 237
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ L G A ++F M+ D + PDI Y + L G L++ +++ + M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Query: 291 RQKPSK--------RIKNMHR-----KNWDPV-------LEPDLVVYNAVLNACVPSHQW 330
++ K I+ M + WD ++P++V YN +++
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 556
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390
+ + + K++++ G P++ TY + L+ G E R+M +S +G + L
Sbjct: 557 QEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM-RSCRFVGDASTIGL 615
Query: 391 VRAFWEEGKINEA 403
V +G+++++
Sbjct: 616 VANMLHDGRLDKS 628
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 114/557 (20%), Positives = 228/557 (40%), Gaps = 43/557 (7%)
Query: 148 EKRWRSEAEAIRVLVDRLSEREMTAKNWKFV-RIMNQSGLMFTEGQMLKLLKGLGDKGSW 206
+K +R +A A L+ L + T+ V R M + G + LLKGL D+
Sbjct: 115 KKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRS 174
Query: 207 RQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266
++A+ +L + + YT ++ K G +A ++ ML D + PD+
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML-DRGILPDVVT 233
Query: 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP 326
Y+S+ L + + + ++++ M +KN + PD + YN++L+
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTM-------VKNG--------VMPDCMTYNSILHGYCS 278
Query: 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALT 386
S Q K K++R G++P TY L M+ + ++G+ + F M K G T
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338
Query: 387 YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446
Y L++ + +G + E + M + G+ V+ L C G+ AMLV K++
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMR 398
Query: 447 SLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMF 505
+ P +T+ +I G ++D + F+ M D P N+++ + +
Sbjct: 399 Q-QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457
Query: 506 SKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 565
+A+EL E T ++S++++ + E +++ M
Sbjct: 458 ERAEELILEMLDRGICLNTIF-------------FNSIIDSHCKEGRVIESEKLFELMVR 504
Query: 566 SGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEK 625
G + + + L+ AGK ++ G P+ + ++ ++ S E
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564
Query: 626 AVALINAM---AYAPFHITERQWTE-LFESNEDRISRDKLEKLLNALCNCNAASSEITVS 681
A+ L M +P IT + LF++ +++ ++ + ++I +S
Sbjct: 565 ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI-------TESGTQIELS 617
Query: 682 NLSRALHALCRSEKERD 698
+ LH LC+++ D
Sbjct: 618 TYNIILHGLCKNKLTDD 634
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 101/520 (19%), Positives = 195/520 (37%), Gaps = 113/520 (21%)
Query: 161 LVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220
++ L + + K + + M ++G+M +L G G ++A+ L +
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296
Query: 221 DKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280
+ D+ + Y+ L+ L K GR EA +IF+ M + L P+I Y ++ G L
Sbjct: 297 VEPDVVT---YSLLMDYLCKNGRCMEARKIFDSMTKR-GLKPEITTYGTLLQGYATKGAL 352
Query: 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340
E+ L++ M + + PD V++ ++ A + VF ++
Sbjct: 353 VEMHGLLDLMVRNG---------------IHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397
Query: 341 RKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF-----W 395
R+ GL P+A TYG + ++ +SG+ + +F +M G + G + Y L+ W
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457
Query: 396 E------------------------------EGKINEAVAAVRNMEQRGVVGTASVYYEL 425
E EG++ E+ M + GV Y L
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517
Query: 426 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH- 484
C G+ +AM ++ + S+ KP +T++ LI ++D + +F+ M+
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSV-GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 485 CEPNIGTVNAMLK-------------VYSR----------------------NDMFSKAK 509
P+I T N +L+ +Y R N + A
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 510 ELFE----------------------ETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEAS 547
++F+ + R + + F++ L P+ +TY M E
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696
Query: 548 ATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
E + ++ M +GC +D +++ E + G+
Sbjct: 697 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 736
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 122/323 (37%), Gaps = 60/323 (18%)
Query: 336 VFKQLRKSGLKPSAATYGL--AMEVMLQSGKYDLVHEFFRKMAKSG--EAIGAL-TYKVL 390
VF +L + G A+ YGL A+ + + V + R MA++G E L TY +L
Sbjct: 37 VFDELLRRG--RGASIYGLNRALADVARDSPAAAVSRYNR-MARAGADEVTPDLCTYGIL 93
Query: 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV-------- 442
+ G+++ AA+ N+ ++G A + L LC + R DAM +V
Sbjct: 94 IGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELG 153
Query: 443 ---------------------EKIKSLRH---------SKPLEITFTGLIISSMDGGHID 472
++ L H S P +++T +I G D
Sbjct: 154 CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD 213
Query: 473 DCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 531
S + M D P++ T N+++ + KA E+ +
Sbjct: 214 KAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG------------ 261
Query: 532 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLL 591
+ PD TY+S+L ++ Q + K M G + D ++ L+ + G+C
Sbjct: 262 -VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320
Query: 592 EHAFDSLLEAGEIPHPLFFTEML 614
FDS+ + G P + +L
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLL 343
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 36/282 (12%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVY--GLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL 253
L+ G G +AM +L + GLK + Y+ L+ K R +AL +F
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLK-----PNTVTYSTLINGYCKISRMEDALVLFKE 571
Query: 254 MLEDCNLYPDIAAYHSVAVTLGQV---GLLKEL-VKLIERMRQ----------------K 293
M E + PDI Y+ + L Q KEL V++ E Q K
Sbjct: 572 M-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNK 630
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
+ M + L+ + +N +++A + + +F +GL P+ TY
Sbjct: 631 LTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR 690
Query: 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR 413
L E ++ G + + + F M +G + + +VR + G+I A + ++++
Sbjct: 691 LMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEK 750
Query: 414 GV---VGTASVYYELACCLCNNGRWQDAM-LVVEKIKSLRHS 451
TAS++ +L + G++Q+ + EK KS S
Sbjct: 751 HFSLEASTASLFIDLL----SGGKYQEYYRFLPEKYKSFIES 788
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/399 (23%), Positives = 179/399 (44%), Gaps = 46/399 (11%)
Query: 224 DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKEL 283
D++SR TKL+ L + GRP EA IFN ++E+ + P + Y ++ L + L
Sbjct: 318 DVRSR---TKLMNGLIERGRPQEAHSIFNTLIEEGH-KPSLITYTTLVTALTRQKHFHSL 373
Query: 284 VKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343
+ LI ++ + L+PD +++NA++NA S +F+++++S
Sbjct: 374 LSLISKVEKNG---------------LKPDTILFNAIINASSESGNLDQAMKIFEKMKES 418
Query: 344 GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAI--GALTYKVLVRAFWEEGKIN 401
G KP+A+T+ ++ + GK + M + E + T +LV+A+ + KI
Sbjct: 419 GCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIE 477
Query: 402 EAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK--PLEITFT 459
EA V M+ GV + LA G A ++ I + H+K P T
Sbjct: 478 EAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNKVKPNVRTCG 535
Query: 460 GLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVY-SRNDM--FSKAKELFEET 515
++ + G +++ + F MK+ PN+ N+++K + + NDM + +L EE
Sbjct: 536 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEF 595
Query: 516 TRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 575
+KPD T+S+++ A ++ + E +Y M G D
Sbjct: 596 G----------------VKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAF 639
Query: 576 AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
+ L +RAG+ E + + + G P+ + +T+++
Sbjct: 640 SILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQII 678
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 24/323 (7%)
Query: 161 LVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220
+++ SE + K M +SG T L+KG G G ++ +LD + L+
Sbjct: 395 IINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM--LR 452
Query: 221 DKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG-L 279
D+ + L+ + EA I M + + PD+ ++++A ++G
Sbjct: 453 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKM-QSYGVKPDVVTFNTLAKAYARIGST 511
Query: 280 LKELVKLIERM---RQKPSKRIKNMHRKNW-----------------DPVLEPDLVVYNA 319
+I RM + KP+ R + + + P+L V+N+
Sbjct: 512 CTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNS 571
Query: 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG 379
++ + + GV V + + G+KP T+ M G E + M + G
Sbjct: 572 LIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGG 631
Query: 380 EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM 439
+ +L + + G+ +A + M + GV +Y ++ C+ G + AM
Sbjct: 632 IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691
Query: 440 LVVEKIKSLRHSKPLEITFTGLI 462
V +K+ + P T+ LI
Sbjct: 692 QVYKKMCGIVGLSPNLTTYETLI 714
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 88/198 (44%), Gaps = 22/198 (11%)
Query: 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVA---VTLGQVGLLKELVKLIERMRQKPS--- 295
G+ EALR F M E ++P++ ++S+ + + + + E+V L+E KP
Sbjct: 545 GKMEEALRFFYRMKE-LGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVT 603
Query: 296 --------------KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR 341
KR + ++ + ++PD+ ++ + + + + + Q+R
Sbjct: 604 FSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 663
Query: 342 KSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK-SGEAIGALTYKVLVRAFWEEGKI 400
K G++P+ Y + +G+ + ++KM G + TY+ L+ F E +
Sbjct: 664 KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQP 723
Query: 401 NEAVAAVRNMEQRGVVGT 418
+A +++ME + VV T
Sbjct: 724 WKAEELLKDMEGKNVVPT 741
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 19/275 (6%)
Query: 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300
AG+P +A+++F L + + + D+A+++++ L + +++ +L +R + S
Sbjct: 139 AGKPDKAVKLF-LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSV---- 193
Query: 301 MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVML 360
D V YN +LN + V K++ + G+ P+ TY ++
Sbjct: 194 ------------DTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241
Query: 361 QSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 420
++G+ EFF +M K I +TY +V F G+I A M + GV+ + +
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301
Query: 421 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 480
Y + LC ++A+++ E++ R +P T+ LI G + Q
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVR-RGYEPNVTTYNVLIRGLFHAGEFSRGEELMQR 360
Query: 481 MKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514
M++ CEPN T N M++ YS KA LFE+
Sbjct: 361 MENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEK 395
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 41/297 (13%)
Query: 441 VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVY 499
++ +++SLR P TF + G D + +F +M +H C ++ + N +L V
Sbjct: 113 LIHRMRSLRIG-PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 171
Query: 500 SRNDMFSKAKELFE--------ETTRANS--SGYTFLSGDGAPLK-----------PDEY 538
++ KA ELF +T N +G+ + L+ P+
Sbjct: 172 CKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLT 231
Query: 539 TYSSMLE----ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA 594
TY++ML+ A H WE+F + K C++D + ++ AG+ +
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKK----RDCEIDVVTYTTVVHGFGVAGEIKRARNV 287
Query: 595 FDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM---AYAPFHITERQWTE-LFE 650
FD ++ G +P + M+ + N E AV + M Y P T LF
Sbjct: 288 FDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFH 347
Query: 651 SNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGS 707
+ E + ++++ N C N + + + S SE E+ L GS
Sbjct: 348 AGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSEC------SEVEKALGLFEKMGS 398
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 87/217 (40%), Gaps = 19/217 (8%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLE-DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
Y +L +AG+ A F M + DC + D+ Y +V G G +K
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEI--DVVTYTTVVHGFGVAGEIK------- 282
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
R +N+ + + P + YNA++ + +F+++ + G +P+
Sbjct: 283 --------RARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPN 334
Query: 349 AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVR 408
TY + + + +G++ E ++M G TY +++R + E ++ +A+
Sbjct: 335 VTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Query: 409 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 445
M + Y L + R +D M+V K+
Sbjct: 395 KMGSGDCLPNLDTYNILISGMFVRKRSED-MVVAGKL 430
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 145/342 (42%), Gaps = 17/342 (4%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
PD + + +++ ++ + ++ + G +P+ TYG+ + + + G DL
Sbjct: 113 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 172
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
KM + + + ++ + + +++A+ + ME +G+ Y L CLC+
Sbjct: 173 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 232
Query: 432 NGRWQDA-MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
GRW DA L+ + I+ + P +TF LI + + G + + M K +P+I
Sbjct: 233 YGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 290
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T N+++ + +D KAK++FE + PD TY+++++
Sbjct: 291 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-------------PDLDTYNTLIKGFCK 337
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ + E +++ M+ G D + L+ G C + F ++ G P +
Sbjct: 338 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 397
Query: 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 651
++ +L EKA+ + + M + + +T + E
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 137/368 (37%), Gaps = 70/368 (19%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLE-DCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
+T L+ L + EA+ + + M++ C P++ Y V L + G + L+
Sbjct: 116 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDIDLAFNLL 173
Query: 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
+M +E D+V++N ++++ +FK++ G++P
Sbjct: 174 NKMEAAK---------------IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP 218
Query: 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407
+ TY + + G++ + M + +T+ L+ AF +EGK EA
Sbjct: 219 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLH 278
Query: 408 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE----------------KIKSLRHS 451
+M +R + Y L C + R A + E IK S
Sbjct: 279 DDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKS 338
Query: 452 KPLE------------------ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTV 492
K +E +T+T LI G D+ +F+ M D P+I T
Sbjct: 339 KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 398
Query: 493 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ 552
+ +L N KA E+F+ ++ +K D Y Y++M+E A +
Sbjct: 399 SILLDGLCNNGKLEKALEVFDYMQKSE-------------IKLDIYIYTTMIEGMCKAGK 445
Query: 553 ----WEYF 556
W+ F
Sbjct: 446 VDDGWDLF 453
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 24/222 (10%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F Y L+ R +A ++F M+ +DC +PD+ Y++ L+K K
Sbjct: 291 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDC--FPDLDTYNT---------LIKGFCK-- 337
Query: 288 ERMRQKPSKRIKN---MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
SKR+++ + R+ L D V Y ++ VFKQ+ G
Sbjct: 338 -------SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Query: 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAV 404
+ P TY + ++ + +GK + E F M KS + Y ++ + GK+++
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 405 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446
++ +GV Y + LC+ Q+A +++K+K
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 492
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 347 PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAA 406
PS + + + + K+DLV KM + G + TY +L+ F +I+ A+A
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 407 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 466
+ M + G + L C+ R DA+ +V+++ + + +P ITFT LI
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY-RPDTITFTTLIHGLF 126
Query: 467 DGGHIDDCISIFQHM-KDHCEPNIGT----VNAMLK 497
+ +++ M + C+PN+ T VN + K
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 162
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ L G A ++F M+ D + PDI Y + L G L++ +++ + M
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Query: 291 RQKPSK--------RIKNMHR-----KNWDPV-------LEPDLVVYNAVLNACVPSHQW 330
++ K I+ M + WD ++P++V YN +++
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 481
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390
+ + + K++++ G P + TY + L+ G E R+M +S +G + L
Sbjct: 482 QEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM-RSCRFVGDASTIGL 540
Query: 391 VRAFWEEGKINEA 403
V +G+++++
Sbjct: 541 VANMLHDGRLDKS 553
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 115/518 (22%), Positives = 202/518 (38%), Gaps = 101/518 (19%)
Query: 186 LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL------LAILG 239
L F + QMLK+ G++ +++ +L+ + D+ + TKL L +
Sbjct: 85 LGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDV---ILCTKLIKGFFTLRNIP 141
Query: 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIK 299
KA R E L F PD+ AY+++ ++ + + ++++RMR K
Sbjct: 142 KAVRVMEILEKFG--------QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD----- 188
Query: 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVM 359
PD V YN ++ + + V QL +P+ TY + +E
Sbjct: 189 ----------FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEAT 238
Query: 360 LQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 419
+ G D + +M G TY ++R +EG ++ A VRN+E +G
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDV 298
Query: 420 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 479
Y L L N G+W++ ++ K+ S P +T++ LI + G I++ +++ +
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFS-EKCDPNVVTYSILITTLCRDGKIEEAMNLLK 357
Query: 480 HMK------------------------------------DHCEPNIGTVNAMLKVYSRND 503
MK D C P+I N +L +N
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNG 417
Query: 504 MFSKAKELF----EETTRANSSGYTFL------SGD------------GAPLKPDEYTYS 541
+A E+F E NSS Y + SGD + PDE TY+
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYN 477
Query: 542 SMLEASATAHQW-EYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA---FDS 597
SM+ E FE + + + C+ + + +V K H +E A +S
Sbjct: 478 SMISCLCREGMVDEAFELL---VDMRSCEFHPSVVTYNIVLLGFC-KAHRIEDAINVLES 533
Query: 598 LLEAGEIPHPLFFTEMLIQAIVQSNYE-KAVALINAMA 634
++ G P+ +T +LI+ I + Y +A+ L N +
Sbjct: 534 MVGNGCRPNETTYT-VLIEGIGFAGYRAEAMELANDLV 570
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 136/305 (44%), Gaps = 15/305 (4%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+PD +N +++ ++ + ++ G +P TYG+ + + + G DL
