Query 002795
Match_columns 880
No_of_seqs 754 out of 3905
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-67 2.2E-72 651.4 47.8 589 128-795 133-741 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.5E-66 5.4E-71 639.1 51.0 542 151-764 47-594 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.9E-63 4.2E-68 602.1 69.3 513 150-704 365-904 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6.3E-63 1.4E-67 597.7 68.8 509 128-678 382-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.8E-60 6.1E-65 572.0 47.9 467 188-705 85-553 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6E-58 1.3E-62 551.8 54.0 474 152-674 84-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-27 2.7E-32 299.0 67.5 522 129-705 274-795 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-26 2.7E-31 290.0 71.2 518 130-704 377-895 (899)
9 PRK11447 cellulose synthase su 99.9 1.8E-18 3.9E-23 219.4 66.7 582 116-758 28-746 (1157)
10 PRK11447 cellulose synthase su 99.9 1.5E-17 3.3E-22 211.0 62.2 555 154-759 27-704 (1157)
11 PRK09782 bacteriophage N4 rece 99.8 9.3E-16 2E-20 186.4 56.1 512 127-704 55-667 (987)
12 PRK11788 tetratricopeptide rep 99.8 1E-17 2.2E-22 189.0 36.9 296 199-519 44-348 (389)
13 KOG4626 O-linked N-acetylgluco 99.8 4.3E-17 9.2E-22 175.5 37.2 433 158-643 51-490 (966)
14 PRK11788 tetratricopeptide rep 99.8 2.4E-17 5.1E-22 186.0 37.2 302 274-643 45-354 (389)
15 KOG4626 O-linked N-acetylgluco 99.8 4.6E-16 1E-20 167.6 39.0 448 193-691 51-504 (966)
16 PRK09782 bacteriophage N4 rece 99.8 3.6E-14 7.8E-19 172.6 59.1 510 127-703 89-700 (987)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-14 3.6E-19 172.1 53.7 410 157-600 129-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-14 3.4E-19 172.3 51.1 96 191-293 128-223 (615)
19 PRK15174 Vi polysaccharide exp 99.8 1.1E-14 2.3E-19 173.4 48.2 335 156-519 43-382 (656)
20 PRK15174 Vi polysaccharide exp 99.8 1.2E-14 2.7E-19 172.8 46.8 334 190-566 42-381 (656)
21 PRK10049 pgaA outer membrane p 99.8 8.4E-14 1.8E-18 169.3 52.2 303 153-483 13-338 (765)
22 PRK10049 pgaA outer membrane p 99.7 9E-14 1.9E-18 169.0 50.0 424 176-634 3-454 (765)
23 KOG4422 Uncharacterized conser 99.7 1.6E-13 3.6E-18 142.5 42.6 421 229-674 117-593 (625)
24 KOG2002 TPR-containing nuclear 99.7 6.8E-13 1.5E-17 151.2 46.0 566 132-762 146-752 (1018)
25 KOG4422 Uncharacterized conser 99.7 1.7E-12 3.7E-17 135.1 43.9 440 158-637 119-591 (625)
26 KOG2002 TPR-containing nuclear 99.7 3.6E-12 7.7E-17 145.5 50.2 464 171-674 252-748 (1018)
27 PRK14574 hmsH outer membrane p 99.7 2.1E-11 4.5E-16 145.9 57.0 449 154-634 33-511 (822)
28 PRK14574 hmsH outer membrane p 99.7 2.9E-11 6.3E-16 144.6 55.6 450 193-683 38-523 (822)
29 KOG2003 TPR repeat-containing 99.6 7.7E-13 1.7E-17 138.0 32.3 483 157-668 203-719 (840)
30 KOG2076 RNA polymerase III tra 99.6 2.3E-10 5.1E-15 130.2 50.6 558 113-702 136-762 (895)
31 KOG1915 Cell cycle control pro 99.6 4.8E-09 1E-13 111.1 52.0 495 156-698 74-614 (677)
32 KOG2076 RNA polymerase III tra 99.6 1.6E-09 3.4E-14 123.6 52.0 483 160-671 144-695 (895)
33 KOG2003 TPR repeat-containing 99.6 5.3E-11 1.2E-15 124.4 36.7 440 188-673 199-691 (840)
34 KOG1915 Cell cycle control pro 99.5 6.3E-09 1.4E-13 110.2 47.1 441 188-673 71-538 (677)
35 KOG0495 HAT repeat protein [RN 99.5 4.1E-08 8.9E-13 108.0 52.6 464 163-674 414-883 (913)
36 KOG0495 HAT repeat protein [RN 99.5 2.8E-08 6.1E-13 109.2 51.0 358 202-599 418-780 (913)
37 KOG1155 Anaphase-promoting com 99.4 4.9E-08 1.1E-12 103.7 43.9 254 323-600 236-494 (559)
38 PRK10747 putative protoheme IX 99.4 4E-09 8.7E-14 118.6 37.9 283 327-634 97-388 (398)
39 PRK10747 putative protoheme IX 99.4 4.8E-09 1E-13 117.9 38.5 281 241-563 97-387 (398)
40 KOG1155 Anaphase-promoting com 99.4 4.9E-08 1.1E-12 103.7 42.0 381 187-634 161-551 (559)
41 KOG4318 Bicoid mRNA stability 99.4 2.6E-09 5.7E-14 120.9 34.5 132 540-674 462-597 (1088)
42 TIGR00540 hemY_coli hemY prote 99.3 4.6E-09 9.9E-14 118.8 36.0 293 202-517 96-398 (409)
43 TIGR00540 hemY_coli hemY prote 99.3 7E-09 1.5E-13 117.3 36.8 289 239-564 95-397 (409)
44 PF13429 TPR_15: Tetratricopep 99.3 1.3E-11 2.9E-16 132.2 13.4 261 160-446 13-275 (280)
45 PF13429 TPR_15: Tetratricopep 99.3 1.6E-11 3.5E-16 131.6 12.8 262 233-517 13-276 (280)
46 KOG1126 DNA-binding cell divis 99.3 6.1E-10 1.3E-14 123.4 24.8 281 170-483 334-619 (638)
47 KOG4318 Bicoid mRNA stability 99.3 1.2E-09 2.6E-14 123.6 26.7 270 250-584 12-283 (1088)
48 KOG2047 mRNA splicing factor [ 99.3 2.1E-06 4.4E-11 94.9 50.0 488 134-671 120-687 (835)
49 KOG2047 mRNA splicing factor [ 99.2 6E-06 1.3E-10 91.3 51.3 507 158-711 105-689 (835)
50 KOG1126 DNA-binding cell divis 99.2 2.8E-09 6E-14 118.2 25.4 284 205-518 334-620 (638)
51 COG2956 Predicted N-acetylgluc 99.2 4.5E-08 9.7E-13 99.6 31.6 266 231-518 72-347 (389)
52 KOG0547 Translocase of outer m 99.2 1.3E-07 2.8E-12 101.1 35.3 405 158-634 118-564 (606)
53 COG2956 Predicted N-acetylgluc 99.2 7.5E-08 1.6E-12 98.0 31.3 301 158-483 39-346 (389)
54 COG3071 HemY Uncharacterized e 99.2 1.3E-07 2.9E-12 99.3 34.1 285 327-634 97-388 (400)
55 KOG1173 Anaphase-promoting com 99.2 6.9E-07 1.5E-11 97.6 40.6 459 150-652 44-532 (611)
56 KOG0547 Translocase of outer m 99.2 8E-08 1.7E-12 102.7 32.6 215 468-705 339-562 (606)
57 COG3071 HemY Uncharacterized e 99.1 2.7E-07 6E-12 97.0 34.1 287 203-518 97-390 (400)
58 TIGR02521 type_IV_pilW type IV 99.1 3.4E-08 7.4E-13 101.9 27.3 198 192-411 33-230 (234)
59 PF13041 PPR_2: PPR repeat fam 99.1 2E-10 4.4E-15 87.3 6.4 50 312-361 1-50 (50)
60 TIGR02521 type_IV_pilW type IV 99.1 6.8E-08 1.5E-12 99.6 27.3 201 227-447 30-231 (234)
61 KOG3785 Uncharacterized conser 99.0 3.8E-06 8.2E-11 86.5 36.5 449 162-675 29-494 (557)
62 PRK12370 invasion protein regu 99.0 1.8E-07 4E-12 109.8 31.3 250 205-483 276-534 (553)
63 PF13041 PPR_2: PPR repeat fam 99.0 6.4E-10 1.4E-14 84.6 6.8 50 382-431 1-50 (50)
64 PRK12370 invasion protein regu 99.0 1.2E-07 2.7E-12 111.3 29.2 250 242-519 275-536 (553)
65 KOG1156 N-terminal acetyltrans 99.0 3.8E-05 8.2E-10 85.6 45.0 443 158-638 11-470 (700)
66 KOG3785 Uncharacterized conser 99.0 4.3E-06 9.2E-11 86.1 32.9 422 160-647 62-499 (557)
67 KOG1173 Anaphase-promoting com 98.9 6.6E-06 1.4E-10 90.1 35.8 292 310-617 240-532 (611)
68 KOG1156 N-terminal acetyltrans 98.9 7.3E-05 1.6E-09 83.4 43.8 124 494-633 376-508 (700)
69 PF12569 NARP1: NMDA receptor- 98.9 2.5E-06 5.3E-11 97.3 32.3 301 273-633 13-331 (517)
70 KOG1129 TPR repeat-containing 98.9 1.8E-07 3.8E-12 95.1 19.7 229 268-518 227-458 (478)
71 KOG1129 TPR repeat-containing 98.9 2.4E-07 5.3E-12 94.2 19.8 228 194-447 227-457 (478)
72 KOG1840 Kinesin light chain [C 98.9 1.2E-06 2.7E-11 98.6 27.4 247 190-445 199-476 (508)
73 PF12569 NARP1: NMDA receptor- 98.8 1.8E-05 3.9E-10 90.4 36.3 289 237-566 13-334 (517)
74 KOG2376 Signal recognition par 98.8 0.00015 3.2E-09 80.2 40.5 441 191-694 13-506 (652)
75 KOG1840 Kinesin light chain [C 98.8 7.9E-07 1.7E-11 100.1 24.2 250 154-411 198-477 (508)
76 KOG4162 Predicted calmodulin-b 98.8 0.00021 4.6E-09 81.3 42.6 409 226-673 321-785 (799)
77 KOG1174 Anaphase-promoting com 98.8 0.0002 4.2E-09 75.8 38.2 283 328-634 210-498 (564)
78 KOG2376 Signal recognition par 98.8 0.00077 1.7E-08 74.7 44.3 451 156-668 13-517 (652)
79 PRK11189 lipoprotein NlpI; Pro 98.8 4.9E-06 1.1E-10 89.6 27.7 223 165-416 36-268 (296)
80 KOG1174 Anaphase-promoting com 98.7 0.00057 1.2E-08 72.4 40.5 315 340-680 185-508 (564)
81 cd05804 StaR_like StaR_like; a 98.7 6.8E-05 1.5E-09 83.3 36.4 306 192-518 8-336 (355)
82 KOG3616 Selective LIM binding 98.7 9.5E-05 2.1E-09 82.6 35.6 216 323-596 715-932 (1636)
83 KOG4162 Predicted calmodulin-b 98.7 0.00011 2.4E-09 83.6 35.3 292 310-634 476-781 (799)
84 PRK11189 lipoprotein NlpI; Pro 98.7 1.7E-05 3.6E-10 85.5 28.3 152 205-376 41-192 (296)
85 cd05804 StaR_like StaR_like; a 98.7 0.00014 3E-09 80.8 36.5 272 227-518 5-293 (355)
86 COG3063 PilF Tfp pilus assembl 98.7 1.9E-05 4E-10 77.6 24.8 200 157-378 37-236 (250)
87 KOG0985 Vesicle coat protein c 98.6 0.00074 1.6E-08 78.5 38.7 339 111-509 998-1374(1666)
88 COG3063 PilF Tfp pilus assembl 98.6 5.4E-05 1.2E-09 74.5 25.3 196 353-564 39-234 (250)
89 KOG0548 Molecular co-chaperone 98.6 0.00054 1.2E-08 75.3 35.1 401 163-619 10-471 (539)
90 KOG3616 Selective LIM binding 98.5 0.00043 9.4E-09 77.6 34.0 111 163-290 740-850 (1636)
91 KOG1127 TPR repeat-containing 98.5 0.0014 3E-08 76.7 38.3 434 170-660 473-941 (1238)
92 KOG4340 Uncharacterized conser 98.5 0.00046 1E-08 70.0 30.3 326 158-516 13-373 (459)
93 KOG1914 mRNA cleavage and poly 98.5 0.0045 9.7E-08 68.1 39.5 138 150-294 15-167 (656)
94 PRK04841 transcriptional regul 98.5 0.00062 1.3E-08 85.9 39.1 382 156-567 342-761 (903)
95 KOG1125 TPR repeat-containing 98.4 1.5E-05 3.1E-10 87.9 19.6 216 359-599 295-525 (579)
96 PRK04841 transcriptional regul 98.4 0.0019 4.1E-08 81.5 41.7 343 237-601 383-760 (903)
97 KOG3617 WD40 and TPR repeat-co 98.4 0.0016 3.5E-08 74.3 35.3 242 188-482 724-994 (1416)
98 PF04733 Coatomer_E: Coatomer 98.4 5.7E-06 1.2E-10 88.0 15.7 253 273-571 10-268 (290)
99 KOG1127 TPR repeat-containing 98.4 0.0011 2.3E-08 77.6 34.5 425 154-633 491-949 (1238)
100 KOG3617 WD40 and TPR repeat-co 98.4 0.0063 1.4E-07 69.7 38.6 312 152-517 754-1108(1416)
101 KOG0985 Vesicle coat protein c 98.4 0.0067 1.5E-07 71.0 39.3 355 177-620 969-1326(1666)
102 KOG1914 mRNA cleavage and poly 98.3 0.0091 2E-07 65.8 42.1 186 471-672 309-502 (656)
103 PF04733 Coatomer_E: Coatomer 98.3 2.9E-05 6.3E-10 82.7 18.8 246 167-447 13-264 (290)
104 KOG4340 Uncharacterized conser 98.3 0.00019 4.2E-09 72.6 23.0 299 185-514 5-335 (459)
105 KOG0624 dsRNA-activated protei 98.3 0.002 4.4E-08 66.8 30.6 305 153-488 36-374 (504)
106 KOG1125 TPR repeat-containing 98.3 8.8E-05 1.9E-09 81.9 22.2 219 324-564 295-525 (579)
107 PF12854 PPR_1: PPR repeat 98.3 8.8E-07 1.9E-11 60.7 3.9 32 379-410 2-33 (34)
108 KOG1070 rRNA processing protei 98.3 0.00033 7.2E-09 84.2 27.2 219 178-418 1447-1668(1710)
109 PLN02789 farnesyltranstransfer 98.2 0.00081 1.8E-08 72.6 27.6 215 157-396 39-267 (320)
110 PF12854 PPR_1: PPR repeat 98.2 1.9E-06 4.2E-11 59.0 4.0 32 259-290 2-33 (34)
111 PLN02789 farnesyltranstransfer 98.2 0.0011 2.4E-08 71.6 27.0 205 202-431 49-267 (320)
112 KOG0624 dsRNA-activated protei 98.1 0.013 2.9E-07 60.9 31.8 314 189-565 37-369 (504)
113 KOG0548 Molecular co-chaperone 98.1 0.022 4.7E-07 63.1 35.2 376 119-517 5-454 (539)
114 KOG1070 rRNA processing protei 98.1 0.0015 3.2E-08 78.9 28.1 204 310-519 1454-1664(1710)
115 KOG1128 Uncharacterized conser 98.1 0.0003 6.4E-09 79.7 21.1 213 195-447 403-615 (777)
116 TIGR03302 OM_YfiO outer membra 98.0 0.00091 2E-08 69.5 21.0 187 310-518 29-232 (235)
117 TIGR03302 OM_YfiO outer membra 98.0 0.00092 2E-08 69.5 20.8 185 226-447 31-231 (235)
118 KOG1128 Uncharacterized conser 98.0 0.00045 9.8E-09 78.3 18.9 214 386-635 400-615 (777)
119 COG5010 TadD Flp pilus assembl 97.9 0.0013 2.9E-08 66.3 19.9 157 194-373 70-226 (257)
120 COG5010 TadD Flp pilus assembl 97.9 0.0019 4.1E-08 65.2 20.0 165 227-412 66-230 (257)
121 PRK15179 Vi polysaccharide bio 97.9 0.0016 3.4E-08 77.5 22.9 169 110-293 49-217 (694)
122 PRK14720 transcript cleavage f 97.9 0.0034 7.5E-08 75.4 25.4 152 315-500 117-268 (906)
123 KOG2053 Mitochondrial inherita 97.9 0.12 2.6E-06 60.7 54.1 509 164-716 52-620 (932)
124 PRK15179 Vi polysaccharide bio 97.8 0.0022 4.7E-08 76.3 23.0 149 185-356 81-229 (694)
125 PRK10370 formate-dependent nit 97.8 0.0029 6.3E-08 63.6 19.7 150 235-415 23-175 (198)
126 PRK14720 transcript cleavage f 97.8 0.0065 1.4E-07 73.1 25.5 239 226-550 29-270 (906)
127 COG4783 Putative Zn-dependent 97.7 0.031 6.7E-07 61.4 27.6 185 310-518 270-454 (484)
128 PRK10370 formate-dependent nit 97.7 0.0013 2.9E-08 66.0 16.4 119 168-293 52-173 (198)
129 KOG3081 Vesicle coat complex C 97.7 0.032 6.8E-07 56.5 25.3 151 271-447 115-270 (299)
130 KOG3060 Uncharacterized conser 97.7 0.018 3.8E-07 57.9 23.2 128 231-377 55-182 (289)
131 KOG3081 Vesicle coat complex C 97.7 0.016 3.4E-07 58.7 22.9 136 464-622 117-256 (299)
132 PRK15359 type III secretion sy 97.7 0.0013 2.9E-08 62.4 15.2 95 193-293 27-121 (144)
133 TIGR00756 PPR pentatricopeptid 97.7 6.1E-05 1.3E-09 51.9 4.0 33 316-348 2-34 (35)
134 PRK15359 type III secretion sy 97.6 0.0019 4.2E-08 61.3 15.4 101 157-265 26-126 (144)
135 PF13812 PPR_3: Pentatricopept 97.6 9E-05 2E-09 50.8 4.0 33 315-347 2-34 (34)
136 TIGR02552 LcrH_SycD type III s 97.6 0.0023 5.1E-08 59.9 15.1 109 178-293 6-114 (135)
137 TIGR00756 PPR pentatricopeptid 97.5 0.00013 2.8E-09 50.2 4.3 33 386-418 2-34 (35)
138 TIGR02552 LcrH_SycD type III s 97.5 0.0035 7.7E-08 58.6 15.3 106 227-352 16-121 (135)
139 COG4783 Putative Zn-dependent 97.5 0.027 5.9E-07 61.8 23.3 113 202-337 318-431 (484)
140 PF13812 PPR_3: Pentatricopept 97.4 0.0002 4.4E-09 49.0 4.3 33 385-417 2-34 (34)
141 KOG3060 Uncharacterized conser 97.4 0.12 2.7E-06 52.0 23.8 158 425-600 58-219 (289)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0056 1.2E-07 67.6 16.0 127 190-341 169-295 (395)
143 KOG2053 Mitochondrial inherita 97.3 0.67 1.5E-05 54.7 50.3 224 167-416 21-258 (932)
144 PF01535 PPR: PPR repeat; Int 97.2 0.00036 7.8E-09 46.5 3.2 31 315-345 1-31 (31)
145 PF10037 MRP-S27: Mitochondria 97.2 0.0028 6E-08 70.3 11.8 123 310-432 62-186 (429)
146 PF09976 TPR_21: Tetratricopep 97.2 0.013 2.9E-07 55.7 15.1 129 156-290 13-144 (145)
147 PF07079 DUF1347: Protein of u 97.2 0.53 1.2E-05 51.4 39.7 415 200-647 16-530 (549)
148 PF01535 PPR: PPR repeat; Int 97.1 0.00047 1E-08 46.0 3.3 29 386-414 2-30 (31)
149 PF09976 TPR_21: Tetratricopep 97.1 0.017 3.7E-07 54.9 15.2 130 191-340 13-144 (145)
150 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.013 2.9E-07 64.6 16.3 124 388-517 173-296 (395)
151 PF10037 MRP-S27: Mitochondria 97.1 0.0044 9.6E-08 68.7 12.2 126 259-397 61-186 (429)
152 PF08579 RPM2: Mitochondrial r 97.1 0.0064 1.4E-07 53.3 10.5 78 318-395 29-115 (120)
153 PF08579 RPM2: Mitochondrial r 97.1 0.0065 1.4E-07 53.3 10.3 80 352-431 28-116 (120)
154 KOG2796 Uncharacterized conser 97.0 0.035 7.5E-07 55.9 16.3 168 113-293 145-315 (366)
155 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.028 6.1E-07 50.8 14.2 101 192-293 4-105 (119)
156 PF14938 SNAP: Soluble NSF att 96.9 0.051 1.1E-06 58.1 18.0 89 324-413 124-225 (282)
157 PF05843 Suf: Suppressor of fo 96.9 0.016 3.4E-07 61.9 14.0 96 192-292 3-98 (280)
158 cd00189 TPR Tetratricopeptide 96.9 0.014 3E-07 49.4 11.4 19 237-255 9-27 (100)
159 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.028 6E-07 50.9 13.8 94 354-447 7-104 (119)
160 PF05843 Suf: Suppressor of fo 96.9 0.015 3.3E-07 61.9 13.8 132 229-378 2-136 (280)
161 cd00189 TPR Tetratricopeptide 96.9 0.017 3.7E-07 48.9 11.8 94 193-292 3-96 (100)
162 PF06239 ECSIT: Evolutionarily 96.8 0.016 3.5E-07 57.2 11.7 87 348-434 46-153 (228)
163 PF06239 ECSIT: Evolutionarily 96.8 0.022 4.8E-07 56.2 12.4 86 262-362 45-151 (228)
164 PLN03088 SGT1, suppressor of 96.7 0.032 6.9E-07 61.7 14.9 104 160-271 7-110 (356)
165 PF14938 SNAP: Soluble NSF att 96.6 0.17 3.7E-06 54.1 19.5 213 155-412 35-265 (282)
166 PLN03088 SGT1, suppressor of 96.6 0.045 9.8E-07 60.5 15.0 91 197-293 9-99 (356)
167 KOG2280 Vacuolar assembly/sort 96.5 1.1 2.3E-05 52.1 25.3 324 159-514 441-795 (829)
168 PRK10153 DNA-binding transcrip 96.4 0.2 4.4E-06 58.0 19.4 139 184-343 331-482 (517)
169 COG4700 Uncharacterized protei 96.3 0.23 5E-06 47.7 15.7 137 151-292 85-221 (251)
170 PRK15363 pathogenicity island 96.3 0.16 3.5E-06 48.0 14.5 99 156-259 36-134 (157)
171 PF04840 Vps16_C: Vps16, C-ter 96.3 2.2 4.8E-05 46.1 28.0 126 491-655 179-304 (319)
172 PF04840 Vps16_C: Vps16, C-ter 96.3 2.2 4.9E-05 46.1 27.4 106 386-511 179-284 (319)
173 PRK02603 photosystem I assembl 96.2 0.16 3.5E-06 49.8 15.2 87 153-243 33-121 (172)
174 KOG0553 TPR repeat-containing 96.2 0.055 1.2E-06 56.0 11.8 101 498-617 90-192 (304)
175 PRK15363 pathogenicity island 96.2 0.3 6.6E-06 46.2 15.9 98 354-453 40-137 (157)
176 PF12895 Apc3: Anaphase-promot 96.2 0.012 2.5E-07 50.0 6.1 48 397-444 2-50 (84)
177 CHL00033 ycf3 photosystem I as 96.1 0.11 2.4E-06 50.7 13.5 96 228-339 35-138 (168)
178 PRK02603 photosystem I assembl 96.1 0.21 4.6E-06 48.9 15.5 113 383-518 34-149 (172)
179 PF12895 Apc3: Anaphase-promot 96.1 0.013 2.9E-07 49.7 5.9 81 362-444 2-83 (84)
180 PF12688 TPR_5: Tetratrico pep 96.1 0.27 5.8E-06 44.8 14.4 111 160-276 6-118 (120)
181 KOG2041 WD40 repeat protein [G 96.0 4.1 8.9E-05 46.9 30.8 66 226-293 690-763 (1189)
182 PRK10153 DNA-binding transcrip 96.0 0.32 6.9E-06 56.4 18.2 137 381-519 334-483 (517)
183 COG4235 Cytochrome c biogenesi 96.0 0.2 4.3E-06 52.2 14.7 114 405-519 143-257 (287)
184 PF03704 BTAD: Bacterial trans 96.0 0.18 4E-06 47.7 13.9 117 201-351 17-138 (146)
185 PF14559 TPR_19: Tetratricopep 95.9 0.03 6.5E-07 45.1 7.1 64 201-271 2-65 (68)
186 PF14559 TPR_19: Tetratricopep 95.9 0.026 5.6E-07 45.5 6.7 54 466-519 2-55 (68)
187 KOG2041 WD40 repeat protein [G 95.9 4.6 9.9E-05 46.5 28.5 206 187-445 689-904 (1189)
188 PF08631 SPO22: Meiosis protei 95.8 3.2 6.9E-05 44.2 25.8 224 395-633 4-272 (278)
189 COG4700 Uncharacterized protei 95.8 1.7 3.6E-05 42.0 18.5 144 345-493 85-231 (251)
190 CHL00033 ycf3 photosystem I as 95.7 0.2 4.4E-06 48.8 13.5 81 314-395 35-117 (168)
191 PRK10866 outer membrane biogen 95.7 3.1 6.8E-05 43.2 23.2 62 160-222 37-101 (243)
192 PF13525 YfiO: Outer membrane 95.7 2 4.3E-05 43.3 20.7 175 356-556 12-197 (203)
193 KOG1130 Predicted G-alpha GTPa 95.7 0.22 4.8E-06 53.3 13.8 288 163-481 25-341 (639)
194 PRK10866 outer membrane biogen 95.6 3.4 7.4E-05 42.9 24.0 179 355-564 38-239 (243)
195 PF12921 ATP13: Mitochondrial 95.5 0.2 4.3E-06 46.1 11.4 89 189-277 1-101 (126)
196 KOG0553 TPR repeat-containing 95.5 0.14 3.1E-06 53.0 11.4 103 163-273 89-191 (304)
197 PF12688 TPR_5: Tetratrico pep 95.4 0.7 1.5E-05 42.1 14.4 57 391-447 8-66 (120)
198 PF13432 TPR_16: Tetratricopep 95.4 0.08 1.7E-06 42.2 7.4 58 196-257 3-60 (65)
199 PF13432 TPR_16: Tetratricopep 95.3 0.082 1.8E-06 42.1 7.5 57 462-518 4-60 (65)
200 PF13414 TPR_11: TPR repeat; P 95.1 0.13 2.8E-06 41.5 8.0 58 352-410 6-64 (69)
201 KOG2280 Vacuolar assembly/sort 95.0 9.5 0.00021 44.7 35.2 168 151-342 401-574 (829)
202 KOG2114 Vacuolar assembly/sort 95.0 6.8 0.00015 46.4 23.7 178 191-411 335-517 (933)
203 COG5107 RNA14 Pre-mRNA 3'-end 94.9 7.3 0.00016 42.8 33.5 139 150-294 37-191 (660)
204 KOG1130 Predicted G-alpha GTPa 94.9 0.22 4.9E-06 53.3 11.0 296 314-634 15-342 (639)
205 PF12921 ATP13: Mitochondrial 94.8 0.55 1.2E-05 43.2 12.1 95 488-582 1-98 (126)
206 PF13525 YfiO: Outer membrane 94.7 4.1 8.9E-05 41.0 19.6 59 163-221 13-73 (203)
207 COG4235 Cytochrome c biogenesi 94.5 1.4 3E-05 46.1 15.4 111 176-293 143-256 (287)
208 KOG0550 Molecular chaperone (D 94.4 3 6.5E-05 45.3 17.8 271 324-634 59-348 (486)
209 PF13414 TPR_11: TPR repeat; P 94.3 0.17 3.7E-06 40.8 7.0 62 456-517 4-66 (69)
210 KOG1538 Uncharacterized conser 94.3 3 6.4E-05 47.6 18.2 93 348-445 555-658 (1081)
211 PRK10803 tol-pal system protei 94.3 0.88 1.9E-05 47.8 13.8 101 155-257 143-246 (263)
212 KOG1585 Protein required for f 94.2 5.7 0.00012 40.2 18.1 214 150-407 26-250 (308)
213 KOG0550 Molecular chaperone (D 94.2 10 0.00022 41.4 23.2 89 465-568 259-352 (486)
214 PRK10803 tol-pal system protei 94.2 0.63 1.4E-05 48.9 12.5 100 228-343 143-246 (263)
215 PF03704 BTAD: Bacterial trans 94.2 0.25 5.4E-06 46.8 8.8 71 192-266 64-138 (146)
216 KOG1538 Uncharacterized conser 94.1 4.7 0.0001 46.0 19.3 169 332-517 618-801 (1081)
217 KOG1920 IkappaB kinase complex 94.0 20 0.00044 44.4 25.4 31 381-412 788-820 (1265)
218 PF13371 TPR_9: Tetratricopept 93.8 0.28 6.1E-06 40.0 7.4 56 198-257 3-58 (73)
219 PF13281 DUF4071: Domain of un 93.5 12 0.00027 41.0 21.1 161 355-518 147-334 (374)
220 PF13371 TPR_9: Tetratricopept 93.4 0.44 9.6E-06 38.8 7.9 57 463-519 3-59 (73)
221 PF13281 DUF4071: Domain of un 93.4 12 0.00026 41.1 20.7 26 646-671 309-334 (374)
222 KOG3941 Intermediate in Toll s 93.4 1.1 2.4E-05 45.9 11.8 106 311-435 64-174 (406)
223 PF04053 Coatomer_WDAD: Coatom 93.3 2.3 5E-05 48.2 15.8 81 313-408 346-426 (443)
224 KOG2796 Uncharacterized conser 93.2 11 0.00024 38.6 25.4 133 385-518 178-315 (366)
225 COG3898 Uncharacterized membra 93.1 15 0.00034 39.7 30.6 223 360-605 165-396 (531)
226 KOG3941 Intermediate in Toll s 93.0 1 2.3E-05 46.1 11.0 46 367-412 141-187 (406)
227 COG3898 Uncharacterized membra 93.0 16 0.00034 39.7 31.5 282 202-518 96-392 (531)
228 PF04184 ST7: ST7 protein; In 92.6 21 0.00046 40.2 21.6 199 316-529 171-386 (539)
229 smart00299 CLH Clathrin heavy 92.4 6.5 0.00014 36.7 15.3 42 355-397 13-54 (140)
230 PF13424 TPR_12: Tetratricopep 92.3 0.41 8.8E-06 39.7 6.2 62 230-291 7-73 (78)
231 PF10300 DUF3808: Protein of u 92.2 9.8 0.00021 43.8 19.3 111 207-341 174-294 (468)
232 PF13424 TPR_12: Tetratricopep 91.9 0.45 9.7E-06 39.4 6.0 67 190-256 5-74 (78)
233 PLN03098 LPA1 LOW PSII ACCUMUL 91.8 2.8 6.1E-05 46.6 13.5 66 382-447 73-140 (453)
234 PLN03098 LPA1 LOW PSII ACCUMUL 91.7 2.1 4.6E-05 47.6 12.4 67 485-566 71-141 (453)
235 smart00299 CLH Clathrin heavy 91.6 7.9 0.00017 36.2 14.9 86 317-410 10-95 (140)
236 PF10300 DUF3808: Protein of u 91.2 9.2 0.0002 44.0 17.6 185 246-447 175-375 (468)
237 PF10345 Cohesin_load: Cohesin 91.0 42 0.0009 40.2 36.3 133 159-292 104-253 (608)
238 PF07035 Mic1: Colon cancer-as 90.8 13 0.00029 35.8 15.4 124 533-672 25-150 (167)
239 PF04053 Coatomer_WDAD: Coatom 90.2 6.4 0.00014 44.7 14.9 133 155-339 295-427 (443)
240 PF08631 SPO22: Meiosis protei 90.2 28 0.00061 37.0 26.6 102 315-418 85-191 (278)
241 KOG4555 TPR repeat-containing 90.1 8.9 0.00019 34.9 12.4 93 199-295 52-146 (175)
242 PF09205 DUF1955: Domain of un 90.1 15 0.00032 33.7 15.1 33 535-567 118-150 (161)
243 PF09205 DUF1955: Domain of un 90.0 15 0.00033 33.6 15.9 139 240-416 14-152 (161)
244 KOG0543 FKBP-type peptidyl-pro 90.0 12 0.00027 40.8 15.9 94 457-565 259-354 (397)
245 COG1729 Uncharacterized protei 90.0 5.5 0.00012 41.2 12.7 99 157-257 144-244 (262)
246 PF13170 DUF4003: Protein of u 89.6 15 0.00033 39.3 16.4 129 280-425 78-223 (297)
247 PRK15331 chaperone protein Sic 89.6 10 0.00022 36.3 13.3 87 359-447 47-133 (165)
248 COG5107 RNA14 Pre-mRNA 3'-end 89.6 38 0.00082 37.5 37.9 131 538-672 398-532 (660)
249 PF07079 DUF1347: Protein of u 88.6 45 0.00098 37.1 39.5 423 238-706 16-521 (549)
250 COG3118 Thioredoxin domain-con 88.6 33 0.00073 36.0 17.1 144 198-363 142-286 (304)
251 COG1729 Uncharacterized protei 88.5 7.5 0.00016 40.3 12.5 96 351-447 144-243 (262)
252 KOG0543 FKBP-type peptidyl-pro 88.4 7.1 0.00015 42.6 12.7 97 314-412 257-354 (397)
253 COG4649 Uncharacterized protei 88.0 24 0.00051 34.0 14.2 19 239-257 69-87 (221)
254 PRK15331 chaperone protein Sic 87.9 12 0.00026 35.9 12.5 93 160-257 42-134 (165)
255 COG0457 NrfG FOG: TPR repeat [ 87.9 29 0.00062 34.0 31.0 189 327-517 36-230 (291)
256 PF13512 TPR_18: Tetratricopep 87.7 21 0.00046 33.3 13.8 72 155-227 11-84 (142)
257 COG1747 Uncharacterized N-term 87.6 55 0.0012 37.0 24.1 200 311-517 63-287 (711)
258 PF13170 DUF4003: Protein of u 87.3 45 0.00098 35.7 21.9 136 244-394 78-227 (297)
259 COG3118 Thioredoxin domain-con 87.1 43 0.00093 35.3 17.8 143 273-433 143-286 (304)
260 KOG2114 Vacuolar assembly/sort 86.6 82 0.0018 37.9 25.0 183 152-376 331-517 (933)
261 PF07035 Mic1: Colon cancer-as 86.5 32 0.0007 33.2 15.6 102 175-290 14-115 (167)
262 KOG4555 TPR repeat-containing 86.1 27 0.00059 31.9 12.9 92 497-603 51-146 (175)
263 COG0457 NrfG FOG: TPR repeat [ 85.9 36 0.00079 33.3 30.6 202 314-519 59-266 (291)
264 COG4105 ComL DNA uptake lipopr 85.9 46 0.00099 34.4 20.5 58 460-517 172-232 (254)
265 KOG1258 mRNA processing protei 85.8 75 0.0016 36.7 36.7 169 487-673 295-472 (577)
266 KOG2610 Uncharacterized conser 85.8 13 0.00027 39.5 12.2 153 429-597 113-272 (491)
267 PRK11906 transcriptional regul 85.5 55 0.0012 36.9 17.9 112 503-633 318-433 (458)
268 PF13512 TPR_18: Tetratricopep 85.4 22 0.00048 33.2 12.6 83 191-276 12-94 (142)
269 KOG2610 Uncharacterized conser 85.3 49 0.0011 35.3 16.2 153 276-446 115-274 (491)
270 KOG0276 Vesicle coat complex C 84.7 18 0.00038 41.5 13.6 134 155-340 614-747 (794)
271 COG3629 DnrI DNA-binding trans 84.7 9 0.0002 40.3 10.9 80 190-273 153-236 (280)
272 PF13428 TPR_14: Tetratricopep 84.2 3 6.4E-05 30.2 5.2 29 192-220 3-31 (44)
273 KOG1258 mRNA processing protei 83.1 97 0.0021 35.8 37.9 97 231-342 82-179 (577)
274 PF09613 HrpB1_HrpK: Bacterial 83.1 29 0.00062 33.2 12.5 15 326-340 56-70 (160)
275 KOG1941 Acetylcholine receptor 83.0 25 0.00054 37.8 13.1 208 191-409 44-271 (518)
276 COG3629 DnrI DNA-binding trans 82.7 12 0.00025 39.5 10.7 78 265-358 154-236 (280)
277 PRK11906 transcriptional regul 82.6 63 0.0014 36.4 16.8 161 315-481 252-433 (458)
278 PF10602 RPN7: 26S proteasome 82.1 9.8 0.00021 37.3 9.6 64 266-342 38-101 (177)
279 KOG2396 HAT (Half-A-TPR) repea 82.0 97 0.0021 35.1 31.5 71 150-221 100-171 (568)
280 PF11207 DUF2989: Protein of u 81.7 12 0.00025 37.2 9.7 76 172-248 123-198 (203)
281 KOG0276 Vesicle coat complex C 81.6 11 0.00024 43.0 10.5 23 351-373 668-690 (794)
282 PF09613 HrpB1_HrpK: Bacterial 81.5 27 0.00058 33.4 11.7 110 322-440 18-130 (160)
283 PF04097 Nic96: Nup93/Nic96; 81.1 1.2E+02 0.0027 36.2 20.2 59 269-343 116-181 (613)
284 KOG4570 Uncharacterized conser 80.2 9.1 0.0002 40.2 8.7 105 259-379 59-165 (418)
285 KOG1941 Acetylcholine receptor 79.7 84 0.0018 34.0 15.6 207 157-376 45-273 (518)
286 PF10602 RPN7: 26S proteasome 79.5 23 0.00049 34.8 11.1 101 155-257 36-142 (177)
287 PF13428 TPR_14: Tetratricopep 77.4 7.8 0.00017 27.9 5.5 26 422-447 4-29 (44)
288 PF04184 ST7: ST7 protein; In 76.8 1.4E+02 0.0031 33.9 19.0 25 539-563 297-321 (539)
289 PF13176 TPR_7: Tetratricopept 76.6 5.6 0.00012 27.3 4.3 24 387-410 2-25 (36)
290 KOG1920 IkappaB kinase complex 76.3 2.2E+02 0.0048 35.9 31.3 31 346-377 788-820 (1265)
291 KOG2066 Vacuolar assembly/sort 75.6 1.9E+02 0.0041 34.7 27.8 54 236-292 364-420 (846)
292 COG4649 Uncharacterized protei 75.5 81 0.0018 30.5 16.1 136 154-294 58-197 (221)
293 PF00637 Clathrin: Region in C 75.5 0.073 1.6E-06 50.4 -7.6 54 390-443 13-66 (143)
294 PF13431 TPR_17: Tetratricopep 75.0 3.6 7.7E-05 27.9 2.9 23 226-248 11-33 (34)
295 PF13176 TPR_7: Tetratricopept 74.9 6.4 0.00014 27.0 4.2 27 491-517 1-27 (36)
296 COG4105 ComL DNA uptake lipopr 74.9 1.1E+02 0.0024 31.7 21.5 56 390-446 173-231 (254)
297 PF10345 Cohesin_load: Cohesin 74.0 2E+02 0.0044 34.4 43.5 190 173-375 39-251 (608)
298 PF00515 TPR_1: Tetratricopept 73.4 8.2 0.00018 25.7 4.4 29 490-518 2-30 (34)
299 cd00923 Cyt_c_Oxidase_Va Cytoc 72.8 19 0.00042 31.0 7.2 58 438-496 26-83 (103)
300 TIGR02561 HrpB1_HrpK type III 71.8 52 0.0011 31.0 10.4 53 276-344 22-74 (153)
301 KOG1585 Protein required for f 70.4 1.3E+02 0.0029 30.8 18.5 57 609-666 192-251 (308)
302 PRK09687 putative lyase; Provi 68.7 1.7E+02 0.0036 31.2 29.9 233 188-465 35-277 (280)
303 COG3947 Response regulator con 68.0 1.7E+02 0.0036 31.0 15.5 100 310-411 223-340 (361)
304 PF04097 Nic96: Nup93/Nic96; 67.9 2.7E+02 0.0059 33.4 27.8 43 233-277 116-158 (613)
305 COG3947 Response regulator con 67.5 1.7E+02 0.0037 30.9 17.1 41 172-214 150-190 (361)
306 KOG4570 Uncharacterized conser 67.2 63 0.0014 34.3 10.9 110 304-415 54-166 (418)
307 COG5159 RPN6 26S proteasome re 67.1 1.7E+02 0.0037 30.7 19.0 197 321-517 10-234 (421)
308 PF02284 COX5A: Cytochrome c o 66.8 22 0.00048 31.0 6.4 48 449-496 39-86 (108)
309 TIGR02561 HrpB1_HrpK type III 66.8 1.2E+02 0.0025 28.7 11.9 19 274-292 54-72 (153)
310 PF07719 TPR_2: Tetratricopept 66.4 14 0.00031 24.3 4.4 29 490-518 2-30 (34)
311 COG4785 NlpI Lipoprotein NlpI, 66.3 1.5E+02 0.0033 29.9 14.7 181 204-415 79-268 (297)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 66.1 77 0.0017 27.5 9.4 63 329-392 22-84 (103)
313 PF02284 COX5A: Cytochrome c o 64.6 34 0.00073 29.9 7.1 61 331-392 27-87 (108)
314 PF13374 TPR_10: Tetratricopep 63.3 17 0.00036 25.2 4.6 30 489-518 2-31 (42)
315 PF13431 TPR_17: Tetratricopep 63.0 11 0.00024 25.5 3.3 31 479-509 3-33 (34)
316 PF13374 TPR_10: Tetratricopep 62.3 18 0.00039 25.1 4.6 27 385-411 3-29 (42)
317 PF06552 TOM20_plant: Plant sp 61.2 1.4E+02 0.003 29.3 11.3 62 488-570 68-140 (186)
318 PF13762 MNE1: Mitochondrial s 60.6 1.3E+02 0.0028 28.3 10.9 95 259-363 32-129 (145)
319 PF02259 FAT: FAT domain; Int 60.5 2.5E+02 0.0055 30.4 23.9 66 347-412 144-212 (352)
320 COG2976 Uncharacterized protei 59.9 1.9E+02 0.0041 28.8 13.7 20 324-343 169-188 (207)
321 PF00515 TPR_1: Tetratricopept 59.2 24 0.00053 23.3 4.6 25 387-411 4-28 (34)
322 PRK09687 putative lyase; Provi 55.9 2.8E+02 0.006 29.5 29.6 202 313-548 67-278 (280)
323 KOG2066 Vacuolar assembly/sort 55.7 4.5E+02 0.0096 31.8 32.6 78 197-281 363-440 (846)
324 COG4941 Predicted RNA polymera 53.2 3.3E+02 0.0071 29.5 17.3 124 164-293 265-394 (415)
325 COG4455 ImpE Protein of avirul 52.8 75 0.0016 32.0 8.2 76 159-236 5-80 (273)
326 PF13929 mRNA_stabil: mRNA sta 52.0 3.2E+02 0.0069 29.0 16.8 58 312-369 200-258 (292)
327 PF11207 DUF2989: Protein of u 51.1 1.6E+02 0.0035 29.4 10.3 73 401-474 123-197 (203)
328 PF07719 TPR_2: Tetratricopept 50.8 40 0.00087 22.0 4.6 23 389-411 6-28 (34)
329 PF13181 TPR_8: Tetratricopept 50.6 28 0.0006 23.0 3.7 29 490-518 2-30 (34)
330 KOG0403 Neoplastic transformat 50.1 4.2E+02 0.009 29.8 21.8 346 232-619 218-586 (645)
331 COG2909 MalT ATP-dependent tra 49.6 5.9E+02 0.013 31.4 29.5 227 274-514 425-684 (894)
332 COG4455 ImpE Protein of avirul 48.0 1E+02 0.0023 31.0 8.3 59 232-292 5-63 (273)
333 PF08424 NRDE-2: NRDE-2, neces 46.5 4.2E+02 0.009 28.7 16.1 119 171-294 47-184 (321)
334 KOG4648 Uncharacterized conser 46.3 79 0.0017 33.9 7.7 44 429-475 107-151 (536)
335 COG1747 Uncharacterized N-term 45.9 5.2E+02 0.011 29.7 25.2 166 381-566 63-234 (711)
336 TIGR02508 type_III_yscG type I 44.8 2.2E+02 0.0047 25.0 8.8 86 232-357 25-110 (115)
337 PF11848 DUF3368: Domain of un 44.4 64 0.0014 23.9 5.0 38 614-651 9-46 (48)
338 PF13174 TPR_6: Tetratricopept 44.3 41 0.00088 21.8 3.7 27 493-519 4-30 (33)
339 PHA02875 ankyrin repeat protei 44.3 3.1E+02 0.0067 30.7 13.3 210 324-573 9-231 (413)
340 KOG1586 Protein required for f 43.6 3.8E+02 0.0083 27.5 20.2 57 359-415 164-226 (288)
341 PF00637 Clathrin: Region in C 43.1 9.4 0.0002 35.8 0.5 53 321-373 14-66 (143)
342 PF13174 TPR_6: Tetratricopept 42.6 41 0.00089 21.7 3.6 25 233-257 5-29 (33)
343 KOG1464 COP9 signalosome, subu 42.0 4.3E+02 0.0092 27.6 17.6 256 202-503 39-318 (440)
344 PF02259 FAT: FAT domain; Int 41.6 4.8E+02 0.011 28.1 24.6 64 572-635 146-212 (352)
345 PF07721 TPR_4: Tetratricopept 41.5 34 0.00074 21.4 2.8 19 233-251 6-24 (26)
346 PF13181 TPR_8: Tetratricopept 40.8 70 0.0015 20.9 4.5 25 387-411 4-28 (34)
347 KOG1550 Extracellular protein 40.8 6.7E+02 0.015 29.6 25.4 185 244-447 228-425 (552)
348 PF13762 MNE1: Mitochondrial s 40.1 2.6E+02 0.0057 26.3 9.5 87 491-585 41-128 (145)
349 PRK11619 lytic murein transgly 39.0 7.7E+02 0.017 29.7 39.2 118 397-517 254-374 (644)
350 PF12862 Apc5: Anaphase-promot 39.0 1.7E+02 0.0037 25.0 7.8 23 234-256 47-69 (94)
351 cd08819 CARD_MDA5_2 Caspase ac 38.7 2.2E+02 0.0048 24.2 7.7 68 173-249 20-87 (88)
352 PF10579 Rapsyn_N: Rapsyn N-te 38.0 90 0.0019 26.0 5.2 48 654-702 18-65 (80)
353 PF07163 Pex26: Pex26 protein; 37.9 3.6E+02 0.0077 28.5 10.7 89 542-630 88-181 (309)
354 PF06552 TOM20_plant: Plant sp 37.4 2.5E+02 0.0055 27.5 9.1 76 206-294 51-137 (186)
355 KOG4234 TPR repeat-containing 36.2 3.2E+02 0.0069 27.3 9.5 23 496-518 175-197 (271)
356 KOG4077 Cytochrome c oxidase, 36.1 1.8E+02 0.0039 26.6 7.2 54 442-496 72-125 (149)
357 KOG4648 Uncharacterized conser 36.0 2.1E+02 0.0046 30.8 8.9 92 464-571 106-197 (536)
358 KOG1550 Extracellular protein 35.8 8E+02 0.017 29.0 25.6 50 470-519 343-394 (552)
359 COG2909 MalT ATP-dependent tra 35.7 9.3E+02 0.02 29.7 27.9 229 325-562 426-684 (894)
360 TIGR03504 FimV_Cterm FimV C-te 35.5 64 0.0014 23.5 3.7 25 390-414 5-29 (44)
361 PRK10941 hypothetical protein; 35.4 3.9E+02 0.0085 28.2 11.1 78 193-274 184-261 (269)
362 KOG2582 COP9 signalosome, subu 34.9 6.5E+02 0.014 27.6 16.1 135 188-342 73-211 (422)
363 PF13934 ELYS: Nuclear pore co 33.5 5.4E+02 0.012 26.3 12.0 105 157-276 78-184 (226)
364 TIGR03504 FimV_Cterm FimV C-te 33.1 1E+02 0.0023 22.4 4.4 24 355-378 5-28 (44)
365 COG5108 RPO41 Mitochondrial DN 33.0 1.9E+02 0.0042 33.9 8.6 48 424-471 33-81 (1117)
366 KOG1586 Protein required for f 32.9 5.6E+02 0.012 26.4 21.9 21 583-603 165-185 (288)
367 smart00540 LEM in nuclear memb 32.4 34 0.00073 24.9 1.8 33 2-36 9-41 (44)
368 PF07163 Pex26: Pex26 protein; 32.2 4.1E+02 0.009 28.0 10.1 91 193-287 86-181 (309)
369 PF07575 Nucleopor_Nup85: Nup8 32.2 9.1E+02 0.02 28.6 18.4 63 454-517 404-466 (566)
370 PF10579 Rapsyn_N: Rapsyn N-te 32.2 1.2E+02 0.0026 25.2 5.1 16 424-439 48-63 (80)
371 KOG2063 Vacuolar assembly/sort 32.1 1.1E+03 0.024 29.4 17.6 251 317-614 507-776 (877)
372 PF11848 DUF3368: Domain of un 32.0 1.3E+02 0.0029 22.2 5.0 38 162-199 9-46 (48)
373 COG4785 NlpI Lipoprotein NlpI, 32.0 5.6E+02 0.012 26.0 16.9 187 363-565 79-265 (297)
374 PF13934 ELYS: Nuclear pore co 31.8 5.7E+02 0.012 26.1 11.5 106 386-502 78-185 (226)
375 COG2976 Uncharacterized protei 31.7 5.3E+02 0.012 25.7 14.3 86 324-414 99-189 (207)
376 KOG4077 Cytochrome c oxidase, 31.4 2.9E+02 0.0063 25.3 7.7 48 331-378 66-113 (149)
377 PRK10941 hypothetical protein; 31.2 4.8E+02 0.01 27.5 10.9 79 157-238 183-261 (269)
378 COG5108 RPO41 Mitochondrial DN 31.1 2.9E+02 0.0064 32.5 9.6 93 195-292 33-131 (1117)
379 PF13929 mRNA_stabil: mRNA sta 30.9 6.7E+02 0.015 26.6 20.9 115 398-512 142-261 (292)
380 PHA02875 ankyrin repeat protei 30.8 7.3E+02 0.016 27.7 13.5 70 178-252 18-89 (413)
381 KOG2471 TPR repeat-containing 30.1 8.8E+02 0.019 27.8 13.0 106 547-654 250-381 (696)
382 KOG2908 26S proteasome regulat 30.0 5.2E+02 0.011 28.0 10.6 86 542-627 80-177 (380)
383 smart00028 TPR Tetratricopepti 29.9 1E+02 0.0022 18.6 3.9 28 491-518 3-30 (34)
384 PF11846 DUF3366: Domain of un 29.5 2.3E+02 0.0051 27.9 8.1 52 467-518 120-173 (193)
385 cd08819 CARD_MDA5_2 Caspase ac 29.4 3E+02 0.0064 23.5 7.1 64 368-437 21-84 (88)
386 KOG4234 TPR repeat-containing 29.3 6E+02 0.013 25.5 11.2 88 394-484 105-197 (271)
387 PF11846 DUF3366: Domain of un 29.1 1.9E+02 0.004 28.6 7.3 54 240-293 120-173 (193)
388 KOG4507 Uncharacterized conser 27.7 3.4E+02 0.0074 31.5 9.3 89 326-415 619-707 (886)
389 KOG2168 Cullins [Cell cycle co 27.5 1.2E+03 0.027 28.6 19.3 392 196-644 331-744 (835)
390 smart00386 HAT HAT (Half-A-TPR 27.4 1.2E+02 0.0026 19.2 3.9 29 469-497 1-29 (33)
391 PF08311 Mad3_BUB1_I: Mad3/BUB 27.1 3.7E+02 0.008 24.5 8.3 43 555-597 81-124 (126)
392 PF14853 Fis1_TPR_C: Fis1 C-te 27.0 1.6E+02 0.0035 22.4 4.8 36 613-650 7-42 (53)
393 KOG4642 Chaperone-dependent E3 26.1 7.5E+02 0.016 25.6 10.7 118 499-633 20-143 (284)
394 KOG4642 Chaperone-dependent E3 25.6 7.6E+02 0.017 25.5 11.0 113 550-666 23-141 (284)
395 PF11663 Toxin_YhaV: Toxin wit 25.4 61 0.0013 29.9 2.6 29 586-616 109-137 (140)
396 PF02847 MA3: MA3 domain; Int 25.3 3.1E+02 0.0067 24.1 7.4 61 612-674 7-69 (113)
397 PF04190 DUF410: Protein of un 25.0 8.1E+02 0.017 25.6 17.8 94 159-254 14-116 (260)
398 PF10475 DUF2450: Protein of u 24.9 4.6E+02 0.01 27.9 9.8 53 195-256 103-155 (291)
399 PF10281 Ish1: Putative stress 24.4 84 0.0018 21.9 2.7 18 2-19 7-24 (38)
400 COG0735 Fur Fe2+/Zn2+ uptake r 24.3 3.4E+02 0.0073 25.6 7.6 61 336-397 8-68 (145)
401 KOG3807 Predicted membrane pro 24.2 9.2E+02 0.02 26.0 17.9 109 361-483 228-339 (556)
402 KOG0686 COP9 signalosome, subu 24.1 1E+03 0.023 26.6 15.7 160 316-484 152-333 (466)
403 COG5625 Predicted transcriptio 23.8 1.5E+02 0.0033 25.6 4.5 34 4-38 66-106 (113)
404 PF09670 Cas_Cas02710: CRISPR- 23.8 7.7E+02 0.017 27.5 11.6 54 324-378 141-198 (379)
405 KOG2659 LisH motif-containing 23.8 7.2E+02 0.016 25.4 10.0 100 533-634 22-130 (228)
406 PF11663 Toxin_YhaV: Toxin wit 23.5 73 0.0016 29.4 2.7 22 328-349 109-130 (140)
407 TIGR02710 CRISPR-associated pr 23.2 7.4E+02 0.016 27.5 10.9 24 679-702 245-268 (380)
408 PF11838 ERAP1_C: ERAP1-like C 23.1 9.3E+02 0.02 25.6 18.0 199 235-444 45-262 (324)
409 PRK10564 maltose regulon perip 22.5 1.4E+02 0.003 31.7 5.0 45 310-354 252-297 (303)
410 KOG0991 Replication factor C, 22.4 8.7E+02 0.019 25.0 13.7 114 238-359 169-282 (333)
411 PF09986 DUF2225: Uncharacteri 22.2 8.2E+02 0.018 24.7 11.7 68 192-259 120-196 (214)
412 PF14689 SPOB_a: Sensor_kinase 22.1 3.1E+02 0.0067 21.5 5.8 22 389-410 28-49 (62)
413 PF09670 Cas_Cas02710: CRISPR- 21.8 1.1E+03 0.024 26.1 13.2 58 160-218 136-197 (379)
414 PF14689 SPOB_a: Sensor_kinase 21.6 1.9E+02 0.0041 22.7 4.5 22 319-340 28-49 (62)
415 KOG4521 Nuclear pore complex, 21.6 1.8E+03 0.039 28.4 16.1 83 490-589 984-1071(1480)
416 COG0735 Fur Fe2+/Zn2+ uptake r 21.5 3.6E+02 0.0078 25.3 7.2 62 559-621 8-69 (145)
417 COG2178 Predicted RNA-binding 21.4 8.2E+02 0.018 24.4 10.7 24 269-292 34-57 (204)
418 KOG0686 COP9 signalosome, subu 21.0 1.2E+03 0.026 26.1 14.7 182 457-650 152-352 (466)
419 PF11768 DUF3312: Protein of u 20.9 8.2E+02 0.018 28.5 10.9 23 424-446 413-435 (545)
420 PRK08691 DNA polymerase III su 20.8 5.8E+02 0.012 30.9 10.1 97 245-347 181-278 (709)
421 PF15604 Toxin_43: Putative to 20.4 6.9E+02 0.015 23.8 8.6 74 5-85 31-105 (152)
422 PF12862 Apc5: Anaphase-promot 20.2 5.5E+02 0.012 21.8 7.9 17 430-446 52-68 (94)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-67 Score=651.42 Aligned_cols=589 Identities=14% Similarity=0.104 Sum_probs=536.6
Q ss_pred hhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 128 LDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207 (880)
Q Consensus 128 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 207 (880)
-.+++..|..+|+.|. .++..+|+.++..+++.|++++|+.+|+.|...|+.||..||+.++++|+..+++.
T Consensus 133 ~~g~~~~A~~~f~~m~--------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 133 RFGELVHAWYVFGKMP--------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred hCCChHHHHHHHhcCC--------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 3467788888997753 35778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287 (880)
Q Consensus 208 ~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~ 287 (880)
.+.+++..+.+.+. .+|+.+||+||.+|+++|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|
T Consensus 205 ~~~~~~~~~~~~g~---~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 205 RGREVHAHVVRFGF---ELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred hHHHHHHHHHHcCC---CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998654 58999999999999999999999999999975 69999999999999999999999999
Q ss_pred HHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002795 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL 367 (880)
Q Consensus 288 ~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 367 (880)
.+|...| +.||.+||+++|.+|++.|+.+.|.+++..|.+.|+.||..+|+++|.+|++.|++++
T Consensus 277 ~~M~~~g---------------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 277 FTMRELS---------------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHHHcC---------------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 368 VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 368 A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999964 689999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 527 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~ 527 (880)
.|..|+..+|++|+.+|+++|++++|.++|+.|.+ +|..+||+||.+|++.|+.++|+.+|++|.. +
T Consensus 418 -~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-------- 484 (857)
T PLN03077 418 -KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-------- 484 (857)
T ss_pred -hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C--------
Confidence 89999999999999999999999999999999987 8999999999999999999999999999986 3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002795 528 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP 607 (880)
Q Consensus 528 ~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~ 607 (880)
+.||..||+++|.+|++.|+++.+.+++..|.+.|+.+|..++++||++|+++|++++|..+|+.+ .||.
T Consensus 485 -----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 485 -----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred -----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 789999999999999999999999999999999999999999999999999999999999999987 5899
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhHHHHHHH
Q 002795 608 LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITVSNLSRA 686 (880)
Q Consensus 608 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~-~~~~~p~~~~~~~~~~~ 686 (880)
.+||+||.+|+++|+.++|+++|++|...|+.||..||+.+|.+|.+.|.+++|.++|+.|. +.|+.|+. .++..+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~---~~y~~l 631 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL---KHYACV 631 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 67888754 455667
Q ss_pred HHHHHhccchhhhhhhccccccccccccccchhhhhhcccccCCCchhhhHhh---hcccCCCCCCCCc-cCCccCcccc
Q 002795 687 LHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMF---ENADLGADPLPQK-TDVAVDIDSI 762 (880)
Q Consensus 687 ~~~~~~~g~~~ea~~~~~~~~~~v~~~~l~~~~~~f~~~~~~~~~~~~~~i~~---~G~~~~Al~lf~~-~~~~Pd~~t~ 762 (880)
++.|++.|++++|.+++..+ ...++...|++++.+ ||+.+.|....++ ..+.|+..++
T Consensus 632 v~~l~r~G~~~eA~~~~~~m------------------~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM------------------PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC------------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 99999999999997765441 135677778888887 7777766666666 6677776654
Q ss_pred ccc---------------ccccccCchhhhhhhhhcccccCCCCCccc
Q 002795 763 NHS---------------SLSRQADADTEMFSKALSYIHSNDRPSNLC 795 (880)
Q Consensus 763 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (880)
.-. ++.......++.+.+.++||+.++.++.|-
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 221 111223455566677889999888777653
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-66 Score=639.14 Aligned_cols=542 Identities=14% Similarity=0.107 Sum_probs=516.1
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 151 ~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
..++...++.++..+++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+.++.|.+++..+.+.+. .++..+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~ 123 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP---SLGVRL 123 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---CCCchH
Confidence 35567789999999999999999999999999999999999999999999999999999999999988665 378899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~ 310 (880)
+|+|+.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|...| .
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g---------------~ 183 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG---------------V 183 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------C
Confidence 99999999999999999999999975 799999999999999999999999999999988 9
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
.||.+||+++|.+|+..+++..+.+++..|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.. +|..+||+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~l 259 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAM 259 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+ .|..||..+|++|+.+|+++|+
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
+++|.++|+.|.. ||..+||+||.+|++.|++++|+++|++|...| +.||..||+++|.+|++.
T Consensus 339 ~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-------------~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 339 WGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDN-------------VSPDEITIASVLSACACL 402 (857)
T ss_pred HHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------CCCCceeHHHHHHHHhcc
Confidence 9999999999986 899999999999999999999999999999987 899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002795 551 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALI 630 (880)
Q Consensus 551 ~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 630 (880)
|+++.|.+++..|.+.|+.|+..+|++||.+|+++|++++|.++|+.|.+ +|..+|+.+|.+|++.|+.++|+.+|
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 67889999999999999999999999
Q ss_pred HHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcccccccc
Q 002795 631 NAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAI 710 (880)
Q Consensus 631 ~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v 710 (880)
++|.. ++.||..||.++|.+|.+.|.++.+.+++..+.+.|+.++....+. ++++|+++|++++|.++
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na---Li~~y~k~G~~~~A~~~-------- 546 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA---LLDLYVRCGRMNYAWNQ-------- 546 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH---HHHHHHHcCCHHHHHHH--------
Confidence 99986 5999999999999999999999999999999999999977766654 59999999999999554
Q ss_pred ccccccchhhhhhcccccCCCchhhhHhh---hcccCCCCCCCCc---cCCccCcccccc
Q 002795 711 DISPLHGIHEAFDVKETENVPSSSASMMF---ENADLGADPLPQK---TDVAVDIDSINH 764 (880)
Q Consensus 711 ~~~~l~~~~~~f~~~~~~~~~~~~~~i~~---~G~~~~Al~lf~~---~~~~Pd~~t~~~ 764 (880)
|+.+ .+++++||+||.+ +|+.++|+.+|++ .|+.||.+||+.
T Consensus 547 -----------f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 547 -----------FNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred -----------HHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 4445 7899999999999 9999999999998 899999999954
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-63 Score=602.13 Aligned_cols=513 Identities=17% Similarity=0.218 Sum_probs=474.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGL-MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR 228 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~ 228 (880)
....+...|..++..+++.|++++|+++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. ||.
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~ 437 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTL 437 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCH
Confidence 4456678899999999999999999999999999996 47788889999999999999999999998732 899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 229 ~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
.+|+.||.+|++.|++++|.++|+.|.+. |+.||..+|++||.+|++.|++++|.++|++|.+.|
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-------------- 502 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-------------- 502 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--------------
Confidence 99999999999999999999999999997 999999999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCccHHH
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK--SGEAIGALT 386 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~--~g~~~d~~~ 386 (880)
+.||.++|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+
T Consensus 503 -v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 503 -VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred -CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 578999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 002795 387 YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 466 (880)
Q Consensus 387 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~ 466 (880)
|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.. .|+.||..+|+.++.+|+
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred hCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHH
Q 002795 467 DGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 545 (880)
Q Consensus 467 ~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~ 545 (880)
+.|++++|.++|+.|.+ ++.||..+|++||.+|+++|++++|.++|++|...| +.||..||++||.
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-------------~~PdvvtyN~LI~ 727 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-------------LRPTVSTMNALIT 727 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHH
Confidence 99999999999999998 799999999999999999999999999999999987 8999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----h-
Q 002795 546 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----Q- 620 (880)
Q Consensus 546 a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~- 620 (880)
+|++.|++++|.++|++|...|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.||..+|++++..|.+ .
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865432 1
Q ss_pred ------------------CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHH
Q 002795 621 ------------------SNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSN 682 (880)
Q Consensus 621 ------------------g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~ 682 (880)
+..++|+.+|++|...|+.||..||+.+|.++...+....+..+++.|...+..|+.. +
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~---~ 884 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS---N 884 (1060)
T ss_pred hhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh---h
Confidence 1246899999999999999999999999977777788888888888776666554444 4
Q ss_pred HHHHHHHHHhccchhhhhhhcc
Q 002795 683 LSRALHALCRSEKERDLSSSAH 704 (880)
Q Consensus 683 ~~~~~~~~~~~g~~~ea~~~~~ 704 (880)
+..+++++++. .++|..++.
