Query 002800
Match_columns 879
No_of_seqs 506 out of 4825
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.2E-84 2E-88 750.7 37.4 578 1-603 67-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 7E-67 1.5E-71 645.3 48.2 728 43-860 133-946 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-44 3.1E-49 384.3 16.1 278 87-372 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 9E-25 2E-29 271.8 17.4 385 442-855 163-582 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.9E-24 4.2E-29 268.8 17.7 378 442-857 211-607 (968)
6 KOG0444 Cytoskeletal regulator 99.9 4.4E-26 9.5E-31 239.9 -5.6 338 443-858 32-376 (1255)
7 KOG4194 Membrane glycoprotein 99.9 1.4E-23 2.9E-28 220.2 3.6 361 442-851 77-446 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.6E-23 3.4E-28 220.8 -4.0 322 442-808 54-380 (1255)
9 KOG4194 Membrane glycoprotein 99.8 1.1E-21 2.3E-26 206.1 5.5 342 442-831 101-448 (873)
10 PLN03210 Resistant to P. syrin 99.8 2.3E-19 5E-24 223.2 20.2 347 442-838 588-946 (1153)
11 KOG0618 Serine/threonine phosp 99.8 4.5E-21 9.9E-26 212.4 -3.5 284 450-748 5-327 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 1.4E-21 3.1E-26 196.6 -7.5 370 442-855 67-539 (565)
13 KOG0472 Leucine-rich repeat pr 99.7 1.5E-20 3.3E-25 189.3 -11.5 262 444-741 46-308 (565)
14 KOG0618 Serine/threonine phosp 99.7 1.6E-18 3.4E-23 192.5 -3.6 101 445-556 47-147 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1.8E-14 3.9E-19 166.2 13.8 78 494-587 202-279 (788)
16 PRK04841 transcriptional regul 99.5 6.7E-12 1.4E-16 155.9 25.8 292 81-422 13-332 (903)
17 PRK15370 E3 ubiquitin-protein 99.4 2.6E-13 5.5E-18 158.0 10.8 91 494-600 179-269 (754)
18 PRK15387 E3 ubiquitin-protein 99.4 1.1E-12 2.5E-17 151.5 14.8 252 446-800 204-455 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 9.7E-13 2.1E-17 153.2 11.3 124 444-589 179-302 (754)
20 PRK00411 cdc6 cell division co 99.4 1.3E-10 2.9E-15 129.2 27.6 304 76-397 24-359 (394)
21 KOG4658 Apoptotic ATPase [Sign 99.4 2.7E-13 5.9E-18 160.2 4.9 322 463-854 520-856 (889)
22 KOG0617 Ras suppressor protein 99.3 2.7E-14 5.8E-19 127.9 -4.1 139 442-592 55-195 (264)
23 KOG0617 Ras suppressor protein 99.3 3.7E-14 8E-19 127.0 -5.4 132 462-604 29-161 (264)
24 TIGR02928 orc1/cdc6 family rep 99.3 9.5E-10 2.1E-14 121.1 27.3 304 77-397 10-351 (365)
25 TIGR03015 pepcterm_ATPase puta 99.3 2E-10 4.4E-15 120.6 20.0 181 109-295 43-242 (269)
26 KOG4237 Extracellular matrix p 99.3 2.2E-13 4.8E-18 138.0 -2.6 284 467-800 68-356 (498)
27 PF01637 Arch_ATPase: Archaeal 99.2 1E-10 2.2E-15 120.3 13.1 193 84-290 1-233 (234)
28 PRK00080 ruvB Holliday junctio 99.2 2.5E-10 5.4E-15 122.8 14.6 262 82-397 25-311 (328)
29 TIGR00635 ruvB Holliday juncti 99.2 8.3E-10 1.8E-14 118.1 17.7 276 82-396 4-289 (305)
30 PF05729 NACHT: NACHT domain 99.1 9.6E-10 2.1E-14 106.2 12.2 141 110-256 1-162 (166)
31 COG2909 MalT ATP-dependent tra 99.0 9.1E-09 2E-13 115.7 18.4 296 81-423 18-339 (894)
32 KOG4237 Extracellular matrix p 99.0 1.9E-11 4.1E-16 124.3 -4.7 139 433-581 57-199 (498)
33 PTZ00112 origin recognition co 98.9 1.6E-07 3.4E-12 106.6 23.5 213 80-295 753-986 (1164)
34 COG3899 Predicted ATPase [Gene 98.9 4.2E-08 9.2E-13 117.1 19.1 287 83-394 1-355 (849)
35 cd00116 LRR_RI Leucine-rich re 98.9 3.1E-10 6.7E-15 122.8 0.6 243 462-739 19-287 (319)
36 PRK13342 recombination factor 98.9 4.9E-08 1.1E-12 108.3 17.2 175 82-292 12-197 (413)
37 PRK06893 DNA replication initi 98.9 3E-08 6.5E-13 100.5 14.2 156 109-295 39-207 (229)
38 COG2256 MGS1 ATPase related to 98.9 1.4E-08 3.1E-13 104.8 11.6 173 78-285 26-206 (436)
39 cd00116 LRR_RI Leucine-rich re 98.8 1.1E-09 2.4E-14 118.5 1.7 256 443-739 23-316 (319)
40 PF05496 RuvB_N: Holliday junc 98.8 8.1E-08 1.7E-12 92.9 13.6 181 82-295 24-225 (233)
41 PRK14963 DNA polymerase III su 98.8 4.5E-08 9.7E-13 109.7 12.6 197 82-288 14-214 (504)
42 KOG0532 Leucine-rich repeat (L 98.7 4.8E-10 1E-14 119.4 -4.6 144 446-603 78-221 (722)
43 PF13401 AAA_22: AAA domain; P 98.7 8.8E-08 1.9E-12 88.3 10.6 114 108-226 3-125 (131)
44 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.1E-07 4.5E-12 94.9 14.1 170 87-294 22-204 (226)
45 PRK07003 DNA polymerase III su 98.7 6.2E-07 1.4E-11 101.6 18.7 195 82-291 16-221 (830)
46 KOG0532 Leucine-rich repeat (L 98.7 8.4E-10 1.8E-14 117.6 -4.0 190 469-717 78-270 (722)
47 PRK14961 DNA polymerase III su 98.7 6.4E-07 1.4E-11 97.5 17.8 192 82-288 16-217 (363)
48 PF13191 AAA_16: AAA ATPase do 98.7 5.4E-08 1.2E-12 95.8 8.2 74 83-163 1-83 (185)
49 COG3903 Predicted ATPase [Gene 98.7 5.3E-08 1.2E-12 101.5 8.2 270 108-397 13-293 (414)
50 PRK05564 DNA polymerase III su 98.7 1.1E-06 2.4E-11 93.9 18.3 180 82-291 4-190 (313)
51 PRK14949 DNA polymerase III su 98.6 8.3E-07 1.8E-11 102.7 18.0 199 82-290 16-219 (944)
52 PRK14960 DNA polymerase III su 98.6 8.8E-07 1.9E-11 99.4 17.5 192 82-289 15-217 (702)
53 COG4886 Leucine-rich repeat (L 98.6 1.7E-08 3.7E-13 112.5 4.1 183 489-725 112-295 (394)
54 PRK04195 replication factor C 98.6 3.5E-06 7.6E-11 95.6 22.3 246 82-370 14-271 (482)
55 PRK12402 replication factor C 98.6 7.5E-07 1.6E-11 97.0 16.4 194 82-289 15-224 (337)
56 KOG3207 Beta-tubulin folding c 98.6 1.6E-08 3.5E-13 104.9 1.9 235 518-855 117-365 (505)
57 PF14580 LRR_9: Leucine-rich r 98.6 3.5E-08 7.6E-13 93.7 4.1 128 464-605 17-152 (175)
58 KOG4341 F-box protein containi 98.6 2.7E-09 5.9E-14 109.9 -3.7 87 788-878 370-460 (483)
59 PLN03025 replication factor C 98.6 1.1E-06 2.3E-11 94.3 15.3 180 82-287 13-196 (319)
60 cd00009 AAA The AAA+ (ATPases 98.6 6.3E-07 1.4E-11 84.5 12.2 124 85-228 1-131 (151)
61 PRK14957 DNA polymerase III su 98.6 1.9E-06 4.1E-11 96.8 17.6 184 82-292 16-222 (546)
62 COG1474 CDC6 Cdc6-related prot 98.6 2.1E-06 4.5E-11 92.3 17.2 206 81-291 16-238 (366)
63 PRK12323 DNA polymerase III su 98.6 1.7E-06 3.8E-11 96.8 16.6 196 82-291 16-225 (700)
64 PF13173 AAA_14: AAA domain 98.5 2.8E-07 6.1E-12 84.2 8.8 119 109-249 2-127 (128)
65 PRK14956 DNA polymerase III su 98.5 1.2E-06 2.7E-11 95.6 15.0 195 82-288 18-219 (484)
66 PRK06645 DNA polymerase III su 98.5 5.3E-07 1.1E-11 100.7 12.5 190 82-288 21-226 (507)
67 PRK05896 DNA polymerase III su 98.5 1.2E-06 2.7E-11 98.3 15.1 196 82-293 16-223 (605)
68 PRK13341 recombination factor 98.5 8.6E-07 1.9E-11 103.4 14.5 167 82-285 28-211 (725)
69 KOG2028 ATPase related to the 98.5 2.2E-06 4.7E-11 87.0 14.4 155 108-285 161-330 (554)
70 COG4886 Leucine-rich repeat (L 98.5 6.5E-08 1.4E-12 107.8 4.2 193 496-742 96-289 (394)
71 PRK00440 rfc replication facto 98.5 3.1E-06 6.7E-11 91.4 17.0 179 82-288 17-200 (319)
72 PRK09112 DNA polymerase III su 98.5 3.7E-06 8.1E-11 90.1 17.2 197 82-292 23-241 (351)
73 TIGR02903 spore_lon_C ATP-depe 98.5 1.5E-06 3.2E-11 100.7 15.0 201 82-294 154-398 (615)
74 PRK07994 DNA polymerase III su 98.5 3E-06 6.6E-11 96.7 17.2 194 82-291 16-220 (647)
75 PRK14962 DNA polymerase III su 98.5 2.1E-06 4.6E-11 95.6 15.6 201 82-309 14-240 (472)
76 PRK08084 DNA replication initi 98.5 3.2E-06 7E-11 86.0 15.6 153 109-292 45-210 (235)
77 PRK08691 DNA polymerase III su 98.5 2.8E-06 6.1E-11 96.4 16.2 193 82-289 16-218 (709)
78 PRK08727 hypothetical protein; 98.5 2.6E-06 5.5E-11 86.6 14.5 148 110-288 42-201 (233)
79 PTZ00202 tuzin; Provisional 98.5 7.2E-06 1.6E-10 86.8 17.5 169 78-256 258-433 (550)
80 KOG1259 Nischarin, modulator o 98.4 2.2E-08 4.8E-13 98.4 -1.3 130 442-585 283-414 (490)
81 KOG3207 Beta-tubulin folding c 98.4 5.8E-08 1.3E-12 100.8 1.5 213 442-697 120-340 (505)
82 PF14580 LRR_9: Leucine-rich r 98.4 2.4E-07 5.1E-12 88.1 5.6 123 442-578 18-148 (175)
83 TIGR02397 dnaX_nterm DNA polym 98.4 5.8E-06 1.3E-10 90.7 17.5 183 82-292 14-219 (355)
84 PRK07471 DNA polymerase III su 98.4 5.7E-06 1.2E-10 89.2 16.8 196 82-292 19-239 (365)
85 TIGR01242 26Sp45 26S proteasom 98.4 9.3E-07 2E-11 96.6 10.5 179 81-285 121-328 (364)
86 TIGR00678 holB DNA polymerase 98.4 1.1E-05 2.4E-10 79.4 16.8 91 186-287 95-187 (188)
87 PRK14964 DNA polymerase III su 98.4 5.9E-06 1.3E-10 91.6 16.2 180 82-288 13-214 (491)
88 PRK05642 DNA replication initi 98.4 6.4E-06 1.4E-10 83.7 15.1 156 109-295 45-212 (234)
89 PRK14955 DNA polymerase III su 98.4 4.8E-06 1E-10 91.8 15.2 197 82-288 16-225 (397)
90 PRK08903 DnaA regulatory inact 98.4 6.7E-06 1.4E-10 83.7 14.9 153 108-295 41-203 (227)
91 PRK14969 DNA polymerase III su 98.4 9.2E-06 2E-10 92.3 17.2 183 82-291 16-221 (527)
92 PRK14951 DNA polymerase III su 98.4 8.6E-06 1.9E-10 92.9 16.7 196 82-290 16-224 (618)
93 PRK07940 DNA polymerase III su 98.4 9E-06 2E-10 88.4 15.9 184 82-291 5-213 (394)
94 PRK14958 DNA polymerase III su 98.3 9.5E-06 2.1E-10 91.5 16.2 181 82-289 16-218 (509)
95 PRK09087 hypothetical protein; 98.3 8.6E-06 1.9E-10 82.0 14.0 141 109-291 44-195 (226)
96 COG2255 RuvB Holliday junction 98.3 2.1E-05 4.6E-10 77.9 15.6 175 82-289 26-221 (332)
97 PRK09111 DNA polymerase III su 98.3 1.5E-05 3.2E-10 91.3 16.9 193 82-291 24-233 (598)
98 cd01128 rho_factor Transcripti 98.3 1.2E-06 2.5E-11 89.0 7.2 89 109-198 16-114 (249)
99 PRK14959 DNA polymerase III su 98.3 1.5E-05 3.3E-10 90.2 16.7 199 82-295 16-225 (624)
100 KOG0989 Replication factor C, 98.3 1E-05 2.2E-10 80.9 13.3 181 82-284 36-223 (346)
101 PRK14087 dnaA chromosomal repl 98.3 2.2E-05 4.8E-10 87.4 17.8 169 109-295 141-323 (450)
102 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.6E-12 93.3 -0.1 127 464-604 282-410 (490)
103 PF00308 Bac_DnaA: Bacterial d 98.3 2.1E-05 4.5E-10 78.9 14.6 182 84-290 11-207 (219)
104 PLN03150 hypothetical protein; 98.2 1.5E-06 3.2E-11 101.5 6.5 93 494-591 419-512 (623)
105 PRK07133 DNA polymerase III su 98.2 4.3E-05 9.3E-10 88.0 17.9 193 82-291 18-220 (725)
106 PRK03992 proteasome-activating 98.2 7.2E-06 1.6E-10 90.0 11.3 161 81-261 130-319 (389)
107 PF14516 AAA_35: AAA-like doma 98.2 0.00015 3.3E-09 77.8 21.1 201 80-298 9-246 (331)
108 PRK14952 DNA polymerase III su 98.2 4.7E-05 1E-09 86.7 17.9 197 82-293 13-222 (584)
109 PRK14970 DNA polymerase III su 98.2 4.8E-05 1E-09 83.6 17.6 181 82-288 17-206 (367)
110 KOG2227 Pre-initiation complex 98.2 3E-05 6.4E-10 82.1 14.7 215 78-295 146-376 (529)
111 PLN03150 hypothetical protein; 98.2 3.8E-06 8.3E-11 98.1 9.2 106 467-581 419-526 (623)
112 PRK06305 DNA polymerase III su 98.2 4.3E-05 9.3E-10 85.2 17.0 194 82-291 17-223 (451)
113 PRK14950 DNA polymerase III su 98.2 3.9E-05 8.5E-10 88.8 17.3 196 82-291 16-221 (585)
114 PRK14954 DNA polymerase III su 98.2 3.4E-05 7.4E-10 88.4 16.2 199 82-290 16-228 (620)
115 PRK07764 DNA polymerase III su 98.2 4.3E-05 9.3E-10 90.6 17.2 192 82-288 15-218 (824)
116 PRK14953 DNA polymerase III su 98.2 6.3E-05 1.4E-09 84.4 17.6 195 82-291 16-220 (486)
117 PRK08451 DNA polymerase III su 98.2 8E-05 1.7E-09 83.5 17.9 193 82-291 14-218 (535)
118 PRK14948 DNA polymerase III su 98.1 6.9E-05 1.5E-09 86.5 17.5 197 82-291 16-222 (620)
119 PF13855 LRR_8: Leucine rich r 98.1 2.7E-06 5.8E-11 66.1 3.9 57 523-581 2-60 (61)
120 PF05621 TniB: Bacterial TniB 98.1 0.0001 2.2E-09 75.4 16.1 201 81-288 33-258 (302)
121 PRK14971 DNA polymerase III su 98.1 5.3E-05 1.1E-09 87.5 15.9 179 82-288 17-219 (614)
122 PRK09376 rho transcription ter 98.1 7.6E-06 1.7E-10 86.4 7.8 100 92-198 157-267 (416)
123 PHA02544 44 clamp loader, smal 98.1 3.9E-05 8.5E-10 82.6 12.9 148 82-255 21-171 (316)
124 TIGR02880 cbbX_cfxQ probable R 98.0 0.00015 3.2E-09 75.9 16.7 162 83-259 23-210 (284)
125 PRK07399 DNA polymerase III su 98.0 0.00017 3.6E-09 76.4 17.0 196 82-291 4-221 (314)
126 TIGR02881 spore_V_K stage V sp 98.0 8.9E-05 1.9E-09 77.0 14.4 162 83-259 7-193 (261)
127 PRK06647 DNA polymerase III su 98.0 0.00011 2.5E-09 83.7 16.1 191 82-290 16-219 (563)
128 PF13855 LRR_8: Leucine rich r 98.0 5.1E-06 1.1E-10 64.5 3.8 58 493-557 1-60 (61)
129 PRK06620 hypothetical protein; 98.0 6E-05 1.3E-09 75.2 12.3 133 110-286 45-184 (214)
130 CHL00181 cbbX CbbX; Provisiona 98.0 0.00028 6E-09 73.8 17.6 162 83-259 24-211 (287)
131 TIGR02639 ClpA ATP-dependent C 98.0 6.8E-05 1.5E-09 89.5 14.7 154 82-257 182-358 (731)
132 TIGR03345 VI_ClpV1 type VI sec 98.0 6.9E-05 1.5E-09 90.1 14.5 153 82-257 187-363 (852)
133 PRK05563 DNA polymerase III su 98.0 0.00024 5.2E-09 81.5 18.0 192 82-288 16-217 (559)
134 PRK12422 chromosomal replicati 98.0 0.00015 3.3E-09 80.5 15.7 136 109-261 141-288 (445)
135 KOG1909 Ran GTPase-activating 98.0 7.3E-07 1.6E-11 90.4 -2.5 224 486-741 23-281 (382)
136 TIGR00362 DnaA chromosomal rep 98.0 0.00018 3.9E-09 80.1 16.1 158 109-288 136-307 (405)
137 COG3267 ExeA Type II secretory 97.9 0.00051 1.1E-08 67.6 16.8 181 108-294 50-248 (269)
138 PRK14088 dnaA chromosomal repl 97.9 0.00028 6.1E-09 78.6 17.3 158 110-288 131-302 (440)
139 PTZ00361 26 proteosome regulat 97.9 5.6E-05 1.2E-09 83.0 11.5 160 82-260 183-370 (438)
140 TIGR00767 rho transcription te 97.9 1.9E-05 4.2E-10 83.9 7.5 89 109-198 168-266 (415)
141 PF00004 AAA: ATPase family as 97.9 6.5E-05 1.4E-09 69.1 10.3 96 112-226 1-111 (132)
142 PRK14965 DNA polymerase III su 97.9 0.00017 3.8E-09 83.1 15.5 195 82-291 16-221 (576)
143 PRK11331 5-methylcytosine-spec 97.9 3.6E-05 7.8E-10 83.3 9.2 118 82-212 175-298 (459)
144 PRK00149 dnaA chromosomal repl 97.9 0.0002 4.4E-09 80.7 15.7 158 109-288 148-319 (450)
145 KOG1909 Ran GTPase-activating 97.9 1E-06 2.2E-11 89.3 -2.6 243 460-741 24-309 (382)
146 KOG2543 Origin recognition com 97.9 0.0019 4.1E-08 67.1 20.5 166 81-256 5-192 (438)
147 KOG4341 F-box protein containi 97.9 5.7E-07 1.2E-11 93.1 -4.8 305 466-850 138-458 (483)
148 PTZ00454 26S protease regulato 97.9 0.00015 3.3E-09 79.1 13.4 159 82-259 145-331 (398)
149 PRK14086 dnaA chromosomal repl 97.9 0.00047 1E-08 78.0 17.4 154 110-285 315-482 (617)
150 CHL00095 clpC Clp protease ATP 97.9 0.00013 2.8E-09 88.2 13.9 153 82-256 179-353 (821)
151 PRK05707 DNA polymerase III su 97.8 0.00034 7.4E-09 74.5 15.2 160 109-291 22-203 (328)
152 TIGR03689 pup_AAA proteasome A 97.8 0.00021 4.6E-09 79.7 13.4 166 82-258 182-379 (512)
153 KOG0531 Protein phosphatase 1, 97.8 2.9E-06 6.3E-11 94.7 -1.2 102 489-600 91-193 (414)
154 PRK11034 clpA ATP-dependent Cl 97.8 0.00017 3.6E-09 85.0 13.2 156 82-257 186-362 (758)
155 KOG2120 SCF ubiquitin ligase, 97.8 4.3E-07 9.2E-12 89.7 -7.0 157 547-742 186-350 (419)
156 KOG2120 SCF ubiquitin ligase, 97.8 4.5E-07 9.7E-12 89.5 -7.0 163 642-855 202-374 (419)
157 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.5E-10 55.4 3.8 33 523-556 2-34 (44)
158 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00025 5.4E-09 86.1 14.4 155 82-257 173-349 (852)
159 COG0593 DnaA ATPase involved i 97.8 0.00063 1.4E-08 73.1 15.3 139 108-262 112-262 (408)
160 PRK08116 hypothetical protein; 97.7 8.2E-05 1.8E-09 77.0 8.1 103 110-226 115-220 (268)
161 KOG0531 Protein phosphatase 1, 97.7 6.4E-06 1.4E-10 92.0 -0.7 106 490-605 69-174 (414)
162 TIGR00602 rad24 checkpoint pro 97.7 0.00029 6.3E-09 80.8 12.4 50 81-131 83-132 (637)
163 smart00382 AAA ATPases associa 97.7 0.00029 6.3E-09 65.5 10.5 86 110-199 3-90 (148)
164 PRK10865 protein disaggregatio 97.7 0.00032 7E-09 84.7 13.0 153 82-257 178-354 (857)
165 PRK08769 DNA polymerase III su 97.7 0.00097 2.1E-08 70.3 15.0 175 89-292 11-209 (319)
166 PRK15386 type III secretion pr 97.7 0.00011 2.5E-09 78.6 7.8 73 646-738 48-120 (426)
167 PF12799 LRR_4: Leucine Rich r 97.6 4.9E-05 1.1E-09 53.9 3.2 41 493-540 1-41 (44)
168 PRK10536 hypothetical protein; 97.6 0.00046 1E-08 69.2 11.2 135 82-227 55-213 (262)
169 TIGR02639 ClpA ATP-dependent C 97.6 0.00077 1.7E-08 80.6 15.3 122 81-214 453-580 (731)
170 CHL00176 ftsH cell division pr 97.6 0.00082 1.8E-08 77.8 14.8 177 81-283 182-386 (638)
171 PRK08058 DNA polymerase III su 97.6 0.00081 1.7E-08 72.2 13.4 164 83-256 6-181 (329)
172 PRK13531 regulatory ATPase Rav 97.6 0.0003 6.5E-09 77.0 10.1 150 83-256 21-193 (498)
173 COG0542 clpA ATP-binding subun 97.6 0.00026 5.7E-09 81.5 9.7 119 82-214 491-620 (786)
174 PRK15386 type III secretion pr 97.6 9.9E-05 2.1E-09 79.0 5.8 27 571-599 157-183 (426)
175 PRK06871 DNA polymerase III su 97.6 0.00055 1.2E-08 72.3 11.3 178 90-288 10-200 (325)
176 PRK06090 DNA polymerase III su 97.6 0.0055 1.2E-07 64.6 18.7 171 89-291 10-201 (319)
177 PF13177 DNA_pol3_delta2: DNA 97.6 0.0018 4E-08 61.5 13.9 137 86-245 1-162 (162)
178 KOG1514 Origin recognition com 97.6 0.0025 5.4E-08 71.3 16.5 205 81-293 395-623 (767)
179 KOG1859 Leucine-rich repeat pr 97.5 3E-06 6.5E-11 93.5 -6.0 105 488-603 182-289 (1096)
180 PRK10865 protein disaggregatio 97.5 0.0012 2.5E-08 80.0 15.2 134 82-226 568-720 (857)
181 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00032 6.9E-09 84.4 10.1 135 82-226 566-718 (852)
182 KOG2982 Uncharacterized conser 97.5 4.1E-05 8.9E-10 76.0 2.0 202 490-739 68-288 (418)
183 KOG0991 Replication factor C, 97.5 0.0017 3.6E-08 62.5 12.3 102 82-210 27-136 (333)
184 TIGR01241 FtsH_fam ATP-depende 97.5 0.001 2.3E-08 75.9 13.3 208 81-313 54-297 (495)
185 KOG3665 ZYG-1-like serine/thre 97.5 5.4E-05 1.2E-09 88.2 2.8 131 442-583 121-263 (699)
186 COG1222 RPT1 ATP-dependent 26S 97.5 0.0031 6.8E-08 65.0 14.7 203 83-311 152-392 (406)
187 PF05673 DUF815: Protein of un 97.4 0.0046 9.9E-08 61.4 15.2 123 78-226 23-149 (249)
188 COG1223 Predicted ATPase (AAA+ 97.4 0.0044 9.5E-08 60.8 14.3 180 79-284 118-318 (368)
189 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00076 1.6E-08 81.9 11.4 134 82-226 565-717 (852)
190 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0039 8.5E-08 64.6 15.1 70 187-256 105-197 (262)
191 PRK12377 putative replication 97.4 0.00089 1.9E-08 68.0 9.7 101 109-225 101-204 (248)
192 PF10443 RNA12: RNA12 protein; 97.4 0.015 3.2E-07 62.5 18.8 212 87-310 1-298 (431)
193 PRK07993 DNA polymerase III su 97.3 0.0062 1.4E-07 65.1 16.1 183 89-291 9-204 (334)
194 KOG0741 AAA+-type ATPase [Post 97.3 0.0091 2E-07 64.5 16.8 150 107-281 536-704 (744)
195 PRK08181 transposase; Validate 97.3 0.00056 1.2E-08 70.3 7.8 99 111-226 108-208 (269)
196 PF02562 PhoH: PhoH-like prote 97.3 0.00083 1.8E-08 65.5 8.3 130 85-227 3-156 (205)
197 COG0466 Lon ATP-dependent Lon 97.3 0.001 2.3E-08 74.6 9.9 162 81-257 322-508 (782)
198 PRK10787 DNA-binding ATP-depen 97.3 0.0013 2.7E-08 78.4 11.4 164 81-257 321-506 (784)
199 PRK08118 topology modulation p 97.3 0.00015 3.3E-09 69.3 2.8 34 111-144 3-37 (167)
200 TIGR01243 CDC48 AAA family ATP 97.3 0.0036 7.8E-08 75.2 15.1 180 81-285 452-657 (733)
201 KOG4579 Leucine-rich repeat (L 97.3 1.9E-05 4.1E-10 69.2 -3.1 99 493-599 27-129 (177)
202 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0033 7.1E-08 70.5 13.6 160 82-260 228-408 (489)
203 PF00158 Sigma54_activat: Sigm 97.3 0.0013 2.8E-08 62.8 8.9 128 84-226 1-143 (168)
204 PRK07952 DNA replication prote 97.3 0.0014 3E-08 66.4 9.4 103 109-226 99-204 (244)
205 PRK06526 transposase; Provisio 97.2 0.00043 9.3E-09 70.8 5.8 99 110-226 99-200 (254)
206 PF01695 IstB_IS21: IstB-like 97.2 0.00029 6.2E-09 68.1 4.2 99 110-226 48-149 (178)
207 COG2812 DnaX DNA polymerase II 97.2 0.0012 2.7E-08 73.2 9.4 187 82-285 16-214 (515)
208 PRK09183 transposase/IS protei 97.2 0.00083 1.8E-08 69.2 7.6 100 110-226 103-205 (259)
209 PRK06964 DNA polymerase III su 97.2 0.0063 1.4E-07 64.9 14.2 94 186-292 131-226 (342)
210 PF04665 Pox_A32: Poxvirus A32 97.2 0.00063 1.4E-08 68.0 6.3 35 111-147 15-49 (241)
211 COG5238 RNA1 Ran GTPase-activa 97.2 4.9E-05 1.1E-09 74.5 -1.5 258 489-838 26-318 (388)
212 PRK08939 primosomal protein Dn 97.2 0.0018 3.9E-08 68.3 9.9 121 86-225 135-259 (306)
213 CHL00095 clpC Clp protease ATP 97.2 0.0019 4.2E-08 78.2 11.1 136 82-226 509-661 (821)
214 TIGR02902 spore_lonB ATP-depen 97.1 0.0026 5.7E-08 72.8 11.5 169 82-259 65-278 (531)
215 PRK04296 thymidine kinase; Pro 97.1 0.0011 2.5E-08 64.9 7.4 114 110-228 3-117 (190)
216 TIGR00763 lon ATP-dependent pr 97.1 0.0025 5.5E-08 76.7 11.8 163 82-257 320-505 (775)
217 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0053 1.2E-07 67.5 12.8 155 110-285 546-718 (802)
218 smart00763 AAA_PrkA PrkA AAA d 97.1 0.0004 8.6E-09 73.3 4.3 50 83-132 52-101 (361)
219 PRK06921 hypothetical protein; 97.1 0.0013 2.8E-08 68.0 7.6 37 109-147 117-154 (266)
220 TIGR01243 CDC48 AAA family ATP 97.1 0.0085 1.8E-07 72.0 15.7 181 81-286 177-382 (733)
221 PLN00020 ribulose bisphosphate 97.1 0.018 3.8E-07 60.7 15.5 26 107-132 146-171 (413)
222 PF14532 Sigma54_activ_2: Sigm 97.1 0.0013 2.8E-08 60.8 6.5 107 85-226 1-109 (138)
223 KOG0733 Nuclear AAA ATPase (VC 97.1 0.011 2.4E-07 65.1 14.1 192 80-296 188-411 (802)
224 PRK07261 topology modulation p 97.0 0.0015 3.2E-08 62.8 7.0 66 111-198 2-68 (171)
225 COG0470 HolB ATPase involved i 97.0 0.0052 1.1E-07 66.5 12.0 145 83-248 2-172 (325)
226 PRK11034 clpA ATP-dependent Cl 97.0 0.0034 7.3E-08 74.2 11.1 122 82-214 458-584 (758)
227 PRK06835 DNA replication prote 97.0 0.0011 2.5E-08 70.3 6.4 102 110-226 184-288 (329)
228 KOG0730 AAA+-type ATPase [Post 97.0 0.0088 1.9E-07 66.7 13.2 165 78-262 430-620 (693)
229 KOG0744 AAA+-type ATPase [Post 97.0 0.0081 1.8E-07 60.9 11.8 81 109-198 177-261 (423)
230 KOG1859 Leucine-rich repeat pr 97.0 2.6E-05 5.6E-10 86.4 -6.3 130 442-586 163-295 (1096)
231 KOG3665 ZYG-1-like serine/thre 97.0 0.00024 5.2E-09 83.0 1.1 83 522-605 122-207 (699)
232 COG1484 DnaC DNA replication p 97.0 0.0031 6.6E-08 64.7 9.0 79 111-205 107-185 (254)
233 PRK09361 radB DNA repair and r 97.0 0.0035 7.7E-08 63.6 9.4 39 108-148 22-60 (225)
234 PF07724 AAA_2: AAA domain (Cd 97.0 0.0011 2.4E-08 63.4 5.3 90 109-213 3-105 (171)
235 PHA00729 NTP-binding motif con 97.0 0.0043 9.3E-08 61.3 9.4 23 109-131 17-39 (226)
236 COG1373 Predicted ATPase (AAA+ 97.0 0.037 8E-07 60.9 17.8 115 111-252 39-162 (398)
237 PRK12608 transcription termina 96.9 0.0035 7.6E-08 66.6 9.2 101 90-198 119-231 (380)
238 KOG4579 Leucine-rich repeat (L 96.9 0.00021 4.6E-09 62.8 -0.3 89 490-586 50-139 (177)
239 PRK11889 flhF flagellar biosyn 96.9 0.013 2.8E-07 62.6 12.7 104 108-214 240-349 (436)
240 PRK05800 cobU adenosylcobinami 96.9 0.0037 8E-08 59.8 8.0 151 111-288 3-169 (170)
241 COG0542 clpA ATP-binding subun 96.9 0.0038 8.2E-08 72.3 9.3 155 82-257 170-346 (786)
242 KOG1051 Chaperone HSP104 and r 96.9 0.0067 1.5E-07 71.3 11.4 120 82-214 562-687 (898)
243 PRK08699 DNA polymerase III su 96.8 0.012 2.6E-07 62.7 12.5 70 187-256 113-184 (325)
244 PRK05541 adenylylsulfate kinas 96.8 0.0032 6.9E-08 61.1 7.3 37 108-146 6-42 (176)
245 PF07728 AAA_5: AAA domain (dy 96.8 0.00054 1.2E-08 63.6 1.7 88 112-213 2-91 (139)
246 PRK06067 flagellar accessory p 96.8 0.011 2.5E-07 60.2 11.6 88 107-197 23-130 (234)
247 KOG0735 AAA+-type ATPase [Post 96.8 0.029 6.4E-07 63.0 15.1 133 108-256 430-585 (952)
248 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0096 2.1E-07 55.6 9.5 116 110-228 3-139 (159)
249 TIGR01817 nifA Nif-specific re 96.7 0.0097 2.1E-07 68.9 11.7 133 80-226 194-340 (534)
250 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.006 1.3E-07 62.4 9.1 54 108-162 18-77 (235)
251 PRK04132 replication factor C 96.7 0.027 5.9E-07 66.8 15.4 152 117-289 574-729 (846)
252 PHA02244 ATPase-like protein 96.7 0.012 2.6E-07 62.4 11.1 98 112-226 122-230 (383)
253 KOG0728 26S proteasome regulat 96.7 0.086 1.9E-06 51.5 15.8 190 83-295 147-367 (404)
254 COG0464 SpoVK ATPases of the A 96.7 0.021 4.6E-07 65.5 14.2 161 82-261 242-427 (494)
255 PRK11608 pspF phage shock prot 96.7 0.0065 1.4E-07 65.1 9.4 131 82-226 6-150 (326)
256 KOG0731 AAA+-type ATPase conta 96.7 0.023 5E-07 65.5 13.9 183 81-288 310-521 (774)
257 PF13671 AAA_33: AAA domain; P 96.7 0.0059 1.3E-07 56.9 7.9 21 111-131 1-21 (143)
258 cd01394 radB RadB. The archaea 96.7 0.0098 2.1E-07 60.0 9.9 39 108-148 18-56 (218)
259 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0046 1E-07 63.1 7.4 87 110-198 70-174 (274)
260 cd03228 ABCC_MRP_Like The MRP 96.7 0.018 3.9E-07 55.5 11.4 119 109-232 28-160 (171)
261 PF00448 SRP54: SRP54-type pro 96.7 0.0075 1.6E-07 59.2 8.7 86 110-197 2-93 (196)
