Query 002796
Match_columns 880
No_of_seqs 8 out of 10
Neff 1.9
Searched_HMMs 29240
Date Tue Mar 26 17:45:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002796.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1511-1515//hhsearch_pdb/002796hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9y_A Imitation switch protei 1.0 1 1 13.3 -0.9 23 729-751 256-278 (374)
2 1ofc_X ISWI protein; nuclear p 1.0 1 1 12.2 -0.9 23 729-751 240-262 (304)
3 3kh0_A Ralgds, ralgef, RAL gua 1.0 1 1 11.7 0.3 85 643-747 17-109 (140)
4 3abq_B Ethanolamine ammonia-ly 1.0 1 1 11.4 -2.3 26 565-590 70-95 (306)
5 4am6_A Actin-like protein ARP8 1.0 1 1 11.3 -1.8 51 567-621 330-390 (655)
6 1ef5_A RGL; RAS-binding domain 1.0 1 1 10.8 1.0 23 724-746 79-101 (103)
7 1lfd_A Ralgds; RAL, effector i 1.0 1 1 10.5 0.3 22 724-745 64-85 (87)
8 1rax_A Protein (RA-domain of R 1.0 1 1 10.4 0.3 78 647-747 24-112 (115)
9 2ia1_A BH3703 protein; unknown 1.0 1 1 9.9 0.7 15 811-825 160-174 (178)
10 2qkw_A Avirulence protein; thr 1.0 1 1 9.8 -2.2 30 268-297 43-72 (164)
No 1
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=1.00 E-value=1 Score=13.27 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44302233555453322011232
Q 002796 729 NTQAQIQKSPSFDLDLRIEARTE 751 (880)
Q Consensus 729 n~~~qm~KsPSFd~dLriEaR~e 751 (880)
.|+..||.+|-|-||.-|-+|+.
T Consensus 256 ~Ir~~Ir~~p~FrFDwF~kSRT~ 278 (374)
T 2y9y_A 256 LVRDEIRDCPLFELDFYFRSRTP 278 (374)
T ss_dssp HHHHHHHHCSGGGSCHHHHTCCH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCH
T ss_conf 99999984942221288734999
No 2
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=1.00 E-value=1 Score=12.25 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44302233555453322011232
Q 002796 729 NTQAQIQKSPSFDLDLRIEARTE 751 (880)
Q Consensus 729 n~~~qm~KsPSFd~dLriEaR~e 751 (880)
.|+..||.+|-|-||.-+-+||-
T Consensus 240 ~Ir~~Ir~~p~FrFDwf~kSRTp 262 (304)
T 1ofc_X 240 ELRAAIRASPQFRFDWFIKSRTA 262 (304)
T ss_dssp HHHHHHHHCGGGTTCHHHHTCCH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCH
T ss_conf 99999872930444589854899
No 3
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=1.00 E-value=1 Score=11.74 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCCCCCCCEEEECCCCCCCC----HHHHCC----HHHHHHHHCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCHHHHH
Q ss_conf 34466564587216994100----021002----1345653003897311102353104400130013455677357773
Q 002796 643 LKPEINGEFLVTDGSPFDSK----KSMAET----LTPVAESAIEKPDQDISQHTAETMMAPAEANTQVNNVSEQNADAQE 714 (880)
Q Consensus 643 Lkpe~~gEFlv~k~S~~da~----~~~~et----l~~~vEla~~KP~qe~sq~~~~t~mA~ae~~tet~~~p~g~~eaQE 714 (880)
+-..-..+|.++++|-++.. ++|.=| ...++.-||+|-..+...--. -.-+-+.|.|. |
T Consensus 17 ~~~qq~~d~~IIRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~---------y~LvQ~Lp~~k-E--- 83 (140)
T 3kh0_A 17 QGNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPED---------YELLQILSDDR-K--- 83 (140)
T ss_dssp CCSCSSSCEEEEEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGG---------EEEEEEEETTE-E---