T Consensus 885 y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 885 LSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred hHHHHHhhccC--hHHHHHHHH
Confidence 45558887532 245655543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-63 Score=597.69 Aligned_cols=509 Identities=16% Similarity=0.221 Sum_probs=477.0
Q ss_pred hhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 128 LDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207 (880)
Q Consensus 128 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 207 (880)
-.+++..|..+|+.|... ....++...+..++..+++.|.+++|+.+|+.|.. |+..+|+.++.+|++.|+++
T Consensus 382 r~G~l~eAl~Lfd~M~~~---gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKR---GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HCcCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHH
Confidence 356788899999887652 12335666778889999999999999999999974 89999999999999999999
Q ss_pred HHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287 (880)
Q Consensus 208 ~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~ 287 (880)
.|.++|+.|.+.+. .||..+||.||.+|++.|++++|.++|++|.+. |+.||..||++||.+|++.|++++|.++|
T Consensus 455 ~A~~lf~~M~~~Gl---~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 455 GALRVLRLVQEAGL---KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999988654 599999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCh
Q 002795 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK--SGLKPSAATYGLAMEVMLQSGKY 365 (880)
Q Consensus 288 ~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~ 365 (880)
+.|...| ..||.++||+||.+|++.|++++|.++|.+|.. .|+.||..||+++|.+|++.|++
T Consensus 531 ~~M~~~G---------------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 531 GIMRSKN---------------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHHcC---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999988 999999999999999999999999999999986 68999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 366 DLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 366 ~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
++|.++|+.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|..+|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 002795 446 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 524 (880)
Q Consensus 446 ~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~ 524 (880)
.+ .+..|+..+|++||.+|+++|++++|.++|+.|.+ ++.||..+||+||.+|++.|++++|.++|++|...|
T Consensus 676 ~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G----- 749 (1060)
T PLN03218 676 RK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG----- 749 (1060)
T ss_pred HH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----
Confidence 98 89999999999999999999999999999999988 699999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcC--------------
Q 002795 525 FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS----RAG-------------- 586 (880)
Q Consensus 525 ~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~----~~G-------------- 586 (880)
+.||..||+++|.+|++.|+++.|.++|.+|.+.|+.||..+|++++..|. +++
T Consensus 750 --------i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~ 821 (1060)
T PLN03218 750 --------LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRP 821 (1060)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 899999999999999999999999999999999999999999999997643 222
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHH
Q 002795 587 -----KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKL 661 (880)
Q Consensus 587 -----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a 661 (880)
..+.|..+|++|.+.|+.||..+|+.++.+++..+..+.+..+++.|...+..|+..+|++++.+|.+. .++|
T Consensus 822 ~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A 899 (1060)
T PLN03218 822 QIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRA 899 (1060)
T ss_pred ccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHH
Confidence 236799999999999999999999999988888899999999999999889999999999999998543 4689
Q ss_pred HHHHHHHHhCCCCCChh
Q 002795 662 EKLLNALCNCNAASSEI 678 (880)
Q Consensus 662 ~~l~~~~~~~~~~p~~~ 678 (880)
..++++|.+.|+.|+..
T Consensus 900 ~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 900 FSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHcCCCCCcc
Confidence 99999999999997764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-60 Score=571.98 Aligned_cols=467 Identities=13% Similarity=0.169 Sum_probs=322.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~ 267 (880)
.+..+++.+|..|.+.|++++|.++|++|...++ ..||..+|+.++.+|++.++++.|.+++..|.+. |+.||..+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~--~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~ 161 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCP--FTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMM 161 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHH
Confidence 3445566666666666666666666666654321 2366667777777777777777777777777665 666777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
|.|+.+|++.|++++|.++|++| ..||.++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m-------------------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEM-------------------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcC-------------------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 77777777777777777777666 44667777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 427 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~ 427 (880)
+..||+.++.+|++.|..+.+.+++..+.+.|+.+|..+||+||.+|+++|++++|.++|++|.. +|..+||+||.
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~ 298 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLA 298 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777776643 35566777777
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHH
Q 002795 428 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFS 506 (880)
Q Consensus 428 ~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~ 506 (880)
+|++.|++++|+.+|++|.. .|+.||..||++++.+|++.|.++.|.+++..|.+ ++.||..+|++||++|+++|+++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 77777777777777777766 66777777777777777777777777777777766 56677777777777777777777
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002795 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586 (880)
Q Consensus 507 ~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G 586 (880)
+|.++|++|.+ ||..||++||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|
T Consensus 378 ~A~~vf~~m~~-----------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 378 DARNVFDRMPR-----------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHhCCC-----------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 77777776633 6667777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHH
Q 002795 587 KCHLLEHAFDSLLE-AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLL 665 (880)
Q Consensus 587 ~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~ 665 (880)
.+++|.++|+.|.+ .|+.|+..+|++|+..|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..++
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 77777777777764 467777777777777777777777777777666 56677777777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccc
Q 002795 666 NALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHF 705 (880)
Q Consensus 666 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~ 705 (880)
+++.+.++ +. ..++..+++.|++.|++++|.+++..
T Consensus 518 ~~l~~~~p--~~--~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 518 EKLYGMGP--EK--LNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHhCCCC--CC--CcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 76665443 22 22344456677777777777665544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6e-58 Score=551.78 Aligned_cols=474 Identities=14% Similarity=0.134 Sum_probs=451.8
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSG-LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 152 ~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
+.+...++.++..+.+.|++++|+.+|+.|...+ +.|+..+|+.++.+|++.++++.|.+++..|.+.+ ..||..+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG---FEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCcchHH
Confidence 3445578999999999999999999999999864 78999999999999999999999999999998865 4589999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~ 310 (880)
||.|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.| .
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~ 220 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG---------------S 220 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---------------C
Confidence 99999999999999999999999975 799999999999999999999999999999988 9
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
.||..+|+.++.+|++.|....+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|+.|.. +|..+||+|
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~l 296 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSM 296 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 589999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+ .+..||..+|++|+.+|+++|+
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
+++|.++|+.|.+ ||..+||+||.+|++.|+.++|+++|++|.+.| +.||..||+++|.+|++.
T Consensus 376 ~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-------------~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 376 MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-------------VAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHHHhcC
Confidence 9999999999987 899999999999999999999999999999987 899999999999999999
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 002795 551 HQWEYFEYVYKGMAL-SGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 629 (880)
Q Consensus 551 ~~~~~A~~l~~~m~~-~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 629 (880)
|..++|.++|+.|.+ .|+.|+..+|+.++++|+++|++++|.++|+.| ++.|+..+|++++.+|..+|+++.|..+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999986 699999999999999999999999999998765 6789999999999999999999999999
Q ss_pred HHHhhhCCCccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 630 INAMAYAPFHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 630 ~~~m~~~~~~p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
++++. ++.|+ ..+|..++..|.+.|+++.|.++++.|.+.|+.
T Consensus 517 ~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 517 AEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99997 45664 568999999999999999999999999999986
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-27 Score=299.00 Aligned_cols=522 Identities=12% Similarity=0.002 Sum_probs=346.7
Q ss_pred hccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002795 129 DDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQ 208 (880)
Q Consensus 129 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 208 (880)
.++.+.|...|..++.. .......+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 274 ~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 274 KKNYEDARETLQDALKS-----APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred hcCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHH
Confidence 45556666666554431 12223344445555666777777777777766654 4455666666677777777777
Q ss_pred HHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002795 209 AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288 (880)
Q Consensus 209 A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~ 288 (880)
|...++.++...+ .+...++.+...+.+.|++++|..+|+++.+. .+.+...|..+...+...|++++|...|.
T Consensus 348 A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 348 AIATLSPALGLDP----DDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 7777777665432 45566777777777777777777777777653 23345566666667777777777777777
Q ss_pred HHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002795 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLV 368 (880)
Q Consensus 289 ~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A 368 (880)
.+.... +.+...+..++..+.+.|++++|..++..+.... +++..++..+..++...|++++|
T Consensus 422 ~a~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 422 TAAQLD----------------PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHHhhC----------------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHH
Confidence 776542 2233445556666777777777777777776542 34566777777777777777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002795 369 HEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 448 (880)
Q Consensus 369 ~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~ 448 (880)
..+|.++.+.. +.+...+..+...+...|++++|.+.|+++...++. +..++..+...+.+.|+.++|..++.++...
T Consensus 485 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777654 344566667777777777777777777777766533 4556677777777777777777777777651
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 002795 449 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528 (880)
Q Consensus 449 ~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~ 528 (880)
...+...+..+...|.+.|++++|..+++.+.+..+.+..+|..+..+|.+.|++++|...|+++....
T Consensus 563 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------- 631 (899)
T TIGR02917 563 --NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--------- 631 (899)
T ss_pred --CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence 223344566677777777777777777777776666677777777777777777777777777777643
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002795 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608 (880)
Q Consensus 529 ~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~ 608 (880)
..+...+..+..++...|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+.+.+ .++..
T Consensus 632 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 704 (899)
T TIGR02917 632 -----PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAAL 704 (899)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChH
Confidence 1245567777777777777777777777776532 2236667777777777777777777777776654 34555
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 002795 609 FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALH 688 (880)
Q Consensus 609 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~ 688 (880)
.+..+...+...|++++|+..++++... .|+..++..+...+...|+.+.|.+.++.+.+..+. ++ ..+..+..
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--~~--~~~~~la~ 778 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN--DA--VLRTALAE 778 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH--HHHHHHHH
Confidence 6666667777777777777777777643 355566666666777777777777777777776543 22 33444566
Q ss_pred HHHhccchhhhhhhccc
Q 002795 689 ALCRSEKERDLSSSAHF 705 (880)
Q Consensus 689 ~~~~~g~~~ea~~~~~~ 705 (880)
.+...|++++|.+.+..
T Consensus 779 ~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHCcCHHHHHHHHHH
Confidence 67777777777665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.2e-26 Score=290.01 Aligned_cols=518 Identities=11% Similarity=0.021 Sum_probs=368.2
Q ss_pred ccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 130 DDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQA 209 (880)
Q Consensus 130 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 209 (880)
++.+.|...|..+.. ..+.+...+..+...+...|++++|...++.+.+.. +........++..+.+.|++++|
T Consensus 377 g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 377 GDFEKAAEYLAKATE-----LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred CCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHH
Confidence 455555555554433 122344455555555666666666666666665544 22333444455566666666666
Q ss_pred HHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 210 MSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289 (880)
Q Consensus 210 ~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~ 289 (880)
..+++.+....+ .+..+|+.+...|...|++++|...|+++.+. .+.+...+..+...+...|++++|...|+.
T Consensus 451 ~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 451 LAAAKKLEKKQP----DNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHhCC----CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666654322 34556666666666666666666666666652 233445556666666666666666666666
Q ss_pred HHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002795 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369 (880)
Q Consensus 290 m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 369 (880)
+... .+.+..++..+...+.+.|+.++|..+|.++...+ +.+...+..+...+...|++++|.
T Consensus 525 ~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 525 VLTI----------------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHh----------------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 6654 34567778888888888888888888888887654 335566777888888888888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002795 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 449 (880)
Q Consensus 370 ~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 449 (880)
.+++.+.+.. +.+..+|..+...|...|++++|...|+.+.+.+.. +...+..+..+|...|++++|...|+++..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 663 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALE-- 663 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 8888887754 556778888888888888888888888888776532 455677788888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 002795 450 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529 (880)
Q Consensus 450 ~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~ 529 (880)
..+.+..++..+...+...|++++|..+++.+.+..+.+...+..+...+.+.|++++|...|..+...+
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---------- 733 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---------- 733 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----------
Confidence 2223456778888888888888888888888887667777888888888888888888888888888743
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609 (880)
Q Consensus 530 ~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~ 609 (880)
|+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.+.. +++...
T Consensus 734 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 806 (899)
T TIGR02917 734 -----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV 806 (899)
T ss_pred -----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 666777788888888888888888888887643 4457778888888888899999999998888764 346677
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 002795 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHI-TERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALH 688 (880)
Q Consensus 610 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~ 688 (880)
++.+...+...|+ .+|+.+++++... .| +..++..+-..+...|+.+.|...++++.+.++. +. ..+..+..
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~---~~~~~l~~ 879 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA---AIRYHLAL 879 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch---HHHHHHHH
Confidence 8888888888888 7788888888643 23 3445556666678889999999999999988754 22 23334578
Q ss_pred HHHhccchhhhhhhcc
Q 002795 689 ALCRSEKERDLSSSAH 704 (880)
Q Consensus 689 ~~~~~g~~~ea~~~~~ 704 (880)
.+++.|+.++|.+.+.
T Consensus 880 ~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 880 ALLATGRKAEARKELD 895 (899)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 8889999999877653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.8e-18 Score=219.38 Aligned_cols=582 Identities=11% Similarity=0.021 Sum_probs=358.2
Q ss_pred hHHhHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH--
Q 002795 116 LKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQM-- 193 (880)
Q Consensus 116 l~e~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~-- 193 (880)
....++..-.|...++.+.+...+.++.. ....++..+..++..+.+.|+.++|...++.+.+.. +.+....
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~-----~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~ 101 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLEL-----IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSS 101 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHc-----cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHH
Confidence 44466666668888999999999988666 455678999999999999999999999999999876 4443332
Q ss_pred --------------HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002795 194 --------------LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-VYTKLLAILGKAGRPHEALRIFNLMLEDC 258 (880)
Q Consensus 194 --------------~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~-~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~ 258 (880)
..+...+...|++++|.+.|+.+++..+ ++.. ....+.......|+.++|++.|+++.+.
T Consensus 102 ~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p----~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~- 176 (1157)
T PRK11447 102 RTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP----PELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD- 176 (1157)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC----CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh-
Confidence 3344568889999999999999986543 2321 1111112223459999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchh---Hhhh----------------h---hhcCCCC-------
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKR---IKNM----------------H---RKNWDPV------- 309 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~---l~~m----------------~---~~~f~~~------- 309 (880)
.+-+...+..+...+...|+.++|+..++++....... .... + ...+...
T Consensus 177 -~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 177 -YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 34467778888999999999999999999986643110 0000 0 0111100
Q ss_pred ----------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002795 310 ----------LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG 379 (880)
Q Consensus 310 ----------~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g 379 (880)
..|+... ......+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...|++..+..
T Consensus 256 ~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0111110 122345778899999999999998753 2267888889999999999999999999998865
Q ss_pred CCc-cHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002795 380 EAI-GALTYK------------VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 380 ~~~-d~~~~~------------~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~ 446 (880)
... ....|. .+...+.+.|++++|...|+++...... +...+..+...+...|++++|+..|++..
T Consensus 334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 221 112222 2245677899999999999999988653 45667778999999999999999999998
Q ss_pred hcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 447 SLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCE---------PNIGTVNAMLKVYSRNDMFSKAKELFEETT 516 (880)
Q Consensus 447 ~~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~---------pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 516 (880)
+ ..|+ ...+..+...|. .+..++|..+++.+....+ -....+..+...+...|++++|+..|++.+
T Consensus 413 ~---~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 413 R---MDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred H---hCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7 2333 334444444432 2344555555443322100 001223344455555555555555555555
Q ss_pred HcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH-----------------
Q 002795 517 RANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAW----------------- 577 (880)
Q Consensus 517 ~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~----------------- 577 (880)
+. .| +...+..+...|...|++++|...++++.+. .|+ ...+..
T Consensus 489 ~~---------------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 489 AL---------------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred Hh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 52 24 2334444455555555555555555555432 221 222222
Q ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002795 578 ---------------------------LLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALI 630 (880)
Q Consensus 578 ---------------------------ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 630 (880)
+...+...|+.++|..+++. ..++...+..+...+...|++++|+..|
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 23334455555555555541 1223334455666666667777777777
Q ss_pred HHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcccccccc
Q 002795 631 NAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAI 710 (880)
Q Consensus 631 ~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v 710 (880)
++..... .-+...+..+...+...|+.+.|.+.++.+.+.. |+.+.. ...+...+...|++++|.+.+..
T Consensus 627 ~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~--~~~la~~~~~~g~~~eA~~~~~~----- 696 (1157)
T PRK11447 627 QRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNT--QRRVALAWAALGDTAAAQRTFNR----- 696 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHH--HHHHHHHHHhCCCHHHHHHHHHH-----
Confidence 7766431 1134556666666667777777777777666544 233222 22344455567777777554433
Q ss_pred ccccccchhhhhhcccccCCCchhh--------hHhhhcccCCCCCCCCc----cCCccC
Q 002795 711 DISPLHGIHEAFDVKETENVPSSSA--------SMMFENADLGADPLPQK----TDVAVD 758 (880)
Q Consensus 711 ~~~~l~~~~~~f~~~~~~~~~~~~~--------~i~~~G~~~~Al~lf~~----~~~~Pd 758 (880)
+....+.......++ +....|+.++|+..|++ .|+.|.
T Consensus 697 ----------al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 697 ----------LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred ----------HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 111111111111112 22238999999999988 456554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1.5e-17 Score=210.98 Aligned_cols=555 Identities=11% Similarity=0.030 Sum_probs=311.0
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCC--------
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDL-------- 225 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~-------- 225 (880)
.....-..++.....++.+.|.+.+..+.... +.++..+..++..+.+.|+.++|.+.++.+.+..|....
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 33444555566677899999999999998776 668899999999999999999999999999887653211
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhh
Q 002795 226 ----KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300 (880)
Q Consensus 226 ----~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t-~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~ 300 (880)
++......+...+.+.|++++|+..|+.+.+ +.+|+... ...+.......|+.++|...|+++.+.
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~------- 176 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFN--GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD------- 176 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc--CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh-------
Confidence 0011123445578899999999999999987 34455321 111122223469999999999999986
Q ss_pred hhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC------------------CC-HHHHHHH------
Q 002795 301 MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK------------------PS-AATYGLA------ 355 (880)
Q Consensus 301 m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~------------------pd-~~t~~~l------ 355 (880)
.+.+...+..+...+...|+.++|+..|+++...... |. ...+...
T Consensus 177 ---------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 177 ---------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSD 247 (1157)
T ss_pred ---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCC
Confidence 4556777888888899999999999999998653210 00 0001100
Q ss_pred ----------------------------HHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 356 ----------------------------MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407 (880)
Q Consensus 356 ----------------------------l~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~ 407 (880)
..++...|++++|...|++.++.. +.+..++..|..+|.+.|++++|+..|
T Consensus 248 ~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112233444455555554444432 223444444444555555555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHH------------HHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 408 RNMEQRGVVG-TASVYYELA------------CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 408 ~~m~~~g~~p-~~~t~~~Li------------~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
++..+.+... ....|..++ ..+.+.|++++|...|++..... ..+...+..+...+...|++++|
T Consensus 327 ~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 327 EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 5444433221 111122221 12234444555555555444411 11222333444444445555555
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 002795 475 ISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 554 (880)
Q Consensus 475 ~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~ 554 (880)
+..|++..+..+.+...+..+...|. .++.++|+.+++.+...... .+... ...-....+..+...+...|+++
T Consensus 405 ~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~---~~~~~--~~~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 405 ERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRR---SIDDI--ERSLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH---HHHHH--HHHhhhhHHHHHHHHHHHCCCHH
Confidence 55555444433333444444444442 23344444444433221000 00000 00000112334445566779999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 002795 555 YFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 555 ~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
+|.+.+++.++. .|+ ...+..+...|.+.|++++|...|+++.+... .+...+..+...+...|+.++|+..++++
T Consensus 479 eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 479 QAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 999999998864 554 66777888889999999999999999877431 12333333333344446666666666554
Q ss_pred hhCCC---------------------------------------ccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 634 AYAPF---------------------------------------HITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 634 ~~~~~---------------------------------------~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
..... ..+...+..+-..+...|+.+.|...++.+.+..+.
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~ 635 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG 635 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 32111 112223333444556667777777777777666533
Q ss_pred CChhhHHHHHHHHHHHHhccchhhhhhhccccccccccccccchhhhhhcccccCCCchh---hhHhhhcccCCCCCCCC
Q 002795 675 SSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSS---ASMMFENADLGADPLPQ 751 (880)
Q Consensus 675 p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v~~~~l~~~~~~f~~~~~~~~~~~~---~~i~~~G~~~~Al~lf~ 751 (880)
.+ ..+..+...|...|++++|.+.+... .. ....+...+. ......|+.++|+.+|+
T Consensus 636 --~~--~a~~~la~~~~~~g~~~eA~~~l~~l---------------l~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 636 --NA--DARLGLIEVDIAQGDLAAARAQLAKL---------------PA-TANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred --CH--HHHHHHHHHHHHCCCHHHHHHHHHHH---------------hc-cCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 22 23444566666667777776554330 00 1112222222 22223899999999999
Q ss_pred c-cCCccCc
Q 002795 752 K-TDVAVDI 759 (880)
Q Consensus 752 ~-~~~~Pd~ 759 (880)
+ ....|+.
T Consensus 696 ~al~~~~~~ 704 (1157)
T PRK11447 696 RLIPQAKSQ 704 (1157)
T ss_pred HHhhhCccC
Confidence 9 5544443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=9.3e-16 Score=186.36 Aligned_cols=512 Identities=9% Similarity=0.017 Sum_probs=268.2
Q ss_pred hhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 127 VLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSW 206 (880)
Q Consensus 127 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 206 (880)
..+++...|...|...+. ..+.+..++..|...+...|++++|...++...+.. |+-..|..++..+ ++.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~-----~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~ 124 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQ-----QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVE 124 (987)
T ss_pred HhCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccC
Confidence 344556666666655444 333345555666666666666666666666665543 2322222222222 555
Q ss_pred HHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHhc
Q 002795 207 RQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI--------LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-AVTLGQV 277 (880)
Q Consensus 207 ~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~--------~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l-l~~~~~~ 277 (880)
.+|..+++++++..| .+..++..+... |.+. ++|.+.++ .... ...|+..+.... ...|.+.
T Consensus 125 ~kA~~~ye~l~~~~P----~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 125 VKSVTTVEELLAQQK----ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATF-AASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred hhHHHHHHHHHHhCC----CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHHH
Confidence 666666666655443 222333333332 3333 33333333 2211 222233333333 5666666
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-SHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (880)
|++++|+.++..+.+.+ +.+..-+..+-.+|.. .++ +++..+++. .++-+......+.
T Consensus 196 ~dw~~Ai~lL~~L~k~~----------------pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 196 KQWSQADTLYNEARQQN----------------TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred hCHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 66666666666666542 2233334444445554 244 555555332 2223555555666
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC-ccHHHHHHHH------------------------------HHHHhcCCHHHHHH
Q 002795 357 EVMLQSGKYDLVHEFFRKMAKSGEA-IGALTYKVLV------------------------------RAFWEEGKINEAVA 405 (880)
Q Consensus 357 ~a~~~~g~~~~A~~l~~~m~~~g~~-~d~~~~~~Li------------------------------~~~~~~g~~~~A~~ 405 (880)
..+.+.|+.++|.+++.++...-.. |...+|--++ ..+.+.+.++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6666666666666666655443211 2223332221 11222222222222
Q ss_pred HHHH--------HHHCCCC-------------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCCHH
Q 002795 406 AVRN--------MEQRGVV-------------------G-TASVYYELACCLCNNGRWQDAMLVVEKIKSL-RHSKPLEI 456 (880)
Q Consensus 406 ~~~~--------m~~~g~~-------------------p-~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~-~~~~p~~~ 456 (880)
+... +.-.+.. | +....--+.-...+.|+.++|..+|+..... ....++..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 2100 0000000 0 0000001111124566777777777766541 12223333
Q ss_pred HHHHHHHHHHhCCC---HHHHHHH----------------------HHHHhh---CCCC--CHHHHHHHHHHHHhcCCHH
Q 002795 457 TFTGLIISSMDGGH---IDDCISI----------------------FQHMKD---HCEP--NIGTVNAMLKVYSRNDMFS 506 (880)
Q Consensus 457 t~~~ll~a~~~~g~---~~~A~~i----------------------~~~m~~---~~~p--d~~~~~~Li~~~~~~g~~~ 506 (880)
....++..|...+. ..++..+ ...... ..++ +...|..+..++.. ++..
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 44466666666544 2222222 122222 1244 67777777777776 7778
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002795 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586 (880)
Q Consensus 507 ~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G 586 (880)
+|+..|.+.... .|+......+..++...|++++|...|+++... .|+...+..+...+.+.|
T Consensus 494 eAi~a~~~Al~~---------------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 494 VALYAWLQAEQR---------------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHHHh---------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 888877777763 476554444444556778888888888877543 444444556666677888
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHH
Q 002795 587 KCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLL 665 (880)
Q Consensus 587 ~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~ 665 (880)
++++|...|+.....+ |+. ..+..+.......|++++|+..+++... +.|+...|..+-..+.+.|+.+.|...+
T Consensus 557 d~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 557 NGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877654 332 2222233334445888888888888773 3566667777777788888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcc
Q 002795 666 NALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAH 704 (880)
Q Consensus 666 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~ 704 (880)
++..+..+ +.+. .+..+...+...|+.++|+..+.
T Consensus 633 ~~AL~l~P--d~~~--a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 633 RAALELEP--NNSN--YQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHhCC--CCHH--HHHHHHHHHHHCCCHHHHHHHHH
Confidence 88887774 3332 23345666777888888766543
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1e-17 Score=188.97 Aligned_cols=296 Identities=13% Similarity=0.128 Sum_probs=200.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHh
Q 002795 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP--DIAAYHSVAVTLGQ 276 (880)
Q Consensus 199 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~p--d~~t~~~ll~~~~~ 276 (880)
.+...|++++|...|..+++..+ .+..++..+...+...|++++|..+++.+.......+ ...++..+...|.+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455677777777777765433 3455677777777777777777777777665411111 12456666777777
Q ss_pred cCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHH
Q 002795 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS----AATY 352 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~ 352 (880)
.|++++|..+|.++.+. .+++..+++.++..|.+.|++++|.+.++.+.+.+..+. ...+
T Consensus 120 ~g~~~~A~~~~~~~l~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE----------------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred CCCHHHHHHHHHHHHcC----------------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 77777777777777654 344566777777777777777777777777766543322 1234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~ 432 (880)
..+...+.+.|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......+++.++.+|...
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 455666677778888888887777654 3345567777777888888888888888877654433345567777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh---cCCHHHHH
Q 002795 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR---NDMFSKAK 509 (880)
Q Consensus 433 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~---~g~~~~A~ 509 (880)
|++++|...++++.. ..|+...+..+...+.+.|++++|..+|+.+.+. .|+..+++.++..+.. .|+..+++
T Consensus 263 g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 263 GDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 888888888888776 3455556677777788888888888888776653 4777777777777664 45778888
Q ss_pred HHHHHHHHcC
Q 002795 510 ELFEETTRAN 519 (880)
Q Consensus 510 ~lf~~m~~~g 519 (880)
.+|++|.+.+
T Consensus 339 ~~~~~~~~~~ 348 (389)
T PRK11788 339 LLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=4.3e-17 Score=175.50 Aligned_cols=433 Identities=15% Similarity=0.118 Sum_probs=351.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
...|.+.+-+.|++.+|.+.-...-+.. +.+......+-..+.+..+++...+--...++..+ .-..+|..+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~----q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP----QGAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc----hHHHHHHHHHHH
Confidence 4567788889999999988766655544 44455555555666666777766555555554433 345789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHH
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~t 316 (880)
+-..|++++|+.+++.+.+. .| ....|..+..++...|+.+.|...|.+..+ ..|+.+.
T Consensus 126 ~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alq-----------------lnP~l~c 185 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----------------LNPDLYC 185 (966)
T ss_pred HHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----------------cCcchhh
Confidence 99999999999999999984 45 577899999999999999999999999987 6677766
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 002795 317 YNAVLNA-CVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF 394 (880)
Q Consensus 317 y~~ll~~-~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~ 394 (880)
..+-+.- .-..|++.+|...|.+.... .|. ...|+.|.-.+-..|++..|.+.|++.++.. +.-...|-.|.+.|
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVY 262 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHH
Confidence 5554444 44579999999999988764 343 4567788888889999999999999999865 22367888999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHH
Q 002795 395 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDD 473 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~~~~ 473 (880)
...+.+++|+..|.+....... ....+..|...|-..|.++-|+..+++..+ ..|+ ...|+.|..++-..|++.+
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHH
Confidence 9999999999999988765432 345566777888999999999999999987 4454 3579999999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCC
Q 002795 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQ 552 (880)
Q Consensus 474 A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~ 552 (880)
|...|.....-++....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|...|+
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---------------v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---------------VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---------------hChhhhhhhhhHHHHHHhccc
Confidence 99999999887778899999999999999999999999999988 5575 4578899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHH
Q 002795 553 WEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQSNYEKAVALI 630 (880)
Q Consensus 553 ~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~l~ 630 (880)
+++|...+++.+. +.|+ ...|+.+-..|-..|++..|.+.+.+.+.. .|.- ...+++...|-.+|+..+|+.-+
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999999875 7888 678999999999999999999999988774 4543 35566777777789999999999
Q ss_pred HHhhhCCCccCHH
Q 002795 631 NAMAYAPFHITER 643 (880)
Q Consensus 631 ~~m~~~~~~p~~~ 643 (880)
++.. .++||..
T Consensus 480 ~~aL--klkPDfp 490 (966)
T KOG4626|consen 480 RTAL--KLKPDFP 490 (966)
T ss_pred HHHH--ccCCCCc
Confidence 9987 5677654
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.4e-17 Score=185.99 Aligned_cols=302 Identities=10% Similarity=0.055 Sum_probs=167.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC---HH
Q 002795 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS---AA 350 (880)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~ 350 (880)
+...|++++|...|.++.+. .+.+..+|..+...+...|++++|..+++.+...+..++ ..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 108 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV----------------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLL 108 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 34455555555555555553 223344555555555555555555555555554321111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002795 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430 (880)
Q Consensus 351 t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~ 430 (880)
++..+...+.+.|+++.|..+|.++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+....
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------- 178 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------- 178 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------
Confidence 33444444444455555555554444432 22344444444444444444444444444444332211100
Q ss_pred hCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002795 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKE 510 (880)
Q Consensus 431 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~ 510 (880)
....+..+...+.+.|++++|..+|+++.+..+.+...+..+...|.+.|++++|.+
T Consensus 179 -----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 179 -----------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred -----------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 011233444455556666666666666555333445566666677777777777777
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002795 511 LFEETTRANSSGYTFLSGDGAPLKPD--EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588 (880)
Q Consensus 511 lf~~m~~~g~~~~~~l~~~~~~~~Pd--~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~ 588 (880)
+|+++...+ |+ ..+++.+..+|...|++++|...++++.+. .|+...+..+...|.+.|++
T Consensus 236 ~~~~~~~~~---------------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 236 ALERVEEQD---------------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHC---------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCH
Confidence 777776632 43 345666777777777777777777777654 45555556667777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHhhhCCCccCHH
Q 002795 589 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV---QSNYEKAVALINAMAYAPFHITER 643 (880)
Q Consensus 589 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~ 643 (880)
++|..+|+.+.+. .|+...++.++..++. .|+.++|+.++++|...++.|++.
T Consensus 299 ~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 299 EAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777776664 4777777766666654 346777777777777666665555
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=4.6e-16 Score=167.65 Aligned_cols=448 Identities=13% Similarity=0.075 Sum_probs=354.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
...|....-+.|++.+|++--..+....+ .+....-.+-.++....+.+....--....+ ..+.-..+|..+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~----t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP----TNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--KNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC----Ccccceeeehhhhhcccchhhhhhhhhhhhh--ccchHHHHHHHHHH
Confidence 55666777788999999998776654433 2222233344456666677665544333333 23445779999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+-..|+++.|+.+|+.+.+. .+..+..|..+..++...|+.+.|.+.|.+..+. .|+....
T Consensus 125 ~~kerg~~~~al~~y~~aiel----------------~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIEL----------------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhc----------------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhh
Confidence 999999999999999999986 4557889999999999999999999999998874 5765544
Q ss_pred HH-HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 353 GL-AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 353 ~~-ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
.+ +-..+-..|++.+|...|.+.++.. +-=.+.|+.|...+-.+|++..|+..|++....++.- ...|..|...|..
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKE 264 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHH
Confidence 33 3344456799999999999988874 2236789999999999999999999999998876532 3346678999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002795 432 NGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKE 510 (880)
Q Consensus 432 ~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~ 510 (880)
.+.++.|+..+.+... ..|+. ..+..+...|-..|.++.|+..|++..+..+.=...|+.|..++-..|+..+|..
T Consensus 265 ~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH
Confidence 9999999999998876 55665 5677777788899999999999999988655568899999999999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 002795 511 LFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKC 588 (880)
Q Consensus 511 lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~ 588 (880)
.|.+.+.. .| ...+.+.|...+...|..+.|..+|....+ +.|. ...++.|...|-..|++
T Consensus 342 cYnkaL~l---------------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 342 CYNKALRL---------------CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHHHh---------------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccH
Confidence 99999985 36 456889999999999999999999998875 5666 66788999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHhhhccCHHHHHHHHH
Q 002795 589 HLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITER-QWTELFESNEDRISRDKLEKLLN 666 (880)
Q Consensus 589 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~a~~~~~~~~~a~~l~~ 666 (880)
++|...+++..+ +.|+ ...|++|...|-..|+...|++.+.+.. .+.|+.. ..+.|-+.+...|++..|++-++
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999887 5565 3478889999999999999999999887 4566654 46667778999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHHH
Q 002795 667 ALCNCNAASSEITVSNLSRALHALC 691 (880)
Q Consensus 667 ~~~~~~~~p~~~~~~~~~~~~~~~~ 691 (880)
...+..+.-. -..-++...+..-|
T Consensus 481 ~aLklkPDfp-dA~cNllh~lq~vc 504 (966)
T KOG4626|consen 481 TALKLKPDFP-DAYCNLLHCLQIVC 504 (966)
T ss_pred HHHccCCCCc-hhhhHHHHHHHHHh
Confidence 9998876522 23334433333334
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=3.6e-14 Score=172.62 Aligned_cols=510 Identities=11% Similarity=0.009 Sum_probs=338.3
Q ss_pred hhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------
Q 002795 127 VLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKG------- 199 (880)
Q Consensus 127 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~------- 199 (880)
+.-++++.|+....+.+. ..+.+...+..+ ..+ +++.+|..+++++.... +-+..++..+...
T Consensus 89 l~~g~~~~A~~~~~kAv~-----ldP~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 89 RHFGHDDRARLLLEDQLK-----RHPGDARLERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHCCCHHHHHHHHHHHHh-----cCcccHHHHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchh
Confidence 455788888888877655 333344444443 333 89999999999999876 5556666666665
Q ss_pred -HHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-
Q 002795 200 -LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT-KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ- 276 (880)
Q Consensus 200 -~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~-~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~- 276 (880)
|.+. ++|.+.++ . +.. ...|+..+.. .+...|.+.|++++|+.++.++.+. -+.+..-+..|..+|..
T Consensus 159 ~y~q~---eqAl~AL~-l-r~~--~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~--~pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 159 RLAQL---PVARAQLN-D-ATF--AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ--NTLSAAERRQWFDVLLAG 229 (987)
T ss_pred hhhhH---HHHHHHHH-H-hhh--CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 5554 55555555 2 211 1223444444 4499999999999999999999985 23344456667677777
Q ss_pred cCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-CCHHHHHH-
Q 002795 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-PSAATYGL- 354 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~- 354 (880)
.++ +++..++.. . ...+...+..+...|.+.|+.++|..+++++...-.. |...++--
T Consensus 230 l~~-~~a~al~~~----~---------------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 230 QLD-DRLLALQSQ----G---------------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred hCH-HHHHHHhch----h---------------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 366 777777443 1 5568889999999999999999999999888643221 22222111
Q ss_pred -----------------------------HHHHHHHcCChHHHHHH-----------------------------HHHHH
Q 002795 355 -----------------------------AMEVMLQSGKYDLVHEF-----------------------------FRKMA 376 (880)
Q Consensus 355 -----------------------------ll~a~~~~g~~~~A~~l-----------------------------~~~m~ 376 (880)
++.-+.+.++++.++++ +..|.
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 12233344444433333 22222
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCC---HHHHHHH----------
Q 002795 377 KSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR--GVVGTASVYYELACCLCNNGR---WQDAMLV---------- 441 (880)
Q Consensus 377 ~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~Li~~~~~~g~---~~~A~~l---------- 441 (880)
+.. +-+....--+.-...+.|+.++|.++|+..... +-.++.....-++..|.+.+. ...+..+
T Consensus 370 ~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 370 QQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 221 112333333334456778899999999887762 223344445567777777665 3333222
Q ss_pred ------------HHHHHhcCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 002795 442 ------------VEKIKSLRHSKP---LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 506 (880)
Q Consensus 442 ------------~~~m~~~~~~~p---~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~ 506 (880)
+.......+..| +...+..+..++.. ++.++|...|....... |+......+...+...|+++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHHHHHHHHHHHCCCHH
Confidence 222222122223 44566666666665 78888999777776633 45444444455556899999
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 002795 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRA 585 (880)
Q Consensus 507 ~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~ 585 (880)
+|...|+++... .|+...+..+..++...|+.+.|...++...+.. |+ ...+..+...+.+.
T Consensus 527 eAi~~~rka~~~---------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 527 TALAAWQKISLH---------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHhcc---------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence 999999998663 3555667777788889999999999999998754 44 33333343444566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHH-HHhhhccCHHHHHHH
Q 002795 586 GKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELF-ESNEDRISRDKLEKL 664 (880)
Q Consensus 586 G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll-~a~~~~~~~~~a~~l 664 (880)
|++++|...|++..+.. |+...|..+...+.+.|++++|+..+++... ..|+...+...+ .++...|+.+.|+..
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988754 7788888888999999999999999999884 466655544444 468889999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhc
Q 002795 665 LNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSA 703 (880)
Q Consensus 665 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~ 703 (880)
++...+..+ +++. .+..+...+...|++++|...+
T Consensus 666 l~~AL~l~P--~~~~--a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 666 LERAHKGLP--DDPA--LIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHhCC--CCHH--HHHHHHHHHHHCCCHHHHHHHH
Confidence 999998775 4433 3445677888999998887654
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.7e-14 Score=172.07 Aligned_cols=410 Identities=11% Similarity=0.031 Sum_probs=288.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
.+......+.+.|++++|+..|+..... .|+...|..+...|...|++++|+..++.+++..+ .+..+|..+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p----~~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP----DYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 4456677888899999999999998865 46888899999999999999999999999987654 56788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCch-----hHhhhhhhcCCC---
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK-----RIKNMHRKNWDP--- 308 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-----~l~~m~~~~f~~--- 308 (880)
+|...|++++|+..|.......+. +......++..+.. ..+............. ....-|...+..
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~--~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGF--RNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 999999999999988877654222 11111122211111 1111212211111100 000001010100
Q ss_pred ------C--CCCC-HHHHHHHHHH---HhcCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002795 309 ------V--LEPD-LVVYNAVLNA---CVPSHQWKGVFWVFKQLRKSG-LKP-SAATYGLAMEVMLQSGKYDLVHEFFRK 374 (880)
Q Consensus 309 ------~--~~pd-~~ty~~ll~~---~~~~g~~~~A~~l~~~m~~~g-~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~ 374 (880)
. ..++ ...+..+... ....+++++|...|+.....+ ..| ....|..+...+...|++++|...|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 0000 0001111100 123468999999999998765 234 455677788888899999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Q 002795 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 454 (880)
Q Consensus 375 m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~ 454 (880)
.++.. +.+...|..+...+...|++++|...|++..+.+.. +..+|..+...+...|++++|+..|++... ..|+
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~ 431 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPD 431 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCcc
Confidence 99874 334678889999999999999999999999887643 567788899999999999999999999987 3454
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 002795 455 -EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533 (880)
Q Consensus 455 -~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~ 533 (880)
...+..+...+.+.|++++|...|+......+.+...|+.+...|...|++++|+..|++.....
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------------- 497 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE-------------- 497 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------
Confidence 45677788889999999999999999988777788999999999999999999999999998843
Q ss_pred CCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 534 KPDE-Y-------TYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLE 600 (880)
Q Consensus 534 ~Pd~-~-------t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~ 600 (880)
|+. . .++..+..+...|++++|.+++++.... .|+ ...+..+...+...|++++|...|++..+
T Consensus 498 -p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 498 -KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred -CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 421 1 1122222233347777777777776653 343 34566666667777777777777776655
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=1.6e-14 Score=172.29 Aligned_cols=96 Identities=9% Similarity=-0.050 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l 270 (880)
..+......+.+.|+++.|...|+.++. ..|+...|..+..+|.+.|++++|+..++...+. -+.+...|..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~ 200 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence 4456777888899999999999998864 3467788999999999999999999999998873 23356788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 002795 271 AVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
..+|...|++++|+.-|......
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCII 223 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999888766553
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.1e-14 Score=173.45 Aligned_cols=335 Identities=12% Similarity=0.027 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
.-...++..+.+.|++.+|+.+++...... +-+...+..++.++...|+++.|...++.++...| .+...+..+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P----~~~~a~~~la 117 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV----CQPEDVLLVA 117 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC----CChHHHHHHH
Confidence 345566777888999999999999988766 44555666666777789999999999999988765 4567888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
..+...|++++|+..|++..+. .+.+...+..+...+...|++++|...+..+.... +.+..
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----------------P~~~~ 179 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV----------------PPRGD 179 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------CCCHH
Confidence 9999999999999999999873 33457788888999999999999999999887642 23333
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~ 395 (880)
.+..+ ..+...|++++|..+++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 180 a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 180 MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYY 257 (656)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44333 3478899999999999998776433455555666778889999999999999999875 456788888999999
Q ss_pred hcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCC
Q 002795 396 EEGKINE----AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGH 470 (880)
Q Consensus 396 ~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~ 470 (880)
..|++++ |...|++.....+. +...+..+...+...|++++|+..+++... ..|+ ...+..+..++.+.|+
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC
Confidence 9999985 89999999887643 567788899999999999999999999887 3344 3456677788999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
+++|...|+.+....+.+...+..+..++...|+.++|...|++..+..
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999998887433344445556778899999999999999998853
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=1.2e-14 Score=172.82 Aligned_cols=334 Identities=12% Similarity=0.035 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
..-...++..+.+.|++.+|+.+++.++...+ .+...+..++.++...|++++|+..|+++.+. .+.+...|..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p----~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~ 115 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK----NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLL 115 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC----CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 33445667788899999999999999987665 34456666667778899999999999999984 3445677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (880)
+...+...|++++|...|++..+. .+.+...|..+...+...|++++|...++.+...... +.
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l----------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~ 178 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLA----------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RG 178 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CH
Confidence 889999999999999999999885 4556778889999999999999999999988765433 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429 (880)
Q Consensus 350 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~ 429 (880)
..+..+ ..+...|++++|..+++.+.+....++...+..+..++...|++++|...|+++...+.. +...+..+...|
T Consensus 179 ~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l 256 (656)
T PRK15174 179 DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAY 256 (656)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 333333 347889999999999999888753344555666778899999999999999999987643 566778899999
Q ss_pred HhCCCHHH----HHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 002795 430 CNNGRWQD----AMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 504 (880)
Q Consensus 430 ~~~g~~~~----A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~ 504 (880)
...|++++ |...|++... ..|+ ...+..+...+...|++++|...++......+.+...+..+..+|.+.|+
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999986 8999999887 3444 46788888999999999999999999988666678888889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT-YSSMLEASATAHQWEYFEYVYKGMALS 566 (880)
Q Consensus 505 ~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t-~~~ll~a~~~~~~~~~A~~l~~~m~~~ 566 (880)
+++|+..|+++.... |+... +..+..++...|+.++|...|++..+.
T Consensus 334 ~~eA~~~l~~al~~~---------------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 334 YTAASDEFVQLAREK---------------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHhC---------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999854 65543 444566788899999999999998865
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=8.4e-14 Score=169.26 Aligned_cols=303 Identities=8% Similarity=0.061 Sum_probs=167.5
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 002795 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (880)
Q Consensus 153 ~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~ 232 (880)
.++.-..-.+.+....|+.++|+.++....... +.+...+..+...+...|++++|..+++.++...| .+...+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP----QNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHH
Confidence 344455555666667778888887777776533 45555677777777788888888888887766543 4455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
.+...+...|++++|+..+++..+. .+.+.. +..+..++...|+.++|+..++++.+. .+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~----------------~P~ 148 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR----------------APQ 148 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCC
Confidence 7777777788888888888877763 333444 767777777778888888888877775 344
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHHc
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA------ATYGLAMEVML-----QSGKY---DLVHEFFRKMAKS 378 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~t~~~ll~a~~-----~~g~~---~~A~~l~~~m~~~ 378 (880)
+...+..+...+...+..+.|+..++.... .|+. .....++.... ..+++ +.|...++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 555556666667777777777777765442 2321 01111111111 11122 4455555555543
Q ss_pred -CCCccHH-H----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002795 379 -GEAIGAL-T----YKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 451 (880)
Q Consensus 379 -g~~~d~~-~----~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 451 (880)
...|+.. . ....+.++...|++++|+..|+.+.+.+.. |+.. ...+...|...|++++|+..|+++......
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1111110 0 011122333445566666666665554421 2211 111344555566666666666655441111
Q ss_pred CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 452 KP--LEITFTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 452 ~p--~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
.+ .......+..++...|++++|..+++.+..
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 10 012233444445555555555555555554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=9e-14 Score=169.01 Aligned_cols=424 Identities=11% Similarity=0.036 Sum_probs=285.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255 (880)
Q Consensus 176 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~ 255 (880)
..++. .+.+ +.+.....-.+......|+.++|++++..+.... ..+...+..+..++.+.|++++|..+|++..
T Consensus 3 ~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~----~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al 76 (765)
T PRK10049 3 SWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM----QLPARGYAAVAVAYRNLKQWQNSLTLWQKAL 76 (765)
T ss_pred hhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455 3333 6788888888899999999999999999886422 2566779999999999999999999999988
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 002795 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (880)
Q Consensus 256 ~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~ 335 (880)
+. -+.+...+..+...+...|++++|+..++++.+. .+.+.. |..+..++...|+.++|+.
T Consensus 77 ~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----------------~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 77 SL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----------------APDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred Hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 74 3445777888889999999999999999999885 455566 8888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH------HHHHHHHHHHH-----hcCCH---H
Q 002795 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA------LTYKVLVRAFW-----EEGKI---N 401 (880)
Q Consensus 336 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~------~~~~~Li~~~~-----~~g~~---~ 401 (880)
.++++.+.... +...+..+..++...+..+.|...++.+.. .|+. .....++..+. ..+++ +
T Consensus 138 ~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 138 AMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 99999986422 455556677788888999999998876654 1221 12222333332 22334 7
Q ss_pred HHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 002795 402 EAVAAVRNMEQR-GVVGTAS-VY----YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 475 (880)
Q Consensus 402 ~A~~~~~~m~~~-g~~p~~~-t~----~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~ 475 (880)
+|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.......|+. ....+..+|...|++++|.
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence 889999998864 2222221 11 111344567799999999999998732222443 2223466899999999999
Q ss_pred HHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH---HHHHHHHHHHH
Q 002795 476 SIFQHMKDHCEPN----IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE---YTYSSMLEASA 548 (880)
Q Consensus 476 ~i~~~m~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~---~t~~~ll~a~~ 548 (880)
.+|+.+....+.+ ...+..+..++...|++++|..+++.+...... +..+.+ ...-.|+. ..+..+...+.
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~-~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP-FLRLYG-SPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecC-CCCCCCCchHHHHHHHHHHHHH
Confidence 9999987642212 456677778899999999999999999885310 000000 00112331 23344455555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHH
Q 002795 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAV 627 (880)
Q Consensus 549 ~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~ 627 (880)
..|++++|.++++++... .+-+...+..+...+...|++++|+..+++..... |+ ...+......+...|++++|.
T Consensus 371 ~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 371 YSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHH
Confidence 666666666666666543 12235555555556666666666666666655532 33 333444444555556666666
Q ss_pred HHHHHhh
Q 002795 628 ALINAMA 634 (880)
Q Consensus 628 ~l~~~m~ 634 (880)
.+++++.
T Consensus 448 ~~~~~ll 454 (765)
T PRK10049 448 VLTDDVV 454 (765)
T ss_pred HHHHHHH
Confidence 6666665
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.6e-13 Score=142.50 Aligned_cols=421 Identities=12% Similarity=0.063 Sum_probs=300.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHhcCCHH-HHHHHHHHHHhCCch--------h
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV--TLGQVGLLK-ELVKLIERMRQKPSK--------R 297 (880)
Q Consensus 229 ~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~--~~~~~g~~~-~A~~l~~~m~~~g~~--------~ 297 (880)
.+=|.|+.+ ...|.+..+.-+|+.|..+ |++.+...-..|+. +|..+.+.- --.+.|-.|...|.. .
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344555543 3456666677777777665 55555444433333 222222221 112344444444311 1
Q ss_pred HhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002795 298 IKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK 377 (880)
Q Consensus 298 l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~ 377 (880)
+.++ +-+..+....+|.+||.+.++--..+.|.++|++-.....+.+..+||.+|.+-.-. ...++..+|+.
T Consensus 195 vAdL----~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis 266 (625)
T KOG4422|consen 195 VADL----LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS 266 (625)
T ss_pred HHHH----HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH
Confidence 1121 122266778899999999999999999999999999888889999999999876543 33889999999
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhc-C--
Q 002795 378 SGEAIGALTYKVLVRAFWEEGKINE----AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ-DAMLVVEKIKSL-R-- 449 (880)
Q Consensus 378 ~g~~~d~~~~~~Li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~-~A~~l~~~m~~~-~-- 449 (880)
..+.||..|+|+++.+.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++.. .|..++..+... .
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 9999999999999999999998875 5678899999999999999999999999988874 455555555431 1
Q ss_pred ---CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 450 ---HSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH-----CEPN---IGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 450 ---~~~p-~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~-----~~pd---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
...| +...|...+..|.+..+.+.|.++..-+..+ +.|+ ..-|..+....|+....+.-...|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223 3456889999999999999999999888764 4454 33466788888999999999999999987
Q ss_pred cCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-C---H-----
Q 002795 518 ANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG-K---C----- 588 (880)
Q Consensus 518 ~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G-~---~----- 588 (880)
.- .-|+..+...+++|....+.++..-+++..++..|...+.....-++..+++.. . .
T Consensus 427 ~~-------------y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 427 SA-------------YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred ce-------------ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 64 678999999999999999999999999999988876555544444444444332 1 1
Q ss_pred H-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhC----CCccCHHHHHHHHHHh
Q 002795 589 H-----LLEHAF-------DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA----PFHITERQWTELFESN 652 (880)
Q Consensus 589 ~-----~A~~~~-------~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~ll~a~ 652 (880)
. -|..++ .+|.... -.....+++...+.+.|..++|.+++...... +..|.-.....++.+.
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 0 011111 2333333 34457777888888999999999999988533 3345555556777777
Q ss_pred hhccCHHHHHHHHHHHHhCCCC
Q 002795 653 EDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 653 ~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
....+...|...++.+...+..
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcCch
Confidence 8888888999999988776654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=6.8e-13 Score=151.22 Aligned_cols=566 Identities=10% Similarity=0.033 Sum_probs=345.2
Q ss_pred chhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 132 VQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSG--LMFTEGQMLKLLKGLGDKGSWRQA 209 (880)
Q Consensus 132 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A 209 (880)
.+.|...|..... ...++.-.+--=+......++|..|+.+|....... .+||.. ..+...+.++|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~-----~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK-----QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHh-----hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhH
Confidence 3455566654333 222222333333345556889999999998866533 334443 2334566788999999
Q ss_pred HHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 210 MSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR---PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKL 286 (880)
Q Consensus 210 ~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~---~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l 286 (880)
+..|..++...| .++.++-.|...-....+ +..+..++...-.. -+-|+...+.|...|.-.|++..+..+
T Consensus 219 ~~a~~ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 219 LLAFERALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred HHHHHHHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 999998877654 344444444433333333 34455555554442 233566777888888888999999888
Q ss_pred HHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC
Q 002795 287 IERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA--ATYGLAMEVMLQSGK 364 (880)
Q Consensus 287 ~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~ 364 (880)
...+...... -.--..+|--+.++|-..|++++|..+|.+..+. .|+. ..+-.+...+.+.|+
T Consensus 293 a~~ai~~t~~-------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 293 AEHAIKNTEN-------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHHHHhhhh-------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhch
Confidence 8888764200 1112335777888888899999999988887764 3443 344557788889999
Q ss_pred hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 365 YDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEG----KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440 (880)
Q Consensus 365 ~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 440 (880)
++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..+..+. |...|-.+...|....-+. ++.
T Consensus 358 le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHH-HHH
Confidence 999999999988874 556677777777777765 456777777777766533 5666766666655544433 366
Q ss_pred HHHHHHh---cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CCCCH------HHHHHHHHHHHhcCCHHH
Q 002795 441 VVEKIKS---LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH----CEPNI------GTVNAMLKVYSRNDMFSK 507 (880)
Q Consensus 441 l~~~m~~---~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~----~~pd~------~~~~~Li~~~~~~g~~~~ 507 (880)
+|..... ..+..+-....|.+.......|.++.|...|...... ..++. .+--.+...+-..++++.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 6654431 1233355667888888888889999998888887654 22222 222334555556678888
Q ss_pred HHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002795 508 AKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586 (880)
Q Consensus 508 A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G 586 (880)
|.+.|..+++.. |.-+ .|..++......+...+|...++..... ...++..++.+...|.+..
T Consensus 515 A~e~Yk~Ilkeh---------------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 515 AEEMYKSILKEH---------------PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHHHHC---------------chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhh
Confidence 888888888854 6544 3444442222336777777777776643 2334444444444666666
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHh------------CCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHh
Q 002795 587 KCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQ------------SNYEKAVALINAMAYAPFHITE-RQWTELFESN 652 (880)
Q Consensus 587 ~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~------------g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~a~ 652 (880)
.+.-|..-|...... ...+|..+.-.|...+.+. +..++|+++|.+.+.. .|.. ..-+-+--..
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVL 656 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhh
Confidence 677777766655553 2224555444444433321 2356777777777632 2221 1112222234
Q ss_pred hhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccccccccccccccchhhhhhcccccCCCc
Q 002795 653 EDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPS 732 (880)
Q Consensus 653 ~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v~~~~l~~~~~~f~~~~~~~~~~ 732 (880)
+..|.+..|..+|.++.++... ...+ +..+.|+|..+|++..|++++.. +.++ |...+...+..
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~~-~~dv---~lNlah~~~e~~qy~~AIqmYe~-----------~lkk-f~~~~~~~vl~ 720 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATSD-FEDV---WLNLAHCYVEQGQYRLAIQMYEN-----------CLKK-FYKKNRSEVLH 720 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHhh-CCce---eeeHHHHHHHHHHHHHHHHHHHH-----------HHHH-hcccCCHHHHH
Confidence 5667777788888888877653 1222 33447788888888888887777 5555 33334444444
Q ss_pred hhhhHhh-hcccCCCCCCCCc-cCCccCcccc
Q 002795 733 SSASMMF-ENADLGADPLPQK-TDVAVDIDSI 762 (880)
Q Consensus 733 ~~~~i~~-~G~~~~Al~lf~~-~~~~Pd~~t~ 762 (880)
+-+-... .|...+|..-... ..+.|...++
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 4444444 6666666665555 5566655544
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.7e-12 Score=135.06 Aligned_cols=440 Identities=12% Similarity=0.137 Sum_probs=231.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
-+.|+ -+...+.+.++.-+|+.|.+.|++.+...-..|++.-+-.+.-+--..-+++.+..... ...+..+|
T Consensus 119 E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~-~E~S~~sW------ 190 (625)
T KOG4422|consen 119 ENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF-GEDSTSSW------ 190 (625)
T ss_pred hhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc-cccccccc------
Confidence 34444 34567889999999999999999988887777776554332211111112222211111 01111222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
+.|.+.+ -+|+..++ +..||.+||.++|+--..+.|.++|.+..... .+.+..+|
T Consensus 191 --K~G~vAd--L~~E~~PK------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---------------~kv~~~aF 245 (625)
T KOG4422|consen 191 --KSGAVAD--LLFETLPK------TDETVSIMIAGLCKFSSLERARELYKEHRAAK---------------GKVYREAF 245 (625)
T ss_pred --ccccHHH--HHHhhcCC------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---------------heeeHHhh
Confidence 2343332 23333322 45566666666666666666666666665544 55566666
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCccHHHHHHHHHH
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL----VHEFFRKMAKSGEAIGALTYKVLVRA 393 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----A~~l~~~m~~~g~~~d~~~~~~Li~~ 393 (880)
|.+|.+-. +....+++.+|....++||..|||+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..
T Consensus 246 N~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~ 321 (625)
T KOG4422|consen 246 NGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKN 321 (625)
T ss_pred hhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 66665532 12225566666666666666666666666666665543 34555666666666666666666666
Q ss_pred HHhcCCHHH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CCCC---HHHH
Q 002795 394 FWEEGKINE-AVAAVRNMEQ----RGVVG----TASVYYELACCLCNNGRWQDAMLVVEKIKSLRH---SKPL---EITF 458 (880)
Q Consensus 394 ~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~---~~p~---~~t~ 458 (880)
+++.++..+ |..++.++.. +...| +...|...+..|....+.+-|.++..-+....+ +.|+ .+-|
T Consensus 322 f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYy 401 (625)
T KOG4422|consen 322 FKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYY 401 (625)
T ss_pred hcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHH
Confidence 666555432 3333333332 11111 223344444445555555555555554443111 1122 1224
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC------CCC
Q 002795 459 TGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG------DGA 531 (880)
Q Consensus 459 ~~ll~a~~~~g~~~~A~~i~~~m~~~-~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~------~~~ 531 (880)
..+....|....++.-...|+.|.-. .-|+..+...++++..-.|+++-.-+++.+|...|+.....+.. ...
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 45555556666666666666666553 45555666666666666666666666666665554110000000 000
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH
Q 002795 532 PLKP---DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHP 607 (880)
Q Consensus 532 ~~~P---d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~-g~~p~~ 607 (880)
...| ...-+.....-|+. .-.+.....-.+|.+..+. ....+.+...+.+.|..++|.++|..+.+. +-.|-.
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 1222 22223332222221 1111122222344444443 445566666788999999999999988654 344555
Q ss_pred HHHH---HHHHHHHHhCCHHHHHHHHHHhhhCC
Q 002795 608 LFFT---EMLIQAIVQSNYEKAVALINAMAYAP 637 (880)
Q Consensus 608 ~~~~---~ll~~~~~~g~~~~A~~l~~~m~~~~ 637 (880)
...| .++....+......|+..++-|...+
T Consensus 559 p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 559 PLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 5555 55666667778888998888886443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.6e-12 Score=145.48 Aligned_cols=464 Identities=11% Similarity=0.053 Sum_probs=307.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002795 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRI 250 (880)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~l 250 (880)
+..++.++...-... +-++...+.|...|.-.|++..+..+.+.++....... .-...|-.+..+|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~-~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS-IKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhhccHHHHHHH
Confidence 334444444443333 34566666666666666666666666666654331100 1123455666666666777777766
Q ss_pred HHHHHHcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC
Q 002795 251 FNLMLEDCNLYPDIAA--YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH 328 (880)
Q Consensus 251 f~~m~~~~g~~pd~~t--~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g 328 (880)
|.+..+. .||..+ +--|...+.+.|+++.+...|+...+. .+-+..+.-.|...|+..+
T Consensus 330 Y~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~----------------~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 330 YMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ----------------LPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh----------------CcchHHHHHHHHhHHHhhh
Confidence 6665542 344322 334555666667777777666666654 3444555555555566554
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCccHHHHHHHHHHHHhcCCH
Q 002795 329 ----QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM----AKSGEAIGALTYKVLVRAFWEEGKI 400 (880)
Q Consensus 329 ----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m----~~~g~~~d~~~~~~Li~~~~~~g~~ 400 (880)
..+.|..++.+..+.- .-|...|-.+...+-. ++...+..+|... ...+.++-+...|.+...+...|.+
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 3455555555555432 2255555555544433 3333335555443 3445456678888899999999999
Q ss_pred HHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCC
Q 002795 401 NEAVAAVRNMEQR---GVVGTA------SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGH 470 (880)
Q Consensus 401 ~~A~~~~~~m~~~---g~~p~~------~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~a~~~~g~ 470 (880)
+.|...|...... ...++. .+-..+..++-..++.+.|...|..+.+ ..|.-+. |..+..+.-..+.
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk---ehp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK---EHPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH---HCchhHHHHHHhhHHHHhccC
Confidence 9999998887765 122222 2223367777788889999999999887 4565543 4444433445578
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
..+|...+.........++..++-+...+.+...+..|.+-|....+.- ...+|.++.-+|.+.|...
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~------------~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT------------STKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh------------ccCCchhHHHHhhHHHHHH
Confidence 8889999998888666777788888888888888888888888777753 1347888877777766543
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002795 551 ------------HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI 618 (880)
Q Consensus 551 ------------~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 618 (880)
+..++|+++|.+.++.. +-|.+.-|-+...++.+|++.+|..+|.+..+... -...+|-++..+|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHH
Confidence 45789999999888642 44677777788889999999999999999998653 12337888999999
Q ss_pred HhCCHHHHHHHHHHhhhCCC-ccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 619 VQSNYEKAVALINAMAYAPF-HITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 619 ~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
.+|++..|+++|+.....-. +-++.....|-+++...+.+..+...+.......+.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99999999999998764333 445666777778888999999888887777666644
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=2.1e-11 Score=145.87 Aligned_cols=449 Identities=11% Similarity=0.044 Sum_probs=311.8
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~ 233 (880)
.+.....-+-...+.|++..|+..|++..+.. +-+......++..+...|+.++|+..++..+.. ..........
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p----~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS----MNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC----CCCCHHHHHH
Confidence 44444455556678999999999999998775 333223338888888999999999999988621 1134445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 234 Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+...|...|++++|+++|+++.+. .+-+...+..++..+...++.++|++.+..+.. ..|+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-----------------~dp~ 168 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAE-----------------RDPT 168 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-----------------cCcc
Confidence 577888999999999999999985 344567777888899999999999999999987 4566
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHH------H
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALT------Y 387 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~------~ 387 (880)
...+-.++..+...++..+|+..++++.+.. +-+...+..+..++.+.|-...|.++..+-... +.+.... .
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~ 246 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAA 246 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHH
Confidence 6666445444555677767999999999874 236777788889999999998888776653321 1111100 1
Q ss_pred HHHHHHH-----HhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Q 002795 388 KVLVRAF-----WEEGK---INEAVAAVRNMEQR-GVVGTA-S----VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 453 (880)
Q Consensus 388 ~~Li~~~-----~~~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p 453 (880)
..+|+.- ....+ .+.|+.-++.+... +..|.. . ...-.+-++...|++.+++..|+.|.. .+...
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~~~~ 325 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EGYKM 325 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cCCCC
Confidence 1111110 01122 45566666666653 222322 1 122356678899999999999999998 45433
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc-
Q 002795 454 LEITFTGLIISSMDGGHIDDCISIFQHMKDH------CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL- 526 (880)
Q Consensus 454 ~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~------~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l- 526 (880)
-..+-.++.++|...+.+++|..+|..+... .+++......|..+|...+++++|..+++.+.+.. + |..-
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~-p-~~~~~ 403 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT-P-YQVGV 403 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-C-cEEec
Confidence 3457889999999999999999999998662 23355556789999999999999999999999842 2 2111
Q ss_pred -CCCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002795 527 -SGDGAPLKPDEYT-YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI 604 (880)
Q Consensus 527 -~~~~~~~~Pd~~t-~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~ 604 (880)
.+......||-.. +..++..+.-.|++.+|++.++.+.... +-|......+-..+...|.+.+|+..++..... .
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~ 480 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--A 480 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--C
Confidence 1112223344333 3444556677788888888888886532 345777777777788888888888888665543 3
Q ss_pred CC-HHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 605 PH-PLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 605 p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
|+ ..+.......+...|++.+|..+.+...
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 43 3344456666666688888888777765
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=2.9e-11 Score=144.57 Aligned_cols=450 Identities=10% Similarity=0.006 Sum_probs=322.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d-~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
|...| ...+.|++..|+..|+.+++..+. + ..++ .++..+...|+.++|+..+++... ..+........+.
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~----~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA 109 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAGPL----QSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAA 109 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhCcc----chhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHH
Confidence 44444 345889999999999999876542 2 2334 888888999999999999999873 2223344444446
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (880)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (880)
..+...|++++|+++|+++.+. .+-|...+..++..+...++.++|+..+.++... .|+...