262 PRK15429 formate hydrogenlyase 96.7 0.011 2.3E-07 70.6 11.6 133 82-226 376-520 (686)
263 TIGR01650 PD_CobS cobaltochela 96.7 0.032 6.9E-07 58.6 13.5 163 76-257 40-233 (327)
264 PF13604 AAA_30: AAA domain; P 96.7 0.0042 9.1E-08 61.2 6.8 108 109-227 18-131 (196)
265 PF13207 AAA_17: AAA domain; P 96.6 0.0013 2.9E-08 59.3 3.0 21 111-131 1-21 (121)
266 TIGR02237 recomb_radB DNA repa 96.6 0.0066 1.4E-07 60.8 8.2 44 108-153 11-55 (209)
267 cd01393 recA_like RecA is a b 96.6 0.0092 2E-07 60.6 9.3 88 108-198 18-125 (226)
268 cd03214 ABC_Iron-Siderophores_ 96.6 0.02 4.4E-07 55.7 11.2 119 109-230 25-161 (180)
269 PF07693 KAP_NTPase: KAP famil 96.6 0.11 2.4E-06 56.1 18.1 43 87-132 1-43 (325)
270 cd01120 RecA-like_NTPases RecA 96.6 0.012 2.7E-07 56.0 9.6 36 111-148 1-36 (165)
271 KOG2228 Origin recognition com 96.6 0.022 4.8E-07 58.4 11.3 171 82-257 24-219 (408)
272 cd00544 CobU Adenosylcobinamid 96.6 0.017 3.6E-07 55.1 9.9 147 112-286 2-167 (169)
273 TIGR02974 phageshock_pspF psp 96.5 0.01 2.2E-07 63.7 9.2 129 84-226 1-143 (329)
274 COG2607 Predicted ATPase (AAA+ 96.5 0.021 4.6E-07 55.7 10.2 121 80-226 58-182 (287)
275 KOG0734 AAA+-type ATPase conta 96.5 0.011 2.4E-07 63.9 9.2 53 80-132 302-360 (752)
276 cd03216 ABC_Carb_Monos_I This 96.5 0.013 2.8E-07 56.0 8.8 115 109-231 26-146 (163)
277 KOG1644 U2-associated snRNP A' 96.5 0.0037 7.9E-08 59.2 4.7 100 445-555 44-149 (233)
278 KOG2035 Replication factor C, 96.5 0.02 4.3E-07 57.0 9.9 207 83-313 14-260 (351)
279 cd03247 ABCC_cytochrome_bd The 96.5 0.021 4.6E-07 55.4 10.3 119 109-231 28-161 (178)
280 PRK13695 putative NTPase; Prov 96.5 0.0049 1.1E-07 59.7 5.8 22 111-132 2-23 (174)
281 cd01122 GP4d_helicase GP4d_hel 96.4 0.028 6.1E-07 58.9 12.0 54 108-163 29-83 (271)
282 PRK08233 hypothetical protein; 96.4 0.0078 1.7E-07 58.8 7.2 23 109-131 3-25 (182)
283 PRK00771 signal recognition pa 96.4 0.033 7.1E-07 61.6 12.5 54 108-163 94-150 (437)
284 cd03246 ABCC_Protease_Secretio 96.4 0.017 3.8E-07 55.7 9.3 118 109-231 28-160 (173)
285 PRK05022 anaerobic nitric oxid 96.4 0.015 3.3E-07 66.6 10.3 135 80-226 185-331 (509)
286 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.047 1E-06 50.8 11.7 105 109-231 26-131 (144)
287 PRK15455 PrkA family serine pr 96.4 0.0024 5.2E-08 71.0 3.3 49 83-131 77-125 (644)
288 cd01124 KaiC KaiC is a circadi 96.4 0.019 4E-07 56.4 9.4 45 112-158 2-46 (187)
289 KOG2982 Uncharacterized conser 96.3 0.00042 9.1E-09 69.0 -2.4 186 520-746 69-265 (418)
290 COG0563 Adk Adenylate kinase a 96.3 0.013 2.9E-07 56.3 7.9 98 111-213 2-102 (178)
291 PRK10733 hflB ATP-dependent me 96.3 0.06 1.3E-06 63.4 14.9 157 83-259 153-337 (644)
292 COG1618 Predicted nucleotide k 96.3 0.0033 7.1E-08 57.3 3.3 34 110-145 6-40 (179)
293 KOG1644 U2-associated snRNP A' 96.3 0.0056 1.2E-07 58.0 4.9 80 651-741 43-124 (233)
294 PF08423 Rad51: Rad51; InterP 96.3 0.017 3.7E-07 59.4 8.9 55 108-163 37-97 (256)
295 PRK06696 uridine kinase; Valid 96.3 0.0046 1E-07 62.5 4.7 43 86-131 2-44 (223)
296 COG1875 NYN ribonuclease and A 96.3 0.016 3.5E-07 60.0 8.4 130 85-226 227-387 (436)
297 PRK14974 cell division protein 96.2 0.043 9.3E-07 58.4 11.7 112 108-222 139-259 (336)
298 COG0396 sufC Cysteine desulfur 96.2 0.063 1.4E-06 52.3 11.6 64 177-240 152-217 (251)
299 KOG1969 DNA replication checkp 96.2 0.017 3.6E-07 65.2 8.7 87 105-212 322-412 (877)
300 cd03238 ABC_UvrA The excision 96.2 0.038 8.2E-07 53.2 10.3 123 109-241 21-161 (176)
301 PRK05703 flhF flagellar biosyn 96.2 0.061 1.3E-06 59.6 13.1 101 109-212 221-326 (424)
302 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.032 6.9E-07 57.0 10.3 50 108-159 20-69 (237)
303 cd03115 SRP The signal recogni 96.2 0.043 9.3E-07 53.0 10.7 21 111-131 2-22 (173)
304 PRK00625 shikimate kinase; Pro 96.2 0.061 1.3E-06 51.6 11.4 21 111-131 2-22 (173)
305 PRK12723 flagellar biosynthesi 96.2 0.036 7.9E-07 60.2 10.9 104 108-214 173-283 (388)
306 cd03223 ABCD_peroxisomal_ALDP 96.2 0.055 1.2E-06 51.8 11.2 117 109-231 27-152 (166)
307 PRK08533 flagellar accessory p 96.1 0.039 8.5E-07 55.9 10.3 49 108-158 23-71 (230)
308 cd01131 PilT Pilus retraction 96.1 0.011 2.4E-07 58.5 6.0 110 111-230 3-112 (198)
309 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.052 1.1E-06 55.2 11.2 116 108-226 19-165 (229)
310 PRK12726 flagellar biosynthesi 96.0 0.055 1.2E-06 57.7 11.2 102 107-211 204-311 (407)
311 cd00983 recA RecA is a bacter 96.0 0.011 2.3E-07 62.3 5.9 86 107-197 53-143 (325)
312 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.064 1.4E-06 52.3 11.2 21 111-131 1-21 (183)
313 KOG2004 Mitochondrial ATP-depe 96.0 0.0057 1.2E-07 68.5 3.9 105 81-198 410-516 (906)
314 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.012 2.6E-07 58.2 5.9 119 109-234 29-158 (204)
315 TIGR02012 tigrfam_recA protein 96.0 0.0099 2.1E-07 62.5 5.5 87 107-198 53-144 (321)
316 PRK10867 signal recognition pa 96.0 0.074 1.6E-06 58.7 12.5 41 91-131 79-122 (433)
317 PRK07132 DNA polymerase III su 96.0 0.3 6.4E-06 51.3 16.3 169 91-291 5-185 (299)
318 COG4088 Predicted nucleotide k 96.0 0.015 3.2E-07 55.3 5.8 22 110-131 2-23 (261)
319 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.031 6.8E-07 57.8 9.0 50 107-158 34-83 (259)
320 TIGR03499 FlhF flagellar biosy 95.9 0.027 5.8E-07 59.0 8.4 41 108-148 193-233 (282)
321 cd01125 repA Hexameric Replica 95.9 0.08 1.7E-06 54.2 11.7 21 111-131 3-23 (239)
322 PRK07667 uridine kinase; Provi 95.9 0.0094 2E-07 58.7 4.6 37 91-131 3-39 (193)
323 cd03222 ABC_RNaseL_inhibitor T 95.9 0.039 8.5E-07 53.1 8.7 106 109-231 25-136 (177)
324 PRK13948 shikimate kinase; Pro 95.9 0.078 1.7E-06 51.3 10.7 24 108-131 9-32 (182)
325 COG0572 Udk Uridine kinase [Nu 95.9 0.015 3.2E-07 56.8 5.7 77 108-188 7-85 (218)
326 TIGR00382 clpX endopeptidase C 95.9 0.06 1.3E-06 58.9 11.0 51 81-131 76-138 (413)
327 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.048 1E-06 54.9 9.4 118 110-229 31-201 (254)
328 TIGR02238 recomb_DMC1 meiotic 95.9 0.029 6.2E-07 59.4 8.3 67 92-163 83-155 (313)
329 PRK13539 cytochrome c biogenes 95.9 0.063 1.4E-06 53.6 10.5 64 180-246 138-203 (207)
330 PRK14722 flhF flagellar biosyn 95.9 0.06 1.3E-06 58.0 10.8 86 108-198 136-226 (374)
331 PTZ00301 uridine kinase; Provi 95.8 0.013 2.7E-07 58.2 5.3 24 108-131 2-25 (210)
332 PRK10820 DNA-binding transcrip 95.8 0.038 8.3E-07 63.4 9.9 134 81-226 203-348 (520)
333 KOG0739 AAA+-type ATPase [Post 95.8 0.17 3.6E-06 51.1 12.7 96 82-198 133-236 (439)
334 cd03230 ABC_DR_subfamily_A Thi 95.8 0.073 1.6E-06 51.4 10.5 118 109-232 26-160 (173)
335 PRK04328 hypothetical protein; 95.8 0.098 2.1E-06 53.8 11.8 87 108-197 22-138 (249)
336 PRK09354 recA recombinase A; P 95.8 0.022 4.7E-07 60.5 6.9 87 107-198 58-149 (349)
337 KOG4252 GTP-binding protein [S 95.8 0.04 8.7E-07 50.6 7.6 107 112-289 23-130 (246)
338 PRK04301 radA DNA repair and r 95.8 0.047 1E-06 58.5 9.6 55 108-163 101-161 (317)
339 PF08433 KTI12: Chromatin asso 95.8 0.022 4.7E-07 58.9 6.7 23 110-132 2-24 (270)
340 PRK12724 flagellar biosynthesi 95.8 0.092 2E-06 57.0 11.6 23 109-131 223-245 (432)
341 PRK00279 adk adenylate kinase; 95.7 0.057 1.2E-06 54.2 9.7 21 111-131 2-22 (215)
342 PLN03187 meiotic recombination 95.7 0.037 8E-07 59.1 8.6 55 108-163 125-185 (344)
343 cd01121 Sms Sms (bacterial rad 95.7 0.033 7.1E-07 60.4 8.3 97 91-197 68-168 (372)
344 TIGR00064 ftsY signal recognit 95.7 0.05 1.1E-06 56.5 9.3 89 108-198 71-165 (272)
345 PRK00889 adenylylsulfate kinas 95.7 0.081 1.8E-06 51.2 10.3 24 108-131 3-26 (175)
346 PRK13765 ATP-dependent proteas 95.7 0.012 2.7E-07 67.9 5.2 73 82-163 31-104 (637)
347 COG4608 AppF ABC-type oligopep 95.7 0.07 1.5E-06 53.8 9.7 124 108-234 38-177 (268)
348 PF00406 ADK: Adenylate kinase 95.7 0.046 1E-06 51.4 8.2 85 114-209 1-94 (151)
349 COG0467 RAD55 RecA-superfamily 95.7 0.019 4.1E-07 59.7 6.0 54 107-163 21-74 (260)
350 TIGR02858 spore_III_AA stage I 95.6 0.17 3.7E-06 52.3 12.8 128 91-231 98-233 (270)
351 COG1136 SalX ABC-type antimicr 95.6 0.15 3.1E-06 50.6 11.6 65 171-235 144-211 (226)
352 PRK11388 DNA-binding transcrip 95.6 0.046 1E-06 64.9 9.8 128 82-226 325-466 (638)
353 TIGR02239 recomb_RAD51 DNA rep 95.6 0.047 1E-06 58.0 8.7 67 92-163 83-155 (316)
354 PLN03186 DNA repair protein RA 95.6 0.066 1.4E-06 57.3 9.8 67 92-163 110-182 (342)
355 COG1126 GlnQ ABC-type polar am 95.6 0.14 3E-06 49.6 10.7 123 108-233 27-202 (240)
356 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.054 1.2E-06 51.3 8.4 116 110-232 26-145 (157)
357 TIGR01069 mutS2 MutS2 family p 95.6 0.011 2.3E-07 70.6 4.1 182 109-309 322-518 (771)
358 PF07726 AAA_3: ATPase family 95.6 0.0078 1.7E-07 53.3 2.2 27 112-140 2-28 (131)
359 PRK12727 flagellar biosynthesi 95.6 0.047 1E-06 60.8 8.7 24 108-131 349-372 (559)
360 TIGR00708 cobA cob(I)alamin ad 95.6 0.14 3E-06 48.6 10.7 117 109-227 5-140 (173)
361 TIGR00959 ffh signal recogniti 95.5 0.17 3.7E-06 55.9 13.0 41 91-131 78-121 (428)
362 KOG0729 26S proteasome regulat 95.5 0.17 3.6E-06 50.1 11.4 128 82-229 177-328 (435)
363 PRK05917 DNA polymerase III su 95.5 0.3 6.5E-06 50.7 14.1 132 90-244 5-154 (290)
364 COG2842 Uncharacterized ATPase 95.5 0.29 6.3E-06 49.9 13.5 156 81-262 71-228 (297)
365 PF13238 AAA_18: AAA domain; P 95.5 0.009 2E-07 54.4 2.7 20 112-131 1-20 (129)
366 COG1102 Cmk Cytidylate kinase 95.5 0.033 7.1E-07 51.0 6.1 42 111-163 2-43 (179)
367 TIGR03574 selen_PSTK L-seryl-t 95.5 0.078 1.7E-06 54.6 9.9 20 112-131 2-21 (249)
368 KOG2739 Leucine-rich acidic nu 95.5 0.0056 1.2E-07 60.6 1.2 83 519-603 62-153 (260)
369 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.035 7.5E-07 55.5 6.9 120 109-233 29-160 (213)
370 KOG0727 26S proteasome regulat 95.4 0.42 9.2E-06 46.9 13.7 51 82-132 155-212 (408)
371 cd02019 NK Nucleoside/nucleoti 95.4 0.01 2.3E-07 47.1 2.4 22 111-132 1-22 (69)
372 cd03229 ABC_Class3 This class 95.4 0.06 1.3E-06 52.2 8.3 120 109-231 26-165 (178)
373 COG0468 RecA RecA/RadA recombi 95.4 0.046 1E-06 56.2 7.5 89 107-198 58-152 (279)
374 cd02027 APSK Adenosine 5'-phos 95.4 0.15 3.2E-06 47.8 10.4 21 111-131 1-21 (149)
375 cd03217 ABC_FeS_Assembly ABC-t 95.4 0.12 2.7E-06 51.2 10.5 119 109-231 26-168 (200)
376 cd03283 ABC_MutS-like MutS-lik 95.4 0.11 2.4E-06 51.3 10.0 22 110-131 26-47 (199)
377 PF03796 DnaB_C: DnaB-like hel 95.4 0.15 3.2E-06 53.0 11.5 110 109-223 19-136 (259)
378 PF00485 PRK: Phosphoribulokin 95.4 0.011 2.5E-07 58.2 3.0 21 111-131 1-21 (194)
379 COG5238 RNA1 Ran GTPase-activa 95.3 0.01 2.2E-07 58.7 2.5 102 460-562 24-135 (388)
380 cd03215 ABC_Carb_Monos_II This 95.3 0.087 1.9E-06 51.3 9.1 120 109-232 26-169 (182)
381 TIGR02236 recomb_radA DNA repa 95.3 0.096 2.1E-06 56.0 10.1 55 108-163 94-154 (310)
382 TIGR02655 circ_KaiC circadian 95.3 0.09 2E-06 59.8 10.3 66 91-163 249-314 (484)
383 smart00534 MUTSac ATPase domai 95.3 0.016 3.5E-07 56.6 3.8 119 111-233 1-128 (185)
384 KOG2123 Uncharacterized conser 95.3 0.0018 3.8E-08 64.1 -3.0 99 465-576 18-123 (388)
385 TIGR01425 SRP54_euk signal rec 95.3 0.25 5.4E-06 54.3 13.1 24 108-131 99-122 (429)
386 PF12775 AAA_7: P-loop contain 95.3 0.021 4.6E-07 59.2 4.7 33 92-131 23-55 (272)
387 TIGR01313 therm_gnt_kin carboh 95.3 0.095 2.1E-06 50.0 9.0 20 112-131 1-20 (163)
388 PF06745 KaiC: KaiC; InterPro 95.3 0.032 6.8E-07 56.7 5.9 87 108-197 18-125 (226)
389 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.019 4.2E-07 60.2 4.3 50 82-131 61-110 (358)
390 KOG1532 GTPase XAB1, interacts 95.2 0.055 1.2E-06 53.7 7.0 83 108-192 18-121 (366)
391 cd02021 GntK Gluconate kinase 95.2 0.16 3.4E-06 47.7 10.1 21 111-131 1-21 (150)
392 COG1066 Sms Predicted ATP-depe 95.2 0.09 2E-06 55.8 8.9 99 89-198 77-179 (456)
393 PRK05480 uridine/cytidine kina 95.2 0.016 3.4E-07 58.1 3.3 24 108-131 5-28 (209)
394 TIGR00390 hslU ATP-dependent p 95.2 0.046 9.9E-07 59.0 6.9 79 82-162 12-104 (441)
395 PRK05986 cob(I)alamin adenolsy 95.2 0.13 2.9E-06 49.5 9.3 117 109-227 22-158 (191)
396 PRK14528 adenylate kinase; Pro 95.1 0.13 2.7E-06 50.3 9.5 22 110-131 2-23 (186)
397 KOG1947 Leucine rich repeat pr 95.1 0.0015 3.3E-08 75.0 -4.7 242 521-860 187-443 (482)
398 PRK06547 hypothetical protein; 95.1 0.026 5.7E-07 54.1 4.5 24 108-131 14-37 (172)
399 TIGR00764 lon_rel lon-related 95.1 0.037 8.1E-07 64.3 6.6 72 82-163 18-91 (608)
400 TIGR00235 udk uridine kinase. 95.1 0.016 3.6E-07 57.8 3.3 24 108-131 5-28 (207)
401 COG1120 FepC ABC-type cobalami 95.1 0.15 3.4E-06 51.6 10.1 63 172-234 141-206 (258)
402 COG0465 HflB ATP-dependent Zn 95.1 0.22 4.7E-06 56.6 12.3 183 78-286 146-356 (596)
403 KOG0736 Peroxisome assembly fa 95.1 0.49 1.1E-05 54.3 14.7 154 81-254 671-853 (953)
404 PF01078 Mg_chelatase: Magnesi 95.1 0.027 5.9E-07 54.7 4.5 42 82-131 3-44 (206)
405 PTZ00494 tuzin-like protein; P 95.1 0.59 1.3E-05 50.3 14.5 169 78-256 367-543 (664)
406 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.065 1.4E-06 57.9 7.9 103 108-228 61-168 (362)
407 cd03232 ABC_PDR_domain2 The pl 95.1 0.16 3.4E-06 50.0 10.1 23 109-131 33-55 (192)
408 PF01583 APS_kinase: Adenylyls 95.1 0.023 5E-07 52.8 3.8 35 110-146 3-37 (156)
409 PRK06762 hypothetical protein; 95.1 0.016 3.5E-07 55.5 3.0 22 110-131 3-24 (166)
410 PRK10923 glnG nitrogen regulat 95.1 0.066 1.4E-06 61.2 8.5 132 82-226 138-282 (469)
411 PRK03839 putative kinase; Prov 95.1 0.016 3.4E-07 56.5 2.9 21 111-131 2-22 (180)
412 TIGR01360 aden_kin_iso1 adenyl 95.1 0.018 3.9E-07 56.5 3.3 24 108-131 2-25 (188)
413 TIGR00150 HI0065_YjeE ATPase, 95.0 0.034 7.4E-07 50.2 4.7 40 89-132 6-45 (133)
414 cd02025 PanK Pantothenate kina 95.0 0.07 1.5E-06 53.6 7.5 21 111-131 1-21 (220)
415 cd03213 ABCG_EPDR ABCG transpo 95.0 0.2 4.4E-06 49.3 10.7 116 109-228 35-172 (194)
416 PF00006 ATP-synt_ab: ATP synt 95.0 0.083 1.8E-06 52.4 7.8 83 110-198 16-116 (215)
417 PRK15115 response regulator Gl 95.0 0.09 2E-06 59.6 9.3 130 83-226 135-278 (444)
418 PRK13538 cytochrome c biogenes 95.0 0.24 5.3E-06 49.2 11.3 56 179-234 139-196 (204)
419 PF13481 AAA_25: AAA domain; P 95.0 0.068 1.5E-06 52.7 7.3 51 110-160 33-91 (193)
420 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.24 5.3E-06 49.4 11.4 54 179-232 135-189 (207)
421 PF10236 DAP3: Mitochondrial r 95.0 1.1 2.3E-05 47.7 16.6 49 238-288 258-306 (309)
422 TIGR03880 KaiC_arch_3 KaiC dom 95.0 0.18 3.9E-06 51.0 10.5 48 108-157 15-62 (224)
423 PLN02200 adenylate kinase fami 94.9 0.26 5.7E-06 49.9 11.5 24 108-131 42-65 (234)
424 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.32 7E-06 61.7 14.0 25 108-132 1629-1653(2281)
425 PRK00409 recombination and DNA 94.9 0.017 3.7E-07 69.0 3.3 183 108-309 326-523 (782)
426 PRK10463 hydrogenase nickel in 94.9 0.17 3.7E-06 52.3 10.1 87 107-198 102-195 (290)
427 cd03244 ABCC_MRP_domain2 Domai 94.9 0.39 8.5E-06 48.4 12.8 53 180-232 150-203 (221)
428 PF00560 LRR_1: Leucine Rich R 94.9 0.0098 2.1E-07 35.0 0.6 16 524-540 2-17 (22)
429 PTZ00035 Rad51 protein; Provis 94.9 0.14 3.1E-06 54.9 9.9 67 92-163 105-177 (337)
430 cd00984 DnaB_C DnaB helicase C 94.9 0.11 2.5E-06 53.2 9.0 55 108-163 12-66 (242)
431 PRK06731 flhF flagellar biosyn 94.9 0.17 3.6E-06 52.2 9.9 101 109-213 75-182 (270)
432 PRK09270 nucleoside triphospha 94.9 0.11 2.3E-06 52.8 8.6 25 107-131 31-55 (229)
433 COG0541 Ffh Signal recognition 94.9 0.49 1.1E-05 50.9 13.5 71 91-163 79-155 (451)
434 cd03263 ABC_subfamily_A The AB 94.9 0.2 4.3E-06 50.6 10.5 53 180-232 144-197 (220)
435 cd03280 ABC_MutS2 MutS2 homolo 94.9 0.024 5.3E-07 56.2 3.7 21 110-130 29-49 (200)
436 COG2884 FtsE Predicted ATPase 94.9 0.51 1.1E-05 44.8 11.9 63 171-234 139-204 (223)
437 cd03240 ABC_Rad50 The catalyti 94.9 0.18 4E-06 50.0 10.0 61 179-241 131-195 (204)
438 cd00046 DEXDc DEAD-like helica 94.9 0.11 2.4E-06 47.6 8.1 38 111-148 2-39 (144)
439 PRK15424 propionate catabolism 94.9 0.073 1.6E-06 60.6 7.8 47 82-132 219-265 (538)
440 cd03285 ABC_MSH2_euk MutS2 hom 94.8 0.04 8.6E-07 55.4 5.2 122 108-234 29-160 (222)
441 PRK05201 hslU ATP-dependent pr 94.8 0.053 1.2E-06 58.6 6.3 79 82-162 15-107 (443)
442 COG4181 Predicted ABC-type tra 94.8 0.43 9.2E-06 44.3 11.0 126 110-235 37-215 (228)
443 TIGR02329 propionate_PrpR prop 94.8 0.098 2.1E-06 59.6 8.6 131 82-226 212-357 (526)
444 PRK13543 cytochrome c biogenes 94.7 0.39 8.4E-06 48.2 12.1 23 109-131 37-59 (214)
445 KOG3347 Predicted nucleotide k 94.7 0.047 1E-06 49.1 4.6 72 109-189 7-78 (176)
446 COG4618 ArpD ABC-type protease 94.7 0.067 1.4E-06 58.2 6.6 22 110-131 363-384 (580)
447 cd03268 ABC_BcrA_bacitracin_re 94.7 0.22 4.9E-06 49.7 10.3 53 180-232 137-191 (208)
448 PRK03846 adenylylsulfate kinas 94.7 0.3 6.4E-06 48.3 11.0 24 108-131 23-46 (198)
449 KOG0726 26S proteasome regulat 94.7 0.51 1.1E-05 47.5 12.1 95 83-197 186-288 (440)
450 cd03233 ABC_PDR_domain1 The pl 94.7 0.39 8.4E-06 47.7 11.8 24 109-132 33-56 (202)
451 PRK11823 DNA repair protein Ra 94.7 0.092 2E-06 58.8 8.0 58 91-154 66-123 (446)
452 TIGR01818 ntrC nitrogen regula 94.7 0.26 5.5E-06 56.3 11.9 134 82-226 134-278 (463)
453 PRK14723 flhF flagellar biosyn 94.7 0.17 3.7E-06 59.3 10.3 86 109-197 185-273 (767)
454 PF00910 RNA_helicase: RNA hel 94.6 0.019 4.1E-07 50.3 2.0 20 112-131 1-20 (107)
455 PRK04040 adenylate kinase; Pro 94.6 0.024 5.2E-07 55.3 2.9 22 110-131 3-24 (188)
456 PRK14721 flhF flagellar biosyn 94.6 0.13 2.9E-06 56.3 8.9 24 108-131 190-213 (420)
457 PRK00131 aroK shikimate kinase 94.6 0.027 5.8E-07 54.5 3.3 23 109-131 4-26 (175)
458 cd01428 ADK Adenylate kinase ( 94.6 0.33 7.2E-06 47.8 11.1 20 112-131 2-21 (194)
459 TIGR00554 panK_bact pantothena 94.6 0.16 3.4E-06 53.0 8.9 25 107-131 60-84 (290)
460 PRK05973 replicative DNA helic 94.6 0.074 1.6E-06 53.5 6.3 50 108-159 63-112 (237)
461 PRK12597 F0F1 ATP synthase sub 94.6 0.073 1.6E-06 58.9 6.8 88 110-198 144-248 (461)
462 COG1116 TauB ABC-type nitrate/ 94.6 0.29 6.2E-06 48.8 10.1 23 109-131 29-51 (248)
463 cd02028 UMPK_like Uridine mono 94.5 0.054 1.2E-06 52.5 5.1 21 111-131 1-21 (179)
464 PRK08972 fliI flagellum-specif 94.5 0.11 2.3E-06 57.0 7.8 86 109-198 162-263 (444)
465 PRK15453 phosphoribulokinase; 94.5 0.16 3.5E-06 51.9 8.6 24 108-131 4-27 (290)
466 PRK05439 pantothenate kinase; 94.5 0.16 3.4E-06 53.4 8.8 25 107-131 84-108 (311)
467 PF09848 DUF2075: Uncharacteri 94.5 0.11 2.3E-06 56.7 7.9 50 110-159 2-51 (352)
468 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.5 0.39 8.5E-06 48.5 11.6 23 109-131 48-70 (224)
469 PRK14527 adenylate kinase; Pro 94.5 0.1 2.3E-06 51.2 7.2 24 108-131 5-28 (191)
470 PF00154 RecA: recA bacterial 94.5 0.07 1.5E-06 56.1 6.1 99 91-198 38-142 (322)
471 cd03253 ABCC_ATM1_transporter 94.5 0.61 1.3E-05 47.6 13.1 54 179-232 147-201 (236)
472 TIGR00416 sms DNA repair prote 94.5 0.1 2.2E-06 58.4 7.8 58 88-151 77-134 (454)
473 KOG2123 Uncharacterized conser 94.4 0.0014 3E-08 64.8 -6.0 79 649-741 18-99 (388)
474 COG1428 Deoxynucleoside kinase 94.4 0.028 6.1E-07 54.2 2.8 23 109-131 4-26 (216)
475 KOG2739 Leucine-rich acidic nu 94.4 0.024 5.2E-07 56.3 2.4 80 522-605 43-128 (260)
476 KOG0651 26S proteasome regulat 94.4 0.09 2E-06 53.4 6.3 31 107-139 164-194 (388)
477 TIGR03740 galliderm_ABC gallid 94.4 0.28 6E-06 49.6 10.2 53 180-232 135-189 (223)
478 cd03258 ABC_MetN_methionine_tr 94.4 0.28 6.2E-06 49.9 10.4 23 109-131 31-53 (233)
479 COG2274 SunT ABC-type bacterio 94.4 0.19 4E-06 59.3 10.0 58 173-230 613-672 (709)
480 cd03245 ABCC_bacteriocin_expor 94.4 0.31 6.7E-06 49.1 10.5 52 180-231 151-203 (220)
481 TIGR01420 pilT_fam pilus retra 94.4 0.11 2.4E-06 56.2 7.6 111 109-229 122-232 (343)
482 cd01135 V_A-ATPase_B V/A-type 94.4 0.14 3E-06 52.4 7.7 89 110-198 70-177 (276)
483 PRK10875 recD exonuclease V su 94.4 0.12 2.5E-06 60.0 8.1 114 109-228 167-303 (615)
484 PRK10416 signal recognition pa 94.3 0.22 4.8E-06 52.9 9.6 25 108-132 113-137 (318)
485 PRK06995 flhF flagellar biosyn 94.3 0.21 4.5E-06 55.8 9.7 23 109-131 256-278 (484)
486 PRK13947 shikimate kinase; Pro 94.3 0.029 6.2E-07 54.1 2.7 21 111-131 3-23 (171)
487 PRK14532 adenylate kinase; Pro 94.3 0.24 5.1E-06 48.6 9.2 20 112-131 3-22 (188)
488 KOG3928 Mitochondrial ribosome 94.3 1.5 3.3E-05 46.7 15.2 56 236-293 403-458 (461)
489 TIGR03522 GldA_ABC_ATP gliding 94.3 0.34 7.4E-06 51.5 11.0 23 109-131 28-50 (301)
490 TIGR03600 phage_DnaB phage rep 94.3 0.5 1.1E-05 52.9 13.0 55 108-163 193-247 (421)
491 cd03254 ABCC_Glucan_exporter_l 94.3 0.69 1.5E-05 47.0 12.9 53 180-232 150-203 (229)
492 PF00560 LRR_1: Leucine Rich R 94.3 0.023 5.1E-07 33.4 1.2 21 547-568 1-21 (22)
493 cd03264 ABC_drug_resistance_li 94.3 0.32 6.8E-06 48.7 10.2 21 111-131 27-47 (211)
494 PRK12678 transcription termina 94.3 0.078 1.7E-06 59.1 6.0 98 93-198 405-514 (672)
495 cd00227 CPT Chloramphenicol (C 94.2 0.034 7.3E-07 53.8 3.0 22 110-131 3-24 (175)
496 KOG0652 26S proteasome regulat 94.2 0.92 2E-05 44.9 12.5 49 83-131 172-227 (424)
497 cd03250 ABCC_MRP_domain1 Domai 94.2 0.65 1.4E-05 46.1 12.3 59 174-232 132-193 (204)
498 cd02023 UMPK Uridine monophosp 94.2 0.028 6E-07 55.7 2.4 21 111-131 1-21 (198)
499 PRK02496 adk adenylate kinase; 94.2 0.24 5.3E-06 48.3 9.1 21 111-131 3-23 (184)
500 PRK14531 adenylate kinase; Pro 94.2 0.27 5.8E-06 47.9 9.2 21 111-131 4-24 (183)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-84 Score=750.68 Aligned_cols=578 Identities=28% Similarity=0.428 Sum_probs=459.3
Q ss_pred CcccchhhhhhhhhhHHhhcccccc-----ccccccccchhhhhHHHHHHHHHHHHHHHhcc-----ccccCCCC-CC--
Q 002800 1 MFFDIDDELDELNTAIWNASMRTRK-----VRSYLLTCRLLFLRRDVALKLKNLSQTLDGSG-----LKSSDPAD-TG-- 67 (879)
Q Consensus 1 ~~yd~ed~ld~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~-----~~~~~~~~-~~-- 67 (879)
++|++||+++.+.......+..+.. ..+.++ -..++++.+..+..+.+|+..+. ++.....+ .+
T Consensus 67 ~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c---~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~ 143 (889)
T KOG4658|consen 67 LVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLC---LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES 143 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh---hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc
Confidence 4799999999999998765433211 111111 11344555555554444444443 33222111 11
Q ss_pred cccccCCc-ccccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccc-cccccceEEEE
Q 002800 68 EIEQERPM-ISVVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDA-VKTHFSKRIWV 145 (879)
Q Consensus 68 ~~~~~~~~-~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv 145 (879)
......++ .+..+..+ ||.++.++++.+.|..++ ..+++|+||||+||||||+.++|+.. ++.+|+.++||
T Consensus 144 ~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV 216 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV 216 (889)
T ss_pred ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE
Confidence 11111222 44444445 999999999999999873 38999999999999999999999877 99999999999
Q ss_pred Eee--cchHHHHHHHHHHhccCCC-CCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEE
Q 002800 146 SAS--YPEIRIARAILESLKDGVS-SDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILV 222 (879)
Q Consensus 146 ~~s--~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii 222 (879)
.|| ++...++.+|++.++.... ......++++..|.+.|++|||+|||||||+. .+|+.+..++|....||+|++
T Consensus 217 ~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kvvl 294 (889)
T KOG4658|consen 217 VVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVL 294 (889)
T ss_pred EEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEE
Confidence 999 9999999999999983222 22233478899999999999999999999996 579999999999999999999
Q ss_pred Eccchhhhhh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCH
Q 002800 223 TTCEENVINK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNI 301 (879)
Q Consensus 223 TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~ 301 (879)
|||+.+|+.. +++...+++..|+.+|||.||++.||.... ..++.++++|++|+++|+|+|||+.++|+.|+.+.+.
