Query 002795
Match_columns 880
No_of_seqs 750 out of 3905
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 17:25:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002795.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1511-1515//hhsearch_pdb/002795hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 305.7 43.0 480 151-674 80-582 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 293.0 41.4 486 187-705 81-575 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 232.0 25.3 184 267-466 29-221 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 231.2 26.1 187 229-431 27-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 197.2 48.2 360 198-600 7-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 194.8 48.9 361 163-565 7-367 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 181.0 40.5 445 155-643 6-483 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 173.9 39.2 450 190-683 6-488 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 170.9 41.1 213 188-447 24-239 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 167.9 41.5 98 154-256 25-122 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=305.70 Aligned_cols=480 Identities=8% Similarity=-0.043 Sum_probs=403.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 88939999999999980799599999999998799977999999999999727999999999999982748999999999
Q 002795 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 151 ~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~ 230 (880)
..++...++.++..+.+.|++++|..+|+.|... .|+..++..++..|...|++++|..+|+.+... .++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 152 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-----NRSSAC 152 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-----GTCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCCHHH
T ss_conf 3789999999999998745834799999999960--899357999999999747699999999987335-----456508
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC--------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH
Q ss_conf 9999999997499789999999978829--------------99989999999999998259999999999999808862
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDC--------------NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK 296 (880)
Q Consensus 231 ~~~Li~~~~~~g~~~~A~~lf~~m~~~~--------------g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 296 (880)
++.++.+|.+.|++++|..+|+++.... +.+++..+|+.++.+|.+.|++++|..+|++|.+.
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 229 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--- 229 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
T ss_conf 99999999988669999999842488632232343343211235125899999889999839989999999999972---
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 476432103799878999999999999960899789999--9-9999988999999999999999998199589999999
Q 002795 297 RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW--V-FKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFR 373 (880)
Q Consensus 297 ~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~--l-~~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~ 373 (880)
.+.+...+..+...+...+....+.. + +..+...+..+...+|+.++..|.+.|++++|..+|+
T Consensus 230 -------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 230 -------------DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp -------------CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -------------9325699999998503461567899986577423443088999999999999807313999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99981998518899999999996299999999999999879999999999999999828997899999999996189998
Q 002795 374 KMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 453 (880)
Q Consensus 374 ~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p 453 (880)
++.+. +++..+++.++.+|.+.|++++|..+|+++...+.. +..++..++.++.+.|++++|..+++++.. ....
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 371 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPE 371 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCC
T ss_conf 76438--830999999999999846899999999999972955-379999999999982777799999999985--1835
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89999999999991799899999999976389999999999999998659998999999999873899964557999998
Q 002795 454 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533 (880)
Q Consensus 454 ~~~t~~~ll~~~~~~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~l~~~~~~~ 533 (880)
+..++..+...|.+.|++++|..+|+.+.+..+.+..+|+.++.+|.+.|++++|+.+|+++...+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------- 437 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-------------- 437 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------
T ss_conf 479999999999983569999999999987297778999999999997577799999999999868--------------
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCC--H
Q ss_conf 99999999999999981999899999999998799989999999999999829999999999999988----99999--9
Q 002795 534 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIPH--P 607 (880)
Q Consensus 534 ~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~----g~~p~--~ 607 (880)
..+..+|..++.+|...|++++|.++++.+.+.. +.+..++..+...|.+.|++++|..+|+.+.+. +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 1343899999999998579999999999999848-887679999999999818999999999999985323454535499
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999990999999999999452999539999999999965016999999999999848999
Q 002795 608 LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 608 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~l~~~~~~ 674 (880)
..|..++..+...|++++|..+++++.... ..+..+|..+...+...|+++.|...++++.+.++.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 999999999998047999999999999738-997389999999999817899999999999720888
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=293.02 Aligned_cols=486 Identities=12% Similarity=0.015 Sum_probs=385.5
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 77999999999999727999999999999982748999999999999999999749978999999997882999989999
Q 002795 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (880)
Q Consensus 187 ~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t 266 (880)
.++...++.++..+.+.|++++|..+|+.+.... |+..++..++.+|.+.|++++|..+|+.+.. .+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 152 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT-----GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSAC 152 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC---CCCCHHH
T ss_conf 7899999999999987458347999999999608-----9935799999999974769999999998733---5456508
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999825999999999999980886247643210379987899999999999996089978999999999988999
Q 002795 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (880)
Q Consensus 267 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (880)
++.++.+|.+.|++++|..+|+++...............++.+.+.+..+|+.++.+|.+.|++++|..+|++|.+.+.