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~----------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKK----------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 6888889999999999999986 4556677778888899999999999999999875 566666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY------YEL 425 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~L 425 (880)
+..++..+...++..+|...++++.+.. +-+...+..++.+..+.|-...|.++..+-... ..+...-+ ..+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 6555555555677767999999999985 556888889999999999999999877653311 11111001 111
Q ss_pred HHHH-----HhCCC---HHHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHH
Q 002795 426 ACCL-----CNNGR---WQDAMLVVEKIKSLRHSKPLEI-----TFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGT 491 (880)
Q Consensus 426 i~~~-----~~~g~---~~~A~~l~~~m~~~~~~~p~~~-----t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~ 491 (880)
+..- ....+ .+.|+.-++.+....+..|... ...-.+-++...|++.++++.|+.+.. +.+.-..+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1110 01122 3456666666554333334322 223455678889999999999999997 44445567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----
Q 002795 492 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG---- 567 (880)
Q Consensus 492 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g---- 567 (880)
-..+.++|...+++++|..+|..+...... .....++......|.-++...+++++|..+++.+.+.-
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~--------~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGK--------TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhcccc--------ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 788999999999999999999999774300 00112345556789999999999999999999998731
Q ss_pred ---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCC
Q 002795 568 ---------CQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAP 637 (880)
Q Consensus 568 ---------~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 637 (880)
..|| ...+..++..+...|++.+|++.++.+.... +-|......+...+...|.+.+|...++... .
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~--~ 478 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE--S 478 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--h
Confidence 1222 2234445666789999999999999997743 3466677777888888899999999997766 3
Q ss_pred CccCHH-HHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 002795 638 FHITER-QWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 683 (880)
Q Consensus 638 ~~p~~~-~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~ 683 (880)
+.|+.. +......+....+++.+|..++..+.+.. |++..+..+
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~~~l 523 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRS--PEDIPSQEL 523 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhHHHH
Confidence 466654 34455556778899999999999999888 455555554
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=7.7e-13 Score=137.95 Aligned_cols=483 Identities=12% Similarity=0.101 Sum_probs=323.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC--HHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQM-LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS--RFVYTK 233 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d--~~~~~~ 233 (880)
....|...+..+..+.+|+..|+-+.+...-|+...+ ..+...+.+.+.+.+|...+...+.+-|... .+ ..+.|.
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-k~~rikil~n 281 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-KDMRIKILNN 281 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-hhhHHHHHhh
Confidence 4445666777788899999999998887766666543 3455667788889999999998877654322 22 345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 234 Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+.-.+.+.|.++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|..|...++..-.+-| ..+...|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky---i~~~ddp~ 355 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY---IKEKDDPD 355 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc---cCCcCCcc
Confidence 666778899999999999998874 688777656666666789999999999999876532111111 12224455
Q ss_pred HHHHHHHHHH-----HhcC--CCHHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHHHcCCh
Q 002795 314 LVVYNAVLNA-----CVPS--HQWKGVFWVFKQLRKSGLKPSAAT-------------Y--------GLAMEVMLQSGKY 365 (880)
Q Consensus 314 ~~ty~~ll~~-----~~~~--g~~~~A~~l~~~m~~~g~~pd~~t-------------~--------~~ll~a~~~~g~~ 365 (880)
....|-.|.. .-+. .+.++++-.-.++..--+.|+-.. | ..-..-+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 5554443332 2111 122333332223322222332110 0 1123457899999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002795 366 DLVHEFFRKMAKSGEAIGALTYKVLVRAFWE--EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE 443 (880)
Q Consensus 366 ~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~ 443 (880)
+.|.+++.-..+..-..-...-|.|...+.- ..++..|..+-+.....+-- +......-...-..+|+++.|...++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999999888876533333344444444433 33677787777766644321 22222212223457899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 002795 444 KIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGY 523 (880)
Q Consensus 444 ~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~ 523 (880)
+... ....-....|| +--.+-..|++++|...|-++..-+..+..+.-.+...|-...+...|++++-+....
T Consensus 515 eal~-ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl----- 587 (840)
T KOG2003|consen 515 EALN-NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----- 587 (840)
T ss_pred HHHc-CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----
Confidence 8876 21111112222 2234677899999999998887755678888888888999999999999999877662
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002795 524 TFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGE 603 (880)
Q Consensus 524 ~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~ 603 (880)
+.-|+...+.|...|-+.|+-.+|.+.+-.--. -++.+..+...|...|....-++.+...|++..- +
T Consensus 588 ---------ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 588 ---------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred ---------CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 333788888999999999999999988765432 2456677888888888899999999999997654 5
Q ss_pred CCCHHHHHHHHHHHHHh-CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHH
Q 002795 604 IPHPLFFTEMLIQAIVQ-SNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNAL 668 (880)
Q Consensus 604 ~p~~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~ 668 (880)
.|+..-|..|+..|++. |++.+|+++++...+ .+.-|...+..|++-|...|..+ +.+.-.++
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~d-~key~~kl 719 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD-AKEYADKL 719 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccchh-HHHHHHHH
Confidence 69999999888888776 899999999998864 35556666777778888777654 33333333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=2.3e-10 Score=130.21 Aligned_cols=558 Identities=14% Similarity=0.073 Sum_probs=373.3
Q ss_pred hhhhHHhHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 002795 113 LRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQ 192 (880)
Q Consensus 113 l~~l~e~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~ 192 (880)
.+.+..++..-......++.+.|..++..+|. ..+....+|..|..++-.+|+.++++..+-...... +-|...
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIk-----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~ 209 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIK-----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYEL 209 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHH
Confidence 33477777776666667999999999988888 455667899999999999999999988776655444 567799
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHH-HH----
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA-AY---- 267 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~-t~---- 267 (880)
|..+.....+.|.+++|.-.|.++++..| ++...+-.-+..|-+.|+...|..-|.++... .+|... -+
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i 283 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANP----SNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLI 283 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHH
Confidence 99999999999999999999999998766 45555555667889999999999999999885 333322 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
-.++..+...++-+.|.+.++.....+. ..-+...++.++..+.+..+++.|......+......+
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~--------------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEK--------------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhcc--------------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 2345556667777888888888776331 34455667888888999999999999988887622222
Q ss_pred CHHHH--------------------------HHHHHHHHHcCChHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCC
Q 002795 348 SAATY--------------------------GLAMEVMLQSGKYDLVHEFFRKMAKSG--EAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 348 d~~t~--------------------------~~ll~a~~~~g~~~~A~~l~~~m~~~g--~~~d~~~~~~Li~~~~~~g~ 399 (880)
|..-+ .-++-++.+....+....+...+.+.. +.-+...|.-+..+|...|+
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 22111 112333445555666666666777766 44457788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
+.+|+.+|..+......-+...|..+..+|...|.+++|+..|+.... ..|+. ..-.+|-..+-+.|+.++|.+.+
T Consensus 430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 999999999999887777788899999999999999999999999987 34443 23455666678999999999999
Q ss_pred HHHhh---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---------cCCCCCCCCCCHHHH
Q 002795 479 QHMKD---------HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF---------LSGDGAPLKPDEYTY 540 (880)
Q Consensus 479 ~~m~~---------~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~---------l~~~~~~~~Pd~~t~ 540 (880)
..+.. ...|+........+.|.+.|+.++=+.+-..|+.....-.-. ......+......+.
T Consensus 507 ~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~ 586 (895)
T KOG2076|consen 507 EQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELL 586 (895)
T ss_pred hcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhH
Confidence 98643 245566666677788888999887666655555432100000 000111222334444
Q ss_pred HHHHHHHHHcCCHHHHHH------HHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCH---
Q 002795 541 SSMLEASATAHQWEYFEY------VYKGMALSGCQLDQT--KHAWLLVEASRAGKCHLLEHAFDSLLEAGE--IPHP--- 607 (880)
Q Consensus 541 ~~ll~a~~~~~~~~~A~~------l~~~m~~~g~~pd~~--~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~--~p~~--- 607 (880)
...+.+-.+.++...... .+.--...|+..+.. .+.-++..+++.|++++|+.+...+....+ .++.
T Consensus 587 ~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k 666 (895)
T KOG2076|consen 587 KQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRK 666 (895)
T ss_pred HHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 445555555444222211 111222234555433 456677788899999999999887776432 1222
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhC-CCc--cC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 002795 608 LFFTEMLIQAIVQSNYEKAVALINAMAYA-PFH--IT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 683 (880)
Q Consensus 608 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~--p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~ 683 (880)
..=+.++.+.+..+++..|+..++.|... ++. |. ...|+..++.....++-.--.+++..+...... +.+.. .
T Consensus 667 ~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~-~~~~l--~ 743 (895)
T KOG2076|consen 667 ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKD-DTPPL--A 743 (895)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-CCcce--e
Confidence 12345677777789999999999998743 222 21 224555555555555544444555444444433 11111 1
Q ss_pred HHHHHHHHhccchhhhhhh
Q 002795 684 SRALHALCRSEKERDLSSS 702 (880)
Q Consensus 684 ~~~~~~~~~~g~~~ea~~~ 702 (880)
+...|-+..++.+..|+..
T Consensus 744 ~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 744 LIYGHNLFVNASFKHALQE 762 (895)
T ss_pred eeechhHhhccchHHHHHH
Confidence 1123344455555555443
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.8e-09 Score=111.14 Aligned_cols=495 Identities=11% Similarity=0.064 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
..|-...+-=...+++..|..+|+..+... .-+...|..-+.+=.+......|+.+++.++...|+ --..|-..+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR----VdqlWyKY~ 148 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR----VDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----HHHHHHHHH
Confidence 344444444445666778888888887766 456777888888888888899999999988876553 224566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
.+=-..|++..|.++|++-.+ ..|+...|++.|..=.+...++.|..+|+..+- +.|++.
T Consensus 149 ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----------------~HP~v~ 208 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----------------VHPKVS 208 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------------ecccHH
Confidence 666777999999999998875 579999999999998999999999999999876 679999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcc--HHHHHHHH
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKS-GL-KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG--ALTYKVLV 391 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~-~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d--~~~~~~Li 391 (880)
+|--....-.+.|+...|..+|....+. |- ..+...|.+...-=.++..++.|.-+|...+.. ++.+ ...|....
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHH
Confidence 9988888888899999999999887653 11 012223333333334677788899999888876 3333 44555555
Q ss_pred HHHHhcCCHHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH-------
Q 002795 392 RAFWEEGKINEAVA--------AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI------- 456 (880)
Q Consensus 392 ~~~~~~g~~~~A~~--------~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~------- 456 (880)
..--+-|+...... -|+.+...++. |-.+|--.+..-...|+.+...++|++... +++|-..
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHH
Confidence 55455566443332 24455555533 556677777777788999999999999885 5555321
Q ss_pred HHHHH---HHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 002795 457 TFTGL---IISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS----RNDMFSKAKELFEETTRANSSGYTFLSGD 529 (880)
Q Consensus 457 t~~~l---l~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~----~~g~~~~A~~lf~~m~~~g~~~~~~l~~~ 529 (880)
.|..+ +-.-....+++.++++|+...+-+|....|+.-+--+|+ ++.++..|.+++...+.
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG------------ 432 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG------------ 432 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc------------
Confidence 12111 111234688899999999988877777777777666665 56788899999888765
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 002795 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAG-EIPHP 607 (880)
Q Consensus 530 ~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g-~~p~~ 607 (880)
.-|-..+|...|..=.+.+.++.+..++++.++- .|. -.++......=...|+.+.|..+|....... +....
T Consensus 433 ---~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 433 ---KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred ---cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 4588889988888888889999999999998864 443 4555555544567899999999999877642 33455
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH--Hh---hhcc-----------CHHHHHHHHHHHHhC
Q 002795 608 LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE--SN---EDRI-----------SRDKLEKLLNALCNC 671 (880)
Q Consensus 608 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~--a~---~~~~-----------~~~~a~~l~~~~~~~ 671 (880)
..|-..|.-=...|.+++|..+++++++.. +....|.++-. +. .+.+ ....|.++|+.....
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 677777777777899999999999987543 23335655433 11 1222 344677777664432
Q ss_pred --CCCCChhhHHHHHHHHHHHHhccchhh
Q 002795 672 --NAASSEITVSNLSRALHALCRSEKERD 698 (880)
Q Consensus 672 --~~~p~~~~~~~~~~~~~~~~~~g~~~e 698 (880)
...|..--+.-+-.+.+.-...|...+
T Consensus 586 ~k~~~~KeeR~~LLEaw~~~E~~~G~~~d 614 (677)
T KOG1915|consen 586 LKESTPKEERLMLLEAWKNMEETFGTEGD 614 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHhcCchhh
Confidence 111223333334444554455554433
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=1.6e-09 Score=123.60 Aligned_cols=483 Identities=11% Similarity=0.074 Sum_probs=334.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
..++.+..+|++++|..++.+.++.. +.....|.+|...|-..|+.+++...+-.+-...+ .|...|..+.....
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p----~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP----KDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC----CChHHHHHHHHHHH
Confidence 33455666799999999999999887 67889999999999999999999988766654443 56688999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHH-
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN- 318 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~- 318 (880)
+.|++..|.-.|.+..+. -+++...+---...|-+.|+...|...|.++.... ++.|..-+-
T Consensus 219 ~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---------------p~~d~er~~d 281 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---------------PPVDIERIED 281 (895)
T ss_pred hcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---------------CchhHHHHHH
Confidence 999999999999999984 45555555556677899999999999999998863 222222222
Q ss_pred ---HHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------------
Q 002795 319 ---AVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG--------------- 379 (880)
Q Consensus 319 ---~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g--------------- 379 (880)
.++..+...++-+.|.+.+...... +-.-+..+++.++..+.+...++.|......+....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 3455566777779999988887652 223355667888888888889998888877776621
Q ss_pred ------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 380 ------------EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG--VVGTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 380 ------------~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
+.++..++ -++-++......+....+.......+ +.-+...|.-+..+|...|++.+|+.+|..+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22233331 12233334444445555555556666 3334567888999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Q 002795 446 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 525 (880)
Q Consensus 446 ~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~ 525 (880)
.. ....-+...|-.+..+|...|..+.|.+.|+......+-+...--+|-..|-+.|+.++|.+.+..|..-+.
T Consensus 441 ~~-~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~----- 514 (895)
T KOG2076|consen 441 TN-REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG----- 514 (895)
T ss_pred hc-CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc-----
Confidence 98 444455778999999999999999999999999987777788888888999999999999999998763210
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----------------------CCCHHHHHHHHHHHH
Q 002795 526 LSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGC----------------------QLDQTKHAWLLVEAS 583 (880)
Q Consensus 526 l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~----------------------~pd~~~~~~ll~~~~ 583 (880)
.........|+..........+...|+.++-..+-..|+.... .-.......++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 0001222445555556666777788888887776666654211 111122223333333
Q ss_pred HcCCHHHHHHHHH------HHHHCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCc--cCH---HHHHHHHH
Q 002795 584 RAGKCHLLEHAFD------SLLEAGEIPHP--LFFTEMLIQAIVQSNYEKAVALINAMAYAPFH--ITE---RQWTELFE 650 (880)
Q Consensus 584 ~~G~~~~A~~~~~------~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~--p~~---~~~~~ll~ 650 (880)
+.++....+.... .-...|+.-+. ..+..++..+++.+.+++|+.+...+....+. ++. ..-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 3333222222211 11112322221 13345567788889999999999998754432 222 11234455
Q ss_pred HhhhccCHHHHHHHHHHHHhC
Q 002795 651 SNEDRISRDKLEKLLNALCNC 671 (880)
Q Consensus 651 a~~~~~~~~~a~~l~~~~~~~ 671 (880)
++...+++..+...+..|+..
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHH
Confidence 667888999999998888876
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=5.3e-11 Score=124.44 Aligned_cols=440 Identities=11% Similarity=0.055 Sum_probs=291.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC---
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--- 263 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~-~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd--- 263 (880)
.+..++..|...|.......+|+..++.+++...- |+. ..--.+.+.+.+.+.+.+|+++|+..... .|+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf---~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink 272 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMF---PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINK 272 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhccccc---CCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccch
Confidence 45556666777777778888999999988765432 332 22234556778889999999999887763 232
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002795 264 ---IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (880)
Q Consensus 264 ---~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m 340 (880)
....+.+...+.+.|.++.|...|+...+ ..||..+--.|+-++..-|+.++..+.|.+|
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~-----------------~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kl 335 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCME-----------------EAPNFIAALNLIICAFAIGDAEKMKEAFQKL 335 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHH-----------------hCccHHhhhhhhhhheecCcHHHHHHHHHHH
Confidence 33456666678899999999999999887 5688777666677777789999999999999
Q ss_pred HHCCCCCC------------HHHHHHHH-----HHHHHcCC--hHHHHHHHHHHHHcCCCccHH-------------HHH
Q 002795 341 RKSGLKPS------------AATYGLAM-----EVMLQSGK--YDLVHEFFRKMAKSGEAIGAL-------------TYK 388 (880)
Q Consensus 341 ~~~g~~pd------------~~t~~~ll-----~a~~~~g~--~~~A~~l~~~m~~~g~~~d~~-------------~~~ 388 (880)
..-...|| ....+..| .-+-+..+ -+++.-.-.+++.--+.|+-. .+.
T Consensus 336 i~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~ 415 (840)
T KOG2003|consen 336 IDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHA 415 (840)
T ss_pred hcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhh
Confidence 76433333 22222222 11211111 111211111222111222210 000
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh-CCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 002795 389 --------VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL-CN-NGRWQDAMLVVEKIKSLRHSKPLEITF 458 (880)
Q Consensus 389 --------~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~-~~-~g~~~~A~~l~~~m~~~~~~~p~~~t~ 458 (880)
.-..-|.++|+++.|+++++-....+-..-...-+.|...+ .+ ..++.+|..+-+.... ..+-+....
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~ 493 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAAL 493 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHh
Confidence 11234779999999999999988776543333333332222 23 3467778777776654 222333333
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH
Q 002795 459 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY 538 (880)
Q Consensus 459 ~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~ 538 (880)
+.--+.....|++++|...|.+.......-....-.+.-.+-..|+.++|++.|-++... +.-+..
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i--------------l~nn~e 559 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--------------LLNNAE 559 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--------------HHhhHH
Confidence 333334456899999999999988742222223333444567789999999999988763 345777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002795 539 TYSSMLEASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQ 616 (880)
Q Consensus 539 t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~p-d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 616 (880)
....+...|-...+..+|.+++-+.. .+.| |+.+...|...|-+.|+-..|.+.+-.-- ..-| +..+.. .+.+
T Consensus 560 vl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~ie-wl~a 634 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIE-WLAA 634 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHH-HHHH
Confidence 88888899999999999999986654 3445 58889999999999999999888754322 2334 333443 4555
Q ss_pred HHHh-CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHh-hhccCHHHHHHHHHHHHhCCC
Q 002795 617 AIVQ-SNYEKAVALINAMAYAPFHITERQWTELFESN-EDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 617 ~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~-~~~~~~~~a~~l~~~~~~~~~ 673 (880)
|+-. .-+++|+.+|++.. -+.|+..-|..++..| .+.|++.+|..+++.....=+
T Consensus 635 yyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 5544 55899999999875 5799999999998876 568999999999998776543
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=6.3e-09 Score=110.24 Aligned_cols=441 Identities=10% Similarity=0.098 Sum_probs=328.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-HHH
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAA 266 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd-~~t 266 (880)
.+...|..-.+.=..++++..|+.+|+.++... ..+...|-..+.+=.++..+..|..++++.... -|- ...
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdql 143 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQL 143 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHH
Confidence 455566666666667788999999999997543 367789999999999999999999999998873 343 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 002795 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (880)
Q Consensus 267 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (880)
|---+..=-..|++..|.++|+.-.. -.|+...|++.|+.-.+...++.|..+|+...- +.
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~-----------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~H 204 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWME-----------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VH 204 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHc-----------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ec
Confidence 44445555667999999999999887 689999999999999999999999999999875 35
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 002795 347 PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS-G-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA-SVYY 423 (880)
Q Consensus 347 pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~-g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 423 (880)
|++.+|--....=-+.|....+..+|...++. | -..+...+++...--.++..++.|.-+|+-.+++-+.... ..|.
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k 284 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYK 284 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999988888888999999999999988765 2 1122345555555556678899999999988876444322 3333
Q ss_pred HHHHHHHhCCC---HHHHHHH-----HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH--HHHH
Q 002795 424 ELACCLCNNGR---WQDAMLV-----VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI--GTVN 493 (880)
Q Consensus 424 ~Li~~~~~~g~---~~~A~~l-----~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~--~~~~ 493 (880)
....-=-+-|+ +++++.- ++.+.. ....|-.+|--.+..-...|+.+..+++|+....+++|-. ..|.
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~--~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS--KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH--hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 33332234454 3444332 223333 2334556777777777888999999999999999888842 2233
Q ss_pred HHHHH--------HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 002795 494 AMLKV--------YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT----AHQWEYFEYVYK 561 (880)
Q Consensus 494 ~Li~~--------~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~----~~~~~~A~~l~~ 561 (880)
-.|.. =....+.+.+.++|+..++. +.-...||.-+--.|++ +.++..|.+++.
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--------------IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL--------------IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------cCcccchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 22222 12467899999999999984 33356777776666654 488999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCC-cc
Q 002795 562 GMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPF-HI 640 (880)
Q Consensus 562 ~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~p 640 (880)
..+ |.-|...+|...|..=.+.+.++....++++.++-+ +-+..+|......=-..|+.+.|..+|+-....+. ..
T Consensus 429 ~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 429 NAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 877 789999999999999899999999999999999865 22455666554444455999999999998875543 33
Q ss_pred CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCC
Q 002795 641 TERQWTELFESNEDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 641 ~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~ 673 (880)
....|-+.+.--...+..+.+..+++.+++...
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 445666666666678899999999999998764
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=4.1e-08 Score=107.96 Aligned_cols=464 Identities=10% Similarity=0.041 Sum_probs=303.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CcCCCCCCCHHHHHHHHHHHHHc
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYG-LKDKRDLKSRFVYTKLLAILGKA 241 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~-~~~~~~~~d~~~~~~Ll~~~~~~ 241 (880)
-+|.+-.-|+.|..++....+ .++-+...|.+....=-..|+.+....+.++-+. ....+...+...|-.=...|-..
T Consensus 414 lAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 344455566777777776654 3466667776666666677777776666654322 22234445666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHH
Q 002795 242 GRPHEALRIFNLMLEDCNLYP--DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (880)
Q Consensus 242 g~~~~A~~lf~~m~~~~g~~p--d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ 319 (880)
|.+--+..+......- |+.- --.||+.-...|.+.+.++-|..+|....+. .+.+...|..
T Consensus 493 gsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv----------------fp~k~slWlr 555 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----------------FPCKKSLWLR 555 (913)
T ss_pred CChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----------------ccchhHHHHH
Confidence 7777777776666653 3322 2456777777777777777777777777765 5566667777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 002795 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 320 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~ 399 (880)
....--..|..++-..+|++....- +-....|-....-+...|++..|+.++....+.. +.+...|-+-+..-..+..
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcccc
Confidence 6666666777777777777776652 2234445555555667777777777777777764 3356777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
++.|..+|.+.... .|+...|.--+...--.+..++|++++++..+ ..|+- ..|..+-+.+-+.++++.|+..|
T Consensus 634 ~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk---~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 634 LERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK---SFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred HHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH---hCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 78888777776553 34555555555555566777777777777765 44544 34556666777777788888777
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 002795 479 QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFE 557 (880)
Q Consensus 479 ~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~ 557 (880)
..-.+.++..+-.|-.|...=-+.|.+-.|..+|++..-.+ | |...|-..|+.=.+.|+.+.|.
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---------------Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---------------PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---------------CCcchhHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777777777777778888887777654 4 6667777777777788888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCC
Q 002795 558 YVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAP 637 (880)
Q Consensus 558 ~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 637 (880)
.++.+..+. ++.+...|..-|.+..+.++-..+.+.+.+ ... |+...-.+...+....++++|.+.|.+...
T Consensus 774 ~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk---ce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk-- 845 (913)
T KOG0495|consen 774 LLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK---CEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVK-- 845 (913)
T ss_pred HHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh---ccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 777776653 444556666666666666664444444333 222 222333355555566778888888877763
Q ss_pred CccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 638 FHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 638 ~~p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
+-|| -.+|.-++.-+..+|.-+.-..++..+..+.+.
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 2333 346777777777777777777777777766643
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=2.8e-08 Score=109.18 Aligned_cols=358 Identities=9% Similarity=0.049 Sum_probs=155.5
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCCHHHHHHHHHHHHhc
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM----LEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m----~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
+..-++.|..++..+.+.-+ .+..+|.+-...=-.+|+.+...+++++- ... |+..+...|-.=...|-..
T Consensus 418 rLetYenAkkvLNkaRe~ip----td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIP----TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhc
Confidence 33344445555444433222 34444444444444445554444444332 222 4444444444444444444
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 357 (880)
|..-.+..+.......|.. ..---.||+.--..|.+.+.++-|..+|...++.- .-+...|..+..
T Consensus 493 gsv~TcQAIi~avigigvE-------------eed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~ 558 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVE-------------EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAM 558 (913)
T ss_pred CChhhHHHHHHHHHhhccc-------------cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHH
Confidence 5444444444444444310 11223344444444555555555555554444321 112333333333
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002795 358 VMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 437 (880)
Q Consensus 358 a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 437 (880)
.=-..|..+.-..+|++.+.. ++-....|-....-+...|++..|..++....+.+.. +...|-.-+.....+..++.
T Consensus 559 ~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHH
Confidence 333444444555555544443 1223334444444444445555555555544444332 33334444444445555555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 438 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 438 A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
|..+|.+... ..|+...|.--+...--.++.++|.+++++..+..+.=...|-.+.+.+-+.++.+.|.+.|..-.+
T Consensus 637 aR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 637 ARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 5555544433 3334434333333333344455555555444443333344444444445555555555554444333
Q ss_pred cCCCCccccCCCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002795 518 ANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFD 596 (880)
Q Consensus 518 ~g~~~~~~l~~~~~~~~Pd~-~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~ 596 (880)
. -|+. -.|..+...=-+.|++-.|..++.+....+ +-+...|...|.+=.+.|+.+.|..+..
T Consensus 714 ~---------------cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 714 K---------------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred c---------------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2322 233333333333344555555554444322 1234444444555455555555554444
Q ss_pred HHH
Q 002795 597 SLL 599 (880)
Q Consensus 597 ~m~ 599 (880)
+..
T Consensus 778 kAL 780 (913)
T KOG0495|consen 778 KAL 780 (913)
T ss_pred HHH
Confidence 433
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.9e-08 Score=103.73 Aligned_cols=254 Identities=13% Similarity=0.095 Sum_probs=132.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCH
Q 002795 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKI 400 (880)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~ 400 (880)
++-...+.++++.-.......|+.-+...-+-...+.....++++|+.+|+++.+... --|..+|+.++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444445555555555555555543333333333333455566666666666666531 12445555544332221111
Q ss_pred H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 401 N-EAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 401 ~-~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
. -|..++. -....| .|...+..-|+-.++.+.|...|++..+ ..|.. ..|+.+.+-|....+...|+.-+
T Consensus 316 s~LA~~v~~---idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 316 SYLAQNVSN---IDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHH---hccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1 1111111 011122 2333344445555566666666666655 33333 34555555566666666666666
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 002795 479 QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFE 557 (880)
Q Consensus 479 ~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~ 557 (880)
+...+-++.|-..|-.|.++|.-.+...-|+-.|++... ++| |...|.+|..+|.+.++.++|.
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---------------~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---------------LKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---------------cCCCchHHHHHHHHHHHHhccHHHHH
Confidence 666665556666666666666666666666666666655 345 5556666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 558 YVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 600 (880)
Q Consensus 558 ~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~ 600 (880)
..|......| ..+...+..|...|-+.++.++|...|.+..+
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666665544 22445556666666666666666666654443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=4e-09 Score=118.60 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHH--HHHHHHHhcCCHHHHH
Q 002795 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYK--VLVRAFWEEGKINEAV 404 (880)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~--~Li~~~~~~g~~~~A~ 404 (880)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887765542122 223444455558999999999999999885 35543332 3467889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 405 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE------ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 405 ~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~------~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
..++++.+.++. +...+..+...|.+.|++++|..++..+.+.....+.. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999988754 56668889999999999999999999999833332322 23444555555566677788888
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002795 479 QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEY 558 (880)
Q Consensus 479 ~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~ 558 (880)
+.+.+..+.++.....+...+...|+.++|..++++..+. .||.... ++.+....++.+++.+
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---------------~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---------------QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------CCCHHHH--HHHhhccCCChHHHHH
Confidence 8887766778999999999999999999999999999884 3665322 3334445589999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 559 VYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 559 l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
..+...+. .|+ ...+.++-..|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++-.
T Consensus 316 ~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 316 VLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988864 444 666778888899999999999999999885 4999888888888888999999999998764
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=4.8e-09 Score=117.93 Aligned_cols=281 Identities=11% Similarity=0.085 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHH-
Q 002795 241 AGRPHEALRIFNLMLEDCNLYPDIAA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN- 318 (880)
Q Consensus 241 ~g~~~~A~~lf~~m~~~~g~~pd~~t-~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~- 318 (880)
.|+++.|.+.+....+. .+++.. |........+.|+++.|...|.++.+ ..|+...+-
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~-----------------~~~~~~~~~~ 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAE-----------------LADNDQLPVE 156 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------------cCCcchHHHH
Confidence 46666666555554442 111222 22223333555666666666666654 233332222
Q ss_pred -HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH-------HHHHHH
Q 002795 319 -AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA-------LTYKVL 390 (880)
Q Consensus 319 -~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~-------~~~~~L 390 (880)
.....+...|+++.|...++++.+.. +-+...+..+...|.+.|+++.|..++..+.+.+..++. .+|..+
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 22334555666666666666665543 113445555556666666666666666666655432111 122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
+.......+.+...++++.+.+.- ..+......+...+...|+.++|..++.+..+ ..|+.. ..++.+....++
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~ 309 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNN 309 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCC
Confidence 222223333344444444433221 22334444455555555555555555555443 122221 111222223355
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
.+++....+...+..+-|...+.++...|.+.+++++|.+.|+...+ ..|+..+|..+...+...
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---------------~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---------------QRPDAYDYAWLADALDRL 374 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------cCCCHHHHHHHHHHHHHc
Confidence 55555555555444444444555555555555555555555555554 235555555555555555
Q ss_pred CCHHHHHHHHHHH
Q 002795 551 HQWEYFEYVYKGM 563 (880)
Q Consensus 551 ~~~~~A~~l~~~m 563 (880)
|+.++|.+++++-
T Consensus 375 g~~~~A~~~~~~~ 387 (398)
T PRK10747 375 HKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.9e-08 Score=103.72 Aligned_cols=381 Identities=11% Similarity=0.017 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 002795 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (880)
Q Consensus 187 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t 266 (880)
.-|...+-.....+.+.|....|...|-.++...| +.|.+-+....-.-+.+.+..+...+..+ +...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-------~~W~AWleL~~lit~~e~~~~l~~~l~~~-----~h~M 228 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-------WFWSAWLELSELITDIEILSILVVGLPSD-----MHWM 228 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-------cchHHHHHHHHhhchHHHHHHHHhcCccc-----chHH
Confidence 45555555555566677888888888887765332 23444333322233333333332222210 1111
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 002795 267 Y-HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (880)
Q Consensus 267 ~-~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 345 (880)
- -.+..++......++++.-.......| .+-+...-+-...+.-...++++|+.+|+++.+...
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~g---------------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP 293 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVG---------------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP 293 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 1 123445666667788888777777765 444443333333445677899999999999998732
Q ss_pred C--CCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 346 K--PSAATYGLAMEVMLQSGKYD-LVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 422 (880)
Q Consensus 346 ~--pd~~t~~~ll~a~~~~g~~~-~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 422 (880)
- -|..+|+.++-+--...++. .|..++ .+-+ --+.|+..+.+-|+-.++.++|+.+|+..++.+.. ....|
T Consensus 294 YRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aW 367 (559)
T KOG1155|consen 294 YRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAW 367 (559)
T ss_pred CcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHH
Confidence 1 27889998885544433332 222222 1222 23568888999999999999999999999998865 45569
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 002795 423 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN 502 (880)
Q Consensus 423 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~ 502 (880)
+.|..-|....+...|+.-++...+ -.+.|-..|-.|.++|.-.+...-|.-+|++...--|.|...|.+|..+|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999987 23345678999999999999999999999999887778999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHH--HH
Q 002795 503 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLDQTK--HA 576 (880)
Q Consensus 503 g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~----g~~pd~~~--~~ 576 (880)
++.++|++.|......| ..+...+..+.+.|-+.++.++|.+.|.+-++. |..-+... ..
T Consensus 446 ~~~~eAiKCykrai~~~--------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLG--------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred ccHHHHHHHHHHHHhcc--------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 99999999999999875 346688999999999999999999999887653 33322222 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 577 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 577 ~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
.|-.-+.+.+++++|...-...... .-..++|..+++++.
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~~~~~------------------~~e~eeak~LlReir 551 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATLVLKG------------------ETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhcC------------------CchHHHHHHHHHHHH
Confidence 2333356778877776544332221 123677888887765
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=2.6e-09 Score=120.94 Aligned_cols=132 Identities=9% Similarity=-0.113 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
Q 002795 540 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPHPLFFTEMLIQA 617 (880)
Q Consensus 540 ~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~ 617 (880)
-+.++..|.+..+..+++..-+.....-+ ...|..||.-+.+..+.+.|....++.... .+.-|..-+..+...+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 45556666666666666544333322111 266889999999999999999998887653 3445666778888888
Q ss_pred HHhCCHHHHHHHHHHhhhCC-CccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 618 IVQSNYEKAVALINAMAYAP-FHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 618 ~~~g~~~~A~~l~~~m~~~~-~~p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
.+.+....+..++.+|...- ..|+ ..++-.++......|+.+...++++.+...|+.
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 88899999999999987421 2232 334556777778889999999999888877765
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=4.6e-09 Score=118.75 Aligned_cols=293 Identities=11% Similarity=0.014 Sum_probs=204.3
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCC
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQVGL 279 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~--~t~~~ll~~~~~~g~ 279 (880)
..|+++.|.+.+....+..+ .....+-....++...|+++.|...|.+..+. .|+. ...-.....+...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~----~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAA----EPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCC
Confidence 56888888888887755432 12344555566777889999999999888764 3443 233334677788899
Q ss_pred HHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVM 359 (880)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 359 (880)
++.|...++.+.+. .+.+...+..+...|...|++++|..++..+.+.++.+.......-..++
T Consensus 169 ~~~Al~~l~~l~~~----------------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 169 LHAARHGVDKLLEM----------------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999998886 34566778888888999999999999999998887543322211111211
Q ss_pred ---HHcCChHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhC
Q 002795 360 ---LQSGKYDLVHEFFRKMAKSGE---AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY-YELACCLCNN 432 (880)
Q Consensus 360 ---~~~g~~~~A~~l~~~m~~~g~---~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~Li~~~~~~ 432 (880)
...+..+.+...+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+ ..........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence 222233333344444444321 137888889999999999999999999999987654332211 1122223456
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKEL 511 (880)
Q Consensus 433 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~l 511 (880)
++.+.+...++...+.....|+.....++-..|.+.|++++|.+.|+.... ...|+...+..+...+.+.|+.++|.++
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888999888877333333224456788889999999999999996444 3468888899999999999999999999
Q ss_pred HHHHHH
Q 002795 512 FEETTR 517 (880)
Q Consensus 512 f~~m~~ 517 (880)
+++...
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 998654
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=7e-09 Score=117.26 Aligned_cols=289 Identities=12% Similarity=0.052 Sum_probs=197.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 239 GKAGRPHEALRIFNLMLEDCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 239 ~~~g~~~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
...|+++.|.+.+....+. .|+. ..+-....++.+.|+.+.|...+.+..+.. ..++....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---------------p~~~l~~~ 156 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---------------GNDNILVE 156 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CcCchHHH
Confidence 4579999999999887763 4553 344455667788899999999999987642 22223334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH---
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF--- 394 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~--- 394 (880)
-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|.+++..+.+.+..+.......-..++
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445677888999999999999998875 2256678888899999999999999999999887433222211111222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhC
Q 002795 395 WEEGKINEAVAAVRNMEQRGVV---GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT---FTGLIISSMDG 468 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t---~~~ll~a~~~~ 468 (880)
...+..+.+.+.+..+...... .+...+..+...+...|+.++|..++++..+ ..|+... ...........
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCC
Confidence 2233333334455555544321 2667777788888899999999999888877 3344432 11111222345
Q ss_pred CCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHHcCCCCccccCCCCCCCCCCHHHHHHHH
Q 002795 469 GHIDDCISIFQHMKDHCEPNI--GTVNAMLKVYSRNDMFSKAKELFEE--TTRANSSGYTFLSGDGAPLKPDEYTYSSML 544 (880)
Q Consensus 469 g~~~~A~~i~~~m~~~~~pd~--~~~~~Li~~~~~~g~~~~A~~lf~~--m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll 544 (880)
++.+.+...++...+..+-|. ....++...|.+.|++++|.+.|+. ..+ ..||...+..+.
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---------------~~p~~~~~~~La 377 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---------------EQLDANDLAMAA 377 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---------------cCCCHHHHHHHH
Confidence 677777777777766555555 6677888888888888888888884 444 458888788888
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002795 545 EASATAHQWEYFEYVYKGMA 564 (880)
Q Consensus 545 ~a~~~~~~~~~A~~l~~~m~ 564 (880)
..+.+.|+.++|.+++++..
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888887643
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=1.3e-11 Score=132.21 Aligned_cols=261 Identities=15% Similarity=0.149 Sum_probs=98.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGL-MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~ 238 (880)
.+...+.+.|++++|+++++....... +.+..-|..+...+...++++.|...++.++..+. .+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK----ANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccc-
Confidence 557777788888888888855443331 33444444455566667888888888888876543 244566677766
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHH
Q 002795 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318 (880)
Q Consensus 239 ~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~ 318 (880)
...+++++|.+++....++ .++...+..++..+.+.++++++..+++.+..... .+.+...|.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~ 150 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWL 150 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHH
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHH
Confidence 6778888888888776554 35666677777778888888888888888765421 356777777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKP-SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 319 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
.+...+.+.|+.++|+.+|++..+. .| |....+.++..+...|+.+++..++....+.. +.|...+..+..+|...
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccc
Confidence 7778888888888888888888765 34 46667777777888888888888877777664 45566777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002795 398 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 398 g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~ 446 (880)
|+.++|..+|++....+.. |..+...+..++...|+.++|..+.++..
T Consensus 228 g~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 8888888888887775532 56666677788888888888887776654
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=1.6e-11 Score=131.61 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
.+...+.+.|++++|+++++..... ..+|+. ..|..+...+...++++.|...++++...+ +
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----------------~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----------------K 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc----------------c
Confidence 4466667777888888877554432 113433 334444445556677788888887777653 2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCccHHHHHHH
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-EAIGALTYKVL 390 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-~~~d~~~~~~L 390 (880)
-+...+..++.. ...+++++|..++....+. .++...+..++..+.+.++++.+..+++.+.... .+.+...|..+
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 244556666665 5777788888777766543 2455566677777778888888888887766543 34567777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
...+.+.|+.++|++.|++..+..+. +....+.++..+...|+.+++..++....... ..+...+..+..+|...|+
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccc
Confidence 78888888888888888888776543 45566777777888888888777777776622 2333455677777778888
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
.++|..+|+......+.|..+...+.+++.+.|+.++|..+..+...
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888888887776666788888888888888888888888776544
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=6.1e-10 Score=123.38 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=207.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 002795 170 MTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH-EAL 248 (880)
Q Consensus 170 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~-~A~ 248 (880)
...+|+.+|..+.. .+.-+......+..+|-..+++++|.++|+.+.+..+.. ..+..+|.+.+..+-+.-... -|.
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-v~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-VKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45678888888443 335566778888889999999999999999887766543 357778888876554322111 122
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC
Q 002795 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH 328 (880)
Q Consensus 249 ~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g 328 (880)
.+.+.++ -.+.||.++..+|.-+++.+.|++.|++..+. .+....+|+.+..-++...
T Consensus 412 ~Li~~~~------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----------------dp~faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 412 DLIDTDP------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----------------DPRFAYAYTLLGHESIATE 469 (638)
T ss_pred HHHhhCC------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----------------CCccchhhhhcCChhhhhH
Confidence 3333322 35778889999998889999999999888874 3347788888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 002795 329 QWKGVFWVFKQLRKSGLKPSAATYG---LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVA 405 (880)
Q Consensus 329 ~~~~A~~l~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~ 405 (880)
.++.|...|+..+. .|...|+ .+.-.|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.++|+.
T Consensus 470 e~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 470 EFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHH
Confidence 88889888888764 3444444 46667888888999998888888876 5567777778888888889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 406 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 406 ~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
+|++....+......-| ..+..+...+++++|+..+++++. +.|+. ..|..+...|-+.|+.+.|..-|..+.+
T Consensus 545 ~~~~A~~ld~kn~l~~~-~~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKY-HRASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhcCCCCchhHH-HHHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99888877765333333 356667788888888888888887 55665 4566777888888888888888888776
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=1.2e-09 Score=123.58 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=149.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCC
Q 002795 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (880)
Q Consensus 250 lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~ 329 (880)
++-.+... |+.|+.+||..+|.-||..|+++.|- +|.-|.... .+.+...|+.++.+....++
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks---------------Lpv~e~vf~~lv~sh~~And 74 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS---------------LPVREGVFRGLVASHKEAND 74 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc---------------ccccchhHHHHHhccccccc
Confidence 44455555 88888888888888888888888887 888887765 67778888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 330 WKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409 (880)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~ 409 (880)
.+.+. .|...||..|+.+|...||+.. |+...+ -.-.++..+...|.......++..
T Consensus 75 ~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k 131 (1088)
T KOG4318|consen 75 AENPK-----------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMK 131 (1088)
T ss_pred ccCCC-----------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhh
Confidence 77765 6778888888888888888655 222111 011122223333333333333332
Q ss_pred HH-HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCC
Q 002795 410 ME-QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEP 487 (880)
Q Consensus 410 m~-~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~-~~p 487 (880)
+. ..+..||..+ .+......|.++.+++++..+.......|..+ +++-+... .....++....+.. -.|
T Consensus 132 ~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 132 IHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred cccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCC
Confidence 21 2233343332 23334444555555555544433222222222 12222221 11222222222221 136
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002795 488 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567 (880)
Q Consensus 488 d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g 567 (880)
+..+|.+++.+-..+|+.+.|..++.+|.+.| +..+..-|..+|-+ .++...+..+++-|...|
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-------------fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g 266 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-------------FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG 266 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-------------CCcccccchhhhhc---CccchHHHHHHHHHHHhc
Confidence 66666666666666666666666666666665 33344444444433 555555666666666666
Q ss_pred CCCCHHHHHHHHHHHHH
Q 002795 568 CQLDQTKHAWLLVEASR 584 (880)
Q Consensus 568 ~~pd~~~~~~ll~~~~~ 584 (880)
+.|+..|+.-.+..+..
T Consensus 267 v~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 267 VQPGSETQADYVIPQLS 283 (1088)
T ss_pred CCCCcchhHHHHHhhhc
Confidence 66666665555444444
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=2.1e-06 Score=94.87 Aligned_cols=488 Identities=10% Similarity=0.098 Sum_probs=305.4
Q ss_pred hhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002795 134 LGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVL 213 (880)
Q Consensus 134 ~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 213 (880)
.-+..|+..++.- ........|...+..+...+..+-++.+|+.-.+. ++..-+--|..++..+++++|.+.+
T Consensus 120 ~tR~tfdrALraL---pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 120 RTRRTFDRALRAL---PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred HHHHHHHHHHHhC---chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHH
Confidence 3455666655522 22223346677777888888888899999887753 4555778889999999999999999
Q ss_pred HHHHhCcCC---CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 002795 214 DWVYGLKDK---RDLKSRFVYTKLLAILGKAGRPH---EALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQVGLLKELVK 285 (880)
Q Consensus 214 ~~~~~~~~~---~~~~d~~~~~~Ll~~~~~~g~~~---~A~~lf~~m~~~~g~~pd~--~t~~~ll~~~~~~g~~~~A~~ 285 (880)
..+++...- ....+...|+-+-...+++-+.- ....+++.+..+ -+|. ..|++|...|.+.|.+++|..
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 988764221 12245567888777777664433 233455555543 4564 568999999999999999999
Q ss_pred HHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhc----------------CC------CHHHHHHHHHHHHHC
Q 002795 286 LIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----------------SH------QWKGVFWVFKQLRKS 343 (880)
Q Consensus 286 l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~----------------~g------~~~~A~~l~~~m~~~ 343 (880)
+|++..+.- ..+.-|+.+.++|++ .+ +++-.+.-|+.+...
T Consensus 270 vyeeai~~v-----------------~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 270 VYEEAIQTV-----------------MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHhh-----------------eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999987642 122223333333332 11 122233344444332
Q ss_pred CC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------cHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 344 GL-----------KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAI------GALTYKVLVRAFWEEGKINEAVAA 406 (880)
Q Consensus 344 g~-----------~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~------d~~~~~~Li~~~~~~g~~~~A~~~ 406 (880)
+. .-++.+|..-+. ...|+..+....|.+.++. +.| -...|..+...|...|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 10 112222322222 2346667777788777765 222 245788899999999999999999
Q ss_pred HHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-----------------CHHHHHHHHHHHH
Q 002795 407 VRNMEQRGVVGT---ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-----------------LEITFTGLIISSM 466 (880)
Q Consensus 407 ~~~m~~~g~~p~---~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p-----------------~~~t~~~ll~a~~ 466 (880)
|++...-..+-- ..+|-.-...=.+..+++.|+.+.+..... ...| +...|...++.--
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 999876544321 234444445555778889999988776541 1111 1123444455555
Q ss_pred hCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHH
Q 002795 467 DGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSM 543 (880)
Q Consensus 467 ~~g~~~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~l 543 (880)
..|-++....+|+.+.+- ..|-++. ...-.+-.+.-++++.++|++-+..= -.|++. .|+..
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LF-------------k~p~v~diW~tY 553 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLF-------------KWPNVYDIWNTY 553 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccC-------------CCccHHHHHHHH
Confidence 678899999999999883 3443322 12222445667888998888755531 124543 67776
Q ss_pred HHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 002795 544 LEASATA---HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA--SRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQ 616 (880)
Q Consensus 544 l~a~~~~---~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~--~~~G~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~ 616 (880)
+.-+.+. ..++.|..+|++.++ |++|...-+--|+.+- -+.|....|+.++++.... +.+. ...||..|.-
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 6665554 568999999999998 7777654444443331 2568888999999986553 3332 3477777776
Q ss_pred HHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH---HhhhccCHHHHHHHHHHHHhC
Q 002795 617 AIVQSNYEKAVALINAMAYAPFHITERQWTELFE---SNEDRISRDKLEKLLNALCNC 671 (880)
Q Consensus 617 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~---a~~~~~~~~~a~~l~~~~~~~ 671 (880)
....=.......++++..+. -|+...-...|+ --.+.|.+++|..++....+.
T Consensus 632 aae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 632 AAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 66654455555666666643 566555444444 234678889999998876654
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=6e-06 Score=91.29 Aligned_cols=507 Identities=10% Similarity=0.065 Sum_probs=290.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQ-SGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
|-..+..+..++++..-...|+.... ..+.-....|...+......+-++.+..++++.++..| ..-+-.|.
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P-------~~~eeyie 177 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP-------EAREEYIE 177 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH-------HHHHHHHH
Confidence 33444444455555554444444332 11122223444455555555555555555555544322 23444445
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 237 ILGKAGRPHEALRIFNLMLEDC-----NLYPDIAAYHSVAVTLGQVGLLK---ELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~-----g~~pd~~t~~~ll~~~~~~g~~~---~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
.+++.++.++|-+.+.....+. .-+.+...|+-+-...++.-+.- ....+++.+...-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf-------------- 243 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF-------------- 243 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--------------
Confidence 5555555555555555443220 01112223333333333322111 1112222222211
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------C------ChH
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS----------------G------KYD 366 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----------------g------~~~ 366 (880)
...=...|++|...|.+.|.+++|..+|++....- .++.-|+.+..+|+.- + +++
T Consensus 244 -tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 244 -TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred -cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 12224479999999999999999999999987642 3444455555555421 1 233
Q ss_pred HHHHHHHHHHHcCC-----------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC----CCCHHHHHHHHHHHH
Q 002795 367 LVHEFFRKMAKSGE-----------AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR-GV----VGTASVYYELACCLC 430 (880)
Q Consensus 367 ~A~~l~~~m~~~g~-----------~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~----~p~~~t~~~Li~~~~ 430 (880)
....-|+.+...+. +.++..|..-+. +..|+..+-...|.+.... ++ -.-...|..+...|-
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 34445555544321 223444443333 2346777778888887653 11 112345888899999
Q ss_pred hCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC------------C------CCCHH
Q 002795 431 NNGRWQDAMLVVEKIKSLRHSKPL--EITFTGLIISSMDGGHIDDCISIFQHMKDH------------C------EPNIG 490 (880)
Q Consensus 431 ~~g~~~~A~~l~~~m~~~~~~~p~--~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~------------~------~pd~~ 490 (880)
.+|+++.|..+|++..+..-...+ ..+|..-..+-.+..+++.|.++.+....- . -.+..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 999999999999998762111111 123333334445667788888877765421 0 11345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQ 569 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~ 569 (880)
.|...++..-..|-++....+|+++....+ ..|-.+ -|..++. .+.-++++.+++++=+..=--
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLri------------aTPqii~NyAmfLE---eh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRI------------ATPQIIINYAMFLE---EHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHH---hhHHHHHHHHHHHcCCccCCC
Confidence 677777777778999999999999998763 345332 3433332 334567777777663332123
Q ss_pred CC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhhhCCCccC
Q 002795 570 LD-QTKHAWLLVEASR---AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAMAYAPFHIT 641 (880)
Q Consensus 570 pd-~~~~~~ll~~~~~---~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~ 641 (880)
|+ -..|+..+..+.+ .-+++.|..+|++..+ |.+|...- ++...|++ .|....|+.++++... ++++.
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK--tiyLlYA~lEEe~GLar~amsiyerat~-~v~~a 619 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK--TIYLLYAKLEEEHGLARHAMSIYERATS-AVKEA 619 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHH
Confidence 44 3467777776643 2379999999999998 55554332 23333333 3778899999999753 33443
Q ss_pred H--HHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccccccccc
Q 002795 642 E--RQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAID 711 (880)
Q Consensus 642 ~--~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v~ 711 (880)
. ..|+.+|+-....--+.....++++.++. .|+.-......++.+.-++.|..+.|..++...+..-+
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 3 25777777544444455568888888887 35676777777888999999999999999877554433
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=2.8e-09 Score=118.25 Aligned_cols=284 Identities=14% Similarity=0.096 Sum_probs=222.5
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 002795 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLY-PDIAAYHSVAVTLGQVGLLKEL 283 (880)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~-pd~~t~~~ll~~~~~~g~~~~A 283 (880)
+..+|...|+...... .-..++...+..+|...+++++|.++|+.+.+..... -+...|.+.+.-+-+. -+
T Consensus 334 ~~~~A~~~~~klp~h~----~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH----YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VA 405 (638)
T ss_pred HHHHHHHHHHhhHHhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HH
Confidence 4678888888743221 1234788889999999999999999999998752221 2678888888765432 22
Q ss_pred HHHHH-HHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q 002795 284 VKLIE-RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP-SAATYGLAMEVMLQ 361 (880)
Q Consensus 284 ~~l~~-~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~ 361 (880)
+..+. .+... .+-...+|-++.++|..+++.+.|++.|++..+. .| ..++|+.+.+-+..
T Consensus 406 Ls~Laq~Li~~----------------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 406 LSYLAQDLIDT----------------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIA 467 (638)
T ss_pred HHHHHHHHHhh----------------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhh
Confidence 23222 22222 4556789999999999999999999999999874 55 78899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002795 362 SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 441 (880)
Q Consensus 362 ~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l 441 (880)
...+|.|...|+..+... +.+-..|.-|...|.+.++++.|.-.|+...+-++. +.+....+...+.+.|+.++|+.+
T Consensus 468 ~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred hHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHH
Confidence 999999999999988764 234456666788999999999999999999987765 444455677778899999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 442 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 442 ~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+++........| ..--.....+...++.++|...++++++-++.+...+..+...|.+.|+.+.|+.-|--+...
T Consensus 546 ~~~A~~ld~kn~--l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 546 YEKAIHLDPKNP--LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhcCCCCc--hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999987333222 333334455667899999999999999988889999999999999999999999999998884
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=4.5e-08 Score=99.64 Aligned_cols=266 Identities=16% Similarity=0.162 Sum_probs=131.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd--~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
--+|.+.|-+.|..+.|+++.+.+..+++.+-+ ....-.|..-|...|-++.|..+|..+...+
T Consensus 72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-------------- 137 (389)
T COG2956 72 HLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-------------- 137 (389)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------------
Confidence 334444444444455555444444443111111 1122233444555555555555555554432
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS----AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA 384 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~ 384 (880)
.--.....-|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+++.|..++.+..+.+ +..+
T Consensus 138 --efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cv 214 (389)
T COG2956 138 --EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCV 214 (389)
T ss_pred --hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccce
Confidence 12223344455556666666666666665555443332 1234444444445556666666666666553 2223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 464 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a 464 (880)
..--.+.+.+...|+++.|++.++...+.++.--..+...|..+|.+.|+.++....+.++.+ . .+....-..+-..
T Consensus 215 RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~--~~g~~~~l~l~~l 291 (389)
T COG2956 215 RASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-T--NTGADAELMLADL 291 (389)
T ss_pred ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c--cCCccHHHHHHHH
Confidence 333345556666666666666666666665544445556666666666766666666666655 2 2222222222222
Q ss_pred HHhCCCHHHHHHH-HHHHhhCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 002795 465 SMDGGHIDDCISI-FQHMKDHCEPNIGTVNAMLKVYSR---NDMFSKAKELFEETTRA 518 (880)
Q Consensus 465 ~~~~g~~~~A~~i-~~~m~~~~~pd~~~~~~Li~~~~~---~g~~~~A~~lf~~m~~~ 518 (880)
.....-.+.|..+ .+.+.. .|+...+..+|..-.. .|...+.+.+++.|...
T Consensus 292 ie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 292 IELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 2223333333333 333333 2666666666665433 23455555566666543
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.3e-07 Score=101.09 Aligned_cols=405 Identities=10% Similarity=0.029 Sum_probs=231.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT-EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
+...-+-+.+++.+++|++.|.+.+... |+ +.-|......|...|+|++..+.--..++..| .-+.++..-.+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P----~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP----DYVKALLRRAS 191 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc----HHHHHHHHHHH
Confidence 3444556778899999999999988764 66 67778888888999999998888887776554 23445666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHh-CCchhHhhhhhhcCC
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI--------ERMRQ-KPSKRIKNMHRKNWD 307 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~--------~~m~~-~g~~~l~~m~~~~f~ 307 (880)
++-..|++++|+.-.. -.+++.++....-.--+.+++ .+-.+ .+..
T Consensus 192 A~E~lg~~~eal~D~t--------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p----------- 246 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVT--------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP----------- 246 (606)
T ss_pred HHHhhccHHHHHHhhh--------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC-----------
Confidence 6777777777653222 222222222222222222222 22111 1100
Q ss_pred CCCCCCHHHHHHHHHHHhcC--------CC-H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002795 308 PVLEPDLVVYNAVLNACVPS--------HQ-W----KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374 (880)
Q Consensus 308 ~~~~pd~~ty~~ll~~~~~~--------g~-~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 374 (880)
.-|.....++..+.+-.. ++ . .++++.+..-. .. .+..|...+.+
T Consensus 247 --~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~-------~e-------------~Y~~a~~~~te 304 (606)
T KOG0547|consen 247 --VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGL-------EE-------------GYLKAYDKATE 304 (606)
T ss_pred --CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhC-------ch-------------hHHHHHHHHHH
Confidence 334444333333332110 00 0 11111111100 00 11111111111
Q ss_pred HHHc---CCCcc---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002795 375 MAKS---GEAIG---------ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 442 (880)
Q Consensus 375 m~~~---g~~~d---------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~ 442 (880)
-... ....+ +.+.+.-..-+.-.|+.-.|..-|+........++.. |--+..+|.+..+.++....|
T Consensus 305 ~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F 383 (606)
T KOG0547|consen 305 ECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDF 383 (606)
T ss_pred HhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHH
Confidence 1000 00000 1122222223445677777777777777766554442 555666677777777777777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002795 443 EKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSG 522 (880)
Q Consensus 443 ~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~ 522 (880)
....+.....|| +|..-...+.-.+++++|..=|++...-.+-++..|-.+..+.-+.+.+++++..|++..+.
T Consensus 384 ~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---- 457 (606)
T KOG0547|consen 384 NKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---- 457 (606)
T ss_pred HHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 777764433343 45555555556677777877777777755556677777777777777888888888887774
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----C--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002795 523 YTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG-----C--QLDQTKHAWLLVEASRAGKCHLLEHAF 595 (880)
Q Consensus 523 ~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g-----~--~pd~~~~~~ll~~~~~~G~~~~A~~~~ 595 (880)
+.--+..|+.....+...++++.|.+.|+..++.. + .+.+.+.-+++..-- .+++..|..++
T Consensus 458 ----------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll 526 (606)
T KOG0547|consen 458 ----------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLL 526 (606)
T ss_pred ----------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHH
Confidence 33355677777777777888888888887776531 1 112233333333222 27888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 596 DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 596 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
++..+.+. .....|..|...-.++|+.++|+++|++-.
T Consensus 527 ~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 527 RKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88877542 234566677777778888888888888764
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=7.5e-08 Score=98.04 Aligned_cols=301 Identities=15% Similarity=0.096 Sum_probs=220.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
|-.-++.|. .+..++|.++|-+|.+.. +-+..+..+|.+.|.+.|..+.|.++++.+.+...-....-..+.-.|..-
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 333344433 567889999999998754 556677788999999999999999999988764332222234567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH--
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV-- 315 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~-- 315 (880)
|...|-++.|..+|..+.+.+. --..+...|+..|-...++++|.++-+++.+.+ ..+..+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~---------------~q~~~~eI 179 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLG---------------GQTYRVEI 179 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC---------------CccchhHH
Confidence 9999999999999999987511 124466788999999999999999999998876 333322
Q ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 002795 316 --VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRA 393 (880)
Q Consensus 316 --ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~ 393 (880)
.|--+-..+....+.+.|..++.+..+...+ .+..--.+.......|++..|.+.++.+.+.+...-..+...|..+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3455556666788999999999999876422 3444455667788999999999999999999866667788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC---CC
Q 002795 394 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG---GH 470 (880)
Q Consensus 394 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~---g~ 470 (880)
|...|+.++....+..+.+....++.. ..+...-....-.+.|...+.+-.. .+|+...+..+|..-... |.
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccc
Confidence 999999999999999998875554432 2233333344455666666555444 579999999999876543 33
Q ss_pred HHHHHHHHHHHhh
Q 002795 471 IDDCISIFQHMKD 483 (880)
Q Consensus 471 ~~~A~~i~~~m~~ 483 (880)
..+-...+..|..
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 4444455555543
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=1.3e-07 Score=99.26 Aligned_cols=285 Identities=14% Similarity=0.082 Sum_probs=234.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAA 406 (880)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~ 406 (880)
.|+|..|+++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999988877543 4456777788889999999999999999874467788888889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHH
Q 002795 407 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-------ITFTGLIISSMDGGHIDDCISIFQ 479 (880)
Q Consensus 407 ~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-------~t~~~ll~a~~~~g~~~~A~~i~~ 479 (880)
++++.+.+..+ .........+|.+.|++.....++..|.+ .+...++ .+|..+++-+...+..+.-...++
T Consensus 176 v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999988764 45578899999999999999999999998 5555444 368899998888888888888999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002795 480 HMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 559 (880)
Q Consensus 480 ~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l 559 (880)
......+.++..-.+++.-+.++|+.++|.++..+..+.+ ..|. -..+-.+.+.++...-.+.
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-------------~D~~----L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-------------WDPR----LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------------cChh----HHHHHhhcCCCCchHHHHH
Confidence 8888777778888899999999999999999999999876 3444 2223345566776666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 560 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 560 ~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
.++-.+. ..-++..+.+|-..|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+.++|.+..++..
T Consensus 317 ~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 317 AEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6655443 2233577888888899999999999999977764 5999999999999999999999999988865
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.9e-07 Score=97.58 Aligned_cols=459 Identities=10% Similarity=0.039 Sum_probs=275.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
+...++.....+.+.+.-.+.++.|..++..-.-. .-|..........+.+...|++|..++... .....+...+..
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~-~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRG-HVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhcchhhcch
Confidence 34478888889999999999999998876554322 347777888888888999999999998722 000000000000
Q ss_pred H----------H-----HHHHH-------HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 230 V----------Y-----TKLLA-------ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287 (880)
Q Consensus 230 ~----------~-----~~Ll~-------~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~ 287 (880)
. + +.-.+ .|....+.++|...|.+.... |...|..+...-... .-.+.+.+
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~-----D~~c~Ea~~~lvs~~--mlt~~Ee~ 193 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA-----DAKCFEAFEKLVSAH--MLTAQEEF 193 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-----chhhHHHHHHHHHHH--hcchhHHH
Confidence 0 0 11111 222233445555555554432 444443332211111 11111112
Q ss_pred HHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002795 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL 367 (880)
Q Consensus 288 ~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 367 (880)
+.+....-. | ...-++...-.+.........-+.....-.+-.-.|+.-+......-..-|...+++.+
T Consensus 194 ~ll~~l~~a----~-------~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~ 262 (611)
T KOG1173|consen 194 ELLESLDLA----M-------LTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKE 262 (611)
T ss_pred HHHhcccHH----h-------hhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHH
Confidence 222111000 0 00111111111111110000000000000001111233455555555666777788888
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 368 VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 368 A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
...+++.+.+.. ++....+..-|..+...|+..+-..+=..|.+..+. ...+|-++..-|...|+..+|.+.|.+...
T Consensus 263 c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 263 CLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 888888888774 566667777777888888877777777777766543 455677777777778888888888887754
Q ss_pred cCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc
Q 002795 448 LRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL 526 (880)
Q Consensus 448 ~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l 526 (880)
+.|. ...|.....+|+-.|..++|+..+....+-++....-+--+.--|.+.+.+..|.++|.+...
T Consensus 341 ---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--------- 408 (611)
T KOG1173|consen 341 ---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--------- 408 (611)
T ss_pred ---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---------
Confidence 3332 246777788888888888888887776653222211122234457777888888888888877
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 527 SGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS--GC----QLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 599 (880)
Q Consensus 527 ~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~--g~----~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~ 599 (880)
+-| |+..++-+.......+.+.+|..+|+..... .+ .--..+++.|...|.+++.+++|...|++..
T Consensus 409 ------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 409 ------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred ------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 445 6667777666666677888888888876621 01 1135567888888899999999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHh
Q 002795 600 EAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESN 652 (880)
Q Consensus 600 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~ 652 (880)
... +.+..++.++.-.|...|+++.|++.|.+.. .+.|+..+.+.+|+.+
T Consensus 483 ~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 483 LLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 753 3466677777777777899999999999887 6788888888877744
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=8e-08 Score=102.70 Aligned_cols=215 Identities=12% Similarity=0.005 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHH
Q 002795 468 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEA 546 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a 546 (880)
+|+.-.|..-|+...+..+.+...|--+..+|....+.++....|++....+ | |..+|..-.+.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---------------p~n~dvYyHRgQm 403 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD---------------PENPDVYYHRGQM 403 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC---------------CCCCchhHhHHHH
Confidence 5666666666666665433333335555666666666666666666666633 3 34455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHH
Q 002795 547 SATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEK 625 (880)
Q Consensus 547 ~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 625 (880)
..-.+++++|..=|++.+. +.|. ...|..+-.+.-+.+++++++..|+..+++ ++-.+..|+-....+..+++++.
T Consensus 404 ~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHH
Confidence 5555666666666666653 3443 344444444444666677777777666553 22334455555566666666777
Q ss_pred HHHHHHHhhh-----CCCccCHHHHH--HHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhh
Q 002795 626 AVALINAMAY-----APFHITERQWT--ELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERD 698 (880)
Q Consensus 626 A~~l~~~m~~-----~~~~p~~~~~~--~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~e 698 (880)
|.+.|+.... .++..+...+. .++-. .-.+++..|.+++++.++.++. ++.....+ .....+.|+.++
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tl---aq~~lQ~~~i~e 555 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETL---AQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHH---HHHHHHHhhHHH
Confidence 7766666541 12222222221 11111 2336666777777777776666 55444443 555566677777
Q ss_pred hhhhccc
Q 002795 699 LSSSAHF 705 (880)
Q Consensus 699 a~~~~~~ 705 (880)
|+++|..