T Consensus 295 TTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~--~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~ 372 (889)
T KOG4658|consen 295 TTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL--GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTV 372 (889)
T ss_pred EeccHhhhhccccCCccccccccCccccHHHHHHhhccccc--cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcH
Confidence 9999999999 778899999999999999999999997744 3344589999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccc----ccCccchhhHHhhhcCChhHHHHHHhHhccCCCCcccCHHHHHHHHHHcCCcccCC-CccH
Q 002800 302 GEWLNVLKSKIWELK----LADKEHFLPLLLSYYDLPSALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEG-RDDT 376 (879)
Q Consensus 302 ~~w~~~~~~~~~~~~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~~~-~~~~ 376 (879)
.+|+.+.+...+.+. +..+.+++++++||++||+++|.||+|||+||+||.|+++.|+.+|+||||+.+.. +.++
T Consensus 373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~ 452 (889)
T KOG4658|consen 373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA 452 (889)
T ss_pred HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence 999999997766532 23467899999999999999999999999999999999999999999999999844 5899
Q ss_pred HHHHHHHHHHHhhccchhhhhcccCCCceeeeccchhHHHHHHHhhc-----cceeeeecC-CccccC-CCCCCCeeEEE
Q 002800 377 ELIGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHNIVHDFAQFLTK-----NECFNLEVN-GFEMCP-LESNENIQHLM 449 (879)
Q Consensus 377 e~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdli~dla~~~~~-----~~~~~~~~~-~~~~~~-~~~~~~~r~L~ 449 (879)
++.|..|+.+|+.++|++..... ++.. .|+|||+++|+|.++++ .+...+..+ +....+ ......+|+++
T Consensus 453 ~d~G~~~i~~LV~~~Ll~~~~~~--~~~~-~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s 529 (889)
T KOG4658|consen 453 EDVGYDYIEELVRASLLIEERDE--GRKE-TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMS 529 (889)
T ss_pred hcchHHHHHHHHHHHHHhhcccc--ccee-EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEE
Confidence 99999999999999999987754 4444 89999999999999999 665444432 222222 22367889999
Q ss_pred EEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEec
Q 002800 450 IKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNL 529 (879)
Q Consensus 450 l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L 529 (879)
+.++.+...+... +.++|+||.+.++.. .+......+|..++.||||||++ |..+.++|.+|++|.|||||+|
T Consensus 530 ~~~~~~~~~~~~~-~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~-----~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 530 LMNNKIEHIAGSS-ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSG-----NSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred EeccchhhccCCC-CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCC-----CCccCcCChHHhhhhhhhcccc
Confidence 9999887555443 455899999998742 13444567799999999999998 6889999999999999999999
Q ss_pred ccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceee
Q 002800 530 SRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIV 603 (879)
Q Consensus 530 ~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 603 (879)
+++. +..+|..+++|..|++|++..+..+..+|..+..|.+||+|.+.......-...++.+.+|++|..+..
T Consensus 603 ~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 603 SDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999 999999999999999999999977777777777899999999987652221222444455555544433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7e-67 Score=645.32 Aligned_cols=728 Identities=21% Similarity=0.272 Sum_probs=516.4
Q ss_pred HHHHHHHHHHHHhcc--cccc--CCC-C------CCcccccCCc-ccccCCCceeeehhhHHHHHHHHhcCCCCCCCCcc
Q 002800 43 ALKLKNLSQTLDGSG--LKSS--DPA-D------TGEIEQERPM-ISVVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLP 110 (879)
Q Consensus 43 ~~~i~~~~~~l~~i~--~~~~--~~~-~------~~~~~~~~~~-~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 110 (879)
..++++|++.|.+++ .|.. ... + +...+..... ++..+..++|||+++++++..+|.... .+++
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 457899999999987 3322 111 1 1111222222 444566789999999999999997554 3789
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--------cc---------hHHHHHHHHHHhccCCCCCchhH
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--------YP---------EIRIARAILESLKDGVSSDLVEI 173 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--------~~---------~~~~~~~i~~~l~~~~~~~~~~~ 173 (879)
+|+||||||+||||||+++|+ ++..+|+..+|+... +. ...+.++++.++..........
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~- 285 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH- 285 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC-
Confidence 999999999999999999999 788899998887421 00 1234555565554222211111
Q ss_pred HHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhhhcCccceEeCCCCCHHhHHHHH
Q 002800 174 DTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINKMGNTRMISLGTLSEEASWSLF 253 (879)
Q Consensus 174 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf 253 (879)
...+++.++++|+||||||||+. ++|+.+.....+.++||+||||||++.++..++..++|+++.|+++|||+||
T Consensus 286 ---~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 286 ---LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMF 360 (1153)
T ss_pred ---HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHH
Confidence 14567888999999999999984 7899998877778899999999999999988777889999999999999999
Q ss_pred HHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCHHHHHHHHhhhhccccccCccchhhHHhhhcCC
Q 002800 254 CLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGEWLNVLKSKIWELKLADKEHFLPLLLSYYDL 333 (879)
Q Consensus 254 ~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L 333 (879)
+++||+...+ .+++.+++++|+++|+|+||||+++|++|+.+ +..+|+.++++..+.. +.++.++|++||++|
T Consensus 361 ~~~Af~~~~~---~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 361 CRSAFKKNSP---PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHhcCCCCC---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 9999987544 34578889999999999999999999999876 7899999998865432 356999999999999
Q ss_pred hh-HHHHHHhHhccCCCCcccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHhhccchhhhhcccCCCceeeeccch
Q 002800 334 PS-ALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDDTELIGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHN 412 (879)
Q Consensus 334 ~~-~~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhd 412 (879)
++ ..|.||+++|+||.++.++ .+..|+|.+.+... ..+..|+++||++... + .+.|||
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~----------~~l~~L~~ksLi~~~~-----~---~~~MHd 492 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN----------IGLKNLVDKSLIHVRE-----D---IVEMHS 492 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------hChHHHHhcCCEEEcC-----C---eEEhhh
Confidence 87 5999999999999987553 47788888765432 2388999999997643 1 689999
Q ss_pred hHHHHHHHhhcccee-------eeecCCcccc--CCCCCCCeeEEEEEecccCC---CcccccCCCCccEEEeccCCCc-
Q 002800 413 IVHDFAQFLTKNECF-------NLEVNGFEMC--PLESNENIQHLMIKFETERK---FPTSVYNRKRLRSLVVERGEGF- 479 (879)
Q Consensus 413 li~dla~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~r~L~l~~~~~~~---~~~~~~~~~~LrsL~l~~~~~~- 479 (879)
++++||+.+++.+.. .....+...+ .-....+++.+++..+.... ....+..+++|+.|.+..+...
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 999999999876631 1111000000 00113456666655443322 2234555666666655432100
Q ss_pred --c------------------------cccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCC
Q 002800 480 --M------------------------TGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNS 533 (879)
Q Consensus 480 --~------------------------~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~ 533 (879)
. ....+|..| .+.+|+.|+|++ +.+..+|..+..+++|++|+|+++.
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~------s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG------SKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC------ccccccccccccCCCCCEEECCCCC
Confidence 0 012233333 457888888888 6788888888889999999998887
Q ss_pred CCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcc-cccCCccCCCCCCCCcCCceeecccCCCCcc
Q 002800 534 KIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTS-LSYMPKGIERLTCLRTLNEFIVSVGSDDDKA 612 (879)
Q Consensus 534 ~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~ 612 (879)
.+..+|. ++.+++|++|+|++|..+..+|..+++|++|++|++++|. +..+|..+ ++++|+.|++..+..
T Consensus 646 ~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~------- 716 (1153)
T PLN03210 646 NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR------- 716 (1153)
T ss_pred CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC-------
Confidence 6888885 7888999999999888888899889999999999998875 66788766 678888887655432
Q ss_pred cCcccccc-cccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEe
Q 002800 613 CKLECLKS-LNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIF 691 (879)
Q Consensus 613 ~~l~~L~~-L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 691 (879)
+..++. ..+|. .|.+. .... ..++..+ .+++|+.|.++.+.............. .....+++|+.|+++
T Consensus 717 --L~~~p~~~~nL~-~L~L~---~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~--~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 717 --LKSFPDISTNIS-WLDLD---ETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP--LMTMLSPSLTRLFLS 786 (1153)
T ss_pred --ccccccccCCcC-eeecC---CCcc-ccccccc-cccccccccccccchhhccccccccch--hhhhccccchheeCC
Confidence 111110 11122 22222 1111 1122222 466777777765432100000000000 011235789999999
Q ss_pred eecCCccCcchhhcccCCcEEeEcCCCCCCCCCCCCCCCccceeeccccccceEecccccCCchhhhccccccccccccC
Q 002800 692 YHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPRLGELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLGTDR 771 (879)
Q Consensus 692 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 771 (879)
+|......|.+++++++|+.|+|++|..++.+|....+++|+.|+|++|..++.++.. ..+++.++++.
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~ 855 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSR 855 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-----------ccccCEeECCC
Confidence 9864443388899999999999999999999998668999999999999988766432 23577888999
Q ss_pred CCCCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCccCeeeccCCCCCcCCCCC----------
Q 002800 772 SRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLETLPDD---------- 841 (879)
Q Consensus 772 ~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~L~~lp~~---------- 841 (879)
|.+..++. .+..+++|+.|++++|.+++.++. ....+++|+.|.+.+|++|+.++-.
T Consensus 856 n~i~~iP~-----si~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~ 922 (1153)
T PLN03210 856 TGIEEVPW-----WIEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMAT 922 (1153)
T ss_pred CCCccChH-----HHhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCcccccccCCCCchhhhhhc
Confidence 99887765 356789999999999999998876 4457899999999999999866431
Q ss_pred -----CCCCccEEEEeecCchHHh
Q 002800 842 -----YLPQLLDLKIFSCPKLEER 860 (879)
Q Consensus 842 -----~l~~L~~L~i~~c~~l~~~ 860 (879)
.+|+...+.+.+|.+|...
T Consensus 923 ~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 923 DNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred ccccccCCchhccccccccCCCch
Confidence 1344456678888887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-44 Score=384.27 Aligned_cols=278 Identities=38% Similarity=0.591 Sum_probs=225.7
Q ss_pred ehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHHhcc
Q 002800 87 RDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILESLKD 164 (879)
Q Consensus 87 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~l~~ 164 (879)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++ .+..+++.+|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999854 389999999999999999999999976789999999999999 7778999999999983
Q ss_pred CCC-C-CchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhhhcCc-cceEeC
Q 002800 165 GVS-S-DLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINKMGN-TRMISL 241 (879)
Q Consensus 165 ~~~-~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~-~~~~~l 241 (879)
... . ...+.+.....+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 322 1 4567778999999999999999999999995 5898998888888889999999999998877654 678999
Q ss_pred CCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCHHHHHHHHhhhhccccc---c
Q 002800 242 GTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGEWLNVLKSKIWELKL---A 318 (879)
Q Consensus 242 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~ 318 (879)
++|+.+||++||.+.++.... ...+.+++.+++|+++|+|+||||+++|++|+.+.+..+|+.++++..+.... .
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~--~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKES--ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987651 22334466799999999999999999999997766788999998876655432 3
Q ss_pred CccchhhHHhhhcCChhHHHHHHhHhccCCCCcccCHHHHHHHHHHcCCcccCC
Q 002800 319 DKEHFLPLLLSYYDLPSALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEG 372 (879)
Q Consensus 319 ~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~~~ 372 (879)
...+..++.+||+.||++.|.||+|||+||+++.|+++.|+++|+|||||+..+
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 467999999999999999999999999999999999999999999999998653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=9e-25 Score=271.80 Aligned_cols=385 Identities=19% Similarity=0.152 Sum_probs=218.2
Q ss_pred CCCeeEEEEEecccCC-CcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCccccc
Q 002800 442 NENIQHLMIKFETERK-FPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRK 520 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~-~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 520 (879)
..++++|++.+|.+.. .|..+.++++|++|++.+| .+...+|..+.++++|++|+|++ |.....+|..+++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~-----n~l~~~~p~~l~~ 234 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN---QLVGQIPRELGQMKSLKWIYLGY-----NNLSGEIPYEIGG 234 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCC---CCcCcCChHHcCcCCccEEECcC-----CccCCcCChhHhc
Confidence 4556666666665432 4555666666677766665 23333455566677777777766 2222345666677
Q ss_pred CCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccc-cCCccCCCCCCCCcCC
Q 002800 521 LLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLS-YMPKGIERLTCLRTLN 599 (879)
Q Consensus 521 L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~ 599 (879)
+++|++|++++|.....+|..++++++|++|++++|.....+|..+.++++|++|++++|.+. .+|..+.++++|+.|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 777777777776644466666777777777777766544556666777777777777776655 5555566667777666
Q ss_pred ceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCc--------
Q 002800 600 EFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKD-------- 671 (879)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------- 671 (879)
+..+..... ....+..+++ |+ .+.+. +.......+..+..+++|+.|++++|......+....
T Consensus 315 l~~n~~~~~--~~~~~~~l~~---L~-~L~L~---~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 315 LFSNNFTGK--IPVALTSLPR---LQ-VLQLW---SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCccCCc--CChhHhcCCC---CC-EEECc---CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 555443111 1112222222 22 22222 1111223344556666777777766654321110000
Q ss_pred -------hHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCC-CCCCCccceeeccccccc
Q 002800 672 -------DEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR-LGELPSLESLTVRNMRRL 743 (879)
Q Consensus 672 -------~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l~~L~~L~L~~~~~l 743 (879)
.......+..+++|+.|++.+|......|..+..+++|+.|++++|.....+|. +..+++|+.|++++|...
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 000111233456777777777766544466677778888888887765555553 556788888888876543
Q ss_pred eEeccc---------------ccCCchhhhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCcccccccc
Q 002800 744 EKVGNE---------------FLGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKY 808 (879)
Q Consensus 744 ~~~~~~---------------~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~ 808 (879)
..++.. +.+..+..+.++..++.++++.|.+.+..+ ..+..+++|+.|++++| .++....
T Consensus 466 ~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N-~l~~~~p 540 (968)
T PLN00113 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP----DELSSCKKLVSLDLSHN-QLSGQIP 540 (968)
T ss_pred eecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC----hHHcCccCCCEEECCCC-cccccCC
Confidence 333221 111112223334445555555555544322 12345667777777766 3333222
Q ss_pred ccccCCCCCCCCCCccCeeeccCCCCCcCCCCC--CCCCccEEEEeecC
Q 002800 809 SVTTSTWPHDRLMPRLCSLTIGFCPKLETLPDD--YLPQLLDLKIFSCP 855 (879)
Q Consensus 809 ~~~~~~~~~~~~~p~L~~L~l~~C~~L~~lp~~--~l~~L~~L~i~~c~ 855 (879)
.....+++|+.|++++|.-...+|.. .+++|+.|++++|+
T Consensus 541 -------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 541 -------ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred -------hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 23457888999999887555567763 36789999998886
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.9e-24 Score=268.83 Aligned_cols=378 Identities=19% Similarity=0.130 Sum_probs=193.2
Q ss_pred CCCeeEEEEEecccCC-CcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCccccc
Q 002800 442 NENIQHLMIKFETERK-FPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRK 520 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~-~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 520 (879)
..++++|.+..+.+.. .|..+.++++|++|.+.+| .+...+|..+.++++|++|+|++ |.....+|..+++
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~-----n~l~~~~p~~l~~ 282 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN---NLTGPIPSSLGNLKNLQYLFLYQ-----NKLSGPIPPSIFS 282 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc---eeccccChhHhCCCCCCEEECcC-----CeeeccCchhHhh
Confidence 3445555555554432 3444555555555555544 22223444455555555555555 2222234555555
Q ss_pred CCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccc-cCCccCCCCCCCCcCC
Q 002800 521 LLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLS-YMPKGIERLTCLRTLN 599 (879)
Q Consensus 521 L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~ 599 (879)
+.+|++|++++|.....+|..+.++++|++|++++|.....+|..+..+++|+.|++++|.+. .+|..++.+++|+.|+
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 555555555555533345555555555555555555444445555555555555555555544 4454555555555555
Q ss_pred ceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCC---------
Q 002800 600 EFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNK--------- 670 (879)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------- 670 (879)
+..+..... ....+..+.++. .+. +.........+..+..+++|+.|++++|......+...
T Consensus 363 Ls~n~l~~~--~p~~~~~~~~L~----~L~---l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 363 LSTNNLTGE--IPEGLCSSGNLF----KLI---LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCeeEee--CChhHhCcCCCC----EEE---CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 443332100 000111111111 111 11111111223334444455555555444321111000
Q ss_pred ------chHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCC-CCCCCccceeeccccccc
Q 002800 671 ------DDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR-LGELPSLESLTVRNMRRL 743 (879)
Q Consensus 671 ------~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l~~L~~L~L~~~~~l 743 (879)
........+..+++|+.|++.+|......|.++ ..++|+.|++++|.....+|. +..+++|+.|+|++|...
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 000000111234556666666665443323333 345666666666655545553 666777777777765432
Q ss_pred eEecccccCCchhhhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCc
Q 002800 744 EKVGNEFLGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPR 823 (879)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~ 823 (879)
..++ ..+..+..|+.++++.|.+++..+ ..+..+++|+.|+|++|.-...++. ....+++
T Consensus 513 ~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~ 572 (968)
T PLN00113 513 GEIP--------DELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQLDLSQNQLSGEIPK--------NLGNVES 572 (968)
T ss_pred eeCC--------hHHcCccCCCEEECCCCcccccCC----hhHhCcccCCEEECCCCcccccCCh--------hHhcCcc
Confidence 2222 234566789999999999997654 2356789999999999944334544 4557899
Q ss_pred cCeeeccCCCCCcCCCCC-CCCCccEEEEeecCch
Q 002800 824 LCSLTIGFCPKLETLPDD-YLPQLLDLKIFSCPKL 857 (879)
Q Consensus 824 L~~L~l~~C~~L~~lp~~-~l~~L~~L~i~~c~~l 857 (879)
|+.|++++|+-...+|.. .+.++....+.+.+.+
T Consensus 573 L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred cCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 999999998766678863 3445555555555533
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.4e-26 Score=239.91 Aligned_cols=338 Identities=24% Similarity=0.287 Sum_probs=204.0
Q ss_pred CCeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCccccccc--ccCccccc
Q 002800 443 ENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIK--RVPRGIRK 520 (879)
Q Consensus 443 ~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~--~lp~~i~~ 520 (879)
..++.|.+....+..+|..+..+.+|..|.+..|. +. .+...++.++.||.+++.. |+++ .+|..|..
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~---L~-~vhGELs~Lp~LRsv~~R~------N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ---LI-SVHGELSDLPRLRSVIVRD------NNLKNSGIPTDIFR 101 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh---hH-hhhhhhccchhhHHHhhhc------cccccCCCCchhcc
Confidence 34555666555555566666666666666665552 11 1233355566666666665 3333 35666666
Q ss_pred CCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchh-hhcccccceEecCCcccccCCccCCCCCCCCcCC
Q 002800 521 LLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQR-MGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLN 599 (879)
Q Consensus 521 L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 599 (879)
|..|..|+||+|+ +++.|..+..-+|+-+|+|++| .+..+|.. +.+|+-|-+|+|++|.+..+|+.+.+|.+||+|.
T Consensus 102 l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 6666666666666 6666666666666666666666 56666654 3466666666666666666666666666666666
Q ss_pred ceeecccCCCCcccCcccccccccCCCeeEEcccCCCCh-hcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcC
Q 002800 600 EFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSK-DEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEG 678 (879)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 678 (879)
+..+.. ....+.+|+.++.|. .| .+++... ...++.++..+.||..++++.|.+. .+.+.
T Consensus 180 Ls~NPL-----~hfQLrQLPsmtsL~-vL---hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----------~vPec 240 (1255)
T KOG0444|consen 180 LSNNPL-----NHFQLRQLPSMTSLS-VL---HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----------IVPEC 240 (1255)
T ss_pred cCCChh-----hHHHHhcCccchhhh-hh---hcccccchhhcCCCchhhhhhhhhccccccCCC----------cchHH
Confidence 555443 333444444444332 22 2222222 4445677788888888999887652 23345
Q ss_pred CCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCC-CCCCCccceeeccccccceEecccccCCchhh
Q 002800 679 LQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR-LGELPSLESLTVRNMRRLEKVGNEFLGIDESR 757 (879)
Q Consensus 679 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 757 (879)
+...++|+.|++++|.++.+ ........+|++|+|+.| .+..+|. +.+|+.|+.|.+.+. .|+ |.|.++
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~-----FeGiPS-- 310 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLT-----FEGIPS-- 310 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-ccc-----ccCCcc--
Confidence 56678899999999988877 445566778899999888 5677775 788889988888762 222 222221
Q ss_pred hccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCccCeeeccCCCCCcC
Q 002800 758 LLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLET 837 (879)
Q Consensus 758 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~L~~ 837 (879)
.++.+-+|+++...++ +|+-.+. ++..+++|+.|.+. |+.|.+
T Consensus 311 ---------------------------GIGKL~~Levf~aanN-~LElVPE--------glcRC~kL~kL~L~-~NrLiT 353 (1255)
T KOG0444|consen 311 ---------------------------GIGKLIQLEVFHAANN-KLELVPE--------GLCRCVKLQKLKLD-HNRLIT 353 (1255)
T ss_pred ---------------------------chhhhhhhHHHHhhcc-ccccCch--------hhhhhHHHHHhccc-ccceee
Confidence 2334555666666555 5554443 44556666666664 466666
Q ss_pred CCCC--CCCCccEEEEeecCchH
Q 002800 838 LPDD--YLPQLLDLKIFSCPKLE 858 (879)
Q Consensus 838 lp~~--~l~~L~~L~i~~c~~l~ 858 (879)
||+. .||.|+.|++...|+|.
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCcc
Confidence 6652 35666666666666554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-23 Score=220.24 Aligned_cols=361 Identities=20% Similarity=0.229 Sum_probs=254.7
Q ss_pred CCCeeEEEEEecccCC-CcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCccccccccc-Ccccc
Q 002800 442 NENIQHLMIKFETERK-FPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRV-PRGIR 519 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~-~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~ 519 (879)
+...+.|++++|.+.. .+..+.++++|+.+.+..|. ...+|.+.....+|..|+|.+ |.|..+ .+.+.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~----Lt~IP~f~~~sghl~~L~L~~------N~I~sv~se~L~ 146 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE----LTRIPRFGHESGHLEKLDLRH------NLISSVTSEELS 146 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccch----hhhcccccccccceeEEeeec------cccccccHHHHH
Confidence 5667778888887765 34556778888888887763 333566555566688888887 666665 35567
Q ss_pred cCCCCCEEecccCCCCcccCc-ccccCCCCcEEeccCcccccccc-hhhhcccccceEecCCcccccCCcc-CCCCCCCC
Q 002800 520 KLLHLRYLNLSRNSKIAELPE-SLCDLYNLETMELSWCISLKRLP-QRMGQLINLWHLVNDGTSLSYMPKG-IERLTCLR 596 (879)
Q Consensus 520 ~L~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~ 596 (879)
.++.||.||||.|. |..+|. ++..=.++++|+|++| .+..+- ..|..|.+|-.|.|+.|.++.+|.. |.+|++|+
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 77778888888887 777774 3445567888888877 455554 3467777888888888888888754 55588888
Q ss_pred cCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhh
Q 002800 597 TLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDAL 676 (879)
Q Consensus 597 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 676 (879)
.|.+-.+..... .+..++.|++|++|+ +.-.++.... ...|-.+.+++.|+|..|...... -
T Consensus 225 ~LdLnrN~iriv--e~ltFqgL~Sl~nlk--lqrN~I~kL~-----DG~Fy~l~kme~l~L~~N~l~~vn---------~ 286 (873)
T KOG4194|consen 225 SLDLNRNRIRIV--EGLTFQGLPSLQNLK--LQRNDISKLD-----DGAFYGLEKMEHLNLETNRLQAVN---------E 286 (873)
T ss_pred hhhccccceeee--hhhhhcCchhhhhhh--hhhcCccccc-----Ccceeeecccceeecccchhhhhh---------c
Confidence 887666554211 345566666666553 2222222222 234667888999999988763221 1
Q ss_pred cCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCC--CCCCCccceeeccccccceEecccccCCc
Q 002800 677 EGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR--LGELPSLESLTVRNMRRLEKVGNEFLGID 754 (879)
Q Consensus 677 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 754 (879)
..+..+..|+.|++++|.+.++.++.....++|+.|+|++| .+..++. +..|..|++|.|+. +.++++.