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
+KM + G + Y ++ A +N+A+ M+ +G+ Y L CLC
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
N GRW DA ++ + R P +TF+ LI + + G + + ++ M K +P+I
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T ++++ + +D +AK +FE +S D P+ TY+++++
Sbjct: 362 FTYSSLINGFCMHDRLDEAKHMFE----------LMISKD---CFPNVVTYNTLIKGFCK 408
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
A + + +++ M+ G + + L+ +A +C + F ++ G +P +
Sbjct: 409 AKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468
Query: 610 FTEML 614
++ +L
Sbjct: 469 YSILL 473
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/413 (20%), Positives = 159/413 (38%), Gaps = 66/413 (15%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F + L+ L + R EA+ + + ++++ C PD+ Y V L + G + + L+
Sbjct: 187 FTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ--PDLVTYGIVVNGLCKRGDIDLALSLL 244
Query: 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
++M Q +EP +V+YN +++A +F ++ G++P
Sbjct: 245 KKMEQGK---------------IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289
Query: 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407
+ TY + + G++ M + +T+ L+ AF +EGK+ EA
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 349
Query: 408 RNMEQRGVVGTASVYYELACCLCNNGRWQDAM----LVVEK------------IKSLRHS 451
M +R + Y L C + R +A L++ K IK +
Sbjct: 350 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 409
Query: 452 KPLE------------------ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTV 492
K ++ +T+T LI D+ +F+ M D P+I T
Sbjct: 410 KRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469
Query: 493 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ 552
+ +L N A +FE R+ ++PD YTY+ M+E A +
Sbjct: 470 SILLDGLCNNGKVETALVVFEYLQRSK-------------MEPDIYTYNIMIEGMCKAGK 516
Query: 553 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 605
E ++ ++L G + + + ++ R G + F + E G +P
Sbjct: 517 VEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP 569
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 118/266 (44%), Gaps = 27/266 (10%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F Y+ L+ R EA +F LM+ +DC +P++ Y+++ + + E ++L
Sbjct: 362 FTYSSLINGFCMHDRLDEAKHMFELMISKDC--FPNVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 288 ERMRQKP-----------------SKRIKN----MHRKNWDPVLEPDLVVYNAVLNACVP 326
M Q+ ++ N + D VL PD++ Y+ +L+
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL-PDIMTYSILLDGLCN 478
Query: 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALT 386
+ + + VF+ L++S ++P TY + +E M ++GK + + F ++ G +T
Sbjct: 479 NGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVT 538
Query: 387 YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446
Y ++ F +G EA A R M++ G + + Y L +G + ++ +++
Sbjct: 539 YTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 598
Query: 447 SLRHSKPLEITFTGLIISSMDGGHID 472
S R + + GL+ + + G +D
Sbjct: 599 SCRFVG--DASTIGLVTNMLHDGRLD 622
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 17/210 (8%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ +A A +F M+ D + PDI Y + L G ++ + + E +
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSD-GVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
++ +EPD+ YN ++ + + + + +F L G+KP+
Sbjct: 493 QRSK---------------MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVV 537
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
TY M + G + FR+M + G + TY L+RA +G + +R M
Sbjct: 538 TYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAML 440
VG AS L + ++GR + L
Sbjct: 598 RSCRFVGDAST-IGLVTNMLHDGRLDKSFL 626
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 30/244 (12%)
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
+F + KS PS + + + + K+DLV +M G + TY +L+ F
Sbjct: 68 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC 127
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
+++ A+A + M + G L C+ R DA+ +V ++ + + +P
Sbjct: 128 RRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY-QPDS 186
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGT----VNAMLKVYSRND------- 503
TF LI + +++ M C+P++ T VN + K R D
Sbjct: 187 FTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCK---RGDIDLALSL 243
Query: 504 --------------MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
+++ + N + F D ++P+ TY+S++
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303
Query: 550 AHQW 553
+W
Sbjct: 304 YGRW 307
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/409 (22%), Positives = 167/409 (40%), Gaps = 52/409 (12%)
Query: 181 MNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240
M ++GL+ L+ G GS ++A +++ +K L Y L+ L
Sbjct: 266 MKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVEL---MKQTNVLPDLCTYNILINGLCN 322
Query: 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300
AG E L + + M + L PD+ Y+++ ++GL E KL+E+M K +
Sbjct: 323 AGSMREGLELMDAM-KSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQV 381
Query: 301 MH-----------------RKNWDPV----LEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
H RK + V PD+V Y+ ++ A + G + ++
Sbjct: 382 THNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE 441
Query: 340 LRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399
+ + G+K + T ++ + + K D H K G + +TY L+ F+ E K
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEK 501
Query: 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK--PLEIT 457
+ +A+ M++ + T S + L LC++G+ + AM EK L S P + T
Sbjct: 502 VEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAM---EKFDELAESGLLPDDST 558
Query: 458 FTGLIISSMDGGHIDDCISIF-QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFE--- 513
F +I+ G ++ + + +K +P+ T N +L + M KA F
Sbjct: 559 FNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLI 618
Query: 514 -----ETTRANS------------SGYTFLSG-DGAPLKPDEYTYSSML 544
+T N+ Y LS + L+PD +TY+S +
Sbjct: 619 EEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFI 667
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 44/315 (13%)
Query: 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301
G+PH AL+IF M+ L P++ +++ + GL++ PS +
Sbjct: 145 GKPHVALQIFQKMIR-LKLKPNLLTCNTLLI-----GLVR-----------YPSSFSISS 187
Query: 302 HRKNWDPVLEP----DLVVYNAVLNA-CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356
R+ +D +++ ++ +N ++N C+ + + + + + + P TY +
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 357 EVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416
+ M + G+ + E M K+G +TY LV + + G + EA V M+Q V+
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307
Query: 417 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 476
Y L LCN G ++ + +++ +KSL+ +P +T+ LI + G +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKL-QPDVVTYNTLIDGCFELGLSLEARK 366
Query: 477 IFQHMK-DHCEPNIGTVNAMLKVYS----RNDMFSKAKELFEETTRANSSGYTFLSGDGA 531
+ + M+ D + N T N LK R + K KEL D
Sbjct: 367 LMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELV----------------DMH 410
Query: 532 PLKPDEYTYSSMLEA 546
PD TY ++++A
Sbjct: 411 GFSPDIVTYHTLIKA 425
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/391 (18%), Positives = 145/391 (37%), Gaps = 29/391 (7%)
Query: 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301
G+ +AL + M+ + + PD Y+++ + + G L +L +L+ M++
Sbjct: 218 GKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNG------- 270
Query: 302 HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ 361
L P+ V YN ++ K F + + ++++ + P TY + + +
Sbjct: 271 --------LVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCN 322
Query: 362 SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 421
+G E M +TY L+ +E G EA + ME GV
Sbjct: 323 AGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVT 382
Query: 422 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM 481
+ LC + + V+++ + P +T+ LI + + G + + + + M
Sbjct: 383 HNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM 442
Query: 482 -KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 540
+ + N T+N +L + +A L A+ G+ DE TY
Sbjct: 443 GQKGIKMNTITLNTILDALCKERKLDEAHNLL---NSAHKRGFIV----------DEVTY 489
Query: 541 SSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 600
+++ + E ++ M + L+ GK L FD L E
Sbjct: 490 GTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAE 549
Query: 601 AGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 631
+G +P F +++ + EKA N
Sbjct: 550 SGLLPDDSTFNSIILGYCKEGRVEKAFEFYN 580
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 17/208 (8%)
Query: 347 PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRA---FWEEGKINEA 403
PS A + +A+ L GK + + F+KM + LT L+ + I+ A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188
Query: 404 VAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 463
+M + GV + L C G+ +DA+ ++E++ S P +T+ ++
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILK 248
Query: 464 SSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSG 522
+ G + D + MK + PN T N ++ Y + +A ++ E + N
Sbjct: 249 AMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTN--- 305
Query: 523 YTFLSGDGAPLKPDEYTYSSMLEASATA 550
+ PD TY+ ++ A
Sbjct: 306 ----------VLPDLCTYNILINGLCNA 323
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
L PD +N+++ + + F + + K KP T + + + + G +
Sbjct: 552 LLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKAL 611
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
FF + + E + +TY ++ AF ++ K+ EA + ME++G+ Y L
Sbjct: 612 NFFNTLIEERE-VDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLL 670
Query: 430 CNNGRWQDA 438
+G+ +
Sbjct: 671 MEDGKLSET 679
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
E D V YN +++A + K + + ++ + GL+P TY + ++++ GK E
Sbjct: 622 EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDE 681
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
+K SG+ + + R E + N A + + + + V E LC
Sbjct: 682 LLKKF--SGK------FGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDE----LC 729
Query: 431 NNGRWQD 437
+ GR ++
Sbjct: 730 SRGRLKE 736
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 140/320 (43%), Gaps = 21/320 (6%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ GL + G W +L + G + + ++ L+ + K G+ EA ++N M+
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIG---RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ PD Y+S+ + L E ++ + M K EPD+V
Sbjct: 343 TR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC---------------EPDIV 386
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375
Y+ ++N+ + + +F+++ GL P+ TY + QSGK + E F++M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 376 AKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435
G +TY +L+ + G++N+A+ M++ + +Y + +CN +
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506
Query: 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNA 494
DA + + S + KP +T+ +I G + + +F+ MK D C P+ T N
Sbjct: 507 DDAWSLFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 565
Query: 495 MLKVYSRNDMFSKAKELFEE 514
+++ + + EL EE
Sbjct: 566 LIRAHLGGSGLISSVELIEE 585
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/373 (18%), Positives = 155/373 (41%), Gaps = 30/373 (8%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
PD + ++ G + E V L++RM + + PDLV + ++
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR---------------PDLVTVSTLI 182
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
N + + ++ + G +P TYG + + +SG L + FRKM +
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 242
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 441
+ Y +++ + ++G ++A++ ME +G+ Y L LCN+G+W D +
Sbjct: 243 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 302
Query: 442 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYS 500
+ ++ R+ P +TF+ LI + G + + ++ M P+ T N+++ +
Sbjct: 303 LREMIG-RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361
Query: 501 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 560
+ + +A ++F+ +PD TYS ++ + A + + ++
Sbjct: 362 KENCLHEANQMFDLMVSKGC-------------EPDIVTYSILINSYCKAKRVDDGMRLF 408
Query: 561 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 620
+ ++ G + + L++ ++GK + + F ++ G P + + +L
Sbjct: 409 REISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 468
Query: 621 SNYEKAVALINAM 633
KA+ + M
Sbjct: 469 GELNKALEIFEKM 481
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/409 (21%), Positives = 157/409 (38%), Gaps = 47/409 (11%)
Query: 196 LLKGLGDKGSWRQAMSVLDWV--YGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL 253
L+ GL KG +A+ ++D + YG + Y +L L K+G AL +F
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQ-----PDEVTYGPVLNRLCKSGNSALALDLFRK 235
Query: 254 MLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313
M E+ N+ + Y V +L + G + + L M K K D
Sbjct: 236 M-EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIK---------------AD 279
Query: 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFR 373
+V Y++++ +W + +++ + P T+ ++V ++ GK E +
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 374 KMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 433
+M G A +TY L+ F +E ++EA M +G Y L C
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399
Query: 434 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTV 492
R D M + +I S + P IT+ L++ G ++ +FQ M P++ T
Sbjct: 400 RVDDGMRLFREISS-KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 493 NAMLKVYSRNDMFSKAKELFEE----------------------TTRANSSGYTFLSGDG 530
+L N +KA E+FE+ ++ + + F S
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 531 APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 579
+KPD TY+ M+ + +++ M GC D + L+
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/343 (17%), Positives = 131/343 (38%), Gaps = 52/343 (15%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
+E D+ ++N + F V + K G +P T+ + G+
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAV 160
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV---------------------- 407
+M + + +T L+ +G+++EA+ +
Sbjct: 161 ALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRL 220
Query: 408 -------------RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 454
R ME+R + + Y + LC +G + DA+ + +++ ++ K
Sbjct: 221 CKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME-MKGIKAD 279
Query: 455 EITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFE 513
+T++ LI + G DD + + M + P++ T +A++ V+ + +AKEL+
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 514 E-TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 572
E TR + PD TY+S+++ + ++ M GC+ D
Sbjct: 340 EMITRG--------------IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDI 385
Query: 573 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLI 615
++ L+ +A + F + G IP+ + + +++
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVL 428
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/341 (20%), Positives = 142/341 (41%), Gaps = 36/341 (10%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
P + +N + +A + Q+ V K + +G++ T + + + K
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 127
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN---MEQRGVVGTASVYYELACC 428
+ K G +T+ LV F EG+++EAVA V M+QR + T S L
Sbjct: 128 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVST---LING 184
Query: 429 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEP 487
LC GR +A+++++++ +P E+T+ ++ G+ + +F+ M++ + +
Sbjct: 185 LCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA 243
Query: 488 NIGTVNAMLKVYSRNDMFSKAKELFEET----TRANSSGYTFLSG---------DGAP-- 532
++ + ++ ++ F A LF E +A+ Y+ L G DGA
Sbjct: 244 SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKML 303
Query: 533 -------LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA 585
+ PD T+S++++ + + +Y M G D + L+ +
Sbjct: 304 REMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 363
Query: 586 GKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKA 626
H FD ++ G P +++ +I+ ++Y KA
Sbjct: 364 NCLHEANQMFDLMVSKGCEP------DIVTYSILINSYCKA 398
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 21/204 (10%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y+ L+ KA R + +R+F + L P+ Y+++ + Q G L +L + M
Sbjct: 388 YSILINSYCKAKRVDDGMRLFR-EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 291 --RQKPSKRIK------------------NMHRKNWDPVLEPDLVVYNAVLNACVPSHQW 330
R P + + K + + +YN +++ + +
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390
+ +F L G+KP TY + + + + G FRKM + G TY +L
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566
Query: 391 VRAFWEEGKINEAVAAVRNMEQRG 414
+RA + +V + M+ G
Sbjct: 567 IRAHLGGSGLISSVELIEEMKVCG 590
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/370 (20%), Positives = 157/370 (42%), Gaps = 32/370 (8%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
PD ++++ L + E ++L++RM + K P L+ N ++
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK---------------PTLITLNTLV 200
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
N + + + ++ ++G +P+ TYG + VM +SG+ L E RKM +
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD-AML 440
+ A+ Y +++ ++G ++ A ME +G Y L CN GRW D A L
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320
Query: 441 VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVY 499
+ + IK R P +TF+ LI S + G + + + + M PN T N+++ +
Sbjct: 321 LRDMIK--RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 500 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 559
+ + +A ++ + + G PD T++ ++ A++ + +
Sbjct: 379 CKENRLEEAIQMVD-----------LMISKGC--DPDIMTFNILINGYCKANRIDDGLEL 425
Query: 560 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619
++ M+L G + + L+ ++GK + + F ++ P + + +L
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485
Query: 620 QSNYEKAVAL 629
EKA+ +
Sbjct: 486 NGELEKALEI 495
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/378 (21%), Positives = 155/378 (41%), Gaps = 36/378 (9%)
Query: 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230
TA + +R M + + + ++ GL GS A ++ + + K D+
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI---IT 300
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ AGR + ++ M++ + P++ + + + + G L+E +L++ M
Sbjct: 301 YNTLIGGFCNAGRWDDGAKLLRDMIKR-KISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
Q+ + P+ + YN++++ ++ + + + G P
Sbjct: 360 MQRG---------------IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
T+ + + ++ + D E FR+M+ G +TY LV+ F + GK+ A + M
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM-DGG 469
R V Y L LC+NG + A+ + KI+ + L+I +II M +
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE--KSKMELDIGIYMIIIHGMCNAS 522
Query: 470 HIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528
+DD +F + + + N M+ R D SKA LF + T +
Sbjct: 523 KVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHA------- 575
Query: 529 DGAPLKPDEYTYSSMLEA 546
PDE TY+ ++ A
Sbjct: 576 ------PDELTYNILIRA 587
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/323 (16%), Positives = 132/323 (40%), Gaps = 15/323 (4%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
P ++ +N + +A + Q++ V + KQ+ G+ S T + + + K