T Consensus 556 AielFEk 562 (606)
T KOG0547|consen 556 AIELFEK 562 (606)
T ss_pred HHHHHHH
Confidence 7666544
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=2.7e-07 Score=96.96 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002795 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE 282 (880)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~ 282 (880)
.|+|.+|+++....-+.++ .....|..-..+.-..|+.+.|-.++.+..+. .-.++...+-+........|++..
T Consensus 97 eG~~~qAEkl~~rnae~~e----~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE----QPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc----chHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchh
Confidence 5889999888887654332 23456667777777889999999999988874 234556667777778888899999
Q ss_pred HHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHH
Q 002795 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA-------ATYGLA 355 (880)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~l 355 (880)
|..-++++.+. .+.+.........+|.+.|++.....++..|.+.|+--+. .+|..+
T Consensus 172 A~~~v~~ll~~----------------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 172 ARENVDQLLEM----------------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHHh----------------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 99888888876 4667788888999999999999999999999988876553 467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435 (880)
Q Consensus 356 l~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 435 (880)
+.-+...+..+.-...++....+ ...++..-.+++.-+.++|+.++|.++..+..+++..|...+ .-.+.+.++.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCc
Confidence 77777777766666777776654 344566777888899999999999999999999887665222 2235677777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 515 (880)
Q Consensus 436 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m 515 (880)
..-++..+.-.+..+..| ..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+..+|.+++++.
T Consensus 311 ~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 777777777766445455 5678888899999999999999995554 5699999999999999999999999999987
Q ss_pred HHc
Q 002795 516 TRA 518 (880)
Q Consensus 516 ~~~ 518 (880)
...
T Consensus 388 L~~ 390 (400)
T COG3071 388 LLL 390 (400)
T ss_pred HHH
Confidence 753
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=3.4e-08 Score=101.88 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
.+..+...+...|++++|...++.+++..+ .+...+..+...|...|++++|.+.|++..+. .+.+...+..+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP----DDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 334444444444444444444444443221 22334444444444445555555554444432 122333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (880)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (880)
..+...|++++|...|........ .......+..+..++...|++++|...|.+..... +.+...
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 171 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPL--------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPES 171 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccc--------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHH
Confidence 444445555555555554443210 11122334444444555555555555555544432 112334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444555555555555555555555444 22334444445555555555555555555443
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.09 E-value=2e-10 Score=87.35 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ 361 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 361 (880)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=6.8e-08 Score=99.60 Aligned_cols=201 Identities=16% Similarity=0.106 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
....+..+...|...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------- 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------------- 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------
Confidence 3567888888889999999999999988764 3345677788888888899999999999888775
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHH
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP-SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~ 385 (880)
.+.+...+..+...+...|++++|...|.+.......| ....+..+..++...|++++|...+.+..+.. +.+..
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 170 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPE 170 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChH
Confidence 34456677778888888899999999888887643222 34455666777778888888888888877764 33456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+..+...+...|++++|...+++..... ..+...+..++..+...|+.+.|..+.+.+..
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 67777778888888888888888777652 33445555666777777788877777766654
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=3.8e-06 Score=86.48 Aligned_cols=449 Identities=11% Similarity=0.069 Sum_probs=229.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH
Q 002795 162 VDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLL-KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240 (880)
Q Consensus 162 i~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~ 240 (880)
++-+..+.++..|..+++.-...+- -........| ..+-+.|++++|..++..+.+. ..++...+-.|.-.+.-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHH
Confidence 3344456677788777776654442 2222333333 3445778888888888876542 22555666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHH
Q 002795 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV 320 (880)
Q Consensus 241 ~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~l 320 (880)
.|.+.+|..+-....+ ++..-..|+....+.++-++-..+...+.... -|. -+|
T Consensus 104 Lg~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----------------Edq---LSL 157 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----------------EDQ---LSL 157 (557)
T ss_pred HHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----------------HHH---HhH
Confidence 7888888776655443 34444455555566677666666666554321 111 122
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 002795 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV-MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~ 399 (880)
.+..-..-.+.+|+++|...... .|+-...|.-+.. |.+..-++-+..+++--.+. ++.+....|.......+.=.
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 22222233577788888877654 3454444544433 35666666677776665554 33344555555444444322
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNG-----RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g-----~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
-..|..-..++.+.+-.. |- .+.-+++.. .-+.|++++-.+.+ ..|. +-..|+--|.+.+++.+|
T Consensus 235 gr~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~---~IPE--ARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMK---HIPE--ARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred cchhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHh---hChH--hhhhheeeecccccHHHH
Confidence 233333344443332211 11 222233322 23456666555443 2232 223444456677777777
Q ss_pred HHHHHHHhhCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHH
Q 002795 475 ISIFQHMKDHCEPNIGTVN-------AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEA 546 (880)
Q Consensus 475 ~~i~~~m~~~~~pd~~~~~-------~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a 546 (880)
..+.+.+.- .++.-|- .+..-.....+..-|.+.|+-.-..+ ..-|.. .--++...
T Consensus 305 ~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa-------------~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 305 ISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA-------------LECDTIPGRQSMASY 368 (557)
T ss_pred HHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc-------------cccccccchHHHHHH
Confidence 766555432 1222221 11111111223445555555443333 122211 12233334
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHhCCHHH
Q 002795 547 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLI-QAIVQSNYEK 625 (880)
Q Consensus 547 ~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~ 625 (880)
+.-..+++..+-.++.+..-=..-|.+.+ .+..+++..|.+.+|+++|-.+....+ .+..+|-+++. +|.+.++.+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 44445566666666555443222223333 455667777777777777766544332 34455555543 3444466777
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHH-HhhhccCHHHHHHHHHHHHhCCCCC
Q 002795 626 AVALINAMAYAPFHITERQWTELFE-SNEDRISRDKLEKLLNALCNCNAAS 675 (880)
Q Consensus 626 A~~l~~~m~~~~~~p~~~~~~~ll~-a~~~~~~~~~a~~l~~~~~~~~~~p 675 (880)
|..++-++- ...+..+...++. .|.+.+..--+.+.|..+...++.|
T Consensus 447 AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 447 AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 777666652 2333444444444 4666666666666666666666543
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=1.8e-07 Score=109.85 Aligned_cols=250 Identities=11% Similarity=-0.050 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 002795 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK---------AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG 275 (880)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~---------~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~ 275 (880)
.+++|..+|+.+++..| .+...|..+..+|.. .+++++|...+++..+. -+-+..+|..+...+.
T Consensus 276 ~~~~A~~~~~~Al~ldP----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 35677777777766544 344555555544432 23467777777777763 2335666666666777
Q ss_pred hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002795 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (880)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (880)
..|++++|...|++..+. .+.+...|..+...|...|++++|...+++..+.... +...+..+
T Consensus 350 ~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~ 412 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLL----------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITK 412 (553)
T ss_pred HccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 777777777777777764 3344556666777777777787787777777765322 22222333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435 (880)
Q Consensus 356 l~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 435 (880)
+..+...|++++|...++++.+...+.+...+..+..+|...|++++|...+.++...... +....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--
Confidence 4445567777777777777766532224455666777777778888888777776544322 2233444555556666
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 436 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
+.|...++.+.+.....+....+..++ |.-.|+-+.+..+ +++.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhc
Confidence 366666666655444444443443333 3344555555555 55554
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.03 E-value=6.4e-10 Score=84.58 Aligned_cols=50 Identities=28% Similarity=0.544 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 382 ~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=1.2e-07 Score=111.30 Aligned_cols=250 Identities=10% Similarity=0.006 Sum_probs=172.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG---------QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 242 g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~---------~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
+..++|+.+|++..+. -+-+...|..+..++. ..+++++|...+++..+. .+-
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----------------dP~ 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----------------DHN 336 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----------------CCC
Confidence 3568888888888874 5666767766655443 224478899999988875 455
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
+...|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 67778888778888899999999999988764 224566777888888899999999999998887522 2333444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCCH
Q 002795 393 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHI 471 (880)
Q Consensus 393 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~a~~~~g~~ 471 (880)
.+...|++++|...+++.......-+...+..+..+|...|++++|...+.++.. ..|+..+ .+.+...|+..|
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--
Confidence 5667888999999998887664332444566677788889999999999888765 3444433 444555566666
Q ss_pred HHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 472 DDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 472 ~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
+.|...++.+.+. ..+.-..+ +-..|+-.|+.+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777777776652 22322223 33345556776666666 8887776
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.00 E-value=3.8e-05 Score=85.57 Aligned_cols=443 Identities=13% Similarity=0.086 Sum_probs=281.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
+..++..+ ..+++...+.+.+.+.+ +.+-...+.....-.+...|+.++|.......++ +...+.+.|..+.-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhc----cCcccchhHHHHHHH
Confidence 34444444 46778888888888887 4344556665555566778999999988876654 344678899999988
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
+-...++++|++.|.....- -+-|...|.-+--.-++.|+++.....-..+.+. .+.....|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----------------~~~~ra~w 146 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----------------RPSQRASW 146 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------hhhhHHHH
Confidence 88889999999999998873 2334566666665667778888888877777765 45567789
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAM------EVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll------~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
..+..++.-.|+...|..++++..+.. -.|+...|.-.. .....+|.++.|.+.+..-... +.-....--.-
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~k 225 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhH
Confidence 999999999999999999999998654 246666655433 2345778888888777655443 22223344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhCCCHHHHH-HHHHHHHhcC--CCCCCHHHHHHHHHHHH
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE-LACCLCNNGRWQDAM-LVVEKIKSLR--HSKPLEITFTGLIISSM 466 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-Li~~~~~~g~~~~A~-~l~~~m~~~~--~~~p~~~t~~~ll~a~~ 466 (880)
...+.+.+++++|..++..+..++ ||..-|+. +..++.+-.+.-+++ .+|....+.. ...|-....+.+ .
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~ 299 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----N 299 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----C
Confidence 677889999999999999999886 55555554 444443333333344 5565554411 111111111111 1
Q ss_pred hCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc--CCCCCCCCCCHH--HHH
Q 002795 467 DGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL--SGDGAPLKPDEY--TYS 541 (880)
Q Consensus 467 ~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l--~~~~~~~~Pd~~--t~~ 541 (880)
...-.+....++..+.. |+++- +..+...|-.-...+-..++.-.+.. ..++...+ .+.+..-.|... |+-
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~-~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQH-SLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHh-hcccccCCCcccccccCCchHHHHHHH
Confidence 11122233334444433 44432 33333334322222211111111111 11111111 111111244544 455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 002795 542 SMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 620 (880)
Q Consensus 542 ~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 620 (880)
.++..+-+.|+++.|....+..+. ..|+ ...|..=.+.+.+.|.+++|...+++..+.+ .||...-.-......++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 667788888999999999999885 4676 3455555577899999999999999988865 36666665677777888
Q ss_pred CCHHHHHHHHHHhhhCCC
Q 002795 621 SNYEKAVALINAMAYAPF 638 (880)
Q Consensus 621 g~~~~A~~l~~~m~~~~~ 638 (880)
.+.++|..+.......|.
T Consensus 453 n~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cccHHHHHHHHHhhhccc
Confidence 999999999888876664
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=4.3e-06 Score=86.09 Aligned_cols=422 Identities=11% Similarity=0.079 Sum_probs=256.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
.+...+.+-|++++|+..|..+.+.. .++......|...+.-.|.+.+|.++-...- .++..-..|...-.
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~--------k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP--------KTPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHH
Confidence 34556678899999999999988766 5666666666666667889999999877541 23333444455555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHH
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ 319 (880)
+.++-++-..+-..+.. ...---+|.+..-..-.+.+|.++|..... ..|+-...|.
T Consensus 133 klndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~-----------------dn~ey~alNV 189 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ-----------------DNPEYIALNV 189 (557)
T ss_pred HhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-----------------cChhhhhhHH
Confidence 66777666666555544 223333444444455578999999999987 4567777776
Q ss_pred HHHH-HhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 320 VLNA-CVPSHQWKGVFWVFKQLRKSGLKPSA-ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 320 ll~~-~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
-+.. |.+..-++-+.+++..-.+. -||. ...|.......+.=.-..|++-...+...+-.. | -.+.-.++.
T Consensus 190 y~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rH 262 (557)
T KOG3785|consen 190 YMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRH 262 (557)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHc
Confidence 5554 66777778888888777654 3443 333433333333222223444444444443111 1 122222332
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHh
Q 002795 398 -----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-----SMD 467 (880)
Q Consensus 398 -----g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a-----~~~ 467 (880)
..-+.|++++--+.+. .|... .| |+--|.+.+++.+|..+.+.+ ....|-....-.++.+ ...
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IPEAR-lN-L~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IPEAR-LN-LIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--ChHhh-hh-heeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCc
Confidence 3446677776655543 33332 23 555688999999998886665 3455655544444332 233
Q ss_pred CCCHHHHHHHHHHHhh-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHH
Q 002795 468 GGHIDDCISIFQHMKD-HCE-PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 545 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~-~~~-pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~ 545 (880)
..++.-|.+.|+..-+ ... .++.---+|.+.+.-..++++.+-.+..+..- +.-|...--.+.+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--------------F~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--------------FTNDDDFNLNLAQ 401 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcCcchhhhHHHH
Confidence 3456777777777655 222 22333445666667777889998888888774 3344343345678
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHhCCH
Q 002795 546 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL-LVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEM-LIQAIVQSNY 623 (880)
Q Consensus 546 a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~l-l~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 623 (880)
+.+..|++.+|+++|-++....+ .|..+|.++ .++|.++++.+.|++++-.+.. ..+..+.-.+ ...|++.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 88889999999999966543222 356666654 4567899999888776654432 2233333333 3566777776
Q ss_pred HHHHHHHHHhhhCCCccCHHHHHH
Q 002795 624 EKAVALINAMAYAPFHITERQWTE 647 (880)
Q Consensus 624 ~~A~~l~~~m~~~~~~p~~~~~~~ 647 (880)
--|-+-|+.+. ...|++.-|..
T Consensus 478 yyaaKAFd~lE--~lDP~pEnWeG 499 (557)
T KOG3785|consen 478 YYAAKAFDELE--ILDPTPENWEG 499 (557)
T ss_pred HHHHHhhhHHH--ccCCCccccCC
Confidence 55555555554 34677777763
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.6e-06 Score=90.12 Aligned_cols=292 Identities=15% Similarity=0.106 Sum_probs=226.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
...|......-..-|...+++.+..++++...+.. +++...+..=|.++...|+..+-.-+=.+|++. .|....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34455555566666788999999999999988653 445556666677888889887777777777776 3667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g 469 (880)
+.--|...|+..+|.+.|.+....+..- ...|-.....|+-.|..++|+..+...-+.-...--+..| +-.-|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhc
Confidence 9999999999999999999987665432 2358888899999999999999888776522111112233 334578899
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC-CCHHHHHHHHHHHH
Q 002795 470 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK-PDEYTYSSMLEASA 548 (880)
Q Consensus 470 ~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~-Pd~~t~~~ll~a~~ 548 (880)
+.+.|.++|.+...-.|-|+...+-+.-.....+.+.+|..+|+..+..-.+ ...-+ .-..+++.|..+|.
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~--------~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS--------VLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh--------ccccccchhHHHHhHHHHHH
Confidence 9999999999999988899999999998888899999999999988742100 00011 13457889999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQA 617 (880)
Q Consensus 549 ~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 617 (880)
+.+.+++|...+++.+.. .+-+..+|.++.-.|...|+++.|.+.|.+..- +.|+..+...++..+
T Consensus 467 kl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999999998875 355788999999999999999999999998765 568887777777644
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=7.3e-05 Score=83.39 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002795 494 AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 572 (880)
Q Consensus 494 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~ 572 (880)
.++..|-+.|+++.|...++....+ .|+.+ .|..=.+.+.+.|.++.|..++.+..+.. .+|.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH---------------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR 439 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH---------------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADR 439 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc---------------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhH
Confidence 3455556666666666666666553 35433 33333455555566666666666655432 2333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH--HHHHHHhCCHHHHHHHHHHh
Q 002795 573 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI--PH----PLFFTEM--LIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 573 ~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~--p~----~~~~~~l--l~~~~~~g~~~~A~~l~~~m 633 (880)
..-.--..-..++..+++|..+.....+.|.. -+ ..+|..+ ..+|.++|++.+|++=|..+
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 33223333344566666666666655554420 00 1122211 24555666666666554444
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=2.5e-06 Score=97.29 Aligned_cols=301 Identities=14% Similarity=0.114 Sum_probs=158.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+...|++++|++.+..-... +......+......+.+.|+.++|..+|..+.+.+ |+...|
T Consensus 13 il~e~g~~~~AL~~L~~~~~~----------------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Y 74 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ----------------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDY 74 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh----------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHH
Confidence 356778888888888775553 33334444556666888888888888888888764 555554
Q ss_pred HHHHHHHH-Hc-----CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHH
Q 002795 353 GLAMEVML-QS-----GKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKI-NEAVAAVRNMEQRGVVGTASVYYEL 425 (880)
Q Consensus 353 ~~ll~a~~-~~-----g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~L 425 (880)
-..+..+. -. .+.+....+|+++...- |...+...+.-.+.....+ ..+..++..+..+|+++ +|+.|
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~l 149 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNL 149 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHH
Confidence 44444433 11 24566777777776653 3222222222222222222 34556667777777654 45555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHH--HHHHHHHHHHhcC
Q 002795 426 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIG--TVNAMLKVYSRND 503 (880)
Q Consensus 426 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~--~~~~Li~~~~~~g 503 (880)
-..|....+..-...++........ ..+.+.... -...-+|... ++.-+...|...|
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~----------------~~~~~~~~~-----~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLE----------------SNGSFSNGD-----DEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhc----------------ccCCCCCcc-----ccccCCchHHHHHHHHHHHHHHHhC
Confidence 5555554444444444444332100 000000000 0001233332 2344455566666
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 504 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA 582 (880)
Q Consensus 504 ~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~ 582 (880)
++++|++++++.+.+ .|+ +..|..-...+-+.|++.+|.+.++....... -|...-+-....+
T Consensus 209 ~~~~Al~~Id~aI~h---------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH---------------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYL 272 (517)
T ss_pred CHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHH
Confidence 666666666666663 353 34555555666666666666666666554331 2444444444455
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH------HHH--HHHHHHHHhCCHHHHHHHHHHh
Q 002795 583 SRAGKCHLLEHAFDSLLEAGEIPHPL------FFT--EMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 583 ~~~G~~~~A~~~~~~m~~~g~~p~~~------~~~--~ll~~~~~~g~~~~A~~l~~~m 633 (880)
.++|++++|..++......+..|... .|. ....+|.+.|++..|+.-|..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56666666666666665544322111 221 2345666666666666555544
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.8e-07 Score=95.14 Aligned_cols=229 Identities=11% Similarity=0.102 Sum_probs=195.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
+-+..+|.+.|.+.+|.+.|..-.+ ..|-+.||-.|-.+|.+-.+...|+.+|.+-.+. -|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-----------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP 287 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-----------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FP 287 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-----------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CC
Confidence 6788999999999999999998877 4567778888999999999999999999998764 45
Q ss_pred CHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002795 348 SAATY-GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELA 426 (880)
Q Consensus 348 d~~t~-~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li 426 (880)
-.+|| ..+.+.+-..++.++|.++|+...+.. +.++.....+...|.-.++.+-|+++|++++..|+. +...|+.+.
T Consensus 288 ~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~Nig 365 (478)
T KOG1129|consen 288 FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIG 365 (478)
T ss_pred chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHH
Confidence 55554 557778888899999999999999874 556777778888899999999999999999999987 566688888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 002795 427 CCLCNNGRWQDAMLVVEKIKSLRHSKPLE--ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 504 (880)
Q Consensus 427 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~ 504 (880)
-+|.-.++++-++.-|.+... .-..|+. ..|-.+-......|++..|.+.|+-...+...+...+|.|.-.-.+.|+
T Consensus 366 LCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 888899999999999999877 3334544 3566677777788999999999999888777889999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 002795 505 FSKAKELFEETTRA 518 (880)
Q Consensus 505 ~~~A~~lf~~m~~~ 518 (880)
+++|..+++.....
T Consensus 445 i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 445 ILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHHHHHhhhh
Confidence 99999999998874
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=2.4e-07 Score=94.15 Aligned_cols=228 Identities=15% Similarity=0.088 Sum_probs=160.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHH-HHHHH
Q 002795 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY-HSVAV 272 (880)
Q Consensus 194 ~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~-~~ll~ 272 (880)
+.+.+.|.+.|.+.+|..-|+..+++. +-+.+|-.|-++|.+-.++..|+.+|.+-.+. .|-.+|| .-+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~-----~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-----PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC-----CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHH
Confidence 567777778888888888887776643 34456777777888888888888888877763 3444444 44666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+...++.++|.++|+...+. .+-|+....++..+|.-.++.+-|+.+|+++.+.|+. +...|
T Consensus 299 i~eam~~~~~a~~lYk~vlk~----------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf 361 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKL----------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELF 361 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhc----------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHH
Confidence 677777888888888877765 4456666666666677777888888888888888765 66667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG--ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~ 430 (880)
+.+.-+|.-.++++.+...|.+....--.|+ ..+|..|.......|++..|.+.|+-.+..+.. ....+|.|.-.-.
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~ 440 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAA 440 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHh
Confidence 7777777777888888877777765533232 346666777777778888888888777766643 3455666666667
Q ss_pred hCCCHHHHHHHHHHHHh
Q 002795 431 NNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 431 ~~g~~~~A~~l~~~m~~ 447 (880)
+.|++++|..++.....
T Consensus 441 r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKS 457 (478)
T ss_pred hcCchHHHHHHHHHhhh
Confidence 77788877777777655
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.85 E-value=1.2e-06 Score=98.56 Aligned_cols=247 Identities=17% Similarity=0.174 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCC---CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRD---LKSRF-VYTKLLAILGKAGRPHEALRIFNLMLED-----CNL 260 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~---~~d~~-~~~~Ll~~~~~~g~~~~A~~lf~~m~~~-----~g~ 260 (880)
..++..+..+|...|+++.|..++++.++.-.+.. .+.+. ..+.+...|...+++.+|..+|+++... +..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777799999999999999999999877621111 13332 2344677889999999999999998763 122
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHH
Q 002795 261 YPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV-YNAVLNACVPSHQWKGVFWVFK 338 (880)
Q Consensus 261 ~pd-~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~t-y~~ll~~~~~~g~~~~A~~l~~ 338 (880)
.|. ..+++.|..+|.+.|++++|...++...+. +.++.. ...|.+.+ ++.+...|...+++++|..+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I--------~~~~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI--------YEKLLG-ASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH--------HHHhhc-cChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 333 456788888999999999999988887653 222111 13344443 4455556788888888888887
Q ss_pred HHHHC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------CCccHHHHHHHHHHHHhcCCHHHHH
Q 002795 339 QLRKS---GLKPS----AATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-------EAIGALTYKVLVRAFWEEGKINEAV 404 (880)
Q Consensus 339 ~m~~~---g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-------~~~d~~~~~~Li~~~~~~g~~~~A~ 404 (880)
...+. -+.++ ..+++.+...|...|++++|+.+|+.++... ..-....++-|...|.+.+...+|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 65421 11122 3456667777777777777777777665431 1112345556666666666666666
Q ss_pred HHHHHHHH----CCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 405 AAVRNMEQ----RGV--VGTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 405 ~~~~~m~~----~g~--~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
++|.+... -|+ +....+|..|...|...|+++.|..+.+..
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 66665332 121 112244555555555555555555555444
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=1.8e-05 Score=90.37 Aligned_cols=289 Identities=15% Similarity=0.149 Sum_probs=183.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
.+...|++++|++.++.-... .+|. .........+.+.|+.++|..+|..+... .|+..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----------------NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----------------NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------CCCcH
Confidence 346667777777777665442 3443 33445566677777777777777777764 23444
Q ss_pred HHH-HHHHHHhc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCccHHHHH
Q 002795 316 VYN-AVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKY-DLVHEFFRKMAKSGEAIGALTYK 388 (880)
Q Consensus 316 ty~-~ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~-~~A~~l~~~m~~~g~~~d~~~~~ 388 (880)
.|- .+..+... ..+.+....+|+++...- |.......+.-.+.....+ ..+..++..+..+|+|+ +++
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~ 147 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFS 147 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHH
Confidence 443 33333311 124566677777775432 3332222222122221122 24556666777777643 566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 002795 389 VLVRAFWEEGKINEAVAAVRNMEQR----G----------VVGTAS--VYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 452 (880)
Q Consensus 389 ~Li~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~~--t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~ 452 (880)
.|-..|....+..-...++..+... + -.|... ++.-+...|...|++++|+.++++... ..
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---ht 224 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HT 224 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cC
Confidence 6666666555555555555555432 1 123332 445567778899999999999998887 33
Q ss_pred CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 002795 453 PL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 531 (880)
Q Consensus 453 p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~ 531 (880)
|+ ...|..-...+-+.|++.+|...++....-..-|...-+-.+..+.++|++++|.+++....+.+
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~------------ 292 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED------------ 292 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC------------
Confidence 54 34577777888999999999999999988666788888888899999999999999999887765
Q ss_pred CCCC--CHH----HH--HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 532 PLKP--DEY----TY--SSMLEASATAHQWEYFEYVYKGMALS 566 (880)
Q Consensus 532 ~~~P--d~~----t~--~~ll~a~~~~~~~~~A~~l~~~m~~~ 566 (880)
..| |.. .| .-...+|.+.|++..|+.-|..+.+.
T Consensus 293 -~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 293 -VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 223 211 22 34456778889988888777666543
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.00015 Score=80.22 Aligned_cols=441 Identities=14% Similarity=0.133 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l 270 (880)
..+.+=++.+...|++++|.+....++...+ .+..++..-+-++.+.+++++|+.+.+.-.. +..+..-+---
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p----dd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP----DDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC----CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHH
Confidence 3455566777888899999999998886553 4566777777788889999999865554322 11111111112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CH
Q 002795 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP-SA 349 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~ 349 (880)
..+..+.+..++|+..+.-. .+.+..+...-...|-+.|++++|+.+|+.+.+.+..- +.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~-------------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGL-------------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHcccHHHHHHHHhcc-------------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 33344678889998888822 22233344455556788899999999999998775431 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH
Q 002795 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL---VRAFWEEGKINEAVAAVRNMEQRG-------VVGTA 419 (880)
Q Consensus 350 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L---i~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~ 419 (880)
..-..++.+-.. -.+. .+......| ..+|..+ ...+...|++.+|+++++...+.+ -..+.
T Consensus 147 ~~r~nl~a~~a~----l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 147 ERRANLLAVAAA----LQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE 217 (652)
T ss_pred HHHHHHHHHHHh----hhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 111222221111 0111 122222222 2233333 344567899999999998873221 11111
Q ss_pred H-------HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhCCCHH-HHHHHHHHHhhC---
Q 002795 420 S-------VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI----TFTGLIISSMDGGHID-DCISIFQHMKDH--- 484 (880)
Q Consensus 420 ~-------t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~----t~~~ll~a~~~~g~~~-~A~~i~~~m~~~--- 484 (880)
. .---|.-.+-..|+..+|..++..... ...+|.. .-|.|+..-....-.+ .+...++.....
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~ 295 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAE 295 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHH
Confidence 1 111244455688999999999888876 2334442 2334443322222122 222233222210
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc--CCH
Q 002795 485 ---------CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA--HQW 553 (880)
Q Consensus 485 ---------~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~--~~~ 553 (880)
....+..-+.++..|. +..+.+.++-..... ..|. ..+.+++..+... ..+
T Consensus 296 ~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~---------------~~p~-~~~~~ll~~~t~~~~~~~ 357 (652)
T KOG2376|consen 296 FLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG---------------MSPE-SLFPILLQEATKVREKKH 357 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc---------------cCch-HHHHHHHHHHHHHHHHHH
Confidence 0111122223333333 333445444443322 2233 4455555555443 236
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHhCCH
Q 002795 554 EYFEYVYKGMALSGCQLD--QTKHAWLLVEASRAGKCHLLEHAFD--------SLLEAGEIPHPLFFTEMLIQAIVQSNY 623 (880)
Q Consensus 554 ~~A~~l~~~m~~~g~~pd--~~~~~~ll~~~~~~G~~~~A~~~~~--------~m~~~g~~p~~~~~~~ll~~~~~~g~~ 623 (880)
..+.+++....+. .|. ..+.-..+......|+++.|.+++. .+.+.+..|-.+.+ ++..+++.++-
T Consensus 358 ~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 358 KKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred hhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 6677777666543 333 3344444555678999999999999 66666666654444 56666666554
Q ss_pred HHHHHHHHHhhh--CCCccCHHHHHHHHH----HhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhcc
Q 002795 624 EKAVALINAMAY--APFHITERQWTELFE----SNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSE 694 (880)
Q Consensus 624 ~~A~~l~~~m~~--~~~~p~~~~~~~ll~----a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g 694 (880)
+-|..++..... ..-.+......+++. --...|..+.+..+++++.+.++. ....+..++-+|++..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~----d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN----DTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHhcC
Confidence 444444444320 000112223333332 223458999999999999997765 2333555677776554
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.81 E-value=7.9e-07 Score=100.06 Aligned_cols=250 Identities=14% Similarity=0.135 Sum_probs=183.0
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCC---
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQS-----GL-MFTEGQ-MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR--- 223 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~--- 223 (880)
-..+...+...+...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|+.++..-...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666889999999999999999887764 21 234433 3447788899999999999999887653321
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCch
Q 002795 224 -DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED----CNL-YPDIA-AYHSVAVTLGQVGLLKELVKLIERMRQKPSK 296 (880)
Q Consensus 224 -~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~----~g~-~pd~~-t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 296 (880)
...-..+++.|..+|.+.|++++|...++...+- .+. .|.+. .++.+...|+..+.+++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i--- 354 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI--- 354 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH---
Confidence 1122457888888999999999988887776542 122 23333 3566777888999999999999876543
Q ss_pred hHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHHcCChHHHH
Q 002795 297 RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-----G-LKP-SAATYGLAMEVMLQSGKYDLVH 369 (880)
Q Consensus 297 ~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-d~~t~~~ll~a~~~~g~~~~A~ 369 (880)
|...+.+-..--.-+|+.|-..|...|++++|.++|++.... | ..+ ....++.+...|.+.+.+..|.
T Consensus 355 -----~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 355 -----YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred -----HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 223333322233457999999999999999999999998632 1 122 2456788888999999999999
Q ss_pred HHHHHHHH----cC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 370 EFFRKMAK----SG--EAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 370 ~l~~~m~~----~g--~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
++|.+... .| .+-...+|..|...|...|+++.|.++.+...
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99887543 23 23346889999999999999999999988876
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=0.00021 Score=81.32 Aligned_cols=409 Identities=12% Similarity=0.049 Sum_probs=241.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhc
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~ 305 (880)
.|..+|..|.-++.++|+++.+.+.|++... +..-....|+.+...|...|.-..|..+++.-....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~----------- 387 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS----------- 387 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-----------
Confidence 5677888888888999999999999998876 455667789999999999999888999888776542
Q ss_pred CCCCCCCC-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHC--CCC--CCHHHHHHHHHHHHHc-----------CChHHH
Q 002795 306 WDPVLEPD-LVVYNAVLNACV-PSHQWKGVFWVFKQLRKS--GLK--PSAATYGLAMEVMLQS-----------GKYDLV 368 (880)
Q Consensus 306 f~~~~~pd-~~ty~~ll~~~~-~~g~~~~A~~l~~~m~~~--g~~--pd~~t~~~ll~a~~~~-----------g~~~~A 368 (880)
..|+ ...+-..-..|. +.+..++++.+-.+.... +.. .....|-.+.-+|... ....++
T Consensus 388 ----~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 388 ----EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred ----cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 2343 333333333344 456677777776666541 111 1223344444344311 123467
Q ss_pred HHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 369 HEFFRKMAKSG-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 369 ~~l~~~m~~~g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+.+++.++.+ ..|++..|- ---|+..++++.|.+..++..+-+...+...|..|.-.+...+++.+|+.+.+....
T Consensus 464 lqale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 77777777765 344444443 334667789999999999999887777888899999889999999999999888766
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh----------------------hC------CCCC-HHHHHHHHHH
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK----------------------DH------CEPN-IGTVNAMLKV 498 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~----------------------~~------~~pd-~~~~~~Li~~ 498 (880)
..+.+.. ....-+..-..-++.+++......+. .+ .+.+ +.++..+..
T Consensus 542 E~~~N~~--l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~- 618 (799)
T KOG4162|consen 542 EFGDNHV--LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS- 618 (799)
T ss_pred Hhhhhhh--hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-
Confidence 2222110 00000011111222222222211111 00 0111 122222211
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002795 499 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD------EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 572 (880)
Q Consensus 499 ~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd------~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~ 572 (880)
.... +...+..-.. |.. .+. .-.|+ ...|......+...++.++|...+.+..+. .....
T Consensus 619 l~a~-~~~~~~se~~-Lp~-----s~~------~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~ 684 (799)
T KOG4162|consen 619 LVAS-QLKSAGSELK-LPS-----STV------LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSA 684 (799)
T ss_pred HHHh-hhhhcccccc-cCc-----ccc------cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhH
Confidence 1110 0000000000 111 000 11233 334556666677778878877666666542 12235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHH--HHHHhhhCCCccCHHHHHHHH
Q 002795 573 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVA--LINAMAYAPFHITERQWTELF 649 (880)
Q Consensus 573 ~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~--l~~~m~~~~~~p~~~~~~~ll 649 (880)
..|......+-..|..++|.+.|...... .|+ +.+.+++...+.+.|+..-|.. ++..+.+-+ .-+...|-.+-
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 55665556677788888888888876663 343 4456666677777777555555 777776433 33566787777
Q ss_pred HHhhhccCHHHHHHHHHHHHhCCC
Q 002795 650 ESNEDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 650 ~a~~~~~~~~~a~~l~~~~~~~~~ 673 (880)
......|+.+.|...|....+...
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhcc
Confidence 788888888888888887766543
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=0.0002 Score=75.78 Aligned_cols=283 Identities=12% Similarity=0.047 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHH
Q 002795 328 HQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG-ALTYKVLVRAFWEEGKINEAVA 405 (880)
Q Consensus 328 g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d-~~~~~~Li~~~~~~g~~~~A~~ 405 (880)
++...|...+-.+... -++-|+.....+...+...|+.++|...|++..-.+ |+ +.........+.+.|+.++...
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4444444443333322 233456666666677777777777777777665543 22 2222222233345666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 002795 406 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDH 484 (880)
Q Consensus 406 ~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~~ 484 (880)
+...+....-. +...|-.-.+.+....++..|+.+-.+..+ ..|+. ..+-.--..+...+++++|.-.|.....-
T Consensus 288 L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 288 LMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCID---SEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhc---cCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 66555543211 112233333344455666667666666554 22222 22222224455667777777777766654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHH
Q 002795 485 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML-EASAT-AHQWEYFEYVYKG 562 (880)
Q Consensus 485 ~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll-~a~~~-~~~~~~A~~l~~~ 562 (880)
-+-+..+|.-|+..|...|++.+|.-+-+...+. +.-+..+.+.+. ..|.- ...-++|..+++.
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------------hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 4556677777777777777777776666655552 223444444431 22222 1334566666655
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 563 MALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 563 m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
-.+ +.|+ ....+.+...|...|..+++..+++.... ..||....+.+...+...+.+.+|++.|....
T Consensus 430 ~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 430 SLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 443 3454 33444455556667777777777766554 24666666666666666666777777666655
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00077 Score=74.71 Aligned_cols=451 Identities=13% Similarity=0.096 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH-
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL- 234 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L- 234 (880)
..+-.=++.....+.+++|+.....+...+ +.+...+..=+-++.+.+++++|+.+.+.-. -..+++..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---------~~~~~~~~~ 82 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---------ALLVINSFF 82 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---------hhhhcchhh
Confidence 344444567777889999999999998776 6677788888888889999999997665321 11122222
Q ss_pred -HHHH--HHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 235 -LAIL--GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 235 -l~~~--~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
=.+| .+.+..++|+..++-.... |..+...-...+.+.|++++|+.+|..+.+... ..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~--------------dd 143 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNS--------------DD 143 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------------ch
Confidence 3344 4678999999999844432 444666666778899999999999999977641 11
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHHcCC--------
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME---VMLQSGKYDLVHEFFRKMAKSGE-------- 380 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~g~~~~A~~l~~~m~~~g~-------- 380 (880)
-+...-..++.+-. +... ..|......| ..+|..+.+ .+...|++.+|++++....+.+.
T Consensus 144 ~d~~~r~nl~a~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~ 214 (652)
T KOG2376|consen 144 QDEERRANLLAVAA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDT 214 (652)
T ss_pred HHHHHHHHHHHHHH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccc
Confidence 12222222222211 1111 1233333344 234444333 34577889999888888733210
Q ss_pred -----CccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhCCCHH-HHHHHHHHHHhcC
Q 002795 381 -----AIGA-LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS----VYYELACCLCNNGRWQ-DAMLVVEKIKSLR 449 (880)
Q Consensus 381 -----~~d~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~Li~~~~~~g~~~-~A~~l~~~m~~~~ 449 (880)
.-+. .+---|..++-..|+.++|..+|.....++.. |.. .-|.|+..-....-++ .++..++......
T Consensus 215 ~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 215 NEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 0011 11223455667789999999999999888754 332 1222322211111111 2233333222100
Q ss_pred ---------CCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 002795 450 ---------HSKPLEITF-TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR--NDMFSKAKELFEETTR 517 (880)
Q Consensus 450 ---------~~~p~~~t~-~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~--~g~~~~A~~lf~~m~~ 517 (880)
..+-..+.. +.++..| .+..+.+.++-..+.. ..|. ..+.+++..+.+ .....+|.+++.....
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~-~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG-MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc-cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 000011111 2222222 2334444444333332 2233 334444444433 2346778888887766
Q ss_pred cCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002795 518 ANSSGYTFLSGDGAPLKPD--EYTYSSMLEASATAHQWEYFEYVYK--------GMALSGCQLDQTKHAWLLVEASRAGK 587 (880)
Q Consensus 518 ~g~~~~~~l~~~~~~~~Pd--~~t~~~ll~a~~~~~~~~~A~~l~~--------~m~~~g~~pd~~~~~~ll~~~~~~G~ 587 (880)
.. |+ ....-.++......|+++.|.+++. .+.+.+..|- +..+++..|.+.++
T Consensus 370 ~~---------------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 370 GH---------------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKD 432 (652)
T ss_pred cC---------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccC
Confidence 43 54 3455566667778899999999999 5555455544 44566777888888
Q ss_pred HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHH
Q 002795 588 CHLLEHAFDSLLEA------GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKL 661 (880)
Q Consensus 588 ~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a 661 (880)
.+.|..+++....- +-.--..++..+..--.++|+-++|..+++++... .++|..+...++.++.. -+++.|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~-~d~eka 510 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR-LDPEKA 510 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh-cCHHHH
Confidence 88888888766531 11111223333444445669999999999999853 36678888888888764 577888
Q ss_pred HHHHHHH
Q 002795 662 EKLLNAL 668 (880)
Q Consensus 662 ~~l~~~~ 668 (880)
..+-+++
T Consensus 511 ~~l~k~L 517 (652)
T KOG2376|consen 511 ESLSKKL 517 (652)
T ss_pred HHHhhcC
Confidence 8877764
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.76 E-value=4.9e-06 Score=89.64 Aligned_cols=223 Identities=17% Similarity=0.048 Sum_probs=150.5
Q ss_pred HHcCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 002795 165 LSEREMTAKNWKFVRIMNQSG-LMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (880)
Q Consensus 165 l~~~~~~~~A~~l~~~m~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~ 241 (880)
+...+..+.++.-+.++.... ..|+ ...|..+...+...|+++.|...|+.+++..+ .+..+|+.+...+...
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP----DMADAYNYLGIYLTQA 111 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHC
Confidence 333455667777777777532 1122 34577777788889999999999998887654 5678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHH
Q 002795 242 GRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV 320 (880)
Q Consensus 242 g~~~~A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~l 320 (880)
|++++|...|+...+. .| +..+|..+..++...|++++|.+.|+...+. .|+.......
T Consensus 112 g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----------------~P~~~~~~~~ 171 (296)
T PRK11189 112 GNFDAAYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----------------DPNDPYRALW 171 (296)
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------CCCCHHHHHH
Confidence 9999999999998873 44 4677888888888899999999999988874 3332222222
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---C---CccHHHHHHHHHHH
Q 002795 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG---E---AIGALTYKVLVRAF 394 (880)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g---~---~~d~~~~~~Li~~~ 394 (880)
...+...++.++|...|.+.... ..|+...+ .......|++..+ ..+..+.+.- . +....+|..+...|
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 33345567889999998765533 23332221 2223345665544 3444444221 0 11245788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 002795 395 WEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
.+.|++++|+..|++....++.
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCc
Confidence 8889999999999888877643
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=0.00057 Score=72.41 Aligned_cols=315 Identities=9% Similarity=-0.008 Sum_probs=185.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002795 340 LRKSGLKPSAATYGLAMEVMLQ--SGKYDLVHEFFRKMAKSG-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 340 m~~~g~~pd~~t~~~ll~a~~~--~g~~~~A~~l~~~m~~~g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
|....+.|+..+...-+.+++. .++...+.+.+-.+.... ++-|+.....+...+...|+.++|+..|+.....++-
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 3333445555555555555433 344444555554444333 5566777778888888888888888888877655431
Q ss_pred C--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 002795 417 G--TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 494 (880)
Q Consensus 417 p--~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~ 494 (880)
. ....|..| +.+.|++++...+...+.... .-....|-.-........++..|..+-++.....+.++..|-.
T Consensus 265 ~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alil 339 (564)
T KOG1174|consen 265 NVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALIL 339 (564)
T ss_pred hhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHh
Confidence 0 11123222 456777777777766665511 1111122222223344566777777777666644555666655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002795 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 573 (880)
Q Consensus 495 Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~ 573 (880)
-...+...|+.++|.-.|+.... +.| +..+|.-|+..|...|...+|..+-+...+. +.-+..
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~---------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~ 403 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQM---------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSAR 403 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHh---------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchh
Confidence 55667777888888888887776 445 6678888888888888888877766655432 233344
Q ss_pred HHHHHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 002795 574 KHAWLL-VEAS-RAGKCHLLEHAFDSLLEAGEIPHPLFFTE-MLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 650 (880)
Q Consensus 574 ~~~~ll-~~~~-~~G~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 650 (880)
+.+.+. ..|. ..-.-++|..+++.-.. +.|+..--.. +...+...|..+.++.++++.. ...||...-..|-.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L--~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL--IIFPDVNLHNHLGD 479 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH--hhccccHHHHHHHH
Confidence 443331 2222 22334667777776554 3455443332 3334444577888888888776 45677776666666
Q ss_pred HhhhccCHHHHHHHHHHHHhCCCCCChhhH
Q 002795 651 SNEDRISRDKLEKLLNALCNCNAASSEITV 680 (880)
Q Consensus 651 a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~ 680 (880)
-......+..+...+......++. +.-+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl 508 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPK-SKRTL 508 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence 666677777788888777777765 44333
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=6.8e-05 Score=83.34 Aligned_cols=306 Identities=12% Similarity=0.020 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
.|..+...+...|+.+.+...+.......+... ............+...|++++|..++++..+. .+.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~ 83 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-h
Confidence 344444444455666665555555544333221 11122222233455667778888777777663 2333434432 1
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 272 VTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 272 ~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
..+.. .+....+.+.+... .+ ..+.....+..+...+...|++++|...+++..+.. +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~--------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~ 146 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--AP--------------ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PD 146 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--Cc--------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Confidence 12222 33444444444331 11 022233344455556777888888888888877653 22
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE-AIGA--LTYKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGTASVY- 422 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~~d~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~- 422 (880)
+...+..+..++...|++++|..++++...... .++. ..|..+...+...|++++|..+|++...... .+.....
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 455666777777788888888888877776531 1222 3455677778888888888888888754332 1111111
Q ss_pred H--HHHHHHHhCCCHHHHHHH--HHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC---------C
Q 002795 423 Y--ELACCLCNNGRWQDAMLV--VEKIKSLR-HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP---------N 488 (880)
Q Consensus 423 ~--~Li~~~~~~g~~~~A~~l--~~~m~~~~-~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~p---------d 488 (880)
+ .++.-+...|....+..+ +....... ..............++...|+.+.|..+++.+...... .
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 223333344433322222 11111101 00111122234566677888899999999888763111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 489 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+...-...-++...|+.++|.+++......
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222222333455789999999998887764
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=9.5e-05 Score=82.60 Aligned_cols=216 Identities=9% Similarity=0.111 Sum_probs=144.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 002795 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINE 402 (880)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~ 402 (880)
-+...|+++.|..-|-+... ....+.+......+.+|..+++.+..... -..-|.-+...|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34456667766665554321 23345666777888889999888877642 23456677788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 002795 403 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 482 (880)
Q Consensus 403 A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~ 482 (880)
|.++|-+. + .++-.|..|.+.|+|.+|.++-.+... .......|.+-..-.-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 784 AEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 99888653 2 255667788999999988887666542 22233345444555667788888888876665
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 002795 483 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD--EYTYSSMLEASATAHQWEYFEYVY 560 (880)
Q Consensus 483 ~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd--~~t~~~ll~a~~~~~~~~~A~~l~ 560 (880)
. |+ .-|.+|-+.|..+..+++..+-. |+ ..|-..+..-+-..|++..|.+-|
T Consensus 852 ~---p~-----~aiqmydk~~~~ddmirlv~k~h------------------~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 852 E---PD-----KAIQMYDKHGLDDDMIRLVEKHH------------------GDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred C---ch-----HHHHHHHhhCcchHHHHHHHHhC------------------hhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 4 55 34778888888888888876632 33 235555666666778888887766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002795 561 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFD 596 (880)
Q Consensus 561 ~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~ 596 (880)
-+.- -|.+.+++|-.++.+++|.++-.
T Consensus 906 lea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 906 LEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Hhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 4432 25566677777777777766543
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=0.00011 Score=83.57 Aligned_cols=292 Identities=9% Similarity=-0.064 Sum_probs=157.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
..|++..|-++- |+..++...|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- +.|......
T Consensus 476 ~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 445554444443 44456677777777777666545566666666666666777777777776655431 122222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHH--
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSM-- 466 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~-- 466 (880)
-+..-...++.++|+.....+..- |... .+.-+.+.-...++....+.-......+ ..++..+..-..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 222223345555555555544421 0000 0000111111222222222211110111 122222222111
Q ss_pred -hCCCHHHHHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHH
Q 002795 467 -DGGHIDDCISIFQHMKDHCEPN------IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEY 538 (880)
Q Consensus 467 -~~g~~~~A~~i~~~m~~~~~pd------~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~ 538 (880)
+.-..+.....+... -.|+ ...|......+.+.+..++|...+.+.... .| ...
T Consensus 624 ~~~~~se~~Lp~s~~~---~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---------------~~l~~~ 685 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVL---PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---------------DPLSAS 685 (799)
T ss_pred hhhcccccccCccccc---CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---------------chhhHH
Confidence 111111111111111 1122 345666677778888888888777777663 34 455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHH
Q 002795 539 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEH--AFDSLLEAGEIPHPLFFTEMLI 615 (880)
Q Consensus 539 t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~ 615 (880)
.|......+...|.+++|.+.|..... +.|+ +...+++..++.+.|+...|.. ++..+.+.+ .-++..|..+..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 666666677777888888888877664 5676 5667778788888887777776 777777755 235567777777
Q ss_pred HHHHhCCHHHHHHHHHHhh
Q 002795 616 QAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 616 ~~~~~g~~~~A~~l~~~m~ 634 (880)
.+-+.|+.+.|.+.|....
T Consensus 763 v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHccchHHHHHHHHHHH
Confidence 7777788888888888764
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.67 E-value=1.7e-05 Score=85.50 Aligned_cols=152 Identities=11% Similarity=-0.014 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002795 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284 (880)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~ 284 (880)
..+.+..-+..++...+.........|..+...|...|+.++|...|++..+. -+.+...|+.+...+...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555555555554322211122344556666666666666666666666652 2234556666666666666666666
Q ss_pred HHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002795 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGK 364 (880)
Q Consensus 285 ~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 364 (880)
..|+...+. .+-+..+|..+..++...|++++|+..|+...+. .|+..........+...++
T Consensus 119 ~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~ 180 (296)
T PRK11189 119 EAFDSVLEL----------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLD 180 (296)
T ss_pred HHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCC
Confidence 666666653 2334455555555666666666666666666553 2322211111222234455
Q ss_pred hHHHHHHHHHHH
Q 002795 365 YDLVHEFFRKMA 376 (880)
Q Consensus 365 ~~~A~~l~~~m~ 376 (880)
.++|...|.+..
T Consensus 181 ~~~A~~~l~~~~ 192 (296)
T PRK11189 181 PKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=0.00014 Score=80.85 Aligned_cols=272 Identities=13% Similarity=0.060 Sum_probs=175.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhc
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t-~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~ 305 (880)
....|..+...+...|+.+.+...+....+.....++... .......+...|++++|..++++..+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------ 72 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD------------ 72 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 3556777777788888898888777776654222233222 222334567789999999999998875
Q ss_pred CCCCCCCCHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 002795 306 WDPVLEPDLVVYNAVLNACV----PSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE 380 (880)
Q Consensus 306 f~~~~~pd~~ty~~ll~~~~----~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~ 380 (880)
.+.|...++. ...+. ..+....+...+.. .....|+ ......+...+...|++++|...+++..+..
T Consensus 73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~- 144 (355)
T cd05804 73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN- 144 (355)
T ss_pred ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 3445555553 22222 24555555555544 2223343 3444556677889999999999999999976
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 002795 381 AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GTA--SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 457 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 457 (880)
+.+...+..+...|...|++++|..++++....... |+. ..|..+...+...|++++|..++++........+....
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHH
Confidence 556778889999999999999999999998875432 222 34556888899999999999999998652221222222
Q ss_pred H-H--HHHHHHHhCCCHHHHHHH---HHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 458 F-T--GLIISSMDGGHIDDCISI---FQHMKDHCEPN--IGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 458 ~-~--~ll~a~~~~g~~~~A~~i---~~~m~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
. + .++.-+...|....+.+. ........+.. .........++...|+.+.|..++..+...
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1 333334444544333333 22211111111 222235667778899999999999998774
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.65 E-value=1.9e-05 Score=77.60 Aligned_cols=200 Identities=13% Similarity=0.034 Sum_probs=125.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
....|.-.+...|++..|..-++..++.. +.+..++..+...|.+.|..+.|.+.|+.+++..+ .+-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p----~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP----NNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----CccchhhhhhH
Confidence 34455556666777777777777776665 45556666666777777777777777777666544 33446666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~t 316 (880)
.+|..|++++|...|++....+...--..||..+.-+..+.|+++.|...|.+..+. .+-...+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~----------------dp~~~~~ 175 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL----------------DPQFPPA 175 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----------------CcCCChH
Confidence 667777777777777776665333334556666666666677777777777766664 2333444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002795 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 317 y~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
.-.+.....+.|++-.|..+++.....+. ++..+.-..|..-...|+-+.+.+.=.++.+.
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55555666666777777666666665544 66666666666666666666665555555443
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00074 Score=78.50 Aligned_cols=339 Identities=15% Similarity=0.173 Sum_probs=193.8
Q ss_pred hhhhhhHHhHHHHhh--hhhhccchhhhHHhhhcccccc----CCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 002795 111 ENLRELKEMFEKDLN--WVLDDDVQLGSDYFAKNVEWHP----EKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQS 184 (880)
Q Consensus 111 e~l~~l~e~~~~~l~--~~~~~~~~~a~~~f~~~~~~~~----~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~ 184 (880)
+=..+|-|.+++++. +++.++....-..+-..+.... ....+.+....-.+......++.+++|..+|+...
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-- 1075 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-- 1075 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc--
Confidence 334456667776433 4555555544333323333110 00011111111233445556677888888887752
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH
Q 002795 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (880)
Q Consensus 185 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~ 264 (880)
.+......|+.- -++++.|.+.-+.+ ..+.+|+.+..+-.+.|.+.+|++-|-+. -|+
T Consensus 1076 ---~n~~A~~VLie~---i~~ldRA~efAe~~---------n~p~vWsqlakAQL~~~~v~dAieSyika-------dDp 1133 (1666)
T KOG0985|consen 1076 ---MNVSAIQVLIEN---IGSLDRAYEFAERC---------NEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDP 1133 (1666)
T ss_pred ---ccHHHHHHHHHH---hhhHHHHHHHHHhh---------CChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCc
Confidence 345555555553 36678888777755 34568999999999999999999877553 277
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g 344 (880)
..|.-++....+.|.+++-.+.+...++.. -+|.+. +.||-+|++.++..+-.+++
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~---------------~E~~id--~eLi~AyAkt~rl~elE~fi------- 1189 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKV---------------REPYID--SELIFAYAKTNRLTELEEFI------- 1189 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhh---------------cCccch--HHHHHHHHHhchHHHHHHHh-------
Confidence 889999999999999999999888777765 555554 37888888888887766554
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------
Q 002795 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM-------------- 410 (880)
Q Consensus 345 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m-------------- 410 (880)
..||......+..-|...+.++.|.-+|.. +.-|.-|...+...|++..|+..-++.
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 246776667777777777777777766643 233444555555555555544433221
Q ss_pred ----------HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002795 411 ----------EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 480 (880)
Q Consensus 411 ----------~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~ 480 (880)
-..++.....-...++.-|-..|.+++.+.+++.-.-.. +.....|+-|.-.|++- .+++.++.++-
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE--RAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE--RAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 112222223334456666667777776666665443211 11122344444444442 22222222222
Q ss_pred HhhC--C------CCCHHHHHHHHHHHHhcCCHHHHH
Q 002795 481 MKDH--C------EPNIGTVNAMLKVYSRNDMFSKAK 509 (880)
Q Consensus 481 m~~~--~------~pd~~~~~~Li~~~~~~g~~~~A~ 509 (880)
.-.. + .-....|+-++-.|.+-..++.|.
T Consensus 1338 FwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1338 FWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1111 0 012445666666666655555443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=5.4e-05 Score=74.45 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~ 432 (880)
.-+.-.|...|++..|..-+++.++.. +.+..+|..+...|-+.|..+.|.+.|+......+. +..+.|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334555667777777777777777664 334566667777777777777777777776665433 233345555556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 512 (880)
Q Consensus 433 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf 512 (880)
|++++|...|++........--..+|..+.-+..+.|+.+.|..+|++..+..+-...+.-.|.....+.|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 77777777777766532222223456666666666677777777777666655555556666666666677777777776
Q ss_pred HHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 513 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 564 (880)
Q Consensus 513 ~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~ 564 (880)
+.....+ .++..+....|..-...|+-+.+-+.=..+.
T Consensus 197 ~~~~~~~--------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRG--------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhcc--------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666543 3666666666666666666666555444444
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=0.00054 Score=75.27 Aligned_cols=401 Identities=12% Similarity=0.048 Sum_probs=228.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g 242 (880)
+..+..|+++.|+.+|-...... ++|...|+.-..+|+..|++.+|++=-...++..|. =.-.|+.+..++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~----w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD----WAKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc----hhhHHHHhHHHHHhcc
Confidence 46678899999999999988887 678999999999999999999998887777665542 2457889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH-H------HHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV-K------LIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 243 ~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~-~------l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
++++|+.-|.+-.+. .+-|...++-+..++ ....+. + ++..+..... .. ......
T Consensus 85 ~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~---t~---------~~~~~~ 146 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPL---TN---------YSLSDP 146 (539)
T ss_pred cHHHHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChh---hh---------hhhccH
Confidence 999999999998874 344566677777666 111111 1 1111111100 00 000111
Q ss_pred HHHHHHHHHhcC----------CCHHHHHHHHHH-----HHHCC-------CCC------------C----------HHH
Q 002795 316 VYNAVLNACVPS----------HQWKGVFWVFKQ-----LRKSG-------LKP------------S----------AAT 351 (880)
Q Consensus 316 ty~~ll~~~~~~----------g~~~~A~~l~~~-----m~~~g-------~~p------------d----------~~t 351 (880)
.|..++..+-+. ..+..|...+.. +...| ..| | ..-
T Consensus 147 ~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 147 AYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 223333222111 011111111110 00001 111 0 112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL------ 425 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~L------ 425 (880)
+..+.++..+..++..+.+-+....... -+..-++..-.+|...|.+..+...-....+.|-. ...-|+.+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3446666777778888888888877765 45666677777888888888777776666555532 12223333
Q ss_pred -HHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHhcC
Q 002795 426 -ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-GTVNAMLKVYSRND 503 (880)
Q Consensus 426 -i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~-~~~~~Li~~~~~~g 503 (880)
..+|.+.++++.|+..|.+... ....|+..+ +....+++....+...- +.|.. .-...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLt-e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALT-EHRTPDLLS---------KLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhh-hhcCHHHHH---------HHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHhcc
Confidence 3345566777888888887665 344443221 11222222222222211 11221 11111244556677
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002795 504 MFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVE 581 (880)
Q Consensus 504 ~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~ 581 (880)
++..|+..|.+++... | |...|....-+|.+.+.+..|+.-.+..++. .|+ ...|..=..+
T Consensus 373 dy~~Av~~YteAIkr~---------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD---------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAA 435 (539)
T ss_pred CHHHHHHHHHHHHhcC---------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHH
Confidence 7777777777777743 5 5667777777777777777777666655543 343 3333333334
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002795 582 ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619 (880)
Q Consensus 582 ~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 619 (880)
+-...+++.|.+.|.+-.+.+ |+..-+..-+.-|..
T Consensus 436 l~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 445567777777777766643 554444444444444
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.53 E-value=0.00043 Score=77.55 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=80.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g 242 (880)
.+..+...+.+|+.+++.+..... ...-|..+..-|+..|+++.|.++|-+. -.++-.|.+|.+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHHhccc
Confidence 344455667777777777766542 3345677888899999999999998643 24677888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 243 ~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
+++.|.++-.+... -......|-+-..-+-..|++.+|.++|-.+
T Consensus 806 kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred cHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 99999988777653 3345566766667777788888887776544
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.0014 Score=76.71 Aligned_cols=434 Identities=11% Similarity=-0.029 Sum_probs=249.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002795 170 MTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALR 249 (880)
Q Consensus 170 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~ 249 (880)
+...|+..|-...+.. +.=...|..|...|+..-+...|.+.|+.+.+..+ .+...+..+...|+....++.|..
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa----tdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA----TDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHhhccccHHHHHH
Confidence 3555665555554443 22345678888888877788888888888876543 567788888888888888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCC
Q 002795 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (880)
Q Consensus 250 lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~ 329 (880)
+.-...+......-...|....-.|...++...|..-|+...+. .+.|...|..+..+|...|.
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCc
Confidence 84433332000011222334444567778888888888888775 56788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHHcC------CCccHHHHHHHHHHHHhcCCHH
Q 002795 330 WKGVFWVFKQLRKSGLKPSAATYGLAM--EVMLQSGKYDLVHEFFRKMAKSG------EAIGALTYKVLVRAFWEEGKIN 401 (880)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~t~~~ll--~a~~~~g~~~~A~~l~~~m~~~g------~~~d~~~~~~Li~~~~~~g~~~ 401 (880)
+..|+++|.+.... .|+. +|...- ..-+..|.+.++...+..++... ...-..++-.+...+.-.|-..
T Consensus 612 y~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 612 YSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred eehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999887653 4543 333222 22367788999988888776541 1111223333333344444444
Q ss_pred HHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH---
Q 002795 402 EAVAAVRNMEQ-------RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI--- 471 (880)
Q Consensus 402 ~A~~~~~~m~~-------~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~--- 471 (880)
+|..+++.-.+ .....+...|-.+ .+|..+|-.... ..|+......+..-.-+.+..
T Consensus 689 kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~---~~vn~h~l~il~~q~e~~~~l~~~ 755 (1238)
T KOG1127|consen 689 KAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEP---SIVNMHYLIILSKQLEKTGALKKN 755 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcc---cchHHHHHHHHHHHHHhcccCcch
Confidence 45555544332 2222222223222 123344444331 134333222222212222222
Q ss_pred H---HHHHHHHHHhhCCCCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHH
Q 002795 472 D---DCISIFQHMKDHCEPNIGTVNAMLKVYSR----N----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 540 (880)
Q Consensus 472 ~---~A~~i~~~m~~~~~pd~~~~~~Li~~~~~----~----g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~ 540 (880)
+ .+.+.+-.-. ....+..+|..|+..|.+ + .+...|+..+....+.. .-+..+|
T Consensus 756 d~l~Lg~~c~~~hl-sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--------------ann~~~W 820 (1238)
T KOG1127|consen 756 DLLFLGYECGIAHL-SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--------------ANNEGLW 820 (1238)
T ss_pred hHHHHHHHHhhHHH-HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--------------hccHHHH
Confidence 2 1111111111 122345566666655544 1 23357888888887742 2355566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 002795 541 SSMLEASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL-FFTEMLIQAI 618 (880)
Q Consensus 541 ~~ll~a~~~~~~~~~A~~l~~~m~~~g~~p-d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 618 (880)
+.|-.. ...|++.-+...|-+-.. ..| ...+|..+-..|....+++-|..+|.+.... .|+.. .|--......
T Consensus 821 naLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~e 895 (1238)
T KOG1127|consen 821 NALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPE 895 (1238)
T ss_pred HHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHH
Confidence 655444 555777766665544432 333 4667777777788999999999999988774 35444 4432322333
Q ss_pred HhCCHHHHHHHHHHh----hhCCCccCHHHHHHHHHHhhhccCHHH
Q 002795 619 VQSNYEKAVALINAM----AYAPFHITERQWTELFESNEDRISRDK 660 (880)
Q Consensus 619 ~~g~~~~A~~l~~~m----~~~~~~p~~~~~~~ll~a~~~~~~~~~ 660 (880)
..|+.-++..+|..- ...|-.|+..-|.+...-....|+.+.
T Consensus 896 avG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 896 AVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred HHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 347777777777762 134445666666665555555665543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00046 Score=69.98 Aligned_cols=326 Identities=13% Similarity=0.062 Sum_probs=204.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH-HHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT-KLLA 236 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~-~Ll~ 236 (880)
+..++..+.+..++.+|++++..-.++. +-+...++.|...|-...++..|...++.+-... |...-|. --..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-----P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-----PELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHH
Confidence 4566777788889999999988877765 3477888888888888899999999998875433 3222221 1233
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL--GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~--~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
.+-+.+.+..|+++...|... |+...-..-+.+. -..+++..+..++++....+ +.
T Consensus 87 SLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------------------~A 144 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------------------EA 144 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC------------------cc
Confidence 456778899999998888652 3333332223322 34577777888877775332 34
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC------------
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA------------ 381 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~------------ 381 (880)
.+.+...-...+.|+++.|.+-|+...+. |.. ....|+..+ +..+.+++..|.+...+++++|+.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 44444444456889999999999988764 444 455677555 456778999999999999988752
Q ss_pred -cc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002795 382 -IG---------------ALTYKVLVRAFWEEGKINEAVAAVRNMEQRG-VVGTASVYYELACCLCNNGRWQDAMLVVEK 444 (880)
Q Consensus 382 -~d---------------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~ 444 (880)
|| +..+|.-...+.+.|+++.|.+.+-.|.-+. -..|+.|...+.-. -..+++.+...-+.-
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQF 301 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHH
Confidence 12 1123333444567788888888888886432 23455555544321 123445555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 445 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 516 (880)
Q Consensus 445 m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 516 (880)
+... ...| ..||..++-.||+...++.|-.++.+-... --.+...|+.|=......-..++|.+-++.+.
T Consensus 302 LL~~-nPfP-~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 302 LLQQ-NPFP-PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhc-CCCC-hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5542 2222 357888888889888888888887765442 12234444433222223345566655544443
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0045 Score=68.09 Aligned_cols=138 Identities=6% Similarity=0.028 Sum_probs=96.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
..+.|..+|..|++-+..+ .++++...++++...- +.+...|..-|+.-....+++....+|.+.+... .+..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-----LnlD 87 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-----LNLD 87 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----hhHh
Confidence 4667889999999998766 9999999999998654 6677888999999999999999999999887532 4567
Q ss_pred HHHHHHHHHHHc-CCH----HHHHHHHHHHHHcCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCC
Q 002795 230 VYTKLLAILGKA-GRP----HEALRIFNLMLEDCNLYPDI-AAYHSVAVT---------LGQVGLLKELVKLIERMRQKP 294 (880)
Q Consensus 230 ~~~~Ll~~~~~~-g~~----~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~---------~~~~g~~~~A~~l~~~m~~~g 294 (880)
.|..-|+--.+. |.. +...+.|+-.....|..+-. ..|+.-+.. |..+.+++...++|.++...+
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 788777643332 222 23334555555554544432 234444432 334456677788888888764
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00062 Score=85.85 Aligned_cols=382 Identities=11% Similarity=0.000 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT-EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
..+......+...|.+.+|..... ..+..+. ..........+...|++..+...++.+.... ...+.......