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~------- 357 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLA------- 357 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHH-------
Confidence 34566788999999999988887777778899999999998 4566664 77889999999987 3344442
Q ss_pred hhhhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCccCeeeccCCCC
Q 002800 755 ESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPK 834 (879)
Q Consensus 755 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~ 834 (879)
...+..+.+|+.++|++|.++++.+... ..+.++|+|+.|.|.++ +++.++. .....+++|+.|++.+ +-
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa-~~f~gl~~LrkL~l~gN-qlk~I~k-------rAfsgl~~LE~LdL~~-Na 427 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAA-VAFNGLPSLRKLRLTGN-QLKSIPK-------RAFSGLEALEHLDLGD-NA 427 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecch-hhhccchhhhheeecCc-eeeecch-------hhhccCcccceecCCC-Cc
Confidence 3345567789999999999999877533 34678999999999999 8888876 4556799999999988 67
Q ss_pred CcCCCCCCC--CCccEEEE
Q 002800 835 LETLPDDYL--PQLLDLKI 851 (879)
Q Consensus 835 L~~lp~~~l--~~L~~L~i 851 (879)
+.++.+..| ..|++|.+
T Consensus 428 iaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 428 IASIQPNAFEPMELKELVM 446 (873)
T ss_pred ceeecccccccchhhhhhh
Confidence 777766444 26777754
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.6e-23 Score=220.82 Aligned_cols=322 Identities=25% Similarity=0.257 Sum_probs=249.6
Q ss_pred CCCeeEEEEEecccCCCcccccCCCCccEEEeccCCCccc-ccchhhhhccCCcccEEEcCCCCCcccccccccCccccc
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMT-GINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRK 520 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 520 (879)
..++.||++.+|.+..+...+..++.||++++..|. + ...+|..+-++..|.+|||++ |.+.+.|..+.+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~---LKnsGiP~diF~l~dLt~lDLSh------NqL~EvP~~LE~ 124 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN---LKNSGIPTDIFRLKDLTILDLSH------NQLREVPTNLEY 124 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc---cccCCCCchhcccccceeeecch------hhhhhcchhhhh
Confidence 678899999999988788889999999999998873 3 333555577999999999999 899999999999
Q ss_pred CCCCCEEecccCCCCcccCccc-ccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCC-ccCCCCCCCCcC
Q 002800 521 LLHLRYLNLSRNSKIAELPESL-CDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMP-KGIERLTCLRTL 598 (879)
Q Consensus 521 L~~Lr~L~L~~~~~i~~lP~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L 598 (879)
-+++-.|+||+|+ |..+|.++ -+|..|-+|||++| .+..+|..+..|.+|+.|.|++|++..+. ..+..+++|++|
T Consensus 125 AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 9999999999999 99999875 58999999999998 79999999999999999999999865221 234567888888
Q ss_pred CceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcC
Q 002800 599 NEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEG 678 (879)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 678 (879)
++...+..-. .-...+..|.+|..+ .++-.+ ...++..+.++.+|+.|.|+.|.++...- .
T Consensus 203 hms~TqRTl~-N~Ptsld~l~NL~dv--DlS~N~------Lp~vPecly~l~~LrrLNLS~N~iteL~~----------~ 263 (1255)
T KOG0444|consen 203 HMSNTQRTLD-NIPTSLDDLHNLRDV--DLSENN------LPIVPECLYKLRNLRRLNLSGNKITELNM----------T 263 (1255)
T ss_pred hcccccchhh-cCCCchhhhhhhhhc--cccccC------CCcchHHHhhhhhhheeccCcCceeeeec----------c
Confidence 8776654211 011223333333322 122112 23446788899999999999998643211 1
Q ss_pred CCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCC-CCCCCC-CCCCCccceeeccccccceEecccccCCchh
Q 002800 679 LQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCIN-LEQLPR-LGELPSLESLTVRNMRRLEKVGNEFLGIDES 756 (879)
Q Consensus 679 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~lp~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 756 (879)
.....+|++|+++.|..+.+ |+.+..+++|++|.+.+|+. .+-+|+ +|+|.+|+++...+ +.|+-++.++.
T Consensus 264 ~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglc----- 336 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLC----- 336 (1255)
T ss_pred HHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhh-----
Confidence 12235899999999999999 99999999999999988863 356776 99999999999987 55776666544
Q ss_pred hhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCcccccccc
Q 002800 757 RLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKY 808 (879)
Q Consensus 757 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~ 808 (879)
.|..|+.+.|+.|++..+|+. +.-+|.|+.|++..+++|.--+.
T Consensus 337 ---RC~kL~kL~L~~NrLiTLPea-----IHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 337 ---RCVKLQKLKLDHNRLITLPEA-----IHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ---hhHHHHHhcccccceeechhh-----hhhcCCcceeeccCCcCccCCCC
Confidence 345678888999999888873 44678999999999998865544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-21 Score=206.14 Aligned_cols=342 Identities=21% Similarity=0.239 Sum_probs=259.4
Q ss_pred CCCeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccC-ccccc
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVP-RGIRK 520 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~ 520 (879)
.++++.+.+..|.+..+|.-.....+|..|++..| .+...-.+.++-++.||+|||+. |.+.++| .++..
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N---~I~sv~se~L~~l~alrslDLSr------N~is~i~~~sfp~ 171 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN---LISSVTSEELSALPALRSLDLSR------NLISEIPKPSFPA 171 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeecc---ccccccHHHHHhHhhhhhhhhhh------chhhcccCCCCCC
Confidence 78899999999998888877777888999999988 45554556688899999999999 8899887 45677
Q ss_pred CCCCCEEecccCCCCcccC-cccccCCCCcEEeccCcccccccchh-hhcccccceEecCCcccccC-CccCCCCCCCCc
Q 002800 521 LLHLRYLNLSRNSKIAELP-ESLCDLYNLETMELSWCISLKRLPQR-MGQLINLWHLVNDGTSLSYM-PKGIERLTCLRT 597 (879)
Q Consensus 521 L~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~ 597 (879)
-.++++|+|++|. |+.+- ..+..|.+|-+|.|+.| .+..+|.. |.+|++|+.|+|..|.+..+ --.|..|.+|+.
T Consensus 172 ~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 172 KVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 7899999999999 88775 46788999999999999 68888875 55599999999999987644 235788999999
Q ss_pred CCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhc
Q 002800 598 LNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALE 677 (879)
Q Consensus 598 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 677 (879)
|.+..++.... ....+-.+.++..|. |....+ ......++.++..|+.|++++|.+... -..
T Consensus 250 lklqrN~I~kL--~DG~Fy~l~kme~l~--L~~N~l-----~~vn~g~lfgLt~L~~L~lS~NaI~ri---------h~d 311 (873)
T KOG4194|consen 250 LKLQRNDISKL--DDGAFYGLEKMEHLN--LETNRL-----QAVNEGWLFGLTSLEQLDLSYNAIQRI---------HID 311 (873)
T ss_pred hhhhhcCcccc--cCcceeeecccceee--cccchh-----hhhhcccccccchhhhhccchhhhhee---------ecc
Confidence 98877766443 333444444444442 332222 333356788899999999999876321 124
Q ss_pred CCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCC--CCCCCccceeeccccccceEecccccCCch
Q 002800 678 GLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR--LGELPSLESLTVRNMRRLEKVGNEFLGIDE 755 (879)
Q Consensus 678 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 755 (879)
.+.-++.|+.|++++|.++++++..+..+..|+.|.|+.|. +..+.. +..+.+|++|+|++.. +....+. ..
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~-ls~~IED----aa 385 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED----AA 385 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec----ch
Confidence 55667899999999999999988889999999999999994 555543 6789999999999833 3333222 22
Q ss_pred hhhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCccCeeeccC
Q 002800 756 SRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGF 831 (879)
Q Consensus 756 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 831 (879)
..+..+..|+.+.+.+|++..++. ..+.+|++||+|+|.++ -+.++.. ..+..| +|++|.+..
T Consensus 386 ~~f~gl~~LrkL~l~gNqlk~I~k----rAfsgl~~LE~LdL~~N-aiaSIq~-------nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQLKSIPK----RAFSGLEALEHLDLGDN-AIASIQP-------NAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhccchhhhheeecCceeeecch----hhhccCcccceecCCCC-cceeecc-------cccccc-hhhhhhhcc
Confidence 334557788889999999988766 45679999999999988 4555544 333455 778777654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=2.3e-19 Score=223.18 Aligned_cols=347 Identities=21% Similarity=0.250 Sum_probs=213.0
Q ss_pred CCCeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccC
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKL 521 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 521 (879)
+.++|.|.+..+.....|..+ ...+|+.|.+.++ .+. .++..+..+++|+.|+|++ |+.+..+|. ++.+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s---~l~-~L~~~~~~l~~Lk~L~Ls~-----~~~l~~ip~-ls~l 656 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS---KLE-KLWDGVHSLTGLRNIDLRG-----SKNLKEIPD-LSMA 656 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc---ccc-ccccccccCCCCCEEECCC-----CCCcCcCCc-cccC
Confidence 456788888777666666555 5678888888776 232 2455567889999999998 566777775 7888
Q ss_pred CCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcc-cccCCccCCCCCCCCcCCc
Q 002800 522 LHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTS-LSYMPKGIERLTCLRTLNE 600 (879)
Q Consensus 522 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~~ 600 (879)
++|++|+|++|..+..+|.++++|++|++|++++|..+..+|..+ ++++|++|++++|. +..+|.. .++|+.|.+
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L 732 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDL 732 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeec
Confidence 999999999988788999999999999999999998888898876 78899999998886 4455542 356666665
Q ss_pred eeecccCCCCcccCcccccccccCCCeeEEcccCCCCh----hcccccccCCccccceEEEEeccCCCCCCCCCchHhhh
Q 002800 601 FIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSK----DEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDAL 676 (879)
Q Consensus 601 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 676 (879)
..+.....+.. . .+.+|.. |.+.++..... ....+......++|+.|+++.|..... ..
T Consensus 733 ~~n~i~~lP~~-~---~l~~L~~----L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~---------lP 795 (1153)
T PLN03210 733 DETAIEEFPSN-L---RLENLDE----LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE---------LP 795 (1153)
T ss_pred CCCcccccccc-c---ccccccc----ccccccchhhccccccccchhhhhccccchheeCCCCCCccc---------cC
Confidence 54443221110 0 1222222 22211110000 000011112235677777776643211 11
Q ss_pred cCCCCCCCccEEEEeeec-CCccCcchhhcccCCcEEeEcCCCCCCCCCCCCCCCccceeeccccccceEecccccCCch
Q 002800 677 EGLQVPPNLERLEIFYHR-GNTLSSIFIMSLAKLRSMSLDRCINLEQLPRLGELPSLESLTVRNMRRLEKVGNEFLGIDE 755 (879)
Q Consensus 677 ~~l~~~~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 755 (879)
..+..+++|+.|++.+|. ...+ |..+ .+++|+.|+|++|..+..+|.+ .++|+.|+|+++ .++.++.
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP~------- 863 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLETL-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVPW------- 863 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcCee-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccChH-------
Confidence 234456677777777664 2334 4333 5777777777777766666653 256777777662 3333332
Q ss_pred hhhccccccccccccC-CCCCCcccCCCCCCCcCCCccceeeeccCcccccccccccc-C----CCCCCCCCCccCeeec
Q 002800 756 SRLLRKDEGKVLGTDR-SRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTT-S----TWPHDRLMPRLCSLTI 829 (879)
Q Consensus 756 ~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~-~----~~~~~~~~p~L~~L~l 829 (879)
.+..+.+|+.++++. +.+..++. ....+++|+.|++++|++|+..+..... . .......+|....+.+
T Consensus 864 -si~~l~~L~~L~L~~C~~L~~l~~-----~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f 937 (1153)
T PLN03210 864 -WIEKFSNLSFLDMNGCNNLQRVSL-----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINF 937 (1153)
T ss_pred -HHhcCCCCCEEECCCCCCcCccCc-----ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccc
Confidence 223445566666654 44444433 2346789999999999988765441100 0 0001124667777888
Q ss_pred cCCCCCcCC
Q 002800 830 GFCPKLETL 838 (879)
Q Consensus 830 ~~C~~L~~l 838 (879)
.+|.+|..-
T Consensus 938 ~nC~~L~~~ 946 (1153)
T PLN03210 938 INCFNLDQE 946 (1153)
T ss_pred ccccCCCch
Confidence 899887643
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=4.5e-21 Score=212.41 Aligned_cols=284 Identities=28% Similarity=0.308 Sum_probs=167.7
Q ss_pred EEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEec
Q 002800 450 IKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNL 529 (879)
Q Consensus 450 l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L 529 (879)
++......+|..+.....+..|.+..|. ....+-++..+.-.|++||+++ +.+..+|..|..+.+|+.|++
T Consensus 5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N~---~l~~pl~~~~~~v~L~~l~lsn------n~~~~fp~~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 5 ASDEQLELIPEQILNNEALQILNLRRNS---LLSRPLEFVEKRVKLKSLDLSN------NQISSFPIQITLLSHLRQLNL 75 (1081)
T ss_pred cccccCcccchhhccHHHHHhhhccccc---cccCchHHhhheeeeEEeeccc------cccccCCchhhhHHHHhhccc
Confidence 3344444445555444556666666552 2221223344555599999998 888888988999999999999
Q ss_pred ccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceeeccc-CC
Q 002800 530 SRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVSVG-SD 608 (879)
Q Consensus 530 ~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~-~~ 608 (879)
+.|. +..+|.+++++.+|++|.|.+| .+..+|.++..+++|++|++++|.+..+|.-+..++.+..+....+... ..
T Consensus 76 s~n~-i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~l 153 (1081)
T KOG0618|consen 76 SRNY-IRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRL 153 (1081)
T ss_pred chhh-HhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhh
Confidence 9988 8999988899999999999876 7888999999999999999999988888877777776666655443110 00
Q ss_pred CCcccCccccc-ccccCCCee--EEcccCC---CChhcccccccCCccccceEEEEeccCCCCC---CC------CCchH
Q 002800 609 DDKACKLECLK-SLNHLRGSL--KIKKLGN---VSKDEINKAELGKKENLLALYLSLEKDREKG---ST------NKDDE 673 (879)
Q Consensus 609 ~~~~~~l~~L~-~L~~L~~~L--~i~~l~~---~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~------~~~~~ 673 (879)
+.. .+..+. .++.+.+.+ .+..+.. ..........+..+.+|+.+....|.+.... +. .....
T Consensus 154 g~~--~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l 231 (1081)
T KOG0618|consen 154 GQT--SIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPL 231 (1081)
T ss_pred ccc--cchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcc
Confidence 000 000000 111111111 0111111 0000000123334444444444333322000 00 00000
Q ss_pred hhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCC----------------------CCCCCC-CCCCC
Q 002800 674 DALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCIN----------------------LEQLPR-LGELP 730 (879)
Q Consensus 674 ~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~----------------------~~~lp~-l~~l~ 730 (879)
..+..-..+.+|++++++.+....+ |.|++.+.+|+.|....|.. ++.+|. ++++.
T Consensus 232 ~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~ 310 (1081)
T KOG0618|consen 232 TTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLK 310 (1081)
T ss_pred eeeccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccc
Confidence 1111223456899999999998888 79999999998888876643 223454 55688
Q ss_pred ccceeeccccccceEecc
Q 002800 731 SLESLTVRNMRRLEKVGN 748 (879)
Q Consensus 731 ~L~~L~L~~~~~l~~~~~ 748 (879)
+|++|+|... +|..++.
T Consensus 311 sL~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 311 SLRTLDLQSN-NLPSLPD 327 (1081)
T ss_pred eeeeeeehhc-cccccch
Confidence 9999999763 3444433
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1.4e-21 Score=196.59 Aligned_cols=370 Identities=21% Similarity=0.246 Sum_probs=210.5
Q ss_pred CCCeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccC
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKL 521 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 521 (879)
...+..+.++.+.....|.++..+..+..+.++.+. +. .+|..+..+..|+.|+.++ +.+.++|++++.+
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~---ls-~lp~~i~s~~~l~~l~~s~------n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK---LS-ELPEQIGSLISLVKLDCSS------NELKELPDSIGRL 136 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch---Hh-hccHHHhhhhhhhhhhccc------cceeecCchHHHH
Confidence 344566777777776677777777777777777662 22 3555577777777788777 6777777778887
Q ss_pred CCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCce
Q 002800 522 LHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEF 601 (879)
Q Consensus 522 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~ 601 (879)
..|..|+..+|+ +..+|..++.+..|..|++.+| .+..+|+..-+++.|+||+...|-+..+|+.++.+.+|..|++.
T Consensus 137 ~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 137 LDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence 778888777777 7778877777777777777777 56777766666777888877777777777777777777777665
Q ss_pred eecccCCCCcccCcccccccccCCCeeEEcccCCCChhccccc-ccCCccccceEEEEeccCCCCCCCCCchHhhhcCCC
Q 002800 602 IVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKA-ELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQ 680 (879)
Q Consensus 602 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 680 (879)
.+..... ..+.....|++++ ..... .+..++ ....++++..|+++.|+..+ +...+.
T Consensus 215 ~Nki~~l----Pef~gcs~L~Elh--~g~N~------i~~lpae~~~~L~~l~vLDLRdNklke----------~Pde~c 272 (565)
T KOG0472|consen 215 RNKIRFL----PEFPGCSLLKELH--VGENQ------IEMLPAEHLKHLNSLLVLDLRDNKLKE----------VPDEIC 272 (565)
T ss_pred hcccccC----CCCCccHHHHHHH--hcccH------HHhhHHHHhcccccceeeecccccccc----------CchHHH
Confidence 5544221 1222222333332 00000 111111 22345555555555554421 111222
Q ss_pred CCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCC-------------------------------------C-
Q 002800 681 VPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLE-------------------------------------Q- 722 (879)
Q Consensus 681 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-------------------------------------~- 722 (879)
.+.+|++|++++|.+..+ |..++++ .|+.|.+.+|..-+ .
T Consensus 273 lLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 334455555555555555 4444444 44444444442100 0
Q ss_pred ----CCCCCCCCccceeeccccccceEe--------------------------ccc----------------ccCCchh
Q 002800 723 ----LPRLGELPSLESLTVRNMRRLEKV--------------------------GNE----------------FLGIDES 756 (879)
Q Consensus 723 ----lp~l~~l~~L~~L~L~~~~~l~~~--------------------------~~~----------------~~~~~~~ 756 (879)
.|....+.+.+.|++++-. ++.+ |.. ..+..+.
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 0001112233333333210 1111 110 0112222
Q ss_pred hhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCcccccccc-------------c-cccCC--CCCCCC
Q 002800 757 RLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKY-------------S-VTTST--WPHDRL 820 (879)
Q Consensus 757 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~-------------~-~~~~~--~~~~~~ 820 (879)
.+..+..+..+++++|-+-.+|. .++.+..|+.|+++.+ .++..+. + +..+. ......
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~-----e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPE-----EMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred HHHhhhcceeeecccchhhhcch-----hhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 33344556667777777766665 2335556777777655 3332221 0 01111 123568
Q ss_pred CCccCeeeccCCCCCcCCCC--CCCCCccEEEEeecC
Q 002800 821 MPRLCSLTIGFCPKLETLPD--DYLPQLLDLKIFSCP 855 (879)
Q Consensus 821 ~p~L~~L~l~~C~~L~~lp~--~~l~~L~~L~i~~c~ 855 (879)
|.+|.+|++.+ +.++.+|+ +.+++|++|+++|.|
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 99999999998 79999998 568999999999998
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.5e-20 Score=189.28 Aligned_cols=262 Identities=24% Similarity=0.273 Sum_probs=205.4
Q ss_pred CeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCC
Q 002800 444 NIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLH 523 (879)
Q Consensus 444 ~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~ 523 (879)
.+..+.+.+|++......+.++..+.+|.+..+. .. .+|..++++..++.|+.++ +.+..+|+.++.+..
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~---l~-~lp~aig~l~~l~~l~vs~------n~ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK---LS-QLPAAIGELEALKSLNVSH------NKLSELPEQIGSLIS 115 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccch---hh-hCCHHHHHHHHHHHhhccc------chHhhccHHHhhhhh
Confidence 3556677777776666777888999999998873 33 3677799999999999999 899999999999999
Q ss_pred CCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceee
Q 002800 524 LRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIV 603 (879)
Q Consensus 524 Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 603 (879)
|+.|+.+.|. +.++|++++.+..|+.|+..+| .+..+|.+++++.+|..|++.+|.+..+|+..-.++.|++|++..+
T Consensus 116 l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 116 LVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred hhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh
Confidence 9999999999 9999999999999999999988 7999999999999999999999999999988777999999987666
Q ss_pred cccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCC
Q 002800 604 SVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPP 683 (879)
Q Consensus 604 ~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 683 (879)
-.+..+..... +..|.-| .+..... .. .+.|..|..|+.|+++.|.+. .-.-+.+..++
T Consensus 194 ~L~tlP~~lg~---l~~L~~L-------yL~~Nki-~~-lPef~gcs~L~Elh~g~N~i~---------~lpae~~~~L~ 252 (565)
T KOG0472|consen 194 LLETLPPELGG---LESLELL-------YLRRNKI-RF-LPEFPGCSLLKELHVGENQIE---------MLPAEHLKHLN 252 (565)
T ss_pred hhhcCChhhcc---hhhhHHH-------Hhhhccc-cc-CCCCCccHHHHHHHhcccHHH---------hhHHHHhcccc
Confidence 54333222222 2222211 1111111 11 236888889999998877542 11123345678
Q ss_pred CccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCC-CCCCCCccceeeccccc
Q 002800 684 NLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLP-RLGELPSLESLTVRNMR 741 (879)
Q Consensus 684 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~L~~~~ 741 (879)
+|..|++..|..... |+-+.-+.+|.+|++++|. +..+| .+|++ .|+.|.+.+.+
T Consensus 253 ~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cceeeeccccccccC-chHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 899999999999999 9999999999999999995 55666 59999 89999998754
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-18 Score=192.51 Aligned_cols=101 Identities=26% Similarity=0.352 Sum_probs=69.7
Q ss_pred eeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCC
Q 002800 445 IQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHL 524 (879)
Q Consensus 445 ~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L 524 (879)
+.+|.++++....+|..+..+.+|+.|.++.+. +. ..|....++.+|++|.|.+ +.+..+|.++..+++|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~---i~-~vp~s~~~~~~l~~lnL~~------n~l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY---IR-SVPSSCSNMRNLQYLNLKN------NRLQSLPASISELKNL 116 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhh---Hh-hCchhhhhhhcchhheecc------chhhcCchhHHhhhcc
Confidence 667777777766677777777777777776662 22 2455567777777777775 6777777777777777
Q ss_pred CEEecccCCCCcccCcccccCCCCcEEeccCc
Q 002800 525 RYLNLSRNSKIAELPESLCDLYNLETMELSWC 556 (879)
Q Consensus 525 r~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~ 556 (879)
+||++++|. ...+|..+..+..++.++.++|
T Consensus 117 ~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 117 QYLDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred cccccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 777777777 7777766666666666666655
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=1.8e-14 Score=166.24 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=51.7
Q ss_pred cccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccc
Q 002800 494 CLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLW 573 (879)
Q Consensus 494 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 573 (879)
.-.+|+|++ +.+..+|..+. .+|+.|++++|. ++.+|.. +++|++|++++| .+..+|.. .++|+
T Consensus 202 ~~~~LdLs~------~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~ 265 (788)
T PRK15387 202 GNAVLNVGE------SGLTTLPDCLP--AHITTLVIPDNN-LTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLL 265 (788)
T ss_pred CCcEEEcCC------CCCCcCCcchh--cCCCEEEccCCc-CCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccc
Confidence 455677776 56667776664 367777777776 7777752 467777777776 56666643 35677
Q ss_pred eEecCCcccccCCc
Q 002800 574 HLVNDGTSLSYMPK 587 (879)
Q Consensus 574 ~L~l~~~~l~~lp~ 587 (879)
+|++++|.+..+|.
T Consensus 266 ~L~Ls~N~L~~Lp~ 279 (788)
T PRK15387 266 ELSIFSNPLTHLPA 279 (788)
T ss_pred eeeccCCchhhhhh
Confidence 77777777666654
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=6.7e-12 Score=155.90 Aligned_cols=292 Identities=14% Similarity=0.154 Sum_probs=181.4
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARA 157 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~ 157 (879)
++.+|-|+.-.+.+ ... ...+++.|+|++|.||||++..+.+. ++.++|+++. .+...+...
T Consensus 13 ~~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 45677777555544 332 26789999999999999999998852 2368999886 455667777
Q ss_pred HHHHhccCCCC------------CchhHHHHHHHHHHHhh--CCeeEEEeecccccchHhHH-HHHHhccCCCCCcEEEE
Q 002800 158 ILESLKDGVSS------------DLVEIDTVLQQISHYIQ--GNRFLLVLDDVRSRYFNYWQ-QLMYSLKSGSEGSRILV 222 (879)
Q Consensus 158 i~~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iii 222 (879)
++..+...... ...+...+...+...+. +.+++|||||+...+..... .+...++...++.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777411111 00122233333333333 67899999999876534444 34444444566778999
Q ss_pred Eccchhhh---hhcCccceEeCC----CCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 223 TTCEENVI---NKMGNTRMISLG----TLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 223 TtR~~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
|||...-. .........++. +|+.+|+.++|.......-. .+.+.+|.+.|+|.|+++..++..+
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~--------~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE--------AAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC--------HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99984221 111123355666 99999999999765432211 2336789999999999999988777
Q ss_pred ccCCC-HHHHHHHHhhhhccccc-cCccchhhHH-hhhcCChhHHHHHHhHhccCCCCcccCHHHHHHHHHHcCCcccCC
Q 002800 296 RFKRN-IGEWLNVLKSKIWELKL-ADKEHFLPLL-LSYYDLPSALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEG 372 (879)
Q Consensus 296 ~~~~~-~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~~~ 372 (879)
+.... .... . +.+.. ....+...+. -.++.||++.+..+...|+++ .|+.+- . ..+..
T Consensus 230 ~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l-~-----~~l~~--- 290 (903)
T PRK04841 230 RQNNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDAL-I-----VRVTG--- 290 (903)
T ss_pred hhCCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHH-H-----HHHcC---
Confidence 54421 1111 1 11111 1223555443 347899999999999999986 334222 1 11111
Q ss_pred CccHHHHHHHHHHHHhhccchhhhhcccCCCceeeeccchhHHHHHHHhh
Q 002800 373 RDDTELIGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHNIVHDFAQFLT 422 (879)
Q Consensus 373 ~~~~e~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdli~dla~~~~ 422 (879)
.+.+...+.+|...+++...... .+. +|++|++++++.....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~-~~~---~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDD-SGE---WFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecC-CCC---EEehhHHHHHHHHHHH
Confidence 11246778999999986532211 122 7889999999987654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.6e-13 Score=157.95 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=54.4
Q ss_pred cccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccc
Q 002800 494 CLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLW 573 (879)
Q Consensus 494 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 573 (879)
+..+|++++ ..+..+|..+. .+|+.|+|++|. +..+|..+. .+|++|++++| .+..+|..+. .+|+
T Consensus 179 ~~~~L~L~~------~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~ 244 (754)
T PRK15370 179 NKTELRLKI------LGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQ 244 (754)
T ss_pred CceEEEeCC------CCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-ccccCChhhh--cccc
Confidence 456666666 45666665543 356677777666 666666554 46777777766 4666665543 3566
Q ss_pred eEecCCcccccCCccCCCCCCCCcCCc
Q 002800 574 HLVNDGTSLSYMPKGIERLTCLRTLNE 600 (879)
Q Consensus 574 ~L~l~~~~l~~lp~~i~~l~~L~~L~~ 600 (879)
.|++++|.+..+|..+. ++|+.|++
T Consensus 245 ~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 245 EMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred EEECcCCccCcCChhHh--CCCCEEEC
Confidence 77777766666665442 34555543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=1.1e-12 Score=151.46 Aligned_cols=252 Identities=20% Similarity=0.194 Sum_probs=155.4
Q ss_pred eEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCC
Q 002800 446 QHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLR 525 (879)
Q Consensus 446 r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr 525 (879)
..|+++.+.+..+|..+. ++|+.|.+..|. +.. +|. .+++|++|+|++ |.+..+|.. ..+|+
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~---Lt~-LP~---lp~~Lk~LdLs~------N~LtsLP~l---p~sL~ 265 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTS-LPA---LPPELRTLEVSG------NQLTSLPVL---PPGLL 265 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCc---CCC-CCC---CCCCCcEEEecC------CccCcccCc---ccccc
Confidence 455666666655555543 367777777662 222 332 246788888887 667777643 35677
Q ss_pred EEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceeecc
Q 002800 526 YLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVSV 605 (879)
Q Consensus 526 ~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~ 605 (879)
.|++++|. +..+|.. ..+|+.|++++| .+..+|.. +++|++|++++|.+..+|... .+|+.|.+..+..
