Query 002799
Match_columns 879
No_of_seqs 209 out of 448
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:20:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 7E-271 1E-275 2247.1 56.3 822 4-878 38-871 (1018)
2 COG0189 RimK Glutathione synth 100.0 3.6E-30 7.8E-35 278.8 14.6 257 12-297 34-296 (318)
3 PF08443 RimK: RimK-like ATP-g 100.0 9.5E-29 2E-33 247.6 7.3 171 95-295 2-174 (190)
4 PRK10446 ribosomal protein S6 99.9 2.6E-25 5.7E-30 236.6 17.8 249 8-290 2-265 (300)
5 PLN02941 inositol-tetrakisphos 99.9 9.7E-25 2.1E-29 237.5 20.6 266 4-309 19-323 (328)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 1.6E-23 3.4E-28 216.0 16.0 246 9-290 2-256 (277)
7 TIGR02144 LysX_arch Lysine bio 99.9 4.6E-23 1E-27 214.8 15.7 236 22-290 11-254 (280)
8 PRK05246 glutathione synthetas 99.9 3.6E-23 7.8E-28 222.6 12.0 198 52-289 75-285 (316)
9 TIGR01380 glut_syn glutathione 99.9 6E-23 1.3E-27 221.1 11.9 199 52-289 74-284 (312)
10 PRK12458 glutathione synthetas 99.9 1.2E-21 2.6E-26 213.7 12.0 200 52-288 75-296 (338)
11 TIGR02291 rimK_rel_E_lig alpha 99.8 2.4E-18 5.1E-23 187.0 12.6 185 84-292 25-272 (317)
12 TIGR03103 trio_acet_GNAT GNAT- 99.7 2.4E-18 5.1E-23 198.7 10.2 178 84-292 285-524 (547)
13 PRK01372 ddl D-alanine--D-alan 99.7 1.6E-16 3.5E-21 168.2 21.4 247 6-290 4-270 (304)
14 PRK14016 cyanophycin synthetas 99.7 2.7E-17 5.9E-22 195.4 10.5 182 84-295 202-452 (727)
15 PF00328 His_Phos_2: Histidine 99.7 2.7E-16 5.9E-21 165.1 16.6 255 355-777 1-278 (347)
16 TIGR02068 cya_phycin_syn cyano 99.7 5.6E-17 1.2E-21 195.9 10.2 175 86-290 203-446 (864)
17 PRK02471 bifunctional glutamat 99.6 4.9E-16 1.1E-20 185.2 12.4 184 83-292 475-728 (752)
18 PRK14571 D-alanyl-alanine synt 99.6 6.5E-14 1.4E-18 149.2 18.0 244 19-301 17-276 (299)
19 TIGR01205 D_ala_D_alaTIGR D-al 99.5 1.3E-13 2.8E-18 146.7 18.0 209 55-289 62-284 (315)
20 TIGR01435 glu_cys_lig_rel glut 99.5 1.3E-14 2.9E-19 172.0 10.8 179 84-290 463-712 (737)
21 PRK14569 D-alanyl-alanine synt 99.5 4.5E-13 9.7E-18 143.5 16.5 246 6-290 3-265 (296)
22 PF02955 GSH-S_ATP: Prokaryoti 99.5 3.3E-14 7.2E-19 143.2 5.8 145 111-290 12-162 (173)
23 PRK06849 hypothetical protein; 99.4 3.7E-12 8E-17 140.5 14.3 194 57-287 77-273 (389)
24 PRK12767 carbamoyl phosphate s 99.4 4.7E-12 1E-16 135.2 14.0 193 57-288 70-268 (326)
25 TIGR01142 purT phosphoribosylg 99.3 6.4E-12 1.4E-16 137.3 13.5 198 57-287 63-269 (380)
26 PRK01966 ddl D-alanyl-alanine 99.3 1E-11 2.2E-16 135.1 14.8 206 56-289 81-300 (333)
27 PRK14572 D-alanyl-alanine synt 99.3 6.7E-12 1.4E-16 137.4 12.7 190 72-290 105-315 (347)
28 PRK14568 vanB D-alanine--D-lac 99.3 5.3E-11 1.2E-15 130.0 19.0 199 56-288 90-308 (343)
29 PRK14570 D-alanyl-alanine synt 99.3 7E-11 1.5E-15 131.0 18.0 208 56-289 87-315 (364)
30 PRK13790 phosphoribosylamine-- 99.2 4.5E-11 9.8E-16 132.6 12.2 191 71-288 41-248 (379)
31 PF13535 ATP-grasp_4: ATP-gras 99.2 1.7E-10 3.7E-15 111.9 10.8 162 93-288 1-177 (184)
32 TIGR01161 purK phosphoribosyla 99.2 3.8E-10 8.3E-15 123.1 14.8 192 57-288 61-263 (352)
33 PF05770 Ins134_P3_kin: Inosit 99.1 2.2E-10 4.9E-15 124.7 12.2 260 4-302 5-301 (307)
34 PRK09288 purT phosphoribosylgl 99.1 2.1E-10 4.6E-15 126.1 11.8 198 56-288 75-283 (395)
35 PRK00885 phosphoribosylamine-- 99.1 4.6E-10 9.9E-15 125.3 11.6 205 57-288 63-286 (420)
36 PRK07206 hypothetical protein; 99.1 1.5E-09 3.3E-14 120.3 15.4 207 57-287 71-285 (416)
37 PRK06019 phosphoribosylaminoim 99.0 3.8E-09 8.3E-14 116.8 15.1 196 56-289 63-266 (372)
38 PRK05294 carB carbamoyl phosph 99.0 1.1E-09 2.3E-14 136.0 11.7 198 56-288 629-839 (1066)
39 PRK05586 biotin carboxylase; V 99.0 1.2E-09 2.5E-14 123.4 10.5 205 55-289 73-292 (447)
40 PRK08463 acetyl-CoA carboxylas 99.0 1.2E-09 2.6E-14 124.8 10.0 205 56-289 73-292 (478)
41 PRK02186 argininosuccinate lya 99.0 2.6E-09 5.7E-14 130.3 13.2 204 51-288 65-275 (887)
42 PRK07178 pyruvate carboxylase 99.0 1.8E-09 3.9E-14 123.1 10.8 203 56-289 73-291 (472)
43 PRK08462 biotin carboxylase; V 99.0 1.1E-09 2.3E-14 123.3 8.5 203 56-288 76-293 (445)
44 PF02655 ATP-grasp_3: ATP-gras 99.0 1.3E-09 2.8E-14 107.4 7.7 148 94-287 1-155 (161)
45 TIGR01369 CPSaseII_lrg carbamo 98.9 1.1E-08 2.5E-13 126.8 16.8 199 56-288 629-839 (1050)
46 PRK08654 pyruvate carboxylase 98.9 2.3E-09 4.9E-14 123.5 9.7 203 57-288 75-290 (499)
47 PRK08591 acetyl-CoA carboxylas 98.9 2.4E-09 5.2E-14 120.4 8.6 206 56-288 74-291 (451)
48 PRK06111 acetyl-CoA carboxylas 98.9 7.1E-09 1.5E-13 116.3 12.3 203 57-289 75-292 (450)
49 TIGR00877 purD phosphoribosyla 98.9 8.1E-09 1.8E-13 115.1 11.5 204 57-288 65-288 (423)
50 PF14397 ATPgrasp_ST: Sugar-tr 98.9 7.9E-09 1.7E-13 111.4 10.3 187 86-289 16-257 (285)
51 cd07061 HP_HAP_like Histidine 98.9 6.8E-09 1.5E-13 107.2 9.3 50 494-547 27-78 (242)
52 TIGR00514 accC acetyl-CoA carb 98.9 9.2E-09 2E-13 116.2 10.8 202 56-288 74-291 (449)
53 PRK06395 phosphoribosylamine-- 98.8 1.7E-08 3.7E-13 114.5 11.7 204 57-287 66-290 (435)
54 TIGR01235 pyruv_carbox pyruvat 98.8 8.5E-09 1.8E-13 128.5 9.2 198 56-288 74-291 (1143)
55 PLN02948 phosphoribosylaminoim 98.8 1.2E-07 2.6E-12 111.3 16.1 199 57-290 84-290 (577)
56 PRK14573 bifunctional D-alanyl 98.8 2.2E-07 4.7E-12 112.6 18.8 209 56-289 526-755 (809)
57 PF15632 ATPgrasp_Ter: ATP-gra 98.8 6.8E-08 1.5E-12 106.5 13.1 197 56-287 66-278 (329)
58 PRK12815 carB carbamoyl phosph 98.8 1.2E-07 2.6E-12 118.2 16.6 195 57-288 631-837 (1068)
59 PF07478 Dala_Dala_lig_C: D-al 98.7 3.5E-08 7.6E-13 101.5 9.5 159 103-290 1-175 (203)
60 PRK12833 acetyl-CoA carboxylas 98.7 4.2E-08 9.1E-13 111.9 10.3 205 56-289 77-295 (467)
61 PLN02257 phosphoribosylamine-- 98.7 9.3E-08 2E-12 108.7 12.6 194 68-287 72-287 (434)
62 PRK12999 pyruvate carboxylase; 98.7 5.4E-08 1.2E-12 121.7 10.2 204 56-288 78-295 (1146)
63 PRK06524 biotin carboxylase-li 98.6 1E-07 2.2E-12 109.8 10.7 185 72-287 117-320 (493)
64 PF02750 Synapsin_C: Synapsin, 98.6 2.7E-08 5.9E-13 102.2 5.3 168 86-291 1-179 (203)
65 PRK05294 carB carbamoyl phosph 98.6 5.1E-07 1.1E-11 112.6 16.0 197 56-287 82-301 (1066)
66 COG1821 Predicted ATP-utilizin 98.6 2.6E-07 5.7E-12 98.3 11.0 152 71-288 93-254 (307)
67 PLN02735 carbamoyl-phosphate s 98.6 4.1E-07 9E-12 113.7 14.6 198 57-289 650-875 (1102)
68 COG1181 DdlA D-alanine-D-alani 98.6 2.8E-07 6E-12 101.3 11.3 192 71-290 77-286 (317)
69 PLN02735 carbamoyl-phosphate s 98.6 1.1E-06 2.3E-11 110.1 17.2 197 56-287 98-318 (1102)
70 TIGR01369 CPSaseII_lrg carbamo 98.5 8.2E-07 1.8E-11 110.7 12.1 196 56-288 81-300 (1050)
71 PRK13789 phosphoribosylamine-- 98.4 4.9E-06 1.1E-10 94.5 16.3 206 57-289 69-294 (426)
72 TIGR02712 urea_carbox urea car 98.4 3.5E-06 7.5E-11 106.4 14.9 205 56-289 73-291 (1201)
73 PRK12815 carB carbamoyl phosph 98.3 9.1E-06 2E-10 101.7 16.8 207 56-299 82-310 (1068)
74 PF14398 ATPgrasp_YheCD: YheC/ 98.3 2.7E-06 5.8E-11 90.9 9.5 193 79-293 6-236 (262)
75 PRK05784 phosphoribosylamine-- 98.3 5.3E-06 1.2E-10 95.9 11.7 200 57-287 70-307 (486)
76 KOG1057 Arp2/3 complex-interac 98.1 3.5E-07 7.5E-12 107.7 -1.0 36 836-874 780-815 (1018)
77 COG0439 AccC Biotin carboxylas 97.8 4.4E-05 9.4E-10 87.8 8.4 198 56-287 74-290 (449)
78 PRK13278 purP 5-formaminoimida 97.8 0.00081 1.8E-08 75.5 17.0 175 84-290 111-312 (358)
79 COG2232 Predicted ATP-dependen 97.5 0.00033 7.1E-09 77.5 9.1 147 86-288 110-272 (389)
80 PF02786 CPSase_L_D2: Carbamoy 97.5 2.5E-05 5.3E-10 81.4 0.2 163 96-289 1-179 (211)
81 PRK13277 5-formaminoimidazole- 97.5 0.00049 1.1E-08 77.4 10.1 162 95-287 125-316 (366)
82 COG0027 PurT Formate-dependent 97.3 0.0011 2.3E-08 73.3 10.1 221 11-287 38-282 (394)
83 PF02222 ATP-grasp: ATP-grasp 97.0 0.0031 6.6E-08 64.3 8.8 149 104-287 1-158 (172)
84 KOG3895 Synaptic vesicle prote 96.7 0.0027 5.8E-08 70.8 6.4 199 77-318 181-394 (488)
85 COG0458 CarB Carbamoylphosphat 96.7 0.01 2.2E-07 67.6 10.6 194 56-292 70-293 (400)
86 PF01071 GARS_A: Phosphoribosy 96.2 0.027 5.8E-07 58.8 9.8 164 96-287 2-186 (194)
87 COG0026 PurK Phosphoribosylami 95.8 0.086 1.9E-06 59.8 11.8 194 72-304 76-279 (375)
88 PF14305 ATPgrasp_TupA: TupA-l 95.1 0.52 1.1E-05 50.5 14.4 178 91-287 15-215 (239)
89 COG3919 Predicted ATP-grasp en 94.5 0.11 2.3E-06 57.7 7.7 160 92-287 110-285 (415)
90 KOG3672 Histidine acid phospha 91.5 0.12 2.6E-06 58.8 2.6 62 496-564 179-244 (487)
91 COG0151 PurD Phosphoribosylami 91.1 0.39 8.4E-06 55.5 6.2 210 26-287 54-286 (428)
92 cd07040 HP Histidine phosphata 89.4 0.4 8.7E-06 45.3 3.9 41 491-543 28-71 (153)
93 COG1038 PycA Pyruvate carboxyl 89.0 0.59 1.3E-05 57.5 5.6 181 83-292 108-301 (1149)
94 KOG3720 Lysosomal & prostatic 87.7 0.55 1.2E-05 54.1 4.2 55 491-548 73-133 (411)
95 PF14243 DUF4343: Domain of un 85.4 7 0.00015 38.4 9.9 82 192-290 32-117 (130)
96 KOG0238 3-Methylcrotonyl-CoA c 84.7 1.9 4.1E-05 51.1 6.4 186 75-292 89-291 (670)
97 PF03133 TTL: Tubulin-tyrosine 79.2 0.99 2.1E-05 48.7 1.6 55 146-218 67-127 (292)
98 PRK10172 phosphoanhydride phos 76.7 2.1 4.5E-05 50.1 3.3 58 488-547 69-135 (436)
99 TIGR03162 ribazole_cobC alpha- 76.0 2.8 6E-05 41.5 3.6 38 491-542 26-66 (177)
100 PRK10172 phosphoanhydride phos 75.9 2 4.3E-05 50.2 2.9 21 352-372 30-50 (436)
101 COG4770 Acetyl/propionyl-CoA c 75.7 5 0.00011 48.3 6.0 182 83-293 102-296 (645)
102 KOG0369 Pyruvate carboxylase [ 75.5 4.3 9.3E-05 49.5 5.4 178 87-292 138-327 (1176)
103 KOG3720 Lysosomal & prostatic 68.3 3.4 7.3E-05 47.8 2.4 18 353-370 31-48 (411)
104 PHA02117 glutathionylspermidin 67.6 16 0.00034 42.5 7.6 65 146-228 309-379 (397)
105 cd07067 HP_PGM_like Histidine 67.0 6.3 0.00014 37.8 3.7 37 494-542 34-70 (153)
106 COG1759 5-formaminoimidazole-4 65.0 10 0.00023 43.0 5.3 38 96-155 124-161 (361)
107 TIGR01016 sucCoAbeta succinyl- 63.0 4.3 9.3E-05 46.1 2.0 42 98-152 6-48 (386)
108 PRK13463 phosphatase PhoE; Pro 62.8 8.3 0.00018 39.7 3.9 34 494-541 37-70 (203)
109 TIGR03848 MSMEG_4193 probable 62.8 8 0.00017 39.6 3.7 35 494-542 35-69 (204)
110 PRK03482 phosphoglycerate muta 59.6 10 0.00023 39.1 3.9 34 494-541 36-69 (215)
111 PF13549 ATP-grasp_5: ATP-gras 57.4 4.4 9.6E-05 43.2 0.8 47 96-155 11-57 (222)
112 PTZ00123 phosphoglycerate muta 57.4 11 0.00024 40.1 3.7 37 494-542 23-59 (236)
113 PRK15004 alpha-ribazole phosph 57.3 11 0.00024 38.5 3.6 34 494-541 35-68 (199)
114 PTZ00122 phosphoglycerate muta 56.4 12 0.00027 41.5 4.0 43 494-543 134-177 (299)
115 PRK10507 bifunctional glutathi 55.6 31 0.00066 42.4 7.4 66 146-228 529-600 (619)
116 PRK00696 sucC succinyl-CoA syn 53.7 7.1 0.00015 44.4 1.7 43 97-152 5-48 (388)
117 PF14403 CP_ATPgrasp_2: Circul 53.7 15 0.00032 43.3 4.3 192 6-235 185-429 (445)
118 PF00300 His_Phos_1: Histidine 52.5 11 0.00024 35.6 2.6 37 494-542 34-70 (158)
119 PRK14115 gpmA phosphoglyceromu 51.5 16 0.00035 39.3 3.9 37 494-542 35-71 (247)
120 PRK01112 phosphoglyceromutase; 49.8 18 0.00039 38.5 3.8 35 494-542 36-70 (228)
121 PRK15416 lipopolysaccharide co 48.6 19 0.00041 38.2 3.8 34 494-540 88-121 (201)
122 PRK10173 glucose-1-phosphatase 47.8 16 0.00035 42.5 3.4 52 495-547 80-133 (413)
123 PRK13462 acid phosphatase; Pro 46.0 19 0.0004 37.5 3.2 33 494-538 40-72 (203)
124 PF08442 ATP-grasp_2: ATP-gras 44.0 11 0.00023 39.9 1.1 42 99-153 6-48 (202)
125 cd02639 R3H_RRM R3H domain of 43.1 27 0.00059 30.5 3.2 34 235-268 11-44 (60)
126 PRK01295 phosphoglyceromutase; 42.7 28 0.0006 36.2 3.9 37 494-542 37-73 (206)
127 PLN00124 succinyl-CoA ligase [ 41.5 12 0.00026 43.8 1.0 24 97-120 32-55 (422)
128 PRK14118 gpmA phosphoglyceromu 40.1 29 0.00063 36.6 3.6 37 494-542 35-71 (227)
129 PTZ00322 6-phosphofructo-2-kin 40.1 25 0.00055 43.1 3.6 36 494-541 452-488 (664)
130 COG1181 DdlA D-alanine-D-alani 38.8 12 0.00025 42.2 0.4 84 132-228 75-160 (317)
131 PRK07238 bifunctional RNase H/ 37.3 33 0.00071 38.7 3.7 36 494-542 206-241 (372)
132 PRK14046 malate--CoA ligase su 36.7 18 0.00038 41.8 1.5 22 99-120 7-28 (392)
133 COG0406 phoE Broad specificity 34.4 28 0.0006 35.5 2.3 38 494-544 37-75 (208)
134 PRK10848 phosphohistidine phos 33.9 48 0.001 33.4 3.8 37 494-542 31-67 (159)
135 PRK10173 glucose-1-phosphatase 33.4 33 0.00071 40.0 3.0 21 352-372 27-47 (413)
136 smart00855 PGAM Phosphoglycera 33.1 31 0.00068 33.4 2.4 38 494-542 34-71 (155)
137 KOG2156 Tubulin-tyrosine ligas 33.0 9.6 0.00021 45.6 -1.4 72 111-216 283-360 (662)
138 TIGR00249 sixA phosphohistidin 29.7 40 0.00086 33.6 2.5 37 494-542 31-67 (152)
139 COG2062 SixA Phosphohistidine 24.1 98 0.0021 32.1 4.1 38 494-543 34-71 (163)
140 PF03133 TTL: Tubulin-tyrosine 23.0 98 0.0021 33.6 4.1 31 268-298 237-268 (292)
141 PRK14116 gpmA phosphoglyceromu 22.7 58 0.0013 34.4 2.3 36 494-541 36-71 (228)
142 KOG1382 Multiple inositol poly 22.1 72 0.0016 38.0 3.0 30 522-551 162-191 (467)
143 TIGR00640 acid_CoA_mut_C methy 21.7 60 0.0013 32.0 2.0 70 7-78 55-124 (132)
144 PRK14119 gpmA phosphoglyceromu 21.6 65 0.0014 34.0 2.4 37 494-542 36-72 (228)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=6.9e-271 Score=2247.12 Aligned_cols=822 Identities=54% Similarity=0.829 Sum_probs=746.0
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHHhccCCeEEEEeCCcccccCCCccCCCcceeeccccCCCcHHHHHHHHHhcCCc
Q 002799 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPF 83 (879)
Q Consensus 4 ~~~~~iGVCaM~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d~~IL~e~ve~wP~~D~lIsf~s~GfpL~kai~y~~lr~p~ 83 (879)
.++|+||||||++|++||||++||+||..+++|++|||+|+|||+|||||||.|||||||||+||||+||++|+++|+||
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPF 117 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPF 117 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCCe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002799 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (879)
Q Consensus 84 ~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (879)
+||||.||+++||||.||+||++.|||+|++.+++|++|++.++++++++|+++|||++|.||||||||+||||||||||
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYY 197 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYY 197 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEe
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCc
Q 002799 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (879)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke 243 (879)
|+|+|||++||||||||+||+|+|++ .+|+.|||||||||+|+|||||||||||+|+|||+|||||+||+|+||+||||
T Consensus 198 PsSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKE 276 (1018)
T KOG1057|consen 198 PSSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKE 276 (1018)
T ss_pred cCCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCCce
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCccccccchhhHHHHHHHHHHHHHHhhCCCCCCCCC
Q 002799 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIP 323 (879)
Q Consensus 244 ~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVNGwSFVK~n~kYYddcA~iL~~~~l~~~~~~~~~~~~ 323 (879)
+||||.||++||.||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++|++.+.+++..+.+|
T Consensus 277 vRYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP 356 (1018)
T KOG1057|consen 277 VRYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIP 356 (1018)
T ss_pred eeceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888889
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCccceEEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCccceeecc
Q 002799 324 PILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKS 403 (879)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vvaViRHgDRTPKQK~K~~~~~~~f~~l~~~~~~~~~~~e~kLk~ 403 (879)
+++||..+++ .++..+ +++++++|||||||||||||||||||||++|++++||+||++|+|++ ++|+|||+
T Consensus 357 ~~~p~~~~~~---~~~~v~-----~~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~ 427 (1018)
T KOG1057|consen 357 WSLPGIRNEK---VEPWVP-----TSSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKS 427 (1018)
T ss_pred CCCcccccCC---CCCcee-----cCCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCC
Confidence 8888877654 233444 35679999999999999999999999999999999999999999876 77999999
Q ss_pred hHhHHHHHHHHHhhccccCCCCCCCCchhhhhhhhhHHHHHHHHhcCCCCCCcce-eecchhhhhhhcccccccCCCcce
Q 002799 404 AVQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQCHLLLANLVSGQFID 482 (879)
Q Consensus 404 ~~qLq~~ld~~~~~l~~~~~~~~~~~~~e~~e~~~kl~ql~~vLe~~~~fsGinr-vQlKp~~~~~~~~~~~~~~~~~~~ 482 (879)
|.|||+|||++|.++++.+ ++++++.|...||+||++||||||||||||| |||||++| +..++++++.++..+
T Consensus 428 ~~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~-~~~k~se~e~~r~~~ 501 (1018)
T KOG1057|consen 428 ANQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKW-VYVKKSEGELEREPQ 501 (1018)
T ss_pred HHHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeeccc-cCCCCCccccccCcc
Confidence 9999999999999998754 2234445668899999999999999999999 99999999 555666666667788
Q ss_pred eEEEEecc----cch---HHHHHHHhc--CC-CCCCchhhhcccccccceEeecCCchHHHHHHHHHHhhhcccCCCCcc
Q 002799 483 FLIEQFYQ----DNG---VNEIAYWWG--SH-SEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPI 552 (879)
Q Consensus 483 ~lLIlKWG----hag---Ae~LG~~fR--Yp-~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~legeLtPI 552 (879)
++||+||| ||| ||||||+|| || |+|+|||||||||||||||||||||||||||||||||||+|||+||||
T Consensus 502 llliLKwGGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelTpi 581 (1018)
T KOG1057|consen 502 LLLILKWGGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPI 581 (1018)
T ss_pred eeEEeeeCCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhhccCCcHH
Confidence 99999999 999 999999999 55 779999999999999999999999999999999999999999999999
Q ss_pred ceeeEecCCCcccCCccchHHHHHHHHHHHHHHhcCCCccCCCCCCCCcCccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002799 553 LVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVR 632 (879)
Q Consensus 553 lv~lV~kd~~lLD~~~~a~~~m~~vK~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~l~~~~~~~~~ 632 (879)
|||||+||+.|||++++|+++|++||++||+|||.|.++ +++|+|+.. + |+|++++.+++++|+.++..++
T Consensus 582 LvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~-----~~e~~~~~~---~-P~~~~~l~~~ve~vk~~~k~~~ 652 (1018)
T KOG1057|consen 582 LVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREF-----TPEFDWPEL---M-PNPSEVLTQVVELVKNPVKVCD 652 (1018)
T ss_pred HHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcC-----CCccchhhc---C-CcHhHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999866 467899975 3 5999999999999999998887
Q ss_pred HHhhhhccccccCCCCCCCCChhhhhhcCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHhccccCcccCCCCCcch
Q 002799 633 QLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVY 712 (879)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~c~gE~~~L~~~RW~KL~~dF~~~k~~~fD~SKIpdiY 712 (879)
+.+.. ..++ ..++++.+|.+|+||+|+|+||++||+|||+|||+. +++||||||||||
T Consensus 653 e~~~~-------------~~~~--------~~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~DiSKIpdiY 710 (1018)
T KOG1057|consen 653 ENFAL-------------IEPL--------DHIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDISKIPDIY 710 (1018)
T ss_pred Hhhhc-------------cccc--------cceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCccccchHH
Confidence 65422 1122 247899999999999999999999999999999975 5999999999999
Q ss_pred hhhhhhhhcccccccccHHHHHHHHHHhcceecccccCCCchhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhcccc
Q 002799 713 DSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSSQ 792 (879)
Q Consensus 713 D~iKYD~lHN~~l~l~~l~eLY~~ak~LaD~V~PqEYGI~~~EKl~IG~~~~~pLL~KI~~DL~~~~~e~~~~~~~~~~~ 792 (879)
||||||+|||++|.++++.|||.+||.|||+|+||||||+++|||+||..+|.|||+||+.||+++++ +..+...++.
T Consensus 711 D~~KYD~~HN~~l~~~~~~ely~~ak~lad~vip~eYgi~~~~kl~I~~~~~~~ll~Ki~~dL~~~~e--~~~~et~~~~ 788 (1018)
T KOG1057|consen 711 DTIKYDLLHNRQLLLNGFDELYKYAKLLADIVIPQEYGINPQEKLKIGQGICTPLLGKILSDLVRTLE--LESAETKNRL 788 (1018)
T ss_pred hhhhHHhhcchhhhhccccHHHHHHHhhcccccccccCCCHHHhhhhhhhhcchhhhhhhHhhhcchh--hcchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 5666777776
Q ss_pred cccccccccc-ccCCCCCCccccccccccCCCCcCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeeeeechhHHH
Q 002799 793 DQVSKSTKTE-KEDKDYPPKLFIKADDTRRSSTTSDISMDQDDDDDKETQYRLDPKYANVKTPERHVRTRLYFTSVCIIY 871 (879)
Q Consensus 793 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~rL~p~ya~v~SP~RhVRTRLYFTSESHiH 871 (879)
++.+- ++.+ .-...|....+--++...+.-..++. ...+++.+|.+||++.+....++.||++||||||+|||||
T Consensus 789 ~p~~~-sp~~~~r~~lY~~sk~~v~sl~~~ryG~~~~---~~ln~~~~t~~~L~~~~~~d~~~e~~~~~rlyFtreshi~ 864 (1018)
T KOG1057|consen 789 NPVYL-SPRRHVRTRLYFTSKSHVHSLLLRRYGISDV---EKLNDGLLTSIRLYEQILNDPTSERHFHTRLYFTRESHIY 864 (1018)
T ss_pred Ccccc-ChhHHHHHHHhhhhHhhhhhhhhhhcCCchh---hhhcccchhceeechhhccCCcccccceeEEEeccchhhh
Confidence 66531 1111 11123333332222222222223222 2334567899999999999999999999999999999999
Q ss_pred HHHhhcc
Q 002799 872 IAVINTQ 878 (879)
Q Consensus 872 SLln~~~ 878 (879)
+|+|+++
T Consensus 865 ~l~nv~~ 871 (1018)
T KOG1057|consen 865 TLMNVIR 871 (1018)
T ss_pred hhhhHhh
Confidence 9999974
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.6e-30 Score=278.76 Aligned_cols=257 Identities=22% Similarity=0.261 Sum_probs=203.3
Q ss_pred eecCcccCChhHHHHHHHHhccCCeEEEEeCCcccccCCCccCCCcceeeccccCCCcH-HHHHHHHHhcCCcccCCchh
Q 002799 12 CVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEP 90 (879)
Q Consensus 12 CaM~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d~~IL~e~ve~wP~~D~lIsf~s~GfpL-~kai~y~~lr~p~~iNdl~~ 90 (879)
+.++.--++-++..+..+.....-.+++-+..+.+...+...-..+|+++.+-...+.. ..+++.++..|.++||+..+
T Consensus 34 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~ 113 (318)
T COG0189 34 AILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQS 113 (318)
T ss_pred EEEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHH
Confidence 33444444555555655555444456777888888888878888899999999888777 78888999999999999999
Q ss_pred hhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCCh
Q 002799 91 QHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGG 170 (879)
Q Consensus 91 q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG 170 (879)
...++||..+++.|+++|||+|.|+++.+. ++....-.+.++.|+|+||++|+ .|-|
T Consensus 114 i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~------------~~~~~~~~~~~g~pvVlKp~~Gs-----------~G~g 170 (318)
T COG0189 114 IRRCRNKLYTTQLLAKAGIPVPPTLITRDP------------DEAAEFVAEHLGFPVVLKPLDGS-----------GGRG 170 (318)
T ss_pred HHhhhhHHHHHHHHHhcCCCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEeeCCCC-----------Cccc
Confidence 999999999999999999999999999763 12223333455689999999999 6656
Q ss_pred HHHHHhhcCCCcccccccccccccC--cceEEeeccCC-CCceeEEEEECCceeE--EEeeeCCCCCCeeeecCCCCcee
Q 002799 171 MKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEVR 245 (879)
Q Consensus 171 ~~rLfrkign~sS~~~p~~~~~r~~--gsyIyQEFI~t-~G~DIKVytVG~~~vh--Ae~RKSP~~DG~vrrN~~gke~r 245 (879)
+- + +.+....+.--+...... ..+|.||||++ ++.|+||+++|+.+++ |++|.++ .|+||+|.|+|+..
T Consensus 171 V~-~---v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~~ 244 (318)
T COG0189 171 VF-L---VEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGRA 244 (318)
T ss_pred eE-E---ecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeeccccccc
Confidence 53 3 444441111111123333 46999999999 6688888888888888 8899886 89999999999999
Q ss_pred eeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCccccccchh
Q 002799 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYK 297 (879)
Q Consensus 246 ~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVNGwSFVK~n~k 297 (879)
.++.||++++++|.|||.++|..+|||||+++++|.||||||.-+-.++.-+
T Consensus 245 e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~sP~~~~~i~ 296 (318)
T COG0189 245 EPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNVSPTGKGEIE 296 (318)
T ss_pred cccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeCCCccccchh
Confidence 9999999999999999999999999999999999999999998665666533
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.95 E-value=9.5e-29 Score=247.56 Aligned_cols=171 Identities=30% Similarity=0.438 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHH
Q 002799 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (879)
Q Consensus 95 ~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (879)
.||..++++|+++|||+|.|.+++.. . +...+++-.+ ++|+|+||+.|. .|-|+. +
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~~~~~~--~-------~~~~~~~~~~---~~p~ViKp~~g~-----------~G~gV~-~ 57 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETRVTNSP--E-------EAKEFIEELG---GFPVVIKPLRGS-----------SGRGVF-L 57 (190)
T ss_dssp HBHHHHHHHHHHTT-----EEEESSH--H-------HHHHHHHHH-----SSEEEE-SB------------------E-E
T ss_pred CCHHHHHHHHHHCCcCCCCEEEECCH--H-------HHHHHHHHhc---CCCEEEeeCCCC-----------CCCEEE-E
Confidence 58999999999999999999999753 1 2333443221 589999999998 555553 3
Q ss_pred HhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH
Q 002799 175 FRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP 252 (879)
Q Consensus 175 frkign~sS~~~p~~~~~-r~~gsyIyQEFI~t-~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~ 252 (879)
++......+..+ .. ..+..+++||||+. .|.|+||||||+++++|+.|.++ +|+||+|.+.|+...++.|++
T Consensus 58 i~~~~~~~~~l~----~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~~ 131 (190)
T PF08443_consen 58 INSPDELESLLD----AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLPE 131 (190)
T ss_dssp EESHCHHHHHHH---------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----H
T ss_pred ecCHHHHHHHHH----HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCCH
Confidence 333322222222 21 24677899999999 66999999999999999999997 889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCccccccc
Q 002799 253 NEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295 (879)
Q Consensus 253 eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVNGwSFVK~n 295 (879)
+++++|.++++++|+++|||||+++++++||||||.++-++..
T Consensus 132 e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 132 EIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 9999999999999999999999999999999999999887654
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.93 E-value=2.6e-25 Score=236.55 Aligned_cols=249 Identities=20% Similarity=0.263 Sum_probs=181.7
Q ss_pred EEEEeecCcccCChhHHHHHHHHhccCCeEEEEeCCccc---ccCC-------CccCCCcceeeccccCC--CcHHHHHH
Q 002799 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVI---LEDP-------IEKWPICDCLIAFYSSG--YPLEKAES 75 (879)
Q Consensus 8 ~iGVCaM~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d~~I---L~e~-------ve~wP~~D~lIsf~s~G--fpL~kai~ 75 (879)
+|||-+.+....| -+.+++-+.+.| ++++++.-+.+ ++.. ......+|++|++.... +.-....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4677666655444 345555555555 66666654321 1111 12345689999875432 22244467
Q ss_pred HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccc
Q 002799 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHG 154 (879)
Q Consensus 76 y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~G 154 (879)
.++..+|+++|+..+..+++||..++++|+++|||+|+|.++... . +..+.++ .+ +.|+|+||++|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~~~~----~~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSP--D-------DTSDLIDMVG----GAPLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCH--H-------HHHHHHHHhC----CCCEEEEECCC
Confidence 888999999999999999999999999999999999999988532 0 1112221 11 47999999999
Q ss_pred cCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCC
Q 002799 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVD 232 (879)
Q Consensus 155 edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFI~t-~G~DIKVytVG~~~vhAe~RKSP~~D 232 (879)
. .|.|+. +++........++ .. ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~ 207 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--E 207 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--C
Confidence 7 555553 2221111111111 11 23457999999987 79999999999999999999886 6
Q ss_pred CeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCcc
Q 002799 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWS 290 (879)
Q Consensus 233 G~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVNGwS 290 (879)
|.|+.|.+.|+..+++.|+++.+++|.++++++|..++|||++.+.+++||+|||..+
T Consensus 208 ~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~~p 265 (300)
T PRK10446 208 GDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASP 265 (300)
T ss_pred CchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEECCC
Confidence 7899999988899999999999999999999999999999999997779999999754
No 5
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.93 E-value=9.7e-25 Score=237.50 Aligned_cols=266 Identities=20% Similarity=0.220 Sum_probs=193.0
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHHhccCCeEEEEeCCcccccCCCccCCCcceeeccccCCCcHHHHHHHHH-hcCC
Q 002799 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT-LRKP 82 (879)
Q Consensus 4 ~~~~~iGVCaM~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d~~IL~e~ve~wP~~D~lIsf~s~GfpL~kai~y~~-lr~p 82 (879)
.+..+||-|--.||.+|==-..++....+.| ++++.-..+. |++.=-.+|++|-+...-.=-....+|.. -.+.
