Query 002796
Match_columns 880
No_of_seqs 8 out of 10
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 07:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05077 DUF678: Protein of un 21.7 39 0.00084 30.8 0.6 20 857-876 7-29 (74)
2 PF13186 SPASM: Iron-sulfur cl 9.8 90 0.002 24.1 -0.2 38 830-875 26-63 (64)
3 PF12820 BRCT_assoc: Serine-ri 9.6 2.2E+02 0.0047 29.3 2.3 88 136-235 23-121 (165)
4 COG0523 Putative GTPases (G3E 9.5 1.2E+02 0.0025 33.0 0.4 7 870-876 60-66 (323)
5 COG0761 lytB 4-Hydroxy-3-methy 8.8 1.6E+02 0.0035 32.5 1.1 32 495-526 91-122 (294)
6 COG2265 TrmA SAM-dependent met 8.3 1.5E+02 0.0033 33.3 0.7 30 847-876 50-79 (432)
7 KOG3802 Transcription factor O 7.5 1.7E+02 0.0037 33.4 0.6 14 854-868 288-301 (398)
8 PF09111 SLIDE: SLIDE; InterP 6.4 1.2E+02 0.0026 29.0 -1.1 23 729-751 77-99 (118)
9 PF15085 NPFF: Neuropeptide FF 5.5 1.5E+02 0.0033 28.8 -0.9 39 587-625 37-75 (110)
10 PRK12360 4-hydroxy-3-methylbut 5.2 3.1E+02 0.0068 29.6 1.1 33 494-526 92-124 (281)
No 1
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=21.67 E-value=39 Score=30.84 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=15.9
Q ss_pred ccccccCCCCcccc---ccceee
Q 002796 857 TSKEKRKPRSSLFT---TCMCCT 876 (880)
Q Consensus 857 ~sk~K~K~RSSLF~---~CmCCa 876 (880)
+.|+|||+|+.+=. .||=|-
T Consensus 7 ~Krrkrk~~t~v~~~~d~c~tCS 29 (74)
T PF05077_consen 7 KKRRKRKPKTTVDDEEDDCTTCS 29 (74)
T ss_pred chhcccCCCceeecCCCCccchh
Confidence 56799999999877 687774
No 2
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=9.79 E-value=90 Score=24.10 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=22.3
Q ss_pred CcccccchhhcccchhhccccchhhhcccccccCCCCcccccccee
Q 002796 830 PQVHGNNAAAKREDKESSNLHAKEVTATSKEKRKPRSSLFTTCMCC 875 (880)
Q Consensus 830 ~~~q~n~~A~KKa~ke~~Ns~t~eV~s~sk~K~K~RSSLF~~CmCC 875 (880)
.-..+|. +...+++||+... +..++..... ++..|.-|
T Consensus 26 ~~~~Gni---~~~l~eiw~s~~~----~~~r~~~~~~-~~~~C~~C 63 (64)
T PF13186_consen 26 EFKIGNI---EDSLEEIWNSPKF----REFRKRHKKN-NFEPCKNC 63 (64)
T ss_pred CeEEeec---CCCHHHHHCCHHH----HHHHHHHhCC-CCCcCCCC
Confidence 3445664 4578999988655 2222222222 88888776
No 3
>PF12820 BRCT_assoc: Serine-rich domain associated with BRCT
Probab=9.59 E-value=2.2e+02 Score=29.29 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=49.4
Q ss_pred CCccccCCcccchhhhhccCCC-CCCCCCCCCcccccccchhhhccccccCCCCCCccccccccCCCCccc---------
Q 002796 136 GNNIVPVSEDKDYQEKEIDSFP-SGVPKEAEDPHIVNQISDEREQETEVVPPAESPKFEVKTNTEEGSEVC--------- 205 (880)
Q Consensus 136 ~N~~~Pa~E~kDyhEKv~~~l~-sdd~k~agD~h~~nQ~SDe~eq~~ev~P~~~SPk~e~ks~~~~g~~d~--------- 205 (880)
..|-||-+--+---.||-+||- ||+---+.|.|+...-|+-+. .-+- ++ ++++.|- -+
T Consensus 23 ~~qdv~witlnSSIqKVNEWfSRSde~ltSd~s~d~~sesnae~-----a~al-----e~-p~~~dg~-S~sSeK~dl~a 90 (165)
T PF12820_consen 23 DSQDVPWITLNSSIQKVNEWFSRSDEMLTSDDSCDRRSESNAEV-----AGAL-----EV-PNEVDGY-SGSSEKIDLMA 90 (165)
T ss_pred CcccCcchhhhhHHHHHHHHHhccCCccccCCCCCCcccccccc-----cccc-----cC-CcccccC-ccccccccccC
Confidence 3344777777777899999986 455556677777665554443 2211 11 3444441 11
Q ss_pred -cCCCCCCCCCCchhhhhhhhhccccccccc
Q 002796 206 -DTQPTSPSKHSEHQEIQQESNLKENQLQIS 235 (880)
Q Consensus 206 -~~qPaS~s~~~e~~E~q~ESnle~~~L~~s 235 (880)
+.|-|-.-+-.----++.|||+|+++.|-.