T Consensus 266 ~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L 334 (788)
T PRK15387 266 ELSIFSNP-LTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL 334 (788)
T ss_pred eeeccCCc-hhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCCc---ccccccccccCcc
Confidence 88888887 7777753 256777888877 57777753 467888888888777766532 2344443322111
Q ss_pred cCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCc
Q 002800 606 GSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNL 685 (879)
Q Consensus 606 ~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L 685 (879)
..++ . + ..+|+.|+++.|.+...+ . .+++|
T Consensus 335 ----------~~LP------------------------~-l--p~~Lq~LdLS~N~Ls~LP-----------~--lp~~L 364 (788)
T PRK15387 335 ----------TSLP------------------------T-L--PSGLQELSVSDNQLASLP-----------T--LPSEL 364 (788)
T ss_pred ----------cccc------------------------c-c--ccccceEecCCCccCCCC-----------C--CCccc
Confidence 0000 0 0 136778888877653211 1 13578
Q ss_pred cEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCCCCCCCccceeeccccccceEecccccCCchhhhccccccc
Q 002800 686 ERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPRLGELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGK 765 (879)
Q Consensus 686 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 765 (879)
+.|.+.+|....+ |.. .++|+.|+|++|. +..+|.+ .++|+.|+++++. ++.++.. ...++
T Consensus 365 ~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~-Lt~LP~l--~s~L~~LdLS~N~-LssIP~l-----------~~~L~ 425 (788)
T PRK15387 365 YKLWAYNNRLTSL-PAL---PSGLKELIVSGNR-LTSLPVL--PSELKELMVSGNR-LTSLPML-----------PSGLL 425 (788)
T ss_pred ceehhhccccccC-ccc---ccccceEEecCCc-ccCCCCc--ccCCCEEEccCCc-CCCCCcc-----------hhhhh
Confidence 8888888877766 432 3578888888884 5566654 3678888888753 4444321 12456
Q ss_pred cccccCCCCCCcccCCCCCCCcCCCccceeeeccC
Q 002800 766 VLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKM 800 (879)
Q Consensus 766 ~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 800 (879)
.++++.|.++.++. .+..+++|+.|+|++|
T Consensus 426 ~L~Ls~NqLt~LP~-----sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 426 SLSVYRNQLTRLPE-----SLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhhccCcccccCh-----HHhhccCCCeEECCCC
Confidence 67778888876654 2446788888888887
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=9.7e-13 Score=153.17 Aligned_cols=124 Identities=22% Similarity=0.336 Sum_probs=77.9
Q ss_pred CeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCC
Q 002800 444 NIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLH 523 (879)
Q Consensus 444 ~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~ 523 (879)
+...+.+....+..+|..+. ++|+.|.+.+|. +.. +|..+ +++|+.|+|++ +.+..+|..+. .+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~---Lts-LP~~l--~~nL~~L~Ls~------N~LtsLP~~l~--~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNE---LKS-LPENL--QGNIKTLYANS------NQLTSIPATLP--DT 242 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCC---CCc-CChhh--ccCCCEEECCC------CccccCChhhh--cc
Confidence 34556666665555554442 467777777662 222 33322 24677777777 56667776543 36
Q ss_pred CCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccC
Q 002800 524 LRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGI 589 (879)
Q Consensus 524 Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i 589 (879)
|+.|+|++|. +..+|..+. .+|++|++++| .+..+|..+. .+|++|++++|.++.+|..+
T Consensus 243 L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l 302 (754)
T PRK15370 243 IQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHL 302 (754)
T ss_pred ccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccc
Confidence 7777777777 777776654 46777777766 5667776554 46777777777776666543
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.3e-10 Score=129.22 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=177.0
Q ss_pred ccccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccce--EEEEEee--cch
Q 002800 76 ISVVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSK--RIWVSAS--YPE 151 (879)
Q Consensus 76 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~s--~~~ 151 (879)
.+...|..++||++++++|...+...-. +.....+.|+|++|+|||++++.++++ ....... .+++.+. .+.
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCH
Confidence 3444567899999999999999855321 123455789999999999999999984 3222222 3444443 566
Q ss_pred HHHHHHHHHHhccCC-CCCchhHHHHHHHHHHHhh--CCeeEEEeecccccc----hHhHHHHHHhccCCCCCcE--EEE
Q 002800 152 IRIARAILESLKDGV-SSDLVEIDTVLQQISHYIQ--GNRFLLVLDDVRSRY----FNYWQQLMYSLKSGSEGSR--ILV 222 (879)
Q Consensus 152 ~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iii 222 (879)
..++..++.++.... +....+.+++.+.+.+.+. +++.+||||+++... .+.+..+...+.. .++++ ||.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~ 178 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEE
Confidence 788899999987211 2222345666677777765 456899999998642 2233334333322 23333 566
Q ss_pred EccchhhhhhcC-------ccceEeCCCCCHHhHHHHHHHHhccCCCCc-hhhHHHHHHHHHHHhhcCCChhHHHHHhhh
Q 002800 223 TTCEENVINKMG-------NTRMISLGTLSEEASWSLFCLVAFYWRRSD-EEFQELEHIGRQVIRKCKNLPLAVKVIGSH 294 (879)
Q Consensus 223 TtR~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~-~~~~~l~~~~~~i~~~~~glPLai~~~~~~ 294 (879)
++....+..... ....+.+.|++.++..+++...+...-... -....++.+++......|..+.|+.++-..
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 666544333221 134689999999999999998763221110 112223333444433456677787766432
Q ss_pred c--c---c--CCCHHHHHHHHhhhhccccccCccchhhHHhhhcCChhHHHHHHhHhccCCC--CcccCHHHHHHH--HH
Q 002800 295 L--R---F--KRNIGEWLNVLKSKIWELKLADKEHFLPLLLSYYDLPSALRKCFLYCAIFPK--NYEIEKDRLIKL--WM 363 (879)
Q Consensus 295 l--~---~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~li~~--W~ 363 (879)
. + . .-+.++...+.+... .....-.+..||.+.|..+..++-.-+ ...+...++... .+
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l 328 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKEL 328 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 2 1 1 124556655555431 122345678999998887665553321 134555555543 22
Q ss_pred HcCCcccCCCccHHHHHHHHHHHHhhccchhhhh
Q 002800 364 AQGYLKVEGRDDTELIGEEFFESLASHSLLHDFQ 397 (879)
Q Consensus 364 a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~ 397 (879)
++.+-. ...+. ..-..|+.+|.+.+++....
T Consensus 329 ~~~~~~--~~~~~-~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 329 CEELGY--EPRTH-TRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred HHHcCC--CcCcH-HHHHHHHHHHHhcCCeEEEE
Confidence 221100 00112 23456899999999998654
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=2.7e-13 Score=160.18 Aligned_cols=322 Identities=25% Similarity=0.286 Sum_probs=202.0
Q ss_pred cCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCccccc--ccccCc-ccccCCCCCEEecccCCCCcccC
Q 002800 463 YNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNV--IKRVPR-GIRKLLHLRYLNLSRNSKIAELP 539 (879)
Q Consensus 463 ~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~--l~~lp~-~i~~L~~Lr~L~L~~~~~i~~lP 539 (879)
.+....|...+.++.... ++. -.+.+.|++|-+.+ +. +..++. .+..+++|++|||++|..+..+|
T Consensus 520 ~~~~~~rr~s~~~~~~~~----~~~-~~~~~~L~tLll~~------n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH----IAG-SSENPKLRTLLLQR------NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cchhheeEEEEeccchhh----ccC-CCCCCccceEEEee------cchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 344677888777763221 122 12444799999887 43 566654 47789999999999999899999
Q ss_pred cccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccc-cCCccCCCCCCCCcCCceeecccCCCCcccCcccc
Q 002800 540 ESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLS-YMPKGIERLTCLRTLNEFIVSVGSDDDKACKLECL 618 (879)
Q Consensus 540 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L 618 (879)
.+|++|-+||+|+++++ .+..+|.++++|.+|.||++..+... .+|..+..|++|++|.++.... ......+.++
T Consensus 589 ~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---~~~~~~l~el 664 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---SNDKLLLKEL 664 (889)
T ss_pred hHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc---ccchhhHHhh
Confidence 99999999999999998 79999999999999999999988743 4445456699999998776542 1144455556
Q ss_pred cccccCCCeeEEcccCCCChhcccccccCCccccce----EEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeec
Q 002800 619 KSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLA----LYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHR 694 (879)
Q Consensus 619 ~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 694 (879)
.+|..|. .+.+..... .....+..+..|.+ +.+..+. .......+..+.+|+.|.+.++.
T Consensus 665 ~~Le~L~-~ls~~~~s~-----~~~e~l~~~~~L~~~~~~l~~~~~~----------~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 665 ENLEHLE-NLSITISSV-----LLLEDLLGMTRLRSLLQSLSIEGCS----------KRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred hcccchh-hheeecchh-----HhHhhhhhhHHHHHHhHhhhhcccc----------cceeecccccccCcceEEEEcCC
Confidence 5555555 443322111 00111222222322 2221111 12233455667889999999887
Q ss_pred CCccCcchhh-----c-ccCCcEEeEcCCCCCCCCCCCCCCCccceeeccccccceEecccccCCchhhhcccccccccc
Q 002800 695 GNTLSSIFIM-----S-LAKLRSMSLDRCINLEQLPRLGELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLG 768 (879)
Q Consensus 695 ~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 768 (879)
+......|.. . |+++..+.+.+|.....+.+....|+|+.|.+..|..++.+-+..-.... +..
T Consensus 729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--------l~~-- 798 (889)
T KOG4658|consen 729 ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--------LKE-- 798 (889)
T ss_pred CchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--------ccc--
Confidence 7543223322 2 66777777778876666666556789999999998877655432211100 000
Q ss_pred ccCCCCCCcccCCCCCCCcCCCcccee-eeccCccccccccccccCCCCCCCCCCccCeeeccCCCCCcCCCCCCCCCcc
Q 002800 769 TDRSRSSGIEESKPSKPFVAFPRLKSL-EFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLETLPDDYLPQLL 847 (879)
Q Consensus 769 l~~~~~~~~~~~~~~~~~~~fp~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~L~~lp~~~l~~L~ 847 (879)
....|++++.+ .+.+.++++.+.. .-..+++|+.+.+..||++..+|. +.
T Consensus 799 ----------------~i~~f~~~~~l~~~~~l~~l~~i~~--------~~l~~~~l~~~~ve~~p~l~~~P~-----~~ 849 (889)
T KOG4658|consen 799 ----------------LILPFNKLEGLRMLCSLGGLPQLYW--------LPLSFLKLEELIVEECPKLGKLPL-----LS 849 (889)
T ss_pred ----------------EEecccccccceeeecCCCCceeEe--------cccCccchhheehhcCcccccCcc-----cc
Confidence 01244555555 3555555544433 112466677888888888777665 45
Q ss_pred EEEEeec
Q 002800 848 DLKIFSC 854 (879)
Q Consensus 848 ~L~i~~c 854 (879)
++.+.+|
T Consensus 850 ~~~i~~~ 856 (889)
T KOG4658|consen 850 TLTIVGC 856 (889)
T ss_pred ccceecc
Confidence 5566665
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=2.7e-14 Score=127.85 Aligned_cols=139 Identities=28% Similarity=0.379 Sum_probs=96.6
Q ss_pred CCCeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCccccccc--ccCcccc
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIK--RVPRGIR 519 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~--~lp~~i~ 519 (879)
..++..+.+.+|.+...|.++..+++||.|.+.-+. ...+|.-|+.++.|.+|||.+ +++. .+|..+.
T Consensus 55 l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr----l~~lprgfgs~p~levldlty------nnl~e~~lpgnff 124 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR----LNILPRGFGSFPALEVLDLTY------NNLNENSLPGNFF 124 (264)
T ss_pred hhhhhhhhcccchhhhcChhhhhchhhhheecchhh----hhcCccccCCCchhhhhhccc------cccccccCCcchh
Confidence 445566666666666667777777777777765542 223455577777777777776 4443 3677777
Q ss_pred cCCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCC
Q 002800 520 KLLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERL 592 (879)
Q Consensus 520 ~L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l 592 (879)
.|..||.|.|+.|. ...+|..+++|++||.|.++.| .+-++|..++.|+.|+.|.+.+|.++.+|+.++++
T Consensus 125 ~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 125 YMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 77777777777777 7777777777777777777777 56677777777777777777777777777766554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=3.7e-14 Score=126.96 Aligned_cols=132 Identities=24% Similarity=0.355 Sum_probs=92.7
Q ss_pred ccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcc
Q 002800 462 VYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPES 541 (879)
Q Consensus 462 ~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~ 541 (879)
+.++++.+.|.++.+ .+.. .|..+..+++|++|++.+ +.++++|.+|+.|+.||.|++.-|. +..+|..
T Consensus 29 Lf~~s~ITrLtLSHN---Kl~~-vppnia~l~nlevln~~n------nqie~lp~~issl~klr~lnvgmnr-l~~lprg 97 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN---KLTV-VPPNIAELKNLEVLNLSN------NQIEELPTSISSLPKLRILNVGMNR-LNILPRG 97 (264)
T ss_pred ccchhhhhhhhcccC---ceee-cCCcHHHhhhhhhhhccc------chhhhcChhhhhchhhhheecchhh-hhcCccc
Confidence 445566666666665 2332 344467777777777777 7777777777777778877777777 7777777
Q ss_pred cccCCCCcEEeccCcccc-cccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceeec
Q 002800 542 LCDLYNLETMELSWCISL-KRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVS 604 (879)
Q Consensus 542 i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~ 604 (879)
+|.++-|++|||.+|..- ..+|..|..++.||.|++++|.+..+|+.++++++||.|.+-.+.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence 777777888877776322 347777777777777777777777777777777777777655443
No 24
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=9.5e-10 Score=121.12 Aligned_cols=304 Identities=11% Similarity=0.077 Sum_probs=172.9
Q ss_pred cccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccc------eEEEEEee--
Q 002800 77 SVVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFS------KRIWVSAS-- 148 (879)
Q Consensus 77 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~------~~~wv~~s-- 148 (879)
+...|..++||++++++|...|...-. +.....+.|+|++|+|||++++.+++. ...... ..+|+.+.
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCC
Confidence 334456899999999999999875321 123456889999999999999999984 221111 24555555
Q ss_pred cchHHHHHHHHHHhcc--C-CCCCchhHHHHHHHHHHHhh--CCeeEEEeecccccc---hHhHHHHHHhc-cCCC--CC
Q 002800 149 YPEIRIARAILESLKD--G-VSSDLVEIDTVLQQISHYIQ--GNRFLLVLDDVRSRY---FNYWQQLMYSL-KSGS--EG 217 (879)
Q Consensus 149 ~~~~~~~~~i~~~l~~--~-~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~g 217 (879)
.+...++..++.++.. . .+....+.++....+.+.+. +++++||||+++... .+....+.... .... ..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 5667889999998841 1 11122234445555666553 568899999998751 11122222221 1111 23
Q ss_pred cEEEEEccchhhhhhcC-------ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH-H
Q 002800 218 SRILVTTCEENVINKMG-------NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV-K 289 (879)
Q Consensus 218 s~iiiTtR~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai-~ 289 (879)
..+|.+|........+. ....+.+.|++.+|..+++..++..........++..+.+.+++....|-|-.+ .
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 34455555443322111 125689999999999999998864211111123334445666777777887443 3
Q ss_pred HHhhhc--c-----cCCCHHHHHHHHhhhhccccccCccchhhHHhhhcCChhHHHHHHhHhccCC--CCcccCHHHHHH
Q 002800 290 VIGSHL--R-----FKRNIGEWLNVLKSKIWELKLADKEHFLPLLLSYYDLPSALRKCFLYCAIFP--KNYEIEKDRLIK 360 (879)
Q Consensus 290 ~~~~~l--~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~ 360 (879)
++-... + ..-+.++.+.+.+... .....-++..||.+.|..+..++..- .+..+...++..
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~ 315 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYE 315 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 322111 1 1124444444444321 12234466789998887666554221 344466666666
Q ss_pred HHH--HcCCcccCCCccHHHHHHHHHHHHhhccchhhhh
Q 002800 361 LWM--AQGYLKVEGRDDTELIGEEFFESLASHSLLHDFQ 397 (879)
Q Consensus 361 ~W~--a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~ 397 (879)
.+- ++. +.. ....+.....++..|...+++....
T Consensus 316 ~y~~~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 316 VYKEVCED-IGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 432 221 111 0123455667789999999988654
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.28 E-value=2e-10 Score=120.64 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=114.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCCCchhHHHHHHHHH----HH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVEIDTVLQQIS----HY 183 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~----~~ 183 (879)
..++.|+|++|+||||+++.+++.... ..+ ..+|+... .+..++++.++..++ .... ..+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG-~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLVNTRVDAEDLLRMVAADFG-LETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeeeCCCCCHHHHHHHHHHHcC-CCCC-CCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999984321 121 23344433 677788889988876 2222 122222223333 32
Q ss_pred h-hCCeeEEEeecccccchHhHHHHHHhccC---CCCCcEEEEEccchhhhhhcC----------ccceEeCCCCCHHhH
Q 002800 184 I-QGNRFLLVLDDVRSRYFNYWQQLMYSLKS---GSEGSRILVTTCEENVINKMG----------NTRMISLGTLSEEAS 249 (879)
Q Consensus 184 l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iiiTtR~~~v~~~~~----------~~~~~~l~~L~~~e~ 249 (879)
. .+++.++|+||++......++.+...... ......|++|... .....+. ....+++.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2 57889999999999776677766543221 1223345565543 2221111 134678999999999
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 250 WSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 250 ~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
.+++...+...+.. ....-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99998776433211 0011124568899999999999999888776
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=2.2e-13 Score=138.02 Aligned_cols=284 Identities=19% Similarity=0.185 Sum_probs=171.2
Q ss_pred CccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCccccccccc-CcccccCCCCCEEecccCCCCcccCc-cccc
Q 002800 467 RLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRV-PRGIRKLLHLRYLNLSRNSKIAELPE-SLCD 544 (879)
Q Consensus 467 ~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~Lr~L~L~~~~~i~~lP~-~i~~ 544 (879)
....+.+..| .+...++.+|+.++.||.|||++ |.|+.+ |..+..|..|-.|-+.+++.|+.+|+ .+++
T Consensus 68 ~tveirLdqN---~I~~iP~~aF~~l~~LRrLdLS~------N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 68 ETVEIRLDQN---QISSIPPGAFKTLHRLRRLDLSK------NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cceEEEeccC---CcccCChhhccchhhhceecccc------cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 3445556555 45556678899999999999999 888888 88899999988888888444999996 4789
Q ss_pred CCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCc-cCCCCCCCCcCCceeecccCCCCcccCccccccccc
Q 002800 545 LYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPK-GIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNH 623 (879)
Q Consensus 545 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~ 623 (879)
|..||-|.+.-|..-......+..|++|+.|.+.+|.+..++. .+..+.++++++...+.. . ..+.++.+.....
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~--i--cdCnL~wla~~~a 214 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF--I--CDCNLPWLADDLA 214 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc--c--cccccchhhhHHh
Confidence 9999999998884334445678899999999999999888887 488888899887655443 1 2333332221110
Q ss_pred CCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcchh
Q 002800 624 LRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFI 703 (879)
Q Consensus 624 L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~ 703 (879)
. .+..++.........+......... .......+... ...+....+.....|...|
T Consensus 215 ~-----------------~~ietsgarc~~p~rl~~~Ri~q~~-----a~kf~c~~esl--~s~~~~~d~~d~~cP~~cf 270 (498)
T KOG4237|consen 215 M-----------------NPIETSGARCVSPYRLYYKRINQED-----ARKFLCSLESL--PSRLSSEDFPDSICPAKCF 270 (498)
T ss_pred h-----------------chhhcccceecchHHHHHHHhcccc-----hhhhhhhHHhH--HHhhccccCcCCcChHHHH
Confidence 0 0111122211111112111110000 00000000000 0111111222222323446
Q ss_pred hcccCCcEEeEcCCCCCCCCC--CCCCCCccceeeccccccceEecccccCCchhhhccccccccccccCCCCCCcccCC
Q 002800 704 MSLAKLRSMSLDRCINLEQLP--RLGELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLGTDRSRSSGIEESK 781 (879)
Q Consensus 704 ~~l~~L~~L~L~~~~~~~~lp--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 781 (879)
..+++|++|+|++|. ++.+. .+.++..|+.|.|.. ++++.+. ...+.++..|+.++|..|+++.+.+.
T Consensus 271 ~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~-------~~~f~~ls~L~tL~L~~N~it~~~~~- 340 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTR-NKLEFVS-------SGMFQGLSGLKTLSLYDNQITTVAPG- 340 (498)
T ss_pred hhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCc-chHHHHH-------HHhhhccccceeeeecCCeeEEEecc-
Confidence 789999999999985 44443 377888999999987 3344433 23345566677788888887766542
Q ss_pred CCCCCcCCCccceeeeccC
Q 002800 782 PSKPFVAFPRLKSLEFQKM 800 (879)
Q Consensus 782 ~~~~~~~fp~L~~L~l~~~ 800 (879)
.+...-+|.+|.+-.+
T Consensus 341 ---aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 341 ---AFQTLFSLSTLNLLSN 356 (498)
T ss_pred ---cccccceeeeeehccC
Confidence 1233445666666543
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.21 E-value=1e-10 Score=120.27 Aligned_cols=193 Identities=17% Similarity=0.182 Sum_probs=101.3
Q ss_pred eeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHH----
Q 002800 84 VIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAI---- 158 (879)
Q Consensus 84 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i---- 158 (879)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+. ....-..++|+... .........+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 799999999999999764 3567889999999999999999983 32221133444332 2222222222
Q ss_pred ----------HHHhccCCCC------CchhHHHHHHHHHHHhh--CCeeEEEeecccccc------hHhHHHHHHhccC-
Q 002800 159 ----------LESLKDGVSS------DLVEIDTVLQQISHYIQ--GNRFLLVLDDVRSRY------FNYWQQLMYSLKS- 213 (879)
Q Consensus 159 ----------~~~l~~~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~- 213 (879)
...+. .... ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 73 SLADELSEALGISIP-SITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHCHCHHHHHHHCC-TSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhcc-cccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11211 1111 11222222333333333 445999999997754 2222334433333
Q ss_pred --CCCCcEEEEEccchhhhhh--------cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCC
Q 002800 214 --GSEGSRILVTTCEENVINK--------MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKN 283 (879)
Q Consensus 214 --~~~gs~iiiTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~g 283 (879)
..+.+.|+++|. ..+... .+....+.+++|+.+++++++....-.. . .. +.-++..++|...+||
T Consensus 152 ~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~--~~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 152 LSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I--KL-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp ---TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHHHHHHHHHHTT
T ss_pred cccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h--cc-cCCHHHHHHHHHHhCC
Confidence 334444444444 433322 2234459999999999999999865433 1 11 1113446899999999
Q ss_pred ChhHHHH
Q 002800 284 LPLAVKV 290 (879)
Q Consensus 284 lPLai~~ 290 (879)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9998864
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.18 E-value=2.5e-10 Score=122.83 Aligned_cols=262 Identities=15% Similarity=0.086 Sum_probs=143.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
.+|+|+++.++.+..++..... .+.....+.|+|++|+||||+|+.+++. ....+ .++..+ ......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGPALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecccccChHHHHHHHH
Confidence 5799999999999888864211 1124557789999999999999999983 33222 122222 111111222222
Q ss_pred HhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccC-------------------CCCCcEEE
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKS-------------------GSEGSRIL 221 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~ii 221 (879)
.+ ++.-+|++|+++.......+.+...+.. -.+.+-|.
T Consensus 99 ~l-----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 99 NL-----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred hc-----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 22 1233555666654322222222221111 01234566
Q ss_pred EEccchhhhhhcC--ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCC
Q 002800 222 VTTCEENVINKMG--NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKR 299 (879)
Q Consensus 222 iTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~ 299 (879)
.|+|...+...+. ....+++++++.++..+++.+.+...+.. .. .+.+..|++.|+|.|-.+..+...+
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~---~~~~~~ia~~~~G~pR~a~~~l~~~---- 226 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--ID---EEGALEIARRSRGTPRIANRLLRRV---- 226 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cC---HHHHHHHHHHcCCCchHHHHHHHHH----
Confidence 6777544433221 13468999999999999999887654432 22 3458899999999996554444332
Q ss_pred CHHHHHHHHhhhhcccccc-CccchhhHHhhhcCChhHHHHHHh-HhccCCCCcccCHHHHHHHHHHcCCcccCCCccHH
Q 002800 300 NIGEWLNVLKSKIWELKLA-DKEHFLPLLLSYYDLPSALRKCFL-YCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDDTE 377 (879)
Q Consensus 300 ~~~~w~~~~~~~~~~~~~~-~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e 377 (879)
..|....... ..... -......+...|..|++..+..+. ....|+.+ .+..+.+.... . .+ .
T Consensus 227 --~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g----~~-~ 290 (328)
T PRK00080 227 --RDFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G----EE-R 290 (328)
T ss_pred --HHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C----CC-c
Confidence 1222111100 00000 012334456777889888888775 66667655 45554443322 1 11 1
Q ss_pred HHHHHHHH-HHhhccchhhhh
Q 002800 378 LIGEEFFE-SLASHSLLHDFQ 397 (879)
Q Consensus 378 ~~~~~~~~-~L~~~sll~~~~ 397 (879)
+.++..+. .|++.+|++...
T Consensus 291 ~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 291 DTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred chHHHHhhHHHHHcCCcccCC
Confidence 22333344 889999986443
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=8.3e-10 Score=118.13 Aligned_cols=276 Identities=16% Similarity=0.091 Sum_probs=141.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
.+|||+++.++.|..++..... .......+.++|++|+|||+||+.+++. ....+ ..+..+ ......+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchhHHHHHH
Confidence 4799999999999998864321 1123456789999999999999999983 33222 112221 111111222222
Q ss_pred HhccCCCCCchhH----HHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhhhcC--
Q 002800 161 SLKDGVSSDLVEI----DTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINKMG-- 234 (879)
Q Consensus 161 ~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~-- 234 (879)
.+....-.-.++. ....+.+...+.+.+..+|+|+.... ..| .. ...+.+-|.+||+...+...+.
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~---~~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RL---DLPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---ee---cCCCeEEEEecCCccccCHHHHhh
Confidence 2220000000000 01122233333333444444443221 001 00 1122455666777654433221
Q ss_pred ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCHHHHHHHHhhhhcc
Q 002800 235 NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGEWLNVLKSKIWE 314 (879)
Q Consensus 235 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 314 (879)
....+++++++.+|..+++.+.+..... ... .+....|++.|+|.|-.+..++..+ |..........
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1346799999999999999988764332 122 3446789999999997665444432 11110000000
Q ss_pred cccc-CccchhhHHhhhcCChhHHHHHHh-HhccCCCCcccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHH-HHhhcc
Q 002800 315 LKLA-DKEHFLPLLLSYYDLPSALRKCFL-YCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDDTELIGEEFFE-SLASHS 391 (879)
Q Consensus 315 ~~~~-~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~-~L~~~s 391 (879)
.... -......+...|..++++.+..+. .++.++.+ .+..+.+-... | .....++..+. .|++++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHHcC
Confidence 0000 011222245678889988887666 55666533 44443333222 1 11223455566 699999
Q ss_pred chhhh
Q 002800 392 LLHDF 396 (879)
Q Consensus 392 ll~~~ 396 (879)
|+...
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99643
No 30
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=9.6e-10 Score=106.23 Aligned_cols=141 Identities=21% Similarity=0.307 Sum_probs=87.3
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccc----cceEEEEEee-cch----HHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTH----FSKRIWVSAS-YPE----IRIARAILESLKDGVSSDLVEIDTVLQQI 180 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s-~~~----~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 180 (879)
|++.|+|.+|+||||+++.++........ +...+|+... ... ..+...+..+.. .. ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~---~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLP-ES---IAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhc-cc---hhhhHHHHHHH
Confidence 57899999999999999999974322222 3456666665 111 133333333333 11 11111111111
Q ss_pred HHHhhCCeeEEEeecccccch--H-----hHHHHH-HhccC-CCCCcEEEEEccchhh---hhhcCccceEeCCCCCHHh
Q 002800 181 SHYIQGNRFLLVLDDVRSRYF--N-----YWQQLM-YSLKS-GSEGSRILVTTCEENV---INKMGNTRMISLGTLSEEA 248 (879)
Q Consensus 181 ~~~l~~k~~LlVlDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~iiiTtR~~~v---~~~~~~~~~~~l~~L~~~e 248 (879)
. -..+++++|+|+++.... . .+..+. ..+.. ..++.+||||+|.... .........+++.+|++++
T Consensus 77 ~--~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 L--EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred H--HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 257899999999987421 1 133333 33333 3678999999999665 3334455689999999999
Q ss_pred HHHHHHHH
Q 002800 249 SWSLFCLV 256 (879)
Q Consensus 249 ~~~Lf~~~ 256 (879)
..+++.+.
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99998764
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.02 E-value=9.1e-09 Score=115.71 Aligned_cols=296 Identities=19% Similarity=0.207 Sum_probs=186.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARA 157 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~ 157 (879)
+...|-|. +|.+.|.... +.|.+.|..|+|.|||||+.++.. +. ..=..+.|++.. .+...+...
T Consensus 18 ~~~~v~R~----rL~~~L~~~~-----~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRAN-----DYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccH----HHHHHHhcCC-----CceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHH
Confidence 34555555 4555555443 789999999999999999999975 22 223468999988 777888888
Q ss_pred HHHHhccCCCCC------------chhHHHHHHHHHHHhh--CCeeEEEeecccccchHhHH-HHHHhccCCCCCcEEEE
Q 002800 158 ILESLKDGVSSD------------LVEIDTVLQQISHYIQ--GNRFLLVLDDVRSRYFNYWQ-QLMYSLKSGSEGSRILV 222 (879)
Q Consensus 158 i~~~l~~~~~~~------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iii 222 (879)
++..+..-.+.. ..+...+.+.+...+. .++..+||||..-....... .+...+....++-..|+
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 888887322211 1233344555555443 56899999998653222233 34444455667889999
Q ss_pred Eccchhh---hhhcCccceEeCC----CCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 223 TTCEENV---INKMGNTRMISLG----TLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 223 TtR~~~v---~~~~~~~~~~~l~----~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
|||+..- ++.--.+..++++ .|+.+|+.++|.......-+ +.-.+.+.+...|=+-|+..++-.+
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld--------~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD--------AADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC--------hHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999642 2222223334443 48999999999876522211 2236789999999999999999888
Q ss_pred ccCCCHHHHHHHHhhhhccccccCccchh-hHHhhhcCChhHHHHHHhHhccCCCCcccCHHHHHHHHHHcCCcccCCCc
Q 002800 296 RFKRNIGEWLNVLKSKIWELKLADKEHFL-PLLLSYYDLPSALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRD 374 (879)
Q Consensus 296 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~ 374 (879)
+.+.+.+.-...+. +.+.-+.. ...=-++.||+++|..++-+|+++.= . ..|+.. -
T Consensus 238 ~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~------------L 294 (894)
T COG2909 238 RNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNA------------L 294 (894)
T ss_pred cCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHH------------H
Confidence 74443333222222 10001111 11223578999999999999988531 1 122221 1
Q ss_pred cHHHHHHHHHHHHhhccchhhhhcccCCCceeeeccchhHHHHHHHhhc
Q 002800 375 DTELIGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHNIVHDFAQFLTK 423 (879)
Q Consensus 375 ~~e~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdli~dla~~~~~ 423 (879)
+-++-|...+++|..++++-..-.++ +. +|+.|.+..|+.+.-..