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
K+ K G + + L+ E +++EA+ V M + G T L LC
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIG 490
NG+ DA+++++++ +P E+T+ ++ G + + + M++ + + +
Sbjct: 206 NGKVSDAVVLIDRMVETGF-QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV 264
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550
+ ++ ++ A LF E G+ K D TY++++ A
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEM---EIKGF----------KADIITYNTLIGGFCNA 311
Query: 551 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 610
+W+ + + M + + L+ + GK + +++ G P+ + +
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 611 TEMLIQAIVQSNYEKAVALINAM 633
++ ++ E+A+ +++ M
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLM 394
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ ++G+ A ++F M+ + PDI +Y + L G L++ +++ ++
Sbjct: 441 YNTLVQGFCQSGKLEVAKKLFQEMVSR-RVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
+ +E D+ +Y +++ + + + +F L G+K A
Sbjct: 500 EKSK---------------MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDAR 544
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
Y + + + + FRKM + G A LTY +L+RA + A + M
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604
Query: 411 EQRG 414
+ G
Sbjct: 605 KSSG 608
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 6/211 (2%)
Query: 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL 367
P +P + +YN +L +C+ + + V W++K + G+ P T+ L + + S D
Sbjct: 106 PENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDA 165
Query: 368 VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 427
E F +M + G T+ +LVR + + G ++ + + ME GV+ +Y +
Sbjct: 166 ARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVS 225
Query: 428 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK----- 482
C GR D+ +VEK++ P +TF I + G + D IF M+
Sbjct: 226 SFCREGRNDDSEKMVEKMRE-EGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYL 284
Query: 483 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFE 513
PN T N MLK + + + AK LFE
Sbjct: 285 GLPRPNSITYNLMLKGFCKVGLLEDAKTLFE 315
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/433 (20%), Positives = 169/433 (39%), Gaps = 60/433 (13%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNL---YPDIAAYHSVAVTLGQVGLLKELVKL 286
+ ++ L K G+ +A RIF+ M D L P+ Y+ + +VGLL++ L
Sbjct: 254 TFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTL 313
Query: 287 IERMRQ------------------KPSKRIK--NMHRKNWDPVLEPDLVVYNAVLNACVP 326
E +R+ + K I+ + ++ D + P + YN +++
Sbjct: 314 FESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCK 373
Query: 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALT 386
+ ++++G+ P A TYG + GK D ++M ++ A T
Sbjct: 374 LGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYT 433
Query: 387 YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC-CLCNNGRWQDAMLVVEKI 445
+L+ + W+ G+I+EA +R M ++G G +V + LC +G A +E +
Sbjct: 434 CNILLHSLWKMGRISEAEELLRKMNEKG-YGLDTVTCNIIVDGLCGSGELDKA---IEIV 489
Query: 446 KSLR-HSKP----LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 500
K +R H L ++ GL+ S+ ++++C P++ T + +L
Sbjct: 490 KGMRVHGSAALGNLGNSYIGLVDDSL--------------IENNCLPDLITYSTLLNGLC 535
Query: 501 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 560
+ F++AK LF E G L+PD Y+ + + V
Sbjct: 536 KAGRFAEAKNLFAEMM-------------GEKLQPDSVAYNIFIHHFCKQGKISSAFRVL 582
Query: 561 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 620
K M GC + L++ + + D + E G P+ + +
Sbjct: 583 KDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEG 642
Query: 621 SNYEKAVALINAM 633
E A L++ M
Sbjct: 643 EKVEDATNLLDEM 655
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/431 (19%), Positives = 167/431 (38%), Gaps = 62/431 (14%)
Query: 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256
L+GL G + +A +VL + DK S + Y L+ L K G +A I LM
Sbjct: 333 LQGLVRHGKFIEAETVLKQ---MTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR 389
Query: 257 DCNLYPDIAAYHSVA---VTLGQVGLLKELVKLIERMRQKPSKRIKN------------- 300
+ + PD Y + ++G+V K L++ + R P+ N
Sbjct: 390 N-GVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRIS 448
Query: 301 ----MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG------------ 344
+ RK + D V N +++ S + + K +R G
Sbjct: 449 EAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYI 508
Query: 345 -----------LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRA 393
P TY + + ++G++ F +M ++ Y + +
Sbjct: 509 GLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHH 568
Query: 394 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 453
F ++GKI+ A +++ME++G + Y L L + + +++++K + P
Sbjct: 569 FCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKE-KGISP 627
Query: 454 LEITFTGLIISSMDGGHIDDCISIF-QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 512
T+ I +G ++D ++ + M+ + PN+ + +++ + + F A+E+F
Sbjct: 628 NICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVF 687
Query: 513 EETTRAN-------SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 565
E S + L G LK E +LEA +E ++YK +
Sbjct: 688 ETAVSICGQKEGLYSLMFNELLAAGQLLKATE-----LLEA-VLDRGFELGTFLYKDLVE 741
Query: 566 SGCQLDQTKHA 576
S C+ D+ + A
Sbjct: 742 SLCKKDELEVA 752
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 534 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC-HLLE 592
KP Y Y+ +LE+ + E+ ++YK M L G QT LL+ A C
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIA-PQTYTFNLLIRALCDSSCVDAAR 167
Query: 593 HAFDSLLEAGEIPHPLFFTEMLIQAIVQSNY-EKAVALINAM 633
FD + E G P+ F +L++ ++ +K + L+NAM
Sbjct: 168 ELFDEMPEKGCKPNEFTFG-ILVRGYCKAGLTDKGLELLNAM 208
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 149/378 (39%), Gaps = 68/378 (17%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA-AYHSVAVTLGQVGLLKELVKLIER 289
Y L+ I + G R+ + M++D +P A ++ + + G+ GL K+ V ++
Sbjct: 152 YHLLMKIFAECGEYKAMWRLVDEMVQDG--FPTTARTFNLLICSCGEAGLAKQAV--VQF 207
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M+ K N+ P YNA+LN+ + Q+K + WV+KQ+ + G P
Sbjct: 208 MKSKTF---------NYRPFKHS----YNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDV 254
Query: 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409
TY + + + GK D F +MA+ G + + TY +L+ GK N+ +AA+
Sbjct: 255 LTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHIL---GKGNKPLAALTT 311
Query: 410 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469
+ VG P + +T LI G
Sbjct: 312 LNHMKEVGI---------------------------------DPSVLHYTTLIDGLSRAG 338
Query: 470 HIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528
+++ C M K C P++ M+ Y + KAKE+F E T
Sbjct: 339 NLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQ-------- 390
Query: 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
P+ +TY+SM+ A ++ ++ K M GC + ++ L+ +AGK
Sbjct: 391 -----LPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKL 445
Query: 589 HLLEHAFDSLLEAGEIPH 606
+++ G H
Sbjct: 446 SEARKVIREMVKKGHYVH 463
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 132/329 (40%), Gaps = 39/329 (11%)
Query: 145 WHPEKR-WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDK 203
W E+ +R + +L+ +E W+ V M Q G T L+ G+
Sbjct: 138 WSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEA 197
Query: 204 GSWRQAMSVLDWVYGLKDK----RDLKSRF--VYTKLLAILGKAGRPHEALR-IFNLMLE 256
G +QA+ V +K K R K + + LL + + ++ + ++ MLE
Sbjct: 198 GLAKQAV-----VQFMKSKTFNYRPFKHSYNAILNSLLGV-----KQYKLIEWVYKQMLE 247
Query: 257 DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ---KPSKRIKN--MH--RKNWDPV 309
D PD+ Y+ + T ++G + +L + M + P N +H K P+
Sbjct: 248 D-GFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPL 306
Query: 310 -------------LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356
++P ++ Y +++ + + + ++ K+G +P Y + +
Sbjct: 307 AALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMI 366
Query: 357 EVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416
+ SG+ D E FR+M G+ TY ++R G+ EA ++ ME RG
Sbjct: 367 TGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCN 426
Query: 417 GTASVYYELACCLCNNGRWQDAMLVVEKI 445
VY L L G+ +A V+ ++
Sbjct: 427 PNFVVYSTLVSYLRKAGKLSEARKVIREM 455
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 21/174 (12%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
+ Y LL ILGK +P AL N M ++ + P + Y ++ L + G L+ ++
Sbjct: 290 YTYNILLHILGKGNKPLAALTTLNHM-KEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLD 348
Query: 289 RMRQKPSK--------------------RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH 328
M + + + K M R+ P++ YN+++ +
Sbjct: 349 EMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAG 408
Query: 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAI 382
+++ W+ K++ G P+ Y + + ++GK + R+M K G +
Sbjct: 409 EFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYV 462
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 121/318 (38%), Gaps = 38/318 (11%)
Query: 340 LRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399
LR A LA L SG+ E FR S Y +L++ F E G+
Sbjct: 117 LRNLSYDNKARCAKLAYRFFLWSGE----QECFRHTVNS--------YHLLMKIFAECGE 164
Query: 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 459
V M Q G TA + L C G + A++ K K+ + +P + ++
Sbjct: 165 YKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNY-RPFKHSYN 223
Query: 460 GLIISSMDGGHIDDCIS-IFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517
I++S+ G I +++ M +D P++ T N +L R + LF+E R
Sbjct: 224 A-ILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMAR 282
Query: 518 ANSS--GYTF------LSGDGAPLK--------------PDEYTYSSMLEASATAHQWEY 555
S YT+ L PL P Y+++++ + A E
Sbjct: 283 DGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEA 342
Query: 556 FEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLI 615
+Y M +GC+ D + ++ +G+ + F + G++P+ + M+
Sbjct: 343 CKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIR 402
Query: 616 QAIVQSNYEKAVALINAM 633
+ + +A L+ M
Sbjct: 403 GLCMAGEFREACWLLKEM 420
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/412 (22%), Positives = 165/412 (40%), Gaps = 42/412 (10%)
Query: 173 KNWKFVRIMNQSGLM---FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229
K WK + +M + GL + G ++ LL + +A S + + L
Sbjct: 299 KVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS------EMIRQGILPDTV 352
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
VYT L+ K G A + F M ++ PD+ Y ++ Q+G + E KL
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M K LEPD V + ++N + K F V + ++G P+
Sbjct: 412 MFCKG---------------LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456
Query: 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409
TY ++ + + G D +E +M K G TY +V + G I EAV V
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 516
Query: 410 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469
E G+ Y L C +G A +++++ + +P +TF L+ G
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTIVTFNVLMNGFCLHG 575
Query: 470 HIDDCISIFQHM-KDHCEPNIGTVNAMLKVYS-RNDMFSKAKELFEETTRANSSGYTFLS 527
++D + M PN T N+++K Y RN++ +A ++ Y +
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL------------KAATAIYKDMC 623
Query: 528 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 579
G + PD TY ++++ A + ++++ M G + + ++ L+
Sbjct: 624 SRG--VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLI 673
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/463 (20%), Positives = 169/463 (36%), Gaps = 74/463 (15%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLML--------EDCNLYP------------------- 262
V+ +L G EA R+F ML + CN+Y
Sbjct: 177 VFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFRE 236
Query: 263 --------DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
++A+Y+ V + Q+G +KE L+ M K PD+
Sbjct: 237 FPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKG---------------YTPDV 281
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374
+ Y+ V+N + V+ + + +++ GLKP++ YG + ++ + K E F +
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 434
M + G + Y L+ F + G I A M R + Y + C G
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Query: 435 WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVN 493
+A + ++ + +P +TFT LI GH+ D + HM + C PN+ T
Sbjct: 402 MVEAGKLFHEM-FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 460
Query: 494 AMLKVYSRNDMFSKAKELFEETTRANSSGYTF--------------------LSG--DGA 531
++ + A EL E + F L G + A
Sbjct: 461 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 520
Query: 532 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLL 591
L D TY+++++A + + + + + K M G Q L+ G
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 580
Query: 592 EHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634
E + +L G P+ F ++ Q +++N + A A+ M
Sbjct: 581 EKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/423 (18%), Positives = 160/423 (37%), Gaps = 35/423 (8%)
Query: 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV-VYNAVLNACVPSHQWK 331
L GLL+E ++ E+M N+ VL D VY L+ ++
Sbjct: 184 VLVDFGLLREARRVFEKML-------------NYGLVLSVDSCNVYLTRLSK--DCYKTA 228
Query: 332 GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391
VF++ + G+ + A+Y + + + Q G+ H M G ++Y +V
Sbjct: 229 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 288
Query: 392 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 451
+ G++++ + M+++G+ + +Y + LC + +A ++ +R
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM--IRQG 346
Query: 452 K-PLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAK 509
P + +T LI G I F M P++ T A++ + + +A
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 406
Query: 510 ELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 569
+LF E F G L+PD T++ ++ A + V+ M +GC
Sbjct: 407 KLFHE---------MFCKG----LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453
Query: 570 LDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 629
+ + L+ + G + + G P+ + ++ N E+AV L
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513
Query: 630 INAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRA--L 687
+ A + +T L ++ DK +++L + + +T + L L
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573
Query: 688 HAL 690
H +
Sbjct: 574 HGM 576
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ K+G +A I ML L P I ++ + G+L++ KL+ M
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGK-GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
K + P+ +N+++ + K ++K + G+ P
Sbjct: 588 LAKG---------------IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 632
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
TY ++ ++ F++M G ++ TY VL++ F + K EA M
Sbjct: 633 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692
Query: 411 EQRGVVGTASVY 422
+ G+ ++
Sbjct: 693 RREGLAADKEIF 704
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 152/367 (41%), Gaps = 27/367 (7%)
Query: 225 LKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284
L+ R+ + L+ G AG E++++F M + + P + ++S+ L
Sbjct: 136 LQDRY-FNSLIRSYGNAGLFQESVKLFQTM-KQMGISPSVLTFNSL------------LS 181
Query: 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
L++R R + + + R+ + + PD +N ++N + F +FK +
Sbjct: 182 ILLKRGRTGMAHDLFDEMRRTYG--VTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYH 239
Query: 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAI--GALTYKVLVRAFWEEGKINE 402
P TY ++ + ++GK + H M K + ++Y LVR + + +I+E
Sbjct: 240 CNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDE 299
Query: 403 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM-LVVEKIKSLRHSKPLEITFTGL 461
AV +M RG+ A Y L L R+ + +++ + P TF L
Sbjct: 300 AVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNIL 359
Query: 462 IISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 520
I + D GH+D + +FQ M + P+ + + +++ + F +A+ LF E
Sbjct: 360 IKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKE- 418
Query: 521 SGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLV 580
L D KP Y+ M E + + E V++ + G Q D + L+
Sbjct: 419 ---VLLGKDEC--KPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLIT 472
Query: 581 EASRAGK 587
R GK
Sbjct: 473 GHCREGK 479
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/339 (18%), Positives = 127/339 (37%), Gaps = 34/339 (10%)
Query: 325 VPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA 384
VP+ + WV G ++ L +E + ++ ++ F + +
Sbjct: 80 VPADGLRFFDWV----SNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVK 135
Query: 385 LT---YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 441
L + L+R++ G E+V + M+Q G+ + + L L GR A +
Sbjct: 136 LQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDL 195
Query: 442 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYS 500
++++ P TF LI +D+ IF+ M+ HC P++ T N ++
Sbjct: 196 FDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLC 255
Query: 501 R-----------NDMFSKAKELFEETTRANS--SGY-----------TFLSGDGAPLKPD 536
R + M KA ++ + GY F LKP+
Sbjct: 256 RAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPN 315
Query: 537 EYTYSSMLEASATAHQWEYFEYVYKGM--ALSGCQLDQTKHAWLLVEASRAGKCHLLEHA 594
TY+++++ + AH+++ + + G A + D L+ AG
Sbjct: 316 AVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKV 375
Query: 595 FDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633
F +L P ++ ++ +++ +++A L N +
Sbjct: 376 FQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNEL 414
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 101/255 (39%), Gaps = 29/255 (11%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+K D G AM V + +K D S V + L + + R A +FN +
Sbjct: 359 LIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDR---AETLFNELF 415
Query: 256 E--------DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307
E +C P AAY+ + L G K+ K+ ++ M R D
Sbjct: 416 EKEVLLGKDECK--PLAAAYNPMFEYLCANGKTKQAEKVFRQL----------MKRGVQD 463
Query: 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL 367
P P Y ++ ++K + + + + P TY L ++ +L+ G+ L
Sbjct: 464 P---PS---YKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALL 517
Query: 368 VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 427
H+ ++M +S A T+ ++ + NE+ V M ++ + + ++
Sbjct: 518 AHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVR 577
Query: 428 CLCNNGRWQDAMLVV 442
L ++ + + A L+V
Sbjct: 578 LLFSSAQKEKAFLIV 592
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 132/305 (43%), Gaps = 15/305 (4%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+PD + +++ ++ + Q+ + G +P TYG + + + G DL
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
+KM K + Y ++ + +++A+ M+ +G+ Y L CLC
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
N GRW DA ++ + R P +TF+ LI + + G + + ++ M K +P+I
Sbjct: 305 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T ++++ + +D +AK +FE +S D P+ TYS++++
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFE----------LMISKD---CFPNVVTYSTLIKGFCK 410
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
A + E +++ M+ G + + L+ +A C + F ++ G P+ L
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470
Query: 610 FTEML 614
+ +L
Sbjct: 471 YNILL 475