T Consensus 19 ~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~----pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 19 QKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSR----PLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred CCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCC----CccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 3568999888888888766666777777665 6666555443 33322246999987643221234444443 4457
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCC-------CCCCCEEEEeccCCCcccccccccccee--eecCeeccCcEEEeecc
Q 002799 83 FLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFV--EVHGNRFWKPFVEKPVH 153 (879)
Q Consensus 83 ~~iNdl~~q~il~DR~~~~qiL~~~g-------IP~P~t~~~~r~~p~~~~~~~~e~~d~i--~v~g~~~~kPfVeKpv~ 153 (879)
.+||.++++..+.||..++++|++.| ||+|+++++.... ..+ ...-..++.|+|.||+.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~------------~al~~~~~~~~l~~P~V~KPl~ 161 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDE------------SSIPDAVALAGLKFPLVAKPLV 161 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHH------------HHHHHHHHHhcCCCCEEEeecc
Confidence 99999999999999999999999999 9999999997641 111 01123468999999999
Q ss_pred ccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC
Q 002799 154 GDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG 233 (879)
Q Consensus 154 GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG 233 (879)
|.. ++.|-|+ ..+.+..+.- . .+..|++||||+-+|.|+||||||++ ++|+.|+| .+
T Consensus 162 g~G--------ss~gh~m----~lv~~~~~L~-----~--l~~p~~lQEfVnh~g~d~RVfVvGd~-v~~~~R~S---~~ 218 (328)
T PLN02941 162 ADG--------SAKSHKM----SLAYDQEGLS-----K--LEPPLVLQEFVNHGGVLFKVYVVGDY-VKCVRRFS---LP 218 (328)
T ss_pred cCC--------Cccccce----EEecCHHHHH-----h--cCCcEEEEEecCCCCEEEEEEEECCE-EEEEEecC---Cc
Confidence 930 1133333 2232222211 1 24469999999999999999999999 59999998 56
Q ss_pred eee---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeC---CCcEEE
Q 002799 234 VVM---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRSYVC 284 (879)
Q Consensus 234 ~vr---rN~~gk----------------e~-------r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~---g~syV~ 284 (879)
.|+ .|++.| +. ..+...+++-+++|.++++++|+.++||||++.. ++.+|+
T Consensus 219 n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~Vi 298 (328)
T PLN02941 219 DVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVI 298 (328)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEE
Confidence 677 888866 32 4455667789999999999999999999999995 367899
Q ss_pred ecCCccccccchhhHHHHHHHHHHH
Q 002799 285 DVNGWSFVKNSYKYYDDAACVLRKM 309 (879)
Q Consensus 285 DVNGwSFVK~n~kYYddcA~iL~~~ 309 (879)
|||+++-+|+-..|+..-.+.|.++
T Consensus 299 dVN~fP~~k~~p~~~~~l~~~~~~~ 323 (328)
T PLN02941 299 DINYFPGYAKMPGYETVLTDFLLSL 323 (328)
T ss_pred EecCCCccccCCchHHHHHHHHHHH
Confidence 9999999999999996555444443
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.90 E-value=1.6e-23 Score=216.00 Aligned_cols=246 Identities=20% Similarity=0.237 Sum_probs=177.7
Q ss_pred EEEeecCcccCChhHHHHHHHHhccCCeEEEEeCCc---ccccCCCccCCCcceeeccccCCCcHHHHHHHHHhcCCccc
Q 002799 9 IGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDK---VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV 85 (879)
Q Consensus 9 iGVCaM~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d~---~IL~e~ve~wP~~D~lIsf~s~GfpL~kai~y~~lr~p~~i 85 (879)
|||++=.... =++.+.+.+.+.| +++.+|.-. +-++..-..||.+|+++.+...+..-..+.+.++..+.+++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6777654333 4455555665555 566666532 22222223489999999887444443467777888898899
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 002799 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (879)
Q Consensus 86 Ndl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (879)
|+..+..+++||+.++++|+++|||+|+|..+.... +...++. .++.|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~---------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPE---------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHH---------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 999999999999999999999999999999886420 1112222 24579999999986
Q ss_pred CCCChHHHHHhhcCCCcccccccccccc----cCcceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCC
Q 002799 166 SAGGGMKELFRKVGNRSSEFHPDVRRVR----REGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPD 240 (879)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~~~r----~~gsyIyQEFI~t-~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~ 240 (879)
.|.|+. + +.+...... -...++ ....||+||||+. .|.|+||+++|+++++++.|.. .+.|+.|.+
T Consensus 135 -~g~gv~-~---i~~~~~l~~-~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~ 205 (277)
T TIGR00768 135 -WGRLVS-L---ARDKQAAET-LLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLA 205 (277)
T ss_pred -CCCceE-E---EcCHHHHHH-HHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhh
Confidence 333332 1 111111000 000111 1357999999998 4699999999999999998873 577999999
Q ss_pred CCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeC-CCcEEEecCCcc
Q 002799 241 GKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGWS 290 (879)
Q Consensus 241 gke~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~-g~syV~DVNGwS 290 (879)
.|+...++.|+++.+++|.++++++|..+||||++.+. |++||+|||..+
T Consensus 206 ~g~~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~p 256 (277)
T TIGR00768 206 RGGKAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPNP 256 (277)
T ss_pred cCCeeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCCc
Confidence 88888899999999999999999999999999999985 489999999764
No 7
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.90 E-value=4.6e-23 Score=214.76 Aligned_cols=236 Identities=18% Similarity=0.196 Sum_probs=171.4
Q ss_pred hHHHHHHHHhccCCeEEE-EeCCc--ccccCCCccCCCcceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHH
Q 002799 22 PMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRR 98 (879)
Q Consensus 22 Pm~~IL~rL~~~~~f~~i-iF~d~--~IL~e~ve~wP~~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~ 98 (879)
.++.+..-|.+.| +++. +.-++ +-++++...|..||++|.+-..+.........++..+..++|+..+...++||.
T Consensus 11 ~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHH
Confidence 3566666676655 3332 33333 234556679999999998742222222445556788988999999999999999
Q ss_pred HHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhc
Q 002799 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (879)
Q Consensus 99 ~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki 178 (879)
.++++|+++|||+|.|.++... ++.... ...+++|+|+||..|. .|.|+. + +
T Consensus 90 ~~~~~l~~~gip~P~t~~~~~~------------~~~~~~-~~~~~~P~vvKP~~g~-----------~g~gv~-~---v 141 (280)
T TIGR02144 90 FTYLKLAKAGVPTPRTYLAFDR------------EAALKL-AEALGYPVVLKPVIGS-----------WGRLVA-L---I 141 (280)
T ss_pred HHHHHHHHCCcCCCCeEeeCCH------------HHHHHH-HHHcCCCEEEEECcCC-----------CcCCEE-E---E
Confidence 9999999999999999988532 111111 1234689999999986 333432 1 1
Q ss_pred CCCcccccc--ccccc--ccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHH
Q 002799 179 GNRSSEFHP--DVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE 254 (879)
Q Consensus 179 gn~sS~~~p--~~~~~--r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eE 254 (879)
.+....... ..... ..+..+|+||||+..|.|+||+++|+.+++++.|.+ +.|+.|.+.|+...++.++++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~ 217 (280)
T TIGR02144 142 RDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEV 217 (280)
T ss_pred CCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHH
Confidence 111110000 00001 124579999999987999999999999999999976 5699999888888899999999
Q ss_pred HHHHHHHHHHhCCceeEEEEEeeC-CCcEEEecCCcc
Q 002799 255 KQMAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGWS 290 (879)
Q Consensus 255 k~iA~ka~~afgq~VcGfDLLRs~-g~syV~DVNGwS 290 (879)
+++|.++++++|..++|||++.+. |++||+|||.++
T Consensus 218 ~~~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~~p 254 (280)
T TIGR02144 218 EELAVKAAEAVGGGVVAIDIFESKERGLLVNEVNHVP 254 (280)
T ss_pred HHHHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeCCc
Confidence 999999999999999999999984 579999999864
No 8
>PRK05246 glutathione synthetase; Provisional
Probab=99.89 E-value=3.6e-23 Score=222.60 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=152.7
Q ss_pred ccCCCcceeeccccCCCcH-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccc
Q 002799 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (879)
Q Consensus 52 e~wP~~D~lIsf~s~GfpL-----~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~ 126 (879)
-.||.+|+++.+...-|.. ...+++++.++..++|+......+.||+.+++++. ++|+|.++... .
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~--~--- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK--A--- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH--H---
Confidence 4578899999875444442 45788888889999999999999999999999765 89999987642 0
Q ss_pred cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcC-CCcccccccccccc--cCcceEEeec
Q 002799 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG-NRSSEFHPDVRRVR--REGSYIYEEF 203 (879)
Q Consensus 127 ~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig-n~sS~~~p~~~~~r--~~gsyIyQEF 203 (879)
...++++-. +|+|+||+.|+ +|.|+-+ .++-+ +..+.++ ... ....||+|+|
T Consensus 146 ----~~~~~~~~~-----~~vVlKP~~G~-----------~G~gV~~-i~~~~~~~~~~~~----~l~~~~~~~~lvQ~~ 200 (316)
T PRK05246 146 ----EIRAFRAEH-----GDIILKPLDGM-----------GGAGIFR-VKADDPNLGSILE----TLTEHGREPVMAQRY 200 (316)
T ss_pred ----HHHHHHHHC-----CCEEEEECCCC-----------CccceEE-EeCCCccHHHHHH----HHHHccCCeEEEEec
Confidence 122333322 38999999998 5555432 11100 0011111 122 2458999999
Q ss_pred cCC-CCceeEEEEECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCceeEEEEEeeC
Q 002799 204 MPT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 278 (879)
Q Consensus 204 I~t-~G~DIKVytVG~~~vh-Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---~afgq~VcGfDLLRs~ 278 (879)
|+. .+.|+||+++|++++| |+.|.++ .|+||+|.|.|+...++.||+++++||.+++ ++.|+.+||||++
T Consensus 201 I~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli--- 275 (316)
T PRK05246 201 LPEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI--- 275 (316)
T ss_pred cccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---
Confidence 998 6789999999999999 9999886 7899999999999999999999999999999 5779999999999
Q ss_pred CCcEEEecCCc
Q 002799 279 GRSYVCDVNGW 289 (879)
Q Consensus 279 g~syV~DVNGw 289 (879)
+.||+|||..
T Consensus 276 -~~~l~EvN~~ 285 (316)
T PRK05246 276 -GDYLTEINVT 285 (316)
T ss_pred -CCEEEEEeCC
Confidence 3589999954
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.88 E-value=6e-23 Score=221.10 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=152.8
Q ss_pred ccCCCcceeeccccCCCcH-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccc
Q 002799 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (879)
Q Consensus 52 e~wP~~D~lIsf~s~GfpL-----~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~ 126 (879)
-.|+.+|++|.+-...|.. ...+++++..+..++|+..+.....||..+++++. |+|.|++.+...
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~----- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKA----- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHH-----
Confidence 5688999999886554442 46788888999999999999999999999988763 899999875420
Q ss_pred cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc--cCcceEEeecc
Q 002799 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 204 (879)
Q Consensus 127 ~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyQEFI 204 (879)
+..++++-. .|+|+||+.|+ .|.|+.+ +......+..-+.... ....|++||||
T Consensus 145 ----~~~~~~~~~-----g~vVvKPl~G~-----------~G~gv~~----v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI 200 (312)
T TIGR01380 145 ----EIRAFLAEH-----GDIVLKPLDGM-----------GGEGIFR----LDPGDPNFNSILETMTQRGREPVMAQRYL 200 (312)
T ss_pred ----HHHHHHHHc-----CCEEEEECCCC-----------CCceEEE----EcCCCccHHHHHHHHHhccCCcEEEEecc
Confidence 122233312 28999999998 5555532 2111111110000111 24579999999
Q ss_pred CC-CCceeEEEEECCcee-EEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCceeEEEEEeeCC
Q 002799 205 PT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 279 (879)
Q Consensus 205 ~t-~G~DIKVytVG~~~v-hAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---~afgq~VcGfDLLRs~g 279 (879)
++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...+++||++++++|.+++ +++|+.+||||+|
T Consensus 201 ~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---- 274 (312)
T TIGR01380 201 PEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI---- 274 (312)
T ss_pred ccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe----
Confidence 98 789999999999975 59999886 7899999999999999999999999999998 7789999999999
Q ss_pred CcEEEecCCc
Q 002799 280 RSYVCDVNGW 289 (879)
Q Consensus 280 ~syV~DVNGw 289 (879)
++||+|||..
T Consensus 275 g~~v~EvN~~ 284 (312)
T TIGR01380 275 GGYLTEVNVT 284 (312)
T ss_pred CCEEEEEecC
Confidence 4799999964
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.86 E-value=1.2e-21 Score=213.71 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=148.2
Q ss_pred ccCCCcceeeccccCCCcH--HHHH--------HHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccC
Q 002799 52 EKWPICDCLIAFYSSGYPL--EKAE--------SYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 121 (879)
Q Consensus 52 e~wP~~D~lIsf~s~GfpL--~kai--------~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~ 121 (879)
-.|..+|+++.+-.-.|.. ...+ ++++..+.+++|+......+.||+..+++++ +++|.|++....
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 4577888888876444433 1222 2335678999999999999999999876544 799999988532
Q ss_pred CCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcC--CCcccccccccccccCcceE
Q 002799 122 PYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSYI 199 (879)
Q Consensus 122 p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig--n~sS~~~p~~~~~r~~gsyI 199 (879)
. +..++++-.| +.|+|+||++|+ .|.|+.+ +..-. |..+.++ .+...+.+|
T Consensus 151 -~-------~~~~~~~~~~---~~pvVvKPl~G~-----------gG~gV~~-v~~~~~~~~~~ile----~~~~~~~~i 203 (338)
T PRK12458 151 -E-------YIREFLEESP---GDKMILKPLQGS-----------GGQGVFL-IEKSAQSNLNQILE----FYSGDGYVI 203 (338)
T ss_pred -H-------HHHHHHHHcC---CCeEEEEECCCC-----------CccCeEE-EecCChhhHHHHHH----HHhhCCCEE
Confidence 0 1223332121 236999999997 5555532 11110 1111111 222356899
Q ss_pred EeeccCC-CCceeEEEEECCcee------EEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---CCce
Q 002799 200 YEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQAV 269 (879)
Q Consensus 200 yQEFI~t-~G~DIKVytVG~~~v------hAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~af---gq~V 269 (879)
+||||++ .+.|+||++||++++ ||+.|.+. .|+||+|.+-|+...++.||++++++|.+++.++ |+.+
T Consensus 204 vQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~~ 281 (338)
T PRK12458 204 AQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLFF 281 (338)
T ss_pred EEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCeE
Confidence 9999998 778999999999999 99999875 7999999998889999999999999999999988 9999
Q ss_pred eEEEEEeeCCCcEEEecCC
Q 002799 270 CGFDLLRCEGRSYVCDVNG 288 (879)
Q Consensus 270 cGfDLLRs~g~syV~DVNG 288 (879)
||||++ +++|+|||-
T Consensus 282 ~gVDli----~~~l~EIN~ 296 (338)
T PRK12458 282 VGLDIV----GDKLVEVNV 296 (338)
T ss_pred EeEEEE----CCEEEEEeC
Confidence 999999 468999993
No 11
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.76 E-value=2.4e-18 Score=187.00 Aligned_cols=185 Identities=18% Similarity=0.143 Sum_probs=133.6
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccccCcceeEE
Q 002799 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 162 (879)
Q Consensus 84 ~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~GedHni~IY 162 (879)
..|+=+-..++.||..+.++|.++|||+|+|.++....- ..++..+ +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~--------~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQA--------EVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchh--------hHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 467778888999999999999999999999998865310 1122222 222 247999999999
Q ss_pred eccCCCChHHHHHhhcCCCc------cc-----cccccc----cc-ccC--cceEEeeccCC-----------CCceeEE
Q 002799 163 YPSSAGGGMKELFRKVGNRS------SE-----FHPDVR----RV-RRE--GSYIYEEFMPT-----------GGTDVKV 213 (879)
Q Consensus 163 yp~~~GgG~~rLfrkign~s------S~-----~~p~~~----~~-r~~--gsyIyQEFI~t-----------~G~DIKV 213 (879)
+|.|+. +.+...+.. .. ++..+. .+ ... ..+.|+||+-. .+.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 888874 333221110 00 000000 00 112 22444566433 2389999
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 002799 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 261 (879)
Q Consensus 214 ytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt--------------------------------~eEk~iA~ka 261 (879)
+|||++.++||.|.+. -.|.|+.|.|.|++..++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999763 257899999999999999886 6788999999
Q ss_pred HHHhCCceeEEEEEee-CCCcEEEecCCcccc
Q 002799 262 CIAFRQAVCGFDLLRC-EGRSYVCDVNGWSFV 292 (879)
Q Consensus 262 ~~afgq~VcGfDLLRs-~g~syV~DVNGwSFV 292 (879)
++++|+.++|+|++.+ +++++|+|||+-+-+
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELNARPGL 272 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeCCCCCC
Confidence 9999999999999986 789999999976544
No 12
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.75 E-value=2.4e-18 Score=198.66 Aligned_cols=178 Identities=22% Similarity=0.312 Sum_probs=134.2
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002799 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (879)
Q Consensus 84 ~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (879)
.+|+..+..++.||..+.++|+++|||+|.+.++... . +..++++ .++ |+|+||++|+
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~--~-------~~~~~~~----~~G-~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG--E-------AVEAFLA----EHG-AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH--H-------HHHHHHH----HhC-CEEEEECCCC--------
Confidence 6788899999999999999999999999999998642 0 1112222 233 7999999997
Q ss_pred ccCCCChHHHHHhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe------
Q 002799 164 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (879)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~p~~~~-~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~--DG~------ 234 (879)
+|.|+. + .+.+....-. -+.. .+....+|.||||+ |.|+||+|||+++++|+.|..|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~eL~~-a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDDLEA-AIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHHHHH-HHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 666653 2 1222211111 0001 12345799999994 999999999999999999999853 442
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 002799 235 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 264 (879)
Q Consensus 235 ------------------------------------------------vrrN~~gke~r~pv--~Lt~eEk~iA~ka~~a 264 (879)
.++|+|-|+....| .+.++.+++|.++|++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 25788878887777 7999999999999999
Q ss_pred hCCceeEEEEEeeC-CCc--EEEecCCcccc
Q 002799 265 FRQAVCGFDLLRCE-GRS--YVCDVNGWSFV 292 (879)
Q Consensus 265 fgq~VcGfDLLRs~-g~s--yV~DVNGwSFV 292 (879)
+|+.||||||+... .+| +|||||--+-.
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl 524 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGL 524 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccc
Confidence 99999999999873 455 89999965544
No 13
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.74 E-value=1.6e-16 Score=168.21 Aligned_cols=247 Identities=16% Similarity=0.175 Sum_probs=166.9
Q ss_pred eeEEEEee------cCcccCChhHHHHHHHHhccCCeEEEEeC-CcccccCCCccCCCcceeeccccCCCcH-HHHHHHH
Q 002799 6 KITIGVCV------MEKKVFSAPMGQILDRLQAFGEFEVIHFG-DKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYA 77 (879)
Q Consensus 6 ~~~iGVCa------M~~Ka~SkPm~~IL~rL~~~~~f~~iiF~-d~~IL~e~ve~wP~~D~lIsf~s~GfpL-~kai~y~ 77 (879)
+++|+||+ -+....|. +.|++-|.+.| +++++.. ++.+++. -.+..+|+++..+...+.. ..+-..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~~--~~~~~~D~v~~~~~g~~~~~~~~~~~l 78 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAAQ--LKELGFDRVFNALHGRGGEDGTIQGLL 78 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHHH--hccCCCCEEEEecCCCCCCccHHHHHH
Confidence 45788888 44444443 67777777654 6665553 3333221 2345789999876443333 1244556
Q ss_pred HhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC
Q 002799 78 TLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (879)
Q Consensus 78 ~lr~p~~iN-dl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged 156 (879)
+..+.+.+| +..+..++.||..+.++|+++|||+|++..+... ++.... -..++.|+|+||..|.
T Consensus 79 e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~~~~~-~~~~~~P~ivKP~~g~- 144 (304)
T PRK01372 79 ELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTRE------------EDLLAA-IDKLGLPLVVKPAREG- 144 (304)
T ss_pred HHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCc------------chHHHH-HhhcCCCEEEeeCCCC-
Confidence 677766665 4789999999999999999999999999998753 111111 1234689999999986
Q ss_pred cceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC--
Q 002799 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG-- 233 (879)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG-- 233 (879)
.|.|+. ++.|.....+ -+. .......+|+||||+ |+++.|.++|+++.++..+..+ .|
T Consensus 145 ----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~ 205 (304)
T PRK01372 145 ----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFY 205 (304)
T ss_pred ----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEE
Confidence 333432 2222221111 000 012356799999997 8999999999999988887764 33
Q ss_pred eeeecCCCCceeee--eeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeC-CCcEEEecCCcc
Q 002799 234 VVMRNPDGKEVRYP--VLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVCDVNGWS 290 (879)
Q Consensus 234 ~vrrN~~gke~r~p--v~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~-g~syV~DVNGwS 290 (879)
.++.+.+.|+..+. ..+++++ +++|.++++++|. .+|+||++.++ |++||+|||..+
T Consensus 206 ~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p 270 (304)
T PRK01372 206 DYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQP 270 (304)
T ss_pred eeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCC
Confidence 46777776654433 3577654 6789999999998 48999999996 679999999654
No 14
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.70 E-value=2.7e-17 Score=195.42 Aligned_cols=182 Identities=21% Similarity=0.324 Sum_probs=136.9
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002799 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (879)
Q Consensus 84 ~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (879)
.-++..+..++.||..+.++|+++|||+|++.++... ++..+. -..+++|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~------------~~a~~~-a~~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSA------------EDAWEA-AEEIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCH------------HHHHHH-HHHcCCCEEEEECCCC--------
Confidence 4778888999999999999999999999999988542 222221 1245789999999997
Q ss_pred ccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe------
Q 002799 164 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (879)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~--DG~------ 234 (879)
+|.|+. + ++.+....-. -.. ..+....+|+||||+ |.|+||++||+++++|+.|.+|-+ ||.
T Consensus 261 ---~G~GV~-~--~v~~~~el~~-a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-V--NITTREEIEA-AYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-E--ecCCHHHHHH-HHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 455553 2 1221111100 000 112346799999996 999999999999999999999854 332
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 002799 235 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 261 (879)
Q Consensus 235 -------------------------------------------------vr--rN~~gke~r~pv~--Lt~eEk~iA~ka 261 (879)
+| .|.+.|+....+. ++|+.+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 4888888888886 999999999999
Q ss_pred HHHhCCceeEEEEEeeC-------CCcEEEecCCccccccc
Q 002799 262 CIAFRQAVCGFDLLRCE-------GRSYVCDVNGWSFVKNS 295 (879)
Q Consensus 262 ~~afgq~VcGfDLLRs~-------g~syV~DVNGwSFVK~n 295 (879)
|+++|+.||||||+... .+..|||||.-+-++..
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~ 452 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMH 452 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhhc
Confidence 99999999999999853 45689999988777653
No 15
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.70 E-value=2.7e-16 Score=165.10 Aligned_cols=255 Identities=25% Similarity=0.296 Sum_probs=153.6
Q ss_pred ceEEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCccceeecchHhHHHHHHHHHhhccccCCCCCCCCchhhh
Q 002799 355 ELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDF 434 (879)
Q Consensus 355 eLr~vvaViRHgDRTPKQK~K~~~~~~~f~~l~~~~~~~~~~~e~kLk~~~qLq~~ld~~~~~l~~~~~~~~~~~~~e~~ 434 (879)
||+.|+.|+|||||||-.+++..++.+.+..+..
T Consensus 1 ~L~~v~v~~RHG~R~P~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (347)
T PF00328_consen 1 ELEQVQVLHRHGDRTPLSSFPKDVTEWWDCELES---------------------------------------------- 34 (347)
T ss_dssp EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CEEEEEEEEeCcCCcCCCCCCccccccccchhhh----------------------------------------------
Confidence 6999999999999999998776655555544442
Q ss_pred hhhhhHHHHHHHHhcCCCCCCcceeecchhhhhhhcccccccCCCcceeEEEEecc---cch---HHHHHHHhc--CCCC
Q 002799 435 EHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQ---DNG---VNEIAYWWG--SHSE 506 (879)
Q Consensus 435 e~~~kl~ql~~vLe~~~~fsGinrvQlKp~~~~~~~~~~~~~~~~~~~~lLIlKWG---hag---Ae~LG~~fR--Yp~~ 506 (879)
.+...+.+++|+|.+ +| . ......+|| +.| ...||+.|| |+
T Consensus 35 --------~~~~~~~~~~~~~~~-~~-----~---------------~~~~~~~~g~LT~~G~~q~~~lG~~lr~~Y~-- 83 (347)
T PF00328_consen 35 --------SAMSPETPGPFPGNY-IQ-----N---------------EFNWPCKWGQLTPRGMEQHYQLGKRLRERYP-- 83 (347)
T ss_dssp --------HHHHHTGGSGGGGTT--------T---------------CCGSSSCTTSBTHHHHHHHHHHHHHHHHHHH--
T ss_pred --------hhcccCCCCCccccc-cc-----c---------------ccccCCCCCcccchhhhHHHHHHHHHHHHHH--
Confidence 223344445666642 22 0 112235788 778 899999999 96
Q ss_pred CCchhhhcccccccceEeecCCchHHHHHHHHHHhhhcccC-----------CCCccceeeEecCCCcccCCccchHHHH
Q 002799 507 GTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG-----------QLTPILVSLVSKDSSMLDGLDNASIEME 575 (879)
Q Consensus 507 ~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~leg-----------eLtPIlv~lV~kd~~lLD~~~~a~~~m~ 575 (879)
+|+.-+.+. .++.||||+..||++||+||+.||....+ .-.|+-+..+.......++..-
T Consensus 84 --~l~~~~~~~-~~v~vrSt~~~Rt~~Sa~af~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 154 (347)
T PF00328_consen 84 --GLFPDNYNP-EQVYVRSTNKQRTIQSAQAFLQGLYPPSGEPFPDITQPPNSWQPIPVHTIPEIKKNDDDILL------ 154 (347)
T ss_dssp --TSSTSSS-T-TTEEEEEESSHHHHHHHHHHHHHHSHTTSS-ECTTTSCTSCTCTEEEEEEECCHCGTTSSSS------
T ss_pred --Hhccccccc-cceeEEEeccchHHHHHHHHHHHHhCCCccccccccccccCCCCcceeeccccccccchhcc------
Confidence 777666666 99999999999999999999999997766 2334444444321001111100
Q ss_pred HHHHHHHHHHhcCCCccCCCCCCCCcCccccCCCCCCHHHHHHHHHH----HHHHHHHHHHHHhhhhccccccCCCCCCC
Q 002799 576 EAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVK----LTKKVTEQVRQLAKDEDEDLAETNPYDVI 651 (879)
Q Consensus 576 ~vK~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (879)
.....|....+ .-......+..........+
T Consensus 155 ------------------------------------~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 189 (347)
T PF00328_consen 155 ------------------------------------PNYDNCPAYNEIDSENEKEQSEEIDKWNQDFQESL--------- 189 (347)
T ss_dssp ------------------------------------TSHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred ------------------------------------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------
Confidence 00011222111 11111111111111100000
Q ss_pred CChhhhhhcCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHhccccCcccCCCCCcchhhhhhhhhcccccccccHH
Q 002799 652 PPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLD 731 (879)
Q Consensus 652 ~~~~~~~~l~~~~~~~~~i~~~~~c~gE~~~L~~~RW~KL~~dF~~~k~~~fD~SKIpdiYD~iKYD~lHN~~l~l~~l~ 731 (879)
. ..+++. |+|++...+...|..++..+|.. ...+.+.+|++|+.+++|+.++..+ ..+.
T Consensus 190 ---~------------~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 248 (347)
T PF00328_consen 190 ---A------------KRLQKV--IPGEDNLTFFDVWAIFDDCLYEQ--IYNDGSPFPEWFTDMKEDALQLEYL--EDLK 248 (347)
T ss_dssp ---H------------HHHHHH--STTCEECTHHHHHHHHHHHHHHH--HHHTT-GGGGGSCHTSHHHHHHHHH--HHHH
T ss_pred ---h------------hhhccc--cCccccccchhhhhhhhhhhhhh--ccCCCCCCchhhcccchHHHHHHhh--hhHH
Confidence 0 000111 56666667889999999999874 2689999999999999999998773 3344
Q ss_pred HHHHHHHHhcceecccccCCCchhhhhhHHHHHHHHHHHHHHHHHH
Q 002799 732 ELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRN 777 (879)
Q Consensus 732 eLY~~ak~LaD~V~PqEYGI~~~EKl~IG~~~~~pLL~KI~~DL~~ 777 (879)
++|.. ||.+++ ++...+.||++.|+..+..
T Consensus 249 ~~~~~------------~~~~~~----~~~~~~~~ll~~ll~~l~~ 278 (347)
T PF00328_consen 249 EYYQY------------YGYSDE----IARLQGGPLLNELLRRLKQ 278 (347)
T ss_dssp HHHHH------------CSTTHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhc------------ccCCch----HHHHHHhHHHHHHHHHHhh
Confidence 55555 888887 4556667888888888776
No 16
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.68 E-value=5.6e-17 Score=195.92 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=129.9
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 002799 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (879)
Q Consensus 86 Ndl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (879)
++..+..+++||..+.++|+++|||+|++.++... ++..+. -..+++|+|+||.+|.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~------------~ea~~~-~~~ig~PvVVKP~~g~---------- 259 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSA------------EDAWEA-AQDLGYPVVIKPYDGN---------- 259 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHH-HHHcCCCEEEEECCCC----------
Confidence 56778889999999999999999999999988542 122221 1235689999999996
Q ss_pred CCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC-----------
Q 002799 166 SAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG----------- 233 (879)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG----------- 233 (879)
+|.|+. + .+.+....-.. .. .......+|+|+||+ |+|+||+|||+++++|+.|.+|.|-|
T Consensus 260 -~G~GV~-l--~v~s~~el~~a-~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~ 332 (864)
T TIGR02068 260 -HGRGVT-I--NILTRDEIESA-YEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIE 332 (864)
T ss_pred -CccCEE-E--EeCCHHHHHHH-HHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHH
Confidence 444442 1 11111111000 00 112346799999995 89999999999999999999997655
Q ss_pred ------------------------------------------------eeeecCCCCceeeee--eCCHHHHHHHHHHHH
Q 002799 234 ------------------------------------------------VVMRNPDGKEVRYPV--LLTPNEKQMAREVCI 263 (879)
Q Consensus 234 ------------------------------------------------~vrrN~~gke~r~pv--~Lt~eEk~iA~ka~~ 263 (879)
..++|.+.|+...-+ .++|+.+++|.+||+
T Consensus 333 ~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~ 412 (864)
T TIGR02068 333 QINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAK 412 (864)
T ss_pred HhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHH
Confidence 235788888888777 999999999999999
Q ss_pred HhCCceeEEEEEee-------CCCcEEEecCCcc
Q 002799 264 AFRQAVCGFDLLRC-------EGRSYVCDVNGWS 290 (879)
Q Consensus 264 afgq~VcGfDLLRs-------~g~syV~DVNGwS 290 (879)
++|++||||||+-. ..+..|||||+-+
T Consensus 413 ~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p 446 (864)
T TIGR02068 413 IIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAP 446 (864)
T ss_pred HhCCCeEEEEEEecCCCCCccccCcEEEEEcCCc
Confidence 99999999999763 2234799999664
No 17
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.65 E-value=4.9e-16 Score=185.24 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=127.9
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 002799 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (879)
Q Consensus 83 ~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (879)
...|.+.+-.+++||..+.++|+++|||+|++.++... ++....-...+++|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~------------e~a~~~~~~~~g~PvVVKP~~g~------- 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL------------EEALADYSLFADKAIVVKPKSTN------- 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEEECCCC-------
Confidence 45667777778899999999999999999999888532 12221111112589999999998
Q ss_pred eccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeee------
Q 002799 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM------ 236 (879)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vr------ 236 (879)
.|.|+. +++.+.+.......-....+.+..+|+||||+ |+|+||+|||+++++|+.|.+|.|.|+=+
T Consensus 536 ----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eL 608 (752)
T PRK02471 536 ----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVREL 608 (752)
T ss_pred ----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHH
Confidence 666764 55544433332221000123456799999995 99999999999999999999996644311
Q ss_pred -----------------------------------------------------ecCCCCceeee--eeCCHHHHHHHHHH
Q 002799 237 -----------------------------------------------------RNPDGKEVRYP--VLLTPNEKQMAREV 261 (879)
Q Consensus 237 -----------------------------------------------------rN~~gke~r~p--v~Lt~eEk~iA~ka 261 (879)
.|.+-|+...- =.+.++-+++|.+|
T Consensus 609 i~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~a 688 (752)
T PRK02471 609 VAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKA 688 (752)
T ss_pred HHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHH
Confidence 12222222111 14667779999999
Q ss_pred HHHhCCceeEEEEEeeC-------C--CcEEEecCCcccc
Q 002799 262 CIAFRQAVCGFDLLRCE-------G--RSYVCDVNGWSFV 292 (879)
Q Consensus 262 ~~afgq~VcGfDLLRs~-------g--~syV~DVNGwSFV 292 (879)
|+++|+.||||||+-.+ . +..|||||+-+-.
T Consensus 689 a~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l 728 (752)
T PRK02471 689 AKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNFNPAM 728 (752)
T ss_pred HHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecCCCch
Confidence 99999999999999653 1 4568999976543
No 18
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.57 E-value=6.5e-14 Score=149.16 Aligned_cols=244 Identities=16% Similarity=0.203 Sum_probs=156.9
Q ss_pred CChhHHHHHHHHhccCCeEEEEeCCc-ccccCCCccCCCcceeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhh
Q 002799 19 FSAPMGQILDRLQAFGEFEVIHFGDK-VILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLH 95 (879)
Q Consensus 19 ~SkPm~~IL~rL~~~~~f~~iiF~d~-~IL~e~ve~wP~~D~lIsf~s~GfpL-~kai~y~~lr~p~~i-Ndl~~q~il~ 95 (879)
.-+--++|++-|.+.| ++++.+... ..+.. +..-+.+|+++....-.+-. ..+-++++..+.+.+ ++..+..+++
T Consensus 17 sl~s~~~i~~al~~~g-~~~~~i~~~~~~~~~-~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~ 94 (299)
T PRK14571 17 SLRSGERVKKALEKLG-YEVTVFDVDEDFLKK-VDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICF 94 (299)
T ss_pred hHHHHHHHHHHHHHcC-CeEEEEccCchHHHH-hhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHc
Confidence 3345567777787755 666555432 22211 22234578888775322222 355667778886665 5699999999
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 002799 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (879)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (879)
||..+.++|+ +|||+|++.++... . ....+++|+|+||.+|. .|-|+.