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~-~~---WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDE-GQ---WFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCC-Cc---eeehhHHHHHHHHhhhc
Confidence 22345677899999999876433221 33 89999999998765433
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=1.9e-11 Score=124.28 Aligned_cols=139 Identities=21% Similarity=0.231 Sum_probs=118.2
Q ss_pred CccccCCCCCCCeeEEEEEecccCCCc-ccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccc
Q 002800 433 GFEMCPLESNENIQHLMIKFETERKFP-TSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVI 511 (879)
Q Consensus 433 ~~~~~~~~~~~~~r~L~l~~~~~~~~~-~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 511 (879)
+...+|-..+.....|.+..|.+..+| .+|..+++||.|+++.| .+..+-|+.|.+++.|-.|-+.+ .+.|
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N---~Is~I~p~AF~GL~~l~~Lvlyg-----~NkI 128 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN---NISFIAPDAFKGLASLLSLVLYG-----NNKI 128 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcccCChhhccchhhhceeccccc---chhhcChHhhhhhHhhhHHHhhc-----CCch
Confidence 455677777999999999999998855 57899999999999998 56666789999999988887776 4899
Q ss_pred cccC-cccccCCCCCEEecccCCCCcccC-cccccCCCCcEEeccCcccccccch-hhhcccccceEecCCcc
Q 002800 512 KRVP-RGIRKLLHLRYLNLSRNSKIAELP-ESLCDLYNLETMELSWCISLKRLPQ-RMGQLINLWHLVNDGTS 581 (879)
Q Consensus 512 ~~lp-~~i~~L~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 581 (879)
+++| ..+++|..|+-|.+.-|+ +.-++ ..+..|++|..|.++.| .+..++. .+..+..++++.+..|.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 9998 467999999999999998 66655 56889999999999998 7888887 68889999999988775
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.93 E-value=1.6e-07 Score=106.63 Aligned_cols=213 Identities=10% Similarity=0.113 Sum_probs=125.5
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccc---ccccc--eEEEEEee--cchH
Q 002800 80 DSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV---KTHFS--KRIWVSAS--YPEI 152 (879)
Q Consensus 80 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~s--~~~~ 152 (879)
.|..+.|||+|+++|...|...-. +.....++.|+|++|.|||++++.|.+..+. ..... .+++|.+. .+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 356899999999999998875422 1123457789999999999999999873211 11122 14455544 5677
Q ss_pred HHHHHHHHHhccCCCCCchhHHHHHHHHHHHhh---CCeeEEEeecccccchHhHHHHHHhccC-CCCCcEEEE--Eccc
Q 002800 153 RIARAILESLKDGVSSDLVEIDTVLQQISHYIQ---GNRFLLVLDDVRSRYFNYWQQLMYSLKS-GSEGSRILV--TTCE 226 (879)
Q Consensus 153 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iii--TtR~ 226 (879)
.++..|..++....+..........+.+...+. +...+||||+|+......-+.|...+.+ ...+++|+| +|.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 888889888852333333333344555555442 2245899999986421111223333332 234556544 3332
Q ss_pred hh--------hhhhcCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 227 EN--------VINKMGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 227 ~~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
.+ +...++ ...+...|++.++-.+++..++...... -....++-+|+.++...|-.-.||.++-...
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gV-LdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEI-IDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 22 112222 2346779999999999999988643211 1233344455555555566667776665444
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.90 E-value=4.2e-08 Score=117.12 Aligned_cols=287 Identities=16% Similarity=0.178 Sum_probs=171.0
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEE---EEE----ee-cchHHH
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRI---WVS----AS-YPEIRI 154 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~----~s-~~~~~~ 154 (879)
.++||+.+.+.|.+.+.+... ....++.+.|..|||||+|+++|.. .+.+.+...+ +-. .+ ....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 379999999999999987643 3556999999999999999999998 4444321111 110 11 334455
Q ss_pred HHHHHHHhccCCCCC----------------------------------------chhHH-----HHHHHHHHHhh-CCe
Q 002800 155 ARAILESLKDGVSSD----------------------------------------LVEID-----TVLQQISHYIQ-GNR 188 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~----------------------------------------~~~~~-----~~~~~l~~~l~-~k~ 188 (879)
+++++.++....... ....+ .....+..... .++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 566665553111000 00000 11122223333 459
Q ss_pred eEEEeecccccchHhHHHHHHhccCCCC----CcEEEE--Eccch--hhhhhcCccceEeCCCCCHHhHHHHHHHHhccC
Q 002800 189 FLLVLDDVRSRYFNYWQQLMYSLKSGSE----GSRILV--TTCEE--NVINKMGNTRMISLGTLSEEASWSLFCLVAFYW 260 (879)
Q Consensus 189 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~iii--TtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 260 (879)
.++|+||+.+.|....+-+......... -..|.. |.+.. .+.........+.+.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999988776666665544433221 112322 22222 122222345789999999999999998776442
Q ss_pred CCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccC------CCHHHHHHHHhhhhccccccCccchhhHHhhhcCCh
Q 002800 261 RRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFK------RNIGEWLNVLKSKIWELKLADKEHFLPLLLSYYDLP 334 (879)
Q Consensus 261 ~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~ 334 (879)
... ..+....|+++..|+|+.+.-+-..+... .+...|..-..+.. ..... +.+...+..-.+.||
T Consensus 236 ~~~------~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-~~~~~-~~vv~~l~~rl~kL~ 307 (849)
T COG3899 236 KLL------PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-ILATT-DAVVEFLAARLQKLP 307 (849)
T ss_pred ccc------cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-Cchhh-HHHHHHHHHHHhcCC
Confidence 221 24457889999999999998887776542 33344443222111 11111 125556888899999
Q ss_pred hHHHHHHhHhccCCCCcccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHhhccchh
Q 002800 335 SALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDDTELIGEEFFESLASHSLLH 394 (879)
Q Consensus 335 ~~~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~ 394 (879)
...++..-..|++-..+. ..-|-..|-. .....+...++.|....++-
T Consensus 308 ~~t~~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 308 GTTREVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILP 355 (849)
T ss_pred HHHHHHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceec
Confidence 999999999999976654 4444444411 23444555555555555544
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=3.1e-10 Score=122.79 Aligned_cols=243 Identities=21% Similarity=0.136 Sum_probs=112.5
Q ss_pred ccCCCCccEEEeccCCCcc-cccchhhhhccCCcccEEEcCCCCCc-ccccccccCcccccCCCCCEEecccCCCCcccC
Q 002800 462 VYNRKRLRSLVVERGEGFM-TGINLSALFDNLTCLRSLDLSNQDNG-FYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELP 539 (879)
Q Consensus 462 ~~~~~~LrsL~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~-~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP 539 (879)
+..+.+|+.|.+.++.-.. ....++..+...+.|+.|+++++.-. .+..+..++..+..+.+|++|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3445557777776652100 01123444556666777777661100 001112233455566677777777766322344
Q ss_pred cccccCCC---CcEEeccCccccc-----ccchhhhcc-cccceEecCCcccc-----cCCccCCCCCCCCcCCceeecc
Q 002800 540 ESLCDLYN---LETMELSWCISLK-----RLPQRMGQL-INLWHLVNDGTSLS-----YMPKGIERLTCLRTLNEFIVSV 605 (879)
Q Consensus 540 ~~i~~L~~---L~~L~L~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~~~~~~~ 605 (879)
..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++..+..
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 44444443 7777777663 32 223344455 66777777766654 1222233444455444322211
Q ss_pred cCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCc
Q 002800 606 GSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNL 685 (879)
Q Consensus 606 ~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L 685 (879)
. .. ........+..+++|+.|+++.|..... ........+...++|
T Consensus 178 ~-----~~------------------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~-----~~~~l~~~~~~~~~L 223 (319)
T cd00116 178 G-----DA------------------------GIRALAEGLKANCNLEVLDLNNNGLTDE-----GASALAETLASLKSL 223 (319)
T ss_pred c-----hH------------------------HHHHHHHHHHhCCCCCEEeccCCccChH-----HHHHHHHHhcccCCC
Confidence 0 00 0011122233345677777766654210 111222334445667
Q ss_pred cEEEEeeecCCccCcchhh-c----ccCCcEEeEcCCCCCC----CCC-CCCCCCccceeeccc
Q 002800 686 ERLEIFYHRGNTLSSIFIM-S----LAKLRSMSLDRCINLE----QLP-RLGELPSLESLTVRN 739 (879)
Q Consensus 686 ~~L~l~~~~~~~~~p~~~~-~----l~~L~~L~L~~~~~~~----~lp-~l~~l~~L~~L~L~~ 739 (879)
+.|++++|.........+. . .+.|++|++++|.... .+. .+..+++|++|++++
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 7777776654431111111 1 2567777776664321 111 133446666666665
No 36
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.87 E-value=4.9e-08 Score=108.32 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=106.2
Q ss_pred CceeeehhhHHH---HHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHH
Q 002800 82 SQVIVRDGEKNR---LLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIAR 156 (879)
Q Consensus 82 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~ 156 (879)
.++||++..+.. +.+++... ....+.|+|++|+||||+|+.+++. ....| +.++ ..-..-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 368888877655 77777543 3456778999999999999999983 33332 3332 11111112
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEE--Eccchh--hhh
Q 002800 157 AILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILV--TTCEEN--VIN 231 (879)
Q Consensus 157 ~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TtR~~~--v~~ 231 (879)
+++ +..... ..+++.+|++|+++.....+.+.+...+.. |..++| ||.+.. +..
T Consensus 79 ~ii------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVI------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHH------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 222 222111 145788999999998766667777666653 444444 344432 111
Q ss_pred -hcCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 232 -KMGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 232 -~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
.......+.+.+++.++.++++.+.+...... . ..--.+....|++.++|-|..+.-+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~-~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERG-L-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcC-C-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11234689999999999999998865431110 0 01113446788999999987665443
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.87 E-value=3e-08 Score=100.47 Aligned_cols=156 Identities=14% Similarity=0.182 Sum_probs=95.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
.+.+.|+|++|+|||+||+.+++. .......+.|+.... ..... ..+.+.+. +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~-~~~~~----------------------~~~~~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSK-SQYFS----------------------PAVLENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHH-hhhhh----------------------HHHHhhcc-cC
Confidence 456889999999999999999983 333333456665420 00000 01111122 23
Q ss_pred eEEEeecccccc-hHhHHH-HHHhccCC-CCCcEEEE-Eccc---------hhhhhhcCccceEeCCCCCHHhHHHHHHH
Q 002800 189 FLLVLDDVRSRY-FNYWQQ-LMYSLKSG-SEGSRILV-TTCE---------ENVINKMGNTRMISLGTLSEEASWSLFCL 255 (879)
Q Consensus 189 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iii-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 255 (879)
-+||+||+|... ...|+. +...+... ..|..+|| |+.. +.+..++.....++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998742 245653 33333322 23556654 4444 35556666677899999999999999999
Q ss_pred HhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 256 VAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 256 ~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
.++..+.. .+ +++..-|++.+.|-.-++..+-..|
T Consensus 173 ~a~~~~l~--l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 173 NAYQRGIE--LS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHcCCC--CC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98755432 22 3446778888887766555444333
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.4e-08 Score=104.75 Aligned_cols=173 Identities=21% Similarity=0.253 Sum_probs=102.9
Q ss_pred ccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHH
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARA 157 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 157 (879)
++...+++|-+..+.++ +..+ .+.-..+||++|+||||||+.++. .....|. .++
T Consensus 26 ~vGQ~HLlg~~~~lrr~---v~~~------~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~s--------- 80 (436)
T COG2256 26 VVGQEHLLGEGKPLRRA---VEAG------HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALS--------- 80 (436)
T ss_pred hcChHhhhCCCchHHHH---HhcC------CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----Eec---------
Confidence 33444555555554444 3333 455567999999999999999998 4444553 222
Q ss_pred HHHHhccCCCCCchhHHHHHHHH-HHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEE--Eccchhhh---h
Q 002800 158 ILESLKDGVSSDLVEIDTVLQQI-SHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILV--TTCEENVI---N 231 (879)
Q Consensus 158 i~~~l~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TtR~~~v~---~ 231 (879)
.......++....+.- +....+++.+|++|.|..-+..+-+.+.... ..|.-|+| ||-++... .
T Consensus 81 -------Av~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 81 -------AVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred -------cccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHH
Confidence 1111222333333333 2223589999999999987666666665444 45767776 66665421 1
Q ss_pred hcCccceEeCCCCCHHhHHHHHHHHhccCCCCch-hhH-HHHHHHHHHHhhcCCCh
Q 002800 232 KMGNTRMISLGTLSEEASWSLFCLVAFYWRRSDE-EFQ-ELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 232 ~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~-~~~-~l~~~~~~i~~~~~glP 285 (879)
......++++++|+.+|-.+++.+.+........ ... --++....+++.++|=-
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 2234679999999999999999984432221101 001 11334566788887754
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=1.1e-09 Score=118.49 Aligned_cols=256 Identities=20% Similarity=0.132 Sum_probs=155.7
Q ss_pred CCeeEEEEEecccCC-----CcccccCCCCccEEEeccCCCc---ccccchhhhhccCCcccEEEcCCCCCccccccccc
Q 002800 443 ENIQHLMIKFETERK-----FPTSVYNRKRLRSLVVERGEGF---MTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRV 514 (879)
Q Consensus 443 ~~~r~L~l~~~~~~~-----~~~~~~~~~~LrsL~l~~~~~~---~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l 514 (879)
..++.+.+..+.+.. ++..+...++++.|.+.++... .....++..+..+++|+.|++++ |......
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-----~~~~~~~ 97 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSD-----NALGPDG 97 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccC-----CCCChhH
Confidence 347777777776532 3444566777888888776321 01123455677899999999998 3322234
Q ss_pred CcccccCCC---CCEEecccCCCCc-----ccCcccccC-CCCcEEeccCccccc-----ccchhhhcccccceEecCCc
Q 002800 515 PRGIRKLLH---LRYLNLSRNSKIA-----ELPESLCDL-YNLETMELSWCISLK-----RLPQRMGQLINLWHLVNDGT 580 (879)
Q Consensus 515 p~~i~~L~~---Lr~L~L~~~~~i~-----~lP~~i~~L-~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~ 580 (879)
+..+..+.+ |++|++++|. +. .++..+..+ ++|+.|++++|. +. .++..+..+.+|++|++++|
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 445555555 9999999998 54 334456677 899999999994 44 35556777889999999999
Q ss_pred ccc-----cCCccCCCCCCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceE
Q 002800 581 SLS-----YMPKGIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLAL 655 (879)
Q Consensus 581 ~l~-----~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L 655 (879)
.+. .++..+..+++|+.|++..+..... . .......+..+++|+.|
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-----~------------------------~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE-----G------------------------ASALAETLASLKSLEVL 226 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChH-----H------------------------HHHHHHHhcccCCCCEE
Confidence 876 2333444556777776544332100 0 11122345566788888
Q ss_pred EEEeccCCCCCCCCCchHhhhcCC-CCCCCccEEEEeeecCCccC----cchhhcccCCcEEeEcCCCCCCC----CC-C
Q 002800 656 YLSLEKDREKGSTNKDDEDALEGL-QVPPNLERLEIFYHRGNTLS----SIFIMSLAKLRSMSLDRCINLEQ----LP-R 725 (879)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~----p~~~~~l~~L~~L~L~~~~~~~~----lp-~ 725 (879)
+++.|..... ........+ ...+.|++|++.+|...... ...+..+++|+.+++++|..... +. .
T Consensus 227 ~ls~n~l~~~-----~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 227 NLGDNNLTDA-----GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred ecCCCcCchH-----HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 8888764210 011111111 13468899999888664210 12233567899999988854322 22 1
Q ss_pred CCCC-Cccceeeccc
Q 002800 726 LGEL-PSLESLTVRN 739 (879)
Q Consensus 726 l~~l-~~L~~L~L~~ 739 (879)
+... +.|+.|++.+
T Consensus 302 ~~~~~~~~~~~~~~~ 316 (319)
T cd00116 302 LLEPGNELESLWVKD 316 (319)
T ss_pred HhhcCCchhhcccCC
Confidence 3333 6777777764
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.80 E-value=8.1e-08 Score=92.91 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=103.1
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.+|||.+.-+..+.-++..... .+....-+.+||++|+||||||+-+++ .....|. +.+.+ .
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~----------- 85 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-A----------- 85 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C-----------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-h-----------
Confidence 5899999888877655543211 123566788999999999999999998 4444542 22211 0
Q ss_pred hccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCC--------CCC-----------cEEEE
Q 002800 162 LKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSG--------SEG-----------SRILV 222 (879)
Q Consensus 162 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~iii 222 (879)
.....++...+.. + +++-+|.+|.++.-+..+-+.+..++.++ +++ +-|=.
T Consensus 86 --------i~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 86 --------IEKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred --------hhhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 0111112222222 2 24558888999987777777777776543 222 23446
Q ss_pred EccchhhhhhcCc--cceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 223 TTCEENVINKMGN--TRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 223 TtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
|||...+...+.. .-+.+++..+.+|-.++..+.+..-+.. .. ++.+.+|++.+.|-|--..-+-..+
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~--i~---~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE--ID---EDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E--E----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC--cC---HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 8887665544432 2345899999999999998877654432 22 4568999999999997554443333
No 41
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=4.5e-08 Score=109.73 Aligned_cols=197 Identities=17% Similarity=0.113 Sum_probs=121.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.|.+ ..+......-+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 468999999999998887653 23456899999999999999998843222223334454433 111100000001
Q ss_pred HhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhhc-Cccc
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINKM-GNTR 237 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~-~~~~ 237 (879)
.+.........+..++.+.+... ..+++-++|+|+++....+.++.+...+........+|++|.. ..+...+ ....
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 11101111122233333322221 2345668999999987777888898888776666666666544 3333222 2356
Q ss_pred eEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 238 MISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 238 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
.+++.+++.++..+.+.+.+...+.. .. .+....|++.++|.+--+
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~--i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGRE--AE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 89999999999999999877654432 11 345778999999988544
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=4.8e-10 Score=119.39 Aligned_cols=144 Identities=25% Similarity=0.311 Sum_probs=89.9
Q ss_pred eEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCC
Q 002800 446 QHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLR 525 (879)
Q Consensus 446 r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr 525 (879)
...+++.|....+|..++.+..|.++.+..|. ...+|..+.++..|.+|||+. |.+..+|..++.|+ |+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~----~r~ip~~i~~L~~lt~l~ls~------NqlS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNC----IRTIPEAICNLEALTFLDLSS------NQLSHLPDGLCDLP-LK 146 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhcc----ceecchhhhhhhHHHHhhhcc------chhhcCChhhhcCc-ce
Confidence 44455555555566666666666666665542 223455566677777777776 66666666666664 66
Q ss_pred EEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceee
Q 002800 526 YLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIV 603 (879)
Q Consensus 526 ~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 603 (879)
.|-+++|+ ++.+|..|+.+..|..||.+.| .+..+|..+++|.+|+.|.+..|++..+|+.+..|+ |..|+..++
T Consensus 147 vli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 147 VLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN 221 (722)
T ss_pred eEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC
Confidence 67776666 6777766766666777777666 566666667777777766666666666666655332 445544433
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.71 E-value=8.8e-08 Score=88.28 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=78.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc-----cceEEEEEee--cchHHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-----FSKRIWVSAS--YPEIRIARAILESLKDGVSSDLVEIDTVLQQI 180 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 180 (879)
+.+.+.|+|.+|+|||++++.++++ .... -..++|+.+. .+...+...++.++. .......+.+.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALG-LPLKSRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT--SSSSTS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhC-ccccccCCHHHHHHHH
Confidence 4567899999999999999999983 2221 2346688887 668899999999998 3333345666677888
Q ss_pred HHHhhCCe-eEEEeeccccc-chHhHHHHHHhccCCCCCcEEEEEccc
Q 002800 181 SHYIQGNR-FLLVLDDVRSR-YFNYWQQLMYSLKSGSEGSRILVTTCE 226 (879)
Q Consensus 181 ~~~l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTtR~ 226 (879)
.+.+...+ .+||+|+++.. ..+.++.+..... ..+.+||++.+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 88777554 59999999886 5555666655444 566777777654
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=2.1e-07 Score=94.92 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=100.2
Q ss_pred ehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccC
Q 002800 87 RDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDG 165 (879)
Q Consensus 87 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~ 165 (879)
.+..++.+.+++... ....+.|+|++|+|||+||+.+++. ........+++.++ .. .-...
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~--~~~~~-------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA--QADPE-------- 83 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH--HhHHH--------
Confidence 345667777765432 4567889999999999999999983 32233344555543 11 00001
Q ss_pred CCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchH-hH-HHHHHhccC-CCCCcEEEEEccchh---------hhhhc
Q 002800 166 VSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFN-YW-QQLMYSLKS-GSEGSRILVTTCEEN---------VINKM 233 (879)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iiiTtR~~~---------v~~~~ 233 (879)
+...+.+ .-+||+||++..... .| +.+...+.. ...+.+||+||+... +...+
T Consensus 84 --------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1111222 238999999875322 23 334444332 123447888887532 12222
Q ss_pred CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhh
Q 002800 234 GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSH 294 (879)
Q Consensus 234 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~ 294 (879)
.....+++.+++.++...++...+..... ... .+....|++.+.|.|..+.-+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL--QLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 22467999999999999999876543222 112 334667777888888777655433
No 45
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=6.2e-07 Score=101.63 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=117.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.......+.. .. +..-...+.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~P--CG~C~sCr~I~~G 85 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QP--CGVCRACREIDEG 85 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CC--CcccHHHHHHhcC
Confidence 479999999999999997653 2445679999999999999988873221111100 00 0000111111100
Q ss_pred -------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh-hhhh
Q 002800 162 -------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN-VINK 232 (879)
Q Consensus 162 -------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~ 232 (879)
+.........+..++++.+... ..++.-++|||+++......|..++..+.......++|+||.+.. +...
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 0000011112222222222111 123445888999999877889999888887777888888887743 3222
Q ss_pred -cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh-hHHHHH
Q 002800 233 -MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP-LAVKVI 291 (879)
Q Consensus 233 -~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP-Lai~~~ 291 (879)
......+.+++++.++..+.+.+.+...+.. .. .+....|++.++|.. -|+..+
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id---~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FE---PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1235789999999999999998876544321 11 344678899998855 455553
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=8.4e-10 Score=117.58 Aligned_cols=190 Identities=26% Similarity=0.299 Sum_probs=138.4
Q ss_pred cEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccccCCCC
Q 002800 469 RSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLYNL 548 (879)
Q Consensus 469 rsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L~~L 548 (879)
...+++.|. ...+|..+..|..|..|.|.. +.+..+|..+++|..|.||+|+.|+ +..+|..++.|+ |
T Consensus 78 ~~aDlsrNR----~~elp~~~~~f~~Le~liLy~------n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 78 VFADLSRNR----FSELPEEACAFVSLESLILYH------NCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred hhhhccccc----cccCchHHHHHHHHHHHHHHh------ccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 344555542 333566678888899999998 7788899999999999999999999 999999999887 9
Q ss_pred cEEeccCcccccccchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceeecccCCCCcccCcccccccccCCCee
Q 002800 549 ETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSL 628 (879)
Q Consensus 549 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L 628 (879)
+.|-+++| +++.+|..++.+.+|.+|+.+.|.+..+|..++.+.+|+.|+...+.. .
T Consensus 146 kvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l----------------~------ 202 (722)
T KOG0532|consen 146 KVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL----------------E------ 202 (722)
T ss_pred eeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh----------------h------
Confidence 99999988 899999999999999999999999999999999999998886443322 0
Q ss_pred EEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcchhh---c
Q 002800 629 KIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIM---S 705 (879)
Q Consensus 629 ~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~---~ 705 (879)
.+++.+.. -.|..|++++|+.... .-.+..+.+|++|-|.+|....- |..+. .
T Consensus 203 ------------~lp~El~~-LpLi~lDfScNkis~i----------Pv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGk 258 (722)
T KOG0532|consen 203 ------------DLPEELCS-LPLIRLDFSCNKISYL----------PVDFRKMRHLQVLQLENNPLQSP-PAQICEKGK 258 (722)
T ss_pred ------------hCCHHHhC-CceeeeecccCceeec----------chhhhhhhhheeeeeccCCCCCC-hHHHHhccc
Confidence 01223331 2466777777765321 12334556777777777765543 44443 3
Q ss_pred ccCCcEEeEcCC
Q 002800 706 LAKLRSMSLDRC 717 (879)
Q Consensus 706 l~~L~~L~L~~~ 717 (879)
..-.++|+...|
T Consensus 259 VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 259 VHIFKYLSTQAC 270 (722)
T ss_pred eeeeeeecchhc
Confidence 334456666666
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=6.4e-07 Score=97.53 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=114.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++.......+... ....-...+++...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~-----pc~~c~~c~~~~~~ 85 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN-----PCRKCIICKEIEKG 85 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC-----CCCCCHHHHHHhcC
Confidence 479999999999999887653 23456899999999999999998732111100000 00000001111100
Q ss_pred ----h---ccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhh
Q 002800 162 ----L---KDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINK 232 (879)
Q Consensus 162 ----l---~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~ 232 (879)
+ .........+..++.+.+... ..+++-++|+|+++....+.++.+...+.......++|++|.+. .+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0 000001112222222222111 12345689999999877677888888888776777777777553 33322
Q ss_pred c-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 233 M-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 233 ~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
. .....+++.+++.++..+.+...+...+.. .. ++.+..|++.++|-|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESID--TD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 2 234689999999999999888766543321 11 334677899999987543
No 48
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.67 E-value=5.4e-08 Score=95.84 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=41.9
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cc-------hHH
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YP-------EIR 153 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~-------~~~ 153 (879)
.||||+++++++...|... .....+.+.|+|++|+|||+|+++++. ++..+.. . |+... .. ...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 73 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLD--RLAERGG-Y-VISINCDDSERNPYSPFRS 73 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHH--HHHHHT----EEEEEEETTTS-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCC-E-EEEEEEeccccchhhHHHH
Confidence 4899999999999999622 223568899999999999999999998 4444421 2 44443 22 255
Q ss_pred HHHHHHHHhc
Q 002800 154 IARAILESLK 163 (879)
Q Consensus 154 ~~~~i~~~l~ 163 (879)
++++++.++.
T Consensus 74 ~~~~l~~~~~ 83 (185)
T PF13191_consen 74 ALRQLIDQLL 83 (185)
T ss_dssp HHHHHS----
T ss_pred HHHHHHHHhh
Confidence 5566655543
No 49
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=5.3e-08 Score=101.49 Aligned_cols=270 Identities=20% Similarity=0.189 Sum_probs=172.1
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccce-EEEEEee--cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHh
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSK-RIWVSAS--YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYI 184 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 184 (879)
..|.+.++|.|||||||++-.+.. +...|.. +.++... .+...+...+...++. ...+.+.....+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl----~~~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGL----HVQPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccc----ccccchHHHHHHHHHH
Confidence 567899999999999999999986 5566755 4455544 3444444444444441 1222334455666777
Q ss_pred hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhhhcCccceEeCCCCCHH-hHHHHHHHHhccCCCC
Q 002800 185 QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINKMGNTRMISLGTLSEE-ASWSLFCLVAFYWRRS 263 (879)
Q Consensus 185 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~a~~~~~~ 263 (879)
.++|.++|+||..+. .+.-..+...+..+.+.-.|+.|+|..-. ........+.+|+.. ++.++|...+.....+
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 889999999998764 33444555666666777789999997433 234556777888775 7999998877554433
Q ss_pred chhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCHHHHHHHHhhhhcccccc-------CccchhhHHhhhcCChhH
Q 002800 264 DEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGEWLNVLKSKIWELKLA-------DKEHFLPLLLSYYDLPSA 336 (879)
Q Consensus 264 ~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~~sy~~L~~~ 336 (879)
......-.....+|.++.+|.|++|..+++..+.- ...+-...+......+.+. +....+.+.+||.-|..-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 22223335668899999999999999999988644 2333333333222222211 245788999999999999
Q ss_pred HHHHHhHhccCCCCcccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHhhccchhhhh
Q 002800 337 LRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDDTELIGEEFFESLASHSLLHDFQ 397 (879)
Q Consensus 337 ~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~ 397 (879)
.+--|--++.|.-.+... ...|.+-|=.... ..-....-+..+++.++.....
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~ 293 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALD 293 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhhh
Confidence 888899999887776544 3344444322100 1111222355666777765444
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1.1e-06 Score=93.88 Aligned_cols=180 Identities=15% Similarity=0.177 Sum_probs=118.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccc----ccccccceEEEEEeecchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDID----AVKTHFSKRIWVSASYPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~s~~~~~~~~~ 157 (879)
.+++|.+..++.+.+++..+. -.....++|+.|+||||+|+.++... ....|+|...|....
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--------- 69 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--------- 69 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc---------
Confidence 468999999999999997653 34567899999999999999998731 123455554444311
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHH-HhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhh-hh-cC
Q 002800 158 ILESLKDGVSSDLVEIDTVLQQISH-YIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVI-NK-MG 234 (879)
Q Consensus 158 i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~-~~-~~ 234 (879)
+.........++.+.+.. -..+++=++|+|+++..+.+.+..+...+.....++.+|++|.+.+.. .. ..
T Consensus 70 -------~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 70 -------KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred -------CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 111111122222221111 112455577788887777788999999999888899999988765422 11 12
Q ss_pred ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 235 NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 235 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
....+++.+++.++....+.+...+ .+ .+.+..++..++|.|.-+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~--~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND--IK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC--CC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 3578999999999998877654321 11 222667899999998765543
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=8.3e-07 Score=102.73 Aligned_cols=199 Identities=13% Similarity=0.075 Sum_probs=118.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccce-EEEEEee-cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSK-RIWVSAS-YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s-~~~~~~~~~i~ 159 (879)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.......... -+-.|-+ ..+.......+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 479999999999999987653 2344579999999999999999983211111000 0000100 00000000000
Q ss_pred HHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhh-cCcc
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINK-MGNT 236 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~-~~~~ 236 (879)
..+.........+..++.+.+... ..+++-++|||+++....+.++.++..+.......++|++|.+ ..+... ....
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 000100011222333333333221 2356779999999998888899999888877677777776655 333322 2235
Q ss_pred ceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHH
Q 002800 237 RMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKV 290 (879)
Q Consensus 237 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~ 290 (879)
..+++++++.++..+.+.+.+-..+.. .. .+....|++.++|.|--+..
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~--~e---deAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLP--FE---AEALTLLAKAANGSMRDALS 219 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 789999999999999998766443221 11 34477899999998854433
No 52
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=8.8e-07 Score=99.41 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=117.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
.++||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++..-... ++... +..-...+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTSTPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCCCCccCHHHHHHhc
Confidence 479999999999999998653 345678999999999999999987311110 11111 111111111110
Q ss_pred H-------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh-hhh
Q 002800 161 S-------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN-VIN 231 (879)
Q Consensus 161 ~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~ 231 (879)
. +.........+..+++..+... ..++.-++|+|+|+..+...+..+...+.....+.++|++|.+.. +..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0 0000011112222222222111 235566899999998777788888888887667778888776632 221
Q ss_pred h-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHH
Q 002800 232 K-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVK 289 (879)
Q Consensus 232 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~ 289 (879)
. ......+++++++.++..+.+.+.+...+.. .. .+....|++.++|-+-.+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--AD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHH
Confidence 1 2345789999999999999998876554332 11 3346778999999774443
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=1.7e-08 Score=112.47 Aligned_cols=183 Identities=36% Similarity=0.425 Sum_probs=132.3
Q ss_pred hccCCcccEEEcCCCCCcccccccccCcccccCC-CCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhh
Q 002800 489 FDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLL-HLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMG 567 (879)
Q Consensus 489 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~-~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 567 (879)
+..++.+..|++.+ +.+.++|...+.+. +|++|++++|. +..+|..++.+++|+.|++++| .+..+|...+
T Consensus 112 ~~~~~~l~~L~l~~------n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDN------NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCC------cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhh
Confidence 55668899999998 88999998888885 99999999999 9999888999999999999998 7899999888
Q ss_pred cccccceEecCCcccccCCccCCCCCCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccC
Q 002800 568 QLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELG 647 (879)
Q Consensus 568 ~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~ 647 (879)
.+.+|+.|++++|.+..+|..++.+..|++|....+.. +.. ...+.