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/479 (20%), Positives = 182/479 (37%), Gaps = 69/479 (14%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL G A++++D + + K D F +T L+ L + EA+ + + M+
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPD---TFTFTTLIHGLFLHNKASEAVALVDQMV 215
Query: 256 E-DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
+ C PD+ Y +V L + G + + L+++M + +E D+
Sbjct: 216 QRGCQ--PDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK---------------IEADV 258
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374
V+YN +++ +F ++ G++P TY + + G++
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSD 318
Query: 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 434
M + +T+ L+ AF +EGK+ EA M +R + Y L C + R
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 378
Query: 435 WQDAM----LVVEK------------IKSLRHSKPLE------------------ITFTG 460
+A L++ K IK +K +E +T+T
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTT 438
Query: 461 LIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519
LI D+ +F+ M PNI T N +L +N +KA +FE R+
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498
Query: 520 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 579
++PD YTY+ M+E A + E ++ ++L G + + ++
Sbjct: 499 -------------MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Query: 580 VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPF 638
R G + + E G +P+ + ++ + + E + LI M F
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGF 604
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 118/265 (44%), Gaps = 25/265 (9%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F Y+ L+ R EA +F LM+ +DC +P++ Y ++ + ++E ++L
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDC--FPNVVTYSTLIKGFCKAKRVEEGMELF 421
Query: 288 ERMRQK--------------------PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
M Q+ + + ++ + P+++ YN +L+ +
Sbjct: 422 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387
+ VF+ L++S ++P TY + +E M ++GK + E F ++ G + + Y
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541
Query: 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447
++ F +G EA + ++ M++ G + + Y L +G + + ++++++S
Sbjct: 542 NTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRS 601
Query: 448 LRHSKPLEITFTGLIISSMDGGHID 472
+ + + GL+ + + G +D
Sbjct: 602 CGFAG--DASTIGLVTNMLHDGRLD 624
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 113/530 (21%), Positives = 211/530 (39%), Gaps = 89/530 (16%)
Query: 214 DWVYGLKDKRDLKSRFVYTKLLAI------LGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267
D V L+ +K++ + ++A L KAGR EA +IF L+D L PD Y
Sbjct: 448 DSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF-YGLKDIGLVPDSVTY 506
Query: 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
+ + +VG + E +KL+ M + EPD++V N+++N +
Sbjct: 507 NMMMKCYSKVGEIDEAIKLLSEMMENGC---------------EPDVIVVNSLINTLYKA 551
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387
+ + +F ++++ LKP+ TY + + ++GK E F M + G +T+
Sbjct: 552 DRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITF 611
Query: 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447
L + ++ A+ + M G V Y + L NG+ ++AM ++K
Sbjct: 612 NTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK 671
Query: 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC---------EPNIGTVNA---- 494
L + P +T L+ + I+D I + +C E IG++ A
Sbjct: 672 LVY--PDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGI 729
Query: 495 -------------------------MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529
+++ +++ S A+ LFE+ T+
Sbjct: 730 DNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTK------------ 777
Query: 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCH 589
++P TY+ ++ A E + V+ + +GC D + +LL ++GK
Sbjct: 778 DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKID 837
Query: 590 LLEHAFDSL----LEAGEIPHPLFFTEMLIQAIVQS-NYEKAVAL-INAMAYAPFHITER 643
L + + EA I H ++I +V++ N + A+ L + M+ F T
Sbjct: 838 ELFELYKEMSTHECEANTITH-----NIVISGLVKAGNVDDALDLYYDLMSDRDFSPTAC 892
Query: 644 QWTELFE--SNEDRISRDK--LEKLLNALCNCNAASSEITVSNLSRALHA 689
+ L + S R+ K E +L+ C N A I ++ +A A
Sbjct: 893 TYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEA 942
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/463 (20%), Positives = 189/463 (40%), Gaps = 47/463 (10%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ GLG + M +L + L K ++ + +T + +LG+AG+ +EA I M
Sbjct: 229 LMVGLGKRRDIDSVMGLLKEMETLGLKPNV---YTFTICIRVLGRAGKINEAYEILKRM- 284
Query: 256 EDCNLYPDIAAYHSVA---VTLGQVGLLKELVKLIERMRQKPSK--RIKNMHR----KNW 306
+D PD+ Y + T ++ KE+ + ++ R KP + I + R ++
Sbjct: 285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDL 344
Query: 307 DPVLE-----------PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
D V + PD+V + +++A + + F +R G+ P+ TY
Sbjct: 345 DSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTL 404
Query: 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415
+ +L+ + D E F M G A TY V + + + G A+ M+ +G+
Sbjct: 405 ICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGI 464
Query: 416 ----VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI 471
V + Y LA GR ++A + +K + P +T+ ++ G I
Sbjct: 465 APNIVACNASLYSLA----KAGRDREAKQIFYGLKDIGLV-PDSVTYNMMMKCYSKVGEI 519
Query: 472 DDCISIF-QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 530
D+ I + + M++ CEP++ VN+++ + D +A ++F
Sbjct: 520 DEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK----------- 568
Query: 531 APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHL 590
LKP TY+++L + + +++GM GC + L + + L
Sbjct: 569 --LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTL 626
Query: 591 LEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633
+++ G +P + ++ + ++A+ + M
Sbjct: 627 ALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 165/406 (40%), Gaps = 53/406 (13%)
Query: 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK---SRFVYTKLLAILGKAGRPHEALRI 250
L + K L KG +QA Y L+ R+ + + Y L+ +L K+ EA+ +
Sbjct: 157 LTIFKSLSVKGGLKQA------PYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEV 210
Query: 251 FNLMLEDCNLYPDIAAYHSVAVTLGQ-------VGLLKELVKLIERMRQKP--------- 294
+ M+ + P + Y S+ V LG+ +GLLKE+ E + KP
Sbjct: 211 YRRMILE-GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM----ETLGLKPNVYTFTICI 265
Query: 295 -----SKRIKNMH---RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346
+ +I + ++ D PD+V Y +++A + + VF++++ K
Sbjct: 266 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHK 325
Query: 347 PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAA 406
P TY ++ + D V +F+ +M K G +T+ +LV A + G EA
Sbjct: 326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDT 385
Query: 407 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 466
+ M +G++ Y L C L R DA+ + ++SL KP T+ I
Sbjct: 386 LDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL-GVKPTAYTYIVFIDYYG 444
Query: 467 DGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 525
G + F+ MK PNI NA L ++ +AK++F
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG------ 498
Query: 526 LSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 571
L PD TY+ M++ + + + + M +GC+ D
Sbjct: 499 -------LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 125/292 (42%), Gaps = 23/292 (7%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ L +A A +F L ++ PD+A Y+ + G+ G + EL +L + M
Sbjct: 788 YNLLIGGLLEADMIEIAQDVF-LQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 291 RQKPSKRIKNMHR---------KNWDPVLE------------PDLVVYNAVLNACVPSHQ 329
+ H N D L+ P Y +++ S +
Sbjct: 847 STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906
Query: 330 WKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389
+F+ + G +P+ A Y + + ++G+ D F++M K G TY V
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966
Query: 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 449
LV G+++E + + +++ G+ Y + L + R ++A+++ ++K+ R
Sbjct: 967 LVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSR 1026
Query: 450 HSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYS 500
P T+ LI++ G +++ I+ + + EPN+ T NA+++ YS
Sbjct: 1027 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYS 1078
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 95/507 (18%), Positives = 188/507 (37%), Gaps = 80/507 (15%)
Query: 148 EKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207
E + + L++ L + + + WK M + L T LL GLG G +
Sbjct: 531 ENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQ 590
Query: 208 QAMSV--------------------------------LDWVYGLKDKRDLKSRFVYTKLL 235
+A+ + L ++ + D + F Y ++
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Query: 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS 295
L K G+ EA+ F+ M + +YPD ++ + + L+++ K+I +
Sbjct: 651 FGLVKNGQVKEAMCFFHQMKK--LVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCA 708
Query: 296 KRIKNMHRKNWDPVLEPDL--------------VVYNAVL----NACVPSHQWK------ 331
+ N+ W+ ++ L +V N + + VP ++
Sbjct: 709 DQPANLF---WEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNV 765
Query: 332 -GVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389
G +F++ K G++P TY L + +L++ ++ + F ++ +G TY
Sbjct: 766 SGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNF 825
Query: 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 449
L+ A+ + GKI+E + M + + L G DA+ + + S R
Sbjct: 826 LLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 450 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKA 508
P T+ LI G + + +F+ M D+ C PN N ++ + + A
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945
Query: 509 KELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGC 568
LF+ + ++PD TYS +++ + + + +K + SG
Sbjct: 946 CALFKRMVKEG-------------VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992
Query: 569 QLDQTKHAWLLVEASRAGKCHLLEHAF 595
D + ++ + GK H LE A
Sbjct: 993 NPDVVCYNLII---NGLGKSHRLEEAL 1016
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/345 (19%), Positives = 135/345 (39%), Gaps = 17/345 (4%)
Query: 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYD 366
D ++P L YN ++ + + + VF Q++ +G P ATY ++ +SGK D
Sbjct: 778 DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKID 837
Query: 367 LVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN-MEQRGVVGTASVYYEL 425
+ E +++M+ +T+ +++ + G +++A+ + M R TA Y L
Sbjct: 838 ELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPL 897
Query: 426 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDH 484
L +GR +A + E + +P + LI G D ++F+ M K+
Sbjct: 898 IDGLSKSGRLYEAKQLFEGMLDY-GCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956
Query: 485 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML 544
P++ T + ++ + F+E + L PD Y+ ++
Sbjct: 957 VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG-------------LNPDVVCYNLII 1003
Query: 545 EASATAHQWEYFEYVYKGMALS-GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGE 603
+H+ E ++ M S G D + L++ AG ++ + AG
Sbjct: 1004 NGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGL 1063
Query: 604 IPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 648
P+ F ++ + E A A+ M F + +L
Sbjct: 1064 EPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 32/255 (12%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFNLM 254
++ GL G+ A LD Y L RD + Y L+ L K+GR +EA ++F M
Sbjct: 861 VISGLVKAGNVDDA---LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM 917
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ---KPSKRI------------- 298
L D P+ A Y+ + G+ G L +RM + +P +
Sbjct: 918 L-DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 299 --KNMH--RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYG 353
+ +H ++ + L PD+V YN ++N SH+ + +F +++ S G+ P TY
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 354 LAMEVMLQSGKYDLVHE---FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
++L G +V E + ++ ++G T+ L+R + GK A A + M
Sbjct: 1037 ---SLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
Query: 411 EQRGVVGTASVYYEL 425
G Y +L
Sbjct: 1094 VTGGFSPNTGTYEQL 1108
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 128/303 (42%), Gaps = 18/303 (5%)
Query: 334 FWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392
F FK + + L + T +E + GK + + F M K TY + +
Sbjct: 102 FSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFK 161
Query: 393 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 452
+ +G + +A A+R M + G V A Y L L + +AM V ++ L +
Sbjct: 162 SLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM-ILEGFR 220
Query: 453 PLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKEL 511
P T++ L++ ID + + + M+ +PN+ T ++V R K E
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRA---GKINEA 277
Query: 512 FEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 571
+E R + G PD TY+ +++A TA + + + V++ M + D
Sbjct: 278 YEILKRMDDEG----------CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPD 327
Query: 572 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQS-NYEKAVALI 630
+ + LL S ++ + + + G +P + FT +L+ A+ ++ N+ +A +
Sbjct: 328 RVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT-ILVDALCKAGNFGEAFDTL 386
Query: 631 NAM 633
+ M
Sbjct: 387 DVM 389
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 159/369 (43%), Gaps = 37/369 (10%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
YT L+ L + +A + MLE L P++ Y+++ + G++++ V ++E
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEK-GLMPNVITYNALINGYCKRGMIEDAVDVVEL 418
Query: 290 MRQK---PSKRIKNMHRKNW------------DPVLE----PDLVVYNAVLNACVPSHQW 330
M + P+ R N K + + +LE PD+V YN++++ S +
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390
+ + + GL P TY ++ + +S + + + F + + G + Y L
Sbjct: 479 DSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTAL 538
Query: 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRH 450
+ + + GK++EA + M + + + + L LC +G+ ++A L+ EK+ +
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI-G 597
Query: 451 SKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAK 509
+P T T LI + G D S FQ M +P+ T ++ Y R A+
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657
Query: 510 ELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 569
++ + R N + PD +TYSS+++ Q + V K M +GC+
Sbjct: 658 DMMAK-MRENG------------VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCE 704
Query: 570 LDQTKHAWL 578
Q H +L
Sbjct: 705 PSQ--HTFL 711
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/454 (20%), Positives = 189/454 (41%), Gaps = 60/454 (13%)
Query: 193 MLKLLKGLGDKGSWRQAMSVLDWVYGL-KDKR-DLKSRFV---YTKLLAILGKAGRPHEA 247
M+K +GD A+ VLD + KD+R +LK + + Y LL L + G E
Sbjct: 149 MIKSCDSVGD------ALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEM 202
Query: 248 LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---------PSKRI 298
+++ MLED + P+I Y+ + ++G ++E + + ++ + S +
Sbjct: 203 KQVYMEMLED-KVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261
Query: 299 KNMHRKNWDPVLEP-----------DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
RK+ D + + V Y +++ + + +F +++ P
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP 321
Query: 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407
+ TY + ++ + S + ++M ++G TY VL+ + + K +A +
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 408 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 467
M ++G++ Y L C G +DA+ VVE ++S R P T+ LI
Sbjct: 382 GQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES-RKLSPNTRTYNELI----- 435
Query: 468 GGHIDDCISIFQHMKDHCEPNI----GTVNAMLKVYSRNDMFSKAKELFEETTRANS--S 521
K +C+ N+ G +N ML+ D+ + L + R+ + S
Sbjct: 436 --------------KGYCKSNVHKAMGVLNKMLERKVLPDVVT-YNSLIDGQCRSGNFDS 480
Query: 522 GYTFLS-GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLV 580
Y LS + L PD++TY+SM+++ + + E ++ + G + + L+
Sbjct: 481 AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540
Query: 581 EASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
+AGK + +L +P+ L F ++
Sbjct: 541 GYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/341 (20%), Positives = 138/341 (40%), Gaps = 50/341 (14%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
L P+ V +NA+++ + +K +F + GL PS +YG+ ++ + ++ ++DL
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 388
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
F+ +M ++G +G +TY ++ + G ++EAV + M + G+ Y L
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448
Query: 430 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ------HMKD 483
C GR++ A +V +I + S P I ++ LI + G + + I I++ H +D
Sbjct: 449 CKVGRFKTAKEIVCRIYRVGLS-PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507
Query: 484 H----------CE--------------------PNIGTVNAMLKVYSRNDMFSKAKELFE 513
H C+ PN + + ++ Y + KA +F+
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567
Query: 514 ETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 573
E T+ P +TY S+L+ E K + +D
Sbjct: 568 EMTKVGH-------------HPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV 614
Query: 574 KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
+ LL ++G F +++ +P +T ++
Sbjct: 615 MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 173/435 (39%), Gaps = 37/435 (8%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
P I Y++V + G K ++L++ M+ K ++ D+ YN ++
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG---------------VDADVCTYNMLI 270
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
+ S++ + + + +RK + P+ TY + GK + + +M G +
Sbjct: 271 HDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS 330
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 441
+T+ L+ EG EA+ ME +G+ + Y L LC N + A
Sbjct: 331 PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF 390
Query: 442 VEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVY 499
++K R+ + IT+TG+I G +D+ + + M KD +P+I T +A++ +
Sbjct: 391 YMRMK--RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448
Query: 500 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 559
+ F AKE+ R L P+ YS+++ + +
Sbjct: 449 CKVGRFKTAKEIVCRIYRVG-------------LSPNGIIYSTLIYNCCRMGCLKEAIRI 495
Query: 560 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619
Y+ M L G D L+ +AGK E + G +P+ + F + LI
Sbjct: 496 YEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF-DCLINGYG 554
Query: 620 QSNYE-KAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEI 678
S KA ++ + M H T + L + + EK L +L AA +
Sbjct: 555 NSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV 614
Query: 679 TVSNLSRALHALCRS 693
+ L L A+C+S
Sbjct: 615 MYNTL---LTAMCKS 626
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
P + NA+L + V S + V+ K++ K + P AT+ + + V+ G ++
Sbjct: 154 FNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSS 213
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
+KM KSG A +TY ++ + ++G+ A+ + +M+ +GV Y L L
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273
Query: 430 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPN 488
C + R L++ ++ R P E+T+ LI + G + + M PN
Sbjct: 274 CRSNRIAKGYLLLRDMRK-RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPN 332