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~---~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---~~~~~~l~~~~ 415 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHAL---AAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---LLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH---HCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---HhcCcchHHHH
Confidence 344555556666777776664333 2331111 1112222334455677777777766541110 01122233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-----CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCC
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNL-----YPDI--AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~-----~pd~--~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~ 307 (880)
...+...|++++|..++........- .|.. .....+...+...|++++|...+++.....
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------- 482 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL------------- 482 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------
Confidence 55566789999999999887553111 1111 112223345567899999999999876531
Q ss_pred CCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002795 308 PVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQLRKS----GL-KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 308 ~~~~pd----~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
...+ ...++.+...+...|++++|...+.+.... |- .+-..++..+...+...|+++.|...+++....
T Consensus 483 --~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 483 --PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred --CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112 234455666678899999999999887642 11 111234555667788899999999998876653
Q ss_pred ----CCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 379 ----GEA---IGALTYKVLVRAFWEEGKINEAVAAVRNMEQR--GVVG--TASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 379 ----g~~---~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
+.. .....+..+...+...|++++|...+++.... ...+ ....+..+...+...|+++.|...+.....
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 12344556667778889999999998887643 1112 233444566677889999999998888754
Q ss_pred cCCCCCCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 448 LRHSKPLEITF-----TGLIISSMDGGHIDDCISIFQHMKDHCEPNI----GTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 448 ~~~~~p~~~t~-----~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~----~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
..........+ ...+..+...|+.+.|...+........... ..+..+..++...|++++|..++++....
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21111111111 1122344567899999998877654211111 12445667788899999999999888764
Q ss_pred CCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002795 519 NSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSG 567 (880)
Q Consensus 519 g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g 567 (880)
.. ..+..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 721 ~~---------~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 721 AR---------SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HH---------HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 20 0012222 2356666677778899999999988887653
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=1.5e-05 Score=87.91 Aligned_cols=216 Identities=17% Similarity=0.169 Sum_probs=159.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 438 (880)
Q Consensus 359 ~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A 438 (880)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.++. +....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 357788888888888888775 456788888888888888888888888888877654 455566677778888888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH-----------HHHHhCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCH
Q 002795 439 MLVVEKIKSLRHSKPLEITFTGLI-----------ISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMF 505 (880)
Q Consensus 439 ~~l~~~m~~~~~~~p~~~t~~~ll-----------~a~~~~g~~~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~ 505 (880)
+..++..... +|-. ..+. ........+....++|-.+... ..+|..+...|.-.|--.|.+
T Consensus 373 l~~L~~Wi~~---~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 373 LKMLDKWIRN---KPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHh---Cccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 8888877551 1100 0000 1112222344455566665552 447888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 002795 506 SKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEAS 583 (880)
Q Consensus 506 ~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~ 583 (880)
++|+..|+..+. ++| |..+||.|...++...+.++|...|++.++ ++|. +.+...|...|.
T Consensus 447 draiDcf~~AL~---------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 447 DRAVDCFEAALQ---------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHHHHHHHHh---------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhh
Confidence 999999999998 568 677999999999999999999999999886 6777 445556666889
Q ss_pred HcCCHHHHHHHHHHHH
Q 002795 584 RAGKCHLLEHAFDSLL 599 (880)
Q Consensus 584 ~~G~~~~A~~~~~~m~ 599 (880)
..|.+++|...|=..+
T Consensus 510 NlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 9999999988876544
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.0019 Score=81.48 Aligned_cols=343 Identities=10% Similarity=-0.003 Sum_probs=210.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH-
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV- 315 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~- 315 (880)
.+...|++..+..++..+... ....+..........+...|++++|..++......-.. -+....+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~---------~~~~~~~~~~~ 452 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKD---------RNIELDGTLQA 452 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccc---------cCcccchhHHH
Confidence 345567888777777766432 11112222234445556789999999988877543100 0000011111
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CccHH
Q 002795 316 -VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA----ATYGLAMEVMLQSGKYDLVHEFFRKMAKS----GE-AIGAL 385 (880)
Q Consensus 316 -ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~A~~l~~~m~~~----g~-~~d~~ 385 (880)
....+-..+...|++++|...+++....-...+. ...+.+...+...|+++.|...+.+.... |. ..-..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 1222233466899999999999998763111122 23455566677899999999999887753 21 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCCC--H
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQR----GVV--G-TASVYYELACCLCNNGRWQDAMLVVEKIKSLRH-SKPL--E 455 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~~p~--~ 455 (880)
++..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+...... ..+. .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 5566777888999999999998886642 221 1 223344556667788999999999888754211 1122 2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 002795 456 ITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTV-----NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528 (880)
Q Consensus 456 ~t~~~ll~a~~~~g~~~~A~~i~~~m~~~--~~pd~~~~-----~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~ 528 (880)
..+..+...+...|+.+.|...+...... .......+ ...+..+...|+.+.|..++........
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-------- 684 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-------- 684 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--------
Confidence 33444556777899999999998887541 11111111 1123445668999999999877544210
Q ss_pred CCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 529 DGAPLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEA 601 (880)
Q Consensus 529 ~~~~~~P--d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~----g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~ 601 (880)
..+ ....+..+..++...|++++|..++++.... |..++ ..++..+-.+|.+.|+.++|...+.+..+.
T Consensus 685 ----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 685 ----ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred ----ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001 1112445666777889999999998887653 33332 234555566678999999999999988764
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=0.0016 Score=74.33 Aligned_cols=242 Identities=16% Similarity=0.183 Sum_probs=147.7
Q ss_pred CCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 002795 188 FTEGQMLKLLK--GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNL----- 260 (880)
Q Consensus 188 ~~~~~~~~ll~--~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~----- 260 (880)
-|..|--.+++ .|..-|+.+.|.+-.+.+ .+..+|..|.++|.+..+++-|.-.+-.|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 45555555554 466779999988887755 45678999999999998888887777766542111
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 002795 261 ---YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337 (880)
Q Consensus 261 ---~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~ 337 (880)
.|+ .+=.-+.......|.+++|+.+|.+.++. ..|=..|-..|.|++|+++-
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~------------------------DLlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY------------------------DLLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH------------------------HHHHHHHHhcccHHHHHHHH
Confidence 122 22222333345678889999988888763 23334466678888887765
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------HHcC---------CCccHHHHHHHHHHHHhcC
Q 002795 338 KQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM----------AKSG---------EAIGALTYKVLVRAFWEEG 398 (880)
Q Consensus 338 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m----------~~~g---------~~~d~~~~~~Li~~~~~~g 398 (880)
+.--+-.+ ..||..-..-+-..++.+.|++.|++. +... -..|...|..-..-+-..|
T Consensus 850 E~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 850 ETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG 926 (1416)
T ss_pred hhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 54322222 223443444444455666666655532 1111 0123444555555555667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002795 399 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 399 ~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
+.+.|+.+|....+ |-+++...|-.|+.++|-.+-++- -|....-.|.+.|...|++.+|..+|
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777777776554 555667777777777776665442 23455666777777777777777777
Q ss_pred HHHh
Q 002795 479 QHMK 482 (880)
Q Consensus 479 ~~m~ 482 (880)
-+..
T Consensus 991 TrAq 994 (1416)
T KOG3617|consen 991 TRAQ 994 (1416)
T ss_pred HHHH
Confidence 6654
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.41 E-value=5.7e-06 Score=88.05 Aligned_cols=253 Identities=15% Similarity=0.154 Sum_probs=164.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
-+.-.|++..++.-.+ ..... ...+.....-+.+++...|+.+.++ .++.... .|.....
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~---------------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av 69 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFS---------------PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAV 69 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTST---------------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCC---------------chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHH
Confidence 3445678887776555 22211 2233445566778888899887644 4444433 6666665
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEA-IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
..+...+....+-+.+..-+.+....... .+..........+...|++++|++++..- .+.......+..|.+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHH
Confidence 54544443333444444444433333322 23333334445667789999999988652 356667778999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHH
Q 002795 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK 507 (880)
Q Consensus 432 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~----~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~ 507 (880)
.++++.|.+.++.|.+ ...| .+...+..++.. ...+.+|..+|+++.+..++++.+.|.+..++...|++++
T Consensus 144 ~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp TT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHH
T ss_pred cCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999987 3344 344445554433 3479999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC
Q 002795 508 AKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQW-EYFEYVYKGMALSGCQLD 571 (880)
Q Consensus 508 A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~-~~A~~l~~~m~~~g~~pd 571 (880)
|.+++.+..... .-|..|...++.++...|+. +.+.+.+.++... .|+
T Consensus 220 Ae~~L~~al~~~--------------~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 220 AEELLEEALEKD--------------PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHHHHHHHCCC---------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHHHHHHHhc--------------cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 999999987743 22566888888888888877 6677788877753 454
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.41 E-value=0.0011 Score=77.55 Aligned_cols=425 Identities=12% Similarity=0.038 Sum_probs=254.2
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~ 233 (880)
-..+|..|-+.++.-.+...|...|+...+.. ..+......+.+.|++..+++.|..+.-..-+..+ ...-...|..
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~--a~~~k~nW~~ 567 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP--AFACKENWVQ 567 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch--HHHHHhhhhh
Confidence 34566677777776666777888888887766 45677888999999999999999998432211111 1111233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 234 Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+.-.|.+.++...|+.-|+...+. -+.|...|..+..+|...|++..|+++|.+... ..|+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-----------------LrP~ 628 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-----------------LRPL 628 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-----------------cCcH
Confidence 555677889999999999998863 445788999999999999999999999999876 3343
Q ss_pred HHHHHHHHH--HHhcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------
Q 002795 314 LVVYNAVLN--ACVPSHQWKGVFWVFKQLRKS------GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS------- 378 (880)
Q Consensus 314 ~~ty~~ll~--~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~------- 378 (880)
.. |...-. .-+..|.+.+|+..+...... +..--..++..+...+...|-...+..+++.-++.
T Consensus 629 s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 SK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred hH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 222221 245679999999988877532 11112333444444444445555555555554432
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH---H---HHHHHHHHHHhcCCCC
Q 002795 379 GEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW---Q---DAMLVVEKIKSLRHSK 452 (880)
Q Consensus 379 g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~---~---~A~~l~~~m~~~~~~~ 452 (880)
....+...|-.+ ..|..+|-... .+ .|+......+..-+-..+.. + -+.+.+-.-.+ ..
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~ 772 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LA 772 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---Hh
Confidence 112222222222 23344444443 22 23333222222212222222 1 01111111111 11
Q ss_pred CCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 002795 453 PLEITFTGLIISSMD----G----GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 524 (880)
Q Consensus 453 p~~~t~~~ll~a~~~----~----g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~ 524 (880)
.+..+|..+...|.+ + .+...|...+....+-...+..+||.|.-. ...|.+.-|...|-+-+...
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se----- 846 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE----- 846 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-----
Confidence 113344444333322 1 222356666666666566788899887666 66688888888887776642
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH--HH-
Q 002795 525 FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSL--LE- 600 (880)
Q Consensus 525 ~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m--~~- 600 (880)
+....+|..+-..|....+.+.|.+.|..... +.|+ ...+.-.-..--..|+.-++..+|..- ..
T Consensus 847 ---------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 847 ---------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred ---------ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 23677898888888899999999999988764 4554 233322222234678888888888752 22
Q ss_pred -CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 002795 601 -AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 601 -~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
.|-.|+..-|.+.......+|+.++-+...+++
T Consensus 916 ~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 916 KEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred cccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 355567667776677777778877766665554
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.0063 Score=69.69 Aligned_cols=312 Identities=12% Similarity=0.071 Sum_probs=193.5
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH-CCC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCC
Q 002795 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQ-SGL-------MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR 223 (880)
Q Consensus 152 ~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~-~g~-------~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~ 223 (880)
..+...|..|...+.+..+.+-|.-.+-.|.. +|. ..+..+-..+.-.....|.+++|+.++.+..+
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 34556777888777777777666555544442 111 11113334444455677899999999987633
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCch-------
Q 002795 224 DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK------- 296 (880)
Q Consensus 224 ~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~------- 296 (880)
|..|=+.|-..|.+++|.++-+.--+ + .=..||..-..-+...++.+.|++.|+.......+
T Consensus 829 -------~DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 829 -------YDLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred -------HHHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 44555667788999999987665332 1 12345656666666778888888877764322100
Q ss_pred --hHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002795 297 --RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374 (880)
Q Consensus 297 --~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 374 (880)
..++.| .. -..|...|.=....+-..|+.+.|+.+|...+. |-++++..|-.|+.++|-++-++
T Consensus 898 ~p~~~e~Y---v~--~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 898 YPKQIEQY---VR--RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred ChHHHHHH---HH--hccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh
Confidence 001111 00 123344455555556678999999999987763 56688888899999999988654
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---------------CHHHHH
Q 002795 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG---------------RWQDAM 439 (880)
Q Consensus 375 m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g---------------~~~~A~ 439 (880)
.| |......|.+.|-..|++.+|+.+|-+... |...|+.|-.++ +.-.|-
T Consensus 964 ---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 964 ---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred ---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 33 667777899999999999999999987653 333333322222 222333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH---------HHHhhC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 002795 440 LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF---------QHMKDH--CEPNIGTVNAMLKVYSRNDMFSKA 508 (880)
Q Consensus 440 ~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~---------~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A 508 (880)
.+|++.. . -+...+..|-+.|.+.+|.++- +-+.+. -..|+...+-..+.++...++++|
T Consensus 1029 rYyEe~g----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1029 RYYEELG----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHcc----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 3333321 0 1233445677888887777652 222222 234677777778888888888888
Q ss_pred HHHHHHHHH
Q 002795 509 KELFEETTR 517 (880)
Q Consensus 509 ~~lf~~m~~ 517 (880)
..++....+
T Consensus 1100 V~lL~~ar~ 1108 (1416)
T KOG3617|consen 1100 VNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHH
Confidence 888776554
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0067 Score=70.96 Aligned_cols=355 Identities=11% Similarity=0.064 Sum_probs=215.4
Q ss_pred HHHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002795 177 FVRIMNQSGLM--FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254 (880)
Q Consensus 177 l~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m 254 (880)
+.++..+.+++ -|+...+..++++...+-..+-.++++.++-. +..+..+.-..|.|+-...+. +.....+..+++
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~-~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC-CcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 34444444433 34555566666666666666666666665432 122223333444444433333 333444444444
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 002795 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334 (880)
Q Consensus 255 ~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~ 334 (880)
-.- -.|+ +...+...+.+++|..+|+..- .+....+.||. .-+..+.|.
T Consensus 1047 dny--Da~~------ia~iai~~~LyEEAF~ifkkf~--------------------~n~~A~~VLie---~i~~ldRA~ 1095 (1666)
T KOG0985|consen 1047 DNY--DAPD------IAEIAIENQLYEEAFAIFKKFD--------------------MNVSAIQVLIE---NIGSLDRAY 1095 (1666)
T ss_pred ccC--Cchh------HHHHHhhhhHHHHHHHHHHHhc--------------------ccHHHHHHHHH---HhhhHHHHH
Confidence 321 1122 2233445566677777666542 23344444443 234556665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002795 335 WVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414 (880)
Q Consensus 335 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g 414 (880)
++-++.. ....|+.+..+-.+.|.+.+|..-|- +. -|+..|.-++....+.|.+++-++++.-..++.
T Consensus 1096 efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1096 EFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 5544432 33457777777777777777766552 22 256778888888888888888888887766666
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 002795 415 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 494 (880)
Q Consensus 415 ~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~ 494 (880)
-.|... +.||-+|++.++..+...++ ..|+......+-+-|...+.++.|.-+|..+.. |..
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~ 1225 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN--------FAK 1225 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh--------HHH
Confidence 555444 35778888888876654432 236777777777888888888888888775544 778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 574 (880)
Q Consensus 495 Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~ 574 (880)
|...+...|.+..|...-++. -+..||.-+--+|...+.+.-| +|....+-....-
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA-------------------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhade 1281 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA-------------------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADE 1281 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------------------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHh
Confidence 888888888888887665443 3567888888888776665544 3433333334555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHh
Q 002795 575 HAWLLVEASRAGKCHLLEHAFDSLLEAGEI-PHPLFFTEMLIQAIVQ 620 (880)
Q Consensus 575 ~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~ 620 (880)
..-|+..|-..|-+++...+++.-.. +. ...-.|+.+...|.+-
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHhc
Confidence 67788889999999998888875432 22 2344666666666543
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0091 Score=65.77 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 002795 471 IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRN---DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 546 (880)
Q Consensus 471 ~~~A~~i~~~m~~~-~~pd~~~~~~Li~~~~~~---g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a 546 (880)
.+++..+++...++ ...+.-+|..+.+---.. ...+...+.++++...- .+.|+ .+|...++.
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~------------~~~~t-Lv~~~~mn~ 375 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE------------DIDLT-LVYCQYMNF 375 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh------------ccCCc-eehhHHHHH
Confidence 45566666665553 223333333332211111 12455666677766642 13444 467788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCHH
Q 002795 547 SATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLE-AGEIPHPLFFTEMLIQAIVQSNYE 624 (880)
Q Consensus 547 ~~~~~~~~~A~~l~~~m~~~g~~p-d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~ 624 (880)
..+...+..|..+|.+..+.+..+ ++.++++++.-|| .++..-|.++|+.=.. .| -++.--...+.-+..-++-.
T Consensus 376 irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 376 IRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcch
Confidence 888899999999999999998888 6788888887665 6888999999995443 33 23334445667777779999
Q ss_pred HHHHHHHHhhhCCCccCH--HHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 002795 625 KAVALINAMAYAPFHITE--RQWTELFESNEDRISRDKLEKLLNALCNCN 672 (880)
Q Consensus 625 ~A~~l~~~m~~~~~~p~~--~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~ 672 (880)
.|..+|++....++.|+. ..|..+|.-=..-|++..+.++-+++...=
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 999999999877665554 579999998788899998888888766543
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.33 E-value=2.9e-05 Score=82.66 Aligned_cols=246 Identities=12% Similarity=0.061 Sum_probs=125.0
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002795 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHE 246 (880)
Q Consensus 167 ~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~ 246 (880)
-.|.+..++.-.+ .....-.........+.+++...|+.+.++.-.. ....|.......+...+....+-+.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~-------~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIK-------KSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS--------TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhc-------cCCChhHHHHHHHHHHHhCccchHH
Confidence 3566666654444 2222112233445566667777776554332221 1123444444444443333234444
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHh
Q 002795 247 ALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325 (880)
Q Consensus 247 A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~ 325 (880)
++.-+++.... ...+ +..........+...|++++|++++... .+.......+..|.
T Consensus 85 ~l~~l~~~~~~-~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------------------~~lE~~al~Vqi~L 142 (290)
T PF04733_consen 85 ALEELKELLAD-QAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------------------GSLELLALAVQILL 142 (290)
T ss_dssp HHHHHHHCCCT-S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------------------CcccHHHHHHHHHH
Confidence 44444443332 2221 2222222234455667777776655432 23455556666777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 002795 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ----SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKIN 401 (880)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~ 401 (880)
+.++++.|.+.++.|.+. ..|. +...+..++.. .+.+..|..+|+++... .+++..+.|.+..++...|+++
T Consensus 143 ~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp HTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HH
T ss_pred HcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHH
Confidence 777777777777777654 2333 33334444322 23567777777776554 4566677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHh
Q 002795 402 EAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW-QDAMLVVEKIKS 447 (880)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~-~~A~~l~~~m~~ 447 (880)
+|.+++.+....+.. +..+...++.+....|+. +.+.+++.++..
T Consensus 219 eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 219 EAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777777776655533 344555566666666666 555566666665
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00019 Score=72.62 Aligned_cols=299 Identities=14% Similarity=0.159 Sum_probs=190.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH
Q 002795 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (880)
Q Consensus 185 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~ 264 (880)
|+.....-+.+++..+.+..++.+|.+++..-.+..+ .+....+.|..+|-...++..|-..++++.. ..|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~ 77 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPEL 77 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHH
Confidence 3334444567777788888899999999987765443 5777888999999999999999999999986 35665
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHH--HhcCCCHHHHHHHHHHHH
Q 002795 265 AAYHS-VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA--CVPSHQWKGVFWVFKQLR 341 (880)
Q Consensus 265 ~t~~~-ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~--~~~~g~~~~A~~l~~~m~ 341 (880)
.-|.. -...+-+.+.+..|+.+...|... ++...-..-+.+ .-..+++..+..++++..
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 55543 245667889999999999888642 222222222222 235788888888888875
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 002795 342 KSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG--- 417 (880)
Q Consensus 342 ~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 417 (880)
..| +..+.+...-...+.|+++.|.+-|+...+-+ ..| ...||.-+. +.+.|+.+.|++...++.++|+..
T Consensus 140 ~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 140 SEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred CCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 433 33444444444468999999999999988764 554 667776554 456789999999999999887642
Q ss_pred ----------CH--------HHHHHHHHH-------HHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 418 ----------TA--------SVYYELACC-------LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 472 (880)
Q Consensus 418 ----------~~--------~t~~~Li~~-------~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~ 472 (880)
|+ ..-+.++.+ +.+.|+++.|.+.+-.|........|++|...+.-.-. .+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcc
Confidence 11 111222322 24566666666666666543333445555544332211 22333
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 473 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514 (880)
Q Consensus 473 ~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~ 514 (880)
...+-+.-+....+--..||..++-.||++.-++-|-.++.+
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 333333333332334456666777777777766666666554
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.32 E-value=0.002 Score=66.75 Aligned_cols=305 Identities=15% Similarity=0.107 Sum_probs=214.6
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH-HH
Q 002795 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-VY 231 (880)
Q Consensus 153 ~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~-~~ 231 (880)
.++.-.-.+-..+..+|.+.+|+.-|....+.. +.+-.++-.-...|...|+-..|+.=+..++... ||-. +-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----pDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----PDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----ccHHHHH
Confidence 445555667778888999999999998887543 3333445555667888899999999999998765 3421 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHH----H------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA----A------------YHSVAVTLGQVGLLKELVKLIERMRQKPS 295 (880)
Q Consensus 232 ~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~----t------------~~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 295 (880)
..-...+.+.|.++.|..-|+..... .|+.. . ....+..+...|+...|+.....+.+.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-- 184 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-- 184 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--
Confidence 22334678899999999999999875 33211 1 223344566678999999999988885
Q ss_pred hhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002795 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375 (880)
Q Consensus 296 ~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m 375 (880)
.+-|...|..--.+|...|.+..|+.=++..-+.. .-+..++-.+-..+...|+.+.++...++.
T Consensus 185 --------------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 185 --------------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred --------------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56788888888999999999999987776665543 235556666677778889999999988888
Q ss_pred HHcCCCccHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhCCCHHHHH
Q 002795 376 AKSGEAIGALT----YKVL---------VRAFWEEGKINEAVAAVRNMEQRGVVGTASVY---YELACCLCNNGRWQDAM 439 (880)
Q Consensus 376 ~~~g~~~d~~~----~~~L---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~Li~~~~~~g~~~~A~ 439 (880)
++.+ ||... |..| +......+++-++.+..+...+..+......| ..+..|+...+++.+|+
T Consensus 250 LKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 250 LKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 8864 55322 2111 12234567777788888777776654333333 34566677888899999
Q ss_pred HHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC
Q 002795 440 LVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 488 (880)
Q Consensus 440 ~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd 488 (880)
....+... ..|+ ..++.--..+|.-...++.|+.-|+...+..+.|
T Consensus 328 qqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 328 QQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 98888876 5555 5677777788888888888888888887743333
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=8.8e-05 Score=81.91 Aligned_cols=219 Identities=10% Similarity=0.022 Sum_probs=175.1
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEA 403 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A 403 (880)
+.+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+.+..+.. +-|..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 578999999999999998764 2267889889888999999999999999999975 55788888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 404 VAAVRNMEQRGVVGTASVYYELAC-----------CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 472 (880)
Q Consensus 404 ~~~~~~m~~~g~~p~~~t~~~Li~-----------~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~ 472 (880)
+++|+.-....++ |..+.. .+.....+....++|-++....+..+|......|--.|--.|.++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999987654321 111111 112222344556677777665665567777777777788899999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-HHHHHHHHHHHHcC
Q 002795 473 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAH 551 (880)
Q Consensus 473 ~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~-~t~~~ll~a~~~~~ 551 (880)
+|...|+.....-|-|..+||-|...++...+.++|+..|++.++ ++|.- .....|.-+|...|
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---------------LqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---------------LQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---------------cCCCeeeeehhhhhhhhhhh
Confidence 999999999987778899999999999999999999999999999 67864 46667788899999
Q ss_pred CHHHHHHHHHHHH
Q 002795 552 QWEYFEYVYKGMA 564 (880)
Q Consensus 552 ~~~~A~~l~~~m~ 564 (880)
.+++|...|-..+
T Consensus 513 ~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 513 AYKEAVKHLLEAL 525 (579)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998876554
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.28 E-value=8.8e-07 Score=60.72 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=17.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 379 GEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410 (880)
Q Consensus 379 g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m 410 (880)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00033 Score=84.18 Aligned_cols=219 Identities=9% Similarity=0.012 Sum_probs=174.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK-RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 178 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~-~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
|+.+..+. |.+...|..-+......++.+.|++++++++..-.- ...--.-+|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 33334333 566778888888899999999999999999765311 0111235788999988888999999999999988
Q ss_pred cCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 002795 257 DCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (880)
Q Consensus 257 ~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~ 335 (880)
- -|+ ..|..|...|.+.+.+++|-++|+.|.+. .......|...+..+.+..+.+.|..
T Consensus 1526 y----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK----------------F~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1526 Y----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK----------------FGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred h----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----------------hcchhhHHHHHHHHHhcccHHHHHHH
Confidence 4 243 45788999999999999999999999987 55677899999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002795 336 VFKQLRKSGLKP-SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414 (880)
Q Consensus 336 l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g 414 (880)
++.+.++.=.+- ......-.+..-.+.|+.+.++.+|+..+... +--...|+..|++-.+.|+.+.+..+|++....+
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 999988752221 22333344455578999999999999998874 4457899999999999999999999999999998
Q ss_pred CCCC
Q 002795 415 VVGT 418 (880)
Q Consensus 415 ~~p~ 418 (880)
+.|-
T Consensus 1665 l~~k 1668 (1710)
T KOG1070|consen 1665 LSIK 1668 (1710)
T ss_pred CChh
Confidence 7764
No 109
>PLN02789 farnesyltranstransferase
Probab=98.24 E-value=0.00081 Score=72.64 Aligned_cols=215 Identities=8% Similarity=-0.027 Sum_probs=154.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKG-SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
++..+-..+...+..++|+.++..+++.. +-+..+|+..-..+...| ++++++..++.++...+ .+..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np----knyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP----KNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC----cchHHhHHHH
Confidence 44445556667889999999999999876 445567777767777777 68999999999987665 5667788777
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 236 AILGKAGRP--HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 236 ~~~~~~g~~--~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
..+.+.|.. ++++.+++.+.+. -+-|..+|+....++...|+++++++.++++++. ...|
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~----------------d~~N 175 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE----------------DVRN 175 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----------------CCCc
Confidence 677777763 6788999888874 3457889999988999999999999999999986 4667
Q ss_pred HHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCc
Q 002795 314 LVVYNAVLNACVPS---HQW----KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS----GKYDLVHEFFRKMAKSGEAI 382 (880)
Q Consensus 314 ~~ty~~ll~~~~~~---g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----g~~~~A~~l~~~m~~~g~~~ 382 (880)
...|+.....+.+. |.. ++.+.+..+++... +-|...|+-+...+... +...+|..++.+..+.+ +.
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~ 253 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SN 253 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CC
Confidence 77888776665544 222 45666666666543 22556666666666552 34456777777766644 34
Q ss_pred cHHHHHHHHHHHHh
Q 002795 383 GALTYKVLVRAFWE 396 (880)
Q Consensus 383 d~~~~~~Li~~~~~ 396 (880)
+......|++.|+.
T Consensus 254 s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 HVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHh
Confidence 56677777777775
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.19 E-value=1.9e-06 Score=59.04 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
No 111
>PLN02789 farnesyltranstransferase
Probab=98.18 E-value=0.0011 Score=71.58 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=143.2
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g-~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~ 280 (880)
..++.++|+.+.+.++...+ .+..+|+..-.++...| .+++++..++.+.+. -+-+..+|+.....+.+.|..
T Consensus 49 ~~e~serAL~lt~~aI~lnP----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP----GNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 34567888888888887655 45567877777777777 579999999998874 344556677665556666653
Q ss_pred --HHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 281 --KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV 358 (880)
Q Consensus 281 --~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 358 (880)
++++.+++.+.+. .+.|..+|+...-++...|+++++++.+.++++.+.. |...|+....+
T Consensus 123 ~~~~el~~~~kal~~----------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~v 185 (320)
T PLN02789 123 AANKELEFTRKILSL----------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFV 185 (320)
T ss_pred hhHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHH
Confidence 6778888888875 5678889998888888889999999999999887644 55666665555
Q ss_pred HHHc---CCh----HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 359 MLQS---GKY----DLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE----GKINEAVAAVRNMEQRGVVGTASVYYELAC 427 (880)
Q Consensus 359 ~~~~---g~~----~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~ 427 (880)
+.+. |.. +....+..+++... +-|...|+-+...+... +...+|.+.+.+....++. +......|+.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d 263 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLD 263 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHH
Confidence 5444 222 35666666666664 55678888887777763 3345677777776654432 4455566666
Q ss_pred HHHh
Q 002795 428 CLCN 431 (880)
Q Consensus 428 ~~~~ 431 (880)
.|+.
T Consensus 264 ~~~~ 267 (320)
T PLN02789 264 LLCE 267 (320)
T ss_pred HHHh
Confidence 6654
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.14 E-value=0.013 Score=60.88 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=172.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHH-
Q 002795 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY- 267 (880)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~- 267 (880)
+..-..-+.+.+...|.+.+|+.-|..+++..+ .+-.++-.-...|...|+..-|+.-|....+ .+||-..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp----~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~AR 109 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP----NNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc----hhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHH
Confidence 444455666777777888888888877765332 2333444445567777888888877777776 46775432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
---...+.+.|.++.|..=|+...... |+..+ ...++.+ +...+++.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~-----------------~s~~~---~~eaqsk-------l~~~~e~~------ 156 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE-----------------PSNGL---VLEAQSK-------LALIQEHW------ 156 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC-----------------CCcch---hHHHHHH-------HHhHHHHH------
Confidence 222345677888888888888877643 21111 0111111 01111111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 427 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~ 427 (880)
.....+..+...|+...|+.....+++.. +-|+..|..-..+|...|++..|+.=++...+..-. ++.++..+-.
T Consensus 157 ---~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~ 231 (504)
T KOG0624|consen 157 ---VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQ 231 (504)
T ss_pred ---HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 11223344455677777777777777753 456667777777777777777777666655544322 3344444566
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHhhCCC----CCHH
Q 002795 428 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGL-------------IISSMDGGHIDDCISIFQHMKDHCE----PNIG 490 (880)
Q Consensus 428 ~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l-------------l~a~~~~g~~~~A~~i~~~m~~~~~----pd~~ 490 (880)
.+...|+.+.++...++..+ ..||...+-.. +......+++.++..-.+...+.-+ ....
T Consensus 232 L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 66777777777777777665 45554321110 0112233444444444444443211 1122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMAL 565 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~~~~A~~l~~~m~~ 565 (880)
.+..+-.+|...|++.+|++...+.+. +.|| +.++.--..+|.-...++.|..-|+...+
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~---------------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLD---------------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHh---------------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 233344455555666666666666655 3353 55555555555555666666666655554
No 113
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.022 Score=63.05 Aligned_cols=376 Identities=13% Similarity=0.026 Sum_probs=214.7
Q ss_pred hHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 119 MFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLK 198 (880)
Q Consensus 119 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~ 198 (880)
..++...-...++.+.|+..|...+. -..++-..|..-..++...++|++|+.=-..-++.. +.=...|+....
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~-----l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIM-----LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGA 78 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHc-----cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHH
Confidence 34455555677888999999988777 333456677778889999999999987666655544 333578999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHcCCCCCCH--------HHHH
Q 002795 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL--MLEDCNLYPDI--------AAYH 268 (880)
Q Consensus 199 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~--m~~~~g~~pd~--------~t~~ 268 (880)
++.-.|++++|..-|..-++..+ .+...++.|..++.-... +.+.|.. |.. ++.-++ ..|.
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~----~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~--~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDP----SNKQLKTGLAQAYLEDYA---ADQLFTKPYFHE--KLANLPLTNYSLSDPAYV 149 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCC----chHHHHHhHHHhhhHHHH---hhhhccCcHHHH--HhhcChhhhhhhccHHHH
Confidence 99999999999999998776543 677888888888721111 1111110 000 011111 1233
Q ss_pred HHHHHHHhc-------CCHHHHHHHHHHHHhCCchhHhhhh---hhcCCCCCCC------------C----------HHH
Q 002795 269 SVAVTLGQV-------GLLKELVKLIERMRQKPSKRIKNMH---RKNWDPVLEP------------D----------LVV 316 (880)
Q Consensus 269 ~ll~~~~~~-------g~~~~A~~l~~~m~~~g~~~l~~m~---~~~f~~~~~p------------d----------~~t 316 (880)
.++..+-+. .+........-.+...+ +..++ ......+..| | ..-
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVD---ELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCc---cccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 333322111 01111111111111100 00000 0000000111 1 112
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH-------
Q 002795 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV------- 389 (880)
Q Consensus 317 y~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~------- 389 (880)
+-.+.++.-+..++..|++-+....... -+..-++..-.++...|.+.++...-...++.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777778889999999999888754 35555666777888899888888877777776632 1222332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------------------HHHHHHHhCCCHHHHHHHHHH
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYY-------------------------ELACCLCNNGRWQDAMLVVEK 444 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------------------------~Li~~~~~~g~~~~A~~l~~~ 444 (880)
+..+|.+.++++.|+..|.+....-..|+...-. .-...+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3346677788999999999877655444332210 012234556666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 445 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 445 m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
+.. . .+-|...|....-+|.+.|.+..|..--+...+..++....|.-=..++.-..++++|++.|++.++
T Consensus 384 AIk-r-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 384 AIK-R-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHh-c-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655 1 1223345666666666666666666655554443333444444444444444566666666666655
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.0015 Score=78.86 Aligned_cols=204 Identities=10% Similarity=0.078 Sum_probs=166.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPS---AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd---~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~ 385 (880)
.+-....|-..|....+.++.++|.+++++.+.. ++.-. .-.|.++++.-..-|.-+...++|+++.+.. . -..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence 4455678999999999999999999999998753 11111 2346666666666788888999999998864 2 267
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL---EITFTGLI 462 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~---~~t~~~ll 462 (880)
+|..|...|.+.+.+++|.++|+.|.++=- -....|...+..+.++.+-+.|..++.+... .-|. .....-..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHH
Confidence 889999999999999999999999997632 3556799999999999999999999999887 3343 22344445
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 463 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 463 ~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
..-.+.|+.+.++.+|+......|.-...|+..|++-.+.|+.+.+..+|++....+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 566789999999999999998777788999999999999999999999999999977
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.0003 Score=79.74 Aligned_cols=213 Identities=13% Similarity=0.087 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 002795 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274 (880)
Q Consensus 195 ~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~ 274 (880)
.+...+...|-...|..+|++. ..|..+|.+|...|+..+|..+..+..++ +||+..|..+.+..
T Consensus 403 ~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhc
Confidence 3344444445555555555433 23444455555555555555544444432 34555555554444
Q ss_pred HhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002795 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354 (880)
Q Consensus 275 ~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 354 (880)
...-.+++|.++++...... -..+-....+.++++++.+.|+.-.+.. ..-..+|-.
T Consensus 468 ~d~s~yEkawElsn~~sarA----------------------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~ 524 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARA----------------------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFG 524 (777)
T ss_pred cChHHHHHHHHHhhhhhHHH----------------------HHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHh
Confidence 44444444444444432210 0000000112344555554444433321 112333444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 434 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 434 (880)
+--+..+.+++..|.+.|...+.-. +-+...||.+-.+|.+.|+-.+|...+.+..+-+..+.. .|..-+....+.|.
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge 602 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGE 602 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhccc
Confidence 4444444555555555554444432 223444555555555555555555555555444432222 13333333444555
Q ss_pred HHHHHHHHHHHHh
Q 002795 435 WQDAMLVVEKIKS 447 (880)
Q Consensus 435 ~~~A~~l~~~m~~ 447 (880)
+++|+..+.++..
T Consensus 603 ~eda~~A~~rll~ 615 (777)
T KOG1128|consen 603 FEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.97 E-value=0.00091 Score=69.50 Aligned_cols=187 Identities=10% Similarity=0.009 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcc--
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS----AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG-- 383 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d-- 383 (880)
.......+..+...+...|++++|...|+++.... |+ ..++..+..++...|++++|...++.+++......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45566677777778888888888888888887643 32 23556677788888888888888888887642111
Q ss_pred HHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH
Q 002795 384 ALTYKVLVRAFWEE--------GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455 (880)
Q Consensus 384 ~~~~~~Li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~ 455 (880)
..++..+..++... |+.+.|.+.|+.+....+.. ...+..+... +... ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~----~~~~------~~~~--------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRM----DYLR------NRLA--------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHH----HHHH------HHHH---------
Confidence 12455555555554 66778888888877765432 2222111110 0000 0000
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 456 ITFTGLIISSMDGGHIDDCISIFQHMKDHC---EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 456 ~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~---~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.....+...|.+.|++..|...|....+.. +.....+..+..++.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011244566888999999999999988742 234678899999999999999999999888764
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.96 E-value=0.00092 Score=69.46 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=122.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhh
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-I---AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd-~---~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m 301 (880)
.....+..+...+...|++++|...|+++... .|+ . .++..+..++...|++++|...++.+.+...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p------ 101 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP------ 101 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc------
Confidence 45667777888888888899998888888764 232 2 3567777888888999999999888877531
Q ss_pred hhhcCCCCCCCCH-HHHHHHHHHHhcC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 002795 302 HRKNWDPVLEPDL-VVYNAVLNACVPS--------HQWKGVFWVFKQLRKSGLKPSA-ATYGLAMEVMLQSGKYDLVHEF 371 (880)
Q Consensus 302 ~~~~f~~~~~pd~-~ty~~ll~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l 371 (880)
..|.. .++..+..++.+. |+.+.|...|+.+.+. .|+. ..+..+... .. .
T Consensus 102 --------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------ 161 (235)
T TIGR03302 102 --------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------ 161 (235)
T ss_pred --------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------
Confidence 11111 2344444445443 7788999999998865 3432 222221111 00 0
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV-G-TASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 372 ~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.... ......+...|.+.|++.+|...|+...+.... | ....+..+..++.+.|++++|..+++.+..
T Consensus 162 ~~~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 162 RNRL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0000 011224666788999999999999998876432 2 345677889999999999999999888875
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.96 E-value=0.00045 Score=78.33 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 465 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~ 465 (880)
.-..+...+...|-...|..+|++... |...|.+|+..|+...|..+..+..+ ..|+..-|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhc
Confidence 344567778889999999999987653 77789999999999999888887765 568888898888888
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHH
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSML 544 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll 544 (880)
...--++.|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ | -..||-.+-
T Consensus 468 ~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---------------plq~~~wf~~G 526 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN---------------PLQLGTWFGLG 526 (777)
T ss_pred cChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC---------------ccchhHHHhcc
Confidence 8888889999998887653 11112222334789999999999888743 4 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCH
Q 002795 545 EASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNY 623 (880)
Q Consensus 545 ~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 623 (880)
.+..+.++++.|.+.|..... ..|| ...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|.+.+.....-|.+
T Consensus 527 ~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccH
Confidence 888888999999999988775 5777 6789999999999999999999999988877 45566788888888888999
Q ss_pred HHHHHHHHHhhh
Q 002795 624 EKAVALINAMAY 635 (880)
Q Consensus 624 ~~A~~l~~~m~~ 635 (880)
++|++.+.++..
T Consensus 604 eda~~A~~rll~ 615 (777)
T KOG1128|consen 604 EDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHH
Confidence 999999998863
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0013 Score=66.26 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=78.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 002795 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273 (880)
Q Consensus 194 ~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~ 273 (880)
..+-..+.-.|+-+.+..+....... ...|....+.++....+.|++.+|...|++... .-++|..+|+.+..+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA----YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc----CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHH
Confidence 44444444445555554444433211 113444444455555555555555555555554 344555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002795 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (880)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (880)
|.+.|++++|..-|.+..+. ..-+...+|.|.-.|.-.|+.+.|..++......+.. |...-.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L----------------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~ 206 (257)
T COG5010 144 LDQLGRFDEARRAYRQALEL----------------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQ 206 (257)
T ss_pred HHHccChhHHHHHHHHHHHh----------------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHH
Confidence 55555555555555555553 2333444455555555555555555555555544322 333334
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 002795 354 LAMEVMLQSGKYDLVHEFFR 373 (880)
Q Consensus 354 ~ll~a~~~~g~~~~A~~l~~ 373 (880)
.+..+....|+++.|+.+..
T Consensus 207 NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHhhcCChHHHHhhcc
Confidence 44444555555555555543
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0019 Score=65.15 Aligned_cols=165 Identities=13% Similarity=0.036 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
|..+ ..+-..+.-.|+-+.+..+...... ..+-|....+..+....+.|++.+|...|.+....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------------- 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL------------- 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-------------
Confidence 4444 5666677777888887777777554 23445566667888888888888888888888775
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHH
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALT 386 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~ 386 (880)
.++|..+|+.+--+|.+.|++++|..-|.+..+.-.. +...++.+.-.+.-.|+++.|..++......+ ..|..+
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v 204 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRV 204 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHH
Confidence 6788888888888888888888888888888764221 44556777777778888888888888877764 346777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 387 YKVLVRAFWEEGKINEAVAAVRNMEQ 412 (880)
Q Consensus 387 ~~~Li~~~~~~g~~~~A~~~~~~m~~ 412 (880)
-..|.......|+++.|..+-..-..
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhcccccc
Confidence 77788888888888888877655443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.87 E-value=0.0016 Score=77.49 Aligned_cols=169 Identities=11% Similarity=0.070 Sum_probs=135.3
Q ss_pred chhhhhhHHhHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 002795 110 RENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT 189 (880)
Q Consensus 110 re~l~~l~e~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~ 189 (880)
++-+.++++++++.-. ...+..++.-.... .+.+..+++++..|.....+.|.+++|..+++...+.. +-+
T Consensus 49 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~ 119 (694)
T PRK15179 49 RELLQQARQVLERHAA---VHKPAAALPELLDY-----VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDS 119 (694)
T ss_pred HHHHHHHHHHHHHhhh---hcchHhhHHHHHHH-----HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCc
Confidence 4556677777776321 22222222221111 12567789999999999999999999999999999876 566
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
......+...+.+.+++++|+...+..+...+ .+....+.+..++.+.|++++|..+|++.... .+-+..++..
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p----~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~ 193 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGS----SSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVG 193 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 77888999999999999999999999987665 56788999999999999999999999999973 3334788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
+..++-..|+.++|...|+.....
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=0.0034 Score=75.42 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF 394 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~ 394 (880)
..+..+..+|-+.|+.++|..+|+++.+.. .-|..+.|.+...|+.. ++++|.+++.+.+.. |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 345555555666666666666666666554 22555556666666555 666666665555443 3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 395 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
...+++..+.+++.++....+. +.+.-..+.+.+....+..--..++-.+...|-...+++++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 3333444444444444433221 11222222233322112222223344444555566666666
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHH
Q 002795 475 ISIFQHMKDHCEPNIGTVNAMLKVYS 500 (880)
Q Consensus 475 ~~i~~~m~~~~~pd~~~~~~Li~~~~ 500 (880)
..+++.+.+..+.|.....-++.+|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 67666666655556555555655554
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.86 E-value=0.12 Score=60.70 Aligned_cols=509 Identities=11% Similarity=0.030 Sum_probs=272.8
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC
Q 002795 164 RLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR 243 (880)
Q Consensus 164 ~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~ 243 (880)
.+.+.|+.++|..+++.....+. .|..|...+-..|...+..++|..+++++.... |+......+..+|++.+.
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~-----P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY-----PSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC-----CcHHHHHHHHHHHHHHHH
Confidence 45678999999999988877663 488888999999999999999999999987643 556677778888899888
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 244 PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL----------LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 244 ~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~----------~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+.+-.+.=-+|-+ .++-+.+.+-++++.+.+.-. ..-|...++.+.+.++ .--+
T Consensus 126 yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g--------------k~~s 189 (932)
T KOG2053|consen 126 YKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG--------------KIES 189 (932)
T ss_pred HHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC--------------ccch
Confidence 8765555445544 234456666667776655421 1234445555544321 1112
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLR-KSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
..-...-+..+...|++++|++++..=. +.-..-+...-+.-+..+...+++.+..++-.++...|. |- |...+.
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~ 265 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHH
Confidence 2222233344556788999999994433 332233555556677788899999999999999999873 32 333333
Q ss_pred HHH----------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH
Q 002795 393 AFW----------------EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 456 (880)
Q Consensus 393 ~~~----------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 456 (880)
.+. ..+..+...+..++.........-..+-.+..-+..-|+.++++..|-+-. |..|
T Consensus 266 sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf---g~kp--- 339 (932)
T KOG2053|consen 266 SVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF---GDKP--- 339 (932)
T ss_pred HHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh---CCCc---
Confidence 222 223334444444333332111111112222333345577777665544322 2333
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH-------HHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCcc
Q 002795 457 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-------GTVNAMLKVYSRNDM-----FSKAKELFEETTRANSSGYT 524 (880)
Q Consensus 457 t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~-------~~~~~Li~~~~~~g~-----~~~A~~lf~~m~~~g~~~~~ 524 (880)
.|..=+..|..+=..+....++....... ++. .-+.+.+..-.-.|. .+.-..++.+....-.+.
T Consensus 340 cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~-~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g-- 416 (932)
T KOG2053|consen 340 CCAIDLNHYLGHLNIDQLKSLMSKLVLAD-DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG-- 416 (932)
T ss_pred HhHhhHHHhhccCCHHHHHHHHHHhhccC-CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc--
Confidence 22222333333333344444444433210 110 012222222222331 223333333322211000
Q ss_pred ccCCCCCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHHcCCHHHHH
Q 002795 525 FLSGDGAPLKPDEY---------TYSSMLEASATAHQWEYFEYVYKGMALSGC--QL-DQTKHAWLLVEASRAGKCHLLE 592 (880)
Q Consensus 525 ~l~~~~~~~~Pd~~---------t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~--~p-d~~~~~~ll~~~~~~G~~~~A~ 592 (880)
..-+.++-|... +-+.|+..|-+.++.....+...- .+.|+ .| |..+--.+|..|+-.|-+..|.
T Consensus 417 --ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L-LE~glt~s~hnf~~KLlLiriY~~lGa~p~a~ 493 (932)
T KOG2053|consen 417 --LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL-LENGLTKSPHNFQTKLLLIRIYSYLGAFPDAY 493 (932)
T ss_pred --ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHhhcCCccHHHHHHHHHHHHHhcCChhHH
Confidence 000112233322 346777888888877644333322 22333 22 3445567889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhhccCHHHHHHHH---HHH
Q 002795 593 HAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNEDRISRDKLEKLL---NAL 668 (880)
Q Consensus 593 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~a~~~~~~~~~a~~l~---~~~ 668 (880)
++|..|.-+.+.-|...|. +...+...|++..+...++....- +.-+. .+-..+.-|| +.|.+.+..++. ++|
T Consensus 494 ~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL 570 (932)
T KOG2053|consen 494 ELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRL 570 (932)
T ss_pred HHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHH
Confidence 9999988788887776665 445555557777777776665310 00001 1112222333 345555444443 333
Q ss_pred HhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccc-----ccccccccccc
Q 002795 669 CNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHF-----GSQAIDISPLH 716 (880)
Q Consensus 669 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~-----~~~~v~~~~l~ 716 (880)
..+... .+...-...++.++..++...-.+.+.. ..+.|.|..|.
T Consensus 571 ~~S~q~---~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~L~ 620 (932)
T KOG2053|consen 571 MHSLQK---WACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVSLS 620 (932)
T ss_pred HHHHHH---HHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhccccccc
Confidence 333221 1222223367777777776554444322 23346665553
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.83 E-value=0.0022 Score=76.34 Aligned_cols=149 Identities=9% Similarity=-0.057 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH
Q 002795 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (880)
Q Consensus 185 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~ 264 (880)
.++.+...+-.|.....+.|++++|..+++.++...| .+......+..++.+.+++++|+..+++.... -+-+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P----d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~ 154 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP----DSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSA 154 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCH
Confidence 3345566777777777777777777777777766544 35566667777777777777777777777663 22234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g 344 (880)
...+.+..++.+.|++++|..+|++.... .+-+..++..+-.++-..|+.++|...|+...+.-
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----------------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQ----------------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhc----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45555666667777777777777777653 33346666666667777777777777777766432
Q ss_pred CCCCHHHHHHHH
Q 002795 345 LKPSAATYGLAM 356 (880)
Q Consensus 345 ~~pd~~t~~~ll 356 (880)
.|....|+..+
T Consensus 219 -~~~~~~~~~~~ 229 (694)
T PRK15179 219 -GDGARKLTRRL 229 (694)
T ss_pred -CcchHHHHHHH
Confidence 23444444433
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.77 E-value=0.0029 Score=63.57 Aligned_cols=150 Identities=8% Similarity=0.062 Sum_probs=100.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
+..|...|+++.+....+.+.. |. . .+...++.+++...+....+. .+.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~~~~~i~~l~~~L~~----------------~P~~~ 73 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQTPEAQLQALQDKIRA----------------NPQNS 73 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchhHHHHHHHHHHHHHH----------------CCCCH
Confidence 4457777777765444332221 11 0 122355666777777776665 56677
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHcCCCccHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVM-LQSGK--YDLVHEFFRKMAKSGEAIGALTYKVLV 391 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~--~~~A~~l~~~m~~~g~~~d~~~~~~Li 391 (880)
..|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+.
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA 151 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLA 151 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 7888888888888888888888888776542 2556666666653 56666 478888888888875 44677777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 002795 392 RAFWEEGKINEAVAAVRNMEQRGV 415 (880)
Q Consensus 392 ~~~~~~g~~~~A~~~~~~m~~~g~ 415 (880)
..+.+.|++++|+..|+++.+...
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888888877654
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.77 E-value=0.0065 Score=73.14 Aligned_cols=239 Identities=10% Similarity=0.101 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhh
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS-VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRK 304 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~-ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~ 304 (880)
.+...|..|+..|...+++++|.++.+...+ ..|+...+-. +...+.+.++.+.+..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 4567889999999899999999999996665 5887654332 23355566665544443
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH
Q 002795 305 NWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA 384 (880)
Q Consensus 305 ~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~ 384 (880)
.++.......++.-+..++..|...+ -+...+-.+..+|-+.|+.+++..+++++++.. +-|+
T Consensus 88 --------------~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~ 150 (906)
T PRK14720 88 --------------NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNP 150 (906)
T ss_pred --------------hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccH
Confidence 23333444455544555555665532 245577888899999999999999999999987 6789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 464 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a 464 (880)
.+.|.+...|+.. ++++|.+++.+...+ |....++..+..++.++.. ..|+.+.+
T Consensus 151 ~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~------ 205 (906)
T PRK14720 151 EIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDF------ 205 (906)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchH------
Confidence 9999999999999 999999998887654 6667788899999999987 33443221
Q ss_pred HHhCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHH
Q 002795 465 SMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSS 542 (880)
Q Consensus 465 ~~~~g~~~~A~~i~~~m~~--~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ 542 (880)
-.++.+.+.. +...-+.++-.+-..|-...+++++..+|+.+++.. .-|..+..-
T Consensus 206 ---------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--------------~~n~~a~~~ 262 (906)
T PRK14720 206 ---------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--------------NKNNKAREE 262 (906)
T ss_pred ---------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--------------CcchhhHHH
Confidence 1222233322 123445667777788888999999999999999953 236667777
Q ss_pred HHHHHHHc
Q 002795 543 MLEASATA 550 (880)
Q Consensus 543 ll~a~~~~ 550 (880)
++.+|...
T Consensus 263 l~~~y~~k 270 (906)
T PRK14720 263 LIRFYKEK 270 (906)
T ss_pred HHHHHHHH
Confidence 77777643
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.73 E-value=0.031 Score=61.37 Aligned_cols=185 Identities=15% Similarity=0.143 Sum_probs=136.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
..|+...+...+.+......-..+..++.+-.+. .-...-|...+ .+...|+++.|+..++.+++. .+-|+..+..
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~ 345 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLEL 345 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHH
Confidence 5677777777777655443333333333332221 11233344444 356789999999999998886 3567778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g 469 (880)
....+.+.++..+|.+.++.+....+.. ...+-.+..+|.+.|++.+|+.+++.... ..+-|...|..|-.+|...|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhC
Confidence 8899999999999999999999876543 44555688899999999999999999876 34456678999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 470 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 470 ~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+..++..-.. .+|...|+++.|+..+....+.
T Consensus 423 ~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 9887766544 4466789999999999988886
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.72 E-value=0.0013 Score=66.02 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=102.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH-HHcCC--H
Q 002795 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL-GKAGR--P 244 (880)
Q Consensus 168 ~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~-~~~g~--~ 244 (880)
.+..+++...++...+.. +.+...|..+...|...|+++.|...|+.+++..+ .+..++..+..++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P----~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG----ENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCc
Confidence 556678888888888776 78899999999999999999999999999988765 5778888888864 67777 5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 245 ~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
++|..++++..+. .+-+..++..+...+.+.|++++|...++.+.+.
T Consensus 127 ~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 127 PQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999984 3446788888999999999999999999999886
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.032 Score=56.54 Aligned_cols=151 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH
Q 002795 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (880)
...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+. -+..
T Consensus 115 a~i~~~~~~~deAl~~~~~~~---------------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE---------------------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 345666677777766655521 1122222223344555666666667766653 2445
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002795 351 TYGLAMEVMLQ----SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELA 426 (880)
Q Consensus 351 t~~~ll~a~~~----~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li 426 (880)
|.+-|..++.+ .+.+..|.-+|++|-++ .+|+..+.|-+..++...|++++|..++++.+.+... +..+...+|
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHH
Confidence 55555555432 34466667777776654 3566666666666666777777777777776666544 333444444
Q ss_pred HHHHhCCCHH-HHHHHHHHHHh
Q 002795 427 CCLCNNGRWQ-DAMLVVEKIKS 447 (880)
Q Consensus 427 ~~~~~~g~~~-~A~~l~~~m~~ 447 (880)
.+-...|+.. ...+.+.+++.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHh
Confidence 4444444432 23344444444
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.018 Score=57.89 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~ 310 (880)
|..+.-+...+|+.+.|...++.+..+..-.+-+.-...+ .+-..|++++|.++|+.+.+. .
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~d----------------d 116 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLED----------------D 116 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhcc----------------C
Confidence 4444444444555555555555555431101111111111 123344555555555555443 3
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK 377 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~ 377 (880)
+.|.++|-.-+...-..|+..+|++-+.+..+. +..|...|.-+-..|...|+++.|.-.+++++-
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 334444444343333344444444444443332 233444444444444444555444444444444
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.016 Score=58.67 Aligned_cols=136 Identities=11% Similarity=0.174 Sum_probs=61.9
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHH
Q 002795 464 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM 543 (880)
Q Consensus 464 a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~l 543 (880)
.|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|..- -+..|.+-|
T Consensus 117 i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----------------ded~tLtQL 175 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQI----------------DEDATLTQL 175 (299)
T ss_pred HhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------------chHHHHHHH
Confidence 3455555555555544411 2233333333344445555555555555442 233444444
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002795 544 LEASATA----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619 (880)
Q Consensus 544 l~a~~~~----~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 619 (880)
..++.+. +.+..|.-+|++|.++ ..|+..+.+-...++...|++++|..+++....+.. .++.+..+++.....
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHH
Confidence 4444333 3345555555555431 445555555555555555555555555555544332 223333334444444
Q ss_pred hCC
Q 002795 620 QSN 622 (880)
Q Consensus 620 ~g~ 622 (880)
.|.
T Consensus 254 ~Gk 256 (299)
T KOG3081|consen 254 LGK 256 (299)
T ss_pred hCC
Confidence 443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.70 E-value=0.0013 Score=62.44 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
+..+...+...|++++|...|+.++...+ .+..+|..+..++.+.|++++|...|+..... .+.+..++..+..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~ 100 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP----WSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 55567777888888888888888876554 56778888888888888888888888888873 4456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 002795 273 TLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~ 293 (880)
++...|++++|...|......
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888774
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.66 E-value=6.1e-05 Score=51.91 Aligned_cols=33 Identities=18% Similarity=0.488 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd 348 (880)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.64 E-value=0.0019 Score=61.31 Aligned_cols=101 Identities=9% Similarity=-0.093 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
.+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...|+.++...+ .+...+..+..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----~~~~a~~~lg~ 100 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----SHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHHH
Confidence 35556778889999999999999999887 67889999999999999999999999999998655 57789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIA 265 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~ 265 (880)
++...|++++|+..|+...+. .|+..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~---~p~~~ 126 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKM---SYADA 126 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCh
Confidence 999999999999999999874 45443
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.59 E-value=9e-05 Score=50.81 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
.+||++|.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.58 E-value=0.0023 Score=59.85 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=76.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 178 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
|+...... +.+......+...+...|++++|...|+.+....+ .+...|..+...+.+.|++++|..+|+...+.
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP----YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444333 23445566666777778888888888887766543 46677778888888888888888888877663
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 258 CNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 258 ~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
.+.+..++..+...+...|++++|...|+...+.
T Consensus 81 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 --DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred --CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445667777777788888888888888877763
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.54 E-value=0.00013 Score=50.24 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 418 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 418 (880)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.52 E-value=0.0035 Score=58.62 Aligned_cols=106 Identities=13% Similarity=0.012 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
+......+...+...|++++|...|+.+... .+.+...|..+...+...|++++|...++.....
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------- 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL------------- 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 4556667777788888888888888887763 3446677777888888888888888888887664
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+.+...|..+...|...|++++|...|+...+. .|+...+
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 4456667777777788888888888888877764 3444443
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.50 E-value=0.027 Score=61.75 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=64.5
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCH
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLL 280 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd-~~t~~~ll~~~~~~g~~ 280 (880)
..|.++.|+..+..+++..| .|++.+......+.+.++..+|.+.|+.+... .|+ ...+-.+..+|.+.|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P----~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP----DNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 44566666666666555433 45555555566666666666666666666552 343 34444455556666666
Q ss_pred HHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 002795 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337 (880)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~ 337 (880)
.+|..++...... .+-|...|..|-.+|...|+..++..-.
T Consensus 391 ~eai~~L~~~~~~----------------~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 391 QEAIRILNRYLFN----------------DPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHHHhhc----------------CCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 6666666665554 4455566666666666666665555443
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.45 E-value=0.0002 Score=49.00 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 417 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 417 (880)
.+||++|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.12 Score=52.03 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=75.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 002795 425 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 504 (880)
Q Consensus 425 Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~ 504 (880)
++-+....|+.+.|...++.+...-...+-+.-+.+++ +-..|++++|+++++.+.+..+.|.+++---+...-..|+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 33444455555556555555554111111111111111 2234555666666666555445555555554444444555
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH-
Q 002795 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEA- 582 (880)
Q Consensus 505 ~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~-~~~~~ll~~~- 582 (880)
.-+|++-+....+. +.-|...|.-+-..|...|++++|.-.+++++- +.|.. ..+..+-..+
T Consensus 136 ~l~aIk~ln~YL~~--------------F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--------------FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLY 199 (289)
T ss_pred cHHHHHHHHHHHHH--------------hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHH
Confidence 55555555555553 344556666666666666666666666655553 33432 2222333322
Q ss_pred H--HcCCHHHHHHHHHHHHH
Q 002795 583 S--RAGKCHLLEHAFDSLLE 600 (880)
Q Consensus 583 ~--~~G~~~~A~~~~~~m~~ 600 (880)
. -..+++.|...|.+..+
T Consensus 200 t~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALK 219 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 1 12244455555555554
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.33 E-value=0.0056 Score=67.56 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
-.....|++.+...++++.|..+|+.+.+.. |+ +...|+..+...++-.+|.+++++..+. .+-|......
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-----pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~ 239 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD-----PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNL 239 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-----Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3455677788888899999999999997643 33 4556888888899999999999999874 4456777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR 341 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~ 341 (880)
-...|.+.++++.|+.+.+++... .+-+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~l----------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVEL----------------SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788899999999999999999985 34455599999999999999999999998874
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.28 E-value=0.67 Score=54.72 Aligned_cols=224 Identities=15% Similarity=0.130 Sum_probs=155.4
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCH
Q 002795 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGL--GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (880)
Q Consensus 167 ~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~ 244 (880)
..+++..|+.....+.+.. |+. .|..+++++ .+.|+.++|..+++.....+. .|..+...+-..|...+..
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhh
Confidence 4678889998888877653 333 345555555 588999999999987754332 4889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHH
Q 002795 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC 324 (880)
Q Consensus 245 ~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~ 324 (880)
++|..+|++.... .|+..-...+..+|.+.+.+.+-.++--+|-+. .+.+...+=++++.+
T Consensus 94 d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----------------~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 94 DEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----------------FPKRAYYFWSVISLI 154 (932)
T ss_pred hHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CCcccchHHHHHHHH
Confidence 9999999999864 677777778888899998887655554444443 344445444555554
Q ss_pred hcCC----------CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHHHcCCCccHHHHHHHHH
Q 002795 325 VPSH----------QWKGVFWVFKQLRKSG-LKPSAATYGLAMEVMLQSGKYDLVHEFF-RKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 325 ~~~g----------~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~A~~l~-~~m~~~g~~~d~~~~~~Li~ 392 (880)
.+.- -..-|...++.+.+.+ -.-+..-.-.-+..+-..|++++|..++ ....+.-...+...-+--+.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4321 1233556666666543 1112222223344456789999999999 44444444556666677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 002795 393 AFWEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 393 ~~~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
.+...+++.+..++-.++..+|..