T Consensus 95 DK~~~k~~l~-~~ip~p~~~~~~~~-------------~----~~~~l~~P~vvKP~~g~-----------~s~Gv~--- 142 (299)
T PRK14571 95 DKLLTYRFLK-GTVEIPDFVEIKEF-------------M----KTSPLGYPCVVKPRREG-----------SSIGVF--- 142 (299)
T ss_pred CHHHHHHHHh-cCCCCCCEEEEech-------------h----hhhhcCCCEEEecCCCC-----------CcCCEE---
Confidence 9999999998 58999999888431 0 11235689999999985 233432
Q ss_pred hhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeeeCCCCCC--eeeecCCCCceee--e
Q 002799 176 RKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEVRY--P 247 (879)
Q Consensus 176 rkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~DIKVytVG~~---~vhAe~RKSP~~DG--~vrrN~~gke~r~--p 247 (879)
++.|...... -+. ..+....+|+||||+ |+++.|-++|.. .+.+....-|. ++ .+..+.++++..+ |
T Consensus 143 -~v~~~~el~~-~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~~-~~~~~~~~k~~~g~~~~~~p 217 (299)
T PRK14571 143 -ICESDEEFQH-ALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRPK-RRFYDYVAKYTKGETEFILP 217 (299)
T ss_pred -EECCHHHHHH-HHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEecC-CCccccccccCCCCeeEEeC
Confidence 1222211111 000 112345799999996 899999999853 35555443331 22 1344444555443 5
Q ss_pred eeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecCCccccccchhhHHH
Q 002799 248 VLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDD 301 (879)
Q Consensus 248 v~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~g~syV~DVNGwSFVK~n~kYYdd 301 (879)
..|+++. +++|.++++++|. .+|+||++..+|++||+|||.-+-......+...
T Consensus 218 ~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~Pg~~~~s~~~~~ 276 (299)
T PRK14571 218 APLNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTVPGLTELSDLPAS 276 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCCCCCCccCHHHHH
Confidence 5687764 5689999999995 7999999988889999999988776655444433
No 19
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.55 E-value=1.3e-13 Score=146.65 Aligned_cols=209 Identities=15% Similarity=0.183 Sum_probs=132.8
Q ss_pred CCcceeeccccCCCcH-HHHHHHHHhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002799 55 PICDCLIAFYSSGYPL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (879)
Q Consensus 55 P~~D~lIsf~s~GfpL-~kai~y~~lr~p~~iN-dl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 132 (879)
..+|++++.....+.. ..+-+.++..+.+.+| +..+..+++||..+.++|+++|||+|++.++.++. . +.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~-~-------~~ 133 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNR-A-------SA 133 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEeccc-c-------cc
Confidence 3478888854211112 3566778888866666 58999999999999999999999999999987221 0 00
Q ss_pred cce-eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCce
Q 002799 133 EDF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTD 210 (879)
Q Consensus 133 ~d~-i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~D 210 (879)
.+. +.-....++.|+|+||..|. .|.|+. ++.|....... +. ....+..+|+||||+ |++
T Consensus 134 ~~~~~~~~~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~el~~~-~~~~~~~~~~~lvEe~i~--G~e 195 (315)
T TIGR01205 134 DELECEQVAEPLGFPVIVKPAREG-----------SSVGVS----KVKSEEELQAA-LDEAFEYDEEVLVEQFIK--GRE 195 (315)
T ss_pred hhhhHHHHHHhcCCCEEEEeCCCC-----------CccCEE----EECCHHHHHHH-HHHHHhcCCcEEEEcCCC--CEE
Confidence 000 00001235689999999975 222321 12222111110 00 112356799999995 999
Q ss_pred eEEEEEC-CceeEEEeeeCCCCC-CeeeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeC-CC
Q 002799 211 VKVYTVG-PEYAHAEARKSPVVD-GVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GR 280 (879)
Q Consensus 211 IKVytVG-~~~vhAe~RKSP~~D-G~vrrN~~gke~r--~pv~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~-g~ 280 (879)
+.|.++| +.....+.+-..... -.+..+.+.++.. .|..++++. +++|.++++++|. .+++||++... |+
T Consensus 196 ~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~ 275 (315)
T TIGR01205 196 LEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGE 275 (315)
T ss_pred EEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCC
Confidence 9999999 554344443321100 0133344434333 344577654 7899999999998 69999999985 57
Q ss_pred cEEEecCCc
Q 002799 281 SYVCDVNGW 289 (879)
Q Consensus 281 syV~DVNGw 289 (879)
+||+|||.-
T Consensus 276 ~~viEvN~~ 284 (315)
T TIGR01205 276 IYLNEINTI 284 (315)
T ss_pred EEEEEeeCC
Confidence 999999954
No 20
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.54 E-value=1.3e-14 Score=172.00 Aligned_cols=179 Identities=22% Similarity=0.295 Sum_probs=119.7
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee-eecCeeccCcEEEeeccccCcceeEE
Q 002799 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIY 162 (879)
Q Consensus 84 ~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i-~v~g~~~~kPfVeKpv~GedHni~IY 162 (879)
...+..+-.++.||..+-++|+++|||+|...++.... +....+ .+. ++|+|+||++|.
T Consensus 463 s~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~---------~a~~~~~~~~----g~PVVVKP~~g~------- 522 (737)
T TIGR01435 463 SKDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQA---------LALEAFSLFE----NKAIVVKPKSTN------- 522 (737)
T ss_pred CCccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHhc----CCCEEEeeCCCC-------
Confidence 33455566888999999999999999999998885420 001111 122 479999999998
Q ss_pred eccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe--ee-
Q 002799 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--VM- 236 (879)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~--DG~--vr- 236 (879)
+|-|+. ++....+.. .+..-+. ..+.+..+|+||||+ |+|+||+|+|+++++|+.|.+|-| ||+ ++
T Consensus 523 ----~G~GVs-i~~~~~~~e-el~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~e 594 (737)
T TIGR01435 523 ----YGLGIT-IFKNGFTLE-DFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRE 594 (737)
T ss_pred ----CcCCeE-EecCcCCHH-HHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHH
Confidence 566653 333221111 1111111 224466799999996 999999999999999999999877 443 11
Q ss_pred ----ecC---CCCcee-----------------------------------------------eee-eCCHHHHHHHHHH
Q 002799 237 ----RNP---DGKEVR-----------------------------------------------YPV-LLTPNEKQMAREV 261 (879)
Q Consensus 237 ----rN~---~gke~r-----------------------------------------------~pv-~Lt~eEk~iA~ka 261 (879)
.|. .|++.+ -.+ .+.++-+++|.+|
T Consensus 595 LI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~a 674 (737)
T TIGR01435 595 LVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRI 674 (737)
T ss_pred HHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHH
Confidence 121 122211 111 3456779999999
Q ss_pred HHHhCCceeEEEEEeeC-CC--------cEEEecCCcc
Q 002799 262 CIAFRQAVCGFDLLRCE-GR--------SYVCDVNGWS 290 (879)
Q Consensus 262 ~~afgq~VcGfDLLRs~-g~--------syV~DVNGwS 290 (879)
|+|+|+.||||||+-.. .. .-|||||--+
T Consensus 675 a~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P 712 (737)
T TIGR01435 675 ATAVGAAICGVDLIIPDETIPDTDKHAIWGVIEANFNP 712 (737)
T ss_pred HHhcCCCEEEEEEEecCCCCCccccccceEEEEEcCCc
Confidence 99999999999999541 11 2389999543
No 21
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.49 E-value=4.5e-13 Score=143.46 Aligned_cols=246 Identities=15% Similarity=0.154 Sum_probs=152.7
Q ss_pred eeEEEEeec----CcccCChhHHHHHHHHhccCCeEEEEeCC--cccccCCCccCCCcceee-ccccCCCcHHHHHHHHH
Q 002799 6 KITIGVCVM----EKKVFSAPMGQILDRLQAFGEFEVIHFGD--KVILEDPIEKWPICDCLI-AFYSSGYPLEKAESYAT 78 (879)
Q Consensus 6 ~~~iGVCaM----~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d--~~IL~e~ve~wP~~D~lI-sf~s~GfpL~kai~y~~ 78 (879)
+++|+|-+= ++-+--+-.++|++-|.+- .++++.+.- +.++..-.+. .+|+++ .+|+..--...+.+.++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLEL--KPDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhcc--CCCEEEEeCCCCCCCChHHHHHHH
Confidence 456666542 2222335667888888774 477776642 2222221122 355444 34433222245667777
Q ss_pred hcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 002799 79 LRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (879)
Q Consensus 79 lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (879)
+.+ ||+-++..+..+++||..+.++|+++|||||++.++... ... -..+++|+|+||.+|.
T Consensus 80 ~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~------------~~~----~~~~~~P~vVKP~~gg-- 141 (296)
T PRK14569 80 MLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDK------------LVA----EDEISFPVAVKPSSGG-- 141 (296)
T ss_pred HcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchh------------hhh----HhhcCCCEEEEeCCCC--
Confidence 888 566788899999999999999999999999999887531 001 1345789999999975
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeee
Q 002799 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR 237 (879)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrr 237 (879)
.|-|+. ++.|...... -+........+|+||||+ |+++.|.++|+....+....++ ++.+..
T Consensus 142 ---------ss~Gv~----~v~~~~eL~~-a~~~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~~ 203 (296)
T PRK14569 142 ---------SSIATF----KVKSIQELKH-AYEEASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYDY 203 (296)
T ss_pred ---------CCcCeE----EcCCHHHHHH-HHHHHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCCh
Confidence 222321 2222211111 000111234689999995 8999999999876555554432 222221
Q ss_pred -cCCCCceee--eeeCC----HHHHHHHHHHHHHhCC-ceeEEEEEee-CCCcEEEecCCcc
Q 002799 238 -NPDGKEVRY--PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWS 290 (879)
Q Consensus 238 -N~~gke~r~--pv~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs-~g~syV~DVNGwS 290 (879)
+.+.++..+ |..++ .+-+++|.++++++|. .+|+||++-. +|.+||+|||.-+
T Consensus 204 ~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~P 265 (296)
T PRK14569 204 ESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSP 265 (296)
T ss_pred hhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCC
Confidence 222333333 44444 3567789999999995 6999999887 5679999999443
No 22
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.48 E-value=3.3e-14 Score=143.20 Aligned_cols=145 Identities=22% Similarity=0.329 Sum_probs=90.8
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 002799 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (879)
Q Consensus 111 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 190 (879)
+|.|++.... .+..++++-.| . +|+||+.|. .|-|+-++-+.-.|.++.++
T Consensus 12 ~P~T~vs~~~---------~~i~~f~~~~~----~-~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e---- 62 (173)
T PF02955_consen 12 IPPTLVSRDK---------EEIRAFIEEHG----D-IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE---- 62 (173)
T ss_dssp S--EEEES-H---------HHHHHHHHHHS----S-EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----
T ss_pred CcCEEEECCH---------HHHHHHHHHCC----C-EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----
Confidence 5888888643 12334454344 2 999999997 44454432222222233332
Q ss_pred ccccC--cceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh--
Q 002799 191 RVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-- 265 (879)
Q Consensus 191 ~~r~~--gsyIyQEFI~t-~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~af-- 265 (879)
..-.+ ..++.|+|+++ ..-|.|+++++++++||..|.+. .|+||.|.+-|+...++.||++|.+||.+++..+
T Consensus 63 ~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~ 140 (173)
T PF02955_consen 63 TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRE 140 (173)
T ss_dssp HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhh
Confidence 22233 45999999998 55599999999999999999986 9999999999999999999999999999999877
Q ss_pred -CCceeEEEEEeeCCCcEEEecCCcc
Q 002799 266 -RQAVCGFDLLRCEGRSYVCDVNGWS 290 (879)
Q Consensus 266 -gq~VcGfDLLRs~g~syV~DVNGwS 290 (879)
|+.++|+|++ +.|+.|||=.|
T Consensus 141 ~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 141 DGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp TT--EEEEEEE----TTEEEEEE-SS
T ss_pred cCcEEEEEecc----ccceEEEeccC
Confidence 7899999999 46999999655
No 23
>PRK06849 hypothetical protein; Provisional
Probab=99.38 E-value=3.7e-12 Score=140.49 Aligned_cols=194 Identities=16% Similarity=0.239 Sum_probs=129.9
Q ss_pred cceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 002799 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (879)
+|++|+..+..+.+.++.+.++..-.+..++.+....++||...++.++++|||+|+|..+... ++..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~------------~~l~ 144 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDP------------EAIR 144 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHHH
Confidence 5888888766555555555444444567899999999999999999999999999999998643 1111
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 002799 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (879)
Q Consensus 137 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytV 216 (879)
.+.....++|+|+||+.|. .|.|+.+ +.+. ..+. .+ ....+..+|+||||+-....+-+++.
T Consensus 145 ~~~~~~~~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~~-~~~~~~~~ivQe~I~G~e~~~~~~~~ 206 (389)
T PRK06849 145 NFMFKTPHTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-EL-PISKDNPWVMQEFIQGKEYCSYSIVR 206 (389)
T ss_pred HHhhcCCCCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-cc-ccCCCCCeEEEEEecCCeEEEEEEEE
Confidence 1111112589999999986 3444431 2221 1111 00 11234569999999965556777888
Q ss_pred CCceeEEEeeeCCCCCCeeeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEee-CCCcEEEecC
Q 002799 217 GPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 287 (879)
Q Consensus 217 G~~~vhAe~RKSP~~DG~vrrN~~gk-e~r~pv~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs-~g~syV~DVN 287 (879)
++++++...... .... .++ .+.+.....++-.++|.++++++|.. +++||++.+ +|+.|++|||
T Consensus 207 ~G~v~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 207 SGELRAHSCYKP-----EYCA--GSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred CCEEEEEEEeec-----cccC--CCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 888765544321 1111 121 12222234678899999999999977 999999998 6789999999
No 24
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.37 E-value=4.7e-12 Score=135.16 Aligned_cols=193 Identities=23% Similarity=0.291 Sum_probs=126.9
Q ss_pred cceeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002799 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (879)
Q Consensus 57 ~D~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (879)
+|++|+.+....++ .+.-+.++..+ +++.|+.+...+++||....++|+++|||+|++..+... ++
T Consensus 70 id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~ 137 (326)
T PRK12767 70 IDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESL------------ED 137 (326)
T ss_pred CCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCH------------HH
Confidence 57777764333332 33333344445 467899999999999999999999999999999887532 11
Q ss_pred eee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002799 135 FVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (879)
Q Consensus 135 ~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKV 213 (879)
... ..-..++.|+|+||.+|. .|.|+. .+.|.. ++.. .+.....+|+||||.-..-.+-+
T Consensus 138 ~~~~~~~~~~~~P~viKP~~g~-----------~s~gv~----~v~~~~-el~~---~~~~~~~~lvqeyi~G~e~~v~~ 198 (326)
T PRK12767 138 FKAALAKGELQFPLFVKPRDGS-----------ASIGVF----KVNDKE-ELEF---LLEYVPNLIIQEFIEGQEYTVDV 198 (326)
T ss_pred HHhhhhcccCCCCEEEEeCCCC-----------CccCeE----EeCCHH-HHHH---HHHhCCCeEEEeccCCceEEEEE
Confidence 111 011235689999999886 333332 122211 1110 12233489999999434455666
Q ss_pred EEE-CCceeEEEeeeCCCCCCeeeecCCCCc-eeeeeeCCHHHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecCC
Q 002799 214 YTV-GPEYAHAEARKSPVVDGVVMRNPDGKE-VRYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (879)
Q Consensus 214 ytV-G~~~vhAe~RKSP~~DG~vrrN~~gke-~r~pv~Lt~eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV~DVNG 288 (879)
|+. ++++++...++.- ...+|. ....+...++-+++|.++++++|. .+++||++...|++||+|+|.
T Consensus 199 ~~~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 199 LCDLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEcCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 666 6777776666531 011222 222234568889999999999999 599999999999999999995
No 25
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.35 E-value=6.4e-12 Score=137.26 Aligned_cols=198 Identities=17% Similarity=0.222 Sum_probs=125.2
Q ss_pred cceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccce
Q 002799 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (879)
+|++++-+.. .+. .+++.++..+.++.++.++..+++||....+.| +++|||+|++..+... ++.
T Consensus 63 id~v~~~~e~-v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~------------~~~ 128 (380)
T TIGR01142 63 PDYIVPEIEA-IAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSL------------DEL 128 (380)
T ss_pred CCEEEeccCc-cCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 6777765433 343 345667777877889999999999999999975 8999999999988642 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 002799 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (879)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVyt 215 (879)
... ...+++|+|+||++|.+ ...++.-.+.- -....++.+... ....++.+|+||||+ .+..+-|.+
T Consensus 129 ~~~-~~~~g~P~VvKP~~g~~-s~gv~~v~~~~-el~~~~~~~~~~---------~~~~~~~~ivEe~i~-~~~E~sv~~ 195 (380)
T TIGR01142 129 REA-VEKIGYPCVVKPVMSSS-GKGQSVVRGPE-DIEKAWEYAQEG---------ARGGAGRVIVEEFID-FDYEITLLT 195 (380)
T ss_pred HHH-HHHcCCCEEEEECCCcC-CCCeEEECCHH-HHHHHHHHHHhh---------ccCCCCCEEEEEecC-CCEEEEEEE
Confidence 111 12456899999999861 11122111110 011112111000 001245799999996 357888877
Q ss_pred E---CCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecC
Q 002799 216 V---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVN 287 (879)
Q Consensus 216 V---G~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~g~syV~DVN 287 (879)
+ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++||+|||
T Consensus 196 ~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEin 269 (380)
T TIGR01142 196 VRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEVS 269 (380)
T ss_pred EEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEee
Confidence 7 3442221 12 22222222222334577788764 5788999999997 78899999998899999999
No 26
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.35 E-value=1e-11 Score=135.13 Aligned_cols=206 Identities=18% Similarity=0.240 Sum_probs=129.4
Q ss_pred CcceeeccccCCCcHH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002799 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (879)
.+|++++-..-.+..+ .+.++++..+ ||+=++..+..+++||..+.++|+++|||+|++..+.... +..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGD---------WEE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccc---------cch
Confidence 5798887653223332 4566777777 5556788999999999999999999999999999886531 000
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 002799 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~DIK 212 (879)
..+..-...++.|+|+||.+|. .+.|+. ++.+... +..-+. ..+.+..+|+||||+ |+++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~g-----------sS~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLG-----------SSVGIS----KVKNEEE-LAAALDLAFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCC-----------CccCEE----EECCHHH-HHHHHHHHHhcCCcEEEEcCcC--CEEEE
Confidence 0111011245789999999975 233332 1211111 110000 123457899999998 89999
Q ss_pred EEEECCc-eeEEEeeeCCCCCCee--eecC-CC-CceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEee-CCCc
Q 002799 213 VYTVGPE-YAHAEARKSPVVDGVV--MRNP-DG-KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRC-EGRS 281 (879)
Q Consensus 213 VytVG~~-~vhAe~RKSP~~DG~v--rrN~-~g-ke~r~pv~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs-~g~s 281 (879)
|-++|.+ .+......-+. ++-+ .... .| .+...|..|+++ -+++|.++++++|. .+|.+|++-. +|++
T Consensus 214 v~vl~~~~~~~~~~ei~~~-~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVKP-DDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEecC-CceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999952 11111111110 1111 1111 12 233456677765 46899999999996 7999999987 4569
Q ss_pred EEEecCCc
Q 002799 282 YVCDVNGW 289 (879)
Q Consensus 282 yV~DVNGw 289 (879)
||+|||--
T Consensus 293 ~vlEiNt~ 300 (333)
T PRK01966 293 YLNEINTM 300 (333)
T ss_pred EEEEeeCC
Confidence 99999944
No 27
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.34 E-value=6.7e-12 Score=137.38 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=123.9
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 002799 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (879)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (879)
.+..+++..+ ||+-++..+..+++||..+.++|+++|||+|++..+.+..- +...++.+.. -..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~-~~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLK-LESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHH-HHhcCCCEEEe
Confidence 5667778887 55557789999999999999999999999999999865310 0001111111 12357899999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC----ce---eE
Q 002799 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 222 (879)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~----~~---vh 222 (879)
|++|. ..+|++.. +. ..|.+.+.. ....+..+|+||||+ |+++.|-++|. +. +.
T Consensus 178 P~~ggsS~GV~~v~--~~----~el~~a~~~----------~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKIT--NA----EQLMTLLAL----------IFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEEC--CH----HHHHHHHHH----------HHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 99974 33333322 21 112221110 012355789999995 89999999973 21 11
Q ss_pred --EEeeeCCCCCCe---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEecCCcc
Q 002799 223 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWS 290 (879)
Q Consensus 223 --Ae~RKSP~~DG~---vrrN~~gke~--r~pv~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs~g~syV~DVNGwS 290 (879)
.|-+ | .|. ++...+.++. ..|..|+++ -+++|.++++++|.. ++++|++-++|++||+|||.-+
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiNt~P 315 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNTLP 315 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeeeCCC
Confidence 2222 2 222 3333333333 235667765 588999999999965 9999999988889999999554
No 28
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.33 E-value=5.3e-11 Score=130.02 Aligned_cols=199 Identities=15% Similarity=0.232 Sum_probs=131.9
Q ss_pred CcceeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002799 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (879)
.+|++++-..-++-. ..+..++++.+ ||+-++..+..+++||..+.++|+++|||+|++.++.+..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 478877765433444 36777888888 5666899999999999999999999999999999886431
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002799 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIK 212 (879)
+ + ....+++|+|+||.+|. ..+|.+.... ..|...+. ...+.+..+|+||||+ |+++-
T Consensus 158 ~-~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~------~eL~~a~~----------~a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-P--DAATLTYPVFVKPARSGSSFGVSKVNSA------DELDYAIE----------SARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-h--hhhhcCCCEEEEeCCCCCCCCEEEeCCH------HHHHHHHH----------HHHhcCCcEEEECCcC--CEEEE
Confidence 0 1 11346789999999974 2222222211 11211110 0112356789999996 89999
Q ss_pred EEEECCc---eeEEEeeeCCCCCCeeeec----CC-C---CceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEe
Q 002799 213 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD-G---KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLR 276 (879)
Q Consensus 213 VytVG~~---~vhAe~RKSP~~DG~vrrN----~~-g---ke~r~pv~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLR 276 (879)
|-++|.. .+....+..+ ..|.++.. .. | .....|..|+++ -+++|.++++++|. .+|.||++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9988863 2222233333 13333311 11 1 123457778765 46899999999998 799999998
Q ss_pred e-CCCcEEEecCC
Q 002799 277 C-EGRSYVCDVNG 288 (879)
Q Consensus 277 s-~g~syV~DVNG 288 (879)
. +|.+||+|||-
T Consensus 296 ~~~g~~~llEINt 308 (343)
T PRK14568 296 QEDGTVVLNEVNT 308 (343)
T ss_pred eCCCCEEEEEeeC
Confidence 7 56689999994
No 29
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.30 E-value=7e-11 Score=130.95 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=130.2
Q ss_pred CcceeeccccCCCcH-HHHHHHHHhcCCcccCCc-hhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002799 56 ICDCLIAFYSSGYPL-EKAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL-~kai~y~~lr~p~~iNdl-~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (879)
.+|++++...-.+-. -.+..++++.+.+.++.- .+..+++||..+.++|+++|||||.+..+.+... +...+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~ 160 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKE 160 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchH
Confidence 478777655322333 277889999997777766 6999999999999999999999999887754310 00111
Q ss_pred ceeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002799 134 DFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIK 212 (879)
+...-....++.|+|+||..+ +..+|.+-.... .|-+.+.. ....+..+|+||||. |+++.
T Consensus 161 ~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al~~----------a~~~~~~vlVEefI~--GrEi~ 222 (364)
T PRK14570 161 GIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCIEE----------AFKYDLTVVIEKFIE--AREIE 222 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHHHH----------HHhCCCCEEEECCcC--CEEEE
Confidence 111111124678999999985 333333221111 11111110 122355689999997 99999
Q ss_pred EEEECCceeEE---EeeeCCCCCCeee---e--cCC-CCcee--eeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEe
Q 002799 213 VYTVGPEYAHA---EARKSPVVDGVVM---R--NPD-GKEVR--YPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLR 276 (879)
Q Consensus 213 VytVG~~~vhA---e~RKSP~~DG~vr---r--N~~-gke~r--~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLR 276 (879)
|-++|+....+ ...... ++.|- . ..+ |+... -|..|++ +-+++|.++++++|. .+|.||++-
T Consensus 223 v~Vlg~~~~~v~~~~Ei~~~--~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 223 CSVIGNEQIKIFTPGEIVVQ--DFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred EEEECCCCceEeeeEEEEeC--CCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 99999753221 111110 21121 1 111 23222 2555664 678899999999998 699999988
Q ss_pred e--CCCcEEEecCCc
Q 002799 277 C--EGRSYVCDVNGW 289 (879)
Q Consensus 277 s--~g~syV~DVNGw 289 (879)
+ +|.+||+|||--
T Consensus 301 ~~~~g~~yvlEiNt~ 315 (364)
T PRK14570 301 EKDTGLIYLNEINTI 315 (364)
T ss_pred ECCCCcEEEEEeeCC
Confidence 7 367999999944
No 30
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.23 E-value=4.5e-11 Score=132.55 Aligned_cols=191 Identities=16% Similarity=0.176 Sum_probs=121.6
Q ss_pred HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEE
Q 002799 71 EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVE 149 (879)
Q Consensus 71 ~kai~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVe 149 (879)
.....+++..+. +.-.+..+..+.+||..+.++|+++|||+|++..+... ++..... ..++.|+|+
T Consensus 41 ~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~------------~ea~~~~-~~~g~PvVv 107 (379)
T PRK13790 41 DGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERK------------KDALTYI-ENCELPVVV 107 (379)
T ss_pred HHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCH------------HHHHHHH-HhcCCCEEE
Confidence 455667778884 44467788899999999999999999999998877532 1222211 135689999
Q ss_pred eecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeE--EEee
Q 002799 150 KPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH--AEAR 226 (879)
Q Consensus 150 Kpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vh--Ae~R 226 (879)
||..|. -.++.+...... ....++.+- ....++.+|+||||.-.--.|-+++-|..++. +..+
T Consensus 108 Kp~~~~~gkGV~iv~~~~e---l~~a~~~~~-----------~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~~~~ 173 (379)
T PRK13790 108 KKDGLAAGKGVIIADTIEA---ARSAIEIMY-----------GDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQ 173 (379)
T ss_pred EeCCCCCCCCEEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEcccCceEEEEEEeeCCEEEecccccc
Confidence 999875 233333322111 111122110 01124579999999766677888887765432 2232
Q ss_pred eCC-CCCCeeeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---CCceeE---EEEEeeCCCcEEEecCC
Q 002799 227 KSP-VVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (879)
Q Consensus 227 KSP-~~DG~vrrN~~gke~r~pv-~Lt~eE-----k~iA~ka~~af---gq~VcG---fDLLRs~g~syV~DVNG 288 (879)
+.. ..+|+..-|+.|-+.-.|+ .++++. ++||.++++++ |..++| +|++-+.+++||+|||.
T Consensus 174 ~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 174 DHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred cccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 221 2366666666333333344 356653 68899999998 545556 59988888899999996
No 31
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.16 E-value=1.7e-10 Score=111.86 Aligned_cols=162 Identities=23% Similarity=0.299 Sum_probs=95.1
Q ss_pred HhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHH
Q 002799 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 172 (879)
Q Consensus 93 il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~ 172 (879)
++.||...++++.+.|||+|++..+.... +..+.+. .++.|+|+||..|. .|.|+.
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~----~~~~p~vvKp~~g~-----------gs~gv~ 56 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAE----DLGFPFVVKPVDGS-----------GSRGVF 56 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHH----HSSSSEEEEESS-S-----------TTTT-E
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEcCccc-----------cCCCEE
Confidence 36799999999999999999999987531 1122222 22379999999996 233332
Q ss_pred HHHhhcCCCccccccccccc-----ccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCC---Cce
Q 002799 173 ELFRKVGNRSSEFHPDVRRV-----RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG---KEV 244 (879)
Q Consensus 173 rLfrkign~sS~~~p~~~~~-----r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~g---ke~ 244 (879)
+ +.+.+.... -+..+ .....||+||||+...-.+.+++.+++.+.+...+.- .....+. ...
T Consensus 57 -~---~~~~~~l~~-~~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~ 126 (184)
T PF13535_consen 57 -I---VHSPEELEA-ALAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVPT 126 (184)
T ss_dssp -E---ESSHHHHHH-HHHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEEE
T ss_pred -E---eCCHHHHHH-HHHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----cccccccccceee
Confidence 1 111111111 00011 1357899999999655777778888887555544331 1112221 233
Q ss_pred eeeeeC----CHHHHHHHHHHHHHhCC--ceeEEEEEeeCCC-cEEEecCC
Q 002799 245 RYPVLL----TPNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 288 (879)
Q Consensus 245 r~pv~L----t~eEk~iA~ka~~afgq--~VcGfDLLRs~g~-syV~DVNG 288 (879)
.+.... .++-++.+.++++++|. .++++|++...++ .|++|||.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 127 GYSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp EEEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred eeecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 333322 26778899999999997 9999999999767 68999994
No 32
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.16 E-value=3.8e-10 Score=123.08 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=119.8
Q ss_pred cceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 002799 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (879)
||++ ++-....|. .++++++..+..+.++.++..+++||....+.|+++|||+|++..+... ++..
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~~ 126 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDE------------EELD 126 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCH------------HHHH
Confidence 5654 333344444 4556677776778899999999999999999999999999999998643 1111
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 002799 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (879)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVy 214 (879)
.. -..+++|+|+||..|. ..++++...... ....++ .. .+..+|+||||+ .|..+-|.
T Consensus 127 ~~-~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~e---l~~a~~--------------~~-~~~~~lvEe~I~-~~~E~sv~ 186 (352)
T TIGR01161 127 AA-LQELGFPVVLKARTGGYDGRGQYRIRNEAD---LPQAAK--------------EL-GDRECIVEEFVP-FERELSVI 186 (352)
T ss_pred HH-HHHcCCCEEEEeCCCCCCCCCEEEECCHHH---HHHHHH--------------hc-CCCcEEEEecCC-CCeEEEEE
Confidence 11 1234689999999863 222222221110 111111 11 234799999997 36777776
Q ss_pred EEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCC-cEEEe
Q 002799 215 TVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCD 285 (879)
Q Consensus 215 tVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~-syV~D 285 (879)
++. +++.. -|...- ..++-.......|..+++ +-+++|.++++++|. .++++|++.+.++ +||+|
T Consensus 187 ~~~~~~G~~~~-----~~~~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~E 260 (352)
T TIGR01161 187 VARSADGETAF-----YPVVEN-IHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINE 260 (352)
T ss_pred EEEcCCCCEEE-----ECCccc-EEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEE
Confidence 653 23221 232221 112110111223555654 357889999999998 4999999998555 99999
Q ss_pred cCC
Q 002799 286 VNG 288 (879)
Q Consensus 286 VNG 288 (879)
||-
T Consensus 261 inp 263 (352)
T TIGR01161 261 LAP 263 (352)
T ss_pred ecC
Confidence 994
No 33
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=99.15 E-value=2.2e-10 Score=124.74 Aligned_cols=260 Identities=22% Similarity=0.352 Sum_probs=155.1
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHHhccCCeEEEEeCCcccccCCCccCCCcceeeccccCCCcHHHHHHHHHhcC-C
Q 002799 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRK-P 82 (879)
Q Consensus 4 ~~~~~iGVCaM~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d~~IL~e~ve~wP~~D~lIsf~s~GfpL~kai~y~~lr~-p 82 (879)
.+..+||.|--.||.+|==-+. |--+.+...+++|=-. ++.|+++=--.||+|=...+.--.....+|.+..- .
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~-~~~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v 79 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPS-FIDLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEV 79 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCH-HCCCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTS
T ss_pred ccceEEEEEECHHHHHHhhHHH-HHHHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCe
Confidence 4578999888888765432222 2233444457766544 35566555448999988876433366777777632 4
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhC-------CCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-
Q 002799 83 FLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG- 154 (879)
Q Consensus 83 ~~iNdl~~q~il~DR~~~~qiL~~~-------gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G- 154 (879)
.+|..++++..+.||...|++|++. +|.+|+.+++..+ +. +..+. +.-..+..|+|.||+-+
T Consensus 80 ~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~-~~-------~~~~~--l~~agL~fPlI~KPlvA~ 149 (307)
T PF05770_consen 80 VVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSD-AE-------SLPEL--LKEAGLKFPLICKPLVAC 149 (307)
T ss_dssp EEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSS-HC-------CHHHH--HHCTTS-SSEEEEESB-S
T ss_pred EEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCC-HH-------HHHHH--HHHCCCcccEEeeehhhc
Confidence 7788889999999999999998874 7899999999754 11 11112 22334689999999984
Q ss_pred ---cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeC-CC
Q 002799 155 ---DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-PV 230 (879)
Q Consensus 155 ---edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKS-P~ 230 (879)
+-|...|-|... |-.. + ....+.||||.-+|.=-||||||+. ++...|+| |-
T Consensus 150 Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~-v~~v~R~SLpn 205 (307)
T PF05770_consen 150 GSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDK-VFVVKRPSLPN 205 (307)
T ss_dssp STSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTE-EEEEEEE----
T ss_pred CCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCE-EEEEECCCCCC
Confidence 457777777643 2221 1 2235999999999999999999977 55566666 32
Q ss_pred C-CCee-------e----ecCCCCce-------eeeeeCC--HHHHHHHHHHHHHhCCceeEEEEEeeCC---CcEEEec
Q 002799 231 V-DGVV-------M----RNPDGKEV-------RYPVLLT--PNEKQMAREVCIAFRQAVCGFDLLRCEG---RSYVCDV 286 (879)
Q Consensus 231 ~-DG~v-------r----rN~~gke~-------r~pv~Lt--~eEk~iA~ka~~afgq~VcGfDLLRs~g---~syV~DV 286 (879)
+ .|+. . ++.+-... ...+.+. +.-+++|..+-+++|++..|||++|.++ +.||+||
T Consensus 206 ~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDI 285 (307)
T PF05770_consen 206 VSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDI 285 (307)
T ss_dssp --SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEE
T ss_pred CCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEe
Confidence 2 1111 1 11110000 0011221 2347899999999999999999999854 4789999
Q ss_pred CCccccccchhhHHHH
Q 002799 287 NGWSFVKNSYKYYDDA 302 (879)
Q Consensus 287 NGwSFVK~n~kYYddc 302 (879)
|=|+=+|+-..|+..-
T Consensus 286 NyFPgY~~vp~f~~~l 301 (307)
T PF05770_consen 286 NYFPGYKKVPDFESVL 301 (307)
T ss_dssp EES--TTTSCTHHHHH
T ss_pred ccCCCccCCCChHHHH
Confidence 9998888888998443
No 34
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.14 E-value=2.1e-10 Score=126.05 Aligned_cols=198 Identities=18% Similarity=0.235 Sum_probs=123.1
Q ss_pred CcceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHH-hCCCCCCCEEEEeccCCCccccccccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEED 134 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~-~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (879)
.+|++|+.... .+.. ++..++..+.++..+.++..+++||....+.|. ++|||+|++..+... ++
T Consensus 75 ~id~vi~~~e~-~~~~-~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~------------~~ 140 (395)
T PRK09288 75 KPDYIVPEIEA-IATD-ALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSL------------EE 140 (395)
T ss_pred CCCEEEEeeCc-CCHH-HHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCH------------HH
Confidence 37888876554 3332 344555567666788999999999999999985 789999999988642 22
Q ss_pred eeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeE
Q 002799 135 FVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFI~t~G~DIK 212 (879)
..+.. ..+++|+|+||..|.+ .++++...... ..+.++.+.. .-| ....+|+||||+ .|..+-
T Consensus 141 l~~~~-~~~g~P~VvKP~~g~~s~Gv~~v~~~~e---l~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~s 205 (395)
T PRK09288 141 LRAAV-EEIGYPCVVKPVMSSSGKGQSVVRSPED---IEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEIT 205 (395)
T ss_pred HHHHH-HhcCCCEEEEeCCCcCCCCeEEECCHHH---HHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEE
Confidence 22211 2356899999998861 22222222111 1122221100 001 136799999997 367777
Q ss_pred EEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCC-ceeEEEEEeeCCCcEEE
Q 002799 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (879)
Q Consensus 213 VytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq-~VcGfDLLRs~g~syV~ 284 (879)
|.++.. ..... .| -+.++.+-+-.+...|..|+++.. ++|.++++++|. .++.+|++-+++++||+
T Consensus 206 v~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~vi 279 (395)
T PRK09288 206 LLTVRAVDGGTHFC----AP--IGHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFS 279 (395)
T ss_pred EEEEEcCCCCEEEe----cC--cccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEE
Confidence 776642 22222 12 122222211122334777877654 489999999984 56779999988899999
Q ss_pred ecCC
Q 002799 285 DVNG 288 (879)
Q Consensus 285 DVNG 288 (879)
|+|.