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 548
T NA++ + F +A ++F + L P E +Y +L+
Sbjct: 333 HVTFNALIDGHISEGNFKEALKMFYMM-------------EAKGLTPSEVSYGVLLDGLC 379
Query: 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 579
+++ Y M +G + + + ++
Sbjct: 380 KNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/411 (19%), Positives = 158/411 (38%), Gaps = 42/411 (10%)
Query: 138 YFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLL 197
Y A +E H + VLV L + A+ +F+R M G++ L+
Sbjct: 496 YEAMILEGHTRDHF-----TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Query: 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257
G G+ G +A SV D + + + F Y LL L K G EA + L+
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHH---PTFFTYGSLLKGLCKGGHLREAEKF----LKS 603
Query: 258 CNLYP---DIAAYHSVAVTLGQVGLLKELVKLIERMRQKP--------SKRIKNMHRKNW 306
+ P D Y+++ + + G L + V L M Q+ + I + RK
Sbjct: 604 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK 663
Query: 307 DPV-------------LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
+ + P+ V+Y ++ + QWK + +Q+ G P T
Sbjct: 664 TVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTN 723
Query: 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR 413
++ + GK + ++ +M TY +L+ + + ++ + R++
Sbjct: 724 AMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILN 783
Query: 414 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID- 472
G++ + L +C + + + +++ R + TF LI G I+
Sbjct: 784 GILPDKLTCHSLVLGICESNMLEIGLKILKAFIC-RGVEVDRYTFNMLISKCCANGEINW 842
Query: 473 --DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSS 521
D + + + + + T +AM+ V +RN F +++ + E ++ S
Sbjct: 843 AFDLVKVMTSLGISLDKD--TCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 891
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 119/301 (39%), Gaps = 17/301 (5%)
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
+F+ + G PS T + +++SG+ V F ++M K T+ +L+
Sbjct: 145 IFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLC 204
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
EG ++ ++ ME+ G T Y + C GR++ A+ +++ +KS +
Sbjct: 205 AEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKS-KGVDADV 263
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514
T+ LI I + + M K PN T N ++ +S A +L E
Sbjct: 264 CTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNE 323
Query: 515 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 574
L P+ T++++++ + ++ ++ M G +
Sbjct: 324 MLSFG-------------LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370
Query: 575 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNY-EKAVALINAM 633
+ LL + + L + + G + +T M I + ++ + ++AV L+N M
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGM-IDGLCKNGFLDEAVVLLNEM 429
Query: 634 A 634
+
Sbjct: 430 S 430
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
L P + + +++ C + + + GLK +Y + + + G L
Sbjct: 960 LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1019
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFW-EEGKINEAVAAVRNMEQRGVVGTASVYYELACC 428
E + +M G A TYK L+R E + A ++++ RG + + S+
Sbjct: 1020 ELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILKDLLARGFITSMSL------- 1072
Query: 429 LCNNGRWQDAMLVVEKIKSLRHSK 452
+ ++ + +EK+K+L+ +K
Sbjct: 1073 --SQDSHRNLKMAMEKLKALQSNK 1094
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/373 (20%), Positives = 159/373 (42%), Gaps = 72/373 (19%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
+ YT+L+ LGKAGR EA + ML D L PD+ +++ LG+VG ++EL +
Sbjct: 304 YTYTELIKGLGKAGRVDEAYGFYKDMLRD-GLTPDVVFLNNLMNILGKVGRVEELTNVFS 362
Query: 289 RM---RQKPSKRIKNMHRK-------------NWDPVLEPDLV-----VYNAVLNACVPS 327
M R P+ N K +W ++ D V Y+ +++ +
Sbjct: 363 EMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKT 422
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387
++ + + +++ + G P A Y + + ++ +Y+ +E F+++ ++ + + Y
Sbjct: 423 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVY 482
Query: 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447
V+++ F + GK++EAV M+ +G
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQG--------------------------------- 509
Query: 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFS 506
S P + L+ + G I++ S+ + M+++ C +I + N +L ++R +
Sbjct: 510 ---SGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPR 566
Query: 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS 566
+A E+FE + +KPD TY+++L A A +E + + M
Sbjct: 567 RAIEMFETIKHSG-------------IKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDK 613
Query: 567 GCQLDQTKHAWLL 579
G + D ++ +L
Sbjct: 614 GFEYDAITYSSIL 626
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/567 (16%), Positives = 226/567 (39%), Gaps = 83/567 (14%)
Query: 128 LDDDVQLGSDYFAKNVEWHPEKR-WRSEAEAIRVLVDRLSEREMTAKNWKFVR-IMNQSG 185
+D ++ + +F +W ++R ++ + L+ L E + + ++ ++ ++ +
Sbjct: 102 IDVEINVKIQFF----KWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTY 157
Query: 186 LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245
+ + + +L+K LG +A+SV Y K ++ + Y ++ +L + G+
Sbjct: 158 VSVSPAVLSELVKALGRAKMVSKALSVF---YQAKGRKCKPTSSTYNSVILMLMQEGQHE 214
Query: 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305
+ ++ M + + +PD Y ++ + ++G ++L + M+
Sbjct: 215 KVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMK-------------- 260
Query: 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKY 365
D ++P +Y +L + + +F++++++G P+ TY ++ + ++G+
Sbjct: 261 -DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319
Query: 366 DLVHEFFRKMAKSG------------EAIG-----------------------ALTYKVL 390
D + F++ M + G +G ++Y +
Sbjct: 320 DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTV 379
Query: 391 VRAFWE-EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 449
++A +E + ++E + M+ V + Y L C R + A+L++E++ +
Sbjct: 380 IKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDE-K 438
Query: 450 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA-----MLKVYSRNDM 504
P + LI + + +F+ +K+ N G V++ M+K + +
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAANELFKELKE----NFGNVSSRVYAVMIKHFGKCGK 494
Query: 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 564
S+A +LF E S PD Y Y++++ A + + M
Sbjct: 495 LSEAVDLFNEMKNQGSG-------------PDVYAYNALMSGMVKAGMINEANSLLRKME 541
Query: 565 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYE 624
+GC+ D H +L +R G F+++ +G P + + +L +E
Sbjct: 542 ENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601
Query: 625 KAVALINAMAYAPFHITERQWTELFES 651
+A ++ M F ++ + ++
Sbjct: 602 EAARMMREMKDKGFEYDAITYSSILDA 628
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/417 (22%), Positives = 187/417 (44%), Gaps = 46/417 (11%)
Query: 158 IRVLVDRLSEREMTAKNW-KFVRIM--NQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLD 214
+R L+ R+S+RE K K+V+++ + L+F E LG W Q + V
Sbjct: 71 VRSLMSRISDREPLVKTLDKYVKVVRCDHCFLLFEE---------LGKSDKWLQCLEVFR 121
Query: 215 WVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274
W+ K + + VY+KL++++GK G+ A+ +F+ M ++ PD + Y+++
Sbjct: 122 WMQ--KQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEM-KNSGCRPDASVYNALITAH 178
Query: 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334
++ K +E++R K +K + R +P++V YN +L A S + V
Sbjct: 179 LHT---RDKAKALEKVRGYLDK-MKGIER------CQPNVVTYNILLRAFAQSGKVDQVN 228
Query: 335 WVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF 394
+FK L S + P T+ M+ ++G + +M + +T+ VL+ ++
Sbjct: 229 ALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSY 288
Query: 395 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ---DAMLVVEKIKSLRHS 451
++ + + +++ + T + + + N G+ + A V +K+ + +
Sbjct: 289 GKKQEFEKMEQTFKSLMRSKEKPTLPTFNSM---IINYGKARMIDKAEWVFKKMNDMNYI 345
Query: 452 KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP-NIGTVNAMLKVYSRNDMFSKAKE 510
P IT+ +I+ G + IF+ + + T+NAML+VY RN ++ +A +
Sbjct: 346 -PSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADK 404
Query: 511 LFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567
LF N+S + + PD TY + +A A E + + K M G
Sbjct: 405 LFH-----NASAFR--------VHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDG 448
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 102/251 (40%), Gaps = 45/251 (17%)
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG-- 468
+QR + VY +L + G+ + AM + ++K+ +P + LI + +
Sbjct: 125 KQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKN-SGCRPDASVYNALITAHLHTRD 183
Query: 469 ---------GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519
G++D I + C+PN+ T N +L+ ++++ + LF++
Sbjct: 184 KAKALEKVRGYLDKMKGI-----ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDL---- 234
Query: 520 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 579
D +P+ PD YT++ +++A + E V M + C+ D L+
Sbjct: 235 ---------DMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLI 285
Query: 580 VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL---------I 630
+ + +E F SL+ + E P F M+I NY KA + +
Sbjct: 286 DSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMII------NYGKARMIDKAEWVFKKM 339
Query: 631 NAMAYAPFHIT 641
N M Y P IT
Sbjct: 340 NDMNYIPSFIT 350
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 104/506 (20%), Positives = 211/506 (41%), Gaps = 51/506 (10%)
Query: 181 MNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240
M SGL+ L++G + + RQ +L +K + + S + Y ++ +
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELL---VEMKKRNIVISPYTYGTVVKGMCS 429
Query: 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300
+G A I M+ P++ Y ++ T Q + +++++ M+++
Sbjct: 430 SGDLDGAYNIVKEMIAS-GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG------ 482
Query: 301 MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVML 360
+ PD+ YN+++ + + ++ ++GLKP+A TYG + +
Sbjct: 483 ---------IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYI 533
Query: 361 QSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 420
++ ++ ++ ++M + G + L+ + ++GK+ EA +A R+M +G++G A
Sbjct: 534 EASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAK 593
Query: 421 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 480
Y L L N + DA + +++ + P ++ LI G++ SIF
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRG-KGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 481 M-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT----RANSSGYTFL------SGD 529
M ++ PN+ N +L + R+ KAKEL +E + N+ Y + SGD
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 530 GAP------------LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 577
A L PD + Y+++++ + E ++ G GC
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNA 771
Query: 578 LLVEASRAGKCHLLEHAFDSLLEA-----GEIPHPLFFTEMLIQAIVQSNYEKAVALINA 632
L+ + GK L + L++ G+ P+ + + M+ + N E A L +
Sbjct: 772 LINWVFKFGKTELKTEVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQ 830
Query: 633 MAYAPFHITERQWTELFESNEDRISR 658
M A T +T L + D++ R
Sbjct: 831 MQNANLMPTVITYTSLL-NGYDKMGR 855
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 127/347 (36%), Gaps = 32/347 (9%)
Query: 322 NACVPSHQWKGVF----WVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK 377
+ C+ +GV +F + SGL P A Y +E + +E +M K
Sbjct: 351 DCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKK 410
Query: 378 SGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 437
I TY +V+ G ++ A V+ M G +Y L N R+ D
Sbjct: 411 RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGD 470
Query: 438 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAML 496
AM V++++K + P + LII +D+ S M ++ +PN T A +
Sbjct: 471 AMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Query: 497 KVYSRNDMFSKA----KELFEETTRAN--------------------SSGYTFLSGDGAP 532
Y F+ A KE+ E N S Y + G
Sbjct: 530 SGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG-- 587
Query: 533 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLE 592
+ D TY+ ++ + + E +++ M G D + L+ S+ G
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647
Query: 593 HAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFH 639
FD ++E G P+ + + +L EKA L++ M+ H
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 16/221 (7%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
++ G G +A + D +K K + FVYT L+ + A+ IF
Sbjct: 703 IIDGYCKSGDLAEAFRLFDE---MKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK 759
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ C A ++++ + + G + +++ R+ ++D +P+ V
Sbjct: 760 KGCA--SSTAPFNALINWVFKFGKTELKTEVLNRLMDG-----------SFDRFGKPNDV 806
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375
YN +++ + +F Q++ + L P+ TY + + G+ + F +
Sbjct: 807 TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEA 866
Query: 376 AKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416
+G + Y V++ AF +EG +A+ V M + V
Sbjct: 867 IAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAV 907
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/431 (20%), Positives = 153/431 (35%), Gaps = 102/431 (23%)
Query: 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKR 297
L K G+ EAL ++E N PD Y + L + L +E + + RMR
Sbjct: 280 LCKVGKWREALT----LVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCL- 334
Query: 298 IKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357
P++V Y+ +L C+ Q V + G PS + +
Sbjct: 335 --------------PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVH 380
Query: 358 VMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV-------------------------- 391
SG + ++ +KM K G G + Y +L+
Sbjct: 381 AYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEML 440
Query: 392 ---------------RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 436
R GK +A + +R M +G + S Y ++ LCN + +
Sbjct: 441 AAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKME 500
Query: 437 DAMLVVEKIKSLRHSKPLEI-TFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNA 494
A L+ E++K R ++ T+T ++ S G I+ F M++ C PN+ T A
Sbjct: 501 LAFLLFEEMK--RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558
Query: 495 MLKVYSRNDMFSKAKELFE----ETTRANSSGYT-------------------------- 524
++ Y + S A ELFE E N Y+
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618
Query: 525 --------FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 576
F D +P+ TY ++L+ +H+ E + M++ GC+ +Q +
Sbjct: 619 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 678
Query: 577 WLLVEASRAGK 587
L+ + GK
Sbjct: 679 ALIDGLCKVGK 689
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/351 (19%), Positives = 138/351 (39%), Gaps = 32/351 (9%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
PD Y+ VLN + + + F +F+++++ GL TY + ++ ++G + ++
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
F +M + G +TY L+ A+ + K++ A M G + Y L C
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 432 NGRWQDAMLVVEKIKSLR---------------HSKPLEITFTGLIISSMDGGHIDDCIS 476
G+ + A + E++ + +P +T+ L+ +++
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660
Query: 477 IFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 535
+ M + CEPN +A++ + +A+E+ E +S G P
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTE-----------MSEHGFP--A 707
Query: 536 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 595
YTYSS+++ + + V M + C + + ++ + GK
Sbjct: 708 TLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 767
Query: 596 DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM---AYAPFHITER 643
+ E G P+ + +T M+ + E + L+ M AP ++T R
Sbjct: 768 QMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 22/255 (8%)
Query: 316 VYNAVLNACVPSHQWKGVFWV----FKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
V+ LN V H G F + +L+ +PS +TY ++ L++ + D
Sbjct: 198 VFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLI 257
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
R+M+ + + T + + + GK EA+ V E V Y +L LC
Sbjct: 258 HREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLV---ETENFVPDTVFYTKLISGLCE 314
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ-HMKDHCEPNIG 490
+++AM + ++++ P +T++ L+ ++ + C + M + C P+
Sbjct: 315 ASLFEEAMDFLNRMRA-TSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPK 373
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTRA-NSSGYTF-------LSGDGAPLKPD-----E 537
N+++ Y + S A +L ++ + + GY + GD L D E
Sbjct: 374 IFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAE 433
Query: 538 YTYSSMLEASATAHQ 552
YS ML A ++
Sbjct: 434 KAYSEMLAAGVVLNK 448
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 31/265 (11%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-------------VYTKLLAILGKAG 242
L+ G G +A + + + G KD D+ F Y LL K+
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653
Query: 243 RPHEALRIFNLM-LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301
R EA ++ + M +E C P+ Y ++ L +VG L E ++ +K
Sbjct: 654 RVEEARKLLDAMSMEGCE--PNQIVYDALIDGLCKVGKLDE------------AQEVKTE 699
Query: 302 HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ 361
++ P L Y+++++ + V ++ ++ P+ Y ++ + +
Sbjct: 700 MSEHGFPA---TLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Query: 362 SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 421
GK D ++ + M + G +TY ++ F GKI + + M +GV
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 422 YYELACCLCNNGRWQDAMLVVEKIK 446
Y L C NG A ++E++K
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMK 841
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 133/320 (41%), Gaps = 15/320 (4%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+PD V + +++ ++ + +++ G +P TYG + + + G+ DL
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 226
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
KM K + Y ++ + + +++A+ M+ +G+ Y L CLC
Sbjct: 227 LLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLC 286
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
N GRW DA ++ + R P +TF LI + G + + +F M + +PNI
Sbjct: 287 NYGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 345
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T N+++ + +D +A+++F + PD TY++++
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDC-------------LPDVVTYNTLINGFCK 392
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
A + +++ M+ G + + L+ +A C + F ++ G P+ +
Sbjct: 393 AKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMT 452
Query: 610 FTEMLIQAIVQSNYEKAVAL 629
+ +L EKA+ +
Sbjct: 453 YNTLLDGLCKNGKLEKAMVV 472
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 143/342 (41%), Gaps = 31/342 (9%)
Query: 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA 265
+R L+ + +K F Y+ L++ L GR +A R+ + MLE + P++
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER-KINPNVV 311
Query: 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325
++S+ + G L E KL + M Q+ ++P++V YN+++N
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRS---------------IDPNIVTYNSLINGFC 356
Query: 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385
+ +F + P TY + ++ K E FR M++ G +
Sbjct: 357 MHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416
Query: 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 445