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCc
Confidence 899999999999999999888753
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.20 E-value=0.00036 Score=46.54 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 345 (880)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.20 E-value=0.0028 Score=70.27 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS--GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~ 387 (880)
.+.+.+....+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 5667777888888888888888888888888754 22222345568999999999999999999888888999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002795 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432 (880)
Q Consensus 388 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~ 432 (880)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888887776767666555555444
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.19 E-value=0.013 Score=55.65 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT---EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~ 232 (880)
..|..++..+. .++...+...++.+.... +.+ ......+...+...|++++|...|++++...+. ......+.-
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 45566666664 788888888899888764 344 344455668888999999999999999875422 111234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
.|...+...|++++|+..++..... ......+......|.+.|+.++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888999999999999999775432 334556777888999999999999999864
No 147
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.17 E-value=0.53 Score=51.40 Aligned_cols=415 Identities=10% Similarity=0.073 Sum_probs=227.3
Q ss_pred HHhCCCHHHHHHHHHHHHhCcCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 002795 200 LGDKGSWRQAMSVLDWVYGLKDKRDL--KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~--~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
+-+++++.+|..+|.++.+.....+. ...+.-+.++++|... +.+.....+....+..|-.|-...+-.+ .+-+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKAL--VAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHh
Confidence 34678899999999988765432210 0133456777777654 5666666666766653322222222222 24577
Q ss_pred CCHHHHHHHHHHHHhC--Cch-hHhhh-hhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCCH
Q 002795 278 GLLKELVKLIERMRQK--PSK-RIKNM-HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS----GLKPSA 349 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~--g~~-~l~~m-~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd~ 349 (880)
+.+++|.+.+..-... +.. .+.+. +.. .-+|...=+..+.++...|.+.++..++++|... ...-+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHH-----HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 8899999888776654 210 01000 000 1123333456777889999999999999998643 333688
Q ss_pred HHHHHHHHHHHHcC--------C-------hHHHHHHHHHHHHc------CCCccHHHHHHHHHHHHhcC--CHHHHHHH
Q 002795 350 ATYGLAMEVMLQSG--------K-------YDLVHEFFRKMAKS------GEAIGALTYKVLVRAFWEEG--KINEAVAA 406 (880)
Q Consensus 350 ~t~~~ll~a~~~~g--------~-------~~~A~~l~~~m~~~------g~~~d~~~~~~Li~~~~~~g--~~~~A~~~ 406 (880)
.+|+.++-.++++= . ++.+.-...+|... .+-|.......++....-.- +..--+++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 88888665554431 1 11122122222211 12222222222322222111 11122233
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 407 VRNMEQRGVVGTA-SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP----LEITFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 407 ~~~m~~~g~~p~~-~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p----~~~t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
+..-...-+.|+. .+...|+..+.+ +.+++..+.+.+.. ..+.+ -..+|..++..+.+.++...|.+.+..+
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~-~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS-SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333344444542 122233333333 55555555555544 11111 1246788888888888888888777665
Q ss_pred hhCCC--------------------CCHHHHHH--------------------HHH-------HHHhcCC-HHHHHHHHH
Q 002795 482 KDHCE--------------------PNIGTVNA--------------------MLK-------VYSRNDM-FSKAKELFE 513 (880)
Q Consensus 482 ~~~~~--------------------pd~~~~~~--------------------Li~-------~~~~~g~-~~~A~~lf~ 513 (880)
.--.+ -|-..++. |++ -+-+.|. -++|+++++
T Consensus 325 ~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 325 KILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred HhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 43100 01111111 111 1222343 677888888
Q ss_pred HHHHcCCCCccccCCCCCCCCC-CHHHHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 002795 514 ETTRANSSGYTFLSGDGAPLKP-DEYTYSSML----EASATA---HQWEYFEYVYKGMALSGCQLD----QTKHAWLLVE 581 (880)
Q Consensus 514 ~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll----~a~~~~---~~~~~A~~l~~~m~~~g~~pd----~~~~~~ll~~ 581 (880)
.+.. +.| |..+-|.+. .+|... ....+-..+-.-+.+.|+.|- ...-|.|-++
T Consensus 405 ~il~---------------ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 405 LILQ---------------FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HHHH---------------hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 8877 345 444433333 334333 345555555556667788774 3455666666
Q ss_pred --HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHH
Q 002795 582 --ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTE 647 (880)
Q Consensus 582 --~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 647 (880)
+-..|++.++.-.-..+.+ +.|++.+|.-+..+++.+.++++|..++..+ .|+..++.+
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3568999988877666666 6799999997777788888999999999987 456666654
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.14 E-value=0.00047 Score=45.96 Aligned_cols=29 Identities=31% Similarity=0.657 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRG 414 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g 414 (880)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.13 E-value=0.017 Score=54.93 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC--HHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--IAAYH 268 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd--~~t~~ 268 (880)
..|..++..+ ..++...+...++.+.+..+... ....+.-.+...+...|++++|...|+..... ...|+ .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 4555666666 47889999999999887654321 12345556778889999999999999999986 32222 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002795 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (880)
Q Consensus 269 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m 340 (880)
.|...+...|++++|+..+..... .......+.....+|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~-----------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD-----------------EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC-----------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888999999999999977433 3344556667778899999999999999764
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.13 E-value=0.013 Score=64.63 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 002795 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 467 (880)
Q Consensus 388 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~ 467 (880)
.+|+..+...++++.|..+|+++.+.. |+. ...|+..+...++..+|++++++... ..+-+......-...|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 344555555666777777777776665 332 23356666666666777777766665 111233334444455667
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 468 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
.++.+.|..+.+++.+-.+-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77777777777777775566677888888888888888888888777654
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.10 E-value=0.0044 Score=68.67 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFK 338 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~ 338 (880)
+.+.+......++..+....+++.+..++...+..... ...-..|..++++.|.+.|..+.++.++.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~-------------~~~~~~t~ha~vR~~l~~~~~~~~l~~L~ 127 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC-------------SYLLPSTHHALVRQCLELGAEDELLELLK 127 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc-------------ccccCccHHHHHHHHHhcCCHHHHHHHHh
Confidence 34456777778888888888888888888888776411 22223345688899999999999999888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 339 QLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 339 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
.=...|+-||.+|||.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 128 n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 128 NRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888999999999999999999999999999888888877666777777666666655
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.09 E-value=0.0064 Score=53.29 Aligned_cols=78 Identities=12% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHcCCCccHHHHH
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMEVMLQSGK--------YDLVHEFFRKMAKSGEAIGALTYK 388 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~--------~~~A~~l~~~m~~~g~~~d~~~~~ 388 (880)
...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-....+|+.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 6777777777776654321 223444555555555555555555
Q ss_pred HHHHHHH
Q 002795 389 VLVRAFW 395 (880)
Q Consensus 389 ~Li~~~~ 395 (880)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5554443
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.0065 Score=53.27 Aligned_cols=80 Identities=8% Similarity=0.213 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGE-AIGALTYKVLVRAFWEEG--------KINEAVAAVRNMEQRGVVGTASVY 422 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~~d~~~~~~Li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~ 422 (880)
-...|..|...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34466677777999999999999999998 888999999988887653 234567788888888888888888
Q ss_pred HHHHHHHHh
Q 002795 423 YELACCLCN 431 (880)
Q Consensus 423 ~~Li~~~~~ 431 (880)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888777654
No 154
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.035 Score=55.90 Aligned_cols=168 Identities=17% Similarity=0.031 Sum_probs=122.5
Q ss_pred hhhhHHhHHHHhhh-hhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 002795 113 LRELKEMFEKDLNW-VLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG 191 (880)
Q Consensus 113 l~~l~e~~~~~l~~-~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~ 191 (880)
+..|...++++++. -....++..+..|.+... ...+.++..+...+.+.-.++++...++..-+.++.
T Consensus 145 l~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-----------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 145 LHKLKTVVSKILANLEQGLAEESSIRLWRKRLG-----------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-----------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 34566666666653 344455667777755222 466788899988999999999999999977677888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK--RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
....|.+.-.+.|+.+.|...|+.+.+.... +...+..+.-.....|.-..++.+|...|.++... -+.|+..-|.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~Nn 291 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--DPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc--CCCchhhhch
Confidence 8999999999999999999999977543221 11222233333344566678999999999999874 3456666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
-.-+..-.|+...|.+.++.|...
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 665666789999999999999984
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.92 E-value=0.028 Score=50.84 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSV 270 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~p-d~~t~~~l 270 (880)
++..+...+.+.|++++|...|+.++...+.. .....++..+..++.+.|+++.|...|+.+.....-.| ...++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34445555556666666666666665433211 11133445566666666666666666666654311111 13445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 002795 271 AVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
..++.+.|+.++|...+.++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55566666666666666666554
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.90 E-value=0.051 Score=58.08 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=43.4
Q ss_pred HhcC-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----ccHH-HHHHH
Q 002795 324 CVPS-HQWKGVFWVFKQLRK----SGLKPS--AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA-----IGAL-TYKVL 390 (880)
Q Consensus 324 ~~~~-g~~~~A~~l~~~m~~----~g~~pd--~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-----~d~~-~~~~L 390 (880)
|-.. |+++.|++.|.+... .| .+. ..++..+...+.+.|++++|..+|+++...-.. .++. .|-..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 4444 566666666666542 12 111 223444556666777777777777766654221 1121 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQR 413 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~ 413 (880)
+-++...|+...|.+.|++....
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 33445556666777776666544
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.90 E-value=0.016 Score=61.86 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
+|..+++.+-+.+..+.|+.+|..+.+... ...++++..+++. |...++.+.|.++|+...+. ++.+...|..-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 444555555555555555555555542211 1122222222222 11123444455555555543 333444444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 002795 272 VTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~ 292 (880)
..+...|+.+.|..+|++...
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHhCcHHHHHHHHHHHHH
Confidence 555555555555555555544
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.89 E-value=0.014 Score=49.43 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=7.6
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 002795 237 ILGKAGRPHEALRIFNLML 255 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~ 255 (880)
.+...|++++|..+|+...
T Consensus 9 ~~~~~~~~~~A~~~~~~~~ 27 (100)
T cd00189 9 LYYKLGDYDEALEYYEKAL 27 (100)
T ss_pred HHHHHhcHHHHHHHHHHHH
Confidence 3333344444444444433
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.89 E-value=0.028 Score=50.91 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 002795 354 LAMEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG--TASVYYELACCL 429 (880)
Q Consensus 354 ~ll~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~Li~~~ 429 (880)
.+...+.+.|++++|...|..+..... +.....+..+..++.+.|+++.|...|+.+....... ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444445555555555555544321 0012233334444555555555555555444432211 122233344444
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 002795 430 CNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 430 ~~~g~~~~A~~l~~~m~~ 447 (880)
.+.|+.++|...++++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444555555555444443
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.89 E-value=0.015 Score=61.90 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 229 ~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
.+|..++...-+.+..+.|+.+|.+..+......+++...+++.. ...++.+.|.++|+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH---------------
Confidence 355566666666666666666666665432223333333333322 2234445566666666554
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS---AATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
...+...|...+..+...++.+.|..+|+..... +.++ ...|...+..=.+.|+++.+..+.+++.+.
T Consensus 66 -f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 66 -FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666544 2221 135555555556666666666666665554
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.87 E-value=0.017 Score=48.88 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
+..+...+...|++++|..+++.+++..+ .+..++..+...+...|++++|.+.|+..... .+.+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP----DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHH
Confidence 33445555566666677766666655432 23355666666666667777777777666553 2333445666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 002795 273 TLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~ 292 (880)
.+...|+++.|...+.....
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHc
Confidence 66666777777766666554
No 162
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.79 E-value=0.016 Score=57.20 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 002795 348 SAATYGLAMEVMLQ-----SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE----------------GKINEAVAA 406 (880)
Q Consensus 348 d~~t~~~ll~a~~~-----~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~----------------g~~~~A~~~ 406 (880)
|..+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 233444444444455555555555555555444321 224567888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002795 407 VRNMEQRGVVGTASVYYELACCLCNNGR 434 (880)
Q Consensus 407 ~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 434 (880)
+++|...|+.||..|+..++..+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888887766554
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.75 E-value=0.022 Score=56.25 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC--------
Q 002795 262 PDIAAYHSVAVTLGQV-----GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH-------- 328 (880)
Q Consensus 262 pd~~t~~~ll~~~~~~-----g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g-------- 328 (880)
.|-.+|..++..|.+. |.++-....+..|.+.| +..|..+|+.||+.+=+..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg---------------v~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG---------------VEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC---------------CcccHHHHHHHHHhCCCCCcccccHHH
Confidence 3566666666666533 56666666777777776 7777777777777655421
Q ss_pred --------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002795 329 --------QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS 362 (880)
Q Consensus 329 --------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 362 (880)
+-+-|++++++|...|+.||..|+..++..+.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 2233444444444444444444444444444433
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.70 E-value=0.032 Score=61.71 Aligned_cols=104 Identities=8% Similarity=-0.106 Sum_probs=86.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
.-...+...|++++|+.+|+...+.. +-+...|..+..+|...|++++|...++.++...+ .+..+|..+..+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P----~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP----SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHH
Confidence 34566778899999999999999877 56788899999999999999999999999988765 56788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
..|++++|+..|+...+. .|+......++
T Consensus 82 ~lg~~~eA~~~~~~al~l---~P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASL---APGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 999999999999999873 45544444443
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.63 E-value=0.17 Score=54.09 Aligned_cols=213 Identities=14% Similarity=0.118 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQ----SGLMF-TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~----~g~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
.+.|......+...+++++|...|..... .+-+. ....|......|.+ +++++|...++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~--------------- 98 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYE--------------- 98 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHH---------------
Confidence 34566777777778888888877766543 22111 11223333333322 25555554444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV-GLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~-g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
..+..|...|++..|-+++..+-+ .|... |++++|.+.|.+....- ..- .
T Consensus 99 ---~A~~~y~~~G~~~~aA~~~~~lA~----------------~ye~~~~d~e~Ai~~Y~~A~~~y--------~~e--~ 149 (282)
T PF14938_consen 99 ---KAIEIYREAGRFSQAAKCLKELAE----------------IYEEQLGDYEKAIEYYQKAAELY--------EQE--G 149 (282)
T ss_dssp ---HHHHHHHHCT-HHHHHHHHHHHHH----------------HHCCTT--HHHHHHHHHHHHHHH--------HHT--T
T ss_pred ---HHHHHHHhcCcHHHHHHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHHHHH--------HHC--C
Confidence 445677788888887777776654 36666 88999998888876531 000 0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcC--C
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-----PSAA-TYGLAMEVMLQSGKYDLVHEFFRKMAKSG--E 380 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~g--~ 380 (880)
....-..++..+...+.+.|++++|..+|++....-+. .+.. .|-..+-++...||+..|...++...... +
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 00111234566777899999999999999998765332 2222 23334456677899999999999987653 2
Q ss_pred --CccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 002795 381 --AIGALTYKVLVRAFWEE--GKINEAVAAVRNMEQ 412 (880)
Q Consensus 381 --~~d~~~~~~Li~~~~~~--g~~~~A~~~~~~m~~ 412 (880)
.........||.+|-.. ..+..|+.-|+.+.+
T Consensus 230 ~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 230 ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 22345666677776542 346667776665543
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.57 E-value=0.045 Score=60.53 Aligned_cols=91 Identities=14% Similarity=-0.009 Sum_probs=79.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 002795 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 197 l~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
...+...|+++.|+..|+.+++..+ .+...|..+..+|.+.|++++|+..++..... -+.+...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHH
Confidence 4556678999999999999998765 56789999999999999999999999999874 33467788999999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 002795 277 VGLLKELVKLIERMRQK 293 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~ 293 (880)
.|++++|...|+...+.
T Consensus 83 lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 83 LEEYQTAKAALEKGASL 99 (356)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 99999999999999884
No 167
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=1.1 Score=52.13 Aligned_cols=324 Identities=14% Similarity=0.168 Sum_probs=182.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS---WRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 159 ~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
..+++.+...+.|..|.++-..|...-..- ...|.....-+.+..+ -+.+..+-+++ .. . .....+|..+.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~--~--~~~~iSy~~iA 514 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SA--K--LTPGISYAAIA 514 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh-cc--c--CCCceeHHHHH
Confidence 466778888888888888877765322112 5666666666665532 22233332222 11 1 13345677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCNLYP---DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g~~p---d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
.-.-.+|+++-|..+++.=.....-.| +..-+...+.-+...|+.+-...++-.|...-..+...|. +-+ .+-
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~--l~~--~p~ 590 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT--LRN--QPL 590 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH--HHh--chh
Confidence 777788888888888776433211111 2233556666677778877777777766654211100000 000 111
Q ss_pred CHHHHHHHHH--------HHhcCCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHHcCChHH-H---------
Q 002795 313 DLVVYNAVLN--------ACVPSHQWKGVFWVFK--QLR----KSGLKPSAATYGLAMEVMLQSGKYDL-V--------- 368 (880)
Q Consensus 313 d~~ty~~ll~--------~~~~~g~~~~A~~l~~--~m~----~~g~~pd~~t~~~ll~a~~~~g~~~~-A--------- 368 (880)
....|--+++ .+-+.++-..+...|. ... ..|..|+. .....+|++...... +
T Consensus 591 a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred hhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 2222322222 1111222222222111 100 12333333 334455555444221 1
Q ss_pred HHHHHHHHH-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 369 HEFFRKMAK-SGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 369 ~~l~~~m~~-~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.++.+.+.. .|....--+.+--+.-+...|+..+|.++-.+.+ .||-..|-.=+.+++..++|++-.++-+.++.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks 743 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS 743 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC
Confidence 112222221 1222333455556666778899889888776654 57777788888999999999987666544432
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~ 514 (880)
+..|...+.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--+
T Consensus 744 -------PIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 -------PIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -------CCCchhHHHHHHhcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 45788889999999999999999887654 11 578899999999999887544
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.40 E-value=0.2 Score=58.00 Aligned_cols=139 Identities=11% Similarity=-0.031 Sum_probs=86.5
Q ss_pred CCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHH
Q 002795 184 SGLMFTEGQMLKLLKGLGDK-----GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG--------RPHEALRI 250 (880)
Q Consensus 184 ~g~~~~~~~~~~ll~~~~~~-----g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g--------~~~~A~~l 250 (880)
.+.+.+...|...+++.... +....|..+|+++++..| ....+|..+..+|.... +...+.+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP----~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP----DFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 44467888888888876543 237789999999988654 34455555544443221 12233333
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCH
Q 002795 251 FNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW 330 (880)
Q Consensus 251 f~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~ 330 (880)
............+...|.++.-.+...|++++|...+++... ..|+...|..+...|...|+.
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-----------------L~ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-----------------LEMSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHHcCCH
Confidence 333322111233456666665555566777777777777776 445677777777777777777
Q ss_pred HHHHHHHHHHHHC
Q 002795 331 KGVFWVFKQLRKS 343 (880)
Q Consensus 331 ~~A~~l~~~m~~~ 343 (880)
++|.+.|++....
T Consensus 470 ~eA~~~~~~A~~L 482 (517)
T PRK10153 470 RLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777654
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.33 E-value=0.23 Score=47.68 Aligned_cols=137 Identities=14% Similarity=0.062 Sum_probs=108.2
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 151 ~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
.-|.+..-..|...+.+.|++.+|...|++...--+..|......+.++....+++..|...++.+.+..+..-.||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~- 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH- 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch-
Confidence 3455566678889999999999999999998865456788999999999999999999999999998888776666643
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~ 292 (880)
-.+...|...|++..|..-|+..... .|+......-...+.+.|+.+++..-+..+.+
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 46677888899999999999999874 57765544445556788888777665555443
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.28 E-value=0.16 Score=48.02 Aligned_cols=99 Identities=9% Similarity=0.068 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
+....+...+...|++++|..+|+.+.... +-+..-|..|.-.+-..|++.+|...|..+....+ .|+..+-.+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~----ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI----DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHHH
Confidence 344455666778888888888888888776 45666677777778888888888888888877654 4666777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCN 259 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g 259 (880)
.++...|+.+.|++.|+.....++
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888888888777543
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.27 E-value=2.2 Score=46.12 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 570 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~p 570 (880)
+.+..|.-+...|+...|.++-.+.. .||..-|...|.+++..++|++-.++... .-
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----------------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kK 235 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----------------VPDKRFWWLKIKALAENKDWDELEKFAKS------KK 235 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----------------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CC
Confidence 45555666777888888888766652 38888888999999999999877665332 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 002795 571 DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 650 (880)
Q Consensus 571 d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 650 (880)
.+.-|..++.+|.+.|...+|..+..++ + +..-+..|.+.|.+.+|.+.--+.. |...+..+..
T Consensus 236 sPIGyepFv~~~~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~ 299 (319)
T PF04840_consen 236 SPIGYEPFVEACLKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILK 299 (319)
T ss_pred CCCChHHHHHHHHHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHH
Confidence 3466778888888889988888888772 2 2456777888888888887766553 4445555555
Q ss_pred Hhhhc
Q 002795 651 SNEDR 655 (880)
Q Consensus 651 a~~~~ 655 (880)
.|...
T Consensus 300 ~~~~~ 304 (319)
T PF04840_consen 300 RCPGN 304 (319)
T ss_pred HCCCC
Confidence 55443
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.26 E-value=2.2 Score=46.10 Aligned_cols=106 Identities=12% Similarity=0.224 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 465 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~ 465 (880)
+.+..|.-+...|+...|.++-.+. -+|+...|...+.+|+..++|++-..+... +-.++.|-.++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 4455566677788887777775554 257888888889999999998876655321 12346788888889
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 511 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l 511 (880)
.+.|+..+|..+...+. +..-+..|.++|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHH
Confidence 99999888888877732 24567778888888888664
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.22 E-value=0.16 Score=49.78 Aligned_cols=87 Identities=11% Similarity=-0.060 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 153 ~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
.....+..+...+...|++++|...|+...+....+. ...+..+...+.+.|++++|...++.++...+ .+...
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~ 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----KQPSA 108 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHH
Confidence 3445667777888889999999999999887543222 46788888999999999999999999987644 35667
Q ss_pred HHHHHHHHHHcCC
Q 002795 231 YTKLLAILGKAGR 243 (880)
Q Consensus 231 ~~~Ll~~~~~~g~ 243 (880)
+..+...|...|+
T Consensus 109 ~~~lg~~~~~~g~ 121 (172)
T PRK02603 109 LNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHcCC
Confidence 7777888887776
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.21 E-value=0.055 Score=55.97 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=81.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 002795 498 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKH 575 (880)
Q Consensus 498 ~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~ 575 (880)
-+.+.+++.+|+..|.+.+. +.| |.+-|..-..+|.+.|.++.|.+-.+..+. +.|. ..+|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---------------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay 152 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---------------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAY 152 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---------------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHH
Confidence 35678999999999999998 456 777788888899999999999888777664 5555 6688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 576 AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQA 617 (880)
Q Consensus 576 ~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 617 (880)
..|-.+|...|++++|.+.|.+.++ +.|+..+|..-+...
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 8899999999999999999998877 558888887555444
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.20 E-value=0.3 Score=46.20 Aligned_cols=98 Identities=10% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 002795 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 433 (880)
Q Consensus 354 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g 433 (880)
.+..-+...|++++|.++|+.+.... +-+..-|-.|..++-..|++.+|+..|......++. +...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34445568899999999998888875 345677777888888889999999999888877753 4555556788888899
Q ss_pred CHHHHHHHHHHHHhcCCCCC
Q 002795 434 RWQDAMLVVEKIKSLRHSKP 453 (880)
Q Consensus 434 ~~~~A~~l~~~m~~~~~~~p 453 (880)
+.+.|...|+......+..|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 99999888888776444444
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.20 E-value=0.012 Score=50.03 Aligned_cols=48 Identities=19% Similarity=0.447 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002795 397 EGKINEAVAAVRNMEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEK 444 (880)
Q Consensus 397 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~l~~~ 444 (880)
.|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555555555554432 1233333355555555555555555554
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.13 E-value=0.11 Score=50.66 Aligned_cols=96 Identities=11% Similarity=-0.059 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 228 ~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
...|..+...+...|++++|+..|+.......-++ ...+|..+...+...|++++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------------- 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------------- 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 34566666666777777777777777765311111 1346677777777777888777777777654
Q ss_pred CCCCCCCHHHHHHHHHHHh-------cCCCHHHHHHHHHH
Q 002795 307 DPVLEPDLVVYNAVLNACV-------PSHQWKGVFWVFKQ 339 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~-------~~g~~~~A~~l~~~ 339 (880)
.+....+++.+...+. ..|+++.|+..+.+
T Consensus 102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 2333444555555554 55666655444443
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.11 E-value=0.21 Score=48.88 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHH
Q 002795 383 GALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFT 459 (880)
Q Consensus 383 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~ 459 (880)
....+..+...|...|++++|...|++....+..+. ...+..+..++.+.|++++|...+.+... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 355677777788888888888888888876544332 34567777778888888888888887776 2333 33445
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 460 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 460 ~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.+...+...|+...+..-+.... ..+++|.+++++....
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~--------------------~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE--------------------ALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH--------------------HHHHHHHHHHHHHHhh
Confidence 55555666666555443333221 1257777888877763
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.09 E-value=0.013 Score=49.68 Aligned_cols=81 Identities=21% Similarity=0.441 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 362 SGKYDLVHEFFRKMAKSGEA-IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440 (880)
Q Consensus 362 ~g~~~~A~~l~~~m~~~g~~-~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 440 (880)
.|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+.. +......+..+|.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666655321 1333444456666666666666666655 222211 12222334555666666666666
Q ss_pred HHHH
Q 002795 441 VVEK 444 (880)
Q Consensus 441 l~~~ 444 (880)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6553
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.06 E-value=0.27 Score=44.75 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
.+...+-..|+.++|+.+|+.....|.... ...+..+...+...|++++|..+++......+... .+......+.-+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-LNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHH
Confidence 445666678999999999999999886544 35677788888999999999999998876543311 122333334446
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
+...|+.++|+..+-.... ++...|.--|..|+.
T Consensus 85 L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 7888999999998877665 245566666666543
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=4.1 Score=46.90 Aligned_cols=66 Identities=11% Similarity=-0.089 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA--------AYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~--------t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
|.+..|..|.......-.++-|...|-+...-.|++---. .-.+=+.+ --|.+++|.++|-+|-++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh
Confidence 6677888888777776677777777766543222211000 00111122 247788888887777554
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.98 E-value=0.32 Score=56.39 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=80.3
Q ss_pred CccHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHh
Q 002795 381 AIGALTYKVLVRAFWEE--G---KINEAVAAVRNMEQRGVVGTASVYYELACCLCNN--------GRWQDAMLVVEKIKS 447 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~--------g~~~~A~~l~~~m~~ 447 (880)
+.|...|...+.+.... + ....|..+|++..+.++. ....|..+..++... .++..+.....+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44555555555553322 1 244566666666555432 223333332222211 112233333333332
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
......+...+..+.-.....|++++|...+++..... |+...|..+...|...|+.++|.+.|++.....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11233344566666555666799999999999988733 578889999999999999999999999988843
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.2 Score=52.20 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=85.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 405 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 405 ~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
.-++.-...++. |...|-.|...|...|+...|...|.+..+..+.+|+... |...+..-.......++..+|+++..
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 333444444433 6777999999999999999999999998886665555432 33333333334456788999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 484 HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 484 ~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
..+-|+.+..-|...+...|++.+|...|+.|.+..
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777888888888899999999999999999999964
No 184
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.96 E-value=0.18 Score=47.75 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=67.1
Q ss_pred HhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 002795 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280 (880)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~ 280 (880)
...|+...+...++.++..-.....++... ..-......-++.+.- .+...++..+...|++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~~--------~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELYL--------DALERLAEALLEAGDY 78 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHHH--------HHHHHHHHHHHHTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccCH
Confidence 455677777777777665432222222111 1122223333333322 2455566677788888
Q ss_pred HHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 002795 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR-----KSGLKPSAAT 351 (880)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t 351 (880)
++|..+...+... .+-|...|..+|.+|...|+...|+++|+.+. +.|+.|+..+
T Consensus 79 ~~a~~~~~~~l~~----------------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALAL----------------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHH----------------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 8888888888775 56677888888888888888888888888774 3588887765
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.94 E-value=0.03 Score=45.15 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=45.3
Q ss_pred HhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
...|++++|.++|+.++...| .+..++..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP----DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHHH
Confidence 356778888888888876654 46677778888888888888888888888764 46655554443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.93 E-value=0.026 Score=45.50 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=43.5
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
.+.|++++|..+|+.+....+.+...+..+..+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456888888888888887666788888888888888888888888888888854
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=4.6 Score=46.53 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHH
Q 002795 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL----------GKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 187 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~----------~~~g~~~~A~~lf~~m~~ 256 (880)
.|.+..|..+.......-.++.|...|-+.-.. +.+.....|-..+ +-.|++++|.++|-+|-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY------~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY------AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc------cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 578888888887777767777777776544211 1221111111111 224899999999999877
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 002795 257 DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWV 336 (880)
Q Consensus 257 ~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l 336 (880)
+ | ..|..+.+.|++-...++++.--... ....-...|+.+...++....|++|.+.
T Consensus 763 r-----D-----LAielr~klgDwfrV~qL~r~g~~d~--------------dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 763 R-----D-----LAIELRKKLGDWFRVYQLIRNGGSDD--------------DDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred h-----h-----hhHHHHHhhhhHHHHHHHHHccCCCc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 3 33556677788876666554321110 0222345788888888888889999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002795 337 FKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 337 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
|..-. +. ...+.++.+..++++-+.+...+ +-|....-.|..++.+.|.-++|++.|-+ .+.
T Consensus 819 Y~~~~------~~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~- 880 (1189)
T KOG2041|consen 819 YSYCG------DT---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL- 880 (1189)
T ss_pred HHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-
Confidence 87643 21 23566677766666665555444 33556677788999999999999887743 222
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 417 GTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 417 p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
|- ..+.+|....+|.+|.++-++.
T Consensus 881 pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 881 PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 21 2355677788888888876654
No 188
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.84 E-value=3.2 Score=44.20 Aligned_cols=224 Identities=11% Similarity=0.123 Sum_probs=113.4
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhCC-CHHHHHHHHHHHHhc-------CCCCCCH---
Q 002795 395 WEEGKINEAVAAVRNMEQRG--VVGTA------SVYYELACCLCNNG-RWQDAMLVVEKIKSL-------RHSKPLE--- 455 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g--~~p~~------~t~~~Li~~~~~~g-~~~~A~~l~~~m~~~-------~~~~p~~--- 455 (880)
.+.|+++.|..++.+..... ..|+. ..|+.-. .....+ ++++|..++++..+. ....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 34566666666665554332 12211 1233222 233444 666666666654431 1223333
Q ss_pred --HHHHHHHHHHHhCCCHH---HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCC
Q 002795 456 --ITFTGLIISSMDGGHID---DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 530 (880)
Q Consensus 456 --~t~~~ll~a~~~~g~~~---~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~ 530 (880)
.++..++.+|...+..+ +|..+.+.+....+-.+.++-.-+..+.+.++.+++.+.+.+|...-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~----------- 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV----------- 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-----------
Confidence 34566677777766654 45555556655333345555556666777888888888888888852
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH---HHcC------CHHHHHHHHHH
Q 002795 531 APLKPDEYTYSSMLEASATA--HQWEYFEYVYKGMALSGCQLDQT--KHAWLLVEA---SRAG------KCHLLEHAFDS 597 (880)
Q Consensus 531 ~~~~Pd~~t~~~ll~a~~~~--~~~~~A~~l~~~m~~~g~~pd~~--~~~~ll~~~---~~~G------~~~~A~~~~~~ 597 (880)
.-....+..++..+-.. .....+...+..++...+.|... .-..++... ...+ +++....+++.
T Consensus 152 ---~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 152 ---DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred ---ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 22344555555544222 33345666666666555665543 212222221 1111 14445455553
Q ss_pred HHHC-CCCCCHHH-------HHHHHHHHHHhCCHHHHHHHHHHh
Q 002795 598 LLEA-GEIPHPLF-------FTEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 598 m~~~-g~~p~~~~-------~~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
+... +...+..+ .+.....+++.+++++|...|+-.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3321 11122221 112355566777888888877743
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.77 E-value=1.7 Score=42.03 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHH
Q 002795 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV---VGTASV 421 (880)
Q Consensus 345 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t 421 (880)
..|++..--.|..+....|++.+|...|.+...--+..|....-.+.++....+++..|...++.+.+.+. .||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~- 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH- 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch-
Confidence 46777777778888899999999999999887755667888888888888889999999999988877642 44443
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHH
Q 002795 422 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVN 493 (880)
Q Consensus 422 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~ 493 (880)
-.+...|...|++.+|...|+.... ..|+...-.-.-..+.+.|+.+++..-+..+.+....+..+|.
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 3467778889999999999998877 4555544333334456777776666555544443223444444
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.74 E-value=0.2 Score=48.77 Aligned_cols=81 Identities=5% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP--SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li 391 (880)
...|..+...+...|++++|+..|++.......| ...++..+..++...|++++|...++...... +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666777788888888877776543222 12466667777777777777777777777653 23344555555
Q ss_pred HHHH
Q 002795 392 RAFW 395 (880)
Q Consensus 392 ~~~~ 395 (880)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.71 E-value=3.1 Score=43.18 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=36.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhCcCC
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQM---LKLLKGLGDKGSWRQAMSVLDWVYGLKDK 222 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~l~~~~~~~~~~ 222 (880)
.....+...|++++|...|+.+...- +-+.... ..+..++-+.++++.|...++..++..|.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34444455677777777777766543 2222222 34455666667777777777777666554
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.69 E-value=2 Score=43.32 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=91.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 002795 356 MEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 433 (880)
Q Consensus 356 l~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g 433 (880)
...+...|++.+|...|+.+..... +.-....-.++.+|.+.|+++.|...|+...+.-+.....-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345567777777777777776521 12233445566777777777777777777766544322222333333322111
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002795 434 RWQDAMLVVEKIKSLRHSKPL-----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKA 508 (880)
Q Consensus 434 ~~~~A~~l~~~m~~~~~~~p~-----~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A 508 (880)
.....+ . ....+. ...|..++.-|=.+....+|...+..+.+. =...--.+...|.+.|.+..|
T Consensus 92 ~~~~~~-------~-~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 92 QIPGIL-------R-SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHCTT-HHHH
T ss_pred hCccch-------h-cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccHHHH
Confidence 111110 0 000000 123455555555666666666666655541 111222356778888899999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 002795 509 KELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYF 556 (880)
Q Consensus 509 ~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~----~t~~~ll~a~~~~~~~~~A 556 (880)
..-|+.+++.- |+. .....++.+|.+.|..+.+
T Consensus 161 ~~r~~~v~~~y---------------p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIENY---------------PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHS---------------TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHC---------------CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 99888888864 543 3556777777777776644
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.68 E-value=0.22 Score=53.33 Aligned_cols=288 Identities=14% Similarity=0.020 Sum_probs=142.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC--cCCCCCCCHHHHHHHHH
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTE----GQMLKLLKGLGDKGSWRQAMSVLDWVYGL--KDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~d~~~~~~Ll~ 236 (880)
..||+.|+.+..+.+|+...+.|. -|. ..|..|..+|.-.+++++|++.+..=+.. ..........+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 589999999999999999999884 444 45667777888888999999887532110 00000011122223333
Q ss_pred HHHHcCCHHHHHHHHHHHHH---cCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 237 ILGKAGRPHEALRIFNLMLE---DCNL-YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~---~~g~-~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
.+--.|.+++|+-.-.+-.. ..|- .....++-.+...|...|+. +..-.+.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~-------------------------~g~~~pe 158 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC-------------------------TGLEAPE 158 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc-------------------------cCCCChh
Confidence 34444566665543222110 0000 00111222233333332221 0000010
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCc
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQL----RKSGLK-PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS----G-EAI 382 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m----~~~g~~-pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~----g-~~~ 382 (880)
+.-.++.=+. ..++.|.++|.+= .+.|-. .-...|..|-+.|.-.|+++.|...++.-+.. | -..
T Consensus 159 e~g~f~~ev~-----~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 159 EKGAFNAEVT-----SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred hcccccHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1111111111 1123333333321 111110 11234666666677778888888777654322 2 112
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cCCCCC
Q 002795 383 GALTYKVLVRAFWEEGKINEAVAAVRNMEQR----GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKS----LRHSKP 453 (880)
Q Consensus 383 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~----~~~~~p 453 (880)
....+..|.++|.-.|+++.|.+.|+.-... |- .....+..+|..+|.-...++.|+.++.+-.. .....-
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777888888888888888888764422 11 11223344566666666666666666554322 111112
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 454 LEITFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 454 ~~~t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
...+|-+|-.+|...|..++|..+.+.-
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2344555666666666666665555443
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.61 E-value=3.4 Score=42.92 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=101.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY---KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~---~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
....+...|+++.|...|+.+...-.. +.... -.+..+|.+.++++.|...|++..+..+.....-|...+.+++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 334446678888888888888775322 22222 34566777888888888888888776544333334444444331
Q ss_pred --CC---------------C---HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHH
Q 002795 432 --NG---------------R---WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 491 (880)
Q Consensus 432 --~g---------------~---~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~ 491 (880)
.+ + ...|+..|+. ++.-|=.+.-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDR---LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHH---HHHH
Confidence 11 1 1223333333 333333344455555544444431 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 492 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 564 (880)
Q Consensus 492 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~ 564 (880)
--.+..-|.+.|.+.-|..-|+.+++.-. +..........++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----------DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCC-----------CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 12455667888888888888888887531 112244566677788888888888777665543
No 195
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.51 E-value=0.2 Score=46.07 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcC------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKD------------KRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~------------~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
|..++..++.++++.|+++....+++.+..... .+..|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345666777777777777777777665543321 23457899999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 002795 257 DCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 257 ~~g~~pd~~t~~~ll~~~~~~ 277 (880)
.++++-+..+|..|+.-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 999988999999998755443
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.14 Score=53.01 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g 242 (880)
+.+.+.++|.+|+..|...++.. +-|..-|..-..+|++.|.++.|.+=.+..+...+ ....+|..|-.+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp----~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP----HYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccC
Confidence 45667889999999999999886 66788888899999999999999999998887654 45678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 002795 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273 (880)
Q Consensus 243 ~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~ 273 (880)
++++|++.|++..+ +.|+..+|-.=+..
T Consensus 164 k~~~A~~aykKaLe---ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE---LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc---cCCCcHHHHHHHHH
Confidence 99999999999886 68888877555443
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.40 E-value=0.7 Score=42.06 Aligned_cols=57 Identities=26% Similarity=0.357 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTA--SVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
..++-..|+.++|+.+|++....|+.... ..+-.+..+|...|++++|+.+|++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445556666666666666665554331 2333445555566666666666655554
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.35 E-value=0.08 Score=42.21 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=38.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 196 ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
+...+...|++++|...|+.+++..+ .+..++..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP----DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556667777777777777766543 35667777777777777777777777777653
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.33 E-value=0.082 Score=42.13 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 462 IISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 462 l~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
...+...|++++|...|+.+.+..+-+...|..+..++.+.|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677888888888888888866667888888888888888888888888888774
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.05 E-value=0.13 Score=41.48 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEG-KINEAVAAVRNM 410 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g-~~~~A~~~~~~m 410 (880)
|..+...+...|++++|...|.+.++.. +.+...|..+..+|...| ++++|++.|+..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3333344444444444444444444432 223334444444444444 344444444433
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=9.5 Score=44.67 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=93.5
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHhCcCCCCC
Q 002795 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQML-----KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDL 225 (880)
Q Consensus 151 ~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~-----~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 225 (880)
..++++.|-.+.+.+. .+. .-.+.+.|++.+..-|. .++.-+...+.+..|.++-.++-. +..
T Consensus 401 ~~~~~d~~~~v~~~lr-------Vln-~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~-- 468 (829)
T KOG2280|consen 401 RTPNPDEYMRVCRELR-------VLN-ALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL--PES-- 468 (829)
T ss_pred ccCChHHHHHHHHHHH-------HHh-hhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC--ccc--
Confidence 4455566555554441 111 12334578888887775 467777888999999999988722 111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhh
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNL-YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRK 304 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~-~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~ 304 (880)
.+-.+|.....-+.+..+.. -..+++.+.++.+. --..++|..+......+|+.+-|..+++.=...+.. +.
T Consensus 469 ~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q-V~----- 541 (829)
T KOG2280|consen 469 QGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ-VP----- 541 (829)
T ss_pred cccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch-hH-----
Confidence 12456667766666663221 12223333332111 135677888888888999999998877643332200 00
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002795 305 NWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 305 ~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~ 342 (880)
.-.+..-+...+.-+.+.|+.+-...++-.|..
T Consensus 542 -----lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 542 -----LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred -----HHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 001122244455555666666666666655543
No 202
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=6.8 Score=46.40 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV----YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~----~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t 266 (880)
.....-+..+.+...+..|..+-..- + .|... ......-+.+.|++++|...|-+.... +.|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s--- 401 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---H-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS--- 401 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---C-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH---
Confidence 34455666666666677776665422 1 22222 222333445668888888777666542 3332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 002795 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (880)
Q Consensus 267 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (880)
.+|.-|....++.+-...++.+.+.| -.+...-+.||.+|.+.++.++-.++.+.-- .|..
T Consensus 402 --~Vi~kfLdaq~IknLt~YLe~L~~~g----------------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~ 462 (933)
T KOG2114|consen 402 --EVIKKFLDAQRIKNLTSYLEALHKKG----------------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW 462 (933)
T ss_pred --HHHHHhcCHHHHHHHHHHHHHHHHcc----------------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce
Confidence 34555666667777777777777765 2344455678888888888888766665543 2221
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 347 -PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 347 -pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
-|. -..+..|.+.+-+++|..+-..... +......++ -..|++++|++++..|.
T Consensus 463 ~fd~---e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 463 FFDV---ETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred eeeH---HHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 133 4467777777777777766544333 233333333 35678888888887653
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.95 E-value=7.3 Score=42.83 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=83.4
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
..+.+.-+|-.|++-+...+..++..+++++|..- .+.-..+|..-+.+=....+++....+|.+.+... .++.
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-----l~ld 110 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-----LNLD 110 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-----ccHh
Confidence 45667788888999888888888888888888743 24455666666666666678888888888876532 4566
Q ss_pred HHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCC-HHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhC
Q 002795 230 VYTKLLAILGKAGRP------HEALRIFNLMLEDCNLYPD-IAAYHSVAVTL---------GQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~------~~A~~lf~~m~~~~g~~pd-~~t~~~ll~~~---------~~~g~~~~A~~l~~~m~~~ 293 (880)
.|...+....+.... ....+.|+-...-.++.|- ...|+..+..+ ..+.+++.....|.+|...
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 777777644443211 1112233333222244443 23344433322 1223445666677777765
Q ss_pred C
Q 002795 294 P 294 (880)
Q Consensus 294 g 294 (880)
+
T Consensus 191 P 191 (660)
T COG5107 191 P 191 (660)
T ss_pred c
Confidence 4
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.92 E-value=0.22 Score=53.29 Aligned_cols=296 Identities=11% Similarity=0.028 Sum_probs=150.3
Q ss_pred HHHHHHHHHH--HhcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHH--Hc--C-CCc
Q 002795 314 LVVYNAVLNA--CVPSHQWKGVFWVFKQLRKSGLKPSAA----TYGLAMEVMLQSGKYDLVHEFFRKMA--KS--G-EAI 382 (880)
Q Consensus 314 ~~ty~~ll~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~~A~~l~~~m~--~~--g-~~~ 382 (880)
...|...+.+ +++.|+......+|+...+.|.. |.. .|.-|-++|.-.+++++|.+++..=+ .+ | -.-
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 3344444444 67778888888888777776632 332 34445566666667777776654311 11 1 001
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 002795 383 GALTYKVLVRAFWEEGKINEAVAAVRNM----EQRGV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 457 (880)
Q Consensus 383 d~~~~~~Li~~~~~~g~~~~A~~~~~~m----~~~g~-~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 457 (880)
...+...|.+.+--.|.+++|.-.-.+- .+.|- +.....+..|...|...|+.-... .-.+ .+..+..++
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee-~g~f~~ev~ 168 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEE-KGAFNAEVT 168 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----Chhh-cccccHHHH
Confidence 1223333444444455555554432221 11111 111122222344444333311000 0000 111121111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 002795 458 FTGLIISSMDGGHIDDCISIFQHMKD-----H-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 531 (880)
Q Consensus 458 ~~~ll~a~~~~g~~~~A~~i~~~m~~-----~-~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~ 531 (880)
..++.|.++|.+-.+ + -..-...|..|...|.-.|+++.|+...+.-+...- ..+
T Consensus 169 -----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~--------efG 229 (639)
T KOG1130|consen 169 -----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ--------EFG 229 (639)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH--------Hhh
Confidence 012333444433211 0 011123455566666667889998877654333100 000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----C
Q 002795 532 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GC-QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE-----A 601 (880)
Q Consensus 532 ~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~----g~-~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~-----~ 601 (880)
.-......+..+..++.-.|+++.|.+.|+.-... |- ........+|-+.|.-...++.|+.++.+-.. .
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123456777888888889999998888765432 21 12233455677777777788888888774332 1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 602 GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 602 g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
+..-....++++..++-..|+.++|+.+.+.-.
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 223345577789888888899999888777654
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.82 E-value=0.55 Score=43.16 Aligned_cols=95 Identities=9% Similarity=0.004 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc--CCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 488 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL--SGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 565 (880)
Q Consensus 488 d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l--~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~ 565 (880)
|..++.++|.++++.|+.+....+++..=.-.......- .....++.|+..+..+++.+|+..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888777765433211000000 122344556666666666666666666666666555543
Q ss_pred C-CCCCCHHHHHHHHHHH
Q 002795 566 S-GCQLDQTKHAWLLVEA 582 (880)
Q Consensus 566 ~-g~~pd~~~~~~ll~~~ 582 (880)
. +++.+..++..|+.-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 3 4444455555555443
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.73 E-value=4.1 Score=41.03 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=25.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKD 221 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~ 221 (880)
..+...|++.+|...|+.+....- +........++.++-+.|++..|...++..++.-|
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 333445555555555555554210 11223334444455555555555555555544433
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=1.4 Score=46.11 Aligned_cols=111 Identities=13% Similarity=-0.057 Sum_probs=88.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002795 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG---RPHEALRIFN 252 (880)
Q Consensus 176 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g---~~~~A~~lf~ 252 (880)
.-++.-.+.+ +-|...|..|...|...|++..|..-|...++..+ ++...+..+..++.... ...++..+|+
T Consensus 143 a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 143 ARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG----DNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3344444444 67899999999999999999999999999988765 56677777777665543 4568999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 253 LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 253 ~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
++... -+-|+.+...|...+...|++.+|...++.|...
T Consensus 218 ~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 99983 4446667777778899999999999999999985
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=3 Score=45.32 Aligned_cols=271 Identities=12% Similarity=0.029 Sum_probs=133.3
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEA 403 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A 403 (880)
+.+..++..|+..+....+.... +..-|..-...+...|+++++.--.+.-++.. +.....+.-.-.++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 44555666677777666665422 33344444444555555555554443333321 01112222333344444444455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHh
Q 002795 404 VAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI-ISSMDGGHIDDCISIFQHMK 482 (880)
Q Consensus 404 ~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll-~a~~~~g~~~~A~~i~~~m~ 482 (880)
.+.|+ +...| ....|+..++.+.......|...++-.+- ..+...|+.+.|.++--.+.
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 54444 00001 11122222222222111123333333332 33456788888887776666
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHH---HHH----------HHH
Q 002795 483 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM---LEA----------SAT 549 (880)
Q Consensus 483 ~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~l---l~a----------~~~ 549 (880)
+-...+....-.=-.++--.++.+.|...|++.+..+ ||...-.++ ... ..+
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld---------------pdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD---------------PDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccC---------------hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 6333333322222223334678889999999988854 665433222 222 234
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HhCCHH
Q 002795 550 AHQWEYFEYVYKGMALS---GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI--VQSNYE 624 (880)
Q Consensus 550 ~~~~~~A~~l~~~m~~~---g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~ 624 (880)
.|++..|.+.|.+.+.. ...|+...|...-....+.|+..+|..--+.....+ | ..++-.+..+-| ..++++
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~-syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--S-SYIKALLRRANCHLALEKWE 338 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--H-HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888877642 223334445544455667788888877766665521 1 122222222222 235677
Q ss_pred HHHHHHHHhh
Q 002795 625 KAVALINAMA 634 (880)
Q Consensus 625 ~A~~l~~~m~ 634 (880)
+|.+-+++..
T Consensus 339 ~AV~d~~~a~ 348 (486)
T KOG0550|consen 339 EAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.33 E-value=0.17 Score=40.76 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 002795 456 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND-MFSKAKELFEETTR 517 (880)
Q Consensus 456 ~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g-~~~~A~~lf~~m~~ 517 (880)
.+|..+-..+...|++++|+..|.+..+..+.+...|..+..+|.+.| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555666666666666666666544555666666666666666 56777777666655
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.33 E-value=3 Score=47.58 Aligned_cols=93 Identities=16% Similarity=0.290 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHH---------HHHHHcCCCccHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCC
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFF---------RKMAKSGEAIGALTYKVLVRAFWEEGKI--NEAVAAVRNMEQRGVV 416 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~---------~~m~~~g~~~d~~~~~~Li~~~~~~g~~--~~A~~~~~~m~~~g~~ 416 (880)
....+.+=+..|...|.+++|.++- +.+... ..+.-.++.-=.+|.+..+. -+.+.-+++|.++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3344444455566677776665532 111111 12334455555677766653 3455567788888988
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 417 GTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 417 p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
|+... +...++-.|++.+|-++|.+-
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 88765 344577788888888888763
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.27 E-value=0.88 Score=47.79 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT---EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVY 231 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~ 231 (880)
...|...+..+.+.+++++|...|+.+.+.. +-+ ...+..+...|...|+++.|...|+.+++..+... ....++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~-~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP-KAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhHHH
Confidence 4556665555566788888888888887654 211 35667777788888888888888888876554321 234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 232 ~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
-.+...+...|+.++|..+|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666677788888888888888774
No 212
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=5.7 Score=40.20 Aligned_cols=214 Identities=15% Similarity=0.160 Sum_probs=119.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
.|..-...|.....++....++++|-..+....+. ...+...|. ..++ ++.|.-+..++.+.. --+.
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AAKa------yEqaamLake~~kls-----Evvd 92 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AAKA------YEQAAMLAKELSKLS-----EVVD 92 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HHHH------HHHHHHHHHHHHHhH-----HHHH
Confidence 46666778888889999999999998887776531 122222221 2222 344444444443211 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLMLED-CNLYPDI--AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m~~~-~g~~pd~--~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
.|+....+|..+|.++-|-..+++.-+- .++.|+. ..|.--+......++...|.++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-------------------- 152 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-------------------- 152 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH--------------------
Confidence 5677778899999988877777664431 0234432 1233333333333333333333
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS----GLKPSA-ATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-- 379 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-- 379 (880)
|..+-+++++...+.+|-..|.+-... .-.|+. ..|...|-.+.-..++..|+.+++.--+.+
T Consensus 153 ----------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 153 ----------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred ----------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 333444566666676665554443211 111222 235556666777778888888888755443
Q ss_pred -CCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 380 -EAIGALTYKVLVRAFWEEGKINEAVAAV 407 (880)
Q Consensus 380 -~~~d~~~~~~Li~~~~~~g~~~~A~~~~ 407 (880)
-+-+..+...|+.+| ..|+.+++..++
T Consensus 223 ~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 223 LKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 233567777788877 457777666554
No 213
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=10 Score=41.35 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=59.4
Q ss_pred HHhCCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-HH
Q 002795 465 SMDGGHIDDCISIFQHMKD----HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YT 539 (880)
Q Consensus 465 ~~~~g~~~~A~~i~~~m~~----~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~-~t 539 (880)
..+.|++..|.+.|.+... +..++...|.....+..+.|+..+|+.--++..+. .|.. ..
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------------D~syika 323 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------------DSSYIKA 323 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------------CHHHHHH
Confidence 3567888888888887765 25667777777778888888888888888777662 2221 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002795 540 YSSMLEASATAHQWEYFEYVYKGMALSGC 568 (880)
Q Consensus 540 ~~~ll~a~~~~~~~~~A~~l~~~m~~~g~ 568 (880)
|..-..++...+.|+.|.+-++...+..-
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22223344445788888888887766533
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.17 E-value=0.63 Score=48.85 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhh
Q 002795 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (880)
Q Consensus 228 ~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~----~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (880)
...|...+..+.+.|++++|+..|+.+.+. .|+. .++-.+...|...|++++|...|..+......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------
Confidence 345666666667778999999999998875 3442 46667778888899999999999988764200
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 002795 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (880)
Q Consensus 304 ~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~ 343 (880)
.+.....+-.+...+...|+.++|..+|+.+.+.
T Consensus 213 ------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 ------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2223344444556677788888888888888764
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.15 E-value=0.25 Score=46.82 Aligned_cols=71 Identities=23% Similarity=0.393 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCCHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE----DCNLYPDIAA 266 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~----~~g~~pd~~t 266 (880)
.+..++..+...|+++.|..+...++...| .|...|..+|.+|...|+..+|.++|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP----~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP----YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST----T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344566666677888888888887776554 5677888888888888888888888777643 2467776655
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.15 E-value=4.7 Score=46.03 Aligned_cols=169 Identities=15% Similarity=0.206 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH-----HHHHHHhcCCHHHHHHH
Q 002795 332 GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV-----LVRAFWEEGKINEAVAA 406 (880)
Q Consensus 332 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~-----Li~~~~~~g~~~~A~~~ 406 (880)
+...-+++|++.|-.|+... +...|+-.|++.+|.++|.+--..+-. ...|+- +..-|...|..++-..+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 44445667777777777654 445566677777777777543221100 111111 11222333333332222
Q ss_pred HHHHHH--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-----H-Hhc--CCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 407 VRNMEQ--RGVVGTASVYYELACCLCNNGRWQDAMLVVEK-----I-KSL--RHSKPLEITFTGLIISSMDGGHIDDCIS 476 (880)
Q Consensus 407 ~~~m~~--~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~-----m-~~~--~~~~p~~~t~~~ll~a~~~~g~~~~A~~ 476 (880)
.++-.+ +++.-.. +....+...|+.+.|..+.-+ | .+- .-...+..+...+..-+.+...+..|-+
T Consensus 693 ~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 693 IRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH
Confidence 222111 1111111 122334445555555443221 0 000 0011233344444455556677888999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 477 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 477 i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
+|..|-+ ...+++.....+++.+|..+-+...+
T Consensus 769 IF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 769 IFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 9998865 34677888889999999999888766
No 217
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.01 E-value=20 Score=44.35 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=21.7
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 002795 381 AIGALTYKVLVRAFWEEG--KINEAVAAVRNMEQ 412 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~g--~~~~A~~~~~~m~~ 412 (880)
.|+ ...-.+|.+|.+.+ .++.|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 45557888888887 67777777777664
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.81 E-value=0.28 Score=40.00 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=36.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 198 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
..|.+.++++.|..+++.++...| .++..|.....++.+.|++.+|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP----DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc----ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455666777777777777666544 35556666666677777777777777776653
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.53 E-value=12 Score=41.04 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=80.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSG---EAIGALTYKVLVRAFWE---EGKINEAVAAVRNMEQRGVVGTASVYYELACC 428 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g---~~~d~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~ 428 (880)
++-+|....+++...++++.|...- +.-...+--...-++-+ .|+.++|.+++..+......++..+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555555555555555555431 11111111122223333 45556666665554444444455555544444
Q ss_pred HH---------hCCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhC-CCHHHHHHHH---HHHh--hC---CCC
Q 002795 429 LC---------NNGRWQDAMLVVEKIKSLRHSKPLEIT---FTGLIISSMDG-GHIDDCISIF---QHMK--DH---CEP 487 (880)
Q Consensus 429 ~~---------~~g~~~~A~~l~~~m~~~~~~~p~~~t---~~~ll~a~~~~-g~~~~A~~i~---~~m~--~~---~~p 487 (880)
|- .....+.|+..|.+--. ..|+..+ +..|+...... ..-.+..++- ..+. ++ -..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 32 11235667777766654 3344332 33333322221 1111222222 1111 12 345
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 488 NIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 488 d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+-.-+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 6677788999999999999999999999884
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.43 E-value=0.44 Score=38.79 Aligned_cols=57 Identities=5% Similarity=0.022 Sum_probs=47.8
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 463 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 463 ~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
..|.+.++++.|..+++.+..-.+.+...|.....+|.+.|++.+|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788888888888888888667788888888888999999999999999988854
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.36 E-value=12 Score=41.10 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=12.5
Q ss_pred HHHHHHhhhccCHHHHHHHHHHHHhC
Q 002795 646 TELFESNEDRISRDKLEKLLNALCNC 671 (880)
Q Consensus 646 ~~ll~a~~~~~~~~~a~~l~~~~~~~ 671 (880)
.+++.++.-.++.+.+.+..+.|.+.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34444444444555555555554444
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.36 E-value=1.1 Score=45.93 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHH
Q 002795 311 EPDLVVYNAVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~ 385 (880)
+.|-.+|-+++..+.. .+..+-....++.|.+.|+.-|..+|+.||+.+-+..- .| ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HH
Confidence 4455555555554432 23444444555555555665566666555554432211 11 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 435 (880)
++....-.|-+ .-+-+++++++|...|+.||..+-..|+.++.+.+..
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11222222221 1234678888888888888888888888888776654
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.32 E-value=2.3 Score=48.24 Aligned_cols=81 Identities=9% Similarity=0.133 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| -+|....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 344555555555555555555555554321 3344444555555555555444444443 1333344
Q ss_pred HHHhcCCHHHHHHHHH
Q 002795 393 AFWEEGKINEAVAAVR 408 (880)
Q Consensus 393 ~~~~~g~~~~A~~~~~ 408 (880)
++.-.|++++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444455555544443
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.22 E-value=11 Score=38.57 Aligned_cols=133 Identities=8% Similarity=-0.017 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII- 463 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~- 463 (880)
.+.+.++..+.-.|.+.-.+.++.+..+++..-++.....|.+.-.+.|+.+.|...|++..+ ...+.+..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHHHHh
Confidence 455667777777778888888888888877666777777777777788888888888887665 333344444443332
Q ss_pred ----HHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 464 ----SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 464 ----a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.|.-.+++..|...|.++....+.|+..-|.-.-++.-.|+..+|++..+.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2444677788888888877765666666665554555568888999999988874
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.05 E-value=15 Score=39.73 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=119.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH--HHHHHHHHH---HhCC
Q 002795 360 LQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGTAS--VYYELACCL---CNNG 433 (880)
Q Consensus 360 ~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~--t~~~Li~~~---~~~g 433 (880)
-+.|+.+.|.++-+..-..- +-=...+.+++...|..|+++.|+++++.-....+ .++.. .-..|+.+- .-..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34555555555555544432 11134555566666666666666666655443322 22221 111121111 1122
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 434 RWQDAMLVVEKIKSLRHSKPLEI-TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 512 (880)
Q Consensus 434 ~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf 512 (880)
+...|...-.+..+ ..|+.. .-.....++.+.|++.++-.+++.+-+. .|.+..+. +..+.+.|+ .++.-+
T Consensus 244 dp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-ePHP~ia~--lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-EPHPDIAL--LYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-CCChHHHH--HHHHhcCCC--cHHHHH
Confidence 34444444444333 455543 2333446677888888888888887662 24444432 223344444 344444
Q ss_pred HHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHH
Q 002795 513 EETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA-SRAGKCHL 590 (880)
Q Consensus 513 ~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~-~~~G~~~~ 590 (880)
++..+.. .++| +..+...+..+....|++..|..--+.... ..|....|..|-+.- +..|+-.+
T Consensus 316 kRa~~L~------------slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 316 KRAKKLE------------SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred HHHHHHH------------hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHH
Confidence 4433322 1556 445666677777777888777665555443 577777777766664 45688888
Q ss_pred HHHHHHHHHHCCCCC
Q 002795 591 LEHAFDSLLEAGEIP 605 (880)
Q Consensus 591 A~~~~~~m~~~g~~p 605 (880)
+.+.+.+.....-.|
T Consensus 382 vR~wlAqav~APrdP 396 (531)
T COG3898 382 VRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHhcCCCCC
Confidence 888888877754444
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.04 E-value=1 Score=46.11 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 002795 367 LVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKI-NEAVAAVRNMEQ 412 (880)
Q Consensus 367 ~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~-~~A~~~~~~m~~ 412 (880)
-+..++++|...|+.||..+-..|++++.+.+.. .+..++.-.|.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 5789999999999999999999999999988763 345555555543
No 227
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.02 E-value=16 Score=39.70 Aligned_cols=282 Identities=13% Similarity=0.119 Sum_probs=181.5
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHH----HHHHHHH
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI--LGKAGRPHEALRIFNLMLEDCNLYPDIAAYH----SVAVTLG 275 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~--~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~----~ll~~~~ 275 (880)
..|+-..|+++-.+..+.-. .|....-.|+.+ -.-.|+++.|.+-|+.|.. |+.|-- .|.-..-
T Consensus 96 gAGda~lARkmt~~~~~lls----sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAq 165 (531)
T COG3898 96 GAGDASLARKMTARASKLLS----SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred ccCchHHHHHHHHHHHhhhh----ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHH
Confidence 45778888887776543221 232233333332 2346999999999999987 333432 2333334
Q ss_pred hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHHH--H
Q 002795 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG-LKPSAAT--Y 352 (880)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t--~ 352 (880)
+.|..+.|...-+..... -+.-.-.+.+.+...+..|+|+.|+++++.-+... +.++..- -
T Consensus 166 r~GareaAr~yAe~Aa~~----------------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r 229 (531)
T COG3898 166 RLGAREAARHYAERAAEK----------------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR 229 (531)
T ss_pred hcccHHHHHHHHHHHHhh----------------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH
Confidence 668888888877777664 33445678889999999999999999998876543 3444422 2
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHHHcCCCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 353 GLAMEVML---QSGKYDLVHEFFRKMAKSGEAIGALT-YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 428 (880)
Q Consensus 353 ~~ll~a~~---~~g~~~~A~~l~~~m~~~g~~~d~~~-~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~ 428 (880)
..|+.+-+ -..+...|...-.+..+. .||..- --.-..++.+.|++.++-.+++.+-+..+.|+.. ..
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~l 301 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LL 301 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HH
Confidence 22333221 123445566655555553 444322 2234567889999999999999999988777543 22
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc-CCHH
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN-DMFS 506 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~-g~~~ 506 (880)
|....--+.++.-+++..+....+||. .+...+..+-...|++..|+.--+.... ..|....|..|.+.-... |+-.
T Consensus 302 Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg 380 (531)
T COG3898 302 YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQG 380 (531)
T ss_pred HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchH
Confidence 444433445566666666656677776 3455666777788998888766555443 457777787777765544 9999
Q ss_pred HHHHHHHHHHHc
Q 002795 507 KAKELFEETTRA 518 (880)
Q Consensus 507 ~A~~lf~~m~~~ 518 (880)
++...+.+..+.
T Consensus 381 ~vR~wlAqav~A 392 (531)
T COG3898 381 KVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcC
Confidence 999999888775
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.60 E-value=21 Score=40.16 Aligned_cols=199 Identities=13% Similarity=0.037 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~ 395 (880)
.+..|-.++- ..+...-.+.-.+..+ +.||-.+.- ++-+--.+..+.+++++|++..+.| ...+.
T Consensus 171 Aq~IMq~AWR-ERnp~aRIkaA~eALe--i~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAg----E~~lg------- 235 (539)
T PF04184_consen 171 AQEIMQKAWR-ERNPQARIKAAKEALE--INPDCADAY-ILLAEEEASTIVEAEELLRQAVKAG----EASLG------- 235 (539)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHH--hhhhhhHHH-hhcccccccCHHHHHHHHHHHHHHH----HHhhc-------
Confidence 3444444443 3344443444444433 345443322 2222233455778888888877764 11111
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 002795 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 475 (880)
Q Consensus 396 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~ 475 (880)
+....+..-..++.+..++..+-..+-..+..++-+.|+.++|++.|++|.+.....-+......|+.++...+.+.++.
T Consensus 236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 00000011111222223333333333344666666778888888887777652221112234566777777777777777
Q ss_pred HHHHHHhhCCCCC--HHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCCCccccCCC
Q 002795 476 SIFQHMKDHCEPN--IGTVNAMLKVYSRNDM---------------FSKAKELFEETTRANSSGYTFLSGD 529 (880)
Q Consensus 476 ~i~~~m~~~~~pd--~~~~~~Li~~~~~~g~---------------~~~A~~lf~~m~~~g~~~~~~l~~~ 529 (880)
.++.+-.+-..|. ..+|+..+--+-..++ -..|.+.+.+..+.+.+....+.+.
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 7777765421222 3455554432222221 1246677888877775555444443
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.35 E-value=6.5 Score=36.74 Aligned_cols=42 Identities=7% Similarity=0.092 Sum_probs=19.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
++..+...+.......+++.+...+ ..+...+|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4444444445555555555554444 23444455555555443
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.30 E-value=0.41 Score=39.67 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLMLED---CN-LYPD-IAAYHSVAVTLGQVGLLKELVKLIERMR 291 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m~~~---~g-~~pd-~~t~~~ll~~~~~~g~~~~A~~l~~~m~ 291 (880)
+|+.+...|...|++++|+..|++..+. .| -.|+ ..+++.+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554421 01 0111 3345555556666666666666665543
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.20 E-value=9.8 Score=43.77 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHHh----c
Q 002795 207 RQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI-----AAYHSVAVTLGQ----V 277 (880)
Q Consensus 207 ~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~-----~t~~~ll~~~~~----~ 277 (880)
.-..-+|.-++..-| | ....+++..+=.|+-+.+++++....+..++.-.. .+|+.++..++. .
T Consensus 174 ~~G~G~f~L~lSlLP----p---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~ 246 (468)
T PF10300_consen 174 YFGFGLFNLVLSLLP----P---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGED 246 (468)
T ss_pred HHHHHHHHHHHHhCC----H---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccC
Confidence 334556666655433 2 45677777778888888888888876653333221 234444444433 3
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHH-HHHhcCCCHHHHHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL-NACVPSHQWKGVFWVFKQLR 341 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll-~~~~~~g~~~~A~~l~~~m~ 341 (880)
...+.|.+++..+.+. -|+...|...- +.+...|+.++|++.|+...
T Consensus 247 ~~~~~a~~lL~~~~~~-----------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR-----------------YPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred CCHHHHHHHHHHHHHh-----------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4556667777776653 34544443332 23555667777777766544
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.87 E-value=0.45 Score=39.41 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR--DLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~d-~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
..+++.+...|...|++++|+..|+.+++..... ..++ ..+++.+..+|...|++++|++.|++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777888888888888887776541111 1122 45788888888888888888888887654
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.83 E-value=2.8 Score=46.65 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA--SVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 382 ~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+...|+.+..+|.+.|++++|+..|++.++.++.... .+|+.+..+|...|+.++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566777777777777777777777776665433221 3466677777777777777777777665
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.75 E-value=2.1 Score=47.57 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 002795 485 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVY 560 (880)
Q Consensus 485 ~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~----~t~~~ll~a~~~~~~~~~A~~l~ 560 (880)
.+.+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|.+.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALE---------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455788999999999999999999999999998 45864 46999999999999999999999
Q ss_pred HHHHHC
Q 002795 561 KGMALS 566 (880)
Q Consensus 561 ~~m~~~ 566 (880)
++.++.