T ss_pred CCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHC---------EEEEEECCCCC-E---
T ss_conf 5578899768999999748994888888641665579999999982889776103---------38999858997-6---
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 302420234787654430223355545332201
Q 002796 715 SLGRLSTESNSNNSNTQAQIQKSPSFDLDLRIE 747 (880)
Q Consensus 715 svgr~StESn~~nsn~~~qm~KsPSFd~dLriE 747 (880)
| --|+|.|.-.-|-.|..|||-||--
T Consensus 84 ----L---~IPd~ANVFYAM~~sa~~dFvLR~k 109 (140)
T 3kh0_A 84 ----L---KIPENANVFYAMNSTANYDFVLKKR 109 (140)
T ss_dssp ----E---ECCTTCBHHHHSCTTSCCEEEEEEC
T ss_pred ----E---ECCCCCCEEEEECCCCCCCEEEEEC
T ss_conf ----8---2589873588865788854798554
No 4
>3abq_B Ethanolamine ammonia-lyase light chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_B* 3abr_B* 3abs_B* 3any_B* 3ao0_B*
Probab=1.00 E-value=1 Score=11.36 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 20000114899764103544567864
Q 002796 565 EASEEGQVFEEAEDKTKTSYGNENSK 590 (880)
Q Consensus 565 E~~~E~qivEei~eKte~sya~gn~~ 590 (880)
..|..+-.+...+..|-+-.|+|..-
T Consensus 70 ~~p~~~~~w~~Lr~~T~ARIglGRaG 95 (306)
T 3abq_B 70 ENPHRADVLTELRRSTVARVCTGRAG 95 (306)
T ss_dssp SSCSCHHHHHHHHHTCSSCCSCCCBT
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 99689889999984585007615768
No 5
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=1.00 E-value=1 Score=11.31 Aligned_cols=51 Identities=27% Similarity=0.255 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHH-------HHCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011489976410354456786454-------3048---7448743112237889754566663
Q 002796 567 SEEGQVFEEAEDKTKTSYGNENSKDA-------RENG---EQCTPPVEQEVSLTKAPLSLFQPQD 621 (880)
Q Consensus 567 ~~E~qivEei~eKte~sya~gn~~ee-------r~~g---Eq~tp~veae~~lp~aPaslfQ~Qd 621 (880)
..+..+++.||||.-|-. .-++.. |..+ +..+.-+-.|.++ ||.+||+|.=
T Consensus 330 ~~e~eiVrdIKEk~CyVs--~~Di~~q~~~f~~r~P~~~~~ky~i~vgdErfl--aPe~lF~Pei 390 (655)
T 4am6_A 330 KHGWLLAERLKKNFTTFQ--DADVAVQLYNFMNRSPNQPTEKYEFKLFDEVML--APLALFFPQI 390 (655)
T ss_dssp HHHHHHHHHHHHHHCCCC--GGGCCSEEEEEEECCSSSCEEEEEEEESSHHHH--HHHGGGSTHH
T ss_pred CCHHHHHHHHHHHEEEEC--CCCHHHHHHCCEECCCCCCCCCEEEEECCEEHH--CCHHCCCHHH
T ss_conf 336999999988659970--654311321123216888886239998871000--7341079545
No 6
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=1.00 E-value=1 Score=10.82 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78765443022335554533220
Q 002796 724 NSNNSNTQAQIQKSPSFDLDLRI 746 (880)
Q Consensus 724 n~~nsn~~~qm~KsPSFd~dLri 746 (880)
-|+|.|.-.-|-.++.|||-||-
T Consensus 79 iPd~aNVFYAm~~~~~~~F~LR~ 101 (103)
T 1ef5_A 79 IPDSANVFYAMNSQVNFDFILRK 101 (103)
T ss_dssp SSCCCCTTTTTCCCSCEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCEEEEE
T ss_conf 58976268997587773379731
No 7
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=1.00 E-value=1 Score=10.49 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7876544302233555453322
Q 002796 724 NSNNSNTQAQIQKSPSFDLDLR 745 (880)
Q Consensus 724 n~~nsn~~~qm~KsPSFd~dLr 745 (880)