TY L+ F++ + A + M GV Y L LC NG+ + AM+V E +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 446 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDM 504
+ + +P T+ + G ++D +F + +P++ N M+ + + +
Sbjct: 477 QKSKM-EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535
Query: 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 546
+A LF + + DG PL PD TY++++ A
Sbjct: 536 KEEAYTLFIK-----------MKEDG-PL-PDSGTYNTLIRA 564
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/420 (21%), Positives = 153/420 (36%), Gaps = 69/420 (16%)
Query: 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK---- 296
R EA+ + + M+E PD + ++ L Q E V L+ERM K +
Sbjct: 148 GNRISEAVALVDQMVE-MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 206
Query: 297 ---RIKNMHRKNWDPVL-------------EPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340
+ N K +P L E D+V+Y+ V+++ +F ++
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266
Query: 341 RKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKI 400
G++P TY + + G++ M + +T+ L+ AF +EGK+
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326
Query: 401 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA----MLVVEK------------ 444
EA M QR + Y L C + R +A L+V K
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386
Query: 445 IKSLRHSKPL------------------EITFTGLIISSMDGGHIDDCISIFQHM-KDHC 485
I +K + +T+T LI D+ +F+ M D
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 486 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 545
PNI T N +L +N KA +FE ++ ++PD YTY+ M E
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK-------------MEPDIYTYNIMSE 493
Query: 546 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 605
A + E ++ ++L G + D + ++ + G F + E G +P
Sbjct: 494 GMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLP 553
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 109/263 (41%), Gaps = 25/263 (9%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTL--------------- 274
Y L+ R EA +IF LM+ +DC PD+ Y+++
Sbjct: 348 YNSLINGFCMHDRLDEAQQIFTLMVSKDC--LPDVVTYNTLINGFCKAKKVVDGMELFRD 405
Query: 275 ----GQVGLLKELVKLIERMRQKP-SKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329
G VG LI Q + + ++ + P+++ YN +L+ + +
Sbjct: 406 MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 330 WKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389
+ VF+ L+KS ++P TY + E M ++GK + + F ++ G + Y
Sbjct: 466 LEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNT 525
Query: 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 449
++ F ++G EA M++ G + + Y L +G + ++++++S R
Sbjct: 526 MISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCR 585
Query: 450 HSKPLEITFTGLIISSMDGGHID 472
+ + + GL+ + G +D
Sbjct: 586 FAG--DASTYGLVTDMLHDGRLD 606
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/425 (18%), Positives = 163/425 (38%), Gaps = 69/425 (16%)
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
+F ++ KS PS + + + + K+DLV F KM G + TY +++
Sbjct: 52 LFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLC 111
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
+++ A+A + M + G + L C+ R +A+ +V+++ + + +P
Sbjct: 112 RRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY-QPDT 170
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAML------------------ 496
+TFT L+ + +++ + M C+P++ T A++
Sbjct: 171 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230
Query: 497 ----KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ 552
K+ + ++S + + + + F D ++PD +TYSS++ +
Sbjct: 231 MEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 290
Query: 553 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTE 612
W + M + L+ ++ GK L+EA ++ F E
Sbjct: 291 WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK----------LIEAEKL-----FDE 335
Query: 613 MLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCN 672
M IQ + N +LIN DR+ D+ +++ + + +
Sbjct: 336 M-IQRSIDPNIVTYNSLINGFCM-----------------HDRL--DEAQQIFTLMVSKD 375
Query: 673 AASSEITVSNLSRALHALCRSEKE-------RDLSSSAHFGSQAIDISPLHGIHEAFDVK 725
+T + L ++ C+++K RD+S G+ + +HG +A D
Sbjct: 376 CLPDVVTYNTL---INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCD 432
Query: 726 ETENV 730
+ V
Sbjct: 433 NAQMV 437
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 180/424 (42%), Gaps = 52/424 (12%)
Query: 223 RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG---QVGL 279
R ++SR TKL+ +L + GRPHEA +F + E + P + +Y ++ + Q G
Sbjct: 43 RTVRSR---TKLMNVLIERGRPHEAQTVFKTLAETGH-RPSLISYTTLLAAMTVQKQYGS 98
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
+ +V +E+ K D + +NAV+NA S + +
Sbjct: 99 ISSIVSEVEQSGTK------------------LDSIFFNAVINAFSESGNMEDAVQALLK 140
Query: 340 LRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA-IGA--LTYKVLVRAFWE 396
+++ GL P+ +TY ++ +GK + E M + G +G T+ VLV+A+ +
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200
Query: 397 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA-MLVVEKIKSLRHSKPLE 455
+ K+ EA V+ ME+ GV Y +A C G A VVEK+ +KP
Sbjct: 201 KKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNG 260
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNI----GTVNAMLKVYSRNDMFSKAKE 510
T ++ G + D + + MK+ E N+ +N ++V R D +
Sbjct: 261 RTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDR-DGIDEVLT 319
Query: 511 LFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 570
L +E +K D TYS+++ A ++A E V+K M +G +
Sbjct: 320 LMKECN----------------VKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKP 363
Query: 571 DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALI 630
D ++ L RA + E ++L+ P+ + FT ++ + + A+ +
Sbjct: 364 DAHAYSILAKGYVRAKEPKKAEELLETLIVESR-PNVVIFTTVISGWCSNGSMDDAMRVF 422
Query: 631 NAMA 634
N M
Sbjct: 423 NKMC 426
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 28/289 (9%)
Query: 181 MNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240
M + GL T L+KG G G ++ +LD + + + + L+ K
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200
Query: 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG-LLKELVKLIERM----RQKPS 295
+ EA + M E+C + PD Y+++A Q G ++ +++E+M + KP+
Sbjct: 201 KKKVEEAWEVVKKM-EECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPN 259
Query: 296 KRIKNMH-----------------RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFK 338
R + R+ + +E +LVV+N+++N V G+ V
Sbjct: 260 GRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLT 319
Query: 339 QLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW--E 396
+++ +K TY M +G + + F++M K+G A Y +L + + +
Sbjct: 320 LMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAK 379
Query: 397 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 445
E K E + +E R V ++ + C+NG DAM V K+
Sbjct: 380 EPKKAEELLETLIVESRPNV---VIFTTVISGWCSNGSMDDAMRVFNKM 425
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 142/355 (40%), Gaps = 67/355 (18%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
PD + ++ L G + E ++L++RM + K P L+ NA++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PTLITLNALV 184
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
N + + + ++ ++G +P+ TYG ++VM +SG+ L E RKM +
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD-AML 440
+ A+ Y +++ ++G ++ A ME +G +Y L C GRW D A L
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304
Query: 441 VVEKIKSLRHSKPLEITFTGLI-------------------------------ISSMDGG 469
+ + IK R P + F+ LI S +DG
Sbjct: 305 LRDMIK--RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 470 HIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 524
++ + HM D C PNI T N ++ Y + ++ ELF + +
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS-------- 414
Query: 525 FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 579
L G + D TY+++++ + E + +++ M + D + LL
Sbjct: 415 -LRG----VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILL 464
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/418 (22%), Positives = 167/418 (39%), Gaps = 55/418 (13%)
Query: 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230
TA + +R M + + + ++ GL GS A ++ + + K D+ +
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI---II 284
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ AGR + ++ M++ + PD+ A+ ++ + G L+E +L + M
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKR-KITPDVVAFSALIDCFVKEGKLREAEELHKEM 343
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
Q+ + PD V Y ++++ +Q + + G P+
Sbjct: 344 IQRG---------------ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIR 388
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
T+ + + ++ D E FRKM+ G +TY L++ F E GK+ A + M
Sbjct: 389 TFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM-DGG 469
R V Y L LC+NG + A+ + EKI+ + L+I +II M +
Sbjct: 449 VSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE--KSKMELDIGIYNIIIHGMCNAS 506
Query: 470 HIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528
+DD +F + +P++ T N M+ + S+A LF + S
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHS------- 559
Query: 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586
P+ TY+ ++ AH E D TK A L+ E R G
Sbjct: 560 ------PNGCTYNILIR----AHLGEG---------------DATKSAKLIEEIKRCG 592
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 138/335 (41%), Gaps = 27/335 (8%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
P L+ ++ + + + Q+ V + KQ+ G+ + T + + + K L
Sbjct: 70 PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
K+ K G +T+ L+ EG+++EA+ V M + G T L LC
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK------DHC 485
NG+ DA+L+++++ +P E+T+ ++ G + + + M+ D
Sbjct: 190 NGKVSDAVLLIDRMVETGF-QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAV 248
Query: 486 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL------SG---DGAPL--- 533
+ +I ++ + K S ++ F+ E+ + +A+ YT L +G DGA L
Sbjct: 249 KYSI-IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRD 307
Query: 534 ------KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
PD +S++++ + E ++K M G D + L+ + +
Sbjct: 308 MIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQ 367
Query: 588 CHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 622
H D ++ G P+ F +LI ++N
Sbjct: 368 LDKANHMLDLMVSKGCGPNIRTFN-ILINGYCKAN 401
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 17/210 (8%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ + G+ A +F M+ + PDI +Y + L G ++ +++ E++
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSR-RVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
+ +E D+ +YN +++ + + + +F L G+KP
Sbjct: 484 EKSK---------------MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVK 528
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
TY + + + + G FRKM + G + TY +L+RA EG ++ + +
Sbjct: 529 TYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAML 440
++ G AS ++ + ++GR + + L
Sbjct: 589 KRCGFSVDAST-VKMVVDMLSDGRLKKSFL 617
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 140/347 (40%), Gaps = 25/347 (7%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+PD V + +++ ++ + +++ G +P TYG + + + G+ DL
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
KM K + Y ++ + +++A ME +G+ Y L CLC
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLC 296
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM--KDHCEPN 488
N GRW DA ++ + ++ P + F LI + + G + + ++ M HC P+
Sbjct: 297 NYGRWSDASRLLSDMLE-KNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD 355
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTR----ANSSGYTFL--------SGDGAPL--- 533
+ N ++K + + + E+F E ++ N+ YT L D A +
Sbjct: 356 VVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 415
Query: 534 -------KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586
PD TY+ +L+ E V++ M +LD + ++ +AG
Sbjct: 416 QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAG 475
Query: 587 KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633
K F SL G P+ + +T M+ + E+A AL M
Sbjct: 476 KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEM 522
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 17/295 (5%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
F Y L++ L GR +A R+ + MLE N+ PD+ ++++ + G L E KL +
Sbjct: 286 FTYNPLISCLCNYGRWSDASRLLSDMLEK-NINPDLVFFNALIDAFVKEGKLVEAEKLYD 344
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
M +K+ H PD+V YN ++ + + VF+++ + GL +
Sbjct: 345 EM-------VKSKH-------CFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390
Query: 349 AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVR 408
TY + Q+ D F++M G +TY +L+ G + A+
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFE 450
Query: 409 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 468
M++R + Y + LC G+ +D + + SL+ KP +T+T ++
Sbjct: 451 YMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSL-SLKGVKPNVVTYTTMMSGFCRK 509
Query: 469 GHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSG 522
G ++ ++F MK D PN GT N +++ R+ + + EL +E +G
Sbjct: 510 GLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAG 564
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 97/428 (22%), Positives = 165/428 (38%), Gaps = 39/428 (9%)
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL R EA+ + + M+E PD + ++ L Q E V L+ERM K
Sbjct: 151 LLNGFCHGNRISEAVALVDQMVE-MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK 209
Query: 294 PSK-------RIKNMHRKNWDPVL-------------EPDLVVYNAVLNACVPSHQWKGV 333
+ + N K +P L E D+V+YN +++
Sbjct: 210 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 269
Query: 334 FWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRA 393
F +F ++ G+KP TY + + G++ M + + + L+ A
Sbjct: 270 FDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDA 329
Query: 394 FWEEGKINEAVAAVRNM-EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 452
F +EGK+ EA M + + Y L C R ++ M V ++ S R
Sbjct: 330 FVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREM-SQRGLV 388
Query: 453 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 511
+T+T LI D+ +F+ M D P+I T N +L N A +
Sbjct: 389 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVV 448
Query: 512 FEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 571
FE + + +K D TY++M+EA A + E ++ ++L G + +
Sbjct: 449 FEYMQKRD-------------MKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPN 495
Query: 572 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVA-LI 630
+ ++ R G + F + E G +P+ + LI+A ++ E A A LI
Sbjct: 496 VVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNT-LIRARLRDGDEAASAELI 554
Query: 631 NAMAYAPF 638
M F
Sbjct: 555 KEMRSCGF 562
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 105/250 (42%), Gaps = 23/250 (9%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ L + G W A +L + DL + L+ K G+ EA ++++ M+
Sbjct: 291 LISCLCNYGRWSDASRLLSDMLEKNINPDL---VFFNALIDAFVKEGKLVEAEKLYDEMV 347
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK--------------------PS 295
+ + +PD+ AY+++ + ++E +++ M Q+
Sbjct: 348 KSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDC 407
Query: 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
+ + ++ + PD++ YN +L+ + + VF+ ++K +K TY
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTM 467
Query: 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415
+E + ++GK + + F ++ G +TY ++ F +G EA A M++ G
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527
Query: 416 VGTASVYYEL 425
+ + Y L
Sbjct: 528 LPNSGTYNTL 537
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/404 (17%), Positives = 143/404 (35%), Gaps = 28/404 (6%)
Query: 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFF 372
+L Y+ +N Q + ++ K G PS T + +
Sbjct: 109 NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 168
Query: 373 RKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432
+M + G +T+ LV ++ K +EAVA V M +G Y + LC
Sbjct: 169 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228
Query: 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGT 491
G A+ ++ K++ + + I + +I H+DD +F M+ +P++ T
Sbjct: 229 GEPDLALNLLNKMEKGKIEADVVI-YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFT 287
Query: 492 VNAMLKVYSRNDMFSKAKELFEETTRAN-SSGYTFLSG-------DGAPLK--------- 534
N ++ +S A L + N + F + +G ++
Sbjct: 288 YNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMV 347
Query: 535 ------PDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
PD Y+++++ + E V++ M+ G + + L+ +A C
Sbjct: 348 KSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDC 407
Query: 589 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 648
+ F ++ G P + + +L N E A+ + M + +T +
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTM 467
Query: 649 FESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCR 692
E+ K+E + C+ + + V + + CR
Sbjct: 468 IEA---LCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
+F + KS PS + + + + K+DLV +M G + TY + + F
Sbjct: 62 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFC 121
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
+++ A+A + M + G + L C+ R +A+ +V+++ + + +P
Sbjct: 122 RRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY-QPDT 180
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAML 496
+TFT L+ + +++ + M C+P++ T A++
Sbjct: 181 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVI 222
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 163/385 (42%), Gaps = 34/385 (8%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L++G G+ A+++ D ++ K L + Y L+ K + + ++ M
Sbjct: 211 LIRGFCFAGNIDVALTLFD---KMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA 267
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
L P++ +Y+ V L + G +KE+ S + M+R+ + D V
Sbjct: 268 LK-GLEPNLISYNVVINGLCREGRMKEV-----------SFVLTEMNRRGYSL----DEV 311
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375
YN ++ + + ++ + GL PS TY + M ++G + EF +M
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Query: 376 AKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435
G TY LV F ++G +NEA +R M G + Y L C G+
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKM 431
Query: 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNA 494
+DA+ V+E +K + P ++++ ++ +D+ + + + M + +P+ T ++
Sbjct: 432 EDAIAVLEDMKE-KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Query: 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 554
+++ + +A +L+EE R G P PDE+TY++++ A E
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRV-----------GLP--PDEFTYTALINAYCMEGDLE 537
Query: 555 YFEYVYKGMALSGCQLDQTKHAWLL 579
++ M G D ++ L+
Sbjct: 538 KALQLHNEMVEKGVLPDVVTYSVLI 562
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/442 (20%), Positives = 173/442 (39%), Gaps = 32/442 (7%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
F Y L+ AG AL +F+ M E P++ Y+++ ++ + + KL+
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLR 264
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
M K LEP+L+ YN V+N + K V +V ++ + G
Sbjct: 265 SMALKG---------------LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309
Query: 349 AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVR 408
TY ++ + G + +M + G +TY L+ + + G +N A+ +