T Consensus 136 rrALel 141 (453)
T PLN03098 136 RTALRD 141 (453)
T ss_pred HHHHHh
Confidence 999874
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.56 E-value=7.9 Score=36.17 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 002795 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWE 396 (880)
Q Consensus 317 y~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~ 396 (880)
...++..+...+.......+++.+...+. .+...++.++..|++... ......+.. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 45677888888899999999999887763 577788889999887643 223333321 1 122333345566666
Q ss_pred cCCHHHHHHHHHHH
Q 002795 397 EGKINEAVAAVRNM 410 (880)
Q Consensus 397 ~g~~~~A~~~~~~m 410 (880)
.+.++++..++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666666554
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.18 E-value=9.2 Score=44.00 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHh
Q 002795 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325 (880)
Q Consensus 246 ~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~ 325 (880)
-...+|+-+..- +||. +..++...+=.|+-+.+++++.+..+.++- .......-...|+.++..++
T Consensus 175 ~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i---------~~~la~L~LL~y~~~~~~~~ 240 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENI---------RSPLAALVLLWYHLVVPSFL 240 (468)
T ss_pred HHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCc---------chHHHHHHHHHHHHHHHHHc
Confidence 345566766663 4443 445666667779999999998887664310 00000011224555555443
Q ss_pred c----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhc
Q 002795 326 P----SHQWKGVFWVFKQLRKSGLKPSAATYGLA-MEVMLQSGKYDLVHEFFRKMAKSG---EAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 326 ~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~A~~l~~~m~~~g---~~~d~~~~~~Li~~~~~~ 397 (880)
. ..+.+.|.+++..+.+. -|+...|... .+.+...|++++|.+.|+...... .+.....+--+.-.+.-.
T Consensus 241 ~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 241 GIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred CCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH
Confidence 3 45667788888888764 5666555433 344567788888888888655321 112233444455566777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCH-------HHHHHHHHHHHh
Q 002795 398 GKINEAVAAVRNMEQRGVVGTASVYY-ELACCLCNNGRW-------QDAMLVVEKIKS 447 (880)
Q Consensus 398 g~~~~A~~~~~~m~~~g~~p~~~t~~-~Li~~~~~~g~~-------~~A~~l~~~m~~ 447 (880)
+++++|...|..+.+.+-- +..+|. ....++...|+. ++|..+|.+...
T Consensus 319 ~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred chHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7788888888777765432 122222 223334455666 666666666544
No 237
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.97 E-value=42 Score=40.20 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 002795 159 RVLVDRLSEREMTAKNWKFVRIMNQS----GLMFTEGQMLKL-LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 159 ~~li~~l~~~~~~~~A~~l~~~m~~~----g~~~~~~~~~~l-l~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~ 233 (880)
..++..+.+.+... |...++...+. +..+-...|..+ +..+...++...|.+.++.+.........+-++++-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 34556666666555 88888776652 222223333333 3333334899999999998877654344456666666
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHcC-C-------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 002795 234 LLAILGK--AGRPHEALRIFNLMLEDC-N-------LYPDIAAYHSVAVTL--GQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 234 Ll~~~~~--~g~~~~A~~lf~~m~~~~-g-------~~pd~~t~~~ll~~~--~~~g~~~~A~~l~~~m~~ 292 (880)
++.+... .+.++++.+.++.+.... + -.|-..+|..++..+ ...|+++.+...+.++..
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666553 466777888777773320 1 134566777777655 456887777766655543
No 238
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.81 E-value=13 Score=35.83 Aligned_cols=124 Identities=9% Similarity=0.059 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 533 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG--KCHLLEHAFDSLLEAGEIPHPLFF 610 (880)
Q Consensus 533 ~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G--~~~~A~~~~~~m~~~g~~p~~~~~ 610 (880)
+.|+...|..++..+.+.|.+....+ ++..++-+|.......+-.+.... -..-|.+++.++.. .+
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~ 92 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------AY 92 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------hH
Confidence 78999999999999999998776554 445577777655554443332211 13334444444432 35
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 002795 611 TEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCN 672 (880)
Q Consensus 611 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~ 672 (880)
..++..+...|++-+|+++.+.... .+...-..++.+..+.++......+++.+.+.+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5567788899999999999988632 222233456777677777777777777766654
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.22 E-value=6.4 Score=44.71 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
....+.++.-|-+.|..+.|+.+...- ..-.....+.|+++.|.++... ..+...|..|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~---------~~~~~~W~~L 353 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKE---------LDDPEKWKQL 353 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCC---------CSTHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHh---------cCcHHHHHHH
Confidence 344556666666666666666553221 1233444566677776666432 1466778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.......|
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------------------- 403 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG-------------------- 403 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc--------------------
Confidence 8888888888888887777653 4555556677777777666666666554
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQ 339 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~ 339 (880)
-+|....++.-.|+.++..+++.+
T Consensus 404 -~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 -DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 144444555555666666655543
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.19 E-value=28 Score=36.95 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWK---GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li 391 (880)
.++..++.+|...+..+ +|..+++.+...... ...+|..-+.++.+.++.+.+.+++.+|+..- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667777787777655 455666666543221 24445566777777888999999999998863 21234455555
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCCCC
Q 002795 392 RAFWEE--GKINEAVAAVRNMEQRGVVGT 418 (880)
Q Consensus 392 ~~~~~~--g~~~~A~~~~~~m~~~g~~p~ 418 (880)
..+-.. .....|...++.+....+.|.
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 444221 223456666666554444443
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.13 E-value=8.9 Score=34.93 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHh
Q 002795 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQ 276 (880)
Q Consensus 199 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~--~t~~~ll~~~~~ 276 (880)
+++..|+++.|++.|...+..-| ....+||.-..++.-.|+.++|+.-+++..+-.|-+--. .+|.--...|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 56778899999999988877655 456789999999999999999998888887753332111 123233345667
Q ss_pred cCCHHHHHHHHHHHHhCCc
Q 002795 277 VGLLKELVKLIERMRQKPS 295 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~ 295 (880)
.|+.+.|..=|+...+.|+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 7888999988888888773
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.10 E-value=15 Score=33.66 Aligned_cols=33 Identities=9% Similarity=-0.080 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002795 535 PDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567 (880)
Q Consensus 535 Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g 567 (880)
|++.....+..||.+.|+..++.+++.+.-+.|
T Consensus 118 ~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444444444444444444444444444444443
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.03 E-value=15 Score=33.63 Aligned_cols=139 Identities=15% Similarity=0.265 Sum_probs=82.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHH
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ 319 (880)
-.|.+++..++..+.... .+..-||.+|.-....-+-+-..++++.+-.. ||-
T Consensus 14 ldG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGki------------FDi----------- 66 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKI------------FDI----------- 66 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG------------S-G-----------
T ss_pred HhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhh------------cCc-----------
Confidence 357888888888887775 46667777777666666666666666665432 221
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 002795 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 320 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~ 399 (880)
...|+.......+-.+- .+...+...+.+....|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+
T Consensus 67 -----s~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~ 135 (161)
T PF09205_consen 67 -----SKCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGN 135 (161)
T ss_dssp -----GG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-
T ss_pred -----hhhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcc
Confidence 12344444444443321 133345667777888888888888888877643 5667777778888888888
Q ss_pred HHHHHHHHHHHHHCCCC
Q 002795 400 INEAVAAVRNMEQRGVV 416 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~ 416 (880)
..++.+++.+.-++|++
T Consensus 136 ~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 136 TREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHHTT-H
T ss_pred hhhHHHHHHHHHHhchH
Confidence 88888888888887753
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=12 Score=40.81 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC
Q 002795 457 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD 536 (880)
Q Consensus 457 t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd 536 (880)
+++.+...|.+.+.+..|+..-+......++|+-..---..+|...|+++.|+..|+++++ +.|+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---------------~~P~ 323 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK---------------LEPS 323 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---------------hCCC
Confidence 4555666667777777777777776665666666666666777777777777777777777 4576
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 002795 537 EYTYSSMLEASATA--HQWEYFEYVYKGMAL 565 (880)
Q Consensus 537 ~~t~~~ll~a~~~~--~~~~~A~~l~~~m~~ 565 (880)
...-..=|..|.+. ...+...++|..|..
T Consensus 324 Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 324 NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555544444433 223333556666553
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.00 E-value=5.5 Score=41.24 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
.|+..+..+ ..|++..|...|...++..- ......+--|...+...|+++.|..+|..+.+..++.. .-+...-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CChHHHHHH
Confidence 344433333 23335555555555444220 11223333444555555555555555555544433321 222344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 002795 235 LAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
..+..+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 44445555555555555555543
No 246
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.61 E-value=15 Score=39.32 Aligned_cols=129 Identities=14% Similarity=0.231 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHh--cCC----CHHHHHHHHHHHHHCCC---CCCHH
Q 002795 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV--PSH----QWKGVFWVFKQLRKSGL---KPSAA 350 (880)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~--~~g----~~~~A~~l~~~m~~~g~---~pd~~ 350 (880)
+++...+++.|.+.| ...+..+|-+..-... ... ...+|..+|+.|++... .++..
T Consensus 78 ~~~~~~~y~~L~~~g---------------Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~ 142 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG---------------FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDY 142 (297)
T ss_pred HHHHHHHHHHHHHhc---------------cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccch
Confidence 455667888888887 7777777766433332 233 34578999999997642 34566
Q ss_pred HHHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCcc-H-HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 002795 351 TYGLAMEVMLQSGK----YDLVHEFFRKMAKSGEAIG-A-LTYKVLVRAFWEEGK--INEAVAAVRNMEQRGVVGTASVY 422 (880)
Q Consensus 351 t~~~ll~a~~~~g~----~~~A~~l~~~m~~~g~~~d-~-~~~~~Li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~ 422 (880)
++..++.. ...+ .+.++.+|+.+.+.|+..+ . ...+.++........ ...+.++++.+.+.|+++....|
T Consensus 143 ~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 143 PFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred hHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence 77766654 3333 3568889999998886543 2 333333332222222 45788999999999998887766
Q ss_pred HHH
Q 002795 423 YEL 425 (880)
Q Consensus 423 ~~L 425 (880)
..+
T Consensus 221 p~l 223 (297)
T PF13170_consen 221 PTL 223 (297)
T ss_pred cHH
Confidence 644
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=89.58 E-value=10 Score=36.28 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=64.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 438 (880)
Q Consensus 359 ~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A 438 (880)
+...|++++|..+|.-+...+ .-|..-|..|..+|-..+++++|+..|......++. |...+-.+..+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 457899999999998888765 335666778888888889999999888876654331 111133467888888999999
Q ss_pred HHHHHHHHh
Q 002795 439 MLVVEKIKS 447 (880)
Q Consensus 439 ~~l~~~m~~ 447 (880)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888776
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.56 E-value=38 Score=37.54 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 002795 538 YTYSSMLEASATAHQWEYFEYVYKGMALSG-CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF-FTEMLI 615 (880)
Q Consensus 538 ~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g-~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~ 615 (880)
..|...+.+..+...++.|..+|-+..+.| +.+++.+++++|.-++ .|+...|..+|+.=... .||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888888888999999999999888 5778888888886654 78888899999853332 244333 344666
Q ss_pred HHHHhCCHHHHHHHHHHhhhCCCccC--HHHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 002795 616 QAIVQSNYEKAVALINAMAYAPFHIT--ERQWTELFESNEDRISRDKLEKLLNALCNCN 672 (880)
Q Consensus 616 ~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~ 672 (880)
-+.+-++-+.|..+|++.... +.-+ ...|..+|.--..-|++..+..+-+.+.+.-
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 677778888999999865421 1112 3455556655555666666666666655543
No 249
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.60 E-value=45 Score=37.14 Aligned_cols=423 Identities=10% Similarity=0.038 Sum_probs=230.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAA------YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t------~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
+-+.+++.+|.++|.++.++ ...+... -+.++++|.. .+++.....+....+. .
T Consensus 16 Lqkq~~~~esEkifskI~~e--~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~-----------------~ 75 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE--KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ-----------------F 75 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH--hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh-----------------c
Confidence 45789999999999999875 3333222 3566666654 4566666666666553 2
Q ss_pred CCHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHC--CCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002795 312 PDLVVYNAVLNA--CVPSHQWKGVFWVFKQLRKS--GLKPS------------AATYGLAMEVMLQSGKYDLVHEFFRKM 375 (880)
Q Consensus 312 pd~~ty~~ll~~--~~~~g~~~~A~~l~~~m~~~--g~~pd------------~~t~~~ll~a~~~~g~~~~A~~l~~~m 375 (880)
| ...|-.+..+ +-+.+.+.+|++.+..-... +-.|. -..=+..++.+...|++.+++.++++|
T Consensus 76 ~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 76 G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 2 2234444444 45788899999888766543 32221 111244567778999999999999998
Q ss_pred HHcCC----CccHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH
Q 002795 376 AKSGE----AIGALTYKVLVRAFWEEGK---------------INEAVAAVRNMEQR------GVVGTASVYYELACCLC 430 (880)
Q Consensus 376 ~~~g~----~~d~~~~~~Li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~p~~~t~~~Li~~~~ 430 (880)
...=+ .-+..+||.++-++++.-- ++.+.-+..+|... .+.|.......++.-..
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 86533 3688899987777765421 12222223333222 22333333333333322
Q ss_pred hCC--CHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHhc
Q 002795 431 NNG--RWQDAMLVVEKIKSLRHSKPLEI-TFTGLIISSMDGGHIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSRN 502 (880)
Q Consensus 431 ~~g--~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~a~~~~g~~~~A~~i~~~m~~-----~~~pd~~~~~~Li~~~~~~ 502 (880)
-.. +..--++++....+ .-+.|+.. ....++..+.+ +.+++..+-+.+.. -...-+.++..++...++.
T Consensus 235 i~p~e~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred hCCHhhccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11122233333322 34556543 23344444443 44555444444332 1223467889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHH-------HHHHH----HcCCHHHHHHHHHHHHHCCCCCC
Q 002795 503 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM-------LEASA----TAHQWEYFEYVYKGMALSGCQLD 571 (880)
Q Consensus 503 g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~l-------l~a~~----~~~~~~~A~~l~~~m~~~g~~pd 571 (880)
+...+|.+.+.-+.. +.|+...-.-+ -+..+ ..-++..-+.+|.......+.--
T Consensus 312 ~~T~~a~q~l~lL~~---------------ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI---------------LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HhHHHHHHHHHHHHh---------------cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 999999999988776 34543321111 11111 11234555666766655433322
Q ss_pred HHHHHHHHHH--HHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHh----CCHHHHHHHHHHhhhCCCcc
Q 002795 572 QTKHAWLLVE--ASRAGK-CHLLEHAFDSLLEAGEIPHPLFFTEMLI----QAIVQ----SNYEKAVALINAMAYAPFHI 640 (880)
Q Consensus 572 ~~~~~~ll~~--~~~~G~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~----~~~~~----g~~~~A~~l~~~m~~~~~~p 640 (880)
.-+...+-.+ +-+.|. -+.|.++++.+..- .|...-..+.+. ..+++ ..+.+-+.+-+-+...|+.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 2222222222 556665 77888998887762 333322222322 22222 22444444444445667666
Q ss_pred CHH----HHHHHHHH--hhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcccc
Q 002795 641 TER----QWTELFES--NEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFG 706 (880)
Q Consensus 641 ~~~----~~~~ll~a--~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~ 706 (880)
-.+ .-+.|-.| .-..|++.++.-.-..+.+.. |+..+.+ .+.-++....++.||-..+...
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--PS~~~~R---LlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--PSPQAYR---LLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CcHHHHH---HHHHHHHHHhhHHHHHHHHHhC
Confidence 433 23333333 346788888887777777755 4333333 2344556677888887665553
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=33 Score=36.05 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=85.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 002795 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 198 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
......|++.+|..+|..+....+. +..+--.|..+|...|+++.|..++..++.+. -.........-|..+.+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE----NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc----cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHH
Confidence 3455678888899988888776553 34566678888889999999999999887641 111111112233444444
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAM 356 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll 356 (880)
....+...+-..... .+-|...-..+-..+...|+.+.|++.+-.+.+... .-|...-..++
T Consensus 217 a~~~~~~~l~~~~aa-----------------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 217 AATPEIQDLQRRLAA-----------------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hcCCCHHHHHHHHHh-----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 444444444444433 233555666666777788888888877666654321 12333445555
Q ss_pred HHHHHcC
Q 002795 357 EVMLQSG 363 (880)
Q Consensus 357 ~a~~~~g 363 (880)
..+.-.|
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 5555444
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.54 E-value=7.5 Score=40.27 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 002795 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELA 426 (880)
Q Consensus 351 t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~Li 426 (880)
.|+..+. +.+.|++..|...|...++... ......+-.|..++...|++++|..+|..+.+.-.... ...+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444333 2344455555555555555421 01122333355555555555555555555554322111 12233344
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 002795 427 CCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 427 ~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+..+.|+.++|...|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 444455555555555555544
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=7.1 Score=42.59 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRA 393 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~ 393 (880)
..+++.+.-+|.+.+.+..|+..-++.+..+ .+|....---..+|...|+++.|+..|+.+++.. +-|..+-+-|+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666677777777877777777777654 3466665556677777777778888777777753 3334444444444
Q ss_pred HHhcCCHH-HHHHHHHHHHH
Q 002795 394 FWEEGKIN-EAVAAVRNMEQ 412 (880)
Q Consensus 394 ~~~~g~~~-~A~~~~~~m~~ 412 (880)
--+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44433333 33566666653
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.03 E-value=24 Score=34.03 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=9.6
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 002795 239 GKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 239 ~~~g~~~~A~~lf~~m~~~ 257 (880)
++.+..++|+.-|..+.+.
T Consensus 69 A~~~k~d~Alaaf~~lekt 87 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT 87 (221)
T ss_pred HHcCCchHHHHHHHHHHhc
Confidence 3445555555555555443
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=87.93 E-value=12 Score=35.90 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=69.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
...-.+-..|++++|..+|+-+.-.+ +-+..-+..|...+-..+.+++|...|.......+..+ ..+-....+|.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp----~p~f~agqC~l 116 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY----RPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC----CccchHHHHHH
Confidence 34445557899999999998888766 34555567777777778899999999988766654333 33445566788
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 002795 240 KAGRPHEALRIFNLMLED 257 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~ 257 (880)
..|+.+.|+..|.....+
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 889999999999888874
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.86 E-value=29 Score=34.04 Aligned_cols=189 Identities=14% Similarity=0.066 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHH
Q 002795 327 SHQWKGVFWVFKQLRKSGLK-PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS-GEAIGALTYKVLVRAFWEEGKINEAV 404 (880)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~-g~~~d~~~~~~Li~~~~~~g~~~~A~ 404 (880)
.+....+...+..+...... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555543322 12456666677777777777777777776652 22344566666677777777777888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 405 AAVRNMEQRGVVGTASVYYELAC-CLCNNGRWQDAMLVVEKIKSLRHS--KPLEITFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 405 ~~~~~m~~~g~~p~~~t~~~Li~-~~~~~g~~~~A~~l~~~m~~~~~~--~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
..+.........+... ...... .+...|+++.|...+.+... ... ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLA-EALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchH-HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 8877777655443211 222222 56777777777777777643 111 112223333333355566666666666666
Q ss_pred hhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 482 KDHCEP-NIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 482 ~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
....+. ....+..+...+...+.+..|...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 664444 455666666666666666666666666666
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.71 E-value=21 Score=33.33 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d 227 (880)
...|.. .....+.|++++|.+.|+.+..+-- +.....-..++.++-+.++++.|...++..++..|....-+
T Consensus 11 ~~ly~~-a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 11 QELYQE-AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 344444 4445578999999999999987431 24556778889999999999999999999999887654444
No 257
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.60 E-value=55 Score=36.98 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
..|....-+++..+..+-.+.-+..+..+|...| -+...|-.++.+|... .-+.-..+++++++..+ |-.+..--
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4456667788999999999999999999999865 4777889999999988 55677888998888753 34444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVV-----GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 465 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~ 465 (880)
+..+...++...+..+|.+...+=+. .-...|.-|+.. -..+.+..+.+...+....|...-.+.+--+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444559999999999998765332 112345555431 24567777788888777556555566777777889
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHH
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR--------------------NDMFSKAKELFEETTR 517 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~--------------------~g~~~~A~~lf~~m~~ 517 (880)
....++++|++++..+.++...|...-..++.-+-. -.++.+|+.=|+....
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 999999999999999988766777776666665543 3456677777776654
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.33 E-value=45 Score=35.71 Aligned_cols=136 Identities=16% Similarity=0.237 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 244 PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ--VG----LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 244 ~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~--~g----~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
+++.+.+++.|.+. |+.-+..+|-+....... .. ....|..+|+.|++.... ...++-.++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f------------LTs~~D~~~ 144 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF------------LTSPEDYPF 144 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc------------ccCccchhH
Confidence 34566788888887 888888887664333333 22 346789999999986411 135677777
Q ss_pred HHHHHHHhcCCCH----HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 318 NAVLNACVPSHQW----KGVFWVFKQLRKSGLKPSA--ATYGLAMEVMLQSGK--YDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 318 ~~ll~~~~~~g~~----~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~--~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
..++.. ...+. +.+..+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.|+++....|..
T Consensus 145 a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 145 AALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 787765 33333 5678889999998887643 333444433322222 4578899999999998887777665
Q ss_pred HHHHH
Q 002795 390 LVRAF 394 (880)
Q Consensus 390 Li~~~ 394 (880)
+.-..
T Consensus 223 lGlLa 227 (297)
T PF13170_consen 223 LGLLA 227 (297)
T ss_pred HHHHH
Confidence 54433
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=43 Score=35.27 Aligned_cols=143 Identities=11% Similarity=0.052 Sum_probs=90.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.....|++.+|..+|...... .+-+...--.+..+|...|+.+.|..++..+...--.......
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~----------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA----------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh----------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence 456778888888888888775 3344555666777888888888888888887543222222222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GTASVYYELACCLCN 431 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~Li~~~~~ 431 (880)
..-|..+.+.....+...+-...-.. +-|...-..+...|...|+.+.|.+.+-.+.+++.. -|...-..|+..+.-
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 23345555555555555555555443 336777777888888889999888887777765321 123334455555554
Q ss_pred CC
Q 002795 432 NG 433 (880)
Q Consensus 432 ~g 433 (880)
.|
T Consensus 285 ~g 286 (304)
T COG3118 285 FG 286 (304)
T ss_pred cC
Confidence 44
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=82 Score=37.89 Aligned_cols=183 Identities=9% Similarity=0.110 Sum_probs=115.1
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHhCcCCCCCCC
Q 002795 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGL----GDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (880)
Q Consensus 152 ~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~----~~~g~~~~A~~l~~~~~~~~~~~~~~d 227 (880)
+-.......-++.+++...+.-|+.+-+. .+ .+..+...+...| -+.|++++|..-+-+.+..- .|
T Consensus 331 ~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l----e~- 400 (933)
T KOG2114|consen 331 ELIEKDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL----EP- 400 (933)
T ss_pred eeeeccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC----Ch-
Confidence 33445667788899999999999877554 33 3445555555444 57899999998887665322 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCC
Q 002795 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (880)
Q Consensus 228 ~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~ 307 (880)
..++.-|....+..+-..+++.+.+. |+ .+...-+.|+.+|.+.++.++-.++..... .|.
T Consensus 401 ----s~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~------------ 461 (933)
T KOG2114|consen 401 ----SEVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE------------ 461 (933)
T ss_pred ----HHHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc------------
Confidence 23455566666777777788888886 44 234445678999999999988776665543 220
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002795 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMA 376 (880)
Q Consensus 308 ~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 376 (880)
. ..-....+..|.+.+-.++|..+-..... +......++ -..+++++|.+.+..+.
T Consensus 462 --~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 462 --W---FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred --e---eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 1 11134456666666767776654443321 333333333 45688889988887653
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.50 E-value=32 Score=33.21 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002795 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254 (880)
Q Consensus 175 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m 254 (880)
++.++.+.+.+++|+...+..+++.+.+.|++..-.+++..= -..++..+-..|++. .+....+.++=-+|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~------Vi~DSk~lA~~LLs~---~~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH------VIPDSKPLACQLLSL---GNQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc------ccCCcHHHHHHHHHh---HccChHHHHHHHHH
Confidence 455667777888888888888888888888887777766521 122333333333332 22334444444444
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 255 ~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
.++ =...+..++..+...|++-+|+.+....
T Consensus 85 LkR-----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 85 LKR-----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHH-----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 443 1114556667777788888888777665
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.12 E-value=27 Score=31.94 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-
Q 002795 497 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK- 574 (880)
Q Consensus 497 ~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~- 574 (880)
-+++..|+.+.|++.|.+.+.. -| ....||.-..++.-.|+.++|+.=+++..+..-.-....
T Consensus 51 valaE~g~Ld~AlE~F~qal~l---------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL---------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh---------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 3567889999999999999884 35 778999999999999999999999988876522223222
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002795 575 --HAWLLVEASRAGKCHLLEHAFDSLLEAGE 603 (880)
Q Consensus 575 --~~~ll~~~~~~G~~~~A~~~~~~m~~~g~ 603 (880)
|..--..|-..|+-+.|..=|+...+.|.
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 22222236778999999998887776553
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.95 E-value=36 Score=33.27 Aligned_cols=202 Identities=15% Similarity=0.124 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
...+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 445555555566666666666665555432 122334444455555555566666666666666543222 112222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHh
Q 002795 393 -AFWEEGKINEAVAAVRNMEQRGV--VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP--LEITFTGLIISSMD 467 (880)
Q Consensus 393 -~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~ll~a~~~ 467 (880)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..... ..+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHH
Confidence 56677777777777777644221 11223333334445667777888887777766 222 24566667777777
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 468 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
.+..+.+...+.......+.....+..+...+...+..+++...+.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888887777433334455555555556677888888888887743
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.92 E-value=46 Score=34.37 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 460 GLIISSMDGGHIDDCISIFQHMKDHCE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 460 ~ll~a~~~~g~~~~A~~i~~~m~~~~~---pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
.+..-|.+.|.+..|..-++.|.+..+ -....+-.|..+|-+.|-.++|...-.-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345668889999999999999988532 3345666778889999999988887666555
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.79 E-value=75 Score=36.73 Aligned_cols=169 Identities=9% Similarity=-0.047 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 487 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS 566 (880)
Q Consensus 487 pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~ 566 (880)
++..+|+..+.--...|+++.+.-+|++..-- +..-...|-..+.-....|+...|..++....+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------------CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 45677888888778888888888888877541 2223334555555555557777777666655443
Q ss_pred CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHhCCHHHHH---HHHHHhhhCCCcc
Q 002795 567 GCQ--LDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT-EMLIQAIVQSNYEKAV---ALINAMAYAPFHI 640 (880)
Q Consensus 567 g~~--pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~---~l~~~m~~~~~~p 640 (880)
-++ |....+.+.+ .-..|++..|..+++.+.+.- |..+... .-+....+.|+.+.+. .++.........+
T Consensus 361 ~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred cCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 222 2222222222 234578888888888776642 4332221 1233344556666666 4443333211111
Q ss_pred CH--HHHHHHHH-HhhhccCHHHHHHHHHHHHhCCC
Q 002795 641 TE--RQWTELFE-SNEDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 641 ~~--~~~~~ll~-a~~~~~~~~~a~~l~~~~~~~~~ 673 (880)
.. ..+..... .+.-.++.+.|..++..+.+..+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 11 11111111 12334566677777777666554
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.79 E-value=13 Score=39.52 Aligned_cols=153 Identities=7% Similarity=-0.042 Sum_probs=94.1
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHH----HHHHHHHHhcCC
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV----NAMLKVYSRNDM 504 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~----~~Li~~~~~~g~ 504 (880)
+--.|+..+|-..++++.+ ..+.|..++.-.=.+|...|+.+.-...++++.....+|...| ..+.-++..+|.
T Consensus 113 ~~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456777777777888776 3444556666666788888888888888888776544444322 333444556888
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 002795 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD---QTKHAWLLVE 581 (880)
Q Consensus 505 ~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd---~~~~~~ll~~ 581 (880)
+++|.+.-++..+.+ +.|...-.++...+...++..++.++..+-...--..+ ..-|-...-.
T Consensus 191 y~dAEk~A~ralqiN--------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN--------------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF 256 (491)
T ss_pred chhHHHHHHhhccCC--------------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh
Confidence 888888888877743 23656666666666677888888776554322100000 1112222223
Q ss_pred HHHcCCHHHHHHHHHH
Q 002795 582 ASRAGKCHLLEHAFDS 597 (880)
Q Consensus 582 ~~~~G~~~~A~~~~~~ 597 (880)
+...+.++.|+++|+.
T Consensus 257 ~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDR 272 (491)
T ss_pred hhcccchhHHHHHHHH
Confidence 4455777777777774
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=85.53 E-value=55 Score=36.86 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002795 503 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVE 581 (880)
Q Consensus 503 g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~ 581 (880)
....+|.++-++..+.+ .-|......+..+....++++.|..+|++... +.|| ..+|...-..
T Consensus 318 ~~~~~a~~~A~rAveld--------------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 318 LAAQKALELLDYVSDIT--------------TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHH
Confidence 34567777777777754 23777777777777777788888888888775 5676 3444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHh
Q 002795 582 ASRAGKCHLLEHAFDSLLEAGEIPHPLFF---TEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 582 ~~~~G~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
+..+|+.++|.+.+++..+.. |..... ...+..|+ ...+++|+.++-+-
T Consensus 382 ~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 566788888888888866532 432222 11222332 34567777776543
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.41 E-value=22 Score=33.24 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l 270 (880)
..|..- ....+.|+++.|.+.|+.+...-|.+. -...+.-.|+.+|.+.+++++|...+++..+.....|+ +-|...
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGE-YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 344444 444577999999999999987765433 35578888999999999999999999999986444444 344444
Q ss_pred HHHHHh
Q 002795 271 AVTLGQ 276 (880)
Q Consensus 271 l~~~~~ 276 (880)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.26 E-value=49 Score=35.28 Aligned_cols=153 Identities=11% Similarity=0.091 Sum_probs=110.3
Q ss_pred hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHH-
Q 002795 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA--ATY- 352 (880)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~- 352 (880)
..|...+|...++++.+. .+.|..+++..=.+|.-+|+...-...+++..-. ..||. .+|
T Consensus 115 ~~g~~h~a~~~wdklL~d----------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv 177 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD----------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYV 177 (491)
T ss_pred ccccccHHHHHHHHHHHh----------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHH
Confidence 467888888888888876 7889999999999999999999999999888643 12333 223
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 002795 353 -GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT---ASVYYELACC 428 (880)
Q Consensus 353 -~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~Li~~ 428 (880)
....-++..+|-+++|++.-++..+.+ +.|.-.-.++...+-..|++.++.++..+-...--..+ ..-|-...-.
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF 256 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh
Confidence 333334468899999999999888876 56777778888888899999999988776443211111 0112223334
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 002795 429 LCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~ 446 (880)
+...+.++.|+.+|+.-.
T Consensus 257 ~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhcccchhHHHHHHHHHH
Confidence 567789999999998643
No 270
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=18 Score=41.47 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
.+.-..+++.+.+.|..++|+++ .+|... -.....+.|+++.|.++..+. .+..-|..|
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~---------~s~~Kw~~L 672 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA---------NSEVKWRQL 672 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh---------cchHHHHHH
Confidence 45667888888888888888755 223221 233445678899998887655 456779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.| .
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g----------------~--- 723 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQG----------------K--- 723 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhc----------------c---
Confidence 9999999999999999887653 5667777777888776666655565554 1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQL 340 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m 340 (880)
.|...-+|...|+++++++++..-
T Consensus 724 --~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 --NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233344566778999888777553
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.68 E-value=9 Score=40.26 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCCHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE----DCNLYPDIA 265 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~----~~g~~pd~~ 265 (880)
..++..++..+...|+++.+...++..+...+ -+...|..++.+|.+.|+...|+..|+.+.. ..|+.|-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp----~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP----YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 35667788888888999999999998887654 6778899999999999999999998888765 357888877
Q ss_pred HHHHHHHH
Q 002795 266 AYHSVAVT 273 (880)
Q Consensus 266 t~~~ll~~ 273 (880)
+.......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 77665554
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.24 E-value=3 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCc
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~ 220 (880)
++..+...|...|++++|.++|+.+++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555555555543
No 273
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.06 E-value=97 Score=35.85 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG-QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~-~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~ 309 (880)
|-.....=.+.|..+.+.++|++-.. +++-+...|...+..+. ..|+.+.....|+......+.
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~------------- 146 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL------------- 146 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc-------------
Confidence 33444444455666666666666665 45555555555444332 335555555666655543211
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~ 342 (880)
.-.....|...|.--..++++.....+|++.++
T Consensus 147 dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 147 DFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred chhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 122334455555555566666666666666654
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.06 E-value=29 Score=33.18 Aligned_cols=15 Identities=13% Similarity=0.556 Sum_probs=6.6
Q ss_pred cCCCHHHHHHHHHHH
Q 002795 326 PSHQWKGVFWVFKQL 340 (880)
Q Consensus 326 ~~g~~~~A~~l~~~m 340 (880)
+.|+|.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 344444444444444
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.96 E-value=25 Score=37.78 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC---H
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS---RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD---I 264 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d---~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd---~ 264 (880)
.+|..+..+.++.|.+++++..--..+..-.. ...+ ..+|-.|..++-+.-++.+++.+-..-...+|..|. -
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~-~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE-LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 34555666666666666654432211111000 0011 234555556666666666666666555554444441 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH---
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR--- 341 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~--- 341 (880)
....++..++...+.++++++.|+...+.... .=| .-.....|-.|-+.|.+..|+++|+-+..+..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~--------~~D--~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHN--------NDD--AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc--------cCC--ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 22334555666667777787777776543200 000 11123356667777777777777766555443
Q ss_pred -HCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHH----cCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 342 -KSGLKPSAATYGL-----AMEVMLQSGKYDLVHEFFRKMAK----SGEA-IGALTYKVLVRAFWEEGKINEAVAAVRN 409 (880)
Q Consensus 342 -~~g~~pd~~t~~~-----ll~a~~~~g~~~~A~~l~~~m~~----~g~~-~d~~~~~~Li~~~~~~g~~~~A~~~~~~ 409 (880)
..++.-=..-|.. +.-++...|.+..|.+.-++..+ .|-. .-....-.+.+.|-..|+.+.|+.-|+.
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2222211111211 22334455555555555544332 2211 1122333445555556666665555544
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.71 E-value=12 Score=39.47 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK-- 342 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~-- 342 (880)
.++..++..+...|+++.+.+.++++... .+-|...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~----------------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL----------------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 35666777788888888888888888876 567888888899999999998888888888764
Q ss_pred ---CCCCCCHHHHHHHHHH
Q 002795 343 ---SGLKPSAATYGLAMEV 358 (880)
Q Consensus 343 ---~g~~pd~~t~~~ll~a 358 (880)
.|+.|...+......+
T Consensus 218 ~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 218 AEELGIDPAPELRALYEEI 236 (280)
T ss_pred hhhcCCCccHHHHHHHHHH
Confidence 5777776665544443
No 277
>PRK11906 transcriptional regulator; Provisional
Probab=82.57 E-value=63 Score=36.40 Aligned_cols=161 Identities=13% Similarity=0.145 Sum_probs=95.6
Q ss_pred HHH--HHHHHHHhcC-----CCHHHHHHHHHHHH-HCCCCCC-HHHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 002795 315 VVY--NAVLNACVPS-----HQWKGVFWVFKQLR-KSGLKPS-AATYGLAMEVMLQ---------SGKYDLVHEFFRKMA 376 (880)
Q Consensus 315 ~ty--~~ll~~~~~~-----g~~~~A~~l~~~m~-~~g~~pd-~~t~~~ll~a~~~---------~g~~~~A~~l~~~m~ 376 (880)
..| ..++.+.... ...+.|+.+|.+.. ...+.|+ ...|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 6666665442 23467888888887 3335565 3344443333221 223456777777777
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH
Q 002795 377 KSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 456 (880)
Q Consensus 377 ~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 456 (880)
+.+ +.|..+...+..+.+-.|+++.|...|++....++. ...+|......+.-+|+.++|...+++..+ ..|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr---LsP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ---LEPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCchhh
Confidence 776 557777777777777788888888888888776543 234454455556678888888888888665 334322
Q ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 457 ---TFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 457 ---t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
..-..+..|+. ..++.|+++|-+-
T Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 407 KAVVIKECVDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHHcC-CchhhhHHHHhhc
Confidence 22222334443 3455555555443
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.11 E-value=9.8 Score=37.34 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002795 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 266 t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~ 342 (880)
.+..+...|++.|+.+.|++.|.++...... ...-+..+-.+|..+.-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTS-------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666677777777777777776654310 222334556667777777777777777666643
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.03 E-value=97 Score=35.10 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=52.7
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCcC
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGD-KGSWRQAMSVLDWVYGLKD 221 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~l~~~~~~~~~ 221 (880)
...+|+..|..-+.-+.+.+.+.+.-.+|..|.... +.++..|.......-. ..+.+.|+.+|..-++..+
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 455688888888888888888999999999999865 4555666554444433 3449999999998877655
No 280
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.68 E-value=12 Score=37.17 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002795 172 AKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248 (880)
Q Consensus 172 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~ 248 (880)
+.|+..|-.+...+.--++.....|...|. ..+.++|..++-.++.........|+.++.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555555555554444444444444444 4666777777777666665554566777777777777777766653
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.60 E-value=11 Score=43.00 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 002795 351 TYGLAMEVMLQSGKYDLVHEFFR 373 (880)
Q Consensus 351 t~~~ll~a~~~~g~~~~A~~l~~ 373 (880)
-|..|..+..+.+++..|.+.|.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHH
Confidence 34444444444444444444443
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.51 E-value=27 Score=33.40 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=69.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 002795 322 NACVPSHQWKGVFWVFKQLRKSGLKPSA---ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEG 398 (880)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g 398 (880)
..-.+.++.+.+..++..|+.. .|.. .++-.. .+...|++.+|.++|+.+.... |......+|+..|....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 3345778999999999999864 4543 333333 3578999999999999988764 44444555665555444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 399 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440 (880)
Q Consensus 399 ~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 440 (880)
.-..=..+-+++.+.+..|+.. .++..+........|..
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred CChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 3333333444566666555443 36666666555554443
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.15 E-value=1.2e+02 Score=36.18 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCH-------HHHHHHHHHHH
Q 002795 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW-------KGVFWVFKQLR 341 (880)
Q Consensus 269 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~-------~~A~~l~~~m~ 341 (880)
.+|-.|.++|++++|.++....... .......+-..+..|+...+- +....-|++..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~----------------~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~ 179 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ----------------FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRI 179 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG----------------S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh----------------hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 5667788999999999999665544 344444555666666554222 34444555554
Q ss_pred HC
Q 002795 342 KS 343 (880)
Q Consensus 342 ~~ 343 (880)
+.
T Consensus 180 r~ 181 (613)
T PF04097_consen 180 RN 181 (613)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 284
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.22 E-value=9.1 Score=40.20 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC--HHHHHHHHHHHhcCCCHHHHHHH
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD--LVVYNAVLNACVPSHQWKGVFWV 336 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd--~~ty~~ll~~~~~~g~~~~A~~l 336 (880)
|.+....+...++..-....+++.+...+-.++...... ..|+ .++|-.++. .-+.++++.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~------------~~~~~~~~~~irlll----ky~pq~~i~~ 122 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW------------YLRNWTIHTWIRLLL----KYDPQKAIYT 122 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh------------hhccccHHHHHHHHH----ccChHHHHHH
Confidence 555566666666666666677888888777776553211 2222 333333322 3456788888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002795 337 FKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG 379 (880)
Q Consensus 337 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g 379 (880)
+..=...|+-||.++++.+|..+.+.+++..|.++...|....
T Consensus 123 l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 123 LVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999888888887777654
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=79.73 E-value=84 Score=34.01 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHH-HHHHH-CCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCC-CCCHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFV-RIMNQ-SGLM---FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRD-LKSRFV 230 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~-~~m~~-~g~~---~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~-~~d~~~ 230 (880)
.+-.+..+.++.|.+++++..- ..|.- .... .--..|..+.+++-+.-++.+++.+-.+-........ ..--..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455667778888888776432 11111 0001 1224556666777777777778877776654422211 111234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYP----DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~p----d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
.-++..++...+.++++++.|+...+-..-.- ....|-.|-+.|.+..++++|+-+.....+.-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s---------- 194 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS---------- 194 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh----------
Confidence 44566677777889999999998765311111 2346888999999999999988776665442100
Q ss_pred CCCCC-CCH-HHHHH-----HHHHHhcCCCHHHHHHHHHHHHHCCCC-CCHHHH----HHHHHHHHHcCChHHHHHHHHH
Q 002795 307 DPVLE-PDL-VVYNA-----VLNACVPSHQWKGVFWVFKQLRKSGLK-PSAATY----GLAMEVMLQSGKYDLVHEFFRK 374 (880)
Q Consensus 307 ~~~~~-pd~-~ty~~-----ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~----~~ll~a~~~~g~~~~A~~l~~~ 374 (880)
.. .|. .-|.. |--++-..|.+..|.+.-++..+..+. .|..++ ..+...|...|+.+.|+.-|++
T Consensus 195 ---~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 195 ---YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred ---cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 11 111 12222 223466678887787777776432221 244444 4466777888999998887776
Q ss_pred HH
Q 002795 375 MA 376 (880)
Q Consensus 375 m~ 376 (880)
..
T Consensus 272 Am 273 (518)
T KOG1941|consen 272 AM 273 (518)
T ss_pred HH
Confidence 43
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.46 E-value=23 Score=34.78 Aligned_cols=101 Identities=17% Similarity=0.045 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCH----
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMF--TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR---- 228 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~---- 228 (880)
...+..+.+.+++.|+.+.|++.|..+...-..+ -...+..+|+.....+++..+......+......+...+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3577899999999999999999999998865443 3467789999999999999999998887655443222221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 229 ~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
.+|..|. +...|++..|-+.|-+....
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccCcC
Confidence 2333333 24568999999998887654
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=77.39 E-value=7.8 Score=27.90 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 422 YYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 422 ~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
|..+...|...|++++|..+|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444455555555555554444
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=76.76 E-value=1.4e+02 Score=33.93 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002795 539 TYSSMLEASATAHQWEYFEYVYKGM 563 (880)
Q Consensus 539 t~~~ll~a~~~~~~~~~A~~l~~~m 563 (880)
....|+.++...+.+.++..++.+-
T Consensus 297 IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 297 IRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3344444444445555544444443
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=76.60 E-value=5.6 Score=27.28 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 387 YKVLVRAFWEEGKINEAVAAVRNM 410 (880)
Q Consensus 387 ~~~Li~~~~~~g~~~~A~~~~~~m 410 (880)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666653
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.30 E-value=2.2e+02 Score=35.91 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHH
Q 002795 346 KPSAATYGLAMEVMLQSG--KYDLVHEFFRKMAK 377 (880)
Q Consensus 346 ~pd~~t~~~ll~a~~~~g--~~~~A~~l~~~m~~ 377 (880)
.|+ ...-.+|.+|.+.+ .++.+.....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 456 44566888888887 67777777766665
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.56 E-value=1.9e+02 Score=34.74 Aligned_cols=54 Identities=17% Similarity=-0.037 Sum_probs=30.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCNLYP---DIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g~~p---d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~ 292 (880)
..+.+.+.+++|+.+-+.... ..| -...+...|..+.-.|++++|-...-.|..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 344555666666666555442 333 233455566666666777776666666643
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.53 E-value=81 Score=30.54 Aligned_cols=136 Identities=10% Similarity=0.047 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH---
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTE-GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF--- 229 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~--- 229 (880)
+.+.|...+ -+.+.+..++|+.-|..+.+.|...-+ -............|+...|...|+++-+..+. |-+.
T Consensus 58 sgd~flaAL-~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~rd~ 133 (221)
T COG4649 58 SGDAFLAAL-KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGRDL 133 (221)
T ss_pred chHHHHHHH-HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhhHH
Confidence 345554444 456788999999999999998864322 22334445667889999999999998553322 2211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g 294 (880)
.--.-.-.+..+|.++......+-+... +-+--...--.|.-+-.+.|++..|.+.|..+....
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 1111222456789999888887777654 333344555677777789999999999999998753
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.47 E-value=0.073 Score=50.35 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE 443 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~ 443 (880)
+|..+.+.+.......+++.+...+...+....+.++..|++.++.+..+.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555555444445555556666666655555555444
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.04 E-value=3.6 Score=27.94 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH
Q 002795 226 KSRFVYTKLLAILGKAGRPHEAL 248 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~ 248 (880)
.|..+|+.|...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777777777777777777775
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=74.95 E-value=6.4 Score=26.96 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477888999999999999999998553
No 296
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.90 E-value=1.1e+02 Score=31.70 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGT---ASVYYELACCLCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~Li~~~~~~g~~~~A~~l~~~m~ 446 (880)
+.+-|.+.|.+..|..-+++|.+. ..-+ ...+-.|..+|...|-.++|...-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445566777777777777777665 1111 1233445566666666666655544443
No 297
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.03 E-value=2e+02 Score=34.40 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=111.6
Q ss_pred HHHHHHHHHHH-CCCCCC--HHHHHHHHHHHH-hCCCHHHHHHHHHHHHhCcCCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 002795 173 KNWKFVRIMNQ-SGLMFT--EGQMLKLLKGLG-DKGSWRQAMSVLDWVYGLKDKRDLKSR--FVYTKLLAILGKAGRPHE 246 (880)
Q Consensus 173 ~A~~l~~~m~~-~g~~~~--~~~~~~ll~~~~-~~g~~~~A~~l~~~~~~~~~~~~~~d~--~~~~~Ll~~~~~~g~~~~ 246 (880)
.|+..++.+.+ ..++|. ..++..+...+. ...+++.|+..+++.+....+....|. .....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 35677777773 333332 245566666665 678899999999987655433111121 23345566666666655
Q ss_pred HHHHHHHHHHcCCCC---CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHH
Q 002795 247 ALRIFNLMLEDCNLY---PDIAAYHSV-AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (880)
Q Consensus 247 A~~lf~~m~~~~g~~---pd~~t~~~l-l~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~ 322 (880)
|...+++..+...-. +=...|..+ +..+...+++..|.+.++.+..... ....|-+..+-.++.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~------------~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN------------QRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh------------hcCCHHHHHHHHHHH
Confidence 998888877642111 112223333 2233334799999999988876431 003455556666666
Q ss_pred HHh--cCCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--HcCChHHHHHHHHHH
Q 002795 323 ACV--PSHQWKGVFWVFKQLRKSGL---------KPSAATYGLAMEVML--QSGKYDLVHEFFRKM 375 (880)
Q Consensus 323 ~~~--~~g~~~~A~~l~~~m~~~g~---------~pd~~t~~~ll~a~~--~~g~~~~A~~l~~~m 375 (880)
+.. +.+..+++.+.++.+..... .|-..+|..++..++ ..|++..+...++++
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 643 45666777777777743221 345667777777764 567766666655544
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.44 E-value=8.2 Score=25.72 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 490 GTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 490 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999999884
No 299
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.83 E-value=19 Score=30.99 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 002795 438 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 496 (880)
Q Consensus 438 A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li 496 (880)
+.+-++.+.. ....|++....+.+.+|-+.+++..|.++|+.++.++..+...|..++
T Consensus 26 ~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 26 LRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3344444443 445566666666667776667777777777666654444444555444
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.79 E-value=52 Score=31.00 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=31.5
Q ss_pred hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 002795 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (880)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g 344 (880)
..++.+++..+++.|.-... -.+...++..++ +...|+|.+|..+|+++...+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP--------------~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP--------------NLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC--------------CccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 46777777777777765210 122223333333 566778888888888777654
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.40 E-value=1.3e+02 Score=30.81 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhCCC---ccCHHHHHHHHHHhhhccCHHHHHHHHH
Q 002795 609 FFTEMLIQAIVQSNYEKAVALINAMAYAPF---HITERQWTELFESNEDRISRDKLEKLLN 666 (880)
Q Consensus 609 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~---~p~~~~~~~ll~a~~~~~~~~~a~~l~~ 666 (880)
.|-..|..+....++..|...++.-.+.|- .-+..+...||.+| ..|+.+.+.++++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 344556666667788999999988543322 23456777888886 5678777766654
No 302
>PRK09687 putative lyase; Provisional
Probab=68.67 E-value=1.7e+02 Score=31.16 Aligned_cols=233 Identities=12% Similarity=0.024 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCC
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP----HEALRIFNLMLEDCNLYPD 263 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~----~~A~~lf~~m~~~~g~~pd 263 (880)
++.......+.++...|..+....+.. +.. .+|...-...+.+++..|+. .++..++..+..+ .|+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~-ll~------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d 104 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIE-LCS------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKS 104 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHH-HHh------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCC
Confidence 455555556666665554322222222 221 14555666666666666653 3566666655322 256
Q ss_pred HHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002795 264 IAAYHSVAVTLGQVGLL-----KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFK 338 (880)
Q Consensus 264 ~~t~~~ll~~~~~~g~~-----~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~ 338 (880)
.......+.+++..+.- ..+...+.... ..++..+-...+.++.+.++ ..+...+-
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~------------------~D~~~~VR~~a~~aLg~~~~-~~ai~~L~ 165 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITA------------------FDKSTNVRFAVAFALSVIND-EAAIPLLI 165 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHh------------------hCCCHHHHHHHHHHHhccCC-HHHHHHHH
Confidence 66655556555554321 12223322222 23344555556666666665 34555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002795 339 QLRKSGLKPSAATYGLAMEVMLQSG-KYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 417 (880)
Q Consensus 339 ~m~~~g~~pd~~t~~~ll~a~~~~g-~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 417 (880)
.+.+ .+|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.++.+.|+ ..|+..+-...+.+.
T Consensus 166 ~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-- 236 (280)
T PRK09687 166 NLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-- 236 (280)
T ss_pred HHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc--
Confidence 5554 234444444555555442 13345555544443 3456666666777777766 345555555554432
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002795 418 TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 465 (880)
Q Consensus 418 ~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~ 465 (880)
.....+.++...|.. +|+..+..+.. ..||..+-...+.+|
T Consensus 237 ---~~~~a~~ALg~ig~~-~a~p~L~~l~~---~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 237 ---VGDLIIEAAGELGDK-TLLPVLDTLLY---KFDDNEIITKAIDKL 277 (280)
T ss_pred ---hHHHHHHHHHhcCCH-hHHHHHHHHHh---hCCChhHHHHHHHHH
Confidence 123456666666664 46666666654 234554444444443
No 303
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.97 E-value=1.7e+02 Score=30.95 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCCCC-----------------HHHHHHHHHHHHHcCChHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVP-SHQWKGVFWVFKQLRKSGLKPS-----------------AATYGLAMEVMLQSGKYDLVHEF 371 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd-----------------~~t~~~ll~a~~~~g~~~~A~~l 371 (880)
+.-|+.-|-+.++.... +-.++++.++....+. +.-|+ ..+++.+...|..+|.+.+|.++
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l 301 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQL 301 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 55666667666655332 2344555555544421 11121 11233344556667777777777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 372 ~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
.+..+..+ +.+...|-.|+..+...|+--.|.+-++.|.
T Consensus 302 ~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 302 HQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 77666654 4566666677777777776555555555543
No 304
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.93 E-value=2.7e+02 Score=33.35 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
++|-.|.|+|++++|.++...... ........+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence 455567788888888888866555 3444555666667777664
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.46 E-value=1.7e+02 Score=30.88 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002795 172 AKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLD 214 (880)
Q Consensus 172 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 214 (880)
.+|+++|..+....- -..+-..++.++....+..+|...+.
T Consensus 150 ~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHH
Confidence 467777777776431 23344556667766666666666554
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.23 E-value=63 Score=34.27 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=79.1
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 002795 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS---GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE 380 (880)
Q Consensus 304 ~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~ 380 (880)
+-|..+.+..+.+-..++..-....+.+.+..++-+++.. -..|+... .++++.|. .-+.++++.++..=+..|+
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGi 131 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGI 131 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhcc
Confidence 3344556677777777777777778889999888888743 12233222 22333333 3456688888888889999
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002795 381 AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 415 (880)
-||-.+++.+|+.+.+.+++.+|..+.-.|.....
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888776543
No 307
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.12 E-value=1.7e+02 Score=30.71 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=110.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHcCChHHHHHHHHHH----HHcCCCccHHHHHH
Q 002795 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATY-------GLAMEVMLQSGKYDLVHEFFRKM----AKSGEAIGALTYKV 389 (880)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-------~~ll~a~~~~g~~~~A~~l~~~m----~~~g~~~d~~~~~~ 389 (880)
.+-.++.+++++|...|.++...|+..+..+. ..+...|...|++..-.++.... ..-.-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 34467789999999999999999987776554 44677788888876554444332 22222233455666
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCCCCHHHHHH
Q 002795 390 LVRAFWEE-GKINEAVAAVRNMEQRGVVGTA-----SVYYELACCLCNNGRWQDAMLVVEKIKSL---RHSKPLEITFTG 460 (880)
Q Consensus 390 Li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~-----~t~~~Li~~~~~~g~~~~A~~l~~~m~~~---~~~~p~~~t~~~ 460 (880)
||..+... ..++..+.+.....+....-.. ..=.-+|..+.+.|++.+|+.+...+... ...+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 66666544 3456666665555432211111 11124677888999999998776654331 344455443222
Q ss_pred HH-HHHHhCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 002795 461 LI-ISSMDGGHIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSRN--DMFSKAKELFEETTR 517 (880)
Q Consensus 461 ll-~a~~~~g~~~~A~~i~~~m~~-----~~~pd~~~~~~Li~~~~~~--g~~~~A~~lf~~m~~ 517 (880)
+= .+|-...++.++..-+...+. -|||-...---|+++...+ .++.-|...|-+..+
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 21 234444444444444433332 1566655555555554333 355666666666554
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=66.83 E-value=22 Score=30.98 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 002795 449 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 496 (880)
Q Consensus 449 ~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li 496 (880)
....|++....+.+.+|-+.+++..|.++|+.++.++.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 445566666666666666666666666666666664443333555444
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.76 E-value=1.2e+02 Score=28.73 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 002795 274 LGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~ 292 (880)
+...|++.+|..+|++...
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3445555555555555544
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=66.36 E-value=14 Score=24.33 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 490 GTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 490 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
..|..+...|.+.|++++|++.|++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45777888999999999999999999884
No 311
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=66.27 E-value=1.5e+02 Score=29.86 Aligned_cols=181 Identities=17% Similarity=0.140 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHhcCCHH
Q 002795 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV--TLGQVGLLK 281 (880)
Q Consensus 204 g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~--~~~~~g~~~ 281 (880)
|-+.-|+-=|...+...| .-+.+||-|.--+...|+++.|.+.|+...+- .|. .-|..+-+ ++--.|++.
T Consensus 79 GL~~LAR~DftQaLai~P----~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~-y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 79 GLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPT-YNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hHHHHHhhhhhhhhhcCC----CcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCc-chHHHhccceeeeecCchH
Confidence 444445555555544433 23457888888888889999999999888773 232 22222222 233458888
Q ss_pred HHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHH
Q 002795 282 ELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF-KQLRKSGLKPSAATYGLAMEVML 360 (880)
Q Consensus 282 ~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~-~~m~~~g~~pd~~t~~~ll~a~~ 360 (880)
-|.+=|...-+... ..|=...|--++. +.-++.+|..-+ ++... .|..-|...|-.+.
T Consensus 151 LAq~d~~~fYQ~D~--------------~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y 209 (297)
T COG4785 151 LAQDDLLAFYQDDP--------------NDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY 209 (297)
T ss_pred hhHHHHHHHHhcCC--------------CChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH
Confidence 88776666655320 2233333433332 233444544322 22222 23333333332221
Q ss_pred HcCChHHHHHHHHHHHHcCC------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002795 361 QSGKYDLVHEFFRKMAKSGE------AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415 (880)
Q Consensus 361 ~~g~~~~A~~l~~~m~~~g~------~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 415 (880)
- |++. .+.+++.+..-.- ..=..||--|..-|...|+.++|..+|+-....++
T Consensus 210 L-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 210 L-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred H-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1 1111 1222333222110 00134666677777788888888888877665543
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=66.10 E-value=77 Score=27.46 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 329 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
|.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-+..+. ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455667777777778888888888888888888888888888888777432 123445655543
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=64.58 E-value=34 Score=29.88 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 331 KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-+..+- ......|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3555666666677777888888888888888888888888887776552 222225555543
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=63.26 E-value=17 Score=25.24 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 489 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
..+++.|...|...|++++|..++++....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457888899999999999999999888763
No 315
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=62.99 E-value=11 Score=25.52 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=22.5
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002795 479 QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK 509 (880)
Q Consensus 479 ~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~ 509 (880)
++..+..|-|...|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344445667888888888888888888875
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=62.28 E-value=18 Score=25.09 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555666666666665555544
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.18 E-value=1.4e+02 Score=29.29 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002795 488 NIGTVNAMLKVYSRND-----------MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 556 (880)
Q Consensus 488 d~~~~~~Li~~~~~~g-----------~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A 556 (880)
...++.++..+|...+ .+++|.+.|++... ..|+..+|+.-+..+. +|
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---------------~~P~ne~Y~ksLe~~~------ka 126 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---------------EDPNNELYRKSLEMAA------KA 126 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---------------H-TT-HHHHHHHHHHH------TH
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---------------cCCCcHHHHHHHHHHH------hh
Confidence 3466666666665433 36677778888777 4599999999888763 47
Q ss_pred HHHHHHHHHCCCCC
Q 002795 557 EYVYKGMALSGCQL 570 (880)
Q Consensus 557 ~~l~~~m~~~g~~p 570 (880)
-+++.++.+++...
T Consensus 127 p~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 127 PELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHhhh
Confidence 77888887776543
No 318
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.63 E-value=1.3e+02 Score=28.33 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCC-HHHHHH
Q 002795 259 NLYPDIA--AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ-WKGVFW 335 (880)
Q Consensus 259 g~~pd~~--t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~-~~~A~~ 335 (880)
+..++.. ..|.++.-....+.+...+.+++.+.......+. ...+..+|++++.+.++..- ---+..
T Consensus 32 ~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~----------~~~~~ssf~~if~SlsnSsSaK~~~~~ 101 (145)
T PF13762_consen 32 NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII----------GWLDNSSFHIIFKSLSNSSSAKLTSLT 101 (145)
T ss_pred ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh----------hhcccchHHHHHHHHccChHHHHHHHH
Confidence 4445543 3577777777778888888877777432211110 23456678899988877666 345778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002795 336 VFKQLRKSGLKPSAATYGLAMEVMLQSG 363 (880)
Q Consensus 336 l~~~m~~~g~~pd~~t~~~ll~a~~~~g 363 (880)
+|..|++.+.+++..-|..+|.++.+-.
T Consensus 102 Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 102 LFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 8888888888889989999998876653
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=60.48 E-value=2.5e+02 Score=30.43 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 347 PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAI---GALTYKVLVRAFWEEGKINEAVAAVRNMEQ 412 (880)
Q Consensus 347 pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~---d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 412 (880)
....++..+...+.+.|.++.|...+..+...+... ...+.-.-.......|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888999999999999998888754211 334444556777888999999998888776
No 320
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.85 E-value=1.9e+02 Score=28.75 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=10.8
Q ss_pred HhcCCCHHHHHHHHHHHHHC
Q 002795 324 CVPSHQWKGVFWVFKQLRKS 343 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~ 343 (880)
+...|+-++|..-|.+....
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 169 LLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHcCchHHHHHHHHHHHHc
Confidence 55555555555555555544
No 321
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=59.23 E-value=24 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 387 YKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 387 ~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
|..+...|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3344444444444444444444433
No 322
>PRK09687 putative lyase; Provisional
Probab=55.88 E-value=2.8e+02 Score=29.46 Aligned_cols=202 Identities=11% Similarity=-0.033 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHcCCCcc
Q 002795 313 DLVVYNAVLNACVPSHQW----KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKY-----DLVHEFFRKMAKSGEAIG 383 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~-----~~A~~l~~~m~~~g~~~d 383 (880)
|...-...+.++.+.|+. .++..++..+... .|+..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444555555555542 3556666655332 34555545555555444321 122222222222 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002795 384 ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG-RWQDAMLVVEKIKSLRHSKPLEITFTGLI 462 (880)
Q Consensus 384 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g-~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 462 (880)
..+-...+.++++.|+ ..|+..+-.+.+. ++..+-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~ 213 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAI 213 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHH
Confidence 5555666777777776 4566666666653 23333344445555442 23345555555543 34556667777
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHH
Q 002795 463 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSS 542 (880)
Q Consensus 463 ~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ 542 (880)
.++.+.++..-.-.+.+.+.. ++ ..-..+.+++..|.. +|+..+..+.... ||...-..
T Consensus 214 ~aLg~~~~~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---------------~d~~v~~~ 272 (280)
T PRK09687 214 IGLALRKDKRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---------------DDNEIITK 272 (280)
T ss_pred HHHHccCChhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---------------CChhHHHH
Confidence 778888875433334444333 23 234677888888885 6888888888743 67776666
Q ss_pred HHHHHH
Q 002795 543 MLEASA 548 (880)
Q Consensus 543 ll~a~~ 548 (880)
.+.+|.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 666554
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.68 E-value=4.5e+02 Score=31.79 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=45.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 002795 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 197 l~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
++.+.+.+.+++|..+.+......++ . .-..++...|..+.-.|++++|-.+.-.|... +..-|--.+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~-~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER-F-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc-c-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcc
Confidence 34555556666666665544222111 0 12345667777777777888877777777764 56666666666655
Q ss_pred cCCHH
Q 002795 277 VGLLK 281 (880)
Q Consensus 277 ~g~~~ 281 (880)
.++..
T Consensus 436 ~~~l~ 440 (846)
T KOG2066|consen 436 LDQLT 440 (846)
T ss_pred ccccc
Confidence 55543
No 324
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.19 E-value=3.3e+02 Score=29.47 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=87.7
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------CCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 164 RLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGD------KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 164 ~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~------~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
.+-.++..++++.+++....++ .|.++.....|.++.. .-+|..-..+|+.+....+.+ +++.|--+ +
T Consensus 265 ~lW~r~lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP----vV~LNRAV-A 338 (415)
T COG4941 265 SLWDRALIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP----VVTLNRAV-A 338 (415)
T ss_pred hhhhHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC----eEeehHHH-H
Confidence 3444566788999999988888 4899999888887743 346888888888776655421 23444443 4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
.++..-++.++.+.+-+..++++.--...+..-...+.+.|+.++|...|++....
T Consensus 339 la~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 339 LAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 45556688888888888776333333334445566788999999999999998874
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=52.79 E-value=75 Score=31.99 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 159 ~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
+.-+..|.+.+...+|+...+.-.+.. +-+...-..+++.||-.|+|++|..-++.+-...+. ..+-...|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~-~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ-DTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc-cchHHHHHHHHHH
Confidence 444566777777888887777776665 556666777778888888888887777665443322 2233445555554
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.00 E-value=3.2e+02 Score=28.99 Aligned_cols=58 Identities=14% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVH 369 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~ 369 (880)
++..+-..+|..++..++|..-.+++...... +..-|...|...|......|+..-..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 34444445555555555555555555544433 33334555555555555555543333
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.14 E-value=1.6e+02 Score=29.36 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 401 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR--HSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 401 ~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~--~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
+.|.+.|-.+...+..-++.....|..-|. ..+.+.+..++.+..... +..+|+..+.+|.+.+.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444434443333333222 344444444444443311 1133444444444444444444443
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=50.78 E-value=40 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 002795 389 VLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 389 ~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
.+...|...|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444444444444444444433
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=50.60 E-value=28 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 490 GTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 490 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35777888889999999999999988773
No 330
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.08 E-value=4.2e+02 Score=29.79 Aligned_cols=346 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 232 ~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
|-++.-|...|+..+|.+..+++.. +......+-+++...+.-..|..+.-.+...+ ..
