Query 002796
Match_columns 880
No_of_seqs 8 out of 10
Neff 1.9
Searched_HMMs 13730
Date Tue Mar 26 17:50:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002796.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1511-1515//hhsearch_scop/002796hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i9wa2 g.74.1.1 (A:1-39) Hypo 20.8 11 0.00081 14.0 0.3 10 755-764 20-29 (39)
2 d2qkwa1 a.8.8.1 (A:29-129) Avi 10.5 11 0.00083 14.0 -1.9 33 268-300 15-47 (101)
3 d1ofcx2 a.4.1.13 (X:851-978) S 9.4 21 0.0015 12.5 -0.9 22 730-751 78-99 (128)
4 d2i5nm1 f.26.1.1 (M:1-323) M ( 7.4 48 0.0035 10.5 1.0 38 783-823 2-43 (323)
5 d2o3la1 a.69.4.1 (A:14-95) Hyp 6.6 43 0.0031 10.8 -0.3 18 455-472 63-80 (82)
6 d1ef5a_ d.15.1.5 (A:) Rgl {Mou 5.5 63 0.0046 9.9 1.0 57 670-746 30-86 (88)
7 d1p8ba_ g.3.6.4 (A:) Pab1, sub 5.4 63 0.0046 9.8 0.8 19 778-796 7-26 (37)
8 d2imja1 d.17.4.23 (A:5-159) Hy 5.1 54 0.004 10.2 -0.5 29 828-856 7-35 (155)
9 d1g5ta_ c.37.1.11 (A:) ATP:cor 3.9 96 0.007 8.8 -0.0 10 369-378 8-17 (157)
10 d1lfda_ d.15.1.5 (A:) Ral guan 3.7 1E+02 0.0074 8.7 0.3 21 725-745 65-85 (87)
No 1
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=20.78 E-value=11 Score=14.04 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=6.1
Q ss_pred CCCCEEECCC
Q ss_conf 9960330456
Q 002796 755 RTPLLYHDKT 764 (880)
Q Consensus 755 qTPLLy~DKT 764 (880)
-|||||+|--
T Consensus 20 s~pllyqdcc 29 (39)
T d2i9wa2 20 STPLLYQDCC 29 (39)
T ss_dssp SCCCBGGGTT
T ss_pred CCHHHHHHHC
T ss_conf 3206777612
No 2
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=10.50 E-value=11 Score=13.96 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=25.9
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 323489999935563104899986787753333
Q 002796 268 LQEFGDSKFDQPELASIHVDPPTQDSNNSLHIH 300 (880)
Q Consensus 268 ~q~~~~~kFDQ~El~~ih~dps~~ds~ns~~~s 300 (880)
+-++.++--|||||.+-.+-+|..++.|.|-.|
T Consensus 15 laesaglprdqhefissqap~slr~~ynnlysh 47 (101)
T d2qkwa1 15 LAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSH 47 (101)
T ss_dssp HHHHCCCCHHHHTTTSSSCCSSGGGHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 998549982077887500829999988668887
No 3
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.39 E-value=21 Score=12.54 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4302233555453322011232
Q 002796 730 TQAQIQKSPSFDLDLRIEARTE 751 (880)
Q Consensus 730 ~~~qm~KsPSFd~dLriEaR~e 751 (880)
|+..||.+|-|-||.-+-+|+.
T Consensus 78 ir~~Ir~~p~FrFDwf~kSRt~ 99 (128)
T d1ofcx2 78 LRAAIRASPQFRFDWFIKSRTA 99 (128)
T ss_dssp HHHHHHHCGGGTTCHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHCCCCH
T ss_conf 9999974953120257616999
No 4
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=7.37 E-value=48 Score=10.50 Aligned_cols=38 Identities=29% Similarity=0.539 Sum_probs=22.0
Q ss_pred CCCC---CCCCCCCCCCCEEEEEECCCCCCCCCCCCCC-CCCCCC
Q ss_conf 2222---1112322343225675127643246886544-321398
Q 002796 783 RAQD---KLQCHAMPVEEKVVRMERNDSDKLKTPFLGF-LKEEGE 823 (880)
Q Consensus 783 ~~~d---~~q~~a~PVEEk~i~lersDSeKsrtP~Lgf-LKee~E 823 (880)
+||. |+|++. | +.-+.+.+++.+..+.|+.+. |-.=|+
T Consensus 2 eyqniftqvqv~g-p--~~~~~~~~~~~~r~~~~~~~~~lG~~G~ 43 (323)
T d2i5nm1 2 DYQTIYTQIQARG-P--HITVSGEWGDNDRVGKPFYSYWLGKIGD 43 (323)
T ss_dssp CGGGTSCSSBEEC-C--CCCCCCSSCGGGEECCCEECTTHHHHSC
T ss_pred CCCCCEEEEEECC-C--CCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 7442204322058-9--8888998884432477514467776455
No 5