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~---------~~~-------------------------~~~~~ 229 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI---------IEL-------------------------LSSLS 229 (394)
T ss_pred hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc---------eec-------------------------chhhh
Confidence 99999999999999999998777777788886554421 000 11122
Q ss_pred CccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCC
Q 002800 648 KKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR 725 (879)
Q Consensus 648 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 725 (879)
.+.++..+.+..+... .....+..+++++.|+++++.+..+ +. ++.+.+|+.|+++++.....+|.
T Consensus 230 ~~~~l~~l~l~~n~~~----------~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 230 NLKNLSGLELSNNKLE----------DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hcccccccccCCceee----------eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 3333444443333221 1123344556677777777777766 33 66777888888887765555443
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=3.5e-06 Score=95.55 Aligned_cols=246 Identities=12% Similarity=0.053 Sum_probs=141.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
.+++|+++.++.+.+|+..-.. +...+.+.|+|++|+||||+|+.+++. .. |+ .+-+.++ .........++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTADVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHHHHHHHHH
Confidence 4799999999999999875321 123678899999999999999999983 22 22 2223333 222333333333
Q ss_pred HhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccch----HhHHHHHHhccCCCCCcEEEEEccchh-hhh-hc-
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYF----NYWQQLMYSLKSGSEGSRILVTTCEEN-VIN-KM- 233 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~-~~- 233 (879)
...... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 87 ~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 87 EAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 322000 00113677999999987422 345666665553 3345666664422 111 11
Q ss_pred CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccC---CCHHHHHHHHhh
Q 002800 234 GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFK---RNIGEWLNVLKS 310 (879)
Q Consensus 234 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~---~~~~~w~~~~~~ 310 (879)
.....+++.+++.++....+.+.+...+.. .. .++...|++.++|-.-.+......+... -+.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE--CD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 234679999999999999988877554432 12 3447788999998765554333333222 12333332221
Q ss_pred hhccccccCccchhhHHhhhc-CChhHHHHHHhHhccCCCCcccCHHHHHHHHHHcCCccc
Q 002800 311 KIWELKLADKEHFLPLLLSYY-DLPSALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKV 370 (879)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~W~a~g~i~~ 370 (879)
...+..++.++..-+. .-+......+..+. ++- ..+-.|+.|.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1223456777765554 33334433332221 222 35778999999764
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.62 E-value=7.5e-07 Score=97.05 Aligned_cols=194 Identities=13% Similarity=0.068 Sum_probs=110.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc-cce-EEEEEeecchH-HHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-FSK-RIWVSASYPEI-RIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~-~~wv~~s~~~~-~~~~~i 158 (879)
.+++|+++.++.+.+++..+ ..+.+.++|++|+||||+|+.+++. +..+ +.. .+.+.++ +.. .....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~-~~~~~~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVA-DFFDQGKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechh-hhhhcchhhh
Confidence 46899999999999988754 3345789999999999999999873 2222 221 2333332 110 000000
Q ss_pred ------HHHhccCCCCCchhHHHHHHHHHHH---h--hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch
Q 002800 159 ------LESLKDGVSSDLVEIDTVLQQISHY---I--QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE 227 (879)
Q Consensus 159 ------~~~l~~~~~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 227 (879)
...............+.....++.. . .+.+-+||+||++.........+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0000000000001112222222221 1 1334589999998765455566666665555567888877543
Q ss_pred h-hhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHH
Q 002800 228 N-VINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVK 289 (879)
Q Consensus 228 ~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~ 289 (879)
. +...+ .....+++.+++.++..+++.+.+...+.. .. .+....+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHH
Confidence 2 22222 234578999999999999998876544321 12 3447788888888765543
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-08 Score=104.86 Aligned_cols=235 Identities=20% Similarity=0.185 Sum_probs=133.2
Q ss_pred cccCCCCCEEecccCCCCcccCc--ccccCCCCcEEeccCccccc---ccchhhhcccccceEecCCcccccCCccCCCC
Q 002800 518 IRKLLHLRYLNLSRNSKIAELPE--SLCDLYNLETMELSWCISLK---RLPQRMGQLINLWHLVNDGTSLSYMPKGIERL 592 (879)
Q Consensus 518 i~~L~~Lr~L~L~~~~~i~~lP~--~i~~L~~L~~L~L~~~~~l~---~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l 592 (879)
-.++.+|+...|.++. +...+. ....|++++.|||++| .+. .+-.-...|++|+.|+++.|.+...-.. .
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---~ 191 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---N 191 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccc---c
Confidence 3567777777777776 666553 4566777777777776 222 2223344666666666666643311100 0
Q ss_pred CCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCch
Q 002800 593 TCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDD 672 (879)
Q Consensus 593 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 672 (879)
.+ ..+++|+.|.|+.|.++ -
T Consensus 192 ---~~-------------------------------------------------~~l~~lK~L~l~~CGls--------~ 211 (505)
T KOG3207|consen 192 ---TT-------------------------------------------------LLLSHLKQLVLNSCGLS--------W 211 (505)
T ss_pred ---ch-------------------------------------------------hhhhhhheEEeccCCCC--------H
Confidence 00 01345566666666542 1
Q ss_pred HhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCC--CCCCCCCCCccceeeccccccceEecccc
Q 002800 673 EDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLE--QLPRLGELPSLESLTVRNMRRLEKVGNEF 750 (879)
Q Consensus 673 ~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~lp~l~~l~~L~~L~L~~~~~l~~~~~~~ 750 (879)
.++...+..+|+|+.|.+.+|.+-.........+..|+.|+|++|.... ..+..+.||.|..|.++.|. +..+.. +
T Consensus 212 k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~-~ 289 (505)
T KOG3207|consen 212 KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE-P 289 (505)
T ss_pred HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcC-C
Confidence 2233333445777778877774222212233467788899998886544 34568888999988888743 222210 0
Q ss_pred cCCchhhhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCccCeeecc
Q 002800 751 LGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIG 830 (879)
Q Consensus 751 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~ 830 (879)
+.........||+|+.|++..+ ++.+|.. ......+++|+.|.+.
T Consensus 290 ----------------------------d~~s~~kt~~f~kL~~L~i~~N-~I~~w~s------l~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 290 ----------------------------DVESLDKTHTFPKLEYLNISEN-NIRDWRS------LNHLRTLENLKHLRIT 334 (505)
T ss_pred ----------------------------CccchhhhcccccceeeecccC-ccccccc------cchhhccchhhhhhcc
Confidence 0011112457999999999998 6777765 2345677888888875
Q ss_pred CCCCCcCCCC-------CCCCCccEEEEeecC
Q 002800 831 FCPKLETLPD-------DYLPQLLDLKIFSCP 855 (879)
Q Consensus 831 ~C~~L~~lp~-------~~l~~L~~L~i~~c~ 855 (879)
. +.+..=.. ..+++|..|+=.+|.
T Consensus 335 ~-n~ln~e~~~a~~~VIAr~~~l~~LN~~di~ 365 (505)
T KOG3207|consen 335 L-NYLNKETDTAKLLVIARISQLVKLNDVDIS 365 (505)
T ss_pred c-ccccccccceeEEeeeehhhhhhhcccccC
Confidence 3 44431111 124556655555554
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=3.5e-08 Score=93.69 Aligned_cols=128 Identities=30% Similarity=0.388 Sum_probs=51.9
Q ss_pred CCCCccEEEeccCCCcccccchhhhhc-cCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCccc
Q 002800 464 NRKRLRSLVVERGEGFMTGINLSALFD-NLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESL 542 (879)
Q Consensus 464 ~~~~LrsL~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i 542 (879)
+..++|.|.+.++. +.. +.. ++ .+..|++|+|++ +.+..++ .+..+++|+.|++++|. +..++..+
T Consensus 17 n~~~~~~L~L~~n~---I~~-Ie~-L~~~l~~L~~L~Ls~------N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ---IST-IEN-LGATLDKLEVLDLSN------NQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp -----------------------S---TT-TT--EEE-TT------S--S--T-T----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccc---ccc-ccc-hhhhhcCCCEEECCC------CCCcccc-CccChhhhhhcccCCCC-CCccccch
Confidence 34466777777763 211 122 33 567888888888 7777775 47778889999998888 88887655
Q ss_pred -ccCCCCcEEeccCcccccccc--hhhhcccccceEecCCcccccCCc----cCCCCCCCCcCCceeecc
Q 002800 543 -CDLYNLETMELSWCISLKRLP--QRMGQLINLWHLVNDGTSLSYMPK----GIERLTCLRTLNEFIVSV 605 (879)
Q Consensus 543 -~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~~~ 605 (879)
..+++|++|++++| .+..+- ..+..+++|++|++.+|++...+. -+..+++|+.|+...+..
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 36888999999887 454443 346678889999999888775543 256788888887766544
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=2.7e-09 Score=109.85 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=56.7
Q ss_pred CCCccceeeeccCccccccccccccCCCCCCCCCCccCeeeccCCCCCcCC--CC-CCCCCccEEEEeecCchHHhh-hh
Q 002800 788 AFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLETL--PD-DYLPQLLDLKIFSCPKLEERY-KE 863 (879)
Q Consensus 788 ~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~L~~l--p~-~~l~~L~~L~i~~c~~l~~~~-~~ 863 (879)
++|.|++|.++.|..+++-.. ..- ......+..|+.|++.+||.++.- .. ...++|+.+++.+|......- +.
T Consensus 370 ~C~~lr~lslshce~itD~gi--~~l-~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGI--RHL-SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred CCchhccCChhhhhhhhhhhh--hhh-hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 789999999999976655411 000 012246888999999999988732 22 225899999999999776653 22
Q ss_pred ccCccccceeeeccc
Q 002800 864 GTAERGNISHVHLYF 878 (879)
Q Consensus 864 ~~~~~~~i~hi~~~~ 878 (879)
.....++|. |++||
T Consensus 447 ~~~~lp~i~-v~a~~ 460 (483)
T KOG4341|consen 447 FATHLPNIK-VHAYF 460 (483)
T ss_pred HHhhCccce-ehhhc
Confidence 223344444 55555
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=98.57 E-value=1.1e-06 Score=94.28 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=107.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccce-EEEEEee-cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSK-RIWVSAS-YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s-~~~~~~~~~i~ 159 (879)
.+++|.++.++.|.+++..+ ..+-+.++|++|+||||+|+.+++.. ....|.. ++-+..+ ..-.+..++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGIDVVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHHHHHHHH
Confidence 46899999888888877654 33457799999999999999998731 1222221 1111111 11112222222
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhhc-Cccc
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINKM-GNTR 237 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~-~~~~ 237 (879)
..+. ..... .-.++.-++++|+++.........+...+......+++|+++... .+.... ....
T Consensus 86 ~~~~-~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 86 KMFA-QKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHH-hcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221 00000 001346689999999876666666766666555667777776542 222111 1245
Q ss_pred eEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhH
Q 002800 238 MISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLA 287 (879)
Q Consensus 238 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLa 287 (879)
.++++++++++..+.+...+...+.. .. .+....|++.++|-.-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~--i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP--YV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHH
Confidence 79999999999999998877554432 12 23467888888886533
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=6.3e-07 Score=84.47 Aligned_cols=124 Identities=18% Similarity=0.147 Sum_probs=71.3
Q ss_pred eeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhc
Q 002800 85 IVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLK 163 (879)
Q Consensus 85 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~ 163 (879)
+|+++.+..+...+... ..+.+.|+|++|+||||+|+.+++. ....-..++++... ..............
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999998888753 3457889999999999999999983 32222335555544 11111100000000
Q ss_pred cCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCC------CCCcEEEEEccchh
Q 002800 164 DGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSG------SEGSRILVTTCEEN 228 (879)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iiiTtR~~~ 228 (879)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223456789999999864222333333333322 36778888887643
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.9e-06 Score=96.84 Aligned_cols=184 Identities=18% Similarity=0.183 Sum_probs=116.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-------------------ccceE
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-------------------HFSKR 142 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 142 (879)
.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 479999999999999997643 344567999999999999999987211100 11112
Q ss_pred EEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEE
Q 002800 143 IWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRIL 221 (879)
Q Consensus 143 ~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 221 (879)
+++... ...+..+...+.+.+... ..+++-++|+|+++....+.++.+...+......+.+|
T Consensus 91 ieidaa-----------------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 91 IEIDAA-----------------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EEeecc-----------------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 222110 111122333333333321 23566699999999877778888998888776677666
Q ss_pred EEccc-hhhhhh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh-hHHHHHh
Q 002800 222 VTTCE-ENVINK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP-LAVKVIG 292 (879)
Q Consensus 222 iTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP-Lai~~~~ 292 (879)
++|.+ ..+... ......+++++++.++..+.+.+.+...+.. .. .+....|++.++|-+ -|+..+-
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e---~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN--SD---EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 55543 333322 2335789999999999888888765433221 11 334567899999965 4554443
No 62
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.1e-06 Score=92.31 Aligned_cols=206 Identities=14% Similarity=0.174 Sum_probs=130.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccce--EEEEEee--cchHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSK--RIWVSAS--YPEIRIAR 156 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~s--~~~~~~~~ 156 (879)
|..+.+|+++++++...|...-. +....-+.|+|.+|+|||+.++.+++ ++...... +++|.+- .+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34599999999999998875432 11222388999999999999999998 44444222 5677666 88899999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHhh--CCeeEEEeecccccchHhHHHHHHhccCCCC-CcEEEE--Eccchhhhh
Q 002800 157 AILESLKDGVSSDLVEIDTVLQQISHYIQ--GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSE-GSRILV--TTCEENVIN 231 (879)
Q Consensus 157 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~iii--TtR~~~v~~ 231 (879)
.|+.+++ ..+.......+..+.+.+.+. ++.+++|||+++......-+.+...+..... .++|++ .+-+.....
T Consensus 92 ~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 92 KILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 9999997 555555556666667777665 5789999999976321111344444443322 455433 333332222
Q ss_pred hcC-------ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCC-ChhHHHHH
Q 002800 232 KMG-------NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKN-LPLAVKVI 291 (879)
Q Consensus 232 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~g-lPLai~~~ 291 (879)
.+. ....+...|-+.+|-.+.+..++-..-.+....+...+++..++..-+| --.||.++
T Consensus 171 ~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 171 YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 221 1234789999999999999988753322222233444445555555554 44555444
No 63
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.7e-06 Score=96.85 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=117.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc---ccceEEEEEee-cchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT---HFSKRIWVSAS-YPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~s-~~~~~~~~~ 157 (879)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...... ... +... +..-...+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~~~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----ITAQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----CCCCCCcccHHHHH
Confidence 479999999999999998663 344567999999999999999987321100 000 0000 000011111
Q ss_pred HHH-------HhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hh
Q 002800 158 ILE-------SLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-EN 228 (879)
Q Consensus 158 i~~-------~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~ 228 (879)
|.. .+.........+..++.+.+... ..++.-++|+|+++..+...+..++..+.....+.++|++|.+ ..
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 110 00100111222233333322211 1355568999999998888888898888776666676655554 44
Q ss_pred hhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 229 VINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 229 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
+...+ .....+.+++++.++..+.+.+.+...+.. .. .+....|++.++|.|.-...+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 43222 235789999999999999988776443321 11 234577899999998654433
No 64
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=2.8e-07 Score=84.19 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=77.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN 187 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 187 (879)
.+++.|.|+-|+||||++++++.+.. ....++++... ...... . +.+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~--------~--------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRL--------A--------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHH--------h--------hhh-hHHHHHHhhccC
Confidence 46889999999999999999997422 22345555543 111000 0 000 223333333447
Q ss_pred eeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhhh------cCccceEeCCCCCHHhH
Q 002800 188 RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK------MGNTRMISLGTLSEEAS 249 (879)
Q Consensus 188 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 249 (879)
+.++++|+|... .+|......+.+..+..+|++|+........ .+....+++.||+-.|-
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 788999999885 4788877777776677899999998655422 12345789999998773
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.2e-06 Score=95.63 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=116.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccc-eEEEEEeecchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFS-KRIWVSASYPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~i~~ 160 (879)
.++||.+..+..|..++..+. -...+.++|+.|+||||+|+.+++......... ..+..|. .-..+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--sC~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--SCLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--HHHHHHccCCc
Confidence 479999999999999988653 233578999999999999999987321110000 0011111 11111111100
Q ss_pred Hh---ccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhhc-C
Q 002800 161 SL---KDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINKM-G 234 (879)
Q Consensus 161 ~l---~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~-~ 234 (879)
.+ ......+..+..++.+.+... ..++.-++|+|+|+....+.++.+...+........+|++|.. ..+.... .
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 11 100111223333333333322 2355669999999998888899998888765556665555544 4443332 2
Q ss_pred ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 235 NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 235 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
....+.+.+++.++..+.+.+.+...+.. .. .+....|++.++|-+--+
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCChHHHH
Confidence 34679999999999999888876544321 11 344778999999988443
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.3e-07 Score=100.66 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=116.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc------cceEEEEEeecchHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH------FSKRIWVSASYPEIRIA 155 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~~ 155 (879)
.++||.+..+..|...+..+. -...+.++|+.|+||||+|+.+++....... +.. +-.|. ..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~-C~~C~------~C 88 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT-CEQCT------NC 88 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC-CCCCh------HH
Confidence 478999999999988887653 3456789999999999999999873211111 000 00110 00
Q ss_pred HHHHH-------HhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEE-Eccc
Q 002800 156 RAILE-------SLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILV-TTCE 226 (879)
Q Consensus 156 ~~i~~-------~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TtR~ 226 (879)
..+.. .+.........+...+.+..... ..+++-++|+|+++......|..+...+....+.+.+|+ ||+.
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 01100 01101112223333333332211 235667899999998777889999988887666777665 4444
Q ss_pred hhhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 227 ENVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 227 ~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
..+.... .....+++.+++.++..+.+.+.+...+.. .. .+....|++.++|-+--+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 4444332 234679999999999999999887654432 11 234567888999876443
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.2e-06 Score=98.31 Aligned_cols=196 Identities=12% Similarity=0.117 Sum_probs=116.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
.+++|++..++.+.+++..+. -...+.++|+.|+||||+|+.+++... |.-|.... ...-...+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGDCCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCCCCcccHHHHHHHc
Confidence 479999999999999987653 345677999999999999999987321 11121111 111111111111
Q ss_pred Hh-------ccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhh
Q 002800 161 SL-------KDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVIN 231 (879)
Q Consensus 161 ~l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~ 231 (879)
.. .........+.+.+.+.+... ..+++=++|+|+++....+.+..+...+......+.+|++|.. ..+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 10 000011122233333222211 1233446999999887667888888888776666666665544 33322
Q ss_pred h-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh-hHHHHHhh
Q 002800 232 K-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP-LAVKVIGS 293 (879)
Q Consensus 232 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP-Lai~~~~~ 293 (879)
. ......+++.+++.++....+...+...+.. .. .+.+..+++.++|-+ .|+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 2235689999999999998888876543321 11 234678899999965 44444433
No 68
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.54 E-value=8.6e-07 Score=103.36 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=99.0
Q ss_pred CceeeehhhHH---HHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHH
Q 002800 82 SQVIVRDGEKN---RLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~ 157 (879)
.+++|++..+. .+.+.+... ....+.++|++|+||||+|+.+++ ....+|. .+..+ ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~~~i------ 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVLAGV------ 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhhhhh------
Confidence 46899888774 455555543 455678999999999999999998 3444441 11111 111
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHHHh--hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEE--ccchh--hhh
Q 002800 158 ILESLKDGVSSDLVEIDTVLQQISHYI--QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVT--TCEEN--VIN 231 (879)
Q Consensus 158 i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiT--tR~~~--v~~ 231 (879)
.+.........+.+ .+++.+||+|||+.-+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 11111122222222 2467899999998866667777765554 35555553 44321 211
Q ss_pred hc-CccceEeCCCCCHHhHHHHHHHHhcc------CCCCchhhHHHHHHHHHHHhhcCCCh
Q 002800 232 KM-GNTRMISLGTLSEEASWSLFCLVAFY------WRRSDEEFQELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 232 ~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~------~~~~~~~~~~l~~~~~~i~~~~~glP 285 (879)
.. ....++.+++|+.++...++.+.+.. .... ... ++....|++.+.|.-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v-~I~---deaL~~La~~s~GD~ 211 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKV-DLE---PEAEKHLVDVANGDA 211 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCccc-CCC---HHHHHHHHHhCCCCH
Confidence 11 23467999999999999999876641 1111 111 334667788887754
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.51 E-value=2.2e-06 Score=86.98 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=96.1
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhh
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQ 185 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 185 (879)
...-+.+||++|+||||||+.+....+-.. ..||..| ..-..-.++|+++.. -...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq----------------~~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ----------------NEKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH----------------HHHhhh
Confidence 567788999999999999999998433222 4467766 222233444444433 012246
Q ss_pred CCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEE--Eccchhh---hhhcCccceEeCCCCCHHhHHHHHHHHhc--
Q 002800 186 GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILV--TTCEENV---INKMGNTRMISLGTLSEEASWSLFCLVAF-- 258 (879)
Q Consensus 186 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TtR~~~v---~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~-- 258 (879)
++|.+|++|.|..-+..+-+. ++|....|+-++| ||.++.. +..+....++.+++|+.++...++.+...
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999998754333333 3566667877776 6766543 22234467899999999999888887432
Q ss_pred -cCCC---Cchhh--HHHHHHHHHHHhhcCCCh
Q 002800 259 -YWRR---SDEEF--QELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 259 -~~~~---~~~~~--~~l~~~~~~i~~~~~glP 285 (879)
.... +.+.+ ..-..+..-++..|.|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111 10111 122345666777777754
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=6.5e-08 Score=107.80 Aligned_cols=193 Identities=27% Similarity=0.299 Sum_probs=145.4
Q ss_pred cEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccccCC-CCcEEeccCcccccccchhhhcccccce
Q 002800 496 RSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLY-NLETMELSWCISLKRLPQRMGQLINLWH 574 (879)
Q Consensus 496 r~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 574 (879)
..|++.. +.+...+..+..+..+..|++.++. +.++|..++.+. +|+.|++++| .+..+|..++.+++|+.
T Consensus 96 ~~l~~~~------~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 96 PSLDLNL------NRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKN 167 (394)
T ss_pred ceeeccc------cccccCchhhhcccceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccc
Confidence 3577776 5554445556777899999999999 999999888885 9999999998 78999888999999999
Q ss_pred EecCCcccccCCccCCCCCCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccce
Q 002800 575 LVNDGTSLSYMPKGIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLA 654 (879)
Q Consensus 575 L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~ 654 (879)
|++++|.+..+|...+.+++|+.|.+..+... .+ +..+.....|+.
T Consensus 168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~----------~l------------------------~~~~~~~~~L~~ 213 (394)
T COG4886 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS----------DL------------------------PPEIELLSALEE 213 (394)
T ss_pred cccCCchhhhhhhhhhhhhhhhheeccCCccc----------cC------------------------chhhhhhhhhhh
Confidence 99999999999987778888888876544331 11 111123345777
Q ss_pred EEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCCCCCCCccce
Q 002800 655 LYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPRLGELPSLES 734 (879)
Q Consensus 655 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~ 734 (879)
|.++.|.. ...+..+....++..|.+.++....+ +.+++.+++++.|++++| .+..++.++.+.+|+.
T Consensus 214 l~~~~N~~----------~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~ 281 (394)
T COG4886 214 LDLSNNSI----------IELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNN-QISSISSLGSLTNLRE 281 (394)
T ss_pred hhhcCCcc----------eecchhhhhcccccccccCCceeeec-cchhccccccceeccccc-cccccccccccCccCE
Confidence 77877632 11222334456677777777776665 678889999999999999 5667777999999999
Q ss_pred eecccccc
Q 002800 735 LTVRNMRR 742 (879)
Q Consensus 735 L~L~~~~~ 742 (879)
|++++...
T Consensus 282 L~~s~n~~ 289 (394)
T COG4886 282 LDLSGNSL 289 (394)
T ss_pred EeccCccc
Confidence 99988443
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.50 E-value=3.1e-06 Score=91.44 Aligned_cols=179 Identities=12% Similarity=0.113 Sum_probs=108.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i 158 (879)
.+++|+++.++.+.+++... ..+.+.|+|++|+||||+|+.+++.. ....+. ..++... ........+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGIDVIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchHHHHHH
Confidence 46899999999999998754 33457899999999999999998731 111121 1122221 1111111111
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhhc-Ccc
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINKM-GNT 236 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~-~~~ 236 (879)
+.++....+ .-...+-++++|+++....+....+...+......+++|+++... .+.... ...
T Consensus 89 i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 89 IKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 111110000 001234589999998765556667777776656667787777442 221111 223
Q ss_pred ceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 237 RMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 237 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
..+++.+++.++....+...+...+.. .. .+....+++.++|-+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE--IT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 578999999999999998877654331 12 334678889999887654
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.7e-06 Score=90.06 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=118.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc--ccceEEEEEeecchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT--HFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
..++|.++..+.+...+..+. -...+.|+|+.|+||||+|+.+++..--.. .+..... ..........+.+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-~~~~~~c~~c~~i~ 96 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-ADPDPASPVWRQIA 96 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-CCCCCCCHHHHHHH
Confidence 579999999999999998663 344678999999999999999987321100 0111100 00111112333332
Q ss_pred HH-------hccC--CC----CCchhHHHHHHHHHHHhh-----CCeeEEEeecccccchHhHHHHHHhccCCCCCcEEE
Q 002800 160 ES-------LKDG--VS----SDLVEIDTVLQQISHYIQ-----GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRIL 221 (879)
Q Consensus 160 ~~-------l~~~--~~----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 221 (879)
.. +... .. ...-.+++.. .+.+++. +++-++|+|+++..+......+...+........+|
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 22 1000 00 0111123322 3333332 456699999999988888888888887755556655
Q ss_pred EEccch-hhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 222 VTTCEE-NVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 222 iTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
++|... .+.... .....+++.+++.++..+++.+.+..... . .+....|++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~----~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGS----D---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCC----C---HHHHHHHHHHcCCCHHHHHHHH
Confidence 555443 332222 23468999999999999999874322110 1 2336688999999998665443
No 73
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.50 E-value=1.5e-06 Score=100.65 Aligned_cols=201 Identities=13% Similarity=0.082 Sum_probs=118.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc---ceEEEEEee-----cchHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF---SKRIWVSAS-----YPEIR 153 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s-----~~~~~ 153 (879)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+. .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 47999999999988887543 34568899999999999999998743322222 123455554 12222
Q ss_pred HHHHH---------------HHHhccCC-----------------CCCchhHHHHHHHHHHHhhCCeeEEEeecccccch
Q 002800 154 IARAI---------------LESLKDGV-----------------SSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYF 201 (879)
Q Consensus 154 ~~~~i---------------~~~l~~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 201 (879)
+...+ +...+... ..+.. ....+..+.+.+.++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 11111000 00011 12346778888888888888887777666
Q ss_pred HhHHHHHHhccCCCCCcEEEE--Eccchhh-hhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHH
Q 002800 202 NYWQQLMYSLKSGSEGSRILV--TTCEENV-INKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQV 277 (879)
Q Consensus 202 ~~~~~l~~~l~~~~~gs~iii--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i 277 (879)
..|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.++++.+.+..... ... .++...|
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v--~ls---~eal~~L 381 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV--HLA---AGVEELI 381 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC--CCC---HHHHHHH
Confidence 678888777776666655655 6665432 1111 12346789999999999999987653321 111 2234445
Q ss_pred HhhcCCChhHHHHHhhh
Q 002800 278 IRKCKNLPLAVKVIGSH 294 (879)
Q Consensus 278 ~~~~~glPLai~~~~~~ 294 (879)
.+++..-+-|+..++..
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 55544335555544433
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=3e-06 Score=96.71 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=118.4
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.......+ ... +..-...+.|..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~------~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI------TATPCGECDNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC------CCCCCCCCHHHHHHHc
Confidence 479999999999999998653 23446799999999999999998732111000 000 111111111111
Q ss_pred H-------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhh
Q 002800 161 S-------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVIN 231 (879)
Q Consensus 161 ~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~ 231 (879)
. +.........+..++.+.+... ..+++-++|+|+++....+.+..++..+.......++|++|.+. .+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0 0100011222333333333221 23566699999999988888899998888776677776666553 3332
Q ss_pred h-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 232 K-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 232 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
. ......+.+++++.++..+.+.+.+-..+.. .. .+....|++.++|.+--+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 2235789999999999999998765433221 11 334567899999977644333
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.1e-06 Score=95.56 Aligned_cols=201 Identities=18% Similarity=0.187 Sum_probs=117.1
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc--cc-----------------eE
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH--FS-----------------KR 142 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~-----------------~~ 142 (879)
.++||.+.....|...+..+. -...+.++|++|+||||+|+.+++....... +. ..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 479999988888888877552 2345789999999999999999873211100 00 11
Q ss_pred EEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEE
Q 002800 143 IWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRIL 221 (879)
Q Consensus 143 ~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 221 (879)
+.+..+ ...+..+...+.+.+... ..+++-++|+|+++....+..+.+...+........+|
T Consensus 89 ~el~aa-----------------~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAA-----------------SNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCc-----------------ccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 111111 011111222222222111 23456799999998765566777777776655555555
Q ss_pred EEccc-hhhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcC-CChhHHHHHhhhccc-
Q 002800 222 VTTCE-ENVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCK-NLPLAVKVIGSHLRF- 297 (879)
Q Consensus 222 iTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~-glPLai~~~~~~l~~- 297 (879)
++|.+ ..+...+ .....+++.+++.++....+.+.+...+.. .. .+....|++.++ +++.|+..+-.....
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~---~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--ID---REALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 44444 3333332 235689999999999999988877543321 11 334667887775 456777666553321
Q ss_pred --CCCHHHHHHHHh
Q 002800 298 --KRNIGEWLNVLK 309 (879)
Q Consensus 298 --~~~~~~w~~~~~ 309 (879)
+-+.+....++.
T Consensus 227 ~~~It~e~V~~~l~ 240 (472)
T PRK14962 227 EGKITLETVHEALG 240 (472)
T ss_pred CCCCCHHHHHHHHc
Confidence 134455554443
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.49 E-value=3.2e-06 Score=85.99 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=89.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
.+.+.|+|+.|+|||+||+.+++. ....-..+.++.+.. ... ......+.+ .. -
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~----~~~---------------~~~~~~~~~----~~-~ 98 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDK----RAW---------------FVPEVLEGM----EQ-L 98 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHH----Hhh---------------hhHHHHHHh----hh-C
Confidence 357889999999999999999983 332223345555431 000 000111111 11 2
Q ss_pred eEEEeecccccc-hHhHHHH-HHhccCC-CCC-cEEEEEccch---------hhhhhcCccceEeCCCCCHHhHHHHHHH
Q 002800 189 FLLVLDDVRSRY-FNYWQQL-MYSLKSG-SEG-SRILVTTCEE---------NVINKMGNTRMISLGTLSEEASWSLFCL 255 (879)
Q Consensus 189 ~LlVlDdv~~~~-~~~~~~l-~~~l~~~-~~g-s~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 255 (879)
-+|++||+.... ...|+.. ...+... ..| .++|+||+.. .+..++....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 378999997632 1345442 2222221 123 4799999864 3344455568999999999999999988
Q ss_pred HhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 256 VAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 256 ~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
++...+. ..+ +++..-|++.+.|-.-++..+-
T Consensus 179 ~a~~~~~--~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 179 RARLRGF--ELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHcCC--CCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 6654322 112 4456778888877655554433
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2.8e-06 Score=96.44 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=113.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHH-
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILE- 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~- 160 (879)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... +.. ...-...+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~p--Cg~C~sCr~i~~g 85 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEP--CGVCQSCTQIDAG 85 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCC--CcccHHHHHHhcc
Confidence 479999999999999998653 244678999999999999999987311111000 000 000000000000
Q ss_pred ------HhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhh
Q 002800 161 ------SLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINK 232 (879)
Q Consensus 161 ------~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~ 232 (879)
.+.........++.++++..... ..+++-++|+|+++.........+...+......+++|++|.+. .+...