T Consensus 280 Einp 283 (395)
T PRK09288 280 EVSP 283 (395)
T ss_pred EecC
Confidence 9993
No 35
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.09 E-value=4.6e-10 Score=125.35 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=121.2
Q ss_pred cceeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002799 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (879)
Q Consensus 57 ~D~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (879)
+|++|+ +...|+ ......++..+ |+.-++.+...+++||..+.+.|+++|||+|++..+... ++
T Consensus 63 id~vi~--~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 128 (420)
T PRK00885 63 IDLTVV--GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA------------EE 128 (420)
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH------------HH
Confidence 455553 223444 23445666677 445578888999999999999999999999999887532 11
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002799 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (879)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKV 213 (879)
..... ..+++|+|+||..|. -.++++...... ....++.+-+. +.+. +..+.+|+||||+ |..+-|
T Consensus 129 ~~~~~-~~~~~P~VvKP~~~~gs~Gv~~v~~~~e---l~~~~~~~~~~-~~~~------~~~~~vlvEe~i~--G~E~sv 195 (420)
T PRK00885 129 ALAYL-DEKGAPIVVKADGLAAGKGVVVAMTLEE---AKAAVDDMLAG-NKFG------DAGARVVIEEFLD--GEEASF 195 (420)
T ss_pred HHHHH-HHcCCCEEEEeCCCCCCCcEEEeCCHHH---HHHHHHHHhhc-cccc------CCCCeEEEEEccC--CcEEEE
Confidence 21111 134689999999875 122222221111 11122221110 0010 1245799999997 455554
Q ss_pred EEE--CCceeE-EEeee-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhC---C---ceeEEEEEee
Q 002799 214 YTV--GPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRC 277 (879)
Q Consensus 214 ytV--G~~~vh-Ae~RK-SP~~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~~afg---q---~VcGfDLLRs 277 (879)
.++ |..+.. ...|. -...+|.+.-|+.|-+.-.|.. |+++.. +|+.++.++++ . .++.+|++.+
T Consensus 196 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t 275 (420)
T PRK00885 196 FAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMIT 275 (420)
T ss_pred EEEECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEE
Confidence 443 443322 22221 1123666666666555556765 777543 36666777654 3 5677899999
Q ss_pred CCCcEEEecCC
Q 002799 278 EGRSYVCDVNG 288 (879)
Q Consensus 278 ~g~syV~DVNG 288 (879)
.+++||+|+|.
T Consensus 276 ~~g~~viEin~ 286 (420)
T PRK00885 276 KDGPKVIEFNA 286 (420)
T ss_pred CCCcEEEEEec
Confidence 89999999994
No 36
>PRK07206 hypothetical protein; Provisional
Probab=99.08 E-value=1.5e-09 Score=120.34 Aligned_cols=207 Identities=14% Similarity=0.169 Sum_probs=123.5
Q ss_pred cceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 002799 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (879)
+|++|+..-.+.++... -.+..+++..|+......++||....+.|.++|||+|++..+.... +..+++
T Consensus 71 ~d~vi~~~e~~~~~~a~--l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~---------e~~~~~ 139 (416)
T PRK07206 71 PEAIIAGAESGVELADR--LAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADWE---------EAEAWL 139 (416)
T ss_pred CCEEEECCCccHHHHHH--HHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---------HHHHHH
Confidence 68999875545554332 2344566568999999999999999999999999999999885420 112222
Q ss_pred eecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 002799 137 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (879)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVyt 215 (879)
.-.| -++.|+|+||++|. -.+|++...... ....++.+-+..+.+. ..+..+|+||||+-.--.|-+++
T Consensus 140 ~~~g-~~~~P~VvKP~~g~gs~gv~~v~~~~e---l~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~~ 209 (416)
T PRK07206 140 RENG-LIDRPVVIKPLESAGSDGVFICPAKGD---WKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFVS 209 (416)
T ss_pred HhcC-CCCCCEEEeCCCCCCCCCEEEeCCHHH---HHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEEE
Confidence 2111 01349999999975 234443333221 2223333211111111 12467999999975334555666
Q ss_pred ECCceeE-EEee--eCCCCCCeeeecCCCCceeeee--eCCHHHHHHHHHHHHHhCC--ceeEEEEEeeCCCcEEEecC
Q 002799 216 VGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYPV--LLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 287 (879)
Q Consensus 216 VG~~~vh-Ae~R--KSP~~DG~vrrN~~gke~r~pv--~Lt~eEk~iA~ka~~afgq--~VcGfDLLRs~g~syV~DVN 287 (879)
.+++... +..+ +.+..+|.+... ... ..|. ...++-+++|.++++++|. .++.+|+..+.++++|+|||
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 210 LDGNHLVTEIVRYHKTSLNSGSTVYD--YDE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred ECCEEEEEEeEEeeecccCCCCceec--ccc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 6677543 2232 222222222111 000 0111 1223445678999999998 57899999998999999999
No 37
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.02 E-value=3.8e-09 Score=116.79 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=121.1
Q ss_pred CcceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002799 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (879)
.||++ +|-....|. .++++++.. ..+.++.++..+++||...-+.|+++|||+|++..+... ++.
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~------------~~l 127 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSA------------EDL 127 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 57764 443444554 566666655 567899999999999999999999999999999998642 122
Q ss_pred eeecCeeccCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002799 136 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (879)
Q Consensus 136 i~v~g~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKV 213 (879)
... ...++.|+|+||..| . -+++++...... ....+..+ ....+|+||||+- |..+-|
T Consensus 128 ~~~-~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 128 EAA-LADLGLPAVLKTRRGGYDGKGQWVIRSAED---LEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HHH-HHHcCCcEEEEeCCCCcCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 111 123568999999984 3 233333322111 11122211 2457999999984 667777
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCC-cEEEecC
Q 002799 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (879)
Q Consensus 214 ytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~-syV~DVN 287 (879)
.+++.. .-+.+--|+.. .+.+|--......|..+++ +-+++|.++++++|.. +++||++.+.++ +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 666431 00111223211 1222100011123445554 5678899999999964 888999998555 9999999
Q ss_pred Cc
Q 002799 288 GW 289 (879)
Q Consensus 288 Gw 289 (879)
--
T Consensus 265 pR 266 (372)
T PRK06019 265 PR 266 (372)
T ss_pred CC
Confidence 53
No 38
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.01 E-value=1.1e-09 Score=135.98 Aligned_cols=198 Identities=17% Similarity=0.264 Sum_probs=128.8
Q ss_pred CcceeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (879)
..|.+|+.++.-.++ .....++..+. +.-|+.++..+++||.+..++|+++|||+|++..+... ++
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~------------ee 695 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSV------------EE 695 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCH------------HH
Confidence 358888888766665 44455667774 45588999999999999999999999999999998542 12
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC-CceeE
Q 002799 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 212 (879)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~-G~DIK 212 (879)
..... ..+++|+|+||..|. -.++++.+.... ....+... .....+..+|+||||+-. .-+|-
T Consensus 696 ~~~~~-~~igyPvvVKP~~~~Gg~Gv~iv~~~ee---L~~~~~~a-----------~~~s~~~~vlIEefI~G~~E~sV~ 760 (1066)
T PRK05294 696 ALEVA-EEIGYPVLVRPSYVLGGRAMEIVYDEEE---LERYMREA-----------VKVSPDHPVLIDKFLEGAIEVDVD 760 (1066)
T ss_pred HHHHH-HhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHH-----------HhhCCCCcEEEEecCCCCEEEEEE
Confidence 22211 235689999998875 122222221110 11111110 011245679999999764 66888
Q ss_pred EEEECCce-eEE-EeeeCCCCCCeeeecCCCCceee---eeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEeeCCCcE
Q 002799 213 VYTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (879)
Q Consensus 213 VytVG~~~-vhA-e~RKSP~~DG~vrrN~~gke~r~---pv~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs~g~sy 282 (879)
++.-|..+ +.+ +.+..+ ...|.|+... +..|+++ -+++|.++++++|. .+++||++..++++|
T Consensus 761 ~v~dg~~v~i~~i~e~i~~-------~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~y 833 (1066)
T PRK05294 761 AICDGEDVLIGGIMEHIEE-------AGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVY 833 (1066)
T ss_pred EEecCCeEEEeeeEEeeee-------ccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEE
Confidence 87766532 222 233221 2345454433 3467754 46688899999997 466799999999999
Q ss_pred EEecCC
Q 002799 283 VCDVNG 288 (879)
Q Consensus 283 V~DVNG 288 (879)
|+|||.
T Consensus 834 ViEiNp 839 (1066)
T PRK05294 834 VIEVNP 839 (1066)
T ss_pred EEEEec
Confidence 999995
No 39
>PRK05586 biotin carboxylase; Validated
Probab=99.00 E-value=1.2e-09 Score=123.43 Aligned_cols=205 Identities=18% Similarity=0.248 Sum_probs=121.2
Q ss_pred CCcceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccc
Q 002799 55 PICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFI 130 (879)
Q Consensus 55 P~~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~ 130 (879)
..||++++-| ||-. ...-+.++..+ ||+..+.++..+++||....++|+++|||+|++... -.+
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~---------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN---------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC----------
Confidence 5688888765 3322 12223344555 468899999999999999999999999999987532 111
Q ss_pred cccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 002799 131 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (879)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~ 209 (879)
.++..... ..+++|+|+||++|. -.++++..... -....|+...+.+ .....++.+|+||||.. ++
T Consensus 141 -~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~---el~~a~~~~~~~~-------~~~~~~~~vivEe~i~g-~~ 207 (447)
T PRK05586 141 -EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEE---ELIKAFNTAKSEA-------KAAFGDDSMYIEKFIEN-PK 207 (447)
T ss_pred -HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHH---HHHHHHHHHHHHH-------HHhcCCCeEEEEecCCC-Ce
Confidence 12222211 235789999999986 12222222111 1122222211000 00012467999999963 47
Q ss_pred eeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCH----HHHHHHHHHHHHhCCceeE-EEEEee-CC
Q 002799 210 DVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAVCG-FDLLRC-EG 279 (879)
Q Consensus 210 DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~~afgq~VcG-fDLLRs-~g 279 (879)
.+-|.++++ ++++.-.|... ..++|..--+.. |. .|++ +-+++|.++++++|..-++ ||++.+ +|
T Consensus 208 ei~v~v~~d~~G~~~~~~~~~~~----~~~~~~~~~~~~-p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g 282 (447)
T PRK05586 208 HIEFQILGDNYGNVVHLGERDCS----LQRRNQKVLEEA-PSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDG 282 (447)
T ss_pred EEEEEEEECCCCCEEEEeceecc----eEecccceEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCC
Confidence 788877763 55555444221 122221111111 22 3666 3457899999999966554 999987 45
Q ss_pred CcEEEecCCc
Q 002799 280 RSYVCDVNGW 289 (879)
Q Consensus 280 ~syV~DVNGw 289 (879)
.+||||||.-
T Consensus 283 ~~~~iEvNpR 292 (447)
T PRK05586 283 NFYFMEMNTR 292 (447)
T ss_pred CEEEEEEECC
Confidence 5899999943
No 40
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.99 E-value=1.2e-09 Score=124.75 Aligned_cols=205 Identities=16% Similarity=0.199 Sum_probs=122.5
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEE-EeccCCCcccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL-VNREVPYQELDYFIE 131 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~-~~r~~p~~~~~~~~e 131 (879)
.+|++++.| ||-. ..+.+.++..+. |+-++.++..+++||....++|.++|||+|.... .... +
T Consensus 73 ~iDaI~pg~--g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~----------~ 140 (478)
T PRK08463 73 GADAIHPGY--GFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSE----------S 140 (478)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCC----------C
Confidence 478888866 3321 123455556664 4458999999999999999999999999977433 2211 0
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~D 210 (879)
.++.... -..+++|+|+||.+|. ..++++-..... ....|+... ++ ......++.+++|+||.. ++.
T Consensus 141 ~~~~~~~-~~~igyPvvvKP~~ggGg~Gv~iv~~~~e---L~~a~~~~~---~~----a~~~~~~~~vlvEefI~~-~~~ 208 (478)
T PRK08463 141 MEEIKIF-ARKIGYPVILKASGGGGGRGIRVVHKEED---LENAFESCK---RE----ALAYFNNDEVFMEKYVVN-PRH 208 (478)
T ss_pred HHHHHHH-HHHhCCCEEEEeCCCCCCCceEEeCCHHH---HHHHHHHHH---HH----HHHhcCCCcEEEEecCCC-CeE
Confidence 1122221 1235689999999985 122222221111 111222110 00 001123567999999975 676
Q ss_pred eEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHHHH----HHHHHHHHHhCCceeE-EEEEeeC-CC
Q 002799 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GR 280 (879)
Q Consensus 211 IKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs~-g~ 280 (879)
+-+-++|. +++|...|.... .+++..--+.. |. .|+++.+ ++|.++++++|..-+| ||++.+. |+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~ 283 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR 283 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCC
Confidence 77666654 466666664321 22222111222 22 4777665 4899999999977666 9999874 78
Q ss_pred cEEEecCCc
Q 002799 281 SYVCDVNGW 289 (879)
Q Consensus 281 syV~DVNGw 289 (879)
+||||||.=
T Consensus 284 ~y~iEiN~R 292 (478)
T PRK08463 284 FYFMEMNTR 292 (478)
T ss_pred EEEEEEECC
Confidence 999999943
No 41
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.98 E-value=2.6e-09 Score=130.31 Aligned_cols=204 Identities=14% Similarity=0.078 Sum_probs=128.8
Q ss_pred CccCCCcceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 002799 51 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (879)
Q Consensus 51 ve~wP~~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~ 130 (879)
+..++.+|.++++.-.+.+ -|-+-++..+.+ -|+.++..+++||....+.|+++|||+|++..++..
T Consensus 65 ~~~~~~i~~V~~~se~~v~--~aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~---------- 131 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYFIE--VASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALR---------- 131 (887)
T ss_pred HHhcCCCCEEEeCchhhHH--HHHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCH----------
Confidence 4566677888887433333 344444555544 378899999999999999999999999999988643
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002799 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (879)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~D 210 (879)
++..... ..+++|+|+||++|.. ...|+...+.. -....+..+. . ...+.||+||||+-.--.
T Consensus 132 --~e~~~~~-~~~~~PvVVKP~~g~g-S~GV~~v~~~~-el~~a~~~~~-----------~-~~~~~~lvEEfI~G~E~s 194 (887)
T PRK02186 132 --AVALDAL-DGLTYPVVVKPRMGSG-SVGVRLCASVA-EAAAHCAALR-----------R-AGTRAALVQAYVEGDEYS 194 (887)
T ss_pred --HHHHHHH-HhCCCCEEEEeCCCCC-CCCeEEECCHH-HHHHHHHHHH-----------h-cCCCcEEEeecccCCcEE
Confidence 1221111 2346899999999861 11222222210 0111111110 0 126789999999855456
Q ss_pred eEEEEECCc-eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCC--ceeEEEEEeeCCCcEE
Q 002799 211 VKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ--AVCGFDLLRCEGRSYV 283 (879)
Q Consensus 211 IKVytVG~~-~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afgq--~VcGfDLLRs~g~syV 283 (879)
|-+++.++. .+.+..++.......|.- .+.-+|..++++ -.+++.++++++|. .++++|+..+.+++||
T Consensus 195 Ve~i~~~g~~~i~~i~~k~~~~~~~~ve----~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~~l 270 (887)
T PRK02186 195 VETLTVARGHQVLGITRKHLGPPPHFVE----IGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVVI 270 (887)
T ss_pred EEEEEECCcEEEEEEEeeecCCCCCeEE----eccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCEEE
Confidence 666766443 455556654211112211 112356677754 45788999999998 5689999999999999
Q ss_pred EecCC
Q 002799 284 CDVNG 288 (879)
Q Consensus 284 ~DVNG 288 (879)
+|||.
T Consensus 271 iEIn~ 275 (887)
T PRK02186 271 IEINP 275 (887)
T ss_pred EEECC
Confidence 99994
No 42
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.98 E-value=1.8e-09 Score=123.13 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=122.6
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCcccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 131 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e 131 (879)
.||++++-| ||-- ..+.+.++..+ ||+-++.+...+++||....++|+++|||+|.+... ..+
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~----------- 139 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLAD----------- 139 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCC-----------
Confidence 478888855 3321 23445556666 466789999999999999999999999999877542 111
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccc---cccccccCcceEEeeccCCCC
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---DVRRVRREGSYIYEEFMPTGG 208 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p---~~~~~r~~gsyIyQEFI~t~G 208 (879)
.++..... ..+++|+|+||.+|. -|.|+. +.+....-...|+- +......+..+++|+||. ++
T Consensus 140 ~~e~~~~~-~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~ 205 (472)
T PRK07178 140 LDEALAEA-ERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NP 205 (472)
T ss_pred HHHHHHHH-HHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CC
Confidence 12222211 245789999999986 233332 22211100000000 000001244688999995 47
Q ss_pred ceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCc-eeEEEEEee-CC
Q 002799 209 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EG 279 (879)
Q Consensus 209 ~DIKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~-VcGfDLLRs-~g 279 (879)
+.+-|-++| ++++|...|... ..+++..-.|..-...|+++.+ ++|.++++++|.. ++.||++.+ +|
T Consensus 206 ~eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g 281 (472)
T PRK07178 206 KHIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADG 281 (472)
T ss_pred eEEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCC
Confidence 777776664 356666555431 1233333223321226777654 5999999999975 445999995 67
Q ss_pred CcEEEecCCc
Q 002799 280 RSYVCDVNGW 289 (879)
Q Consensus 280 ~syV~DVNGw 289 (879)
++||+|||.-
T Consensus 282 ~~y~iEiNpR 291 (472)
T PRK07178 282 EVYFMEMNTR 291 (472)
T ss_pred CEEEEEEeCC
Confidence 8999999943
No 43
>PRK08462 biotin carboxylase; Validated
Probab=98.97 E-value=1.1e-09 Score=123.32 Aligned_cols=203 Identities=18% Similarity=0.230 Sum_probs=118.4
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCcccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 131 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e 131 (879)
.+|++++-++ |.- ....+.++..|. ++-++.++..+++||..+.+.|.++|||+|.+... -.+
T Consensus 76 ~~D~i~pg~g--~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~----------- 142 (445)
T PRK08462 76 EADAIFPGYG--FLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS----------- 142 (445)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC-----------
Confidence 3788888773 311 233356777774 67799999999999999999999999999886532 111
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~D 210 (879)
.++.... -..+++|+|+||.+|. -.++++-..... ....|+... ++. .....++.+|+||||.. ++.
T Consensus 143 ~~~~~~~-~~~~g~PvvvKP~~g~gs~Gv~~v~~~~e---L~~~~~~~~---~~~----~~~~~~~~vlvEe~i~g-~~e 210 (445)
T PRK08462 143 YEEAKKI-AKEIGYPVILKAAAGGGGRGMRVVEDESD---LENLYLAAE---SEA----LSAFGDGTMYMEKFINN-PRH 210 (445)
T ss_pred HHHHHHH-HHHcCCCEEEEeCCCCCCCCeEEECCHHH---HHHHHHHHH---HHH----HhccCCCcEEEeccCCC-CeE
Confidence 1111111 1235689999999986 122222111110 111111110 000 00013567999999964 666
Q ss_pred eEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCH----HHHHHHHHHHHHhCCce-eEEEEEee-CCC
Q 002799 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAV-CGFDLLRC-EGR 280 (879)
Q Consensus 211 IKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~~afgq~V-cGfDLLRs-~g~ 280 (879)
+.|.++|. ++++.-.|.... .+++..--+. .|. .|++ +-+++|.++++++|..- +-||++.+ +|+
T Consensus 211 ~~v~v~~~~~g~~~~~g~~~~~~----~~~~~~~~~~-~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~ 285 (445)
T PRK08462 211 IEVQILGDKHGNVIHVGERDCSL----QRRHQKLIEE-SPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLD 285 (445)
T ss_pred EEEEEEECCCCCEEEEEeccccc----eecccceEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCC
Confidence 88877753 444443222210 1111100011 122 4554 55778999999999853 34999987 468
Q ss_pred cEEEecCC
Q 002799 281 SYVCDVNG 288 (879)
Q Consensus 281 syV~DVNG 288 (879)
+||+|||.
T Consensus 286 ~~viEiNp 293 (445)
T PRK08462 286 FYFMEMNT 293 (445)
T ss_pred EEEEEEEC
Confidence 99999993
No 44
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.96 E-value=1.3e-09 Score=107.44 Aligned_cols=148 Identities=24% Similarity=0.318 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHH
Q 002799 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 173 (879)
Q Consensus 94 l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 173 (879)
+.||+++++.|+++|||+|.++...... . ..+|+|+||..|. -|.|..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~---------------~-----~~~~~viKp~~G~-----------Gg~~i~- 48 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE---------------P-----IDGPWVIKPRDGA-----------GGEGIR- 48 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS------------------B-
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc---------------c-----cCCcEEEEeCCCC-----------CCCCeE-
Confidence 4699999999999999999555443220 0 1369999999997 333332
Q ss_pred HHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeeeCCCC-CCeeeecCCCCce-eeee
Q 002799 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVV-DGVVMRNPDGKEV-RYPV 248 (879)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~---~vhAe~RKSP~~-DG~vrrN~~gke~-r~pv 248 (879)
.++.- +.... . .....|+||||+ |+-.-+.++.+. .+-+..|+-=.. ++.|+ .+|++ ....
T Consensus 49 ~~~~~----~~~~~---~--~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~---~~G~~~~~~~ 114 (161)
T PF02655_consen 49 IVDSE----DELEE---F--LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFR---YCGGIVPADT 114 (161)
T ss_dssp --SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TE---EEEEEES---
T ss_pred EECCc----hhhcc---c--cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceee---ecccccccCC
Confidence 33311 11111 1 111129999997 565555555433 344555553100 11122 22222 2223
Q ss_pred eCCHHHHHHHHHHHHHh-CC-ceeEEEEEeeCCCcEEEecC
Q 002799 249 LLTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVN 287 (879)
Q Consensus 249 ~Lt~eEk~iA~ka~~af-gq-~VcGfDLLRs~g~syV~DVN 287 (879)
...++-.++|.+++++| |+ ..+|||++.+.+++||+|||
T Consensus 115 ~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 115 PLKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred chHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 34667788999999999 75 69999999999999999999
No 45
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.94 E-value=1.1e-08 Score=126.84 Aligned_cols=199 Identities=18% Similarity=0.256 Sum_probs=128.2
Q ss_pred CcceeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (879)
.+|.+|+.++.-.++ .+-..++..+. +.-|+.++...+.||.+..++|+++|||+|++..+... ++
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~------------ee 695 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV------------EE 695 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH------------HH
Confidence 368888877654443 22233445564 44589999999999999999999999999999998642 12
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC-CCceeE
Q 002799 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212 (879)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t-~G~DIK 212 (879)
..... ..+++|+|+||..|. ..++.+.+.... ....++.+. ....++.+|+||||+. .--+|-
T Consensus 696 ~~~~~-~~igyPvIVKP~~~~Gg~gv~iv~~~ee---L~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd 760 (1050)
T TIGR01369 696 AVEFA-SEIGYPVLVRPSYVLGGRAMEIVYNEEE---LRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVD 760 (1050)
T ss_pred HHHHH-HhcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEE
Confidence 22211 234689999999874 133333332111 111122110 1124567999999974 446788
Q ss_pred EEEECCceeEEE-eeeCCCCCCeeeecCCCCceee--ee-eCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 002799 213 VYTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVRY--PV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (879)
Q Consensus 213 VytVG~~~vhAe-~RKSP~~DG~vrrN~~gke~r~--pv-~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV 283 (879)
++..|++++.+. ...- .+.+.|.|.... |. .|++ +-+++|.++++++|. .++.||++...+++||
T Consensus 761 ~l~d~g~v~i~~i~e~~------~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yv 834 (1050)
T TIGR01369 761 AVSDGEEVLIPGIMEHI------EEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYV 834 (1050)
T ss_pred EEEeCCEEEEEEEEEee------cccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEE
Confidence 888887765432 1111 123456555433 32 5676 456788999999994 4556999999999999
Q ss_pred EecCC
Q 002799 284 CDVNG 288 (879)
Q Consensus 284 ~DVNG 288 (879)
+|||.
T Consensus 835 IEvNp 839 (1050)
T TIGR01369 835 IEVNP 839 (1050)
T ss_pred EEEeC
Confidence 99994
No 46
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.94 E-value=2.3e-09 Score=123.52 Aligned_cols=203 Identities=15% Similarity=0.216 Sum_probs=123.4
Q ss_pred cceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccc
Q 002799 57 CDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEE 132 (879)
Q Consensus 57 ~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~ 132 (879)
+|++++.| ||.. ....+.++..+ +|+-++.++..+++||..+.++|+++|||+|..... -.+ .
T Consensus 75 ~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~-----------~ 141 (499)
T PRK08654 75 ADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIED-----------I 141 (499)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCC-----------H
Confidence 68888876 3332 13445565666 456789999999999999999999999999876643 111 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002799 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIK 212 (879)
++.... -..+++|+|+||..|.. +..|+.-.+.- -....|+... ++-. ..+ .++.+++|+||.. ++.|-
T Consensus 142 ~e~~~~-a~~igyPvvIKp~~GgG-G~Gv~iv~~~~-eL~~a~~~~~---~~a~---~~f-~~~~v~vE~~I~~-~r~ie 210 (499)
T PRK08654 142 EEAKEI-AEEIGYPVIIKASAGGG-GIGMRVVYSEE-ELEDAIESTQ---SIAQ---SAF-GDSTVFIEKYLEK-PRHIE 210 (499)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCC-CCeEEEeCCHH-HHHHHHHHHH---HHHH---HhC-CCCeEEEEeCCCC-CcEEE
Confidence 222221 12456899999999861 11222111110 0111222111 0000 011 2567899999964 67788
Q ss_pred EEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHH----HHHHHHHHHHHhCCceeE-EEEEeeCCCcEE
Q 002799 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQAVCG-FDLLRCEGRSYV 283 (879)
Q Consensus 213 VytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~e----Ek~iA~ka~~afgq~VcG-fDLLRs~g~syV 283 (879)
|-++|+ +++|.-.|...+ -|++..--|.. |. .|+++ -+++|.++++++|..=+| ||++..+|++||
T Consensus 211 Vqvl~d~~G~vv~l~~recsi----qrr~qk~ie~~-Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~yf 285 (499)
T PRK08654 211 IQILADKHGNVIHLGDRECSI----QRRHQKLIEEA-PSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYF 285 (499)
T ss_pred EEEEEcCCCCEEEEeeecccc----ccCccceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcEEE
Confidence 877764 466666664321 12221111111 21 35553 367899999999987666 999998889999
Q ss_pred EecCC
Q 002799 284 CDVNG 288 (879)
Q Consensus 284 ~DVNG 288 (879)
+|||.
T Consensus 286 lEiNp 290 (499)
T PRK08654 286 LEMNT 290 (499)
T ss_pred EEEEC
Confidence 99995
No 47
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.91 E-value=2.4e-09 Score=120.40 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=117.3
Q ss_pred CcceeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e~ 132 (879)
.||++++.++--.--..+.+.++..+. |+.++.++..+++||....+.|+++|||+|.+. .+...
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~------------ 141 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDE------------ 141 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCH------------
Confidence 389999877311111234555667774 567999999999999999999999999998864 23211
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002799 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIK 212 (879)
++.... -..+++|+|+||++|.. ...|+.-.+.. -....++.+...+ . ....+..+++||||+. ++.+-
T Consensus 142 ~~~~~~-~~~~g~PvvvKP~~g~g-s~Gv~iv~~~~-el~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~~ 210 (451)
T PRK08591 142 EEALAI-AKEIGYPVIIKATAGGG-GRGMRVVRTEA-ELEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHIE 210 (451)
T ss_pred HHHHHH-HHHcCCCEEEEECCCCC-CceEEEECCHH-HHHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEEE
Confidence 122221 12356899999999861 22222222210 0112222210000 0 0012456899999964 55566
Q ss_pred EEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCC----HHHHHHHHHHHHHhCCc-eeEEEEEee-CCCcEE
Q 002799 213 VYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYV 283 (879)
Q Consensus 213 VytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt----~eEk~iA~ka~~afgq~-VcGfDLLRs-~g~syV 283 (879)
|-++| +++++.-.|.... .+++..-.+..-+..|+ .+-.++|.++++++|.. ++.||++.+ +|++||
T Consensus 211 v~v~~d~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~v 286 (451)
T PRK08591 211 IQVLADGHGNAIHLGERDCSL----QRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYF 286 (451)
T ss_pred EEEEEcCCCCEEEEecccccc----eecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEE
Confidence 55554 3455443222110 01110000000011345 45567899999999965 445999988 677999
Q ss_pred EecCC
Q 002799 284 CDVNG 288 (879)
Q Consensus 284 ~DVNG 288 (879)
+|||.
T Consensus 287 iEINp 291 (451)
T PRK08591 287 IEMNT 291 (451)
T ss_pred EEEEC
Confidence 99995
No 48
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.91 E-value=7.1e-09 Score=116.29 Aligned_cols=203 Identities=13% Similarity=0.153 Sum_probs=116.4
Q ss_pred cceeeccccCCCc-H-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccc
Q 002799 57 CDCLIAFYSSGYP-L-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEE 132 (879)
Q Consensus 57 ~D~lIsf~s~Gfp-L-~kai~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~ 132 (879)
+|++++.+ |+. . ..+...++..+. +.-++.++..+++||....+.|.++|||+|++... ..+ .
T Consensus 75 id~I~p~~--~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~-----------~ 141 (450)
T PRK06111 75 AEAIHPGY--GLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLED-----------A 141 (450)
T ss_pred CCEEEeCC--CccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCC-----------H
Confidence 36777654 121 1 124455666664 45688999999999999999999999999987322 111 1
Q ss_pred cceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 002799 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (879)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DI 211 (879)
++..... ..+++|+|+||.+|. -+++++...... ....++....... ....++.+|+||||.- +..+
T Consensus 142 ~e~~~~~-~~~~~P~VvKP~~g~gs~Gv~iv~~~~e---l~~a~~~~~~~~~-------~~~~~~~~lvEe~i~g-~~e~ 209 (450)
T PRK06111 142 EEAIAIA-RQIGYPVMLKASAGGGGIGMQLVETEQE---LTKAFESNKKRAA-------NFFGNGEMYIEKYIED-PRHI 209 (450)
T ss_pred HHHHHHH-HHhCCCEEEEeCCCCCCceEEEECCHHH---HHHHHHHHHHHHH-------HhcCCCcEEEEcccCC-CcEE
Confidence 1221111 235689999999985 244444433221 2223332210000 0012457999999973 3456
Q ss_pred EEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeee-eCC----HHHHHHHHHHHHHhCC-ceeEEEEEeeCCC-c
Q 002799 212 KVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-S 281 (879)
Q Consensus 212 KVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs~g~-s 281 (879)
-+-+++ ++.++.-.|..+. .+.+..--+. .|. .++ .+-+++|.++++++|. .++.||++.+.++ +
T Consensus 210 ~v~v~~~~~g~~~~~~~~~~~~----~~~~~~~~~~-~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~ 284 (450)
T PRK06111 210 EIQLLADTHGNTVYLWERECSV----QRRHQKVIEE-APSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNF 284 (450)
T ss_pred EEEEEEcCCCCEEEEEeecccc----cccccceEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCE
Confidence 654443 3344443333221 0101000000 011 133 3556889999999998 5777999988666 9
Q ss_pred EEEecCCc
Q 002799 282 YVCDVNGW 289 (879)
Q Consensus 282 yV~DVNGw 289 (879)
||+|||.-
T Consensus 285 ~viEiN~R 292 (450)
T PRK06111 285 YFLEMNTR 292 (450)
T ss_pred EEEEEECC
Confidence 99999954
No 49
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.88 E-value=8.1e-09 Score=115.11 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=116.9
Q ss_pred cceeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002799 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (879)
Q Consensus 57 ~D~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (879)
+|++|+... .++ ..+.+.++..+ |++-++..+..+++||....++|+++|||+|++..+... ++
T Consensus 65 id~vi~~~e--~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~ 130 (423)
T TIGR00877 65 IDLAVIGPE--APLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP------------EE 130 (423)
T ss_pred CCEEEECCc--hHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 566775432 333 34566777778 556689999999999999999999999999999888642 12
Q ss_pred eeeecCeeccCc-EEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002799 135 FVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 135 ~i~v~g~~~~kP-fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIK 212 (879)
..+.- ..++.| +|+||..|. -.++.+...... ....++.+-+.+ +. ..+..+|+||||. |..+-
T Consensus 131 ~~~~~-~~~g~P~~VvKp~~~~gg~Gv~~v~~~~e---l~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 131 ALSYI-QEKGAPAIVVKADGLAAGKGVIVAKTNEE---AIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHHHH-HhcCCCeEEEEECCCCCCCCEEEECCHHH---HHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 22211 234689 999999875 122222221111 111222111100 00 1245799999997 55665
Q ss_pred EEEE--CCceeE-EEeeeC-CCCCCeeeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhC------CceeEEEEEe
Q 002799 213 VYTV--GPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 276 (879)
Q Consensus 213 VytV--G~~~vh-Ae~RKS-P~~DG~vrrN~~gke~r~pv-~Lt~e-----Ek~iA~ka~~afg------q~VcGfDLLR 276 (879)
|.++ |..+.. ...|.- ...+|..--++.+-+.-.|. .++++ .++++.++.++++ -.++.+|++.