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p- 231 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA- 231 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
T ss_conf 9999999998866999999984248863223234334321123512589999988999983998999999999997293-
Q ss_pred CCHHHHHHHHHHHHHCCCHH--HHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999999999999819958--99999-9999981998518899999999996299999999999999879999999999
Q 002795 347 PSAATYGLAMEVMLQSGKYD--LVHEF-FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYY 423 (880)
Q Consensus 347 pd~~ty~~ll~~~~~~g~~~--~A~~i-~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 423 (880)
.+...+..+...+...+... .+..+ +..+...+......+|+.++..|.+.|++++|..+|+++... .++..+|+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHH
T ss_conf 2569999999850346156789998657742344308899999999999980731399999999876438--83099999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999982899789999999999618999889999999999991799899999999976389999999999999998659
Q 002795 424 ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND 503 (880)
Q Consensus 424 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~~~~~g 503 (880)
.++.+|.+.|++++|..+|+++.... ..+..++..++..+.+.|+.++|..+++.+....+.+..+|+.++.+|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 99999998468999999999999729--5537999999999998277779999999998518354799999999999835
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99899999999987389996455799999899999999999999981999899999999998799989999999999999
Q 002795 504 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 583 (880)
Q Consensus 504 ~~~~A~~l~~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~ 583 (880)
++++|..+|+++.... ..+..+|..++.++...|++++|.++++++...+ +.+..++..++.+|.
T Consensus 388 ~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD--------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp CHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 6999999999998729--------------7778999999999997577799999999999868-134389999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHCCC
Q ss_conf 82999999999999998899999999999999999909999999999994529----99539--9999999999650169
Q 002795 584 RAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA----PFHIT--ERQWTELFESNEDRIS 657 (880)
Q Consensus 584 ~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~p~--~~~~~~ll~a~~~~~~ 657 (880)
+.|++++|..+|+.+.+.. ..+..+|+.++..+...|++++|+.+|+++... +..|+ ..+|..+...|...|+
T Consensus 453 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8579999999999999848-887679999999999818999999999999985323454535499999999999998047
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
Q ss_conf 999999999998489999802199999999999830505332311025
Q 002795 658 RDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHF 705 (880)
Q Consensus 658 ~~~a~~l~~~l~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~ 705 (880)
.+.|...++.+.+.++. ....+..+...+...|++++|.+.+..
T Consensus 532 ~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTN----DANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999999973899----738999999999981789999999999
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=232.05 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=83.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC---------HHHHHHHH
Q ss_conf 999999998259999999999999808862476432103799878999999999999960899---------78999999
Q 002795 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ---------WKGVFWVF 337 (880)
Q Consensus 267 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~---------~~~A~~l~ 337 (880)
++.+|.+|++.|++++|.++|++|.+.| +.||..+||++|.+|++.+. .+.|.++|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~G---------------v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf 93 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNG---------------VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHT---------------CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---------------CCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHH
T ss_conf 9999999985989999999999999818---------------9987839999999998578304333212499999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99998899999999999999999819958999999999981998518899999999996299999999999999879999
Q 002795 338 KQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 417 (880)
Q Consensus 338 ~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 417 (880)
++|...|+.||..||+.+|.+|++.|++++|..+|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 94 ~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 94 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99998089998999999999998469778899999999972898861110489999998889999999999998629999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999998289978999999999961899988999999999999
Q 002795 418 TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 466 (880)
Q Consensus 418 ~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~ 466 (880)
+..+|+.||.+|++.|++++|..++++|.+ .+..|+..||+.++..++
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH
T ss_conf 999999999998538989999999999999-489969999999999983
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=231.17 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999997499789999999978829999899999999999982599---------99999999999808862476
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL---------LKELVKLIERMRQKPSKRIK 299 (880)
Q Consensus 229 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~---------~~~A~~l~~~m~~~g~~~l~ 299 (880)
.+++.+|.+|++.|++++|+++|++|.+. |+.||..+|+++|.+|++.+. ++.|.++|++|...|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G----- 100 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK----- 100 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHC-----
T ss_conf 99999999998598999999999999981-899878399999999985783043332124999999999999808-----
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 43210379987899999999999996089978999999999988999999999999999998199589999999999819
Q 002795 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG 379 (880)
Q Consensus 300 ~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g 379 (880)
+.||..+||++|.+|++.|++++|..+|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|
T Consensus 101 ----------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 101 ----------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf ----------9998999999999998469778899999999972898861110489999998889999999999998629
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9851889999999999629999999999999987999999999999999982
Q 002795 380 EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 380 ~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
+.||..+|++||.+|++.|++++|.++|++|.+.+..|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9999999999999985389899999999999994899699999999999830
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=197.23 Aligned_cols=360 Identities=12% Similarity=0.066 Sum_probs=165.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99972799999999999998274899999999999999999974997899999999788299998999999999999825
Q 002795 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 198 ~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
..+...|++++|...+..+++..| .+...+..+...+...|++++|...++...+. .+.+..+|..+...+.+.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHC
T ss_conf 999877999999999999998497----88999999999999868999999999999761--978669999999999877
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999999998088624764321037998789999999999999608997899999999998899999999999999
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~ 357 (880)
|++++|...|+++... .+.+...|..+..++...|++++|...|.++.+.. +.+...+..+..
