BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002800
(879 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 480 MTGINLSALFDNLTCLRSLDLSN--QDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAE 537
++G+NL + + L +L N G N++ +P I KL L YL ++ +
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 538 LPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLS 583
+P+ L + L T++ S+ LP + L NL + DG +S
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 482 GINLSALFDNLTCLRSLDLSNQDNGFYNVIKR-VPRGIRKLLHLRYLNLSRNSKIAELPE 540
G + S FDN + LD+S YN++ +P+ I + +L LNL N +P+
Sbjct: 618 GGHTSPTFDNNGSMMFLDMS------YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 541 SLCDLYNLETMELSWCISLKRLPQRMGQLINL 572
+ DL L ++LS R+PQ M L L
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 33/226 (14%)
Query: 352 EIEKDRLIKLWMAQGYLKVEGRDDTELIGE--EFFESLASHSLLHDFQKNEFDGRIIRCK 409
E+ D L+K+ +G LKV E GE E +L++ L D N F G I+
Sbjct: 330 ELPMDTLLKM---RG-LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 410 MHNIVHDFAQFLTKNECFNLEVNGF--EMCPLESN-ENIQHLMIKFE-TERKFPTSVYNR 465
N + + +N NGF ++ P SN + L + F P+S+ +
Sbjct: 386 CQNPKNTLQELYLQN-------NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 466 KRLRSLV----VERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKL 521
+LR L + GE + L +++L+ D F ++ +P G+
Sbjct: 439 SKLRDLKLWLNMLEGE----------IPQELMYVKTLETLILD--FNDLTGEIPSGLSNC 486
Query: 522 LHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMG 567
+L +++LS N E+P+ + L NL ++LS +P +G
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 482 GINLSALFDNLTCLRSLDLSNQDNGFYNVIKR-VPRGIRKLLHLRYLNLSRNSKIAELPE 540
G + S FDN + LD+S YN++ +P+ I + +L LNL N +P+
Sbjct: 621 GGHTSPTFDNNGSMMFLDMS------YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 541 SLCDLYNLETMELSWCISLKRLPQRMGQLINL 572
+ DL L ++LS R+PQ M L L
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 33/226 (14%)
Query: 352 EIEKDRLIKLWMAQGYLKVEGRDDTELIGE--EFFESLASHSLLHDFQKNEFDGRIIRCK 409
E+ D L+K+ +G LKV E GE E +L++ L D N F G I+
Sbjct: 333 ELPMDTLLKM---RG-LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 410 MHNIVHDFAQFLTKNECFNLEVNGF--EMCPLESN-ENIQHLMIKFE-TERKFPTSVYNR 465
N + + +N NGF ++ P SN + L + F P+S+ +
Sbjct: 389 CQNPKNTLQELYLQN-------NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 466 KRLRSLV----VERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKL 521
+LR L + GE + L +++L+ D F ++ +P G+
Sbjct: 442 SKLRDLKLWLNMLEGE----------IPQELMYVKTLETLILD--FNDLTGEIPSGLSNC 489
Query: 522 LHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMG 567
+L +++LS N E+P+ + L NL ++LS +P +G
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 444 NIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSAL---FDNLTCLRSLDL 500
N+Q L +++ R P S+ N + L+SL + LSAL +L L LDL
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-------LSALGPAIHHLPKLEELDL 236
Query: 501 SNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLK 560
++ P L+ L L S + LP + L LE ++L C++L
Sbjct: 237 RG-----CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Query: 561 RLPQRMGQL 569
RLP + QL
Sbjct: 292 RLPSLIAQL 300
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 487 ALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGI-RKLLHLRYLNLSRNSKIAELPESLCD- 544
+FD+L L+ L L + N + +P G+ L L L+L N ++ LP ++ D
Sbjct: 58 GVFDSLINLKELYLGS------NQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDR 110
Query: 545 LYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKG-IERLTCL 595
L +L+ + + C L LP+ + +L +L HL D L +P G +RL+ L
Sbjct: 111 LVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 486 SALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCD 544
SA+FD L L+ L + N + +PRGI +L HL +L L +N ++ +P D
Sbjct: 105 SAVFDRLVHLKELFMC------CNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFD 156
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 188 RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK-MGNTRMISL-GTLS 245