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 5544 443332 122211 11122221121111122232 25443 2456666777774 3678899999
Q ss_pred eCCCcEEEecCC
Q 002799 277 CEGRSYVCDVNG 288 (879)
Q Consensus 277 s~g~syV~DVNG 288 (879)
+.+++||||||.
T Consensus 277 t~~g~~viEin~ 288 (423)
T TIGR00877 277 TKEGPKVLEFNC 288 (423)
T ss_pred ECCCcEEEEEEc
Confidence 988899999993
No 50
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.87 E-value=7.9e-09 Score=111.41 Aligned_cols=187 Identities=24% Similarity=0.289 Sum_probs=121.4
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 002799 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (879)
Q Consensus 86 Ndl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (879)
|+-..-.++.||....+++.+.|||+|..++..... -.........++..+.-...-..+||+||..|+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRD-YFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccce-EEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 888888899999999999999999999965532210 000000111122222211111269999999997
Q ss_pred CCCChHHHHHhhcCCCccccccccc----ccccCc--ceEEeeccCC---------CC-ceeEEEEE----CCceeEEEe
Q 002799 166 SAGGGMKELFRKVGNRSSEFHPDVR----RVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAEA 225 (879)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~----~~r~~g--syIyQEFI~t---------~G-~DIKVytV----G~~~vhAe~ 225 (879)
.|.|+- ++...+. ..+..... .....+ .||+||||.- .+ -+|||.|+ ++.++.|+.
T Consensus 85 -~G~Gi~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~l 160 (285)
T PF14397_consen 85 -GGKGIL-VIDRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAML 160 (285)
T ss_pred -CccCEE-EEEeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEE
Confidence 555543 2221110 01111111 111222 8999999863 12 68999999 346789999
Q ss_pred eeCCCCCCeeeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-CCcee
Q 002799 226 RKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAVC 270 (879)
Q Consensus 226 RKSP~~DG~vrrN~~gke~r~pv~Lt----------------------------------~eEk~iA~ka~~af-gq~Vc 270 (879)
|-+. .|...-|.|.|++..+|.+. ++-.++|.++++.| ++.+.
T Consensus 161 Rlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~i 238 (285)
T PF14397_consen 161 RLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYI 238 (285)
T ss_pred EeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeE
Confidence 9984 77777888877765544332 34567889999887 57999
Q ss_pred EEEEEeeCCCcEEEecCCc
Q 002799 271 GFDLLRCEGRSYVCDVNGW 289 (879)
Q Consensus 271 GfDLLRs~g~syV~DVNGw 289 (879)
|+|+.-+.+||+++|.|..
T Consensus 239 GWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 239 GWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEcCCCcEEEEeeCC
Confidence 9999999888999999965
No 51
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=98.86 E-value=6.8e-09 Score=107.15 Aligned_cols=50 Identities=42% Similarity=0.495 Sum_probs=41.7
Q ss_pred HHHHHHHhc--CCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhhhcccC
Q 002799 494 VNEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (879)
Q Consensus 494 Ae~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~leg 547 (879)
+.+||+.|| |+ +++.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 27 ~~~~G~~lr~~y~----~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 27 AFELGRYFRQRYG----ELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred HHHHHHHHHHHHH----HhcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 678999999 85 344445567789999999999999999999999998665
No 52
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.86 E-value=9.2e-09 Score=116.18 Aligned_cols=202 Identities=16% Similarity=0.206 Sum_probs=115.0
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 130 (879)
.||++++-+ ||-- ....+.++..+ ||+.++.++..+++||....++|+++|||+|.+. ++..
T Consensus 74 ~id~I~pg~--g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~----------- 140 (449)
T TIGR00514 74 GADAIHPGY--GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVED----------- 140 (449)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCC-----------
Confidence 588888866 2211 11234455666 4677999999999999999999999999998865 2321
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002799 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (879)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~D 210 (879)
.++..... ..+++|+|+||++|. -...|+.-.+.- -....++.....+ .....++.+|+||||.. ++.
T Consensus 141 -~~e~~~~~-~~ig~PvvvKP~~g~-gs~Gv~~v~~~~-el~~~~~~~~~~~-------~~~~~~~~vlvEe~i~g-~~e 208 (449)
T TIGR00514 141 -EEENVRIA-KRIGYPVIIKATAGG-GGRGMRVVREPD-ELVKSISMTRAEA-------KAAFGNDGVYIEKYIEN-PRH 208 (449)
T ss_pred -HHHHHHHH-HHhCCCEEEEeCCCC-CCCccEEECCHH-HHHHHHHHHHHHH-------HHhCCCCCEEEEECCCC-CeE
Confidence 11222111 235689999999986 112222221110 0111121110000 00013456999999953 566
Q ss_pred eEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEee-CC
Q 002799 211 VKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-EG 279 (879)
Q Consensus 211 IKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs-~g 279 (879)
+-|-+++ ++.++...|-. .+.+. +.+-. .-+..|++ +-+++|.++++++|.. ++.||++.+ +|
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g 282 (449)
T TIGR00514 209 VEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNG 282 (449)
T ss_pred EEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCC
Confidence 6665554 34444432211 01110 11111 11124555 4456789999999974 556999987 67
Q ss_pred CcEEEecCC
Q 002799 280 RSYVCDVNG 288 (879)
Q Consensus 280 ~syV~DVNG 288 (879)
.+||+|||.
T Consensus 283 ~~~viEiNp 291 (449)
T TIGR00514 283 EFYFMEMNT 291 (449)
T ss_pred CEEEEEEEC
Confidence 789999994
No 53
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.83 E-value=1.7e-08 Score=114.54 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=121.9
Q ss_pred cceeeccccCCCcHHH-HHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEE-EEeccCCCcccccccccc
Q 002799 57 CDCLIAFYSSGYPLEK-AESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 133 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~k-ai~y~~lr~p~~-iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~-~~~r~~p~~~~~~~~e~~ 133 (879)
+|.+|+.. .-||.. ....++..+..+ ..+.++-.+.+||..+.+.|.++|||+|.+. .+... +
T Consensus 66 id~Vi~~~--d~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~------------~ 131 (435)
T PRK06395 66 VDIVFVGP--DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSE------------K 131 (435)
T ss_pred CCEEEECC--ChHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCCh------------H
Confidence 68888753 335533 344555567555 4889999999999999999999999998654 44221 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCCCCceeE
Q 002799 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFI~t~G~DIK 212 (879)
+..... ..++.|+|+||..+. .|-|+........+....++. ...+ ..++.+|+||||.-.=-.|=
T Consensus 132 e~~~~~-~~~~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~-~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 132 DAARDY-ITSMKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRY-AIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHHH-HhhCCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHH-HHHHhCCCCcEEEEeecCCceEEEE
Confidence 111111 123579999999987 566665222111111111110 0011 34567999999964334556
Q ss_pred EEEECCceeEE-Eeee-CCCCCCeeeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhCC------ceeEEEEE
Q 002799 213 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 275 (879)
Q Consensus 213 VytVG~~~vhA-e~RK-SP~~DG~vrrN~~gke~r~-----pv~Lt~eEk----~iA~ka~~afgq------~VcGfDLL 275 (879)
+|+-|..+..- ..+. -.+.||++--|+.|=+.-. +-.|++++. +|+.+++++++. .+..++++
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 67766664221 1110 0113665544544323111 112776554 677788899994 45578999
Q ss_pred eeCCCcEEEecC
Q 002799 276 RCEGRSYVCDVN 287 (879)
Q Consensus 276 Rs~g~syV~DVN 287 (879)
-+.++|||+|+|
T Consensus 279 lt~~gp~ViE~n 290 (435)
T PRK06395 279 DTPNGVKVIEIN 290 (435)
T ss_pred EeCCCcEEEEEe
Confidence 999999999999
No 54
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.81 E-value=8.5e-09 Score=128.51 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=121.7
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCcccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 131 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e 131 (879)
.+|++++-| ||-- ....+.++..+ +|+-++.+...+++||..+.+++.++|||+|..... ..+
T Consensus 74 ~iDaI~PGy--GflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~----------- 140 (1143)
T TIGR01235 74 GVDAIHPGY--GFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET----------- 140 (1143)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC-----------
Confidence 368888765 2321 22334455666 566788999999999999999999999999986532 111
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-------ccCcceEEeecc
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-------RREGSYIYEEFM 204 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-------r~~gsyIyQEFI 204 (879)
.++.... ...+++|+|+||..|. -|.|++ . +.+.+ ++..-+... -.++.+++||||
T Consensus 141 ~eea~~~-ae~iGyPvIVKP~~GG-----------GGrG~r-i---V~~~e-EL~~a~~~a~~ea~~~fg~~~vlIEefI 203 (1143)
T TIGR01235 141 MEEVLDF-AAAIGYPVIIKASWGG-----------GGRGMR-V---VRSEA-DVADAFQRAKSEAKAAFGNDEVYVEKLI 203 (1143)
T ss_pred HHHHHHH-HHHcCCCEEEEECCCC-----------CCCccE-E---eCCHH-HHHHHHHHHHHHHHHhcCCCcEEEEEcC
Confidence 1112111 1245689999999986 233332 2 22111 111000000 124678999999
Q ss_pred CCCCceeEEEEECCc---eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEe
Q 002799 205 PTGGTDVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLR 276 (879)
Q Consensus 205 ~t~G~DIKVytVG~~---~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLR 276 (879)
. +++.|.|-++|+. ++|...|...+ -||+..--+..-...|++ +-.++|.++++++|.. ++.||++.
T Consensus 204 ~-g~reIeVqVlgD~~G~vv~l~eRdcsv----qrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlv 278 (1143)
T TIGR01235 204 E-RPRHIEVQLLGDKHGNVVHLFERDCSV----QRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLV 278 (1143)
T ss_pred C-CCeEEEEEEEEeCCCCEEEEEeccccc----cccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE
Confidence 5 4678999888654 67777774421 122211112221124555 4557899999999954 66699998
Q ss_pred e-CCCcEEEecCC
Q 002799 277 C-EGRSYVCDVNG 288 (879)
Q Consensus 277 s-~g~syV~DVNG 288 (879)
. +|++||+|||-
T Consensus 279 d~dg~~yfIEVNP 291 (1143)
T TIGR01235 279 DNDGKFYFIEVNP 291 (1143)
T ss_pred eCCCcEEEEEeec
Confidence 7 46799999993
No 55
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.76 E-value=1.2e-07 Score=111.28 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=123.1
Q ss_pred cceeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 002799 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (879)
||++ ++-....+.+ ++++++..++.+.++.++..+++||...-+.|+++|||+|++..+... ++..
T Consensus 84 ~dvI-t~e~e~v~~~-~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~------------~el~ 149 (577)
T PLN02948 84 CDVL-TVEIEHVDVD-TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDL------------ESAE 149 (577)
T ss_pred CCEE-EEecCCCCHH-HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCH------------HHHH
Confidence 5544 4444455543 558888888777899999999999999999999999999999988542 1111
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 002799 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (879)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVy 214 (879)
. ....+++|+|+||..|. -.++++-..... ....++... ..+..+|.|+||+ ..+.+-|.
T Consensus 150 ~-~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~e---L~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 150 K-AGDLFGYPLMLKSRRLAYDGRGNAVAKTEED---LSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H-HHHhcCCcEEEEeCCCCCCCCCeEEECCHHH---HHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 1 12245789999999753 344444332221 222222221 1234689999994 24677777
Q ss_pred EECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCC-cEEEecCC
Q 002799 215 TVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVNG 288 (879)
Q Consensus 215 tVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~-syV~DVNG 288 (879)
+++..- -+...-|+++- ..+|.-......|..|++ +-+++|.++++++|.. ++.+|++.+.++ .||+|||.
T Consensus 212 v~r~~~--G~i~~~p~~E~-~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInp 288 (577)
T PLN02948 212 VARSRD--GSTRCYPVVET-IHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAP 288 (577)
T ss_pred EEECCC--CCEEEecCccc-EEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeC
Confidence 774210 01111343221 222211112235666776 4567789999999733 557898888554 79999994
Q ss_pred cc
Q 002799 289 WS 290 (879)
Q Consensus 289 wS 290 (879)
-.
T Consensus 289 Rp 290 (577)
T PLN02948 289 RP 290 (577)
T ss_pred CC
Confidence 43
No 56
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.76 E-value=2.2e-07 Score=112.64 Aligned_cols=209 Identities=16% Similarity=0.215 Sum_probs=129.6
Q ss_pred CcceeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002799 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (879)
.+|++++-..-++-. -....++++.+ ||+=.+..+..++.||..+-++|+++|||+|++..+.+..-. .+.+
T Consensus 526 ~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~------~~~~ 599 (809)
T PRK14573 526 KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWK------REPE 599 (809)
T ss_pred cCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcc------cChH
Confidence 467776654222223 36777888888 667779999999999999999999999999999888642100 0001
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 002799 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (879)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFI~t~G~DIK 212 (879)
..+.-.-..+++|+|+||..+- .+.|+. ++.|.+. +..-+. ....+..+|+|||+. +|+.+-
T Consensus 600 ~~~~~~~~~lg~P~iVKP~~~G-----------sS~Gv~----~v~~~~e-l~~a~~~a~~~~~~vlVEe~i~-~grEi~ 662 (809)
T PRK14573 600 LCLAHIVEAFSFPMFVKTAHLG-----------SSIGVF----EVHNVEE-LRDKISEAFLYDTDVFVEESRL-GSREIE 662 (809)
T ss_pred HHHHHHHHhcCCCEEEeeCCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCcEEEEeccC-CCEEEE
Confidence 1111011246789999999974 222332 1222211 111111 112355689999986 389999
Q ss_pred EEEECCce---eE--EEeeeCCCCCCe--eeecC--CCC---ceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEE
Q 002799 213 VYTVGPEY---AH--AEARKSPVVDGV--VMRNP--DGK---EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLL 275 (879)
Q Consensus 213 VytVG~~~---vh--Ae~RKSP~~DG~--vrrN~--~gk---e~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLL 275 (879)
|-++|+.- +. ...+... .+- +..+- +|+ .+.+|..|++ +-+++|.++++++|. .+|.||++
T Consensus 663 v~vl~~~~~~~~~~~~~e~~~~--~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~ 740 (809)
T PRK14573 663 VSCLGDGSSAYVIAGPHERRGS--GGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFF 740 (809)
T ss_pred EEEEeCCCCceEeccceEEccC--CCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 99998752 11 1222221 121 22222 233 2335667775 556788999999995 57789999
Q ss_pred ee-CCCcEEEecCCc
Q 002799 276 RC-EGRSYVCDVNGW 289 (879)
Q Consensus 276 Rs-~g~syV~DVNGw 289 (879)
-. +|.+||+|||--
T Consensus 741 v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 741 LDEEGNFWLSEMNPI 755 (809)
T ss_pred EcCCCCEEEEEeeCC
Confidence 87 467999999943
No 57
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.76 E-value=6.8e-08 Score=106.53 Aligned_cols=197 Identities=21% Similarity=0.245 Sum_probs=144.1
Q ss_pred CcceeeccccCCCcHHHHHHHHHhcCCcccC--CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVN--ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~y~~lr~p~~iN--dl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (879)
.+|++++.+..-+ |++-.+-|+..|.-++= +.++..++.||...|+.++++|||+|.+..+..- ..|...-
T Consensus 66 ~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~ 138 (329)
T PF15632_consen 66 GIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAY 138 (329)
T ss_pred CCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHH
Confidence 4678888776666 77778888888875554 6889999999999999999999999999999643 1222222
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc------------ccCcceEEe
Q 002799 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYE 201 (879)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~------------r~~gsyIyQ 201 (879)
..+... +.|+.+||..|. -|-|.++|-+....-...+.|+...+ ..-..+|++
T Consensus 139 ~~l~~~----~~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvM 203 (329)
T PF15632_consen 139 EELRFP----GQPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVM 203 (329)
T ss_pred HhcCCC----CceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEe
Confidence 223333 468999999998 44454433333322233444433221 145679999
Q ss_pred eccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEe-eCC
Q 002799 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEG 279 (879)
Q Consensus 202 EFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~-VcGfDLLR-s~g 279 (879)
||++-.=--|=|..-++++++|-.|+= . |.+..+.-.++--++|.++|++||++ +.+|.+-. .+|
T Consensus 204 eyL~G~EySVD~l~~~G~viaaV~R~K---~----------G~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g 270 (329)
T PF15632_consen 204 EYLPGPEYSVDCLADEGRVIAAVPRRK---L----------GRRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDG 270 (329)
T ss_pred cCCCCCeEEEEEEecCCEEEEEEEEEe---c----------CceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCC
Confidence 999985555666777789998888865 1 26667788899999999999999986 67899998 688
Q ss_pred CcEEEecC
Q 002799 280 RSYVCDVN 287 (879)
Q Consensus 280 ~syV~DVN 287 (879)
.|+++|+|
T Consensus 271 ~p~LLEIN 278 (329)
T PF15632_consen 271 NPKLLEIN 278 (329)
T ss_pred CEEEEEeC
Confidence 99999999
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.75 E-value=1.2e-07 Score=118.20 Aligned_cols=195 Identities=13% Similarity=0.195 Sum_probs=122.5
Q ss_pred cceeeccccCCCcHHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002799 57 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (879)
+|.+|+-++...++ .+-.-++..+ |+.-++.++...+.||.+..++|++.|||+|++..+... ++.
T Consensus 631 ~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~------------ee~ 697 (1068)
T PRK12815 631 IKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE------------EEA 697 (1068)
T ss_pred CCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH------------HHH
Confidence 67888766554333 2222333445 455688999999999999999999999999999988542 233
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 002799 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (879)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVy 214 (879)
.... ..+++|+|+||..|. ..+++|.+... ...+.++.. ...+..+|+||||...--+|-++
T Consensus 698 ~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~i 760 (1068)
T PRK12815 698 FAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDAI 760 (1068)
T ss_pred HHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEEE
Confidence 2211 235689999999875 23333333211 111222211 12456799999994333455555
Q ss_pred EECCcee-EE-EeeeCCCCCCeeeecCCCCcee---eeeeCCH----HHHHHHHHHHHHhC-CceeEEEEEeeCCCcEEE
Q 002799 215 TVGPEYA-HA-EARKSPVVDGVVMRNPDGKEVR---YPVLLTP----NEKQMAREVCIAFR-QAVCGFDLLRCEGRSYVC 284 (879)
Q Consensus 215 tVG~~~v-hA-e~RKSP~~DG~vrrN~~gke~r---~pv~Lt~----eEk~iA~ka~~afg-q~VcGfDLLRs~g~syV~ 284 (879)
.=|..+. .+ +.+..+ +..|.|... .|..|++ +-+++|.++++++| ..++.||++..++++||+
T Consensus 761 ~dg~~v~i~~i~e~~e~-------~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yvi 833 (1068)
T PRK12815 761 SDGEDVTIPGIIEHIEQ-------AGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYVL 833 (1068)
T ss_pred EcCCceEEeeEEEEeec-------cCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEEE
Confidence 5454432 22 222211 223545432 2456775 45678899999998 447779999999999999
Q ss_pred ecCC
Q 002799 285 DVNG 288 (879)
Q Consensus 285 DVNG 288 (879)
|||-
T Consensus 834 EiNp 837 (1068)
T PRK12815 834 EVNP 837 (1068)
T ss_pred EEeC
Confidence 9994
No 59
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.74 E-value=3.5e-08 Score=101.50 Aligned_cols=159 Identities=21% Similarity=0.302 Sum_probs=100.0
Q ss_pred HHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCC
Q 002799 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 181 (879)
Q Consensus 103 iL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~ 181 (879)
+|+.+|||||+++++.+..- ..+.+...-..++.|+|+||..+ +-.+|.+ -.+. ..|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~---------~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~--v~~~----~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNED---------DSDSIEKILEDLGFPLFVKPASEGSSIGISK--VHNE----EELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSH---------HHHHHHHHHHHHSSSEEEEESSTSTTTTEEE--ESSH----HHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEecccc---------cchhHHHHHhhcCCCEEEEECCCCccEEEEE--cCCH----HHHHHHHHH-
Confidence 58899999999999987510 11112222235678999999986 3233322 2221 123332210
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeec------CCCCceeeeeeCCH
Q 002799 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRN------PDGKEVRYPVLLTP 252 (879)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG---~~~vhAe~RKSP~~DG~vrrN------~~gke~r~pv~Lt~ 252 (879)
..+-+...|+|||| .|+++-|-++| ..+...+....+ ++.+.-+ -.......|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12346678999999 79999999999 667777777665 3333211 13334455666765
Q ss_pred ----HHHHHHHHHHHHhCC-ceeEEEEEee-CCCcEEEecCCcc
Q 002799 253 ----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWS 290 (879)
Q Consensus 253 ----eEk~iA~ka~~afgq-~VcGfDLLRs-~g~syV~DVNGwS 290 (879)
+-+++|.+|.+++|. .+|=||+.-+ +|.+||+|||.-+
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~P 175 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIP 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcc
Confidence 456789999999996 8999999887 6779999999654
No 60
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.72 E-value=4.2e-08 Score=111.92 Aligned_cols=205 Identities=17% Similarity=0.175 Sum_probs=119.3
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 130 (879)
.+|++++.| ||-- ....+.++..+ +|+-++.++..+++||..+.++|.++|||+|.+. .+..
T Consensus 77 ~~daI~pg~--g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~----------- 143 (467)
T PRK12833 77 GADAIHPGY--GFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVAS----------- 143 (467)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCC-----------
Confidence 468888865 3311 12234454555 5788899999999999999999999999998775 3321
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002799 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (879)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~D 210 (879)
.++.... ...+++|+|+||..|. -+..++.-.+.- .....|+... ++-. ..+ .++.+++||||+. |+.
T Consensus 144 -~~e~~~~-~~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 144 -LDAALEV-AARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 1122221 1235789999999986 122222222210 0111222110 0000 011 2567899999976 678
Q ss_pred eEEEEECCc--eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEee--CCCc
Q 002799 211 VKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC--EGRS 281 (879)
Q Consensus 211 IKVytVG~~--~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs--~g~s 281 (879)
|-|-++|+. ++|.-.|..-+ . |++..--+..-+..|++ +-+++|.++++++|.. ++.||++.. +|.+
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~~-~---r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~ 287 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECSL-Q---RRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEF 287 (467)
T ss_pred EEEEEEeCCCcEEEEEEeeccc-c---cCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCE
Confidence 888777763 45554443210 0 11100000010123554 5567899999999975 345899976 3668
Q ss_pred EEEecCCc
Q 002799 282 YVCDVNGW 289 (879)
Q Consensus 282 yV~DVNGw 289 (879)
||+|||.-
T Consensus 288 ~~iEvNpR 295 (467)
T PRK12833 288 YFIEMNTR 295 (467)
T ss_pred EEEEEECC
Confidence 99999953
No 61
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.71 E-value=9.3e-08 Score=108.65 Aligned_cols=194 Identities=16% Similarity=0.174 Sum_probs=113.8
Q ss_pred CcH-HHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccC
Q 002799 68 YPL-EKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWK 145 (879)
Q Consensus 68 fpL-~kai~y~~lr~p~-~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~k 145 (879)
+|+ ....++++..+.. .-.+..+..+.+||..+-++|+++|||+|++..+... .+...++. .++.
T Consensus 72 ~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~---------~e~~~~~~----~~g~ 138 (434)
T PLN02257 72 APLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP---------AAAKKYIK----EQGA 138 (434)
T ss_pred hHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH---------HHHHHHHH----HcCC
Confidence 444 4566777777654 4588889999999999999999999999998877432 01122222 3467
Q ss_pred cEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCCCCceeEEEEE-CC-cee
Q 002799 146 PFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTGGTDVKVYTV-GP-EYA 221 (879)
Q Consensus 146 PfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFI~t~G~DIKVytV-G~-~~v 221 (879)
|+|+||..+. -.+++|-..... ....++.+-.. + .+ ..+..+|+||||. |+.+-|.++ ++ .+.
T Consensus 139 PvVVKp~~~~~GkGV~iv~~~~e---l~~a~~~~~~~-~-------~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~~~ 205 (434)
T PLN02257 139 PIVVKADGLAAGKGVVVAMTLEE---AYEAVDSMLVK-G-------AFGSAGSEVVVEEFLD--GEEASFFALVDGENAI 205 (434)
T ss_pred CEEEEcCCCCCCCCEEEECCHHH---HHHHHHHHHhh-h-------hccCCCCeEEEEECCC--CCEEEEEEEECCCcEE
Confidence 9999999765 122222211110 01111111000 0 11 1245799999997 556666443 33 222
Q ss_pred EE-Eee-eCCCCCCeeeecCCCCceeeeee-CCHHHHH-HHHH-------HHHHhCCceeE---EEEEee--CCCcEEEe
Q 002799 222 HA-EAR-KSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-MARE-------VCIAFRQAVCG---FDLLRC--EGRSYVCD 285 (879)
Q Consensus 222 hA-e~R-KSP~~DG~vrrN~~gke~r~pv~-Lt~eEk~-iA~k-------a~~afgq~VcG---fDLLRs--~g~syV~D 285 (879)
.. +.+ .....||+..-|+.|-+.-.|.. ++++..+ ++.. +.++.|..+.| +|++-+ +|+|||+|
T Consensus 206 pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE 285 (434)
T PLN02257 206 PLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLE 285 (434)
T ss_pred EEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEE
Confidence 21 111 23356888888886555444553 7774444 3333 33466776555 677665 46699999
Q ss_pred cC
Q 002799 286 VN 287 (879)
Q Consensus 286 VN 287 (879)
+|
T Consensus 286 ~N 287 (434)
T PLN02257 286 YN 287 (434)
T ss_pred EE
Confidence 99
No 62
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.67 E-value=5.4e-08 Score=121.70 Aligned_cols=204 Identities=18% Similarity=0.192 Sum_probs=119.0
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEE-EeccCCCcccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL-VNREVPYQELDYFIE 131 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~-~~r~~p~~~~~~~~e 131 (879)
.+|++++.| ||-- ....+.++..+ +|+-++.+...+++||..+.++|.++|||+|.... .-.+
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s----------- 144 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDD----------- 144 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCC-----------
Confidence 378898865 3321 12233444555 46778999999999999999999999999976554 2111
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~D 210 (879)
.++.... ...+++|+|+||..|. -.++.+...... ....|+... ++ . .....++.+++||||+. ++.
T Consensus 145 ~eea~~~-a~~iGyPvVVKP~~GgGGrGv~vV~~~eE---L~~a~~~a~---~e-a---~~~fg~~~vlVEefI~g-~~~ 212 (1146)
T PRK12999 145 IEEALEF-AEEIGYPIMLKASAGGGGRGMRIVRSEEE---LEEAFERAK---RE-A---KAAFGNDEVYLEKYVEN-PRH 212 (1146)
T ss_pred HHHHHHH-HHHhCCCEEEEECCCCCCCCeEEeCCHHH---HHHHHHHHH---HH-H---HhhcCCCcEEEecCCCC-CeE
Confidence 1222221 1245789999999986 122222111110 111222110 00 0 00012567999999973 566
Q ss_pred eEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCCcee-EEEEEeeC-CCc
Q 002799 211 VKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQAVC-GFDLLRCE-GRS 281 (879)
Q Consensus 211 IKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afgq~Vc-GfDLLRs~-g~s 281 (879)
|-|-++| ++++|--.|-..+ .||+..--|..-...|+++ -+++|.++++++|..-+ .||++.+. |++
T Consensus 213 ieVqvl~D~~G~vv~l~erdcsv----qrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~ 288 (1146)
T PRK12999 213 IEVQILGDKHGNVVHLYERDCSV----QRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNF 288 (1146)
T ss_pred EEEEEEEECCCCEEEEEccccce----eecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCE
Confidence 7776665 3556655553321 2222111122111256654 35589999999998544 49999874 579
Q ss_pred EEEecCC
Q 002799 282 YVCDVNG 288 (879)
Q Consensus 282 yV~DVNG 288 (879)
|++|||-
T Consensus 289 yfIEINp 295 (1146)
T PRK12999 289 YFIEVNP 295 (1146)
T ss_pred EEEEEEC
Confidence 9999994
No 63
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.65 E-value=1e-07 Score=109.78 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=111.0
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEE
Q 002799 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVE 149 (879)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVe 149 (879)
+..+.++..| ||+.-+..+..++.||..+.++++++|||+|++.++..+. .++... +....++.|+|+
T Consensus 117 ~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVV 186 (493)
T PRK06524 117 ETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVV 186 (493)
T ss_pred HHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEE
Confidence 4455555666 5669999999999999999999999999999998863221 111111 111236789999
Q ss_pred eecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE--EEEECC-ceeEEEe
Q 002799 150 KPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK--VYTVGP-EYAHAEA 225 (879)
Q Consensus 150 Kpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIK--VytVG~-~~vhAe~ 225 (879)
||..|. -+++++...... ...++.+ .-.+..+++|+||. |.-+= |++-+. .+++.-.
T Consensus 187 KP~~GGSS~GV~~Vkn~eE---Le~a~~~--------------~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~ 247 (493)
T PRK06524 187 QTPYGDSGSTTFFVRGQRD---WDKYAGG--------------IVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAM 247 (493)
T ss_pred EECCCCCCcCEEEeCCHHH---HHHHHHH--------------hcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccc
Confidence 999874 233333322111 1111111 11124478899995 54432 243332 2222111
Q ss_pred eeCCCCCCeeeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhC----CceeEEEEEee--CCCcEEEecC
Q 002799 226 RKSPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 287 (879)
Q Consensus 226 RKSP~~DG~vrrN~~gke---~r~pv~Lt~----eEk~iA~ka~~afg----q~VcGfDLLRs--~g~syV~DVN 287 (879)
+. ++-..++. .-.+|. ...|..+++ +-+++|.+++++++ ..+++||++.. +|+.|++|||
T Consensus 248 ~e-~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 248 TS-LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred cc-cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 11 11000121 012232 234777888 77789999999984 68899999998 4779999999
No 64
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.64 E-value=2.7e-08 Score=102.15 Aligned_cols=168 Identities=25% Similarity=0.327 Sum_probs=106.8
Q ss_pred CCchhhhHhhhHHHHHHHHHh-------CCCCC-CCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 002799 86 NELEPQHLLHDRRKVYEQLEK-------YGIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (879)
Q Consensus 86 Ndl~~q~il~DR~~~~qiL~~-------~gIP~-P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (879)
|+|.+.+.+.||--++..|.+ ...|+ +.|.+- ...+.+.-- ..|+|+|--.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~yp-------------nh~em~s~~----~fPvVvKvG~~h-- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYP-------------NHREMLSAP----RFPVVVKVGHAH-- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEES-------------SGGGGCS-S----SSSEEEEESS-S--
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecC-------------ChhhhccCC----CCCEEEEEcccc--
Confidence 888999999997665555543 23442 222222 233444321 379999987765
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcce-EEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeee
Q 002799 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (879)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsy-IyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vr 236 (879)
.|-|-. |+.|+...-|-.. .+....+| -.|-||.. --||||--||++| -|+.|+|. .|.|.
T Consensus 62 ---------~G~GKv----kv~n~~~~qDi~s-ll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 ---------AGMGKV----KVDNQQDFQDIAS-LLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp ---------TTTTEE----EE-SHHHHHHHHH-HHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred ---------CceeEE----EEccHHHHHHHHH-HHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 555543 4555543222111 22323344 56778855 6899999999997 89999995 89999
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEee-CCCcEEEecCCccc
Q 002799 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRC-EGRSYVCDVNGWSF 291 (879)
Q Consensus 237 rN~~gke~r~pv~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs-~g~syV~DVNGwSF 291 (879)
+|+ |-..-+.|.+|+..|...-.+++.| |++|||+|.|-+ .|+-|++||||-|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 997 5567779999999999999999999 999999999999 56788999998654
No 65
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.60 E-value=5.1e-07 Score=112.59 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=120.2
Q ss_pred CcceeeccccCCCcHHHHHH-----HHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAES-----YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~-----y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (879)
.+|++|+.++....+.-++. .++..+ ++.-.+.++..+++||....+.|+++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 152 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSM--------- 152 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCH---------
Confidence 46899988764444432331 355666 455689999999999999999999999999999998642
Q ss_pred ccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 002799 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (879)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G 208 (879)
++.... -..+++|+|+||..|. ..++++...... ...+++.. ......+.+|+||||+- -
T Consensus 153 ---~e~~~~-~~~ig~PvVVKP~~g~gg~Gv~iv~~~ee---L~~a~~~~-----------~~~s~~~~vlvEe~I~G-~ 213 (1066)
T PRK05294 153 ---EEALEV-AEEIGYPVIIRPSFTLGGTGGGIAYNEEE---LEEIVERG-----------LDLSPVTEVLIEESLLG-W 213 (1066)
T ss_pred ---HHHHHH-HHHcCCCeEEEcCCCCCCCCeEEECCHHH---HHHHHHHH-----------HhhCCCCeEEEEEcccC-c
Confidence 122211 1235689999999875 122222221110 11111100 00112457899999963 1
Q ss_pred ceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhCCc--eeEEEE
Q 002799 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGFDL 274 (879)
Q Consensus 209 ~DIKVytVG~---~~v--hAe~RKSP~~DG~vrrN~~gke~r--~pv-~Lt~eE----k~iA~ka~~afgq~--VcGfDL 274 (879)
..+=+-++.+ +.+ ..+.+..|. | .|.|++. .|. .|++++ +++|.++++++|.. +|.||+
T Consensus 214 ~Eisv~v~rd~~g~~~~~~~~e~~dp~--g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef 286 (1066)
T PRK05294 214 KEYEYEVMRDKNDNCIIVCSIENIDPM--G-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQF 286 (1066)
T ss_pred eEEEEEEEEcCCCCEEEEeeeeecccc--c-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEE
Confidence 3344433322 111 123333331 1 3444442 233 577644 58999999999987 999999
Q ss_pred Eee-C-CCcEEEecC
Q 002799 275 LRC-E-GRSYVCDVN 287 (879)
Q Consensus 275 LRs-~-g~syV~DVN 287 (879)
.-+ . |+.||+|||
T Consensus 287 ~~~~~~g~~~viEiN 301 (1066)
T PRK05294 287 ALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEECCCCcEEEEEee
Confidence 987 3 568999999
No 66
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.59 E-value=2.6e-07 Score=98.30 Aligned_cols=152 Identities=22% Similarity=0.233 Sum_probs=115.8
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 002799 71 EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (879)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (879)
..+-+|++.-|+ +..+.+.+-|||++|..|..+ +++|.|...- +. .+-+|+|
T Consensus 93 ri~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~-~~----------------------~~k~ViK 144 (307)
T COG1821 93 RIYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWA-EE----------------------PKKYVIK 144 (307)
T ss_pred HHHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCccccc-cC----------------------CceEEec
Confidence 356677776665 678999999999999999999 9999998532 11 2469999
Q ss_pred eccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC--------CCceeEEEEECCceeE
Q 002799 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT--------GGTDVKVYTVGPEYAH 222 (879)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t--------~G~DIKVytVG~~~vh 222 (879)
|.+|. +|.|. +|- .-.| ++ .|.||||+- .|+++.+.+|..+++.