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369
Query: 409 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 468
M RG+ Y L G +A V+ ++ S P +T+ LI
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFS-PSVVTYNALINGHCVT 428
Query: 469 GHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 527
G ++D I++ + MK+ P++ + + +L + R+ +A + E
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG-------- 480
Query: 528 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
+KPD TYSS+++ + + +Y+ M G D+ + L+ G
Sbjct: 481 -----IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535
Query: 588 CHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTE 647
+ ++E G +P + ++ ++ QS +A L+ + Y ++ +
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHT 595
Query: 648 LFESNEDRISRDKLEKLLNALC 669
L E N I + L+ C
Sbjct: 596 LIE-NCSNIEFKSVVSLIKGFC 616
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 163/411 (39%), Gaps = 56/411 (13%)
Query: 196 LLKGLGDKGSWRQAMSVLDW--VYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL 253
L+ + G+ +AM LD V GL + YT L+ + G +EA R+
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGL-----CPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 254 MLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313
M D P + Y+++ G +++ + ++E M++K L PD
Sbjct: 406 M-NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG---------------LSPD 449
Query: 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFR 373
+V Y+ VL+ S+ V +++ + G+KP TY ++ + + + +
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509
Query: 374 KMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 433
+M + G TY L+ A+ EG + +A+ M ++GV+ Y L L
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569
Query: 434 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVN 493
R ++A ++ K+ S P ++T+ LI ++C +I +V
Sbjct: 570 RTREAKRLLLKL-FYEESVPSDVTYHTLI---------ENCSNI----------EFKSVV 609
Query: 494 AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQW 553
+++K + M ++A ++FE N KPD Y+ M+ A
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNH-------------KPDGTAYNIMIHGHCRAGDI 656
Query: 554 EYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI 604
+YK M SG L L+ + GK + L +L + E+
Sbjct: 657 RKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL 707
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/389 (21%), Positives = 153/389 (39%), Gaps = 74/389 (19%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFW-VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
P ++ YNAVL+A + S + VFK++ +S + P+ TY + + +G D+
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
F KM G +TY L+ + + KI++ +R+M +G+ Y + LC
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLC 286
Query: 431 NNGRWQDAMLVVEKI---------------------------------KSLRHS-KPLEI 456
GR ++ V+ ++ + LRH P I
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346
Query: 457 TFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514
T+T LI S G+++ + M+ C PN T ++ +S+ ++A + E
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC-PNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 515 TTRANSSGYT--------FLSGDGAP-----------------LKPDEYTYSSMLEASAT 549
N +G++ ++G L PD +YS++L
Sbjct: 406 ---MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLL---VEASRAGK-CHLLEHAFDSLLEAGEIP 605
++ + V + M G + D ++ L+ E R + C L ++ +L G P
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL----YEEMLRVGLPP 518
Query: 606 HPLFFTEMLIQAIVQSNYEKAVALINAMA 634
+T ++ ++ + EKA+ L N M
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMV 547
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 109/273 (39%), Gaps = 16/273 (5%)
Query: 148 EKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207
EK + + L+ E+ T + M + GL E L+ +G
Sbjct: 478 EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLE 537
Query: 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIF-NLMLEDCNLYPDIAA 266
+A+ + + + +K L Y+ L+ L K R EA R+ L E+ P
Sbjct: 538 KALQLHNE---MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES--VPSDVT 592
Query: 267 YHSVAVTLGQVGLLKELVKLIER-----MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
YH++ + K +V LI+ M + + ++M KN +PD YN ++
Sbjct: 593 YHTLIENCSNIEF-KSVVSLIKGFCMKGMMTEADQVFESMLGKNH----KPDGTAYNIMI 647
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
+ + + + ++K++ KSG T ++ + + GK + ++ + +S E
Sbjct: 648 HGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL 707
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414
A KVLV EG ++ + + M + G
Sbjct: 708 SEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 140/337 (41%), Gaps = 19/337 (5%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
P +V +N +L+A V ++ V + K++ G++ T+ + + + L
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
KM K G +T LV F ++++AV+ V M + G Y + LC
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIG 490
R DA ++I+ + +P +T+T L+ + D + M K PN+
Sbjct: 203 TKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550
T +A+L + +N +AKELFEE R + + PD TYSS++
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMS-------------IDPDIVTYSSLINGLCLH 308
Query: 551 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 610
+ + ++ M GC D + L+ +A + F + + G + + + +
Sbjct: 309 DRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTY 368
Query: 611 TEMLIQAIVQS-NYEKAVALINAMAYAPFHITERQWT 646
LIQ Q+ + +KA + M + F I+ WT
Sbjct: 369 NT-LIQGFFQAGDVDKAQEFFSQMDF--FGISPDIWT 402
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 130/348 (37%), Gaps = 40/348 (11%)
Query: 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302
R +A+ + + M+E PDI AY+++ +L + + + + + +K
Sbjct: 170 RVSDAVSLVDKMVE-IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG-------- 220
Query: 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS 362
+ P++V Y A++N S +W + + K + P+ TY ++ +++
Sbjct: 221 -------IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKN 273
Query: 363 GKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 422
GK E F +M + +TY L+ +I+EA M +G + Y
Sbjct: 274 GKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSY 333
Query: 423 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 482
L C R +D M + ++ S R +T+ LI G +D F M
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392
Query: 483 DH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE----------------------TTRAN 519
P+I T N +L N KA +FE+ T +
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVE 452
Query: 520 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567
+ F S LKPD TY++M+ T E +Y M G
Sbjct: 453 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 124/305 (40%), Gaps = 15/305 (4%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+PD+V YNA++++ + + F FK++ + G++P+ TY + + S ++
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
M K +TY L+ AF + GK+ EA M + + Y L LC
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 306
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNI 489
+ R +A + + + S + +++ LI ++D + +F+ M N
Sbjct: 307 LHDRIDEANQMFDLMVS-KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNT 365
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T N +++ + + KA+E F + D + PD +TY+ +L
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQM-------------DFFGISPDIWTYNILLGGLCD 412
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ E +++ M LD + ++ + GK F SL G P +
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472
Query: 610 FTEML 614
+T M+
Sbjct: 473 YTTMM 477
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 48/107 (44%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
+ PD+ YN +L + + + +F+ ++K + TY + M ++GK +
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416
F ++ G +TY ++ +G ++E A M+Q G++
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLM 502
Score = 37.0 bits (84), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 47/231 (20%)
Query: 108 LKRENLRELKEMFEKDLNWVLDDDVQLGS------------DYFAKNVEWHPEKRWRSEA 155
+K + E KE+FE+ + +D D+ S D + + K ++
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADV 330
Query: 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGL---GDKGSWRQAMSV 212
+ L++ + + K R M+Q GL+ L++G GD ++ S
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390
Query: 213 LD--------WVY-----GLKDKRDLKSRFV----------------YTKLLAILGKAGR 243
+D W Y GL D +L+ V YT ++ + K G+
Sbjct: 391 MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK 450
Query: 244 PHEALRIF-NLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
EA +F +L L+ L PDI Y ++ L GLL E+ L +M+Q+
Sbjct: 451 VEEAWSLFCSLSLK--GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/354 (19%), Positives = 144/354 (40%), Gaps = 30/354 (8%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
PDI +S+ + + V L+++M + K PD V + ++
Sbjct: 146 PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYK---------------PDTVTFTTLI 190
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
+ ++ + ++ + G +P TYG + + + G DL KM +
Sbjct: 191 HGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIE 250
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 441
+ Y ++ + + ++A+ ME +GV Y L CLCN GRW DA +
Sbjct: 251 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRL 310
Query: 442 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYS 500
+ + R P +TF+ LI + + G + +++ M K +PNI T ++++ +
Sbjct: 311 LSDMIE-RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFC 369
Query: 501 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 560
D +AK++ E R + P+ TY++++ A + + ++
Sbjct: 370 MLDRLGEAKQMLELMIRKDC-------------LPNVVTYNTLINGFCKAKRVDKGMELF 416
Query: 561 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
+ M+ G + + L+ +A C + F ++ G P+ L + +L
Sbjct: 417 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 470
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/360 (20%), Positives = 143/360 (39%), Gaps = 69/360 (19%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
++ GL +G A+++L+ + K + ++ +Y+ ++ L K +AL +F M
Sbjct: 224 VVNGLCKRGDTDLALNLLNKMEAAKIEANV---VIYSTVIDSLCKYRHEDDALNLFTEM- 279
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
E+ + P++ Y S+ L G + +L+ M + RK + P+LV
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM----------IERK-----INPNLV 324
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375
++A+++A V + +++++ K + P+ TY + + + M
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 376 AKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435
+ +TY L+ F + ++++ + R M QRG+VG
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNT---------------- 428
Query: 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNA 494
+T+T LI D+ +F+ M PNI T N
Sbjct: 429 --------------------VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 468
Query: 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 554
+L +N +KA +FE R+ ++PD YTY+ M+E A +W+
Sbjct: 469 LLDGLCKNGKLAKAMVVFEYLQRST-------------MEPDIYTYNIMIEGMCKAGKWK 515
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 80/424 (18%), Positives = 152/424 (35%), Gaps = 62/424 (14%)
Query: 332 GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391
G+F V Q R PS + + + + K+DLV F KM G + TY +L+
Sbjct: 64 GLFGVMAQSRPF---PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILI 120
Query: 392 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 451
F +++ A+A + M + G L C+ R DA+ +V+++ + +
Sbjct: 121 NCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGY- 179
Query: 452 KPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGT----VNAMLKVYSRNDMFS 506
KP +TFT LI + +++ M + C+P++ T VN + K + +
Sbjct: 180 KPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALN 239
Query: 507 KAKELFEETTRANSSGYT------------------FLSGDGAPLKPDEYTYSSMLEASA 548
++ AN Y+ F + ++P+ TYSS++
Sbjct: 240 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 299
Query: 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608
+W D ++ ++E D+ ++ G++
Sbjct: 300 NYGRWS----------------DASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAE 343
Query: 609 FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDK--LEKLLN 666
E +I+ + N +LIN DR+ K LE ++
Sbjct: 344 KLYEEMIKRSIDPNIFTYSSLINGFCML-----------------DRLGEAKQMLELMIR 386
Query: 667 ALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKE 726
C N + ++ +A E R++S G+ + +HG +A D
Sbjct: 387 KDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 446
Query: 727 TENV 730
+ V
Sbjct: 447 AQMV 450
Score = 40.0 bits (92), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 23/165 (13%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTL------------- 274
F Y+ L+ R EA ++ LM+ +DC P++ Y+++
Sbjct: 359 FTYSSLINGFCMLDRLGEAKQMLELMIRKDC--LPNVVTYNTLINGFCKAKRVDKGMELF 416
Query: 275 ------GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV-LEPDLVVYNAVLNACVPS 327
G VG LI Q M K V + P+++ YN +L+ +
Sbjct: 417 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 476
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFF 372
+ VF+ L++S ++P TY + +E M ++GK+ + +F
Sbjct: 477 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYF 521
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/388 (19%), Positives = 162/388 (41%), Gaps = 68/388 (17%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
+++ LG++ +A+ ++ + +++ + + + +++ LG+ G+ A RIF
Sbjct: 202 IIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLA-SAMISTLGRYGKVTIAKRIFETAF 260
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ A+ ++ G+ GL +E + + M++ L P+LV
Sbjct: 261 AG-GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG---------------LRPNLV 304
Query: 316 VYNAVLNACVPSH-QWKGVFWVFKQLRKSGLKPSAAT----------------------- 351
YNAV++AC ++K V F +++++G++P T
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 352 ------------YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399
Y ++ + + G+ DL E +M ++Y ++ F + G+
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424
Query: 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 459
+EA+ M G+ Y L GR ++A+ ++ ++ S+ K + +T+
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDV-VTYN 483
Query: 460 GLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518
L+ G D+ +F MK +H PN+ T + ++ YS+ ++ +A E+F E A
Sbjct: 484 ALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Query: 519 NSSGYTFLSGDGAPLKPDEYTYSSMLEA 546
L+ D YS++++A
Sbjct: 544 G-------------LRADVVLYSALIDA 558
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 20/287 (6%)
Query: 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235
KF M ++G+ LL G W A ++ D + + ++D+ F Y LL
Sbjct: 325 KFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDV---FSYNTLL 381
Query: 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS 295
+ K G+ A I M + P++ +Y +V + G E + L MR
Sbjct: 382 DAICKGGQMDLAFEILAQMPVK-RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG- 439
Query: 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
+ D V YN +L+ + + + +++ G+K TY
Sbjct: 440 --------------IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNAL 485
Query: 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415
+ + GKYD V + F +M + LTY L+ + + G EA+ R + G+
Sbjct: 486 LGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGL 545
Query: 416 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI 462
+Y L LC NG A+ +++++ S P +T+ +I
Sbjct: 546 RADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGIS-PNVVTYNSII 591
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/433 (23%), Positives = 176/433 (40%), Gaps = 95/433 (21%)
Query: 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD 263
G R A +L + L DK + + +Y ++ L + R +A ++ M + N+YPD
Sbjct: 249 GRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAM-DKINVYPD 307
Query: 264 IAAYHSVAVTLGQVGL-LKELVKLIERMRQKPSKRIKN---------------------- 300
+ TL + G KE+ ++ E+M +K K ++
Sbjct: 308 NVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQ 367
Query: 301 --MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV 358
M +K + + +VYN +++A S+ + V +F ++R GLKPSAATY + M+
Sbjct: 368 TEMEKKG----IRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDA 423
Query: 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVA-AVRNMEQRGVVG 417
+ + D+V R+M G +Y L+ A+ K+++ A A M++ G+
Sbjct: 424 YARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKP 483
Query: 418 TASVYYELACC----------------LCNNG----------------RWQDA------- 438
++ Y L +C G R D
Sbjct: 484 SSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIW 543
Query: 439 -MLVVEKIKSLRHSKPLEITFTGLIIS-SMDGGHID--DCISIFQHMKDHCEPNIGTVNA 494
+++ EKIK R IT+ L+ + G +I+ D +S F M +P++ T N
Sbjct: 544 KLMLREKIKGTR------ITYNTLLDGFAKQGLYIEARDVVSEFSKM--GLQPSVMTYNM 595
Query: 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 554
++ Y+R +K +L +E N LKPD TYS+M+ A ++
Sbjct: 596 LMNAYARGGQDAKLPQLLKEMAALN-------------LKPDSITYSTMIYAFVRVRDFK 642
Query: 555 YFEYVYKGMALSG 567
+ +K M SG
Sbjct: 643 RAFFYHKMMVKSG 655
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/382 (18%), Positives = 152/382 (39%), Gaps = 18/382 (4%)
Query: 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKY-DLVHEF 371
D+ +YNA ++ S ++ + V++ + K + P T + + + ++G+ V E
Sbjct: 272 DVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEI 331
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
F KM++ G + LV++F +EG EA+ ME++G+ VY L
Sbjct: 332 FEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNK 391
Query: 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIG 490
+ ++ + +++ + KP T+ L+ + D ++ + M+D EPN+
Sbjct: 392 SNHIEEVEGLFTEMRD-KGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550
+ ++ Y R S + + FL LKP ++Y++++ A + +
Sbjct: 451 SYTCLISAYGRTKKMS------------DMAADAFLRMKKVGLKPSSHSYTALIHAYSVS 498
Query: 551 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 610
E ++ M G + + +L R+G L + +L + +
Sbjct: 499 GWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITY 558
Query: 611 TEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCN 670
+L Q Y +A +++ + + + L + KL +LL +
Sbjct: 559 NTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAA 618
Query: 671 CNAASSEITVSNLSRALHALCR 692
N IT S + ++A R
Sbjct: 619 LNLKPDSITYSTM---IYAFVR 637
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 22/210 (10%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL---GQVGLLKELVKLI 287
YT L+ +G +A F M ++ + P + Y SV G G L E+ KL+
Sbjct: 488 YTALIHAYSVSGWHEKAYASFEEMCKE-GIKPSVETYTSVLDAFRRSGDTGKLMEIWKLM 546
Query: 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
R + K ++ + YN +L+ + V + K GL+P
Sbjct: 547 LREKIKGTR------------------ITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQP 588
Query: 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407
S TY + M + G+ + + ++MA ++TY ++ AF A
Sbjct: 589 SVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYH 648
Query: 408 RNMEQRGVVGTASVYYELACCLCNNGRWQD 437
+ M + G V Y +L L + + ++
Sbjct: 649 KMMVKSGQVPDPRSYEKLRAILEDKAKTKN 678
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/357 (20%), Positives = 148/357 (41%), Gaps = 39/357 (10%)