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=6.65 E-value=43 Score=10.76 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHHHHCCCC
Q ss_conf 997743013554310134
Q 002796 455 PSDCLTHSCDESVKESKI 472 (880)
Q Consensus 455 p~~c~tq~cdes~~ESk~ 472 (880)
-..+|..|||++++++|+
T Consensus 63 ~G~D~~~f~deli~~~k~ 80 (82)
T d2o3la1 63 TGEDVASFADELVANAKT 80 (82)
T ss_dssp HCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHCCC
T ss_conf 598999999999975656
No 6
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.48 E-value=63 Score=9.85 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34565300389731110235310440013001345567735777330242023478765443022335554533220
Q 002796 670 TPVAESAIEKPDQDISQHTAETMMAPAEANTQVNNVSEQNADAQESLGRLSTESNSNNSNTQAQIQKSPSFDLDLRI 746 (880)
Q Consensus 670 ~~~vEla~~KP~qe~sq~~~~t~mA~ae~~tet~~~p~g~~eaQEsvgr~StESn~~nsn~~~qm~KsPSFd~dLri 746 (880)
..++.-||.|-..+.... +--+-+-+.|.+. -+ --|+|-|.-..|.-++.|||-||-
T Consensus 30 P~VI~rAl~Khnl~~~~~---------~~Y~L~QvLp~dk--------El---~iPd~aNvfYAm~~s~n~dF~LRk 86 (88)
T d1ef5a_ 30 PAVIQRAMSKHNLESDPA---------EEYELVQVISEDK--------EL---VIPDSANVFYAMNSQVNFDFILRK 86 (88)
T ss_dssp HHHHHHHTTTTTCCCCSS---------SSEEEEEECSSSC--------CE---ESSCCCCTTTTTCCCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCH---------HCEEEEEECCCCC--------EE---ECCCCCCEEEEECCCCCCCEEEEC
T ss_conf 799999999838997741---------0418999858997--------69---638997268996688775568741
No 7
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=5.44 E-value=63 Score=9.83 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=13.0
Q ss_pred CCCCCCCCC-CCCCCCCCCC
Q ss_conf 884112222-1112322343
Q 002796 778 GSPIARAQD-KLQCHAMPVE 796 (880)
Q Consensus 778 ~sP~~~~~d-~~q~~a~PVE 796 (880)
-||.-.+++ +-.|||||+-
T Consensus 7 CSPFemPPCgs~dCRCiP~g 26 (37)
T d1p8ba_ 7 CSPFEMPPCGTSACRCIPVG 26 (37)
T ss_dssp ECTTCSSGGGCSSSEEECCS
T ss_pred CCCCCCCCCCCCCCEEEEEE
T ss_conf 16663698899871688878
No 8
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=5.08 E-value=54 Score=10.19 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=18.5
Q ss_pred ECCCCCCCCHHHCCCCHHHCCCCCHHHHC
Q ss_conf 27765465011012020101421011200
Q 002796 828 VTPQVHGNNAAAKREDKESSNLHAKEVTA 856 (880)
Q Consensus 828 Vt~~~q~n~~A~KKa~ke~~Ns~t~eV~s 856 (880)
++|-...+-++--++++|.||++-++.-+
T Consensus 7 lPPFt~etA~~KVr~AEdaWNsrdP~~Va 35 (155)
T d2imja1 7 LPPFTRESAIEKIRLAEDGWNSRDPERVS 35 (155)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCHHEE
T ss_conf 88889899999999999866358800336
No 9
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=3.88 E-value=96 Score=8.82 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=7.0
Q ss_pred CCCCCCCCCE
Q ss_conf 2487767510
Q 002796 369 ETGNAKGEKS 378 (880)
Q Consensus 369 EvgN~~~kts 378 (880)
-+|||+||||
T Consensus 8 ytG~GKGKTT 17 (157)
T d1g5ta_ 8 FTGNGKGKTT 17 (157)
T ss_dssp EESSSSCHHH
T ss_pred EECCCCCCHH
T ss_conf 9579997089
No 10
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor, RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.73 E-value=1e+02 Score=8.69 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 876544302233555453322
Q 002796 725 SNNSNTQAQIQKSPSFDLDLR 745 (880)
Q Consensus 725 ~~nsn~~~qm~KsPSFd~dLr 745 (880)
|+|-|.-..|.-+..|||-||
T Consensus 65 Pd~aNVfYAm~ss~n~dFvLR 85 (87)
T d1lfda_ 65 PENANVFYAMNSAANYDFILK 85 (87)
T ss_dssp CTTSBHHHHSCTTSCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCEEEE
T ss_conf 798717999647767436872
Done!