T Consensus 145 p~dgC-----------gge~i--~~~-------~~~p-------d~-~i~qEfIeG~~lSVSL~~GEkv~pLsvNrQfi~ 196 (307)
T COG1821 145 PADGC-----------GGEGI--LFG-------RDFP-------DI-EIAQEFIEGEHLSVSLSVGEKVLPLSVNRQFII 196 (307)
T ss_pred ccccC-----------Cccee--ecc-------CCCc-------ch-hhHHHhcCCcceEEEEecCCccccceechhhhh
Confidence 99997 55444 221 1112 22 789999974 4777777777665443
Q ss_pred EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC--CceeEEEEEeeCCCcEEEecCC
Q 002799 223 AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR--QAVCGFDLLRCEGRSYVCDVNG 288 (879)
Q Consensus 223 Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afg--q~VcGfDLLRs~g~syV~DVNG 288 (879)
- +..+.--.||..+++-+|..+-.+.|+++.+-++ -...||||.-+ +.|||+|||-
T Consensus 197 ~---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINp 254 (307)
T COG1821 197 F---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINP 254 (307)
T ss_pred h---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CCcEEEEecC
Confidence 2 3456667789999999999999999999999988 45789999999 9999999993
No 67
>PLN02735 carbamoyl-phosphate synthase
Probab=98.59 E-value=4.1e-07 Score=113.70 Aligned_cols=198 Identities=14% Similarity=0.214 Sum_probs=123.9
Q ss_pred cceeeccccCCCcHHHHH---HHHHhc----------CCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCC
Q 002799 57 CDCLIAFYSSGYPLEKAE---SYATLR----------KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPY 123 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~kai---~y~~lr----------~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~ 123 (879)
+|++|+-|+...|+.-|. +++... =+++..+.++..++.||.+..++|+++|||+|++..+...
T Consensus 650 ~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~--- 726 (1102)
T PLN02735 650 PDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSE--- 726 (1102)
T ss_pred CCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCH---
Confidence 689998888776653222 222222 2467899999999999999999999999999999877532
Q ss_pred ccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEee
Q 002799 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEE 202 (879)
Q Consensus 124 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQE 202 (879)
++...+ -..+++|+|+||..|. ..++.|-+.... ....++... ....++.+|+|+
T Consensus 727 ---------eea~~~-a~~iGyPvvVKP~~g~gG~G~~iV~~~ee---L~~al~~a~-----------~~~~~~~vlVEe 782 (1102)
T PLN02735 727 ---------ADALAI-AKRIGYPVVVRPSYVLGGRAMEIVYSDDK---LKTYLETAV-----------EVDPERPVLVDK 782 (1102)
T ss_pred ---------HHHHHH-HHhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHHH-----------HhcCCCCEEEEE
Confidence 222221 1246799999999974 122222222111 111111110 112355799999
Q ss_pred ccCCCCceeEEEEECC---ceeE--EEeeeCCCCCCeeeecCCCCceeeee---eCCHHH----HHHHHHHHHHhCC-ce
Q 002799 203 FMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-AV 269 (879)
Q Consensus 203 FI~t~G~DIKVytVG~---~~vh--Ae~RKSP~~DG~vrrN~~gke~r~pv---~Lt~eE----k~iA~ka~~afgq-~V 269 (879)
||. +|+-+=|-++++ +++. .+.+.- +...|.|+....+ .|+++. +++|.++++++|. .+
T Consensus 783 fI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~ 854 (1102)
T PLN02735 783 YLS-DATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGL 854 (1102)
T ss_pred ecC-CcEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 995 377777777763 2221 122211 1223555544333 577544 5679999999984 57
Q ss_pred eEEEEEee-CCCcEEEecCCc
Q 002799 270 CGFDLLRC-EGRSYVCDVNGW 289 (879)
Q Consensus 270 cGfDLLRs-~g~syV~DVNGw 289 (879)
+.+|++-+ +|++||+|||--
T Consensus 855 ~~vqf~v~~dg~~yviEiNpR 875 (1102)
T PLN02735 855 MNCQYAITPSGEVYIIEANPR 875 (1102)
T ss_pred eeEEEEEcCCCcEEEEEEeCC
Confidence 78999985 678999999943
No 68
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=2.8e-07 Score=101.28 Aligned_cols=192 Identities=17% Similarity=0.201 Sum_probs=136.6
Q ss_pred HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEE
Q 002799 71 EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVE 149 (879)
Q Consensus 71 ~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVe 149 (879)
.....|++..+ ||+......=+..-||..+-++++..|||++..+...++.. .+..++-.-..++.|+++
T Consensus 77 g~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~---------~~~~~e~~~~~l~~p~~V 147 (317)
T COG1181 77 GTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEY---------SSVIVEEVEEGLGFPLFV 147 (317)
T ss_pred chHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccc---------hhHHHHHhhcccCCCEEE
Confidence 36778888888 99999999999999999999999999999999999987521 111122222345799999
Q ss_pred eeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCC
Q 002799 150 KPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP 229 (879)
Q Consensus 150 Kpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP 229 (879)
||...- --+.+.-.++.|-|- +..+. ..+.+...+.|+|+. |+.|.|=+.|... +++.-++
T Consensus 148 kp~~~g-SSvg~~~v~~~~d~~-----------~~~e~---a~~~d~~vl~e~~~~--~rei~v~vl~~~~--~~~~l~~ 208 (317)
T COG1181 148 KPAREG-SSVGRSPVNVEGDLQ-----------SALEL---AFKYDRDVLREQGIT--GREIEVGVLGNDY--EEQALPL 208 (317)
T ss_pred EcCCcc-ceeeEEEeeeccchH-----------HHHHH---HHHhCCceeeccCCC--cceEEEEecCCcc--cceecCc
Confidence 998842 134444444444333 11110 345788889999999 9999999999865 2222221
Q ss_pred --C-CCC-ee----eecCCCCceeee--eeCCH----HHHHHHHHHHHHhC-CceeEEEEEeeC--CCcEEEecCCcc
Q 002799 230 --V-VDG-VV----MRNPDGKEVRYP--VLLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVNGWS 290 (879)
Q Consensus 230 --~-~DG-~v----rrN~~gke~r~p--v~Lt~----eEk~iA~ka~~afg-q~VcGfDLLRs~--g~syV~DVNGwS 290 (879)
+ .+| .| -.|+++|+..+. -.||+ +-+++|.+|++|+| ..+||+|++-.. |..|++|||.-+
T Consensus 209 ~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~P 286 (317)
T COG1181 209 GEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNP 286 (317)
T ss_pred eEEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCC
Confidence 0 033 33 267884443332 23665 56889999999999 999999999997 789999999543
No 69
>PLN02735 carbamoyl-phosphate synthase
Probab=98.56 E-value=1.1e-06 Score=110.08 Aligned_cols=197 Identities=12% Similarity=0.135 Sum_probs=125.5
Q ss_pred CcceeeccccCCCcHHHHH-----HHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai-----~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (879)
.+|++|+-++...++.-++ ..++..+ |++-++..+..++.||...-++|.++|||+|++..+...
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 168 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTL--------- 168 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCH---------
Confidence 6899998776545553233 2345666 578899999999999999999999999999999888532
Q ss_pred ccccceeeecCeecc-CcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC
Q 002799 130 IEEEDFVEVHGNRFW-KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 207 (879)
Q Consensus 130 ~e~~d~i~v~g~~~~-kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~ 207 (879)
++.... -..++ +|+|+||..|. ..+++|-+.... ....++..- ....++.+|+||||.-
T Consensus 169 ---eea~~~-~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eE---L~~a~~~a~-----------~~s~~~~VLVEe~I~G- 229 (1102)
T PLN02735 169 ---DECFEI-AEDIGEFPLIIRPAFTLGGTGGGIAYNKEE---FETICKAGL-----------AASITSQVLVEKSLLG- 229 (1102)
T ss_pred ---HHHHHH-HHHhCCCCEEEEeCCCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEecCC-
Confidence 111111 11244 89999999853 233333322211 111121110 1124667899999963
Q ss_pred CceeEEEEECC---ce--eEEEeeeCCCCCCeeeecCCCCceee--ee-eCCHH----HHHHHHHHHHHhCC--ceeEEE
Q 002799 208 GTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVRY--PV-LLTPN----EKQMAREVCIAFRQ--AVCGFD 273 (879)
Q Consensus 208 G~DIKVytVG~---~~--vhAe~RKSP~~DG~vrrN~~gke~r~--pv-~Lt~e----Ek~iA~ka~~afgq--~VcGfD 273 (879)
.+-+=|=++++ +. +..+.+..| .| .|.|.... |. .|+++ -+++|.+|++++|. .+|.||
T Consensus 230 ~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVq 302 (1102)
T PLN02735 230 WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQ 302 (1102)
T ss_pred CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 25566666653 22 233444444 23 24344432 44 47764 44569999999997 699999
Q ss_pred EEee--CCCcEEEecC
Q 002799 274 LLRC--EGRSYVCDVN 287 (879)
Q Consensus 274 LLRs--~g~syV~DVN 287 (879)
+.-. +|.+||+|||
T Consensus 303 f~l~~~~g~~~ViEVN 318 (1102)
T PLN02735 303 FAVNPVDGEVMIIEMN 318 (1102)
T ss_pred EEEECCCCcEEEEEec
Confidence 9886 4679999999
No 70
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.45 E-value=8.2e-07 Score=110.67 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=120.2
Q ss_pred CcceeeccccCCCcHHHH-----HHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002799 56 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~ka-----i~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (879)
.+|++++.++-..++.-+ ...++..+. +.-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 151 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSV--------- 151 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCH---------
Confidence 479999987644444212 234566774 55689999999999999999999999999999888542
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-cc--ccCcceEEeeccCC
Q 002799 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPT 206 (879)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~--r~~gsyIyQEFI~t 206 (879)
++.... ...+++|+|+||..|. .|.|+. .+.|... +..-+. .. ...+.+|+||||+-
T Consensus 152 ---~e~~~~-~~~igyPvIVKP~~g~-----------gg~Gv~----iv~~~ee-L~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 152 ---EEALAA-AKEIGYPVIVRPAFTL-----------GGTGGG----IAYNREE-LKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred ---HHHHHH-HHHhCCCeEEECCCCC-----------CCCCeE----EECCHHH-HHHHHHHHHhcCCCCcEEEEEcccC
Confidence 122221 1245689999999875 233332 1222221 110000 11 12357899999963
Q ss_pred CCceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCce--eeee-eCCHHH----HHHHHHHHHHhCCc-eeEEE
Q 002799 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNE----KQMAREVCIAFRQA-VCGFD 273 (879)
Q Consensus 207 ~G~DIKVytVG~---~~v--hAe~RKSP~~DG~vrrN~~gke~--r~pv-~Lt~eE----k~iA~ka~~afgq~-VcGfD 273 (879)
...+=|-++++ +.+ ..+.+.-| .| .|-|++ -.|. .|++++ +++|.++++++|.. +|.||
T Consensus 212 -~~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Ve 283 (1050)
T TIGR01369 212 -WKEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQ 283 (1050)
T ss_pred -ceEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 13444444322 222 22344334 22 233333 2243 377654 46889999999974 78999
Q ss_pred EEee--CCCcEEEecCC
Q 002799 274 LLRC--EGRSYVCDVNG 288 (879)
Q Consensus 274 LLRs--~g~syV~DVNG 288 (879)
+... +|+.||+|||.
T Consensus 284 f~l~~~~g~~~viEiNP 300 (1050)
T TIGR01369 284 FALNPDSGRYYVIEVNP 300 (1050)
T ss_pred EEEECCCCcEEEEEeec
Confidence 9887 46799999993
No 71
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.42 E-value=4.9e-06 Score=94.54 Aligned_cols=206 Identities=14% Similarity=0.136 Sum_probs=113.4
Q ss_pred cceeeccccCCCcHH-HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002799 57 CDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (879)
Q Consensus 57 ~D~lIsf~s~GfpL~-kai~y~~lr~p~~i-Ndl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (879)
+|++|+.... |+. .+.+.++..+..++ -+..+-.+.+||..+-++|+++|||+|++..+... .+..+
T Consensus 69 iD~Vv~g~E~--~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~ea~~ 137 (426)
T PRK13789 69 FDLIVVGPED--PLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---------SSSLS 137 (426)
T ss_pred CCEEEECCch--HHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---------HHHHH
Confidence 4555543322 332 23344555664433 23345568889999999999999999998777432 01122
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002799 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (879)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKV 213 (879)
++. .++.|+|+||..+. -.+++|...... ....++.+-.. +.|. ..+..+|+||||. |+-+=|
T Consensus 138 ~~~----~~~~PvVVKp~~~~~gkGV~vv~~~ee---l~~a~~~~~~~-~~~g------~~~~~vlIEEfl~--G~E~Sv 201 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLAAGKGVTVATEKKM---AKRALKEIFKD-KKFG------QSGNQVVIEEFME--GQEASI 201 (426)
T ss_pred HHH----hcCCCEEEEeCCCCCCCcEEEECCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEECcC--CeEEEE
Confidence 222 24689999999764 234443333221 11122211000 0010 1234799999997 455555
Q ss_pred EEECCc-eeEEE--eee-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---C---CceeEEEEEee
Q 002799 214 YTVGPE-YAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---R---QAVCGFDLLRC 277 (879)
Q Consensus 214 ytVG~~-~vhAe--~RK-SP~~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~~af---g---q~VcGfDLLRs 277 (879)
.++.+. .+..+ .+. -...||+-.-|+.|=+.-.|.. ++++.. +|+.++.+++ | ..+..+|++-+
T Consensus 202 ~~~~dg~~~~~lp~~~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it 281 (426)
T PRK13789 202 FAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMIS 281 (426)
T ss_pred EEEECCCEEEEccceEecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEc
Confidence 554321 11211 111 1123666555666656556665 465322 3455556555 4 45677898888
Q ss_pred CCC-cEEEecCCc
Q 002799 278 EGR-SYVCDVNGW 289 (879)
Q Consensus 278 ~g~-syV~DVNGw 289 (879)
.++ +||+|+|--
T Consensus 282 ~~g~~~vlE~n~R 294 (426)
T PRK13789 282 PEGEPKVVEFNCR 294 (426)
T ss_pred CCCCEEEEEEecC
Confidence 655 999999954
No 72
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.37 E-value=3.5e-06 Score=106.37 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=118.4
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCC-EEEEeccCCCcccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIE 131 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~-t~~~~r~~p~~~~~~~~e 131 (879)
.+|++|+-| ||-- ....+.++..+ +|+-++.++..+++||....++|+++|||+|. +.++...
T Consensus 73 ~idaIiPG~--gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~----------- 139 (1201)
T TIGR02712 73 GAQAIHPGY--GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSL----------- 139 (1201)
T ss_pred CCCEEEeCC--cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCH-----------
Confidence 357777755 2321 23456667777 46778999999999999999999999999855 5444321
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DI 211 (879)
++.... -..+++|+|+||..|.. ++.++...+.- -....|+.+.+.+..+ . .+..+|+||||.. |+-+
T Consensus 140 -dea~~~-a~~igyPvVVKP~~ggG-G~GV~iv~~~e-EL~~a~~~~~~~~~~~------f-~~~~vlVEefI~g-~~ev 207 (1201)
T TIGR02712 140 -DEALEA-AKEIGYPVMLKSTAGGG-GIGMQKCDSAA-ELAEAFETVKRLGESF------F-GDAGVFLERFVEN-ARHV 207 (1201)
T ss_pred -HHHHHH-HHhcCCeEEEEECCCCC-CCCEEEECCHH-HHHHHHHHHHHHHHHh------c-CCCcEEEEecCCC-CEEE
Confidence 122221 12356899999999861 22222222210 1222333332111000 0 1345899999974 5677
Q ss_pred EEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC--CCc
Q 002799 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GRS 281 (879)
Q Consensus 212 KVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~--g~s 281 (879)
-|.++|+ .+++--.|..- .-++|..--+..-+..|++ +-.++|.++++++|.. ++.||++... +++
T Consensus 208 eV~v~~Dg~g~vv~lg~rd~s----~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~ 283 (1201)
T TIGR02712 208 EVQIFGDGKGKVVALGERDCS----LQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEF 283 (1201)
T ss_pred EEEEEECCCCeEEEeeEEEee----eEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCE
Confidence 7777753 34444333210 0112211111110112443 4566888999999864 7779999864 779
Q ss_pred EEEecCCc
Q 002799 282 YVCDVNGW 289 (879)
Q Consensus 282 yV~DVNGw 289 (879)
||+|||.=
T Consensus 284 y~lEVNpR 291 (1201)
T TIGR02712 284 YFLEVNTR 291 (1201)
T ss_pred EEEEEECC
Confidence 99999963
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.32 E-value=9.1e-06 Score=101.70 Aligned_cols=207 Identities=16% Similarity=0.169 Sum_probs=121.9
Q ss_pred CcceeeccccCCCcHHHHHH-----HHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAES-----YATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~-----y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (879)
.+|++|+.++....+.-+++ .++..+. +.-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 152 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSV--------- 152 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCH---------
Confidence 57899987763333432331 3456664 44578999999999999999999999999999988642
Q ss_pred ccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 002799 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (879)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G 208 (879)
++.... -..+++|+|+||..|. ..++++...... ...+++..- .....+.+|+||||+- .
T Consensus 153 ---ee~~~~-~~~igyPvVVKP~~g~gG~Gv~iv~~~eE---L~~a~~~~~-----------~~s~~~~vLVEe~I~G-~ 213 (1068)
T PRK12815 153 ---EEALAF-AEKIGFPIIVRPAYTLGGTGGGIAENLEE---LEQLFKQGL-----------QASPIHQCLLEESIAG-W 213 (1068)
T ss_pred ---HHHHHH-HHHcCCCEEEEECcCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEccCC-C
Confidence 122111 1235689999999874 122222221110 111111110 0112357999999963 1
Q ss_pred ceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhCC-ceeEEEEE
Q 002799 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (879)
Q Consensus 209 ~DIKVytVG~---~~v--hAe~RKSP~~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~~afgq-~VcGfDLL 275 (879)
..+=|-++.+ +.+ .++.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 3444544432 222 22233233 22 2223221 233 47765 35788999999997 57889988
Q ss_pred ee-C-CCcEEEecCCccccccchhhH
Q 002799 276 RC-E-GRSYVCDVNGWSFVKNSYKYY 299 (879)
Q Consensus 276 Rs-~-g~syV~DVNGwSFVK~n~kYY 299 (879)
-. . |++||+||| +=+-++..+-
T Consensus 287 l~~~~g~~~ViEIN--PR~~~s~~l~ 310 (1068)
T PRK12815 287 LDPKSKQYYLIEVN--PRVSRSSALA 310 (1068)
T ss_pred EECCCCcEEEEEEe--cCcccchhhh
Confidence 76 3 569999999 3333554443
No 74
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.28 E-value=2.7e-06 Score=90.88 Aligned_cols=193 Identities=19% Similarity=0.249 Sum_probs=120.7
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCC-CC--CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 002799 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (879)
Q Consensus 79 lr~p~~iNdl~~q~il~DR~~~~qiL~~~g-IP--~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (879)
.++....|. -+.|||.+|+.|.+.. +. +|.|...... .....++.-. +-+.+||..|+
T Consensus 6 ~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~---------~~l~~~L~~y-----~~vylKP~~Gs 66 (262)
T PF14398_consen 6 QKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF---------EDLREMLNKY-----KSVYLKPDNGS 66 (262)
T ss_pred cCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH---------HHHHHHHHHC-----CEEEEEeCCCC
Confidence 345556665 3469999999999863 44 7888777541 0122333322 36899999998
Q ss_pred CcceeEEeccCCCChHHHHHhhcCC-Ccccccc------cccccccCcceEEeeccCC---CC--ceeEEEEEC--C---
Q 002799 156 DHSIMIYYPSSAGGGMKELFRKVGN-RSSEFHP------DVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P--- 218 (879)
Q Consensus 156 dHni~IYyp~~~GgG~~rLfrkign-~sS~~~p------~~~~~r~~gsyIyQEFI~t---~G--~DIKVytVG--~--- 218 (879)
.+..|+.=...++|..--++.-+. ....|.. -+...-....||+|+.|+- +| -|+||++-= .
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 555555544444333211111111 0001110 0111235679999999976 55 799999982 2
Q ss_pred ceeEEEeeeCCCCCCeeeecCCCCceeeeee-----------CCHHHHHHHHHH----HHHhCC--ceeEEEEEee-CCC
Q 002799 219 EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-----------LTPNEKQMAREV----CIAFRQ--AVCGFDLLRC-EGR 280 (879)
Q Consensus 219 ~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-----------Lt~eEk~iA~ka----~~afgq--~VcGfDLLRs-~g~ 280 (879)
.+....+|.++ .|.+-+|.++||...++. +..+-+++|..+ .+.||. .-.|+||--. +|+
T Consensus 146 ~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~ 223 (262)
T PF14398_consen 146 QVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGK 223 (262)
T ss_pred EEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCC
Confidence 57789999998 899999999888765541 222333444444 455664 6789999888 677
Q ss_pred cEEEecCCccccc
Q 002799 281 SYVCDVNGWSFVK 293 (879)
Q Consensus 281 syV~DVNGwSFVK 293 (879)
..++|||.-+-..
T Consensus 224 iWliEvN~kP~~~ 236 (262)
T PF14398_consen 224 IWLIEVNSKPGKF 236 (262)
T ss_pred EEEEEEeCCCCcc
Confidence 8899999875443
No 75
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.25 E-value=5.3e-06 Score=95.91 Aligned_cols=200 Identities=17% Similarity=0.133 Sum_probs=112.8
Q ss_pred cceeeccccCCCcH-HHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCC-CEEEEeccCCCcccccccccc
Q 002799 57 CDCLIAFYSSGYPL-EKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVP-RYALVNREVPYQELDYFIEEE 133 (879)
Q Consensus 57 ~D~lIsf~s~GfpL-~kai~y~~lr~p~-~iNdl~~q~il~DR~~~~qiL~~~gIP~P-~t~~~~r~~p~~~~~~~~e~~ 133 (879)
+|++|+.... |+ ..+-..++..+.. .-++..+-.+.+||..+-++|+++|||+| .+..+. + + .+..
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~-~-~-------~ea~ 138 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFY-D-V-------EEAA 138 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeC-C-H-------HHHH
Confidence 5777764443 44 2333445566644 45899999999999999999999999997 454443 2 1 0112
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcc----cc-cc------cc----ccc-ccCcc
Q 002799 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSS----EF-HP------DV----RRV-RREGS 197 (879)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS----~~-~p------~~----~~~-r~~gs 197 (879)
++++ .+ .|+|+||..+. .|-|+. + +.+... .+ ++ +. ..+ ..+..
T Consensus 139 ~~~~----~~-~PvVVKP~~~a-----------ggkGV~-i---v~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~ 198 (486)
T PRK05784 139 KFIE----YG-GSVAIKPARQA-----------GGKGVK-V---IADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPK 198 (486)
T ss_pred HHHh----hc-CCEEEeeCCCC-----------CCCCEE-E---ECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCe
Confidence 2222 12 49999999886 444553 2 222110 00 00 00 011 13567
Q ss_pred eEEeeccCCCCceeEEEEECCcee-EEEeeeCC-CCCCeeeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhC
Q 002799 198 YIYEEFMPTGGTDVKVYTVGPEYA-HAEARKSP-VVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFR 266 (879)
Q Consensus 198 yIyQEFI~t~G~DIKVytVG~~~v-hAe~RKSP-~~DG~vrrN~~gke~r~p----v~-Lt~eE----k~iA~ka~~afg 266 (879)
+|.||||.-.=-.|=+++-|..+. -...+.-| ..||+.--|+.|=+.-.| +. +++++ .+++.++..+++
T Consensus 199 VlIEEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~ 278 (486)
T PRK05784 199 ILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIY 278 (486)
T ss_pred EEEEEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999983212333444344332 11122111 125666566655444333 32 34432 345777777776
Q ss_pred Cc-------eeEEEEEee-CCCcEEEecC
Q 002799 267 QA-------VCGFDLLRC-EGRSYVCDVN 287 (879)
Q Consensus 267 q~-------VcGfDLLRs-~g~syV~DVN 287 (879)
.. ++-++++-+ .++|+|+|+|
T Consensus 279 ~~~g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 279 KETGERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred HhcCCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 43 445688888 8999999999
No 76
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=98.14 E-value=3.5e-07 Score=107.67 Aligned_cols=36 Identities=50% Similarity=0.800 Sum_probs=33.9
Q ss_pred CccccccccCCCCCCCCCCCceeeeeeeeechhHHHHHH
Q 002799 836 DDKETQYRLDPKYANVKTPERHVRTRLYFTSVCIIYIAV 874 (879)
Q Consensus 836 ~~~e~~~rL~p~ya~v~SP~RhVRTRLYFTSESHiHSLl 874 (879)
..+|+.+||||.| .||.||||||||||||||+|||+
T Consensus 780 ~~~et~~~~~p~~---~sp~~~~r~~lY~~sk~~v~sl~ 815 (1018)
T KOG1057|consen 780 ESAETKNRLNPVY---LSPRRHVRTRLYFTSKSHVHSLL 815 (1018)
T ss_pred cchhhhcccCccc---cChhHHHHHHHhhhhHhhhhhhh
Confidence 4568999999999 89999999999999999999998
No 77
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.83 E-value=4.4e-05 Score=87.75 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=130.2
Q ss_pred CcceeeccccCCCcH--HHHHHHHHhcCCcccCC--chhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccc
Q 002799 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFLVNE--LEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL--~kai~y~~lr~p~~iNd--l~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e 131 (879)
.+|++++.|+ |-- .+..+-|+..+ ++..- .+....++||...-++++++|||+|.....- - ..
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~----~------~~ 140 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGA----V------AD 140 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCC----c------CC
Confidence 5788888776 333 56667777777 44443 4556788999999999999999999987221 0 01
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccc------cccCcceEEeeccC
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR------VRREGSYIYEEFMP 205 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~------~r~~gsyIyQEFI~ 205 (879)
.++.+.. -+.+++|+|+||..|- -|.|++ +.+. .+.....-... .-.++.++.|+|+.
T Consensus 141 ~ee~~~~-a~~iGyPVivKa~~Gg-----------Gg~G~r-~v~~---~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~ 204 (449)
T COG0439 141 NEEALAI-AEEIGYPVIVKAAAGG-----------GGRGMR-VVRN---EEELEAAFEAARGEAEAAFGNPRVYLEKFIE 204 (449)
T ss_pred HHHHHHH-HHHcCCCEEEEECCCC-----------CcccEE-EECC---HHHHHHHHHHHHHHHHHhcCCCcEEeeeecc
Confidence 1233332 2345699999999986 444553 5443 33333211000 11467799999998
Q ss_pred CCCceeEEEEECCc---eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhCCceeE-EEEEee
Q 002799 206 TGGTDVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC 277 (879)
Q Consensus 206 t~G~DIKVytVG~~---~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~----iA~ka~~afgq~VcG-fDLLRs 277 (879)
. -+=|=|-+.|+. ++|.-.|-.. .=||+-.=.|..-...++++.++ .|.+++++.|-.-|| |..|-.
T Consensus 205 ~-~rhievqv~gD~~g~~i~l~eRdcs----iqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~ 279 (449)
T COG0439 205 G-PRHIEVQVLGDGHGNVIHLGERDCS----IQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYD 279 (449)
T ss_pred C-CceEEEEEEEcCcccEEEEEeccCC----CcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEe
Confidence 7 445666666664 4788888732 24666666666655556665554 467788887777776 888888
Q ss_pred -CCCcEEEecC
Q 002799 278 -EGRSYVCDVN 287 (879)
Q Consensus 278 -~g~syV~DVN 287 (879)
+|++|++|+|
T Consensus 280 ~~~~~yfiEmN 290 (449)
T COG0439 280 SNGEFYFIEMN 290 (449)
T ss_pred CCCCEEEEEEe
Confidence 5999999999
No 78
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.77 E-value=0.00081 Score=75.55 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=100.2
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002799 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (879)
Q Consensus 84 ~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (879)
+.-+..+....+||.+..+.|.++|||+|+++ . + + ++ +..|+|+||..|.+ +-.++.
T Consensus 111 ~~gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~-~-~----------~~--------i~~PvIVKp~~g~g-gkGv~i 167 (358)
T PRK13278 111 MFGNREILRWEADRDKERKLLEEAGIRIPRKY--E-S-P----------ED--------IDRPVIVKLPGAKG-GRGYFI 167 (358)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEe--C-C-H----------HH--------cCCCEEEEeCCCCC-CCCeEE
Confidence 33456678888999999999999999999962 1 1 1 11 23699999988863 344444
Q ss_pred ccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE---CCceeEEEeeeCCC-CCCeeee--
Q 002799 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGVVMR-- 237 (879)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytV---G~~~vhAe~RKSP~-~DG~vrr-- 237 (879)
..+..- ....++.+-++. . +.....+|.||||.-.--.+=+|+. |.-...++.|+=-. .||.||-
T Consensus 168 ~~s~~E-l~~~~~~l~~~~-~-------~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~ 238 (358)
T PRK13278 168 AKSPEE-FKEKIDKLIERG-L-------ITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPA 238 (358)
T ss_pred eCCHHH-HHHHHHHHHhcc-c-------cCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccceeeccc
Confidence 444321 222333221110 1 1126779999999742222335543 55455565554433 4666661
Q ss_pred c---CCCCceee------eeeCC----HHHHHHHHHHHHH----h-CCcee--EEEEEeeC-CCcEEEecCCcc
Q 002799 238 N---PDGKEVRY------PVLLT----PNEKQMAREVCIA----F-RQAVC--GFDLLRCE-GRSYVCDVNGWS 290 (879)
Q Consensus 238 N---~~gke~r~------pv~Lt----~eEk~iA~ka~~a----f-gq~Vc--GfDLLRs~-g~syV~DVNGwS 290 (879)
+ ..+..-.+ |+.+. ++-.+++.+++++ + +..+| .+|...+. +..||+|||+--
T Consensus 239 ~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 239 KDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred hhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 1 11222222 22222 4555667777776 5 44444 56777764 456999998754
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.52 E-value=0.00033 Score=77.52 Aligned_cols=147 Identities=26% Similarity=0.431 Sum_probs=100.5
Q ss_pred CCch-hhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEec
Q 002799 86 NELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (879)
Q Consensus 86 Ndl~-~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp 164 (879)
|+.. ....+-+|.+.|..|...|.|.|.+.-+. -+. -| .+|.|+||++|.
T Consensus 110 n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e----------------~~~-~g---ekt~IlKPv~Ga--------- 160 (389)
T COG2232 110 NEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIE----------------PLE-EG---EKTLILKPVSGA--------- 160 (389)
T ss_pred CCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhh----------------hhh-hc---ceeeEEeeccCC---------
Confidence 5555 66677789999999999999988653331 111 22 379999999996
Q ss_pred cCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---------CCceeEEEEECCceeEEEeeeCCCCCCee
Q 002799 165 SSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---------GGTDVKVYTVGPEYAHAEARKSPVVDGVV 235 (879)
Q Consensus 165 ~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t---------~G~DIKVytVG~~~vhAe~RKSP~~DG~v 235 (879)
| |. ++.+. ++-+. . -.-+|.||||+- +|.|....+|...++. | +
T Consensus 161 ---G-G~---~el~~-----~~Ee~---~-~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~----------~-~ 213 (389)
T COG2232 161 ---G-GL---VELVK-----FDEED---P-PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID----------G-L 213 (389)
T ss_pred ---C-ce---eeecc-----ccccc---C-CcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec----------c-c
Confidence 3 32 33331 22111 0 167899999973 4666666666555543 1 1
Q ss_pred eecCC-----CCceeeeeeCCHHHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecCC
Q 002799 236 MRNPD-----GKEVRYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (879)
Q Consensus 236 rrN~~-----gke~r~pv~Lt~eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV~DVNG 288 (879)
+.+-. |-=..+++..-++-.++|..+..-||+ .--|||++-...||||+|||=
T Consensus 214 ~~~~~~f~Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVNP 272 (389)
T COG2232 214 RGEYSQFVYKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNP 272 (389)
T ss_pred ccccccceeccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEecC
Confidence 12222 445666777777778899999999997 467999999999999999993
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.50 E-value=2.5e-05 Score=81.43 Aligned_cols=163 Identities=20% Similarity=0.323 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 002799 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (879)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (879)
||..+.+++++.|||+|.....--. ..++.+.+ -+.+++|+++||..|- -|.|++ ++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~-a~~iGyPVliKas~gg-----------GG~gm~-iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEF-AEEIGYPVLIKASAGG-----------GGRGMR-IV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHH-HHHH-SSEEEEETTSS-----------TTTSEE-EE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHH-HHhcCCceEEeecccc-----------cccccc-cc
Confidence 7999999999999999987766211 12334432 2346799999999875 233332 33
Q ss_pred hhcCCCcccccccccccc----cCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCC--ceee
Q 002799 176 RKVGNRSSEFHPDVRRVR----REGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGK--EVRY 246 (879)
Q Consensus 176 rkign~sS~~~p~~~~~r----~~gsyIyQEFI~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gk--e~r~ 246 (879)
.....-.+.+.... ... .++.+++|+|+.. .+-|-|=++++ +++|.-.|-.- ..+ -+|+ +..=
T Consensus 58 ~~~~eL~~~~~~~~-~~s~~~fg~~~v~iek~i~~-~reiEvqvi~D~~gn~~~~~~~e~~-----~~~-hs~dsi~~~P 129 (211)
T PF02786_consen 58 HNEEELEEAFERAQ-RESPAAFGDGPVLIEKFIEG-AREIEVQVIRDGKGNVVHLGERECS-----EQR-HSQDSIEEAP 129 (211)
T ss_dssp SSHHHHHHHHHHHH-HHHHHHHSTS-EEEEE--SS-EEEEEEEEEEETTSEEEEEEEEEEE-----EEE-TTEEEEEEES
T ss_pred cchhhhhhhhhhcc-ccCccccccceEEEeeehhh-hhhhhhhhhhccccceeeeeeeccc-----ccc-ccccceeEee
Confidence 22211111111000 001 2788999999986 23444444443 45666666552 222 2233 3343
Q ss_pred eeeCCHHHH----HHHHHHHHHhCC-ceeEEEEEee--CCCcEEEecCCc
Q 002799 247 PVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNGW 289 (879)
Q Consensus 247 pv~Lt~eEk----~iA~ka~~afgq-~VcGfDLLRs--~g~syV~DVNGw 289 (879)
+..||+++. ++|.++|+++|. .+|-|-++-. ++..||+|||=.