-|+|.|.-..|-.+..|||=||
T Consensus 64 iPd~aNvfYAm~~~~~~~FvLR 85 (87)
T 1lfd_A 64 IPENANVFYAMNSAANYDFILK 85 (87)
T ss_dssp CCTTSBHHHHSCTTSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCCEEEE
T ss_conf 5888617899757777336872
No 8
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=1.00 E-value=1 Score=10.42 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCCCEEEECCCCCCCC----HHHHCC----HHHHHHHHCCCCCCCCC---HHHHHHCCCCHHHCCCCCCCCCCCHHHHHH
Q ss_conf 6564587216994100----021002----13456530038973111---023531044001300134556773577733
Q 002796 647 INGEFLVTDGSPFDSK----KSMAET----LTPVAESAIEKPDQDIS---QHTAETMMAPAEANTQVNNVSEQNADAQES 715 (880)
Q Consensus 647 ~~gEFlv~k~S~~da~----~~~~et----l~~~vEla~~KP~qe~s---q~~~~t~mA~ae~~tet~~~p~g~~eaQEs 715 (880)
...+|.++.+|-++.. ++|.=| ...++.-||.|-..+.. .|.. +-+.|.|.
T Consensus 24 q~~d~~IIRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L------------~Q~Lp~~k------ 85 (115)
T 1rax_A 24 QVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYEL------------LQILSDDR------ 85 (115)
T ss_dssp CSSCEEEEEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEE------------EEECSSSC------
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEE------------EEECCCCC------
T ss_conf 899749999998659995888899842777678999999981899888010289------------99869997------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02420234787654430223355545332201
Q 002796 716 LGRLSTESNSNNSNTQAQIQKSPSFDLDLRIE 747 (880)
Q Consensus 716 vgr~StESn~~nsn~~~qm~KsPSFd~dLriE 747 (880)
-| --|+|.|.-.-|-.+..|||-||--
T Consensus 86 --EL---~iPd~aNVFYAm~~s~~~dFvLR~r 112 (115)
T 1rax_A 86 --KL---KIPENANVFYAMNSTANYDFVLKKR 112 (115)
T ss_dssp --EE---EECTTSCHHHHSCTTSCCEEEEEEC
T ss_pred --EE---ECCCCCCEEEEECCCCCCCEEEEEC
T ss_conf --68---2589862689975777732797543
No 9
>2ia1_A BH3703 protein; unknown function, structural genomics, PSI, protein structur initiative; 1.59A {Bacillus halodurans} SCOP: d.359.1.1 PDB: 3i0t_A
Probab=1.00 E-value=1 Score=9.85 Aligned_cols=15 Identities=47% Similarity=0.572 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 688654432139868
Q 002796 811 KTPFLGFLKEEGEAP 825 (880)
Q Consensus 811 rtP~LgfLKee~EA~ 825 (880)
|-|||-+||+++-.|
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (178)
T 2ia1_A 160 RYPFLEPLKEEEGHH 174 (178)
T ss_dssp CCGGGSCC-----CC
T ss_pred CCCCCCCCHHHHCCC
T ss_conf 476445330221555
No 10
>2qkw_A Avirulence protein; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Pseudomonas syringae} SCOP: a.8.8.1 PDB: 1r5e_A
Probab=1.00 E-value=1 Score=9.76 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 323489999935563104899986787753
Q 002796 268 LQEFGDSKFDQPELASIHVDPPTQDSNNSL 297 (880)
Q Consensus 268 ~q~~~~~kFDQ~El~~ih~dps~~ds~ns~ 297 (880)
+-+..++--+||+|+..-+-++..++.|.|
T Consensus 43 L~eaagLpr~qh~Fi~n~ap~sLR~~~n~L 72 (164)
T 2qkw_A 43 LAESAGLPRDQHEFVSSQAPQSLRNRYNNL 72 (164)
T ss_dssp HHHHCCCCHHHHTTTSSSCCSSGGGHHHHH
T ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 888619987778886168988999998799
Done!