T Consensus 81 g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 143 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRL----------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp TCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 9999999999999874----------------96539999999999998589999999999999759-896899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99981995899999999998199851889999999999629999999999999987999999999999999982899789
Q 002795 358 VMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 437 (880)
Q Consensus 358 ~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 437 (880)
.+...|++++|..+|.++.+.. +.+..+|..+...+...|++++|...|+++...++. +...|..+...+...|++++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHH
T ss_conf 9998468999999999998729-897899999999999859999999999999855988-67999999999998578999
Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999996189998-899999999999917998999999999763899999999999999986599989999999998
Q 002795 438 AMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 516 (880)
Q Consensus 438 A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~ 516 (880)
|...+.+... ..| +..++..+...+...|+++.|...|+.+.+..+.+..+|..+...+.+.|++++|...|+++.
T Consensus 222 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 222 AVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999985---2968789999999999986889999999999986499988999999999998699799999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 73899964557999998999999999999999819998999999999987999899999999999998299999999999
Q 002795 517 RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFD 596 (880)
Q Consensus 517 ~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~ 596 (880)
... ..+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...|+
T Consensus 299 ~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 299 RLC--------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHC--------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 649--------------444999999999999848999999999999860-98739999779999998688899999999
Q ss_pred HHHH
Q ss_conf 9998
Q 002795 597 SLLE 600 (880)
Q Consensus 597 ~m~~ 600 (880)
.+.+
T Consensus 364 ~a~~ 367 (388)
T 1w3b_A 364 EAIR 367 (388)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9986
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=194.83 Aligned_cols=361 Identities=14% Similarity=0.043 Sum_probs=170.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99980799599999999998799977999999999999727999999999999982748999999999999999999749
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g 242 (880)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++..++..+ .+..+|..+...+.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p----~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHCC
T ss_conf 99987799999999999999849-78899999999999986899999999999976197----86699999999998779
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 97899999999788299998999999999999825999999999999980886247643210379987899999999999
Q 002795 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (880)
Q Consensus 243 ~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~ 322 (880)
++++|...|+++... .+.+..+|..+...+...|++++|...|..+... .+.+...+..+..
T Consensus 82 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----------------NPDLYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----------------CTTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHH
T ss_conf 999999999999874--9653999999999999858999999999999975----------------9896899999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99608997899999999998899999999999999999819958999999999981998518899999999996299999
Q 002795 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINE 402 (880)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~ 402 (880)
.+...|++++|...|.++.... +.+..++..+...+...|+++.|...|+++.+.+ +.+...+..+...+...|++++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9998468999999999998729-8978999999999998599999999999998559-8867999999999998578999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999987999999999999999982899789999999999618999889999999999991799899999999976
Q 002795 403 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 482 (880)
Q Consensus 403 A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~i~~~m~ 482 (880)
|...|++.....+. +..++..+...+...|++++|...++++... .+.+..++..+...+.+.|++++|...|+.+.