T Consensus 91 sdp~~al~~~ser~~sKpvesnIeDKIFGKT 121 (165)
T PF12820_consen 91 SDPHDALICESERVCSKPVESNIEDKIFGKT 121 (165)
T ss_pred CCCCcceeeccccccCCcccccccceecchh
Confidence 111111111122224788999999999843
No 4
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=9.53 E-value=1.2e+02 Score=33.01 Aligned_cols=7 Identities=57% Similarity=1.848 Sum_probs=5.4
Q ss_pred cccceee
Q 002796 870 TTCMCCT 876 (880)
Q Consensus 870 ~~CmCCa 876 (880)
.-||||+
T Consensus 60 nGCICCT 66 (323)
T COG0523 60 NGCICCT 66 (323)
T ss_pred CceEEEe
Confidence 4588887
No 5
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=8.84 E-value=1.6e+02 Score=32.46 Aligned_cols=32 Identities=22% Similarity=0.072 Sum_probs=29.4
Q ss_pred ccccccccCCCCChhhHHHhhccCCeeeccCC
Q 002796 495 GVEDFICCGGNKDCTEEAKVAKNGGLVDEHSN 526 (880)
Q Consensus 495 gv~d~~c~~~nkdcqEeAKv~eNgy~Vdl~~~ 526 (880)
-++|.-||-+.|--++=+|.++.||+|.|+-.
T Consensus 91 ~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~ 122 (294)
T COG0761 91 KVIDATCPLVTKVHKEVERYAREGYEIILIGH 122 (294)
T ss_pred EEEecCCCcchHHHHHHHHHHhCCCEEEEEcc
Confidence 48999999999999999999999999999864
No 6
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=8.29 E-value=1.5e+02 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=23.0
Q ss_pred ccccchhhhcccccccCCCCccccccceee
Q 002796 847 SNLHAKEVTATSKEKRKPRSSLFTTCMCCT 876 (880)
Q Consensus 847 ~Ns~t~eV~s~sk~K~K~RSSLF~~CmCCa 876 (880)
|--.-+++-.+|..|.+++-..|+.|++|.
T Consensus 50 ~~a~~~~i~~~Sp~R~~~~c~~~g~cggC~ 79 (432)
T COG2265 50 AEAKLVKVLEASPDRVDPPCPHFGRCGGCQ 79 (432)
T ss_pred eeeEeeeeccCChhhcCCCCcccccccccc
Confidence 333344455578888999999999999996
No 7
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=7.46 E-value=1.7e+02 Score=33.41 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=10.3
Q ss_pred hhcccccccCCCCcc
Q 002796 854 VTATSKEKRKPRSSL 868 (880)
Q Consensus 854 V~s~sk~K~K~RSSL 868 (880)
|++.+ ||||+|+||
T Consensus 288 i~a~~-RkRKKRTSi 301 (398)
T KOG3802|consen 288 IGAQS-RKRKKRTSI 301 (398)
T ss_pred hhccc-cccccccce
Confidence 44444 888999997
No 8
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=6.35 E-value=1.2e+02 Score=28.97 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=17.8
Q ss_pred ccccccccccccccccccccccc
Q 002796 729 NTQAQIQKSPSFDLDLRIEARTE 751 (880)
Q Consensus 729 n~~~qm~KsPSFd~dLriEaR~e 751 (880)
.|+.+||.+|-|-||.-+-+|+.
T Consensus 77 ~Ik~~Ir~~p~FrFDwf~kSRt~ 99 (118)
T PF09111_consen 77 KIKQEIRESPLFRFDWFFKSRTP 99 (118)
T ss_dssp HHHHHHHH-CGGCT-HHHHTS-H
T ss_pred HHHHHHHhCCCcccchhcccCCH
Confidence 47889999999999999999874
No 9
>PF15085 NPFF: Neuropeptide FF
Probab=5.48 E-value=1.5e+02 Score=28.83 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=26.0
Q ss_pred CCchhhhhcCCccCCcccccccCCCCCcccccccccccc
Q 002796 587 ENSKDARENGEQCTPPVEQEVSLTKAPLSLFQPQDNQQN 625 (880)
Q Consensus 587 gn~~eer~~gEq~tp~veae~~lp~aPaslfQ~Qd~qq~ 625 (880)
.+..+.+--|..+.-..++..-...+|+.|||||----+
T Consensus 37 ~~~~d~~~~~sllralL~~~qR~gRspa~LfQPQRFGR~ 75 (110)
T PF15085_consen 37 DNRQDAQTPGSLLRALLQAMQRPGRSPAFLFQPQRFGRN 75 (110)
T ss_pred CcccccccHHHHHHHHHHhcccCCCCcccccCccccCCC
Confidence 445555555555555556666667789999999975443
No 10
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=5.23 E-value=3.1e+02 Score=29.59 Aligned_cols=33 Identities=12% Similarity=-0.104 Sum_probs=28.6
Q ss_pred cccccccccCCCCChhhHHHhhccCCeeeccCC
Q 002796 494 EGVEDFICCGGNKDCTEEAKVAKNGGLVDEHSN 526 (880)
Q Consensus 494 Egv~d~~c~~~nkdcqEeAKv~eNgy~Vdl~~~ 526 (880)
=.++|.-||-+-+--..=.+..++||.|.++-.
T Consensus 92 ~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~ 124 (281)
T PRK12360 92 LEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGD 124 (281)
T ss_pred CeEEeCCCccchHHHHHHHHHHhCCCEEEEEcC
Confidence 358999999999988788889999999999864
Done!