T Consensus 130 ~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 130 AQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp -SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred ccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 457888665 478999999995 5888999999 688999999954
No 81
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.48 E-value=0.00049 Score=77.39 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHH
Q 002799 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKE 173 (879)
Q Consensus 95 ~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~r 173 (879)
+||+..|.+|.++|||+|+++-. |. + +..|+|+||..|.. -...++.-++. ..
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~----p~-------------e-----Id~PVIVKp~~asG~~srG~f~a~s~----eE 178 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKD----PE-------------E-----IDRPVIVKLPEAKRRLERGFFTASSY----ED 178 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecC----cc-------------c-----cCccEEEEECCCCCccccCeEeeCCH----HH
Confidence 47899999999999999999873 10 1 23699999999971 01122211111 11
Q ss_pred HHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE--CC--ceeEEEeeeCCCCCCeeee------------
Q 002799 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMR------------ 237 (879)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytV--G~--~~vhAe~RKSP~~DG~vrr------------ 237 (879)
|.++....+ .-....-.....+++||||.-.--.+-+|.. -+ +++..-.|---.+||.+|-
T Consensus 179 l~~~a~~l~---~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p 255 (366)
T PRK13277 179 FYEKSEELI---KAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEP 255 (366)
T ss_pred HHHHHHhhh---hcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCC
Confidence 222111000 0000000122567899999642223335543 34 4555555533336776662
Q ss_pred -cCCCCceeeeeeCC----HHHHHHHHHHHHHhCC-----ce--eEEEEEeeC-CCcEEEecC
Q 002799 238 -NPDGKEVRYPVLLT----PNEKQMAREVCIAFRQ-----AV--CGFDLLRCE-GRSYVCDVN 287 (879)
Q Consensus 238 -N~~gke~r~pv~Lt----~eEk~iA~ka~~afgq-----~V--cGfDLLRs~-g~syV~DVN 287 (879)
+.--|+ .|+.++ ++-.+++.+++++++. .+ ..+|.+.++ +..||+|||
T Consensus 256 ~~vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EIn 316 (366)
T PRK13277 256 RYIEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVA 316 (366)
T ss_pred ceEEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEc
Confidence 122222 233344 4566778888899873 22 245666654 679999999
No 82
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0011 Score=73.28 Aligned_cols=221 Identities=20% Similarity=0.268 Sum_probs=137.7
Q ss_pred EeecCcccCChhHH-------------HHHHHHhccCCeEEEEeCCcccccCCCccCCCcceeeccccCCCcHHHHHHHH
Q 002799 11 VCVMEKKVFSAPMG-------------QILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYA 77 (879)
Q Consensus 11 VCaM~~Ka~SkPm~-------------~IL~rL~~~~~f~~iiF~d~~IL~e~ve~wP~~D~lIsf~s~GfpL~kai~y~ 77 (879)
|.|.|+=+....|| +-|..+++...+|.||-.=+-| ..|.|+-+=..|
T Consensus 38 ViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI---------~td~L~elE~~G---------- 98 (394)
T COG0027 38 VIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI---------ATDALVELEEEG---------- 98 (394)
T ss_pred EEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh---------hHHHHHHHHhCC----------
Confidence 67788888777776 5577777777788777544433 223444444444
Q ss_pred HhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC
Q 002799 78 TLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (879)
Q Consensus 78 ~lr~p~~iNdl~~q~il~DR~~~~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged 156 (879)
-.+|-...+-++..||-..-++. ++.|+||-++-|++.. +++.. .-+.+++|.|+||+-++
T Consensus 99 ----~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~------------~e~~~-a~~~iGfPcvvKPvMSS- 160 (394)
T COG0027 99 ----YTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSL------------EELRA-AVEKIGFPCVVKPVMSS- 160 (394)
T ss_pred ----ceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccH------------HHHHH-HHHHcCCCeeccccccc-
Confidence 44444444445555643332222 2349999999999653 22332 22346799999999988
Q ss_pred cceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCC--ceeEEEEECCc--eeEEEeeeCCCC
Q 002799 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGG--TDVKVYTVGPE--YAHAEARKSPVV 231 (879)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFI~t~G--~DIKVytVG~~--~vhAe~RKSP~~ 231 (879)
.|-|. -+.++..+-.+-++--..--| ..+..|+|+||+-+- |=+-|=.+++. || +|
T Consensus 161 ----------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc------~P-- 221 (394)
T COG0027 161 ----------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFC------AP-- 221 (394)
T ss_pred ----------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcC------CC--
Confidence 78775 477766544444442111113 467799999998722 33333333443 44 34
Q ss_pred CCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhC-CceeEEEEEeeCCCcEEEecC
Q 002799 232 DGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDVN 287 (879)
Q Consensus 232 DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afg-q~VcGfDLLRs~g~syV~DVN 287 (879)
-|..+-+-+=-|.-.|-.+|+. -+.||.+|+.|+| ..+-||.|.-+.+.-|.-||-
T Consensus 222 IGHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEVS 282 (394)
T COG0027 222 IGHRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVS 282 (394)
T ss_pred cccccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeecC
Confidence 2333333333677889999974 4668888889987 579999998888877777774
No 83
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=96.97 E-value=0.0031 Score=64.27 Aligned_cols=149 Identities=21% Similarity=0.329 Sum_probs=79.2
Q ss_pred HHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhcCCC
Q 002799 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNR 181 (879)
Q Consensus 104 L~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~ 181 (879)
|++.|||+|.+..+... +-+.-....++.|+|.|+..| - .++.++-...+. ..+.++.+
T Consensus 1 l~~~gip~~~~~~i~~~-------------~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~d---l~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSL-------------EDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEED---LEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSH-------------HHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGG---HHHHHHHT---
T ss_pred CcccCCCCCCeEEECCH-------------HHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHH---HHHHHHhc---
Confidence 78999999999999753 122223334678999997665 3 233333333221 22233322
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHH
Q 002799 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 257 (879)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~i 257 (879)
..+.+|.|+||+- ...|=|.++-+. .-+.+.=|++ ..+.+|-.-...-.|..+++ +-++|
T Consensus 62 ------------~~~~~ilE~~v~f-~~EiSvivaR~~--~G~~~~yp~~-en~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPF-DREISVIVARDQ--DGEIRFYPPV-ENVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---E-SEEEEEEEEEET--TSEEEEEEEE-EEEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCC-cEEEEEEEEEcC--CCCEEEEcCc-eEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999984 444444444211 1112222211 01122222234455666764 55678
Q ss_pred HHHHHHHhC-CceeEEEEEeeCCC--cEEEecC
Q 002799 258 AREVCIAFR-QAVCGFDLLRCEGR--SYVCDVN 287 (879)
Q Consensus 258 A~ka~~afg-q~VcGfDLLRs~g~--syV~DVN 287 (879)
|.+|+.+++ -.|-+|.+.-+.++ -||-|+-
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEia 158 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIA 158 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEecc
Confidence 888888887 46788899888554 5788774
No 84
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.0027 Score=70.79 Aligned_cols=199 Identities=20% Similarity=0.248 Sum_probs=134.6
Q ss_pred HHhcCCcccCCchhhhHhhhHHHHHHHHHhC-------CCCC-CCEEEEeccCCCccccccccccceeeecCeeccCcEE
Q 002799 77 ATLRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFV 148 (879)
Q Consensus 77 ~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~-------gIP~-P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfV 148 (879)
+..-+.+.||++.+.+-+-||--+..-|.+. .+|+ |.|.+-+ +...+..- .+|+|
T Consensus 181 ~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn-------------HK~m~s~~----tyPvV 243 (488)
T KOG3895|consen 181 LQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN-------------HKEMLSQP----TYPVV 243 (488)
T ss_pred HHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC-------------chhhccCC----CCcEE
Confidence 3455788999999999999988777767653 2443 2222222 22333222 37999
Q ss_pred EeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEeee
Q 002799 149 EKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARK 227 (879)
Q Consensus 149 eKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RK 227 (879)
+|--.|- +|-|-. |+.|....-|-+. .+. .+.---.|-||.. --||||=-||.+|-+=|.|
T Consensus 244 Vkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDa-KYDiriQKIG~nYKaymRt- 305 (488)
T KOG3895|consen 244 VKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYMRT- 305 (488)
T ss_pred EEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhccccccc-cceeehhhhhhhHHHHhhh-
Confidence 9998886 776643 4555544333211 122 2233346778877 4699999999999777655
Q ss_pred CCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC-CceeEEEEEee-CCCcEEEecCCccccccchhhH----HH
Q 002799 228 SPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRC-EGRSYVCDVNGWSFVKNSYKYY----DD 301 (879)
Q Consensus 228 SP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afg-q~VcGfDLLRs-~g~syV~DVNGwSFVK~n~kYY----dd 301 (879)
| +.|.|.+|+ |-.+-+.|-.++..|...-.++..|| ++||.||+|-+ .|+-||+|||+-| .-|+ ++
T Consensus 306 s--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~s-----mpliGeh~ee 377 (488)
T KOG3895|consen 306 S--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSS-----MPLIGEHQEE 377 (488)
T ss_pred h--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccc-----ccccccchhH
Confidence 5 499999997 56677788889999988888889996 89999999999 5779999999854 2333 22
Q ss_pred HHHHHHHHHHHhhCCCC
Q 002799 302 AACVLRKMFLEAKAPHL 318 (879)
Q Consensus 302 cA~iL~~~~l~~~~~~~ 318 (879)
=.+.+..+....+++.+
T Consensus 378 Drql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 378 DRQLISELVVSKMAQLL 394 (488)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 23445555555555544
No 85
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.66 E-value=0.01 Score=67.60 Aligned_cols=194 Identities=20% Similarity=0.228 Sum_probs=111.8
Q ss_pred CcceeeccccCCCcHHHHHHHHHh-----cC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002799 56 ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (879)
Q Consensus 56 ~~D~lIsf~s~GfpL~kai~y~~l-----r~-p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (879)
+.|++++-++-..+|.-+++--+. .+ +.+.++.++..+..||++..+.+.++|+|+| +.+++..
T Consensus 70 ~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~--------- 139 (400)
T COG0458 70 RPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSV--------- 139 (400)
T ss_pred CcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccH---------
Confidence 459999999999898655553332 13 4678999999999999999999999999999 3333221
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccc--cCcceEEeeccCC
Q 002799 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPT 206 (879)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r--~~gsyIyQEFI~t 206 (879)
.+.++... .++.|+|+||-.|. -|.|+. .++.. .++..-.. ..+ .-...+.||+|..
T Consensus 140 ~e~~~~~~----~ig~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~~~l~~s~~~~vl~eesi~G 199 (400)
T COG0458 140 EEADEIAD----EIGYPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIEEGLRASPVEEVLIEESIIG 199 (400)
T ss_pred HHHhhhHh----hcCCCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHHhccccCccccceeeeeecC
Confidence 12233333 34589999999986 332443 22211 11110000 111 1234567777765
Q ss_pred ----------CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceee---eeeCCHHHHH----HHHHHHHHhCCc-
Q 002799 207 ----------GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRY---PVLLTPNEKQ----MAREVCIAFRQA- 268 (879)
Q Consensus 207 ----------~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~---pv~Lt~eEk~----iA~ka~~afgq~- 268 (879)
++.|-.++ +-.|.+-=| .| .|-|.... .-.|+..|-+ .|.++.+++|..
T Consensus 200 ~ke~e~ev~rd~~~n~iv------vc~men~dp--~g-----vhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G 266 (400)
T COG0458 200 WKEFEYEVVRDGKDNCIV------VCNMENLDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEG 266 (400)
T ss_pred ceEEEEEEEEeCCCCEEE------EEeCCcccc--cc-----ccccceeeeccccccccHHHHHHHHHHHHHHHHhcccC
Confidence 22222222 223444333 22 22233222 2245665554 445788888865
Q ss_pred eeEEEEEeeC--CCcEEEecC-Ccccc
Q 002799 269 VCGFDLLRCE--GRSYVCDVN-GWSFV 292 (879)
Q Consensus 269 VcGfDLLRs~--g~syV~DVN-GwSFV 292 (879)
=|-|+.--.. +..||+||| .+|=.
T Consensus 267 ~~niQ~av~~~~~~~~viEvNpRvSrs 293 (400)
T COG0458 267 GCNIQFAVDPGGGELYVIEINPRVSRS 293 (400)
T ss_pred CCceeEEEcCCCceEEEEEecCCcCcc
Confidence 2445555443 358999999 66644
No 86
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=96.22 E-value=0.027 Score=58.82 Aligned_cols=164 Identities=20% Similarity=0.263 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcE-EEeeccc-cCcceeEEeccCC-CChHH
Q 002799 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 172 (879)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPf-VeKpv~G-edHni~IYyp~~~-GgG~~ 172 (879)
+|..+=++++++||||+++...... .+...+|+-. ..|. |+|+--- ...++.|.-.... -...+
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~---------~~A~~~l~~~----~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDY---------EEALEYLEEQ----GYPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSH---------HHHHHHHHHH----SSSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCH---------HHHHHHHHhc----CCCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 5778889999999999987777532 1334555433 3578 9998432 2344444432221 11122
Q ss_pred HHHhhcCCCccccccccccc-ccCcceEEeeccCCCCceeEEEEECCceeEEE-----eeeCCCCCCeeeecCCCCceee
Q 002799 173 ELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 246 (879)
Q Consensus 173 rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe-----~RKSP~~DG~vrrN~~gke~r~ 246 (879)
++|.. . .+ ..+...|.|||+.-.=--+=++|=|..++.-- .|-- ||+-=-|+-|=|.-.
T Consensus 69 ~~~~~-----~-------~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVD-----R-------KFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTS-----S-------TTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhccc-----c-------ccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 22220 0 11 13567899999974444455677777765322 2444 788888888777666
Q ss_pred eeeC-CHHH-----HHHHHHHHHHh---CCceeE---EEEEeeCCCcEEEecC
Q 002799 247 PVLL-TPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVN 287 (879)
Q Consensus 247 pv~L-t~eE-----k~iA~ka~~af---gq~VcG---fDLLRs~g~syV~DVN 287 (879)
|+.. |+++ ++|...+.+++ |...+| +.|+-+.+||+|+|-|
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 7754 5543 23444444444 555666 4777788999999998
No 87
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.086 Score=59.78 Aligned_cols=194 Identities=19% Similarity=0.232 Sum_probs=115.0
Q ss_pred HHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEee
Q 002799 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (879)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKp 151 (879)
.+++++... ..+-=..+...+.+||+.-=+.|+++|||+|.+..+.+. +|... -...|+.|+|+|.
T Consensus 76 ~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~------------~el~~-~~~~~g~p~VlKt 141 (375)
T COG0026 76 EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSA------------EELDA-AAADLGFPAVLKT 141 (375)
T ss_pred HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCH------------HHHHH-HHHHcCCceEEEe
Confidence 566666665 445557788999999999999999999999999999753 12221 2234568999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC
Q 002799 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 231 (879)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~ 231 (879)
--|- -.|-|.. .++......+... ..-..+..|.|+|++=. .-|-|.++ +-.-.+.+.=|++
T Consensus 142 r~gG----------YDGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~-~EiSvi~a--R~~~G~~~~yP~~ 203 (375)
T COG0026 142 RRGG----------YDGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFE-REISVIVA--RSNDGEVAFYPVA 203 (375)
T ss_pred cccc----------ccCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccc-eEEEEEEE--EcCCCCEEEeccc
Confidence 9873 1355543 3332221111111 11123444999999873 34444444 2112233333422
Q ss_pred CCeeeecCCCCcee-e---eeeCC----HHHHHHHHHHHHHhCC-ceeEEEEEeeCCC-cEEEecCCccccccchhhHHH
Q 002799 232 DGVVMRNPDGKEVR-Y---PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVNGWSFVKNSYKYYDD 301 (879)
Q Consensus 232 DG~vrrN~~gke~r-~---pv~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs~g~-syV~DVNGwSFVK~n~kYYdd 301 (879)
-|.|..++= + |..++ .+-++||.+++.+++. .|-||.+.-..+| -+|-|.- +=|-||-.|=-+
T Consensus 204 -----eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiA--PRvHNSGH~T~~ 276 (375)
T COG0026 204 -----ENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIA--PRVHNSGHWTID 276 (375)
T ss_pred -----ceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeecc--CCCCCccccchh
Confidence 366655542 2 22244 4566788888888874 6788888888774 4454432 344455555444
Q ss_pred HHH
Q 002799 302 AAC 304 (879)
Q Consensus 302 cA~ 304 (879)
.+.
T Consensus 277 gc~ 279 (375)
T COG0026 277 GCE 279 (375)
T ss_pred hcc
Confidence 433
No 88
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=95.06 E-value=0.52 Score=50.46 Aligned_cols=178 Identities=20% Similarity=0.256 Sum_probs=99.2
Q ss_pred hhHhhhHHHHHHHHHhCC--CCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCC
Q 002799 91 QHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAG 168 (879)
Q Consensus 91 q~il~DR~~~~qiL~~~g--IP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~G 168 (879)
-..+-||..|-..+++.+ ..+|.++-+-.+ + + +++-..+..+||+||..|+. .+.|+.-++..
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~-~-----------~--~i~~~~Lp~~fViK~nhgsg-~~~i~~dk~~~ 79 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLLGVYDN-P-----------D--DIDFDSLPDKFVIKPNHGSG-SNIIVRDKSKL 79 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECceeecCCC-h-----------h--hhhhhcCCCCEEEEEecCCC-cEEEEeCCccc
Confidence 346779999999999886 445555544332 1 1 22333456799999999985 44455544432
Q ss_pred C--hHHHHHhh-cCCCcccccccccccc-cCcceEEeeccCC-CC---ceeEEEEECCc--eeEEEeeeCCC-----CCC
Q 002799 169 G--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSPV-----VDG 233 (879)
Q Consensus 169 g--G~~rLfrk-ign~sS~~~p~~~~~r-~~gsyIyQEFI~t-~G---~DIKVytVG~~--~vhAe~RKSP~-----~DG 233 (879)
- -.++.+++ ....-.....+- ..+ -.--.|.||+|.. .| .|.|+|+.+++ ++.......+. .|.
T Consensus 80 d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~yd~ 158 (239)
T PF14305_consen 80 DIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNFYDR 158 (239)
T ss_pred CHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEEECc
Confidence 1 11111221 111111111111 122 2445899999999 66 79999999995 44444432210 111
Q ss_pred eeeecC------CCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecC
Q 002799 234 VVMRNP------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN 287 (879)
Q Consensus 234 ~vrrN~------~gke~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVN 287 (879)
+|.+=. .+..+..|-.| ++..++|.++|+-|. .|=||+..++|+.|.-|.=
T Consensus 159 dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGElT 215 (239)
T PF14305_consen 159 DWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGELT 215 (239)
T ss_pred ccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEeee
Confidence 111000 11122222222 355567777777654 7899999999999999974
No 89
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=94.52 E-value=0.11 Score=57.71 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=93.1
Q ss_pred hHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCCh
Q 002799 92 HLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGG 170 (879)
Q Consensus 92 ~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG 170 (879)
.-+-.|=.-|.+-.+.|+|.|+|+.++.. +...+-.+..|+|.||-.|- .|-+ |
T Consensus 110 ~wlceKPllY~ra~elgl~~P~Ty~v~S~---------------~d~~~~el~FPvILKP~mgg~~~~~----------a 164 (415)
T COG3919 110 RWLCEKPLLYNRAEELGLPYPKTYLVNSE---------------IDTLVDELTFPVILKPGMGGSVHFE----------A 164 (415)
T ss_pred HHHhhCcHHHHHHHHhCCCCcceEEecch---------------hhhhhhheeeeEEecCCCCCcceee----------h
Confidence 33445667789999999999999999853 12233345689999997653 2211 1
Q ss_pred HHHHHhhcCCCccccccccc-ccc--cCcceEEeeccCCCCceeEEEEE----CCc---eeEEEeeeCCCCCCeeeecCC
Q 002799 171 MKELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPTGGTDVKVYTV----GPE---YAHAEARKSPVVDGVVMRNPD 240 (879)
Q Consensus 171 ~~rLfrkign~sS~~~p~~~-~~r--~~gsyIyQEFI~t~G~DIKVytV----G~~---~vhAe~RKSP~~DG~vrrN~~ 240 (879)
-.+.|+ +.++. ++..-.+ +.. --.+.|+||||+-+|+.-++|.- |-. +.+--+|+=|+ | |
T Consensus 165 raKa~~-a~d~e-e~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPv-d--f----- 234 (415)
T COG3919 165 RAKAFT-AADNE-EMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPV-D--F----- 234 (415)
T ss_pred hhheee-ccCHH-HHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCc-c--c-----
Confidence 122333 11110 0000000 011 23457999999999998888642 322 33334567774 3 2
Q ss_pred CCceeeeeeCCHHH--HHHHHHHHHHhC-CceeEEEEEee-CCCcE-EEecC
Q 002799 241 GKEVRYPVLLTPNE--KQMAREVCIAFR-QAVCGFDLLRC-EGRSY-VCDVN 287 (879)
Q Consensus 241 gke~r~pv~Lt~eE--k~iA~ka~~afg-q~VcGfDLLRs-~g~sy-V~DVN 287 (879)
|=..+.|++-++. -+-|+++-...+ -..+-||+=+. .+||| ++|||
T Consensus 235 -gytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 235 -GYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred -ccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 3334556665532 333455544444 34677999887 78899 99999
No 90
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=91.52 E-value=0.12 Score=58.80 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=41.3
Q ss_pred HHHHHhc--CCCCCCchhhh--cccccccceEeecCCchHHHHHHHHHHhhhcccCCCCccceeeEecCCCcc
Q 002799 496 EIAYWWG--SHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSML 564 (879)
Q Consensus 496 ~LG~~fR--Yp~~~~gLLrL--hst~rhDlKIysSdEgRVq~TAaaFakglL~legeLtPIlv~lV~kd~~lL 564 (879)
.+|..|| |- .-+|.+ |.--=.|+-++|+--+|.-.||-||-=+||--. ...||- ||-...|+
T Consensus 179 ~~G~~~r~~Y~---k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~i~---iR~s~s~~ 244 (487)
T KOG3672|consen 179 RLGKYFRHRYE---KTKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAPIQ---IRASNSSY 244 (487)
T ss_pred hhhHHHHHHHh---hccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhheee---eecCcccc
Confidence 5789999 63 122333 233345778999999999999999988887753 466763 55443343
No 91
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=91.14 E-value=0.39 Score=55.47 Aligned_cols=210 Identities=18% Similarity=0.254 Sum_probs=120.8
Q ss_pred HHHHHhccCCeEEEEeCCcccccCCCccCCCcceeeccccCCCcH---HHHHHHHHhcCCcccCCchhhhHhhhHHHHHH
Q 002799 26 ILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL---EKAESYATLRKPFLVNELEPQHLLHDRRKVYE 102 (879)
Q Consensus 26 IL~rL~~~~~f~~iiF~d~~IL~e~ve~wP~~D~lIsf~s~GfpL---~kai~y~~lr~p~~iNdl~~q~il~DR~~~~q 102 (879)
=|.++.....+|++|-|-+.-|-..| +|. |-..|+|. .|+-+..+ ++|..+=.
T Consensus 54 ~lv~fA~~~~idl~vVGPE~pL~~Gv-----vD~---l~~~Gi~vFGPsk~AA~lE----------------~SK~faK~ 109 (428)
T COG0151 54 ALVAFAKEKNVDLVVVGPEAPLVAGV-----VDA---LRAAGIPVFGPTKAAAQLE----------------GSKAFAKD 109 (428)
T ss_pred HHHHHHHHcCCCEEEECCcHHHhhhh-----HHH---HHHCCCceeCcCHHHHHHH----------------hhHHHHHH
Confidence 34455555678888888776554422 222 22445554 34444343 67999999
Q ss_pred HHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCc
Q 002799 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRS 182 (879)
Q Consensus 103 iL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~s 182 (879)
+++++|||++.+-..+.. .+..+||.-- +.|+|+||.-=. .|-|+. +......+.
T Consensus 110 fm~k~~IPta~y~~f~~~---------e~a~ayi~~~----g~piVVKadGLa-----------aGKGV~-V~~~~eeA~ 164 (428)
T COG0151 110 FMKKYGIPTAEYEVFTDP---------EEAKAYIDEK----GAPIVVKADGLA-----------AGKGVI-VAMTLEEAE 164 (428)
T ss_pred HHHHcCCCcccccccCCH---------HHHHHHHHHc----CCCEEEeccccc-----------CCCCeE-EcCCHHHHH
Confidence 999999999988877632 2455666533 379999993323 455664 332221111
Q ss_pred ccccccc--cccc-cCcceEEeeccCCCCceeEEEEECCceeE---E--EeeeCCCCCCeeeecCCCCceeeeee-CCHH
Q 002799 183 SEFHPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---A--EARKSPVVDGVVMRNPDGKEVRYPVL-LTPN 253 (879)
Q Consensus 183 S~~~p~~--~~~r-~~gsyIyQEFI~t~G~DIKVytVG~~~vh---A--e~RKSP~~DG~vrrN~~gke~r~pv~-Lt~e 253 (879)
.-.+--+ ..+. .....+.|||+.-.=--+=|+|=|..++- | -.|- .||+-=-|+-|=|.=.|.. +|++
T Consensus 165 ~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKra---~dgD~GPNTGGMGaysp~P~~t~e 241 (428)
T COG0151 165 AAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRA---YDGDTGPNTGGMGAYSPAPFITDE 241 (428)
T ss_pred HHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccccccc---cCCCCCCCCCCCCCCCCCCCCCHH
Confidence 1000000 0111 12468999999754455666666665432 1 1232 3788777887766555544 4555
Q ss_pred HHH-----HHHHHHHHh---CCceeEE---EEEeeCCCcEEEecC
Q 002799 254 EKQ-----MAREVCIAF---RQAVCGF---DLLRCEGRSYVCDVN 287 (879)
Q Consensus 254 Ek~-----iA~ka~~af---gq~VcGf---DLLRs~g~syV~DVN 287 (879)
.-+ |...+.+++ |-.++|| =|+-+.++|+|+|.|
T Consensus 242 ~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 242 VVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 333 334445555 4457777 234456789999999
No 92
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=89.44 E-value=0.4 Score=45.29 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=32.6
Q ss_pred cch---HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhhh
Q 002799 491 DNG---VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (879)
Q Consensus 491 hag---Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL 543 (879)
..| |+.+|+.|+- .|..-..||||+-.||+.||++|++++.
T Consensus 28 ~~G~~qa~~l~~~l~~------------~~~~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 28 EKGRQQARELGKALRE------------RYIKFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred HHHHHHHHHHHHHHHH------------hCCCCCEEEECChHHHHHHHHHHHHHhc
Confidence 455 9999999981 0122347999999999999999999985
No 93
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=88.99 E-value=0.59 Score=57.49 Aligned_cols=181 Identities=21% Similarity=0.272 Sum_probs=117.9
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 002799 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (879)
Q Consensus 83 ~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (879)
|+==.++....+-||-++-.+-.++|||+= -..++|. ++-+-++--.+..++|+++|..-|-
T Consensus 108 FIGP~~e~ld~~GdKv~Ar~~A~~agvPvi----pgt~~~~-------~~~ee~~~fa~~~gyPvmiKA~~GG------- 169 (1149)
T COG1038 108 FIGPKPEVLDMLGDKVKARNAAIKAGVPVI----PGTDGPI-------ETIEEALEFAEEYGYPVMIKAAAGG------- 169 (1149)
T ss_pred EeCCCHHHHHHhccHHHHHHHHHHcCCCcc----CCCCCCc-------ccHHHHHHHHHhcCCcEEEEEccCC-------
Confidence 555577889999999999998899999952 2223332 2112222123345699999998775
Q ss_pred eccCCCChHHHHHhhcCCCccccccc-cc---ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCee
Q 002799 163 YPSSAGGGMKELFRKVGNRSSEFHPD-VR---RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVV 235 (879)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~-~~---~~r~~gsyIyQEFI~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~v 235 (879)
-|.|+ |..|+...-...|.-- .. .+ -++...+|.|+.. -+-|-|=+.|+ ++||--.|-+-+ =
T Consensus 170 ----GGRGM-R~vr~~~~l~~~~~~AksEAkaAF-G~~eVyvEk~ve~-pkHIEVQiLgD~~GnvvHLfERDCSv----Q 238 (1149)
T COG1038 170 ----GGRGM-RVVRSEADLAEAFERAKSEAKAAF-GNDEVYVEKLVEN-PKHIEVQILGDTHGNVVHLFERDCSV----Q 238 (1149)
T ss_pred ----Cccce-eeecCHHHHHHHHHHHHHHHHHhc-CCCcEEhhhhhcC-cceeEEEEeecCCCCEEEEeecccch----h
Confidence 23343 3444332111111100 00 22 3444556778765 67788888885 689999998853 4
Q ss_pred eecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEEee-CCCcEEEecCCcccc
Q 002799 236 MRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 292 (879)
Q Consensus 236 rrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs-~g~syV~DVNGwSFV 292 (879)
|||--==|++-.+-|+++.+ +-|.|+|+..|-.=+| |..|-. .|+.|.+|||=---|
T Consensus 239 RRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 239 RRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred hccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee
Confidence 77777778888888998765 4689999999977666 677776 458999999965554
No 94
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=87.66 E-value=0.55 Score=54.08 Aligned_cols=55 Identities=31% Similarity=0.457 Sum_probs=42.1
Q ss_pred cch---HHHHHHHhc--CCCCCCchhhhcccc-cccceEeecCCchHHHHHHHHHHhhhcccCC
Q 002799 491 DNG---VNEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (879)
Q Consensus 491 hag---Ae~LG~~fR--Yp~~~~gLLrLhst~-rhDlKIysSdEgRVq~TAaaFakglL~lege 548 (879)
..| +-+||+.+| |=-.+ ++ |-..| +.++.|+|||=-|+.|||++..+||+.-++.
T Consensus 73 ~~G~~Q~~~LG~~LR~rYvr~~-~f--L~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 73 DRGMEQMFELGRFLRKRYVRYG-NF--LSPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-cc--CCcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 556 889999999 32111 13 22222 7799999999999999999999999998755
No 95
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=85.37 E-value=7 Score=38.45 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=53.2
Q ss_pred cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHH--HhCCce
Q 002799 192 VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAV 269 (879)
Q Consensus 192 ~r~~gsyIyQEFI~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~--afgq~V 269 (879)
...+...+..|-++ -..--|+|++.++++.+ .+-. |..+.. ..++.-.-|.++.. .-.-..
T Consensus 32 ~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~-s~Y~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~p~~ 94 (130)
T PF14243_consen 32 LDPDTPVLVSEVVE-IESEWRCFIVDGEVVTG-SPYR----GDWDLE-----------PDPDVVAFAIQALAAAWTLPPA 94 (130)
T ss_pred CCCCceEEEeceEe-eeeeEEEEEECCEEEEE-eecC----CCcccC-----------CCHHHHHHHHHHHHhcccCCCe
Confidence 33566677777777 47778999999986654 3331 111111 13444444444444 445788
Q ss_pred eEEEEEee-CCCcEEEecC-Ccc
Q 002799 270 CGFDLLRC-EGRSYVCDVN-GWS 290 (879)
Q Consensus 270 cGfDLLRs-~g~syV~DVN-GwS 290 (879)
|.+|+=+. +|+.+|+|+| ||+
T Consensus 95 ~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 95 YVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEEeCCCCEEEEEecCccc
Confidence 99999999 7789999999 554
No 96
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=84.72 E-value=1.9 Score=51.11 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=116.6
Q ss_pred HHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecc
Q 002799 75 SYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVH 153 (879)
Q Consensus 75 ~y~~lr~p-~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~ 153 (879)
+-|+..+. |+==+..++..+-||..+-+|.+++|||+=.-+ ++ ...+++-..-....|++|+.+|++.
T Consensus 89 e~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~----~g-------~~qs~e~~~~~a~eIgyPvMiKa~~ 157 (670)
T KOG0238|consen 89 ELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGY----HG-------EDQSDEEAKKVAREIGYPVMIKATA 157 (670)
T ss_pred HHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCc----cc-------ccccHHHHHHHHHhcCCcEEEEecc
Confidence 33444443 333456778888899999999999999953211 11 1222333332345688999999998
Q ss_pred ccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-------ccCcceEEeeccCCCCceeEEEEECC---ceeEE
Q 002799 154 GDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-------RREGSYIYEEFMPTGGTDVKVYTVGP---EYAHA 223 (879)
Q Consensus 154 GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-------r~~gsyIyQEFI~t~G~DIKVytVG~---~~vhA 223 (879)
|- -|.|+ |+..+-+ +|.-.+... =-+...+.|.||.. -+-|-|=|.|+ +++|-
T Consensus 158 GG-----------GGkGM-ria~~~~----ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n-pRHiEvQv~gD~hGnav~l 220 (670)
T KOG0238|consen 158 GG-----------GGKGM-RIAWSEE----EFEEGLESAKQEAAKSFGDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVHL 220 (670)
T ss_pred CC-----------CCcce-EeecChH----HHHHHHHHHHHHHHhhcCcchhhHHHhccC-CceEEEEEEecCCCcEEEe
Confidence 85 33344 3433221 111111111 13555788999987 56677777775 45676
Q ss_pred EeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEEe-eCCCcEEEecCCcccc
Q 002799 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLR-CEGRSYVCDVNGWSFV 292 (879)
Q Consensus 224 e~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~VcG-fDLLR-s~g~syV~DVNGwSFV 292 (879)
-.|-+-+ =|||--==|.+-.-.|+++-+ +-|.++|+|.|-.=+| |..|- +.+..|.+|+|--=-|
T Consensus 221 ~ERdCSv----QRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 221 GERDCSV----QRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV 291 (670)
T ss_pred cccccch----hhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee
Confidence 7777642 467766555555556666543 6789999999977676 45454 4677889999976555
No 97
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=79.16 E-value=0.99 Score=48.69 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=28.0
Q ss_pred cEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC----CC--ceeEEEEECC
Q 002799 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVGP 218 (879)
Q Consensus 146 PfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t----~G--~DIKVytVG~ 218 (879)
-+|+||..|+ +|.|.. |++... .+.. ......+.||+|+||+. +| -|||+||+=.