R LL+LDDV ++ W LK+ +IL+TT +++V + MG ++ + +L
Sbjct: 237 RSLLILDDV----WDSW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 287
Query: 246 EEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLR 296
+E + L +++D L +I++CK PL V +IG+ LR
Sbjct: 288 KEKGLEILSLFV-NMKKAD-----LPEQAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 188 RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK-MGNTRMISLGT-LS 245
R LL+LDDV W + LK+ +IL+TT +++V + MG ++ + + L
Sbjct: 244 RSLLILDDV-------WDP--WVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLG 294
Query: 246 EEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLR-FKRNIGEW 304
E + L + + ++L +I++CK PL V +IG+ LR F +
Sbjct: 295 REKGLEILSLFV------NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYY 348
Query: 305 LNVLKSK 311
L L++K
Sbjct: 349 LRQLQNK 355
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 695 GNTLSSIFIMSLAKLRSMSLDRCINLEQLPRLGELPSLESLTVRNMRRLEKVGNEFLGI- 753
G ++S+++ ++LA+ + R + +Q L LP L T + + G FLG+
Sbjct: 173 GGSISNMYAVNLARYQ-----RYPDCKQR-GLRTLPPLALFTSKECHYSIQKGAAFLGLG 226
Query: 754 -DESRLLRKDE-GKVLGTDRSRSSGIEESKPSKPFV 787
D R+++ DE GK++ D R G+ E++ + PF+
Sbjct: 227 TDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFL 262
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 17/111 (15%)
Query: 188 RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK-MGNTRMISL-GTLS 245
R LL+LDDV W + LK+ +IL+TT +++V + MG ++ + +L
Sbjct: 243 RSLLILDDV-------WDS--WVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 293
Query: 246 EEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLR 296
+E + L +++D L +I++CK PL V +IG+ LR
Sbjct: 294 KEKGLEILSLFVNM-KKAD-----LPEQAHSIIKECKGSPLVVSLIGALLR 338
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 188 RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK-MGNTRMISLGT-LS 245
R LL+LDDV W + LK+ +IL+TT +++V + MG ++ + + L
Sbjct: 237 RSLLILDDV-------WDP--WVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLG 287
Query: 246 EEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLR-FKRNIGEW 304
E + L + + ++L +I++CK PL V +IG+ LR F +
Sbjct: 288 REKGLEILSLFV------NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYY 341
Query: 305 LNVLKSK 311
L L++K
Sbjct: 342 LRQLQNK 348
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 230 INKMGNTRMISLGTLSEEASWSLFC-----LVAFYWRR-SDEEFQELEHIGRQVIRKCKN 283
++ +G +S+GT+ + +SW+L C +VA WR S + +E I R+ + ++
Sbjct: 87 LDTVGQGVAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITES 146
Query: 284 LPL---AVKVIGS-HLRFKRNI 301
L L A IG+ +L F +NI
Sbjct: 147 LSLKSIAFPAIGTGNLGFPKNI 168
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 60/261 (22%)
Query: 429 LEVNGFE-MCPLESNE--NIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINL 485
L N FE +C + ++ ++ HL IK T+R +E G G +
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKR----------------LELGTGCL----- 346
Query: 486 SALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDL 545
+NL LR LDLS+ D +R L HL+ LNLS N ++ E+ +
Sbjct: 347 ----ENLENLRELDLSHDD---IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399
Query: 546 YNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSL----------------------S 583
LE ++L++ + Q Q ++L ++N SL +
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 584 YMPKG-IERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEIN 642
+ PKG I++ L+TL + V S C L + H SLK+ ++S + +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLS----FCDLSSIDQ--HAFTSLKMMNHVDLSHNRLT 513
Query: 643 KAELGKKENLLALYLSLEKDR 663
+ + +L +YL+L +
Sbjct: 514 SSSIEALSHLKGIYLNLASNH 534
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRI 143
+ S+ G+ GSGK+TL Q +DA+ HF + +
Sbjct: 525 MTSVTGVSGSGKSTLVSQAL-VDALAAHFGQPV 556
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 531 RNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLIN 571