T Consensus 222 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 222 AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999852968-7899999999999868899999999999864--99988999999999998699799999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 38999999999999999865999899999999987389996455799999899999999999999981999899999999
Q 002795 483 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 562 (880)
Q Consensus 483 ~~~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~ 562 (880)
+..+.+..++..+...+.+.|++++|...|+++.... ..+..++..+...+...|++++|...+++
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------------PEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 6494449999999999998489999999999998609--------------87399997799999986888999999999
Q ss_pred HHH
Q ss_conf 998
Q 002795 563 MAL 565 (880)
Q Consensus 563 m~~ 565 (880)
+.+
T Consensus 365 a~~ 367 (388)
T 1w3b_A 365 AIR 367 (388)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 986
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=181.01 Aligned_cols=445 Identities=11% Similarity=-0.026 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99999999999807995999999999987999779999999999997279999999999999827489999999999999
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~L 234 (880)
...+......+...|++++|+..|+.+.... |+...+..+...+...|+++.|...++.+++..+ .+..+|..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP----DYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHH
T ss_conf 7999998789998602789999999998559--2278998688999988549999999987760693----789999988
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCH
Q ss_conf 99999749978999999997882999989999999999998259999999999999808862476432103799878999
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 235 i~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
..++.+.|++++|...|+.+... .+++......++..+........+...+..+...+ ..|+.
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~ 142 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLN--GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT---------------ATPTE 142 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_conf 89999876688899999999955--98751137899999999999999999999899998---------------76651
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--------CC-HHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----
Q ss_conf 99999999996089978999999999988999--------99-9999999999998---1995899999999998-----
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK--------PS-AATYGLAMEVMLQ---SGKYDLVHEFFRKMAK----- 377 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~--------pd-~~ty~~ll~~~~~---~g~~~~A~~i~~~m~~----- 377 (880)
..++.................+...+...... |+ ...+......+.. .|+++.|..+++++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 26772467886344786158999998625878888872599588899998999987623322999999999999886654
Q ss_pred C--CC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 1--99------851889999999999629999999999999987999999999999999982899789999999999618
Q 002795 378 S--GE------AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 449 (880)
Q Consensus 378 ~--g~------~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 449 (880)
. .. +.+..++..+...+...|++++|...|+.+...+.. ...+..+...+...|++++|...++++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 299 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL- 299 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-
T ss_conf 22381001148278999999999999878999999999999863864--899999999999888899999999998613-
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99988999999999999179989999999997638999999999999999865999899999999987389996455799
Q 002795 450 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529 (880)
Q Consensus 450 ~~~p~~~t~~~ll~~~~~~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~l~~~ 529 (880)
...+...+..+...+...|+++.|...|+......+.+...+..+...+...|++++|...|+.+....
T Consensus 300 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------- 368 (514)
T 2gw1_A 300 -DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---------- 368 (514)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS----------
T ss_pred -CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----------
T ss_conf -867789999999999980779999999999987385028999999999998689999999999999875----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHC
Q ss_conf 9998999999999999999819998999999999987999-89----9999999999998---29999999999999988
Q 002795 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ-LD----QTKHAWLLVEASR---AGKCHLLEHAFDSLLEA 601 (880)
Q Consensus 530 ~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~-pd----~~~~~~ll~~~~~---~G~~~~A~~~~~~m~~~ 601 (880)
..+..++..+...+...|+++.|...++.+...... ++ ...+..+...|.. .|++++|...|+.+...
T Consensus 369 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 369 ----PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp ----TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ----4677899999999987889999999999999761233217899999999999986633258889999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999999999999999999099999999999945299953999
Q 002795 602 GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITER 643 (880)
Q Consensus 602 g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 643 (880)
. ..+...+..+...+...|++++|...+++... ..|+..
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred C-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCH
T ss_conf 8-55589999999999982579999999999987--661468
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=173.93 Aligned_cols=450 Identities=9% Similarity=-0.001 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999999999727999999999999982748999999999999999999749978999999997882999989999999
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
...+......+...|++++|...|+.++... |+..+|..+..++.+.|++++|...|+.+.+. .+.+..+|..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHH
T ss_conf 7999998789998602789999999998559-----22789986889999885499999999877606--9378999998
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999825999999999999980886247643210379987899999999999996089978999999999988999999
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (880)
+..++...|++++|...|..+.... +++......++..+........+...+..+...+..|+.