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v------sffhhe~vkralv~ame~~~ae~l~l~llke~---------------~e 276 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV------SFFHHEGVKRALVDAMEDALAEGLTLKLLKEG---------------RE 276 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC------CchhhHHHHHHHHHHHhhhhcccceeccchhh---------------hh
Q ss_pred CCHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcc
Q 002795 312 PDLVVYNAVLNACVPSH--------QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG 383 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d 383 (880)
-+..+-+-+..++.+.+ +...|...|+...-..+.-+-..-+++-..-...|+.+...++
T Consensus 277 ~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~F------------ 344 (645)
T KOG0403|consen 277 EGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAF------------ 344 (645)
T ss_pred hcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHH------------
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002795 384 ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 463 (880)
Q Consensus 384 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~ 463 (880)
......+|+-|...|+..+..+.++++-.....|-...+..-+..=.++..-+.|-.++..+. ..+-+....-+....
T Consensus 345 kk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~--~e~fsteDv~~~F~m 422 (645)
T KOG0403|consen 345 KKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLH--GEVFSTEDVEKGFDM 422 (645)
T ss_pred HHhhHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhh--cccCCHHHHHHHHHH
Q ss_pred HHHhCCC---------HHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCC
Q 002795 464 SSMDGGH---------IDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 532 (880)
Q Consensus 464 a~~~~g~---------~~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~ 532 (880)
.+-...+ -+.|.-+-+....+ .+.+...+..-+..-......-+--..+-.|...|......-.+++.+
T Consensus 423 LLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g 502 (645)
T KOG0403|consen 423 LLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGG 502 (645)
T ss_pred HHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCc
Q ss_pred CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002795 533 LKPDEY--TYSSMLEASATAHQWEYFEYVYKGMALSGCQLD--QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608 (880)
Q Consensus 533 ~~Pd~~--t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd--~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~ 608 (880)
...+.. -...|+.-|...|+..+|.+..+++ |++.- ..++-+++.+.-+.|+-...+.+++..-..|+.
T Consensus 503 ~sVed~kdkI~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI---- 575 (645)
T KOG0403|consen 503 WSVEDAKDKIDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI---- 575 (645)
T ss_pred chHHHHHHHHHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----
Q ss_pred HHHHHHHHHHH
Q 002795 609 FFTEMLIQAIV 619 (880)
Q Consensus 609 ~~~~ll~~~~~ 619 (880)
|-+.|-.+|-+
T Consensus 576 T~nQMtkGf~R 586 (645)
T KOG0403|consen 576 TTNQMTKGFER 586 (645)
T ss_pred eHHHhhhhhhh
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.56 E-value=5.9e+02 Score=31.36 Aligned_cols=227 Identities=10% Similarity=0.036 Sum_probs=120.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH---HHHHHHHHH-HhcCCCHHHHHHHHHHHHHC----CC
Q 002795 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL---VVYNAVLNA-CVPSHQWKGVFWVFKQLRKS----GL 345 (880)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~---~ty~~ll~~-~~~~g~~~~A~~l~~~m~~~----g~ 345 (880)
.....++++|..+..++...-. .++..+.. ..|+++-.. ....|+++.|.++-+..... -.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-----------~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-----------APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-----------cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3456889999999888765420 00011222 245554433 45578999999888877643 22
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHH---HHH--HHHHhcCCH--HHHHHHHHHHHHC-----
Q 002795 346 KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYK---VLV--RAFWEEGKI--NEAVAAVRNMEQR----- 413 (880)
Q Consensus 346 ~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~---~Li--~~~~~~g~~--~~A~~~~~~m~~~----- 413 (880)
.+....+..+..+..-.|++++|..+..+..+..-..++..+. .+. ..+...|.. .+....|......
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3355666777777888899999999888776653233333332 222 234455632 2333333333222
Q ss_pred CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCCH--HH--HHHHHHHHHhCCCHHHHHHHHHHHhhC-CC
Q 002795 414 GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-HSKPLE--IT--FTGLIISSMDGGHIDDCISIFQHMKDH-CE 486 (880)
Q Consensus 414 g~-~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~~p~~--~t--~~~ll~a~~~~g~~~~A~~i~~~m~~~-~~ 486 (880)
.. .+-..++..+..++.+ .+.+..-...-.... ...|.. .. +..|...+.-.|+++.|.....++... ..
T Consensus 574 ~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred ccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 11 0112334444545444 333332222221111 112222 22 235667778899999999999998873 11
Q ss_pred --CC--HHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 002795 487 --PN--IGTVNAMLKV--YSRNDMFSKAKELFEE 514 (880)
Q Consensus 487 --pd--~~~~~~Li~~--~~~~g~~~~A~~lf~~ 514 (880)
+. -.+-...+.. ....|+...+.....+
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22 2222222222 2346888877776665
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.01 E-value=1e+02 Score=31.02 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 232 ~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~ 292 (880)
+.-++.+.+.+++.+|+.+..+-.+. -+.|..+...++..||-.|++++|..-++-..+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34455666777778887777666553 334566677777778888888888776666554
No 333
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.46 E-value=4.2e+02 Score=28.75 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc---CCHHHH
Q 002795 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA---GRPHEA 247 (880)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~---g~~~~A 247 (880)
.+.-+.+|+...+.. +.+.......++.+.+..+.+...+.++.++...+ .+...|...|...... -.+...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~----~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP----GSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHhccCcHHHH
Confidence 455677888888775 67888889999999999999999999999987654 4678888888866552 346677
Q ss_pred HHHHHHHHHcC-----CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002795 248 LRIFNLMLEDC-----NL------YPD-----IAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (880)
Q Consensus 248 ~~lf~~m~~~~-----g~------~pd-----~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g 294 (880)
..+|.+..+.. +. .++ ...+.-+...+.++|..+.|..+++.+.+..
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 76666654420 11 011 1123334444567899999999999988864
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=46.32 E-value=79 Score=33.87 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=20.7
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCI 475 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~a~~~~g~~~~A~ 475 (880)
|.++|++++|+..|..-.. ..| +.+++..-..+|.+...+..|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 4455555555555554433 223 4444444444555544444333
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=45.86 E-value=5.2e+02 Score=29.69 Aligned_cols=166 Identities=9% Similarity=0.026 Sum_probs=99.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 002795 381 AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTG 460 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 460 (880)
+.|-...-+++..++.+-...-+..+-.+|..-|- +...|..++.+|..+ ..+.-..+++++.+ ..-+...+..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve---~dfnDvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVE---YDFNDVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHH---hcchhHHHHH
Confidence 34555666777777777777777777777776653 344566777777777 44556677777665 3334444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC
Q 002795 461 LIISSMDGGHIDDCISIFQHMKDHCEP------NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK 534 (880)
Q Consensus 461 ll~a~~~~g~~~~A~~i~~~m~~~~~p------d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~ 534 (880)
-+..+...++...+..+|......+-| -...|.-|+..- ..+.+..+.+..++.... +..
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~l------------g~~ 202 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKL------------GEG 202 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhh------------ccc
Confidence 443333447777777777776654222 123455554322 245666666666665543 233
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 535 PDEYTYSSMLEASATAHQWEYFEYVYKGMALS 566 (880)
Q Consensus 535 Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~ 566 (880)
.-.+.+.-+..-|....++.+|.+++..+.++
T Consensus 203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 203 RGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred hHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 44555666666677777777777777766654
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.83 E-value=2.2e+02 Score=25.01 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 232 ~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
|++...+...+..+++..+.+.+. +.+.|++++|..+.+.+ ..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIRlsS------------------LmNrG~Yq~Al~l~~~~-------------------~~ 67 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIRLSS------------------LMNRGDYQSALQLGNKL-------------------CY 67 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHH------------------HHccchHHHHHHhcCCC-------------------CC
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 357 (880)
||...|-+|-.. +.|-.+....-+..|...| .|....|..=++
T Consensus 68 pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faag~r 110 (115)
T TIGR02508 68 PDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVAGMR 110 (115)
T ss_pred chHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHHHHH
No 337
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.43 E-value=64 Score=23.87 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 002795 614 LIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 651 (880)
Q Consensus 614 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a 651 (880)
+....+.|-..++..++++|...|+..+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33444556666677777777777777777766666543
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=44.35 E-value=41 Score=21.77 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 493 NAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 493 ~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
-.+..+|.+.|++++|.+.|++++..-
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 345667778899999999999988853
No 339
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.29 E-value=3.1e+02 Score=30.75 Aligned_cols=210 Identities=9% Similarity=0.009 Sum_probs=98.8
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCC
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKPSAAT--YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL--TYKVLVRAFWEEGK 399 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~--~~~~Li~~~~~~g~ 399 (880)
.+..|+.+- ++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 344566644 444445677665432 234566667778765 444455666544432 11234555667788
Q ss_pred HHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHHhCCCHHH
Q 002795 400 INEAVAAVRNMEQRGVVGT----ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT--FTGLIISSMDGGHIDD 473 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~----~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t--~~~ll~a~~~~g~~~~ 473 (880)
.+.+..+++. |...+ ....+ .+...+..|+.+-+ +.+.+ .|..|+... -.+.+...+..|+.+-
T Consensus 81 ~~~v~~Ll~~----~~~~~~~~~~~g~t-pL~~A~~~~~~~iv----~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 81 VKAVEELLDL----GKFADDVFYKDGMT-PLHLATILKKLDIM----KLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred HHHHHHHHHc----CCcccccccCCCCC-HHHHHHHhCCHHHH----HHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 8776655543 22111 01112 22334456665433 33333 344443221 1233444556777776
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHH---HHHHHHHHHHc
Q 002795 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT---YSSMLEASATA 550 (880)
Q Consensus 474 A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t---~~~ll~a~~~~ 550 (880)
+..+++.-..-...|..-++. +...+..|+.+- .+.+.+.| ..|+... ..+++...+..
T Consensus 151 v~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~ei----v~~Ll~~g-------------a~~n~~~~~~~~t~l~~A~~~ 212 (413)
T PHA02875 151 IELLIDHKACLDIEDCCGCTP-LIIAMAKGDIAI----CKMLLDSG-------------ANIDYFGKNGCVAALCYAIEN 212 (413)
T ss_pred HHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHhCC-------------CCCCcCCCCCCchHHHHHHHc
Confidence 666655432211122222223 333445566543 34445555 3333221 12344434455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH
Q 002795 551 HQWEYFEYVYKGMALSGCQLDQT 573 (880)
Q Consensus 551 ~~~~~A~~l~~~m~~~g~~pd~~ 573 (880)
++.+ +.+.+.+.|..++..
T Consensus 213 ~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 213 NKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred CCHH----HHHHHHHCCcCcchH
Confidence 6654 444556677777643
No 340
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.64 E-value=3.8e+02 Score=27.51 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCccHHHHHHH---H-HHHH--hcCCHHHHHHHHHHHHHCCC
Q 002795 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL---V-RAFW--EEGKINEAVAAVRNMEQRGV 415 (880)
Q Consensus 359 ~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L---i-~~~~--~~g~~~~A~~~~~~m~~~g~ 415 (880)
-+..+++.+|..+|+++....+..+..-|.+- + .++| -..+.-.+...+++..+..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 35677888888888888776554443333321 0 1111 12444455555555555443
No 341
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=43.07 E-value=9.4 Score=35.75 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=26.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002795 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFR 373 (880)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~ 373 (880)
+..+.+.+.......+++.+...+..-+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555544433445555555555555555444444443
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=42.64 E-value=41 Score=21.74 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
.+..++.+.|++++|.+.|+++.++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666677777777777777664
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.03 E-value=4.3e+02 Score=27.60 Aligned_cols=256 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK 281 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~ 281 (880)
+...+++|+.-|+.++...+......-.+...++..+.+.|++++....+.+|..- +.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY----------------------Ik 96 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY----------------------IK 96 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH----------------------HH
Q ss_pred HHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 002795 282 ELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR-----KSGLKPSAATYGLAM 356 (880)
Q Consensus 282 ~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t~~~ll 356 (880)
.|.. -.-+.-+.|+++..-..+.+.+--..+|+.-. ..+-..=-.|-+.+.
T Consensus 97 SAVT------------------------rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLg 152 (440)
T KOG1464|consen 97 SAVT------------------------RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLG 152 (440)
T ss_pred HHHh------------------------ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHh
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002795 357 EVMLQSGKYDLVHEFFRKMAKSGEAIG-----------ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 425 (880)
Q Consensus 357 ~a~~~~g~~~~A~~l~~~m~~~g~~~d-----------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~L 425 (880)
..|...+.+....+++.++...--.-| ..+|..=|.+|....+-..-..+|++...-.-.......-.+
T Consensus 153 kl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv 232 (440)
T KOG1464|consen 153 KLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV 232 (440)
T ss_pred hhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH
Q ss_pred HHHHH-----hCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC---CCCCHHHHHHHHH
Q 002795 426 ACCLC-----NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH---CEPNIGTVNAMLK 497 (880)
Q Consensus 426 i~~~~-----~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~---~~pd~~~~~~Li~ 497 (880)
|+-|. +.|++++|-.-|-+..+...-..+..--++|--.....-.+.....-|+.-... ..|.+...+.|+.
T Consensus 233 IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~ 312 (440)
T KOG1464|consen 233 IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVA 312 (440)
T ss_pred HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHH
Q ss_pred HHHhcC
Q 002795 498 VYSRND 503 (880)
Q Consensus 498 ~~~~~g 503 (880)
+|-.+.
T Consensus 313 aYQ~Nd 318 (440)
T KOG1464|consen 313 AYQNND 318 (440)
T ss_pred HHhccc
No 344
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=41.64 E-value=4.8e+02 Score=28.15 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 002795 572 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP---HPLFFTEMLIQAIVQSNYEKAVALINAMAY 635 (880)
Q Consensus 572 ~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 635 (880)
..++..+...+.+.|.++.|...+..+...+... .+.....-...+...|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666777777777777777766532111 222333345555556777777777666553
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=41.52 E-value=34 Score=21.37 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=8.7
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 002795 233 KLLAILGKAGRPHEALRIF 251 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf 251 (880)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3344444444444444443
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=40.80 E-value=70 Score=20.92 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 387 YKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 387 ~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
|..+...|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555554443
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.80 E-value=6.7e+02 Score=29.56 Aligned_cols=185 Identities=13% Similarity=0.086 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHH
Q 002795 244 PHEALRIFNLMLEDCNLYPDIAAYHSVA----VT-LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318 (880)
Q Consensus 244 ~~~A~~lf~~m~~~~g~~pd~~t~~~ll----~~-~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~ 318 (880)
...|.+.++.....+ +...-..+. .+ +....+.+.|...|..+...- .+.- ..-+....+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~--------~~~a---~~~~~~a~~ 292 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESF--------KKAA---TKGLPPAQY 292 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH--------HHHH---hhcCCcccc
Confidence 467888888887762 333322222 22 456688999999999887610 0000 011223444
Q ss_pred HHHHHHhcCC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 319 AVLNACVPSH-----QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ-SGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 319 ~ll~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
-+-.+|.+.. +...|+.+|...-..|. |+...+-..+.-... -.++..|.++|....+.|.. ....+.+++.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y 370 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCY 370 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence 5555555532 67789999999888874 565544333332222 24578999999999998843 2333333332
Q ss_pred HHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 393 AFW--EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 393 ~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
... -..+...|..++.+.-++|......... .+..+.. ++++.+.-.+..+..
T Consensus 371 ~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~-~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 371 ELGLGVERNLELAFAYYKKAAEKGNPSAAYLLG-AFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HhCCCcCCCHHHHHHHHHHHHHccChhhHHHHH-HHHHHcc-ccccHHHHHHHHHHH
Confidence 222 2346888999999999888332222222 2222333 666666666655554
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=40.06 E-value=2.6e+02 Score=26.32 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCC
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ-WEYFEYVYKGMALSGCQ 569 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~-~~~A~~l~~~m~~~g~~ 569 (880)
..|+++.-.+..+.+.-.+.+++.+.......+ --..+..+|.+++.+.+.... ---+..+|..|.+.+.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~--------~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~ 112 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNI--------IGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIE 112 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHH--------hhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 345555555555666655555555533210000 002355678899998877765 56677888888888888
Q ss_pred CCHHHHHHHHHHHHHc
Q 002795 570 LDQTKHAWLLVEASRA 585 (880)
Q Consensus 570 pd~~~~~~ll~~~~~~ 585 (880)
+++.-|..+|.++.+.
T Consensus 113 ~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 113 FTPSDYSCLIKAALRG 128 (145)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 8998899888877543
No 349
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.00 E-value=7.7e+02 Score=29.73 Aligned_cols=118 Identities=6% Similarity=-0.014 Sum_probs=71.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002795 397 EGKINEAVAAVRNMEQRGVVG-TA--SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 473 (880)
Q Consensus 397 ~g~~~~A~~~~~~m~~~g~~p-~~--~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~ 473 (880)
..+.+.|..++........-+ .. .++..+.......+...+|...+..... ...+......-+......++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 345688888888775544222 11 2344444444444335566666665432 12233344444555557889998
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 474 A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
+...+..|.....-...-.-=+..++...|+.++|...|+....
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888764333444444566776778999999999998754
No 350
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.96 E-value=1.7e+02 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=13.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 002795 234 LLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 234 Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444555666666666666544
No 351
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.66 E-value=2.2e+02 Score=24.20 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002795 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALR 249 (880)
Q Consensus 173 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~ 249 (880)
.+-+++..+.+.|+ .+......+-.+-...|+.+.|++++..+. .++ -.|...+.++-..|.-.-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~-------~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE-------GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC-------cHHHHHHHHHHHcCchhhhhc
Confidence 34577888888884 677777777666667799999999999885 432 368889999888887665543
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=38.02 E-value=90 Score=25.95 Aligned_cols=48 Identities=10% Similarity=-0.037 Sum_probs=33.7
Q ss_pred hccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhh
Q 002795 654 DRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSS 702 (880)
Q Consensus 654 ~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~ 702 (880)
+....+.|+..+....+.-..| .--+..+..++.+++..|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777766653 34666777788888888888888654
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.88 E-value=3.6e+02 Score=28.48 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh-
Q 002795 542 SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ- 620 (880)
Q Consensus 542 ~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~- 620 (880)
.=|++++..++|.+++...-+--+.--+....+...-|-.|++.|....+.++-..=....-+-+...|..+...|..+
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3477888999999987765443322112223444455557899999998888877555433233444577777766664
Q ss_pred ----CCHHHHHHHH
Q 002795 621 ----SNYEKAVALI 630 (880)
Q Consensus 621 ----g~~~~A~~l~ 630 (880)
|.+++|.+++
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 8999999988
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=37.43 E-value=2.5e+02 Score=27.48 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 002795 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG----R-------PHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274 (880)
Q Consensus 206 ~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g----~-------~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~ 274 (880)
+++|..-|+.++...| ....++..+..+|...+ + +++|...|+.... ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P----~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINP----NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 4556666666666554 23456666666665543 2 4556666666665 479999999888776
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 002795 275 GQVGLLKELVKLIERMRQKP 294 (880)
Q Consensus 275 ~~~g~~~~A~~l~~~m~~~g 294 (880)
. +|-+++.++.+.+
T Consensus 124 ~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 A------KAPELHMEIHKQG 137 (186)
T ss_dssp H------THHHHHHHHHHSS
T ss_pred H------hhHHHHHHHHHHH
Confidence 3 4667777776654
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.25 E-value=3.2e+02 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=15.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 002795 496 LKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 496 i~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
..+|.+...+++|++=|..+...
T Consensus 175 Aeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh
Confidence 34566666777777777777763
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.06 E-value=1.8e+02 Score=26.64 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 002795 442 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 496 (880)
Q Consensus 442 ~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li 496 (880)
++.+.. ..+.|+....-..+.+|-+-+++..|.++|+-++.++.+.-..|-.++
T Consensus 72 lN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 72 LNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 333433 456677777777777777777777777777777765545444444443
No 357
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=36.04 E-value=2.1e+02 Score=30.80 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=58.2
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHH
Q 002795 464 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM 543 (880)
Q Consensus 464 a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~l 543 (880)
-|.+.|.+++|+..|.......+-|.+++..-..+|.+..++..|..=....+..+ +.-...|+.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------------~~Y~KAYSRR 171 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------------KLYVKAYSRR 171 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------------HHHHHHHHHH
Confidence 47788888888888887776555588888888888888888887776666655532 1112234443
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002795 544 LEASATAHQWEYFEYVYKGMALSGCQLD 571 (880)
Q Consensus 544 l~a~~~~~~~~~A~~l~~~m~~~g~~pd 571 (880)
..+-...|...+|.+=++..+. +.|+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHh--hCcc
Confidence 3343344555555555555443 4555
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.78 E-value=8e+02 Score=28.95 Aligned_cols=50 Identities=4% Similarity=-0.081 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcC
Q 002795 470 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYS--RNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 470 ~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~--~~g~~~~A~~lf~~m~~~g 519 (880)
+...|..+|...-....+...-+-+++.... ...+...|..++.+....|
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 4455556555555422222222222221111 1234555666665555543
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=35.67 E-value=9.3e+02 Score=29.72 Aligned_cols=229 Identities=12% Similarity=0.002 Sum_probs=124.6
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHHcCChHHHHHHHHHHHHc----CCCccHHHHHHHHH
Q 002795 325 VPSHQWKGVFWVFKQLRKSGLKPSA-------ATYGLAMEV-MLQSGKYDLVHEFFRKMAKS----GEAIGALTYKVLVR 392 (880)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a-~~~~g~~~~A~~l~~~m~~~----g~~~d~~~~~~Li~ 392 (880)
....++.+|..++.++...=..|+. ..++.+-.. ....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3468899999998888643222221 123332222 24568888888888776654 23345777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HHHhCCC--HHHHHHHHHHHHhcC-CCC----CCHHHHHH
Q 002795 393 AFWEEGKINEAVAAVRNMEQRGVVGTASV---YYELAC--CLCNNGR--WQDAMLVVEKIKSLR-HSK----PLEITFTG 460 (880)
Q Consensus 393 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~Li~--~~~~~g~--~~~A~~l~~~m~~~~-~~~----p~~~t~~~ 460 (880)
+..-.|++++|..+..+..+..-.-+... |..+.. .+...|+ +.+....|....... .-. +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88899999999998887765532223322 322222 2345663 333344444433311 111 12234556
Q ss_pred HHHHHHhC-CCHHHHHHHHHHHhhCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC
Q 002795 461 LIISSMDG-GHIDDCISIFQHMKDHCEPNIGTV---NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD 536 (880)
Q Consensus 461 ll~a~~~~-g~~~~A~~i~~~m~~~~~pd~~~~---~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd 536 (880)
++.++.+. +...++..-+.......+-....+ ..|+..+...|+.++|...+.++..... .....++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~---------~~~~~~~ 656 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL---------NGQYHVD 656 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCch
Confidence 66666552 222222222322222211122222 3567778889999999999999887541 0112233
Q ss_pred HHHHHHHHHHH--HHcCCHHHHHHHHHH
Q 002795 537 EYTYSSMLEAS--ATAHQWEYFEYVYKG 562 (880)
Q Consensus 537 ~~t~~~ll~a~--~~~~~~~~A~~l~~~ 562 (880)
-.+-...+..- ...|+...+.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 33333333332 234777777766654
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=35.50 E-value=64 Score=23.48 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRG 414 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g 414 (880)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5677888888888888888877544
No 361
>PRK10941 hypothetical protein; Provisional
Probab=35.43 E-value=3.9e+02 Score=28.15 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
.+.+-.+|.+.++++.|+++.+.++...| .++.-+---.-.|.+.|.+..|..-++...+.+.-.|+.......+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P----~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP----EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 34556677888899999999988887665 45566666666788889999998888888776555556555555554
Q ss_pred HH
Q 002795 273 TL 274 (880)
Q Consensus 273 ~~ 274 (880)
..
T Consensus 260 ~l 261 (269)
T PRK10941 260 SI 261 (269)
T ss_pred HH
Confidence 44
No 362
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.89 E-value=6.5e+02 Score=27.63 Aligned_cols=135 Identities=10% Similarity=0.173 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC--HH
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--IA 265 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd--~~ 265 (880)
|++.+...++.-|....+.++-+.+-..+. .+.+.+-.++.+.+.+...+++..+........+. ..
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~-----------~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~ 141 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFF-----------PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTS 141 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHH-----------HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhh
Confidence 666777777777766666444443333221 24566666666666665544444443332111111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHH--HhcCCCHHHHHHHHHHHHH
Q 002795 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA--CVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 266 t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~--~~~~g~~~~A~~l~~~m~~ 342 (880)
....++..+.+.+++..++..++.-.-. .... +...+|..+..-.+-.+ |....+++.|+.+|....-
T Consensus 142 ~H~~l~~~~L~ak~y~~~~p~ld~dive-------i~~~--n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 142 IHADLLQLCLEAKDYASVLPYLDDDIVE-------ICKA--NPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred hHHHHHHHHHHhhcccccCCccchhHHH-------Hhcc--CCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 3344556666777776665544432110 0000 11133333332222222 5667899999999988874
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.50 E-value=5.4e+02 Score=26.29 Aligned_cols=105 Identities=14% Similarity=0.062 Sum_probs=64.3
Q ss_pred HHHHHHHHHH--cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 157 AIRVLVDRLS--EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 157 ~~~~li~~l~--~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
.+...++++. .++++++|++.+-. ..+.|+ --..++.++...|+.+.|+.++..+ .+...+......+
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~-----~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPW--FPDKILQALLRRGDPKLALRYLRAV-----GPPLSSPEALTLY 147 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhc-----CCCCCCHHHHHHH
Confidence 4555565544 45667777766622 222222 2235888888889999999999865 3333444455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
+.. ..++.+.+|..+-+..... . ....+..++..+..
T Consensus 148 ~~~-La~~~v~EAf~~~R~~~~~--~--~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 148 FVA-LANGLVTEAFSFQRSYPDE--L--RRRLFEQLLEHCLE 184 (226)
T ss_pred HHH-HHcCCHHHHHHHHHhCchh--h--hHHHHHHHHHHHHH
Confidence 555 6678999998877766552 1 13456666665553
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.06 E-value=1e+02 Score=22.36 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=13.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
+..+|...|+.+.|+.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 365
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.97 E-value=1.9e+02 Score=33.89 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCH
Q 002795 424 ELACCLCNNGRWQDAMLVVEKIKSL-RHSKPLEITFTGLIISSMDGGHI 471 (880)
Q Consensus 424 ~Li~~~~~~g~~~~A~~l~~~m~~~-~~~~p~~~t~~~ll~a~~~~g~~ 471 (880)
+|..+|..+|++..+..+++..... .|.+.-...+|..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555566666666665555555431 11111223345555555555543
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.94 E-value=5.6e+02 Score=26.35 Aligned_cols=21 Identities=0% Similarity=0.045 Sum_probs=12.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCC
Q 002795 583 SRAGKCHLLEHAFDSLLEAGE 603 (880)
Q Consensus 583 ~~~G~~~~A~~~~~~m~~~g~ 603 (880)
+..|.+..|.++|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 355666666777666655443
No 367
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=32.43 E-value=34 Score=24.89 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=22.4
Q ss_pred hHHHHHHHhcCCCCChHHHHHhhHHHHHHHHHHHH
Q 002795 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQA 36 (880)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (880)
++|++.|.+.|.+|.| |..+=|+-. .|++++..
T Consensus 9 ~eL~~~L~~~G~~~gP-It~sTR~vy-~kkL~~~~ 41 (44)
T smart00540 9 AELRAELKQYGLPPGP-ITDTTRKLY-EKKLRKLR 41 (44)
T ss_pred HHHHHHHHHcCCCCCC-cCcchHHHH-HHHHHHHH
Confidence 4799999999999987 445555543 34454443
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.20 E-value=4.1e+02 Score=28.00 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
...=|++++..++|.++....-.-+. ....--..+...-|-.|.|.|.+..+.++-..-.+. .-.-+...|.+++.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq---~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaE 161 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQ---VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAE 161 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhc---CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHH
Confidence 34457888888888876665443332 212223455666666789999999999888887765 22233445777666
Q ss_pred HHHh-----cCCHHHHHHHH
Q 002795 273 TLGQ-----VGLLKELVKLI 287 (880)
Q Consensus 273 ~~~~-----~g~~~~A~~l~ 287 (880)
.|.. .|.+++|.++.
T Consensus 162 LyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 162 LYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhccccHHHHHHHH
Confidence 6554 59999998877
No 369
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.19 E-value=9.1e+02 Score=28.55 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 454 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 454 ~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
+.....-++..|.+.|..+.|..+.+.+-...- ...-|..-+..+.++|+...+..+-+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~-~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL-KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556666677777777777777766544211 123455666667777777666666555554
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=32.18 E-value=1.2e+02 Score=25.22 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=6.9
Q ss_pred HHHHHHHhCCCHHHHH
Q 002795 424 ELACCLCNNGRWQDAM 439 (880)
Q Consensus 424 ~Li~~~~~~g~~~~A~ 439 (880)
.|+.+|+..|++.+++
T Consensus 48 ~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 48 YLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.08 E-value=1.1e+03 Score=29.44 Aligned_cols=251 Identities=9% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCccHHHHHH--
Q 002795 317 YNAVLNACVPSHQWKGVFWVFKQLRK---SGLKPSAATYGLAMEVMLQSGKY--DLVHEFFRKMAKSGEAIGALTYKV-- 389 (880)
Q Consensus 317 y~~ll~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~~~ll~a~~~~g~~--~~A~~l~~~m~~~g~~~d~~~~~~-- 389 (880)
|..|+..|...|+.++|++++.+... ..-.--..-+--++.-+.+.+.. +..+++-+...+........+++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 002795 390 ----------LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 459 (880)
Q Consensus 390 ----------Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~ 459 (880)
.+-.|......+-++.+++.+....-.++....+.++..|+..=.. ..-....|...-..+|.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~-------~~~~~~kg~e~~E~~~r 659 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE-------QASTDGKGEEAPETTVR 659 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh-------ccCchhccccchhhhHH
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHH
Q 002795 460 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT 539 (880)
Q Consensus 460 ~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t 539 (880)
..+..+....+.=....+++.... -...-..+++-+ +.|+-++|+.++-..+.
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~~~~---~~l~ee~aill~--rl~khe~aL~Iyv~~L~---------------------- 712 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLERLNG---DELYEERAILLG--RLGKHEEALHIYVHELD---------------------- 712 (877)
T ss_pred HHHHHHhhhhcccCcchhhhhccc---hhHHHHHHHHHh--hhhhHHHHHHHHHHHhc----------------------
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002795 540 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA--GKCHLLEHAFDSLLEAGEIPHPLFFTEML 614 (880)
Q Consensus 540 ~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~--G~~~~A~~~~~~m~~~g~~p~~~~~~~ll 614 (880)
+++.|..+....-+ ...++...|..++..|... +--.....+.+-+...+-.-|..-+-.++
T Consensus 713 ------------d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~L 776 (877)
T KOG2063|consen 713 ------------DIDAAESYCLPQYE-SDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLL 776 (877)
T ss_pred ------------chhHHHHHHHHhcc-CCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhC
No 372
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.04 E-value=1.3e+02 Score=22.20 Aligned_cols=38 Identities=11% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 162 VDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKG 199 (880)
Q Consensus 162 i~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~ 199 (880)
+....+.|...++..+++.|.+.|+..+...+..+++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33445678888888899999999988888888877764
No 373
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=31.99 E-value=5.6e+02 Score=26.03 Aligned_cols=187 Identities=10% Similarity=-0.002 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002795 363 GKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 442 (880)
Q Consensus 363 g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~ 442 (880)
|-...|+-=|.+..... +.-+.+||-|.--+...|+++.|.+.|+...+.++.-+-...|.-| ++--.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 33444444444444432 2236688888888889999999999999998877654433333222 233568888887777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002795 443 EKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSG 522 (880)
Q Consensus 443 ~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~ 522 (880)
-..-......|-...|.-+. ...-++.+|..-+.+--++ .|..-|...|-.|.- |++. ...+|+++......
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~- 228 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATD- 228 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccc-
Confidence 66655333334333333333 2234455555433332222 354555555544433 2221 12334444331100
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 523 YTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 565 (880)
Q Consensus 523 ~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~ 565 (880)
...--..=..||--+..-+...|+.++|..+|+-.+.
T Consensus 229 ------n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 229 ------NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred ------hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 0000000123555566666666777777766665543
No 374
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.84 E-value=5.7e+02 Score=26.09 Aligned_cols=106 Identities=13% Similarity=0.218 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002795 386 TYKVLVRAFWEE--GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 463 (880)
Q Consensus 386 ~~~~Li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~ 463 (880)
.|...+.+++-. +++++|++.+- ...+.|+-.. .++.++...|+.+.|+.+++.+.. ...+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 455666776654 56667776662 2233333222 377778888898988888877543 2222333333344
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 002795 464 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN 502 (880)
Q Consensus 464 a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~ 502 (880)
. ..++.+.+|..+-+...+.. ....+..++..+...
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCLEE 185 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHHHH
Confidence 4 55688888888777665521 134566666666543
No 375
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.71 E-value=5.3e+02 Score=25.70 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=51.7
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKPSAATYGL-----AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEG 398 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-----ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g 398 (880)
++..+++++|...++..... |....+.. |.+.....|.++.|..+++.....+. .......-.+.+...|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 66777777777777766542 22222332 33445666777777777776665542 1222333445667777
Q ss_pred CHHHHHHHHHHHHHCC
Q 002795 399 KINEAVAAVRNMEQRG 414 (880)
Q Consensus 399 ~~~~A~~~~~~m~~~g 414 (880)
+-++|..-|......+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777777665
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.36 E-value=2.9e+02 Score=25.33 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002795 331 KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
-+..+.++.+....+.|+....-..+++|.+.+++..|.++|+-++.+
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 355666777777788888888888888888888888888888877654
No 377
>PRK10941 hypothetical protein; Provisional
Probab=31.15 E-value=4.8e+02 Score=27.52 Aligned_cols=79 Identities=9% Similarity=-0.098 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
..+.+-.++.+.++++.|+.+.+.+.... +.++.-+---.-.|.+.|.+..|..=++..++.-|. .|+...-...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~--dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE--DPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--chhHHHHHHHHH
Confidence 44566677889999999999999999877 667777776777899999999999999998876553 355554444444
Q ss_pred HH
Q 002795 237 IL 238 (880)
Q Consensus 237 ~~ 238 (880)
.+
T Consensus 260 ~l 261 (269)
T PRK10941 260 SI 261 (269)
T ss_pred HH
Confidence 43
No 378
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.15 E-value=2.9e+02 Score=32.49 Aligned_cols=93 Identities=11% Similarity=0.047 Sum_probs=58.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCCHHHHH
Q 002795 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH------EALRIFNLMLEDCNLYPDIAAYH 268 (880)
Q Consensus 195 ~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~------~A~~lf~~m~~~~g~~pd~~t~~ 268 (880)
+|+.+|...|++..+.++++..+... ++...=...+|..|+-+.+.|.++ .|.++++.. .+.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHH
Confidence 78899999999999999998876543 333334456888888888888764 344444443 3456788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 002795 269 SVAVTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 269 ~ll~~~~~~g~~~~A~~l~~~m~~ 292 (880)
.|+.+-..--.-.-.+-++.++..
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 877665443222233334444433
No 379
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=30.89 E-value=6.7e+02 Score=26.63 Aligned_cols=115 Identities=7% Similarity=0.033 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-C-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 398 GKINEAVAAVRNMEQ-RGVVGTASVYYELACCLCN-N-GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 398 g~~~~A~~~~~~m~~-~g~~p~~~t~~~Li~~~~~-~-g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
..+.+|+++|+.... ..+.-|..+...++..... . .....-.++.+-+....+..++..+...++..++..+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345667777763322 3455677777777777765 2 233333455555555455778888899999999999999999
Q ss_pred HHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 475 ISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELF 512 (880)
Q Consensus 475 ~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf 512 (880)
.+++...... ...|...|...|......|+..-...+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 9999987764 5568899999999999999976544443
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.84 E-value=7.3e+02 Score=27.68 Aligned_cols=70 Identities=10% Similarity=-0.061 Sum_probs=32.7
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002795 178 VRIMNQSGLMFTEGQ--MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFN 252 (880)
Q Consensus 178 ~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~ 252 (880)
++.+.+.|..|+... -.+.+..++..|+.+-+.-+++ .+......+.... ..+...+..|+.+.+..+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK----HGAIPDVKYPDIE-SELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCcc-cHHHHHHHCCCHHHHHHHHH
Confidence 444445565554432 2345555666777665444433 3321111111112 23444566777766655554
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.12 E-value=8.8e+02 Score=27.75 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=64.6
Q ss_pred HHHcCCHHHHHHHHHHHH---HCCCCCCHH----H-HHHHHHHHHHcCCHHHHHHHHHHHH-------HCCCCCC-----
Q 002795 547 SATAHQWEYFEYVYKGMA---LSGCQLDQT----K-HAWLLVEASRAGKCHLLEHAFDSLL-------EAGEIPH----- 606 (880)
Q Consensus 547 ~~~~~~~~~A~~l~~~m~---~~g~~pd~~----~-~~~ll~~~~~~G~~~~A~~~~~~m~-------~~g~~p~----- 606 (880)
+.-.|++.+|.+++...- ..|...++. + +|.|-..+.+.|.+..+..+|.... ..|+.|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 334578888877764321 112222211 1 2333333345566666666655444 2455442
Q ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh
Q 002795 607 ------PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNED 654 (880)
Q Consensus 607 ------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~ 654 (880)
..+|| ....|...|+.-.|++.|.+..+ -++.++..|..+-.+|.-
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~-vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH-VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 23555 67778888999999999988765 367899999999888864
No 382
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=5.2e+02 Score=28.02 Aligned_cols=86 Identities=9% Similarity=-0.027 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCC-HHHH
Q 002795 542 SMLEASATAHQWEYFEYVYKGMALS---GCQLDQTKHA--WLLVEASRAGKCHLLEHAFDSLLE-----AGEIPH-PLFF 610 (880)
Q Consensus 542 ~ll~a~~~~~~~~~A~~l~~~m~~~---g~~pd~~~~~--~ll~~~~~~G~~~~A~~~~~~m~~-----~g~~p~-~~~~ 610 (880)
.++...-+.++.++|+++++++... .-.|+.+.|. .....+...|+..++.+.++...+ .++.|+ ...|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444455567899999999998865 2356665554 445556789999999999987776 577773 4467
Q ss_pred HHHHHHHHHh-CCHHHHH
Q 002795 611 TEMLIQAIVQ-SNYEKAV 627 (880)
Q Consensus 611 ~~ll~~~~~~-g~~~~A~ 627 (880)
+.+-..|++. |++..+.
T Consensus 160 Y~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 7677777776 6654433
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=29.87 E-value=1e+02 Score=18.61 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+|..+...|...|++++|...|...++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5667778888889999999999888763
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.51 E-value=2.3e+02 Score=27.92 Aligned_cols=52 Identities=6% Similarity=-0.038 Sum_probs=37.3
Q ss_pred hCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 467 DGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 467 ~~g~~~~A~~i~~~m~~--~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
...+.+......+...+ +..|+..+|..++..+...|+.++|.++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555555444 35688888888888888888888888888888773
No 385
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.37 E-value=3e+02 Score=23.48 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002795 368 VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 437 (880)
Q Consensus 368 A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 437 (880)
+.++++.+.+.|+ .+..-...+-.+-...|+.+.|.+++..+. +|... |...+.++...|.-.-
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~a----F~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGW----FSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcH----HHHHHHHHHHcCchhh
Confidence 3445555555552 122222222222224466666666666666 55442 5556666655555443
No 386
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.26 E-value=6e+02 Score=25.50 Aligned_cols=88 Identities=11% Similarity=0.177 Sum_probs=44.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhC
Q 002795 394 FWEEGKINEAVAAVRNMEQRGVVGTA----SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDG 468 (880)
Q Consensus 394 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~ 468 (880)
+.+.|++++|..-|.+.+..-+.... ..|..-..++.+.+.++.|+.-..+... +.|+. .....-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHHHhh
Confidence 44556666666666655544222111 2233334455566666666666555554 33321 1122223456666
Q ss_pred CCHHHHHHHHHHHhhC
Q 002795 469 GHIDDCISIFQHMKDH 484 (880)
Q Consensus 469 g~~~~A~~i~~~m~~~ 484 (880)
..++.|+.-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6666666666666653
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.12 E-value=1.9e+02 Score=28.63 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=38.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
...+.+......+.+.+.....|+...|..++..+...|+.++|..+..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555544444444443345789999999999999999999998888888764
No 388
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=27.72 E-value=3.4e+02 Score=31.55 Aligned_cols=89 Identities=10% Similarity=0.007 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 002795 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVA 405 (880)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~ 405 (880)
-.|+...|...+.........-..+....|...+.+.|....|..++.+.+... ....-++..+.++|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356666666666555432111122233344555555666666666666655543 2334556666677777777777777
Q ss_pred HHHHHHHCCC
Q 002795 406 AVRNMEQRGV 415 (880)
Q Consensus 406 ~~~~m~~~g~ 415 (880)
.|++..+...
T Consensus 698 ~~~~a~~~~~ 707 (886)
T KOG4507|consen 698 AFRQALKLTT 707 (886)
T ss_pred HHHHHHhcCC
Confidence 7777666554
No 389
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=27.49 E-value=1.2e+03 Score=28.59 Aligned_cols=392 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 002795 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL-LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274 (880)
Q Consensus 196 ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L-l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~ 274 (880)
++-.+.++|+.+.|.++..+. +...+-...|... ..+|.++-....=.++-.++..+.|-.+.-.-=.++=...
T Consensus 331 ~vyy~lR~G~lk~A~~~l~e~-----~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~ii 405 (835)
T KOG2168|consen 331 LVYYLLRCGDLKAASQFLNEN-----KDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKII 405 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHCC
Q 002795 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH----------QWKGVFWVFKQLRKSG 344 (880)
Q Consensus 275 ~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g----------~~~~A~~l~~~m~~~g 344 (880)
.++.--..--+++... +-..|--|+-.....+ ..+.-..++..--..-
T Consensus 406 g~cd~~~~~~ev~~ti----------------------ED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sY 463 (835)
T KOG2168|consen 406 GGCDLRRDLPEVADTI----------------------EDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESY 463 (835)
T ss_pred hcCccccccHHHHhHH----------------------HHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHh
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 002795 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT-ASVYY 423 (880)
Q Consensus 345 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 423 (880)
+.++......-..++.-+|.++.|+.++......+ .|++.....+.-|.-.+.-...-+=+--|-..+..+. ..-+.
T Consensus 464 Ft~ng~~p~~Yf~~LlLsgqfe~AI~fL~~~~~~~--~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~ 541 (835)
T KOG2168|consen 464 FTNNGSQPLLYFQVLLLSGQFERAIEFLHREEPNR--IDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFA 541 (835)
T ss_pred hccCCCChHHHHHHHHHHHhHHHHHHHHHhhcCCc--chhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHH
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh--
Q 002795 424 ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR-- 501 (880)
Q Consensus 424 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~-- 501 (880)
-||.+|.+.=...++...++-..- ....++...-+ |+..|...--++.. ..|..+...+.||..-..-++.-|..
T Consensus 542 rLi~~Ytk~fe~~d~~~al~y~~~-lr~~~d~q~~~-l~l~~v~~lVl~t~-~~f~~iLG~i~~dG~r~~G~l~~f~~~~ 618 (835)
T KOG2168|consen 542 RLIIAYTKSFEYTDTRVALQYYYL-LRLNKDPQGSN-LFLKCVCELVLETE-EEFDLILGKIKPDGSREPGLLDEFLPLI 618 (835)
T ss_pred HHHHHHHHHHHhccchhhhheeee-ecccCChhHHH-HHHHHHHHHHHhcc-ccHHHHhcccCCCCCCCcchHhhhccch
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 502 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 581 (880)
Q Consensus 502 ~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~ 581 (880)
.....-+.++-++....| -|.--|.-|-..|+++.|..+..... ...........
T Consensus 619 ~~~~~i~~~vA~~a~~~G-------------------~~~~sI~LY~lag~yd~al~link~L------S~~l~~~~~~~ 673 (835)
T KOG2168|consen 619 EDLQKIILEVASEADEDG-------------------LFEDAILLYHLAGDYDKALELINKLL------SQVLHSPTLGQ 673 (835)
T ss_pred hhHHHHHHHHHHHHHhcC-------------------CHHHHHHHHHHhhhhhHHHHHHHHHH------HHHHhhcccCC
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHhCCHHHHHHHHHHhhhCCCccCHHH
Q 002795 582 ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEM--------LIQAIVQSNYEKAVALINAMAYAPFHITERQ 644 (880)
Q Consensus 582 ~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~l--------l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 644 (880)
--+..-.+.|...-+.....+..+..+.+.++ +.-.+..|++++|+.+++...--+..|..+.
T Consensus 674 ~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP~~~~~v~ 744 (835)
T KOG2168|consen 674 SNKERLGDLALSMNDIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEHLDLIPLDPLSVD 744 (835)
T ss_pred cchhhHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCChhhhh
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.40 E-value=1.2e+02 Score=19.21 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 002795 469 GHIDDCISIFQHMKDHCEPNIGTVNAMLK 497 (880)
Q Consensus 469 g~~~~A~~i~~~m~~~~~pd~~~~~~Li~ 497 (880)
|+.+.|..+|+.+...++-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677788888877766666777766554
No 391
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.10 E-value=3.7e+02 Score=24.55 Aligned_cols=43 Identities=7% Similarity=-0.061 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002795 555 YFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDS 597 (880)
Q Consensus 555 ~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~ 597 (880)
.+.++|..|..+|+.-. ...|......+...|++++|..+|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777777655 55566666667777777777777764
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.04 E-value=1.6e+02 Score=22.37 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=21.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 002795 613 MLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 650 (880)
Q Consensus 613 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 650 (880)
+..++++.|++++|.+..+.+.. +.|+......|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 56667777777777777777763 4566555444443
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=7.5e+02 Score=25.59 Aligned_cols=118 Identities=8% Similarity=0.000 Sum_probs=66.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002795 499 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT-YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 577 (880)
Q Consensus 499 ~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t-~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ 577 (880)
|....+++.|+..|.+.+. +.|+..+ |+.-+-.+.+..+++.+.+=-++.++ +.||...-..
T Consensus 20 ~f~~k~y~~ai~~y~raI~---------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~ 82 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---------------INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHY 82 (284)
T ss_pred ccchhhhchHHHHHHHHHh---------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHH
Confidence 3344567778887777776 4577644 45555566677777777766655553 5666544433
Q ss_pred HHH-HHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 002795 578 LLV-EASRAGKCHLLEHAFDSLL----EAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 578 ll~-~~~~~G~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
++. +......+++|...+.+.. +..++|-...+..|..+-...=...++.++.++.
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 333 3456667777777766553 2344444445554444433333344444444443
No 394
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.62 E-value=7.6e+02 Score=25.53 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=71.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HhCCHHHHH
Q 002795 550 AHQWEYFEYVYKGMALSGCQLDQTKH-AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI-VQSNYEKAV 627 (880)
Q Consensus 550 ~~~~~~A~~l~~~m~~~g~~pd~~~~-~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~A~ 627 (880)
...+..|...|.+.+ .+.|+..+| +.=+-++.+..+++.+..=-...++ +.|+.+--..++..+. ....+++|+
T Consensus 23 ~k~y~~ai~~y~raI--~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAI--CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHH--hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 345666666555544 468887554 4445566777777776655544444 5677665554554444 446799999
Q ss_pred HHHHHhh----hCCCccCHHHHHHHHHHhhhccCHHHHHHHHH
Q 002795 628 ALINAMA----YAPFHITERQWTELFESNEDRISRDKLEKLLN 666 (880)
Q Consensus 628 ~l~~~m~----~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~ 666 (880)
..+.+.. +.++.|-...+..|..+-...-......++.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 9888873 56777777888888887555544444555444
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.44 E-value=61 Score=29.89 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 586 GKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQ 616 (880)
Q Consensus 586 G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 616 (880)
|.-.+|-.+|..|++.|-.|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444456677777777776666 56666544
No 396
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.27 E-value=3.1e+02 Score=24.14 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhc--cCHHHHHHHHHHHHhCCCC
Q 002795 612 EMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDR--ISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 612 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~--~~~~~a~~l~~~~~~~~~~ 674 (880)
.++..|...|+.++|...+.++..... -......++..+... ...+.+..++..+.+.+..
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 355566666666666666666531111 111222333333222 2223455566666665554
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.98 E-value=8.1e+02 Score=25.60 Aligned_cols=94 Identities=15% Similarity=0.048 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 159 RVLVDRLSEREMTAKNWKFV----RIMNQSGLMFTEGQMLKLLKGLGDKGS-----WRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 159 ~~li~~l~~~~~~~~A~~l~----~~m~~~g~~~~~~~~~~ll~~~~~~g~-----~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
..-...+.+.+....|-++- +-..+.+++.+......++..+...+. .+-..+...|. +.+ .....|+.
T Consensus 14 ~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~-~~~~Gdp~ 91 (260)
T PF04190_consen 14 YSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFG-SYKFGDPE 91 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTS-S-TT--HH
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccC-CCCCCCHH
Confidence 34445677778777666554 444456777888777777777765532 23344445555 322 23345788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLM 254 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m 254 (880)
....+...|.+.|++.+|+.-|-.-
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8889999999999999888766543
No 398
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.89 E-value=4.6e+02 Score=27.92 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 195 ~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
.++....+.+++......+..+ ..+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i---------~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQI---------KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444 2233344455555666777777766666654
No 399
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.41 E-value=84 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=16.0
Q ss_pred hHHHHHHHhcCCCCChHH
Q 002795 2 EKIKQKLLKHGVFPTPKI 19 (880)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (880)
++|+.-|.++||++++..
T Consensus 7 ~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 579999999999998876
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.32 E-value=3.4e+02 Score=25.55 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=32.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 336 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
+...+++.|++++..= ..++..+...++.-.|..+|+.+.+.+...+..|-..-++.+...
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3344556666655432 345566666666666777777777665444333333333333333
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.22 E-value=9.2e+02 Score=26.00 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=57.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 361 QSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440 (880)
Q Consensus 361 ~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 440 (880)
...-+.+|+++|++..+.| ..+|+. ......--...+.+.+++...-...-..|..+-.+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr~-------sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYRQ-------SQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHhh-------HHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 3445667888888887765 334431 11111111223334455443222323345555567788888888
Q ss_pred HHHHHHhcCCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 441 VVEKIKSLRHSKPLEI---TFTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 441 l~~~m~~~~~~~p~~~---t~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
.|+.+.+ ..|-.. .-..|+.+|....-+.++..++-+..+
T Consensus 297 ~~RDL~k---e~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 297 IMRDLMK---EFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8888766 223221 234566666666656666666555544
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.08 E-value=1e+03 Score=26.56 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCccH
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGL--KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS---------GEAIGA 384 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~---------g~~~d~ 384 (880)
.+.-+..-|...|+++.|++.|.+.+..-- +-....|-.+|..-.-.|+|.....+..+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 355566778899999999999999765421 113344555666666778887776666665554 123334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--C----CCCCHHHHHHHHHHHHhCCCHHHHHHH-----HHHHHhcCCCCC
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQR--G----VVGTASVYYELACCLCNNGRWQDAMLV-----VEKIKSLRHSKP 453 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--g----~~p~~~t~~~Li~~~~~~g~~~~A~~l-----~~~m~~~~~~~p 453 (880)
.++..|.....+ ++..|.+.|-..... + +.|...+....+++++--++-+--+.+ |+...+ ..|
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle---l~P 306 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE---LEP 306 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh---cCh
Confidence 455555544443 666666665443321 1 234333344455555554443322222 222222 223
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 002795 454 LEITFTGLIISSMDGGHIDDCISIFQHMKDH 484 (880)
Q Consensus 454 ~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~ 484 (880)
. .. .+|..+. .+++..+..++++++.+
T Consensus 307 q--lr-~il~~fy-~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 307 Q--LR-EILFKFY-SSKYASCLELLREIKPR 333 (466)
T ss_pred H--HH-HHHHHHh-hhhHHHHHHHHHHhccc
Confidence 2 22 2222222 46788888999988874
No 403
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=23.82 E-value=1.5e+02 Score=25.58 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=25.2
Q ss_pred HHHHHHhcC-------CCCChHHHHHhhHHHHHHHHHHHHHh
Q 002795 4 IKQKLLKHG-------VFPTPKILRSIRKKEIQKHNRKQAKI 38 (880)
Q Consensus 4 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (880)
|+|-|-+|| -.|+||+|..+. ++|+|.+++.-|.
T Consensus 66 l~relvqkgWvGYiya~~~P~k~leei~-~~i~keiEelEk~ 106 (113)
T COG5625 66 LARELVQKGWVGYIYATTPPPKPLEEIE-EEIMKEIEELEKE 106 (113)
T ss_pred HHHHHHhccceeeEecCCCCchHHHHHH-HHHHHHHHHHHHH
Confidence 456677777 368999999874 6788888776643
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.77 E-value=7.7e+02 Score=27.45 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=39.6
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HHcCChHHHHHHHHHHHHc
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKPSAA--TYGLAMEVM--LQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~--~~~g~~~~A~~l~~~m~~~ 378 (880)
+.+.+++..|.++|..+... +.++.. .|..+..+| ...-++.+|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45789999999999999886 555554 344455555 3556788899999887765
No 405
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.77 E-value=7.2e+02 Score=25.36 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002795 533 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL---DQTKH--AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP 607 (880)
Q Consensus 533 ~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~p---d~~~~--~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~ 607 (880)
+.++..-++.|+--|..+..+.+|...|.. ..|+.| |..++ ..-|......|++++|.+....+...=+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 456677778888888888778887777754 456666 23332 34566678999999999988866432222232
Q ss_pred HHHH----HHHHHHHHhCCHHHHHHHHHHhh
Q 002795 608 LFFT----EMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 608 ~~~~----~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
..+. .-+.-..+.|..++|+++.+.=.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 1222 22455667788999998887643
No 406
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=23.51 E-value=73 Score=29.40 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 002795 328 HQWKGVFWVFKQLRKSGLKPSA 349 (880)
Q Consensus 328 g~~~~A~~l~~~m~~~g~~pd~ 349 (880)
|.-..|-.+|..|++.|-.||.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc
Confidence 3444455555555555555553
No 407
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.16 E-value=7.4e+02 Score=27.53 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhccchhhhhhh
Q 002795 679 TVSNLSRALHALCRSEKERDLSSS 702 (880)
Q Consensus 679 ~~~~~~~~~~~~~~~g~~~ea~~~ 702 (880)
.+..++.-...-...|++++|.-.
T Consensus 245 ~~~~l~~na~rr~~~~ry~da~~r 268 (380)
T TIGR02710 245 LLGDLLANAERRATQGRYDDAAAR 268 (380)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHH
Confidence 444443334444678888888543
No 408
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.07 E-value=9.3e+02 Score=25.62 Aligned_cols=199 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHcC--CHHHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 235 LAILGKAG--RPHEALRIFNLM-LEDCNLYPDIAAYHSVAVTLGQVG-----LLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 235 l~~~~~~g--~~~~A~~lf~~m-~~~~g~~pd~~t~~~ll~~~~~~g-----~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
+.++++.| .+..+++++..+ ... ++...|..++..+.... ........|..... ..+..++.++
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E----~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~---~l~~~~~~~l- 116 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNE----TDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVR---RLLEPLYERL- 116 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT------SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHH---HHHHHHHHH--
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCC----CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHHHHHHHHc-
Q ss_pred CCCCCCCHHHHHHHHHHH-hcCCC-----HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002795 307 DPVLEPDLVVYNAVLNAC-VPSHQ-----WKGVFWVFKQLRKSGL----KPSAATYGLAMEVMLQSGKYDLVHEFFRKMA 376 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~-~~~g~-----~~~A~~l~~~m~~~g~----~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 376 (880)
.....++......+++.. ..... ...|.+.|......+. ..+......++....+.|..+.-..+++...
T Consensus 117 ~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~ 196 (324)
T PF11838_consen 117 GWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK 196 (324)
T ss_dssp -SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHH
Q 002795 377 KSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL-CNNGRWQDAMLVVEK 444 (880)
Q Consensus 377 ~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~-~~~g~~~~A~~l~~~ 444 (880)
. ..+......++.+.+...+.+...++++.....+..+....+..+.... ......+.+...+..
T Consensus 197 ~---~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 197 N---STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp T---TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred c---cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.53 E-value=1.4e+02 Score=31.74 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002795 310 LEPDLVV-YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354 (880)
Q Consensus 310 ~~pd~~t-y~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 354 (880)
+.||..+ ||..|...++.||+++|+.++++..+.|+.--..||-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4456555 56889999999999999999999999887655555443
No 410
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=22.43 E-value=8.7e+02 Score=25.04 Aligned_cols=114 Identities=11% Similarity=0.186 Sum_probs=64.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
|.+..+.+--.++.+-.... +++-+..-..+++ +...|+..+|+.-++.-....+..- -..+|.-...|.....
T Consensus 169 ysklsd~qiL~Rl~~v~k~E-kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn---~enVfKv~d~PhP~~v 242 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAE-KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVN---QENVFKVCDEPHPLLV 242 (333)
T ss_pred hcccCHHHHHHHHHHHHHHh-CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccc---hhhhhhccCCCChHHH
Confidence 33333333333444444333 5555555555544 5567888888877766544321100 0334444466777777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVM 359 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 359 (880)
..++..|. .+++++|.+++.++-+.|..|.... +++.+++
T Consensus 243 ~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 243 KKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred HHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 77777665 4678888888888878887765433 4455444
No 411
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.17 E-value=8.2e+02 Score=24.70 Aligned_cols=68 Identities=19% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCC-------HHHHHHHHHHHHhCcCCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002795 192 QMLKLLKGLGDKGS-------WRQAMSVLDWVYGLKDKRDL-KS-RFVYTKLLAILGKAGRPHEALRIFNLMLEDCN 259 (880)
Q Consensus 192 ~~~~ll~~~~~~g~-------~~~A~~l~~~~~~~~~~~~~-~d-~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g 259 (880)
.+..+.-.|...|+ +..|...|...+.....+.. .+ ..+.-.+...+.+.|+.++|.+.|..+....+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 44444455555555 45577777777655433111 12 23333445556677888888888888887633
No 412
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.13 E-value=3.1e+02 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 002795 389 VLVRAFWEEGKINEAVAAVRNM 410 (880)
Q Consensus 389 ~Li~~~~~~g~~~~A~~~~~~m 410 (880)
.+|.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555554444
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.79 E-value=1.1e+03 Score=26.13 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=42.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HhCCCHHHHHHHHHHHHh
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG--QMLKLLKGL--GDKGSWRQAMSVLDWVYG 218 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~--~~~~ll~~~--~~~g~~~~A~~l~~~~~~ 218 (880)
..+..+.+.++|..|.++|+.+... ++++.. .+..+..+| ...-++++|...++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445666899999999999999987 665554 445555555 356778899999997754
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.63 E-value=1.9e+02 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=10.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHH
Q 002795 319 AVLNACVPSHQWKGVFWVFKQL 340 (880)
Q Consensus 319 ~ll~~~~~~g~~~~A~~l~~~m 340 (880)
.+|.+|...|++++|.+++.++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555555444
No 415
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.57 E-value=1.8e+03 Score=28.42 Aligned_cols=83 Identities=7% Similarity=0.037 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002795 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGC 568 (880)
Q Consensus 490 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~ 568 (880)
.-|-..++.+-+.+..+.+.++-...++.-- .-.|. ..+++++.+.....|.+-+|...+-.
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~-----------dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------ 1046 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLP-----------DDNPSVALISTTVFNHHLDLGHWFQAYKAILR------ 1046 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------CcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------
Confidence 3466677778888888888887777766420 01122 23567777777777777776554322
Q ss_pred CCCH----HHHHHHHHHHHHcCCHH
Q 002795 569 QLDQ----TKHAWLLVEASRAGKCH 589 (880)
Q Consensus 569 ~pd~----~~~~~ll~~~~~~G~~~ 589 (880)
.||. .....|+..+..+|.++
T Consensus 1047 npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1047 NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred CCcHHHHHHHHHHHHHHHHhccchH
Confidence 4442 34455555666676655
No 416
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.55 E-value=3.6e+02 Score=25.35 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Q 002795 559 VYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQS 621 (880)
Q Consensus 559 l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 621 (880)
+.+.+.+.|+++++. -..++..+...+..-.|.++++.+.+.+..-+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555667766643 23455666666666777888888777665555555554555554444
No 417
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.45 E-value=8.2e+02 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 002795 269 SVAVTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 269 ~ll~~~~~~g~~~~A~~l~~~m~~ 292 (880)
..+......|++++|..-++.+.+
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344556666666666665544
No 418
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.00 E-value=1.2e+03 Score=26.11 Aligned_cols=182 Identities=10% Similarity=0.109 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 002795 457 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPN---IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533 (880)
Q Consensus 457 t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~ 533 (880)
.+.-+..-|..+|+++.|.+.|.+...-+... +..|-.+|..-.-.|++........+....- ....-....+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~----~~~~~~~q~v 227 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP----DANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc----hhhhhHHHhc
Confidence 45666677788888888888888866543332 3444455555555677776666665555420 0000000113
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHCC
Q 002795 534 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG------CQLDQTKHAWLLVEASRAGKCHLLEH-----AFDSLLEAG 602 (880)
Q Consensus 534 ~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g------~~pd~~~~~~ll~~~~~~G~~~~A~~-----~~~~m~~~g 602 (880)
.+-..++..+..-+.+ .+..|.+.|-...... +.|...+....+.+.+--++-+--.. .|..+.+
T Consensus 228 ~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle-- 303 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE-- 303 (466)
T ss_pred CcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh--
Confidence 3444555555444443 5555555443222111 23443333334444443333222222 2333333
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh-----CCCccCHHHHHHHHH
Q 002795 603 EIPHPLFFTEMLIQAIVQSNYEKAVALINAMAY-----APFHITERQWTELFE 650 (880)
Q Consensus 603 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~~ll~ 650 (880)
-.+..+. ++..++ .+++...+++++++.. --+.|...++-++++
T Consensus 304 --l~Pqlr~-il~~fy-~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 --LEPQLRE-ILFKFY-SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred --cChHHHH-HHHHHh-hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 2233444 333333 4778899999998852 223455555544443
No 419
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.88 E-value=8.2e+02 Score=28.46 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=13.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 002795 424 ELACCLCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 424 ~Li~~~~~~g~~~~A~~l~~~m~ 446 (880)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34555666666666666655553
No 420
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.83 E-value=5.8e+02 Score=30.93 Aligned_cols=97 Identities=9% Similarity=0.100 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhH-hhhhhhcCCCCCCCCHHHHHHHHHH
Q 002795 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRI-KNMHRKNWDPVLEPDLVVYNAVLNA 323 (880)
Q Consensus 245 ~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l-~~m~~~~f~~~~~pd~~ty~~ll~~ 323 (880)
++....+....+..|+.-+......++... .|++..|+.+++++...+...+ .+....+. ...+......++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lL---G~~d~~~If~LldA 255 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMI---GAVDKQYLYELLTG 255 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHH---cccCHHHHHHHHHH
Confidence 344444544444446666666666665443 5788888888777654331100 00001111 12233344455555
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
+.. ++...++.++++|...|+.+
T Consensus 256 L~~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 256 IIN-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCH
Confidence 443 67777777777777766643
No 421
>PF15604 Toxin_43: Putative toxin 43
Probab=20.41 E-value=6.9e+02 Score=23.78 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHhcCCCCChHHHHHhhHHHHHHHHH-HHHHhhhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCccCC
Q 002795 5 KQKLLKHGVFPTPKILRSIRKKEIQKHNR-KQAKIQSQAQLSPSQQQALAEEQHFQTLKREFKMFRRAVAAKSGDPLVGK 83 (880)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (880)
|.+.++.||.|+|++-.++|++ ++..++ ...+..-.....|.+.....+...=.+++ |+|+--||-...+|+
T Consensus 31 R~~y~~~~r~~~~~~~~~ar~~-~~~ki~e~~~~~l~s~~~~~~~a~~~A~~~A~~~m~------tlAALHNPD~iAGG~ 103 (152)
T PF15604_consen 31 REAYIDNGRARDGAAAQRARRE-LRDKIEELIEDELLSKGMSPREAEIQAEKQAKEWMK------TLAALHNPDMIAGGK 103 (152)
T ss_pred HHHHHhCCCCCChHHHHHHHHH-HHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHH------HHHhhcCcchhcCCC
Confidence 5678899999999999999998 443333 22222212222332222222222222233 455666777666676
Q ss_pred Cc
Q 002795 84 PW 85 (880)
Q Consensus 84 ~w 85 (880)
|-
T Consensus 104 ~~ 105 (152)
T PF15604_consen 104 DS 105 (152)
T ss_pred cc
Confidence 65
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=20.15 E-value=5.5e+02 Score=21.84 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=7.6
Q ss_pred HhCCCHHHHHHHHHHHH
Q 002795 430 CNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 430 ~~~g~~~~A~~l~~~m~ 446 (880)
...|++++|+..+++..
T Consensus 52 ~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 52 RRFGHYEEALQALEEAI 68 (94)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 34444444444444443
Done!