R + A+ P + C +Y + + ++C+ R R+G+LIN
Sbjct: 72 REALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLIN 112
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 531 RNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLIN 571
R + A+ P + C +Y + + ++C+ R R+G+LIN
Sbjct: 72 REALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLIN 112
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 99 LCESSEKQTTLPIISIVGMDGSGKTTLSRQV----FDIDAVKTH---FSKRIWVSASYPE 151
LCE++ K L I+ +GSG SR+ FD+ + H F+ + + P
Sbjct: 329 LCETAAKDNKLXAITPAXREGSGXVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPI 388
Query: 152 IRIARAILESLKDGVSSDLV 171
+ I L+ D V D+
Sbjct: 389 VAIYSTFLQRAYDQVLHDVA 408
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 531 RNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLIN 571
R + A+ P + C +Y + + ++C+ R R+G+LIN
Sbjct: 73 REALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLIN 113
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 473 VERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGI-RKLLHLRYLNLSR 531
+E E ++ + A F+NL LR+L L + N +K +P G+ L +L L++S
Sbjct: 61 LELNENIVSAVEPGA-FNNLFNLRTLGLRS------NRLKLIPLGVFTGLSNLTKLDISE 113
Query: 532 NSKIAELPESLCDLYNLETMELS 554
N + L DLYNL+++E+
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVG 136
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 531 RNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLIN 571
R + A+ P + C +Y + + ++C+ R R+G+LIN
Sbjct: 71 REALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLIN 111
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 531 RNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLIN 571
R + A+ P + C +Y + + ++C+ R R+G+LIN
Sbjct: 67 REALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLIN 107
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 665 KGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLP 724
K K + A GL P+L LE+F +R T+ + L+KLR + L R +E +P
Sbjct: 68 KNLVRKIEVGAFNGL---PSLNTLELFDNRLTTVPTQAFEYLSKLRELWL-RNNPIESIP 123
Query: 725 R--LGELPSLESLTVRNMRRLEKVG 747
+PSL L + ++RLE +
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLEYIS 148
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 670 KDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR--LG 727
K + A GL P+L LE+F +R T+ + L+KLR + L R +E +P
Sbjct: 73 KIEVGAFNGL---PSLNTLELFDNRLTTVPTQAFEYLSKLRELWL-RNNPIESIPSYAFN 128
Query: 728 ELPSLESLTVRNMRRLEKV 746
+PSL L + ++RLE +
Sbjct: 129 RVPSLRRLDLGELKRLEYI 147
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 487 ALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGI-RKLLHLRYLNLSRNSKIAELPESLCD 544
+FD LT L LDL N N ++ +P G+ KL L+ L+L+ N ++ +P+ + D
Sbjct: 151 GVFDKLTNLTRLDLDN------NQLQSLPEGVFDKLTQLKQLSLNDN-QLKSVPDGVFD 202
>pdb|3UUW|A Chain A, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|B Chain B, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|C Chain C, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|D Chain D, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile
Length = 308
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 253 FCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGEWLNVLKSKI 312
F + R S + +++E + + I++ KNL + G +L K++ G W+N+LK K
Sbjct: 210 FSINTSMHRDSGTKLEQVEILSKGKIQRVKNLNVLEIEEGGNLTLKQS-GAWVNILKQKG 268
Query: 313 WE 314
+E
Sbjct: 269 FE 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,495,396
Number of Sequences: 62578
Number of extensions: 976939
Number of successful extensions: 2529
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2491
Number of HSP's gapped (non-prelim): 70
length of query: 879
length of database: 14,973,337
effective HSP length: 107
effective length of query: 772
effective length of database: 8,277,491
effective search space: 6390223052
effective search space used: 6390223052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)