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~~----~i~~--~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNLE----QILR--FSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp -EEEEES------------------EE-EES-HH----HHHC--CHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred EEEEeccccC-----------CCCCce-ecCCHH----HHHH--HhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 5899998887 777764 665442 1110 01236889999999975 67 7999998733
No 98
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=76.73 E-value=2.1 Score=50.07 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=42.0
Q ss_pred ecc---cch---HHHHHHHhc--CCCCCCchhhhcccc-cccceEeecCCchHHHHHHHHHHhhhcccC
Q 002799 488 FYQ---DNG---VNEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (879)
Q Consensus 488 KWG---hag---Ae~LG~~fR--Yp~~~~gLLrLhst~-rhDlKIysSdEgRVq~TAaaFakglL~leg 547 (879)
.|| .-| --+||+.+| |-. .|||-=+..| ..++.|+|++-.|.++||++|..||.--.|
T Consensus 69 ~~GqLT~~G~~~~~~lG~~lR~rY~~--~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 69 KLGWLTPRGGELVTLLGHYQRQRLVA--DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHh--cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 366 555 357999999 632 3554322222 457899988878999999999999998766
No 99
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=76.05 E-value=2.8 Score=41.47 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=29.6
Q ss_pred cch---HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 491 DNG---VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 491 hag---Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
..| |+.||+.|+ + ..-| .||||.-.|++.||+++++.+
T Consensus 26 ~~G~~qa~~l~~~l~------~-------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 26 EKGAEQAAALREKLA------D-------VPFD-AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred hhHHHHHHHHHHHhc------C-------CCCC-EEEECchHHHHHHHHHHHhhc
Confidence 556 999999987 1 1112 499999999999999998753
No 100
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=75.86 E-value=2 Score=50.21 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.7
Q ss_pred CccceEEEEEEEEcCCCCccc
Q 002799 352 QSEELRCVIAVMRHGDRTPKQ 372 (879)
Q Consensus 352 ~~~eLr~vvaViRHgDRTPKQ 372 (879)
..++|+=|+.|.|||||||-+
T Consensus 30 ~~~~L~~Vvil~RHG~RaP~~ 50 (436)
T PRK10172 30 PELKLESVVIVSRHGVRAPTK 50 (436)
T ss_pred CCCeEEEEEEEeeCCCCCCCC
Confidence 457999999999999999964
No 101
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=75.72 E-value=5 Score=48.27 Aligned_cols=182 Identities=15% Similarity=0.201 Sum_probs=115.9
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 002799 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (879)
Q Consensus 83 ~~iNdl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (879)
|+==+..++..+-||..+=.+..+.|+|+=.-+ .++ +++.+.+.--..++++|+.+|..-|-
T Consensus 102 fIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~----~g~-------~qd~~~~~~~A~eiGyPVlIKAsaGG------- 163 (645)
T COG4770 102 FIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGY----HGP-------IQDAAELVAIAEEIGYPVLIKASAGG------- 163 (645)
T ss_pred EECCCHHHHHHhccHHHHHHHHHHcCCCccCCC----CCc-------ccCHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 444466788899999999999999999952211 112 33445554455678899999997775
Q ss_pred eccCCCChHHHHHhhcCCCccccccccc----ccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeeeCCCCCCee
Q 002799 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR----RVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVV 235 (879)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~----~~r~~gsyIyQEFI~t~G~DIKVytVG---~~~vhAe~RKSP~~DG~v 235 (879)
-|-|+ |+.++...-...|+.-.. .+ -++..+.|.|+.. -+-|-|=|.| ++++|.=+|-+-. =
T Consensus 164 ----GGKGM-Rvv~~~~e~~e~l~sarrEA~asF-Gddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSl----Q 232 (645)
T COG4770 164 ----GGKGM-RVVETPEEFAEALESARREAKASF-GDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSL----Q 232 (645)
T ss_pred ----CCCce-EeecCHHHHHHHHHHHHHHHHhhc-CCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccch----h
Confidence 23354 355544322222221000 11 4677889999987 5556666666 4678888887742 4
Q ss_pred eecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEEee-CCCcEEEecCCccccc
Q 002799 236 MRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFVK 293 (879)
Q Consensus 236 rrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs-~g~syV~DVNGwSFVK 293 (879)
|||--==|-+-.=-||++.+ +-|.++|++.|-.=+| |..|-. ++..|.+|+|--=-|-
T Consensus 233 RRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVE 296 (645)
T COG4770 233 RRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVE 296 (645)
T ss_pred hhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceecc
Confidence 56654444443344777665 4589999999977666 565655 4558899999655553
No 102
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=75.52 E-value=4.3 Score=49.53 Aligned_cols=178 Identities=21% Similarity=0.278 Sum_probs=113.8
Q ss_pred CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccC
Q 002799 87 ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 166 (879)
Q Consensus 87 dl~~q~il~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~ 166 (879)
+.+-..-+-||-.+-++--++|||+= -..++|- ....|..+++.- .+.|+|+|..-|-
T Consensus 138 speVi~~mGDKv~AR~~Ai~agVpvV----PGTpgPi---tt~~EA~eF~k~----yG~PvI~KAAyGG----------- 195 (1176)
T KOG0369|consen 138 SPEVIDSMGDKVAARAIAIEAGVPVV----PGTPGPI---TTVEEALEFVKE----YGLPVIIKAAYGG----------- 195 (1176)
T ss_pred CHHHHHHhhhHHHHHHHHHHcCCCcc----CCCCCCc---ccHHHHHHHHHh----cCCcEEEeecccC-----------
Confidence 44556677899999999999999952 1223442 122333444432 3479999998886
Q ss_pred CCChHHHHHhhcCCCccccccccc-cc--ccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCC
Q 002799 167 AGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPD 240 (879)
Q Consensus 167 ~GgG~~rLfrkign~sS~~~p~~~-~~--r~~gsyIyQEFI~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~ 240 (879)
-|.|+ |..|+...-...|.-... .. =.+|+..+|.|++. -+-|-|-..|+ +++|--.|-+-| -||--.
T Consensus 196 GGRGm-RvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSv----QRRHQK 269 (1176)
T KOG0369|consen 196 GGRGM-RVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSV----QRRHQK 269 (1176)
T ss_pred CCcce-EEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccch----hhhhcc
Confidence 33344 466655433222221111 11 16899999999987 56777777775 679999997753 233333
Q ss_pred CCceeeeeeCCHHHHH----HHHHHHHHhCCceeE-EEEEee-CCCcEEEecCCcccc
Q 002799 241 GKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 292 (879)
Q Consensus 241 gke~r~pv~Lt~eEk~----iA~ka~~afgq~VcG-fDLLRs-~g~syV~DVNGwSFV 292 (879)
==|++-.-.|.++-++ -|.|+|+..|-.=+| +..|-. +|+-|.+|||--=-|
T Consensus 270 VVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 270 VVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred eeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 3355545556665543 478999999987777 566666 678999999976555
No 103
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=68.29 E-value=3.4 Score=47.81 Aligned_cols=18 Identities=50% Similarity=0.898 Sum_probs=16.5
Q ss_pred ccceEEEEEEEEcCCCCc
Q 002799 353 SEELRCVIAVMRHGDRTP 370 (879)
Q Consensus 353 ~~eLr~vvaViRHgDRTP 370 (879)
.-+|.=|.+|.|||||||
T Consensus 31 ~~~Lefv~~i~RHGdRaP 48 (411)
T KOG3720|consen 31 NGELEFVQVIFRHGDRAP 48 (411)
T ss_pred CCceEEEEEEeecCCCCc
Confidence 348999999999999999
No 104
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=67.57 E-value=16 Score=42.49 Aligned_cols=65 Identities=25% Similarity=0.400 Sum_probs=46.4
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---CCc--eeEEEEECCc
Q 002799 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 219 (879)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t---~G~--DIKVytVG~~ 219 (879)
.+|.||+-| |.-||-|+-+ |+. +.+.-| .| .+..+|||+|.+- +|. =|=+++||++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g----~y--------~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDG----NY--------AEEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCC----CC--------CCCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 7777777743 222 221111 12 2577899999975 454 3778999999
Q ss_pred eeEEEeeeC
Q 002799 220 YAHAEARKS 228 (879)
Q Consensus 220 ~vhAe~RKS 228 (879)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 105
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=67.03 E-value=6.3 Score=37.77 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.+|+.|+.. + ++ --.||||.-.|++.||+++++++
T Consensus 34 a~~~~~~l~~~----~-------~~-~~~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 34 ARALGKRLKEL----G-------IK-FDRIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred HHHHHHHHHhc----C-------CC-CCEEEECcHHHHHHHHHHHHHhc
Confidence 89999988821 1 12 22599999999999999999987
No 106
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=65.02 E-value=10 Score=42.97 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 002799 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (879)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (879)
||..-|.+|.++||++|+.+-. |. ++++ |+|+|+-.+-
T Consensus 124 ~~~~~~~lLekAgi~~P~~~~~----Pe-------------eIdr-----~VIVK~pgAk 161 (361)
T COG1759 124 DRKLEYKLLEKAGLRIPKKYKS----PE-------------EIDR-----PVIVKLPGAK 161 (361)
T ss_pred chhhHHHHHHHcCCCCCcccCC----hH-------------HcCC-----ceEEecCCcc
Confidence 7888999999999999987543 21 2454 9999997775
No 107
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=63.03 E-value=4.3 Score=46.05 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeecc-CcEEEeec
Q 002799 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW-KPFVEKPV 152 (879)
Q Consensus 98 ~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~-kPfVeKpv 152 (879)
..+.++|++.|||+|++.++... ++....- ..++ +|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~~------------~ea~~~~-~~ig~~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATSV------------EEAEEIA-AKLGAGPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH------------HHHHHHH-HHhCCCcEEEEec
Confidence 45778999999999999988532 1222211 1245 79999997
No 108
>PRK13463 phosphatase PhoE; Provisional
Probab=62.83 E-value=8.3 Score=39.73 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (879)
|+.||+.|+ ++ .+ | .||||+-.|++-||++++..
T Consensus 37 a~~~~~~l~------~~-----~~--~-~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 37 AKQLGERMK------DL-----SI--H-AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred HHHHHHHhc------CC-----CC--C-EEEECCcHHHHHHHHHHHhc
Confidence 889999887 11 12 2 59999999999999999753
No 109
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=62.81 E-value=8 Score=39.60 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.||+.|+ + +.=| .||||+-.|++-||+++++.+
T Consensus 35 a~~l~~~l~------~-------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 35 AAALAERLA------D-------LPIA-AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred HHHHHHHHh------c-------CCCC-EEEeCcHHHHHHHHHHHHHhc
Confidence 899999887 1 1112 599999999999999999864
No 110
>PRK03482 phosphoglycerate mutase; Provisional
Probab=59.60 E-value=10 Score=39.09 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (879)
|+.+|+.|.- .++ | .||||.-.|++-||+++++.
T Consensus 36 A~~~~~~l~~----~~~---------~-~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 36 AMQVAERAKE----LGI---------T-HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred HHHHHHHHhc----CCC---------C-EEEECCcHHHHHHHHHHHHh
Confidence 8999998871 111 2 69999999999999999864
No 111
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=57.43 E-value=4.4 Score=43.24 Aligned_cols=47 Identities=36% Similarity=0.456 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 002799 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (879)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (879)
+-..++++|+..|||+|.+.++... ++.... -..+++|+|.|.++-.
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~~------------~ea~~~-a~~ig~PvvlKi~sp~ 57 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTSA------------EEAVAA-AEEIGFPVVLKIVSPD 57 (222)
T ss_dssp -HHHHHHHHHTTT------EEESSH------------HHHHHH-HHHH-SSEEEEEE-TT
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCCH------------HHHHHH-HHHhCCCEEEEEecCC
Confidence 4567899999999999999999653 233331 1235689999999864
No 112
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=57.40 E-value=11 Score=40.07 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.||+.|+- .| +.=| .||||+-.|++-||+++++++
T Consensus 23 A~~l~~~L~~----~~-------~~~d-~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 23 AREAGKLLKE----KG-------FRFD-VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred HHHHHHHHHh----cC-------CCCC-EEEECChHHHHHHHHHHHHhc
Confidence 8999998861 01 1112 599999999999999999766
No 113
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=57.26 E-value=11 Score=38.50 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (879)
|+.+|+.|+ ++ .-| +||||.-.|++-||++++++
T Consensus 35 a~~~~~~l~------~~-------~~~-~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 35 AQNLHTLLR------DV-------PFD-LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred HHHHHHHHh------CC-------CCC-EEEECchHHHHHHHHHHHhc
Confidence 889999887 11 012 59999999999999999875
No 114
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=56.40 E-value=12 Score=41.49 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCCchhh-hcccccccceEeecCCchHHHHHHHHHHhhh
Q 002799 494 VNEIAYWWGSHSEGTGLLR-LHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLr-Lhst~rhDlKIysSdEgRVq~TAaaFakglL 543 (879)
|+.||+.|+ ++.. .|.++.-| .||||+=.|++.||++++.++.
T Consensus 134 A~~lg~~L~------~~~~~~~~~~~~d-~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 134 ARITGKYLK------EQFGEILVDKKVK-AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred HHHHHHHHH------HhhccccccCCCC-EEEEcCcHHHHHHHHHHHHhCC
Confidence 899999888 2110 01112233 5999999999999999987753
No 115
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=55.60 E-value=31 Score=42.38 Aligned_cols=66 Identities=26% Similarity=0.378 Sum_probs=46.6
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---CC--ceeEEEEECCc
Q 002799 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 219 (879)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFI~t---~G--~DIKVytVG~~ 219 (879)
.+|.||+-| |.-||-|+-+. |.. +-+.-| .|. +..+|||+|.+- +| .=|=+++||++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~~-~~~~~g----~y~--------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EEV-LDKTSG----KFA--------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----CcE-eeccCC----CCC--------CCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 599999999 87788888542 221 212112 122 567899999975 22 44778999999
Q ss_pred eeEEEeeeC
Q 002799 220 YAHAEARKS 228 (879)
Q Consensus 220 ~vhAe~RKS 228 (879)
++..--|.+
T Consensus 592 ~aG~giRed 600 (619)
T PRK10507 592 YGGTCLRGD 600 (619)
T ss_pred EEEEEEecC
Confidence 999999987
No 116
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=53.67 E-value=7.1 Score=44.37 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeec-cCcEEEeec
Q 002799 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPV 152 (879)
Q Consensus 97 R~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~-~kPfVeKpv 152 (879)
-..+.++|+++|||+|.+.++... ++..... ..+ ++|+|+||.
T Consensus 5 e~~ak~lL~~~gIpvp~~~~~~~~------------~ea~~~a-~~i~g~PvVvK~~ 48 (388)
T PRK00696 5 EYQAKELFAKYGVPVPRGIVATTP------------EEAVEAA-EELGGGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHHcCCCCCCCeeeCCH------------HHHHHHH-HHcCCCcEEEEEe
Confidence 456778999999999999988643 2233221 123 589999996
No 117
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=53.65 E-value=15 Score=43.34 Aligned_cols=192 Identities=21% Similarity=0.294 Sum_probs=99.1
Q ss_pred eeEEEEeecCcccCChhHHHHHHHHhccCCeEEEE-------eCCcccccCCCccCCCcceee---------ccccCCCc
Q 002799 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIH-------FGDKVILEDPIEKWPICDCLI---------AFYSSGYP 69 (879)
Q Consensus 6 ~~~iGVCaM~~Ka~SkPm~~IL~rL~~~~~f~~ii-------F~d~~IL~e~ve~wP~~D~lI---------sf~s~Gfp 69 (879)
+.+|.|+=-.-..-+.--..+..++.+.| ++.+| |.|..+.. .+=.+|++. ..+..-=|
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G-~~~vI~d~~~L~y~~g~L~~----~~~~ID~VyRR~Vt~e~l~~~d~~~~ 259 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHG-YDCVICDPRDLEYRDGRLYA----GGRPIDAVYRRFVTSELLERYDEVQP 259 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHcC-CceEecChHHceecCCEEEE----CCEeeehhhHhhhhHHhhhccccchH
Confidence 34566554444333333345556666666 44444 22333322 445556543 33333345
Q ss_pred HHHHHHHHHhcCCcccCCchhhh--------HhhhHHHHH------HHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002799 70 LEKAESYATLRKPFLVNELEPQH--------LLHDRRKVY------EQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (879)
Q Consensus 70 L~kai~y~~lr~p~~iNdl~~q~--------il~DR~~~~------qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (879)
|-.|++ .+...++|++.+|- +|||-.... +-+-+.- +|-|..+... .. ..--+.-|.
T Consensus 260 li~Ay~---~~av~~vgsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H--vP~T~~l~~~-~~---~~~g~~~dL 330 (445)
T PF14403_consen 260 LIQAYR---DGAVCMVGSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH--VPWTRLLTAG-RT---TYQGEDVDL 330 (445)
T ss_pred HHHHHh---cCCeEEecchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh--CCceEEEcCc-cc---cccccchhH
Confidence 555555 78888999998863 444433322 1122222 4567777541 00 000011222
Q ss_pred ee--ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc--ccc--cCcceEEeeccCC---
Q 002799 136 VE--VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR--RVR--REGSYIYEEFMPT--- 206 (879)
Q Consensus 136 i~--v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~--~~r--~~gsyIyQEFI~t--- 206 (879)
++ +.. ..-+|+||.++- .|.|+- +| -+++++-. .++ .++.||+|||+.-
T Consensus 331 ~~~~~a~---r~~lVLKP~D~Y-----------gg~GV~-----~G---~e~~~eeW~~~l~~a~~~~yilQe~v~~~~~ 388 (445)
T PF14403_consen 331 VEFAIAN---RDRLVLKPNDEY-----------GGKGVY-----IG---WETSPEEWEAALEEAAREPYILQEYVRPPRE 388 (445)
T ss_pred HHHHHhc---hhcEEecccccc-----------CCCCeE-----EC---CcCCHHHHHHHHHHHhcCCcEEEEEecCCcc
Confidence 21 111 246999999985 333432 33 23333322 122 4669999999864
Q ss_pred ------CCc--------eeEEEEECCceeEEEeeeCCCCCCee
Q 002799 207 ------GGT--------DVKVYTVGPEYAHAEARKSPVVDGVV 235 (879)
Q Consensus 207 ------~G~--------DIKVytVG~~~vhAe~RKSP~~DG~v 235 (879)
+|+ ++=.|+-|++++.+-+|-|+ .+..
T Consensus 389 ~~~~~~dg~~~~~~~~~~~g~fly~~~~~G~~tR~g~--~~vi 429 (445)
T PF14403_consen 389 PMPAFEDGEVVFEEYPYDSGPFLYGGKFAGCYTRLGT--GNVI 429 (445)
T ss_pred ccccccCCceeEeeeeeeccceeECCEEEEEEEEecc--CCce
Confidence 121 23348889999999999995 4444
No 118
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=52.51 E-value=11 Score=35.62 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.+|+.|.- .-..--.||||.-.||+-||+++++++
T Consensus 34 A~~~~~~l~~------------~~~~~~~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 34 ARQLGEYLAE------------RDIQIDVIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp HHHHHHHHHH------------TTSSCSEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhcccccc------------cccCceEEecCCcchhhhhhchhhccc
Confidence 8888888761 001112399999999999999999954
No 119
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=51.54 E-value=16 Score=39.28 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.||+.|+- .+ +.=| .||||+=.|++.||++++..+
T Consensus 35 A~~la~~L~~----~~-------~~~d-~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 35 AKAAGKLLKE----EG-------YTFD-VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred HHHHHHHHHh----cC-------CCCC-EEEEcCCHHHHHHHHHHHHHc
Confidence 8999998871 01 1113 599999999999999998644
No 120
>PRK01112 phosphoglyceromutase; Provisional
Probab=49.77 E-value=18 Score=38.45 Aligned_cols=35 Identities=17% Similarity=-0.026 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.||+.|+ + .+=| .||||+=.|++.||+++++.+
T Consensus 36 a~~l~~~L~------~-------~~~d-~iysSpl~Ra~qTA~~i~~~~ 70 (228)
T PRK01112 36 AIAAGEKIK------D-------LPID-CIFTSTLVRSLMTALLAMTNH 70 (228)
T ss_pred HHHHHHHhh------c-------CCCC-EEEEcCcHHHHHHHHHHHHhh
Confidence 899999888 1 1112 599999999999999998643
No 121
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=48.58 E-value=19 Score=38.24 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHH
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAK 540 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFak 540 (879)
|+.+|+.|+- . ... | .||||+-.|++.||++|+.
T Consensus 88 A~~lg~~L~~-----~------~~~-d-~I~sSpa~Ra~qTAe~ia~ 121 (201)
T PRK15416 88 ARELGKAFSA-----D------IPD-Y-DLYSSNTVRTIQSATWFSA 121 (201)
T ss_pred HHHHHHHHhC-----C------CCC-C-EEEECCCHHHHHHHHHHhc
Confidence 8999999871 1 112 4 7999999999999999987
No 122
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=47.83 E-value=16 Score=42.50 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=38.4
Q ss_pred HHHHHHhc-CCCCCCchhhhccc-ccccceEeecCCchHHHHHHHHHHhhhcccC
Q 002799 495 NEIAYWWG-SHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (879)
Q Consensus 495 e~LG~~fR-Yp~~~~gLLrLhst-~rhDlKIysSdEgRVq~TAaaFakglL~leg 547 (879)
..||+.+| |. ...|||--+-- --.++.+||++--|.+.||+||+.||.--.+
T Consensus 80 ~~~G~~~r~~~-~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 80 VYMGHYMREWL-AQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred HHHHHHHHHHH-HHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 57999999 32 23466532110 1247999999999999999999999998665
No 123
>PRK13462 acid phosphatase; Provisional
Probab=46.00 E-value=19 Score=37.48 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHH
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAF 538 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaF 538 (879)
|+.+|+.++ ++ .+.++ .||||+-.|++.||++.
T Consensus 40 A~~l~~~l~------~~-----~~~~~-~i~sSpl~Ra~qTA~~i 72 (203)
T PRK13462 40 AELAGQALG------EL-----ELDDP-LVISSPRRRALDTAKLA 72 (203)
T ss_pred HHHHHHHHH------hC-----CCCCC-EEEECchHHHHHHHHHh
Confidence 888888776 11 12221 59999999999999986
No 124
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=44.01 E-value=11 Score=39.91 Aligned_cols=42 Identities=38% Similarity=0.579 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeecc
Q 002799 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 153 (879)
Q Consensus 99 ~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~ 153 (879)
.+-++|+++|||+|+..++... . +..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~--e-------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSP--E-------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSH--H-------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCH--H-------HHHHHHHHhCC----CcEEEEEeE
Confidence 4568999999999999999764 1 2233332 443 589999964
No 125
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.10 E-value=27 Score=30.51 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.3
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc
Q 002799 235 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 268 (879)
Q Consensus 235 vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~ 268 (879)
|+.+...-+..+|-.||++|+.+.-.+|.-+|+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5555668899999999999999999999999986
No 126
>PRK01295 phosphoglyceromutase; Provisional
Probab=42.74 E-value=28 Score=36.24 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.+|+.|+- .++ .+ | .||||+=.|++-||++++..+
T Consensus 37 A~~~~~~L~~----~~~-----~~--d-~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 37 AKAAGRKLKA----AGL-----KF--D-IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred HHHHHHHHHh----CCC-----CC--C-EEEeCCcHHHHHHHHHHHHHc
Confidence 8889988871 011 11 2 599999999999999998754
No 127
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=41.46 E-value=12 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCCCCCEEEEecc
Q 002799 97 RRKVYEQLEKYGIPVPRYALVNRE 120 (879)
Q Consensus 97 R~~~~qiL~~~gIP~P~t~~~~r~ 120 (879)
=..+.++|++.|||+|+..++...
T Consensus 32 EyqaK~LL~~~GIpvp~~~va~t~ 55 (422)
T PLN00124 32 EYQGAELMSKYGVNVPKGAAASSL 55 (422)
T ss_pred HHHHHHHHHHcCCCCCCceeeCCH
Confidence 345779999999999999998653
No 128
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=40.14 E-value=29 Score=36.62 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.||+.|+- . .+.-| .||||+=.|++.||+++++.+
T Consensus 35 a~~~~~~l~~------~-----~~~~d-~i~sSpl~Ra~~TA~~i~~~~ 71 (227)
T PRK14118 35 AKAAGKKLKE------A-----GYEFD-IAFTSVLTRAIKTCNIVLEES 71 (227)
T ss_pred HHHHHHHHHh------c-----CCCCC-EEEEeChHHHHHHHHHHHHhc
Confidence 8899998871 0 11223 599999999999999998753
No 129
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=40.08 E-value=25 Score=43.05 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHhc-CCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHh
Q 002799 494 VNEIAYWWG-SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (879)
Q Consensus 494 Ae~LG~~fR-Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (879)
|+.||+.|+ .+ .+ ++..||||+-.||+.||++|++.
T Consensus 452 A~~l~~~l~~~~-----------~~-~~~~V~sSpl~Ra~~TA~~i~~~ 488 (664)
T PTZ00322 452 SRALFEYFQKEI-----------ST-TSFTVMSSCAKRCTETVHYFAEE 488 (664)
T ss_pred HHHHHHHHHhcc-----------CC-CCcEEEcCCcHHHHHHHHHHHhc
Confidence 889998887 11 01 24589999999999999999864
No 130
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=38.80 E-value=12 Score=42.15 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=49.4
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccC--cceEEeeccCCCCc
Q 002799 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGT 209 (879)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~--gsyIyQEFI~t~G~ 209 (879)
.++.|+=--+.++.|+|.||+.|+ +|.|.+...+.+-+....-.+....+..+ .+.+.|+|. .|.
T Consensus 75 EDg~iqg~le~~giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l 141 (317)
T COG1181 75 EDGTIQGLLELLGIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGL 141 (317)
T ss_pred CCchHHHHHHHhCCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--ccc
Confidence 345554222345689999999999 88876533332322222222211122222 344444443 478
Q ss_pred eeEEEEECCceeEEEeeeC
Q 002799 210 DVKVYTVGPEYAHAEARKS 228 (879)
Q Consensus 210 DIKVytVG~~~vhAe~RKS 228 (879)
|-++||.+.+...+--|.-
T Consensus 142 ~~p~~Vkp~~~gSSvg~~~ 160 (317)
T COG1181 142 GFPLFVKPAREGSSVGRSP 160 (317)
T ss_pred CCCEEEEcCCccceeeEEE
Confidence 8999999999998888743
No 131
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=37.33 E-value=33 Score=38.72 Aligned_cols=36 Identities=31% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.+|+.|+- + + .+ | .||||.-.|++.||++++.++
T Consensus 206 A~~l~~~l~~------~---~-~~--d-~i~sSpl~Ra~qTA~~i~~~~ 241 (372)
T PRK07238 206 AAAAARYLAA------R---G-GI--D-AVVSSPLQRARDTAAAAAKAL 241 (372)
T ss_pred HHHHHHHHhc------c---C-CC--C-EEEECChHHHHHHHHHHHHhc
Confidence 8888988872 1 0 11 2 599999999999999998765
No 132
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=36.73 E-value=18 Score=41.78 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCCCEEEEecc
Q 002799 99 KVYEQLEKYGIPVPRYALVNRE 120 (879)
Q Consensus 99 ~~~qiL~~~gIP~P~t~~~~r~ 120 (879)
.+.++|++.|||+|++.++...
T Consensus 7 eak~lL~~yGIpvp~~~~~~~~ 28 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYSP 28 (392)
T ss_pred HHHHHHHHcCCCCCCceEECCH
Confidence 4678999999999999999653
No 133
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=34.40 E-value=28 Score=35.53 Aligned_cols=38 Identities=26% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHhc-CCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhhhc
Q 002799 494 VNEIAYWWG-SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLD 544 (879)
Q Consensus 494 Ae~LG~~fR-Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~ 544 (879)
|+.||+.++ . ++ ..-.||||+-.|++-||++.|+.+-.
T Consensus 37 A~~l~~~l~~~-----~~--------~~~~i~sS~l~Ra~~TA~~~a~~~~~ 75 (208)
T COG0406 37 AEALAERLAAR-----DI--------GFDAIYSSPLKRAQQTAEPLAEELGL 75 (208)
T ss_pred HHHHHHHHhhc-----CC--------CCCEEEECchHHHHHHHHHHHHhcCC
Confidence 888888887 1 00 12248999999999999999987643
No 134
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=33.87 E-value=48 Score=33.36 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.+|+.|+- .|+ .=| .||||.=.|++.||++++..+
T Consensus 31 a~~~~~~l~~----~~~-------~~d-~i~sSp~~Ra~qTa~~l~~~~ 67 (159)
T PRK10848 31 SRLMANWLKG----QKV-------DIE-RVLVSPYLRAEQTLEVVGECL 67 (159)
T ss_pred HHHHHHHHHh----CCC-------CCC-EEEECCHHHHHHHHHHHHHHh
Confidence 7888888771 011 112 499999999999999998875
No 135
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=33.41 E-value=33 Score=40.00 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.0
Q ss_pred CccceEEEEEEEEcCCCCccc
Q 002799 352 QSEELRCVIAVMRHGDRTPKQ 372 (879)
Q Consensus 352 ~~~eLr~vvaViRHgDRTPKQ 372 (879)
..|.|.=||.|.|||.|.|-+
T Consensus 27 ~~~~L~~vvilsRHg~R~P~~ 47 (413)
T PRK10173 27 EGYQLQQVLMMSRHNLRAPLA 47 (413)
T ss_pred ccCeEEEEEEEeecccCCCCC
Confidence 568999999999999999964
No 136
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=33.10 E-value=31 Score=33.38 Aligned_cols=38 Identities=29% Similarity=0.175 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.+|+.|+-. + .-.=-.||||.-.|++-||+++++.+
T Consensus 34 a~~~a~~l~~~----~-------~~~~~~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 34 AEALGELLASL----G-------RLRFDVIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred HHHHHHHHHhc----c-------CCCCCEEEeCchHHHHHHHHHHHHhc
Confidence 88999888721 0 01112499999999999999998755
No 137
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.97 E-value=9.6 Score=45.56 Aligned_cols=72 Identities=19% Similarity=0.433 Sum_probs=0.0
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 002799 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (879)
Q Consensus 111 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 190 (879)
+|++++. |....+.-++.+-+..++ +|+||-..- .|.|.+ .-+|.+
T Consensus 283 mPrtyil--------P~d~e~lrk~w~~nasr~---wIVkppasa-----------Rg~gIr-v~~kw~----------- 328 (662)
T KOG2156|consen 283 MPRTYIL--------PADREELRKYWEKNASRL---WIVKPPASA-----------RGIGIR-VINKWS----------- 328 (662)
T ss_pred cceeeec--------cccHHHHHHHHhhCcccc---EEecCcccc-----------cCcceE-eccchh-----------
Q ss_pred ccccCcceEEeeccCC----CC--ceeEEEEE
Q 002799 191 RVRREGSYIYEEFMPT----GG--TDVKVYTV 216 (879)
Q Consensus 191 ~~r~~gsyIyQEFI~t----~G--~DIKVytV 216 (879)
.+..+...++|+||+. +| .|+|+|++
T Consensus 329 q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~ 360 (662)
T KOG2156|consen 329 QFPKDRPLVVQKYIERPLLINGSKFDLRLYVV 360 (662)
T ss_pred hCCCcccHHHHHHhhcceeecCcceeEEEEEE
No 138
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=29.65 E-value=40 Score=33.55 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.+|+.|.- .| +.-| .||||.=.|++-||+++++.+
T Consensus 31 a~~~~~~l~~----~~-------~~~d-~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 31 SRLVAQWLKG----QG-------VEIE-RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred HHHHHHHHHh----CC-------CCCC-EEEECCcHHHHHHHHHHHHHc
Confidence 7778887761 01 1123 699999999999999999886
No 139
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=24.11 E-value=98 Score=32.05 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL 543 (879)
|+-.|+.++- .|+ +.=+|++|.-.|+|-||++++..|-
T Consensus 34 a~~~a~~L~~----~~~--------~~D~VL~Spa~Ra~QTae~v~~~~~ 71 (163)
T COG2062 34 AELVAAWLAG----QGV--------EPDLVLVSPAVRARQTAEIVAEHLG 71 (163)
T ss_pred HHHHHHHHHh----cCC--------CCCEEEeChhHHHHHHHHHHHHhhC
Confidence 8888888881 111 2334999999999999999999998
No 140
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=22.96 E-value=98 Score=33.56 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=20.0
Q ss_pred ceeEEEEEee-CCCcEEEecCCccccccchhh
Q 002799 268 AVCGFDLLRC-EGRSYVCDVNGWSFVKNSYKY 298 (879)
Q Consensus 268 ~VcGfDLLRs-~g~syV~DVNGwSFVK~n~kY 298 (879)
.+-|||+|-. +.+|+++|||.-+=...+..+
T Consensus 237 el~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~ 268 (292)
T PF03133_consen 237 ELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPV 268 (292)
T ss_dssp EEEEEEEEEBTTS-EEEEEEESS------TTT
T ss_pred ceeeeEEEecCCCeEEEeeCCCCCCcccCCHh
Confidence 5789999988 678999999988544444443
No 141
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=22.74 E-value=58 Score=34.44 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (879)
|+.+|+.+.. .+ ..=| .||||+=.|++-||++++.+
T Consensus 36 A~~l~~~L~~----~~-------~~~d-~i~sSpL~Ra~qTA~~i~~~ 71 (228)
T PRK14116 36 AKKAGRLIKE----AG-------LEFD-QAYTSVLTRAIKTLHYALEE 71 (228)
T ss_pred HHHHHHHHHh----cC-------CCCC-EEEECChHHHHHHHHHHHHh
Confidence 8888888761 01 1113 59999999999999998764
No 142
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=22.13 E-value=72 Score=38.00 Aligned_cols=30 Identities=33% Similarity=0.314 Sum_probs=26.2
Q ss_pred eEeecCCchHHHHHHHHHHhhhcccCCCCc
Q 002799 522 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (879)
Q Consensus 522 KIysSdEgRVq~TAaaFakglL~legeLtP 551 (879)
-|+++.--||..||++||-||..-.+-.-|
T Consensus 162 ~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t 191 (467)
T KOG1382|consen 162 NINTTASQRVVDSAQAFAYGLFGEDHFNIT 191 (467)
T ss_pred EeeccchHHHHHHHHHHHhhhccccccCCC
Confidence 488898889999999999999987777556
No 143
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.68 E-value=60 Score=32.04 Aligned_cols=70 Identities=11% Similarity=0.254 Sum_probs=47.8
Q ss_pred eEEEEeecCcccCChhHHHHHHHHhccCCeEEEEeCCcccccCCCccCCCcceeeccccCCCcHHHHHHHHH
Q 002799 7 ITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT 78 (879)
Q Consensus 7 ~~iGVCaM~~Ka~SkPm~~IL~rL~~~~~f~~iiF~d~~IL~e~ve~wP~~D~lIsf~s~GfpL~kai~y~~ 78 (879)
-.||+|+|+--.... |++++.+|.+.+--++.|+--=.+.+++.+.|=...+ =.||+.|-|+...++++.
T Consensus 55 dii~iSsl~~~~~~~-~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 55 HVVGVSSLAGGHLTL-VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPESAIFLL 124 (132)
T ss_pred CEEEEcCchhhhHHH-HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHHHHHHHH
Confidence 479999999655555 9999999988764455455444444554555444333 456788889988888766
No 144
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=21.55 E-value=65 Score=33.95 Aligned_cols=37 Identities=8% Similarity=-0.106 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCchhhhcccccccceEeecCCchHHHHHHHHHHhh
Q 002799 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (879)
Q Consensus 494 Ae~LG~~fRYp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakgl 542 (879)
|+.||+.|+- .+ ..-| .||||+=.|++.||+++++.+
T Consensus 36 A~~l~~~L~~----~~-------~~~d-~i~sSpL~Ra~~TA~~i~~~~ 72 (228)
T PRK14119 36 ATRAGEKVRE----NN-------IAID-VAFTSLLTRALDTTHYILTES 72 (228)
T ss_pred HHHHHHHHHh----cC-------CCCC-EEEeCccHHHHHHHHHHHHhc
Confidence 8888888761 00 1112 499999999999999998753
Done!