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNG----------------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS----------------SCCGGGTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899998766888999999999559----------------875113789999999999999999999989999876651
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----
Q ss_conf 9999999999981995899999999998199---------8518899999999996---2999999999999998-----
Q 002795 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE---------AIGALTYKVLVRAFWE---EGKINEAVAAVRNMEQ----- 412 (880)
Q Consensus 350 ~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~---------~~d~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~----- 412 (880)
..+..-...............+...+..... +.+...+......+.. .|++++|..+|+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 26772467886344786158999998625878888872599588899998999987623322999999999999886654
Q ss_pred C--CC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 7--99------999999999999998289978999999999961899988999999999999179989999999997638
Q 002795 413 R--GV------VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH 484 (880)
Q Consensus 413 ~--g~------~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~i~~~m~~~ 484 (880)
. .. ..+...+..+...+...|++++|...+.++... .|+...+..+...+...|+++.|...++.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 22381001148278999999999999878999999999999863---864899999999999888899999999998613
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999986599989999999998738999645579999989999999999999998199989999999999
Q 002795 485 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 564 (880)
Q Consensus 485 ~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~ 564 (880)
.+.+...+..+...+...|++++|...|+++.... ..+...+..+...+...|+++.|...++.+.
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------------PENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 86778999999999998077999999999998738--------------5028999999999998689999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---HCCHHHHHHHHHHHHHC
Q ss_conf 879998999999999999982999999999999998899-999----9999999999999---09999999999994529
Q 002795 565 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGE-IPH----PLFFTEMLIQAIV---QSNYEKAVALINAMAYA 636 (880)
Q Consensus 565 ~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~---~g~~~~A~~l~~~m~~~ 636 (880)
... +.+...+..+...|...|++++|...|+.+..... .+. ...+..+...+.. .|++++|...++++...
T Consensus 366 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 366 RKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 875-4677899999999987889999999999999761233217899999999999986633258889999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99539999999999965016999999999999848999980219999
Q 002795 637 PFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 683 (880)
Q Consensus 637 ~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~l~~~~~~p~~~~~~~~ 683 (880)
. ..+...+..+...+...++.+.|...++.+.+.++ +.......
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~ 488 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR--TMEEKLQA 488 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CCHHHHHH
T ss_conf 8-55589999999999982579999999999987661--46889999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=170.94 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 79999999999997279999999999999827489999999999999999997499789999999978829999899999
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (880)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~ 267 (880)
.+...+..+...+...|++++|..+|+.++...+ .+..+|..+..++...|++++|...|+.+.+. .+.+..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 97 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP----DNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHH
T ss_conf 8999999999999987999999999999998497----16899999999999879979999999999844--98748999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998259999999999999808862476432103799878999---999999999960899789999999999889
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL---VVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~---~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g 344 (880)
..+...+...|++++|...|+.+... .+.+. ..+..+...+..
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~------------------ 143 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKS----------------NPSENEEKEAQSQLIKSDEM------------------ 143 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS----------------CCCHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC----------------CCCCHHHHHHHHHHHHHHHH------------------
T ss_conf 99999999869999999999999724----------------99970168899999999999------------------
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999999999999998199589999999999819985188999999999962999999999999998799999999999
Q 002795 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE 424 (880)
Q Consensus 345 ~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 424 (880)
..+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+++...+. .+..++..
T Consensus 144 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 216 (450)
T 2y4t_A 144 -----QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYK 216 (450)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHH
T ss_pred -----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHH
T ss_conf -----999999999998689999999999999868-89769999999999877999999999999998688-98799999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999828997899999999996
Q 002795 425 LACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 425 Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
+...|...|++++|...|+++..
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999975999999999999987
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=167.89 Aligned_cols=98 Identities=17% Similarity=0.014 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 39999999999980799599999999998799977999999999999727999999999999982748999999999999
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~ 233 (880)
+...+..+...+...|++++|+.+|+.+.... +.+...+..+...+...|++++|...|+.+++..+ .+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM----DFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC----CCHHHHHH
T ss_conf 99999999999998799999999999999849-71689999999999987997999999999984498----74899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999974997899999999788
Q 002795 234 LLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 234 Li~~~~~~g~~~~A~~lf~~m~~ 256 (880)
+..+|.+.|++++|...|+.+..
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999986999999999999972
Done!