Query: 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291
+ L+ + R +A+ + + M E+ PD+ Y+++ ++GL+ + V+L +RM
Sbjct: 143 SSLINGFCQGNRVFDAIDLVSKM-EEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRME 201
Query: 292 QK-----------------PSKRIKNMHRKNWDPVLE---PDLVVYNAVLNACVPSHQWK 331
+ S R + R D V+ P+++ + AV++ V ++
Sbjct: 202 RDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFS 261
Query: 332 GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391
+++++ + + P TY + + G+ D + M G +TY L+
Sbjct: 262 EAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLI 321
Query: 392 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 451
F + +++E R M QRG+VG Y + GR A + ++ S +
Sbjct: 322 NGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNI 381
Query: 452 KPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKE 510
+ I GL ++ ++ + +F++M K E +I T N ++ + A +
Sbjct: 382 RTYSILLYGLCMN----WRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWD 437
Query: 511 LFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567
LF LS G LKPD +Y++M+ QW+ + +Y+ M G
Sbjct: 438 LFRS-----------LSCKG--LKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 130/322 (40%), Gaps = 18/322 (5%)
Query: 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFF 372
DL YN V+N ++ V ++ K G +P T + Q + +
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162
Query: 373 RKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432
KM + G + Y ++ + G +N+AV ME+ GV A Y L LC +
Sbjct: 163 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS 222
Query: 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC-EPNIGT 491
GRW DA ++ + +R P ITFT +I + G + + +++ M C +P++ T
Sbjct: 223 GRWSDAARLMRDM-VMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFT 281
Query: 492 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH 551
N+++ + +AK++ + PD TY++++ +
Sbjct: 282 YNSLINGLCMHGRVDEAKQMLDLMVTKGC-------------LPDVVTYNTLINGFCKSK 328
Query: 552 QWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT 611
+ + +++ MA G D + ++ +AG+ + F + P+ ++
Sbjct: 329 RVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYS 385
Query: 612 EMLIQAIVQSNYEKAVALINAM 633
+L + EKA+ L M
Sbjct: 386 ILLYGLCMNWRVEKALVLFENM 407
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/422 (19%), Positives = 168/422 (39%), Gaps = 37/422 (8%)
Query: 213 LDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272
+D + R L S ++K+L+ + K+ + +F+ M E C + D+ +Y+ V
Sbjct: 54 IDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHM-EVCGIGHDLYSYNIVIN 112
Query: 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKG 332
L + + ++ +M + EPD+V ++++N ++
Sbjct: 113 CLCRCSRFVIALSVVGKMMKFG---------------YEPDVVTVSSLINGFCQGNRVFD 157
Query: 333 VFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392
+ ++ + G +P Y ++ + G + E F +M + G A+TY LV
Sbjct: 158 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVA 217
Query: 393 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 452
G+ ++A +R+M R +V + + G++ +AM + E++ + R
Sbjct: 218 GLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM-TRRCVD 276
Query: 453 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 511
P T+ LI G +D+ + M C P++ T N ++ + ++ + +L
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 512 FEETTRANSSG-----YTFLSG---DGAP-----------LKPDEYTYSSMLEASATAHQ 552
F E + G T + G G P +P+ TYS +L +
Sbjct: 337 FREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWR 396
Query: 553 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTE 612
E +++ M S +LD T + ++ + G F SL G P + +T
Sbjct: 397 VEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTT 456
Query: 613 ML 614
M+
Sbjct: 457 MI 458
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 22/221 (9%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ GL G +A +LD + K L Y L+ K+ R E ++F M
Sbjct: 285 LINGLCMHGRVDEAKQMLDL---MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 341
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ L D Y+++ Q G ++ RM +P+ R
Sbjct: 342 QR-GLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIR------------------ 382
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375
Y+ +L + + + +F+ ++KS ++ TY + + M + G + + FR +
Sbjct: 383 TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 442
Query: 376 AKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416
+ G ++Y ++ F + + +++ R M++ G++
Sbjct: 443 SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLL 483
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 126/313 (40%), Gaps = 24/313 (7%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
++ + +Y+ +++ K VFK+L++ G P+ TYG + + + GK
Sbjct: 445 IDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKAL 504
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
E R M + G TY +++ F + A A +M + G+ +Y +
Sbjct: 505 EVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAF 564
Query: 430 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPN 488
C G A+ V++++ LRH +P TF +I G + + +F M+ C P
Sbjct: 565 CGMGNMDRAIQTVKEMQKLRH-RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPT 623
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 548
+ T N ++ KA E+ +E T A S +E+TY+ +++ A
Sbjct: 624 VHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSA-------------NEHTYTKIMQGYA 670
Query: 549 ----TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI 604
T +EYF + G +D + LL ++G+ A + A I
Sbjct: 671 SVGDTGKAFEYFTRLQN----EGLDVDIFTYEALLKACCKSGRMQ-SALAVTKEMSARNI 725
Query: 605 PHPLFFTEMLIQA 617
P F +LI
Sbjct: 726 PRNSFVYNILIDG 738
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 157/364 (43%), Gaps = 48/364 (13%)
Query: 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK---ELVKLIERMRQKPSKR----IK 299
A +F M+++ + PD+ Y+++ +G + + VK ++++R +P+ R I
Sbjct: 538 AFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 596
Query: 300 NMHRKNWD-----PVLE--------PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346
+ + K+ D V + P + +N ++N V Q + + ++ +G+
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVS 656
Query: 347 PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAA 406
+ TY M+ G E+F ++ G + TY+ L++A + G++ A+A
Sbjct: 657 ANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAV 716
Query: 407 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 466
+ M R + + VY L G +A +++++K KP T+T I +
Sbjct: 717 TKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKK-EGVKPDIHTYTSFISACS 775
Query: 467 DGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 525
G ++ + M+ +PNI T ++K ++R + KA +EE
Sbjct: 776 KAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEM---------- 825
Query: 526 LSGDGAPLKPDEYTY----SSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 581
+KPD+ Y +S+L ++ A Y+Y G+ ++ C+ + A L+V+
Sbjct: 826 ---KAMGIKPDKAVYHCLLTSLLSRASIAEA-----YIYSGV-MTICK--EMVEAGLIVD 874
Query: 582 ASRA 585
A
Sbjct: 875 MGTA 878
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/343 (16%), Positives = 139/343 (40%), Gaps = 15/343 (4%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
+ P +Y ++++A +++++ G++ S TY + + ++G +
Sbjct: 340 ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAAD 399
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429
+F + + + + A Y ++ A + + A A VR ME+ G+ ++Y+ +
Sbjct: 400 YWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY 459
Query: 430 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPN 488
+ ++V +++K + P +T+ LI G I + + + MK+ + N
Sbjct: 460 TMVADEKKGLVVFKRLKECGFT-PTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHN 518
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 548
+ T + M+ + + ++ A +FE+ + +KPD Y++++ A
Sbjct: 519 LKTYSMMINGFVKLKDWANAFAVFEDMVKEG-------------MKPDVILYNNIISAFC 565
Query: 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608
+ K M + ++ +++G FD + G +P
Sbjct: 566 GMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVH 625
Query: 609 FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 651
F ++ + + EKAV +++ M A E +T++ +
Sbjct: 626 TFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQG 668
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/402 (21%), Positives = 155/402 (38%), Gaps = 70/402 (17%)
Query: 207 RQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266
+ A W G ++ R + Y L+ I + G R+ + M++D YP A
Sbjct: 133 KLAYKFFVWCGGQENFRHTAN--CYHLLMKIFAECGEYKAMCRLIDEMIKDG--YPTTAC 188
Query: 267 -YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325
++ + T G+ GL +++V+ + ++ K N+ P YNA+L++ +
Sbjct: 189 TFNLLICTCGEAGLARDVVE--QFIKSKTF---------NYRPYKHS----YNAILHSLL 233
Query: 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385
Q+K + WV++Q+ + G P TY + M + GK D ++ +M K G +
Sbjct: 234 GVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLY 293
Query: 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 445
TY +L+ K A+ + +M + GV
Sbjct: 294 TYNILLHHLATGNKPLAALNLLNHMREVGV------------------------------ 323
Query: 446 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIF-QHMKDHCEPNIGTVNAMLKVYSRNDM 504
+P I FT LI G ++ C + +K C P++ M+ Y
Sbjct: 324 ------EPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGE 377
Query: 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 564
KA+E+F+E T P+ +TY+SM+ A +++ + K M
Sbjct: 378 LEKAEEMFKEMTEKGQL-------------PNVFTYNSMIRGFCMAGKFKEACALLKEME 424
Query: 565 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 606
GC + ++ L+ AGK ++E G H
Sbjct: 425 SRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKGHYVH 466
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 125/327 (38%), Gaps = 19/327 (5%)
Query: 384 ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE 443
A Y +L++ F E G+ + M + G TA + L C G +D +
Sbjct: 152 ANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFI 211
Query: 444 KIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRN 502
K K+ + +P + ++ ++ S + +++ M +D P++ T N ++ R
Sbjct: 212 KSKTFNY-RPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRL 270
Query: 503 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 562
+ L +E + DG PD YTY+ +L AT ++ +
Sbjct: 271 GKTDRLYRLLDEMVK-----------DG--FSPDLYTYNILLHHLATGNKPLAALNLLNH 317
Query: 563 MALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 622
M G + L+ SRAGK ++ D ++ G P + +T M+ I
Sbjct: 318 MREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGE 377
Query: 623 YEKAVALINAM---AYAPFHITERQWTELF-ESNEDRISRDKLEKLLNALCNCNAASSEI 678
EKA + M P T F + + + + L+++ + CN N
Sbjct: 378 LEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYST 437
Query: 679 TVSNLSRALHALCRSEKERDLSSSAHF 705
V+NL A L E +D+ H+
Sbjct: 438 LVNNLKNAGKVLEAHEVVKDMVEKGHY 464
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 139/331 (41%), Gaps = 35/331 (10%)
Query: 263 DIAAYHSVAVTL-----GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317
D Y+ V TL + G + + KL + MR++ +E D+ VY
Sbjct: 288 DGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERG---------------IESDVHVY 332
Query: 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK 377
++++ K F +F +L + GL PS+ TYG ++ + + G+ +M
Sbjct: 333 TSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQS 392
Query: 378 SGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 437
G I + + L+ + +G ++EA MEQ+G +A C R+ +
Sbjct: 393 KGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDE 452
Query: 438 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAML 496
A + ++ K +++T LI G++++ +F M +PN T N M+
Sbjct: 453 AKQWLFRMME-GGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMI 511
Query: 497 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 556
Y + +A++L RAN + +G + PD YTY+S++ A +
Sbjct: 512 YAYCKQGKIKEARKL-----RAN------MEANG--MDPDSYTYTSLIHGECIADNVDEA 558
Query: 557 EYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
++ M L G + + ++ S+AGK
Sbjct: 559 MRLFSEMGLKGLDQNSVTYTVMISGLSKAGK 589
Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/435 (19%), Positives = 179/435 (41%), Gaps = 36/435 (8%)
Query: 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLY 261
D G + + + V D++ D +S V+ L K R L IF M++
Sbjct: 166 DNGMFEEGLRVFDYMVKKGLSIDERSCIVF---LVAAKKRRRIDLCLEIFRRMVD----- 217
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKR-IKNMHRKNWDPVLEPDLVVYNAV 320
V +T+ + ++ E L R + SK+ IK K ++P+ YN +
Sbjct: 218 ------SGVKITVYSLTIVVE--GLCRRGEVEKSKKLIKEFSVKG----IKPEAYTYNTI 265
Query: 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE 380
+NA V + GV V K ++K G+ + TY L ME+ +++GK + F +M + G
Sbjct: 266 INAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGI 325
Query: 381 AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440
Y L+ +G + A + ++G+ ++ Y L +C G A +
Sbjct: 326 ESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEI 385
Query: 441 VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVY 499
++ +++S + ++ F LI G +D+ I+ M+ + ++ T N + +
Sbjct: 386 LMNEMQS-KGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCF 444
Query: 500 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 559
+R + +AK+ + F +G +K +Y+++++ E + +
Sbjct: 445 NRLKRYDEAKQ------------WLFRMMEGG-VKLSTVSYTNLIDVYCKEGNVEEAKRL 491
Query: 560 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619
+ M+ G Q + + ++ + GK ++ G P +T ++ +
Sbjct: 492 FVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECI 551
Query: 620 QSNYEKAVALINAMA 634
N ++A+ L + M
Sbjct: 552 ADNVDEAMRLFSEMG 566
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 16/177 (9%)
Query: 215 WVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274
W++ + + S YT L+ + K G EA R+F + + + P+ Y+ +
Sbjct: 456 WLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLF-VEMSSKGVQPNAITYNVMIYAY 514
Query: 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334
+ G +KE KL M ++PD Y ++++ +
Sbjct: 515 CKQGKIKEARKLRANMEANG---------------MDPDSYTYTSLIHGECIADNVDEAM 559
Query: 335 WVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391
+F ++ GL ++ TY + + + ++GK D + +M + G I Y L+
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALI 616
Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 49/116 (42%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369
++P+ + YN ++ A + K + + +G+ P + TY + + D
Sbjct: 500 VQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAM 559
Query: 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 425
F +M G ++TY V++ + GK +EA M+++G VY L
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTAL 615
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/429 (19%), Positives = 176/429 (41%), Gaps = 54/429 (12%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-VYTKLLAILGKAGRPHEALRIFNLM 254
++ G G +A+ +L G+ L ++ +++ L +GR EA +F
Sbjct: 275 IIMGFAKSGDPSKALQLL----GMAQATGLSAKTATLVSIISALADSGRTLEAEALFE-E 329
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---PSKRIKNM------HRKN 305
L + P AY+++ + G LK+ ++ M ++ P + ++ +
Sbjct: 330 LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGR 389
Query: 306 WDPV-----------LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354
W+ ++P+ V++ +L +W+ F V K+++ G+KP Y +
Sbjct: 390 WESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNV 449
Query: 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414
++ + D F +M G +T+ L+ + G+ A ME+RG
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509
Query: 415 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474
+ A+ Y + + RW D ++ K+KS + P +T T L+ G +D
Sbjct: 510 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKS-QGILPNVVTHTTLVDVYGKSGRFNDA 568
Query: 475 ISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT----------------- 516
I + MK +P+ NA++ Y++ + +A F T
Sbjct: 569 IECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINA 628
Query: 517 ----RANSSGYT---FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 569
R ++ + ++ +G +KPD TY+++++A +++ VY+ M +SGC+
Sbjct: 629 FGEDRRDAEAFAVLQYMKENG--VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCK 686
Query: 570 LDQTKHAWL 578
D+ + L
Sbjct: 687 PDRKARSML 695
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 125/302 (41%), Gaps = 19/302 (6%)
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
+F++LR+SG+KP Y ++ +++G +M K G + TY +L+ A+
Sbjct: 326 LFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYV 385
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
G+ A ++ ME V + V+ L + G WQ V++++KS+ KP +
Sbjct: 386 NAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSI-GVKP-D 443
Query: 456 ITFTGLIISSMDGGH-IDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFE 513
F ++I + + +D ++ F M + EP+ T N ++ + ++ A+E+FE
Sbjct: 444 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 503
Query: 514 ETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 573
R P TY+ M+ + +W+ + + M G +
Sbjct: 504 AMERRGC-------------LPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVV 550
Query: 574 KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNY-EKAVALINA 632
H L+ ++G+ + + + G P + LI A Q E+AV
Sbjct: 551 THTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNA-LINAYAQRGLSEQAVNAFRV 609
Query: 633 MA 634
M
Sbjct: 610 MT 611
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/383 (20%), Positives = 156/383 (40%), Gaps = 45/383 (11%)
Query: 209 AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268
A +V+ W+ K +Y+ L+ LG++ + +EA L+ + L P Y+
Sbjct: 150 AYAVVSWLQ--KHNLCFSYELLYSILIHALGRSEKLYEAF----LLSQKQTLTP--LTYN 201
Query: 269 SVAVTLGQVGLLKELVKLIERMRQKP--------SKRIKNMHRKN-WDPV---------- 309
++ + +++ + LI +MRQ S I+++ R N D V
Sbjct: 202 ALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIE 261
Query: 310 ---LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYD 366
LE D+ + N ++ S + + +GL AT + + SG+
Sbjct: 262 RDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTL 321
Query: 367 LVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELA 426
F ++ +SG Y L++ + + G + +A + V ME+RGV Y L
Sbjct: 322 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLI 381
Query: 427 CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HC 485
N GRW+ A +V++++++ +P F+ L+ D G + + MK
Sbjct: 382 DAYVNAGRWESARIVLKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGV 440
Query: 486 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 545
+P+ N ++ + + + A F+ R S G ++PD T++++++
Sbjct: 441 KPDRQFYNVVIDTFGKFNCLDHAMTTFD---RMLSEG----------IEPDRVTWNTLID 487
Query: 546 ASATAHQWEYFEYVYKGMALSGC 568
+ E +++ M GC
Sbjct: 488 CHCKHGRHIVAEEMFEAMERRGC 510
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,693,522
Number of Sequences: 539616
Number of extensions: 12935419
Number of successful extensions: 43064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 38855
Number of HSP's gapped (non-prelim): 2123
length of query: 880
length of database: 191,569,459
effective HSP length: 126
effective length of query: 754
effective length of database: 123,577,843
effective search space: 93177693622
effective search space used: 93177693622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)