T Consensus 86 ~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 86 RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred CccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 00000111112222222222111 13556689999998876667777888887655667777776553 22211
Q ss_pred -cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHH
Q 002800 233 -MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVK 289 (879)
Q Consensus 233 -~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~ 289 (879)
......+.+.+++.++..+.+.+.+-..+.. .. .+....|++.++|-+.-+.
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cC---HHHHHHHHHHhCCCHHHHH
Confidence 1233568889999999999998876554332 11 3447789999998885443
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.48 E-value=2.6e-06 Score=86.61 Aligned_cols=148 Identities=15% Similarity=0.096 Sum_probs=88.1
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
..+.|+|..|+|||+||+.+++. ..+....+.|+... +....+. +.+. .+ .+.-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~----~~~~~~~------------------~~~~-~l-~~~d 95 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQ----AAAGRLR------------------DALE-AL-EGRS 95 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHH----HhhhhHH------------------HHHH-HH-hcCC
Confidence 45899999999999999999883 33333345565532 1111100 1111 11 2335
Q ss_pred EEEeecccccc-hHhHHH-HHHhccC-CCCCcEEEEEccch---------hhhhhcCccceEeCCCCCHHhHHHHHHHHh
Q 002800 190 LLVLDDVRSRY-FNYWQQ-LMYSLKS-GSEGSRILVTTCEE---------NVINKMGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 190 LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
+||+||+.... ...|.. +...+.. ...|..||+|++.. .+..++.....+++++++.++-.+++.+.+
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 89999997531 123433 2222222 13466799999862 222333345689999999999999999877
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 258 FYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
...+.. .+ ++....|++.++|-.-++
T Consensus 176 ~~~~l~--l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRRGLA--LD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHcCCC--CC---HHHHHHHHHhCCCCHHHH
Confidence 643321 12 344667788877655444
No 79
>PTZ00202 tuzin; Provisional
Probab=98.47 E-value=7.2e-06 Score=86.77 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=105.3
Q ss_pred ccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHH
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARA 157 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 157 (879)
..+...|+||+++..+|...|...+. ...+++.|+|++|+|||||++.+... .. + .+++....+..++++.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~vNprg~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFVDVRGTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEECCCCHHHHHHH
Confidence 44567999999999999999975432 24468999999999999999999863 22 1 2333333578999999
Q ss_pred HHHHhccCCCCCc-hhHHHHHHHHHHHh-h-CCeeEEEeecccccch-HhHHHHHHhccCCCCCcEEEEEccchhhhhh-
Q 002800 158 ILESLKDGVSSDL-VEIDTVLQQISHYI-Q-GNRFLLVLDDVRSRYF-NYWQQLMYSLKSGSEGSRILVTTCEENVINK- 232 (879)
Q Consensus 158 i~~~l~~~~~~~~-~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~- 232 (879)
++.+++....... .-.+.+.+.+.+.- . +++.+||+-==+..+. ..+.+ ...+.....-|+|++----+.+.-.
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne-~v~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNE-VVALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHH-HHHHHccchhheeeeeehHhhcchhc
Confidence 9999983211111 12234444443322 2 5667777643222111 11111 1234455567788876554433211
Q ss_pred --cCccceEeCCCCCHHhHHHHHHHH
Q 002800 233 --MGNTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 233 --~~~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
+..-..|-+.+++.++|.+.-.+.
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhc
Confidence 123467899999999998876543
No 80
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=2.2e-08 Score=98.42 Aligned_cols=130 Identities=25% Similarity=0.304 Sum_probs=57.9
Q ss_pred CCCeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccC
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKL 521 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 521 (879)
.+.+..+++++|.+..+..++.-.+.+|.|+++.|. +.. . ..+..+.+|+.|||++ |.+.++-..-.+|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~-v-~nLa~L~~L~~LDLS~------N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR---IRT-V-QNLAELPQLQLLDLSG------NLLAECVGWHLKL 351 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc---eee-e-hhhhhcccceEeeccc------chhHhhhhhHhhh
Confidence 334444555555444444444444555555555441 111 1 1144445555555554 3444433333344
Q ss_pred CCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccc--hhhhcccccceEecCCcccccC
Q 002800 522 LHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLP--QRMGQLINLWHLVNDGTSLSYM 585 (879)
Q Consensus 522 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~l 585 (879)
-+.+.|.|++|. +..+. .+++|++|..||+++| .+..+. .+|++|+.|++|.+.+|++..+
T Consensus 352 GNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cCEeeeehhhhh-Hhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 444555555554 44442 2445555555555544 333332 2344555555555555544433
No 81
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.8e-08 Score=100.81 Aligned_cols=213 Identities=19% Similarity=0.099 Sum_probs=136.4
Q ss_pred CCCeeEEEEEecccCCCc--ccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcc--
Q 002800 442 NENIQHLMIKFETERKFP--TSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRG-- 517 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~--~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-- 517 (879)
.+++|.+++.+......+ .....++++|.|+++.|-... ...+..+...+++|+.|+|+. |.+....++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~------Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSS------NRLSNFISSNT 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhccccc------ccccCCccccc
Confidence 667888888887766433 256789999999999872111 222345578899999999998 544433222
Q ss_pred cccCCCCCEEecccCCCCc--ccCcccccCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCC--ccCCCCC
Q 002800 518 IRKLLHLRYLNLSRNSKIA--ELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMP--KGIERLT 593 (879)
Q Consensus 518 i~~L~~Lr~L~L~~~~~i~--~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~ 593 (879)
-..+.||+.|.|+.|. +. ++-.-....++|+.|+|.+|..+..--....-++.|+.|+|++|++..++ .-++.++
T Consensus 193 ~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 2468899999999998 54 23233456789999999998544333334456789999999999988776 3477888
Q ss_pred CCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchH
Q 002800 594 CLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDE 673 (879)
Q Consensus 594 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 673 (879)
.|..|+...++..+. . +..... ......++.|+.|.+..|+.. +-
T Consensus 272 ~L~~Lnls~tgi~si--~---~~d~~s----------------------~~kt~~f~kL~~L~i~~N~I~--------~w 316 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASI--A---EPDVES----------------------LDKTHTFPKLEYLNISENNIR--------DW 316 (505)
T ss_pred chhhhhccccCcchh--c---CCCccc----------------------hhhhcccccceeeecccCccc--------cc
Confidence 888887665554221 0 000000 011233567777777776542 12
Q ss_pred hhhcCCCCCCCccEEEEeeecCCc
Q 002800 674 DALEGLQVPPNLERLEIFYHRGNT 697 (879)
Q Consensus 674 ~~l~~l~~~~~L~~L~l~~~~~~~ 697 (879)
..+..+...++|+.|.+.++..+.
T Consensus 317 ~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 317 RSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccchhhccchhhhhhcccccccc
Confidence 233444555667777766665544
No 82
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=2.4e-07 Score=88.08 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=52.9
Q ss_pred CCCeeEEEEEecccCCCccccc-CCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCccc-c
Q 002800 442 NENIQHLMIKFETERKFPTSVY-NRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGI-R 519 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i-~ 519 (879)
+.+.|.|+++++.+..+ ..+. .+.+|++|++++|. +.. ++. +..++.|+.|++++ |.+..++..+ .
T Consensus 18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~---I~~-l~~-l~~L~~L~~L~L~~------N~I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ---ITK-LEG-LPGLPRLKTLDLSN------NRISSISEGLDK 85 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS-----S---TT-----TT--EEE--S------S---S-CHHHHH
T ss_pred ccccccccccccccccc-cchhhhhcCCCEEECCCCC---Ccc-ccC-ccChhhhhhcccCC------CCCCccccchHH
Confidence 55679999999988753 3444 57899999999983 322 333 77899999999999 8899887655 4
Q ss_pred cCCCCCEEecccCCCCcccC--cccccCCCCcEEeccCcccccccch----hhhcccccceEecC
Q 002800 520 KLLHLRYLNLSRNSKIAELP--ESLCDLYNLETMELSWCISLKRLPQ----RMGQLINLWHLVND 578 (879)
Q Consensus 520 ~L~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~ 578 (879)
.+++|+.|+|++|. |..+- ..+..+++|++|++.+| .+...+. .+..+++|+.||-.
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCE
Confidence 68999999999998 77654 35778999999999999 4555443 47789999999853
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.44 E-value=5.8e-06 Score=90.74 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=113.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccc--c------------------ccce
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVK--T------------------HFSK 141 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~------------------~f~~ 141 (879)
.+++|.++.++.+.+++..+. -...+.++|++|+||||+|+.++....-. . +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 478999999999999997643 34467899999999999999988631110 0 1111
Q ss_pred EEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEE
Q 002800 142 RIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRI 220 (879)
Q Consensus 142 ~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 220 (879)
+++... ......+..++.+.+... ..+++-++|+|+++.........+...+......+.+
T Consensus 89 -~~~~~~-----------------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 -IEIDAA-----------------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEeecc-----------------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 122111 001111122222222111 1244558899999776556677888888666667777
Q ss_pred EEEccchh-hhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 221 LVTTCEEN-VINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 221 iiTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
|++|.+.. +...+ .....+++.+++.++..+.+...+-..+.. .. .+.+..+++.++|-|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCChHHHHHHH
Confidence 77765543 22222 234578999999999999998876544321 11 3457788999999886654443
No 84
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=5.7e-06 Score=89.19 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=117.5
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEE----EEee-cchHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIW----VSAS-YPEIRIAR 156 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w----v~~s-~~~~~~~~ 156 (879)
.+++|.++.++.|.+.+..+. -...+.++|+.|+||+|+|..+++..--......... .+.. ...-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 479999999999999998763 2445789999999999999998873111110000000 0000 00001111
Q ss_pred HHHHHh-------cc---CCC---CCchhHHHHHHHHHHHhh-----CCeeEEEeecccccchHhHHHHHHhccCCCCCc
Q 002800 157 AILESL-------KD---GVS---SDLVEIDTVLQQISHYIQ-----GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGS 218 (879)
Q Consensus 157 ~i~~~l-------~~---~~~---~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 218 (879)
.+...- .. ... ...-.+++ +..+.+++. +++-++|+|+++..+......+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111000 00 000 00011233 222333332 456789999999988888888988888766677
Q ss_pred EEEEEccchh-hhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 219 RILVTTCEEN-VINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 219 ~iiiTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
.+|++|.+.+ +.... .....+.+.+++.++..+++...... . . .+....+++.++|.|+....+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~----~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L----P---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 7777777653 32222 23578999999999999999875421 1 1 1112578999999998665553
No 85
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.43 E-value=9.3e-07 Score=96.65 Aligned_cols=179 Identities=11% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
..++.|+++.+++|.+.+...-.. +-...+-+.|+|++|+|||++|+.+++ .....| +.+. ..+
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~--~~~ 191 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVV--GSE 191 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecc--hHH
Confidence 347899999999998877532110 112345588999999999999999998 444333 2222 011
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeeccccc-----------chH---hHHHHHHhccC--CCC
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSR-----------YFN---YWQQLMYSLKS--GSE 216 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~ 216 (879)
+..... + ........+.+.. ...+.+|++|+++.. +.+ .+..+...+.. ...
T Consensus 192 ----l~~~~~-g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 192 ----LVRKYI-G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred ----HHHHhh-h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 111111 0 0111122222222 346789999999752 112 22233333322 234
Q ss_pred CcEEEEEccchhhhhh-c----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh
Q 002800 217 GSRILVTTCEENVINK-M----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 217 gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP 285 (879)
+.+||.||...+.... + ..+..+++...+.++..++|..++.+.... . .-. ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-E-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-c-cCC----HHHHHHHcCCCC
Confidence 6778888876432211 1 124678999999999999999887654332 1 111 345667776654
No 86
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.41 E-value=1.1e-05 Score=79.39 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=66.9
Q ss_pred CCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCC
Q 002800 186 GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRS 263 (879)
Q Consensus 186 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 263 (879)
+.+-++|+||++....+.++.+...+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--IS 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--CC
Confidence 456689999998877777888988888766677787777653 222222 23468999999999999988876 1 21
Q ss_pred chhhHHHHHHHHHHHhhcCCChhH
Q 002800 264 DEEFQELEHIGRQVIRKCKNLPLA 287 (879)
Q Consensus 264 ~~~~~~l~~~~~~i~~~~~glPLa 287 (879)
.+.+..|++.++|.|..
T Consensus 171 -------~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 -------EEAAELLLALAGGSPGA 187 (188)
T ss_pred -------HHHHHHHHHHcCCCccc
Confidence 34478899999998853
No 87
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.9e-06 Score=91.55 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=114.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccc-------------------cccceE
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVK-------------------THFSKR 142 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 142 (879)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++..... ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 479999999999988887653 23467899999999999999998621000 011112
Q ss_pred EEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEE
Q 002800 143 IWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRIL 221 (879)
Q Consensus 143 ~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 221 (879)
+.+..+ ......+..++.+..... ..++.=++|+|+++....+..+.+...+....+.+++|
T Consensus 88 ~eidaa-----------------s~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAA-----------------SNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecc-----------------cCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 222221 011112222222222111 12455689999998877778888988888877778777
Q ss_pred EEccc-hhhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 222 VTTCE-ENVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 222 iTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
++|.+ ..+...+ .....+++.+++.++..+.+.+.+...+.. .. .+....|++.++|-+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 66644 3443332 245789999999999999998877654432 11 334678899998877543
No 88
>PRK05642 DNA replication initiation factor; Validated
Probab=98.40 E-value=6.4e-06 Score=83.69 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=92.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
...+.|+|..|+|||+||+.+++ .....-..++|++.. ++... . ..+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~----~~~~~---------------~----~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLA----ELLDR---------------G----PELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHH----HHHhh---------------h----HHHHHhhhhCC
Confidence 35688999999999999999987 333222345666542 11110 0 11222233222
Q ss_pred eEEEeeccccc-chHhHHH-HHHhccC-CCCCcEEEEEccchh---------hhhhcCccceEeCCCCCHHhHHHHHHHH
Q 002800 189 FLLVLDDVRSR-YFNYWQQ-LMYSLKS-GSEGSRILVTTCEEN---------VINKMGNTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 189 ~LlVlDdv~~~-~~~~~~~-l~~~l~~-~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
+||+||+... ....|+. +...+.. ...|..||+|++... +..++....++++++++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6788999643 1234544 4333332 234667888887632 2223334578999999999999999977
Q ss_pred hccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 257 AFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 257 a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
+...+. ..+ +++..-|++.+.|-.-++..+-..|
T Consensus 179 a~~~~~--~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGL--HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCC--CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 654322 112 3557778888877765554444333
No 89
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.8e-06 Score=91.84 Aligned_cols=197 Identities=10% Similarity=0.072 Sum_probs=113.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEe---ecchHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSA---SYPEIRIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~~~~~~~~i 158 (879)
.+++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+++...-...+....|... ....-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 479999999999999887652 2344779999999999999999873221111111111100 00001111111
Q ss_pred HHH-------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEcc-chhh
Q 002800 159 LES-------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTC-EENV 229 (879)
Q Consensus 159 ~~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v 229 (879)
... +.........+..++.+.+... ..+++-++|+|+++....+.++.+...+....+.+.+|++|. ...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 110 0000111112222222222111 124556889999988766788899988887767777766553 3333
Q ss_pred hhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 230 INKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 230 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
.... .....+++.+++.++..+.+...+-..+. ... .+.+..|++.++|.+--+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCC---HHHHHHHHHHcCCCHHHH
Confidence 3222 12457899999999998888876643322 111 344788999999977543
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.38 E-value=6.7e-06 Score=83.72 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=89.0
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN 187 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 187 (879)
..+.+.|+|..|+|||+||+.+++... .... ...+++.... .. .+ .. ...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~-~~-------~~-------------------~~-~~~ 90 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASP-LL-------AF-------------------DF-DPE 90 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHh-HH-------HH-------------------hh-ccc
Confidence 345678999999999999999998321 1121 2334433210 00 00 11 123
Q ss_pred eeEEEeecccccchHhHHHHHHhccCC-CCCc-EEEEEccchhhhh--------hcCccceEeCCCCCHHhHHHHHHHHh
Q 002800 188 RFLLVLDDVRSRYFNYWQQLMYSLKSG-SEGS-RILVTTCEENVIN--------KMGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 188 ~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iiiTtR~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
.-+||+||++..+...-+.+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347899999764333333454444331 2333 4677766533211 22234689999999988777776654
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 258 FYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
...+. ... ++....+++.+.|.+..+..+...+
T Consensus 171 ~~~~v--~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGL--QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCC--CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33222 112 3457778888999998887766655
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.2e-06 Score=92.27 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=112.4
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-------------------ccceE
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-------------------HFSKR 142 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 142 (879)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...... .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 479999999999999998653 234567999999999999999987321110 01111
Q ss_pred EEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEE
Q 002800 143 IWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRIL 221 (879)
Q Consensus 143 ~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 221 (879)
+++..+ ......+..++.+.+... ..+++-++|+|+++....+....+...+......+.+|
T Consensus 91 ~ei~~~-----------------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAA-----------------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeecc-----------------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 111111 011111222222221110 13556699999999877677888888888766677776
Q ss_pred EEccch-hhhhh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh-HHHHH
Q 002800 222 VTTCEE-NVINK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL-AVKVI 291 (879)
Q Consensus 222 iTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL-ai~~~ 291 (879)
++|.+. .+... ......+++++++.++..+.+.+.+...+.. .. .+....|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 666443 22212 1224688999999999998887766433321 11 3345778899999774 44443
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.6e-06 Score=92.92 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=114.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc--ceEEEEEee-cchHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF--SKRIWVSAS-YPEIRIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s-~~~~~~~~~i 158 (879)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++..-..... .. +... +..-...+.|
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~---~~~~pCg~C~~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGG---ITATPCGVCQACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccC---CCCCCCCccHHHHHH
Confidence 479999999999999988653 34566899999999999999997621110000 00 0000 1111111111
Q ss_pred HH-------HhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhh
Q 002800 159 LE-------SLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENV 229 (879)
Q Consensus 159 ~~-------~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v 229 (879)
.. .+........++..++.+.+... ..++.=++|+|+|+....+.+..+...+.......++|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 00 00000011111222222221111 1234458899999998888888898888876666677665544 333
Q ss_pred hhh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHH
Q 002800 230 INK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKV 290 (879)
Q Consensus 230 ~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~ 290 (879)
... ......+++++++.++..+.+.+.+...+.. .. .+....|++.++|-+--+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 322 2345789999999999999998876544332 11 33467788899887754433
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=9e-06 Score=88.39 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=112.5
Q ss_pred CceeeehhhHHHHHHHHhcCCCC----CCCCccEEEEEcCCcchHHHHHHHHhccccccc------------------cc
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSE----KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT------------------HF 139 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f 139 (879)
++++|.+..++.|.+++..+... +..-...+.++|++|+|||++|+.++....-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46899999999999999865310 001234577999999999999999976211110 01
Q ss_pred ceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCc
Q 002800 140 SKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGS 218 (879)
Q Consensus 140 ~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 218 (879)
+...++... +......++..+.+.+... ..+++-++|+|+++.........+...+....++.
T Consensus 85 pD~~~i~~~----------------~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~ 148 (394)
T PRK07940 85 PDVRVVAPE----------------GLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRT 148 (394)
T ss_pred CCEEEeccc----------------cccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCC
Confidence 111111100 0111112222222222111 12445588889999877777777888887766777
Q ss_pred EEEEEccch-hhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 219 RILVTTCEE-NVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 219 ~iiiTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
.+|++|.+. .+.... .....+.+.+++.++..+.+..... .+ .+.+..+++.++|.|.....+
T Consensus 149 ~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~~-------~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 149 VWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---VD-------PETARRAARASQGHIGRARRL 213 (394)
T ss_pred eEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---CC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 777777664 333222 2357899999999999988874321 11 233678899999999755444
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.5e-06 Score=91.48 Aligned_cols=181 Identities=15% Similarity=0.085 Sum_probs=112.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-------------------ccceE
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-------------------HFSKR 142 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 142 (879)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++..--.. .|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 479999999999999997653 234567999999999999999987321111 11112
Q ss_pred EEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEE
Q 002800 143 IWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRIL 221 (879)
Q Consensus 143 ~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 221 (879)
+.+..+ ......+..++.+.+... ..++.-++|+|+|+....+....+...+......+++|
T Consensus 91 ~eidaa-----------------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAA-----------------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEccc-----------------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 222211 011112222222222111 12455689999999877778888888888776777777
Q ss_pred EEccc-hhhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHH
Q 002800 222 VTTCE-ENVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVK 289 (879)
Q Consensus 222 iTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~ 289 (879)
++|.+ ..+.... .....+++++++.++..+.+.+.+-..+.. .. .+....|++.++|-+.-+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCcHHHHH
Confidence 66544 3332221 234678999999999888776665443322 11 2335678888888775443
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.33 E-value=8.6e-06 Score=81.96 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=87.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
.+.+.|+|+.|+|||+|++.++.. .. ..+++.. .+..+++..+. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~~-----~~~i~~~----~~~~~~~~~~~----------------------~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--SD-----ALLIHPN----EIGSDAANAAA----------------------E-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--cC-----CEEecHH----HcchHHHHhhh----------------------c--
Confidence 466899999999999999998863 11 1133321 11111111111 1
Q ss_pred eEEEeeccccc--chHhHHHHHHhccCCCCCcEEEEEccc---------hhhhhhcCccceEeCCCCCHHhHHHHHHHHh
Q 002800 189 FLLVLDDVRSR--YFNYWQQLMYSLKSGSEGSRILVTTCE---------ENVINKMGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 189 ~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iiiTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
-+|++||+... +.+.+-.+...+.. .|..||+|++. ++...++....++++++++.++-.+++.+.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 27888999653 22333333333332 35678988874 3344555667899999999999999999887
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 258 FYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
...+. ..+ +++..-|++.+.|-.-++..+
T Consensus 167 ~~~~~--~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 167 ADRQL--YVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHcCC--CCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 65332 122 445677788777777666543
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.31 E-value=2.1e-05 Score=77.86 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=110.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.+|||.++-+++|.=.+..... .+...--|.++|++|.||||||.-+++ +....+.. .
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~----t--------------- 83 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI----T--------------- 83 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe----c---------------
Confidence 4799999888888766655432 334667789999999999999999998 44333311 1
Q ss_pred hccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCC--------CCCcEEE-----------E
Q 002800 162 LKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSG--------SEGSRIL-----------V 222 (879)
Q Consensus 162 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs~ii-----------i 222 (879)
..........+...+.. |+ ..=++.+|.++......-+-+..++.+. ++++|.| .
T Consensus 84 ----sGp~leK~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 84 ----SGPALEKPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred ----ccccccChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 01111111222222222 22 2335677999876555555555554432 4555543 6
Q ss_pred EccchhhhhhcC--ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHH
Q 002800 223 TTCEENVINKMG--NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVK 289 (879)
Q Consensus 223 TtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~ 289 (879)
|||...+...+. -..+.+++..+.+|-.+...+.|..-+.. .. ++-+.+|+++..|-|--..
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~---~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--ID---EEAALEIARRSRGTPRIAN 221 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CC---hHHHHHHHHhccCCcHHHH
Confidence 898765544332 23567899999999999999888543332 12 3458899999999996443
No 97
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.5e-05 Score=91.28 Aligned_cols=193 Identities=12% Similarity=0.082 Sum_probs=117.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc-------ceEEEEEeecchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF-------SKRIWVSASYPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-------~~~~wv~~s~~~~~~ 154 (879)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++........ +.+-+ -..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~-------c~~ 91 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV-------GEH 91 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc-------cHH
Confidence 479999999999999998653 34467799999999999999998732111110 11111 011
Q ss_pred HHHHHHHh-------ccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEc-c
Q 002800 155 ARAILESL-------KDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTT-C 225 (879)
Q Consensus 155 ~~~i~~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-R 225 (879)
.+.|...- .........++.++++.+... ..+++=++|+|+++.......+.+...+......+.+|++| .
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 11111110 000111222333333332211 12445578999998877777888888888776777776655 3
Q ss_pred chhhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 226 EENVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 226 ~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
...+...+ .....+++.+++.++....+.+.+...+.. .. .+....|++.++|-+.-+...
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 33333222 234689999999999999998876544321 11 244678899999988655443
No 98
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=1.2e-06 Score=88.95 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=59.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHHHHHHHhccCCCCCc-----hhHHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIARAILESLKDGVSSDL-----VEIDTVLQQ 179 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~i~~~l~~~~~~~~-----~~~~~~~~~ 179 (879)
-..++|+|++|+|||||++.++++.... +|+.++|+.+. .+..++++++...+-....... .-.....+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4467899999999999999999964433 89999999976 5788888888333321111111 111122223
Q ss_pred HHHH-hhCCeeEEEeecccc
Q 002800 180 ISHY-IQGNRFLLVLDDVRS 198 (879)
Q Consensus 180 l~~~-l~~k~~LlVlDdv~~ 198 (879)
...+ -.+++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 3322 248899999999965
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.5e-05 Score=90.19 Aligned_cols=199 Identities=14% Similarity=0.136 Sum_probs=117.5
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++........... .+..-...+.|...
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-----pCg~C~sC~~i~~g 85 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-----PCNTCEQCRKVTQG 85 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-----CCcccHHHHHHhcC
Confidence 478999988888888887643 24567789999999999999999732211100000 00111111111111
Q ss_pred h-------ccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhh
Q 002800 162 L-------KDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINK 232 (879)
Q Consensus 162 l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~ 232 (879)
. .........+...+.+.+... ..+++-++|+|+++....+.+..|...+........+|++|.+ ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 0 000011112222222222211 2355668999999887777888888888765556666665555 333322
Q ss_pred c-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh-hHHHHHhhhc
Q 002800 233 M-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP-LAVKVIGSHL 295 (879)
Q Consensus 233 ~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP-Lai~~~~~~l 295 (879)
+ .....+++++++.++..+.+...+...+.. .. .+.+..|++.++|-+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 234678999999999999998876544321 11 344778888999854 6777665444
No 100
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.31 E-value=1e-05 Score=80.95 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=114.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEE-EEee-cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIW-VSAS-YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s-~~~~~~~~~i~ 159 (879)
.+++|.+..++.|.+.+... ..+....+|++|.|||+-|+.++...--.+-|.+++- .++| ..=..+.++=+
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 57999999999999999873 5778889999999999999998873222344555432 2333 10000000000
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHh--hCCe-eEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhhc-C
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYI--QGNR-FLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINKM-G 234 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~-~ 234 (879)
.+...+.....+.. .-++ =.+|||+++....+.|..+...+......+|.|+.+-. ..+...+ .
T Consensus 110 -----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 110 -----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 01111111110000 1123 47889999998889999999999887777776555544 2222221 1
Q ss_pred ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCC
Q 002800 235 NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNL 284 (879)
Q Consensus 235 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~gl 284 (879)
...-+..++|.+++...-+...+-..+.. .. .+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d---~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVD--ID---DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCC--CC---HHHHHHHHHHcCCc
Confidence 23568899999999999998888766553 12 33467888888883
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=2.2e-05 Score=87.43 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=102.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHhccccccccc--ceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHF--SKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
..-+.|+|..|+|||+|++.+++ .+.... ..++++. ..++...+...+. ... ...+.+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~----~~~f~~~~~~~l~-~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS----GDEFARKAVDILQ-KTH-------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE----HHHHHHHHHHHHH-Hhh-------hHHHHHHHHhc-
Confidence 34578999999999999999998 333221 2234443 3566667766665 110 11233344333
Q ss_pred CeeEEEeecccccc--hHhHHHHHHhccC-CCCCcEEEEEccch---------hhhhhcCccceEeCCCCCHHhHHHHHH
Q 002800 187 NRFLLVLDDVRSRY--FNYWQQLMYSLKS-GSEGSRILVTTCEE---------NVINKMGNTRMISLGTLSEEASWSLFC 254 (879)
Q Consensus 187 k~~LlVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 254 (879)
+.-+||+||+.... ....+.+...+.. ...|..||+|+... .+..++...-++.+++++.++..+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34488899997542 1222334333332 23445788887643 223334456788999999999999999
Q ss_pred HHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 255 LVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 255 ~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
+++-..+.....+ +++..-|++.++|.|-.+.-+...+
T Consensus 286 ~~~~~~gl~~~l~---~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 286 KEIKNQNIKQEVT---EEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHhcCCCCCCC---HHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8875432100111 4567889999999997776555433
No 102
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=1.2e-07 Score=93.28 Aligned_cols=127 Identities=25% Similarity=0.269 Sum_probs=79.4
Q ss_pred CCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccc
Q 002800 464 NRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLC 543 (879)
Q Consensus 464 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~ 543 (879)
..+.|..+++++|. +. .+..+.+-.+.+|+|++++ |.+..+-. +..|.+|..|+|++|. +.++-..-.
T Consensus 282 TWq~LtelDLS~N~---I~-~iDESvKL~Pkir~L~lS~------N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNL---IT-QIDESVKLAPKLRRLILSQ------NRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHL 349 (490)
T ss_pred hHhhhhhccccccc---hh-hhhhhhhhccceeEEeccc------cceeeehh-hhhcccceEeecccch-hHhhhhhHh
Confidence 34556666666662 22 2344455666777777776 55555432 6666777777777776 666655555
Q ss_pred cCCCCcEEeccCcccccccchhhhcccccceEecCCcccccCC--ccCCCCCCCCcCCceeec
Q 002800 544 DLYNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLSYMP--KGIERLTCLRTLNEFIVS 604 (879)
Q Consensus 544 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~~ 604 (879)
+|-|.++|.|.+| .+..+ +++++|-+|..||+.+|++..+- .+||+++.|+++.+..+.
T Consensus 350 KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 6667777777776 45544 45677777777777777766442 457777777777655443
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=2.1e-05 Score=78.93 Aligned_cols=182 Identities=14% Similarity=0.161 Sum_probs=101.2
Q ss_pred eeeeh-hhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccc--eEEEEEeecchHHHHHHHHH
Q 002800 84 VIVRD-GEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFS--KRIWVSASYPEIRIARAILE 160 (879)
Q Consensus 84 ~vGr~-~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~i~~ 160 (879)
++|.. +........+..... .....+.|+|..|+|||+|.+++++ .+.+... .+++++ ..++...+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~----~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS----AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE----HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec----HHHHHHHHHH
Confidence 35642 333344444444321 2345678999999999999999998 4443322 255555 3566666666
Q ss_pred HhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccch-HhHHH-HHHhccC-CCCCcEEEEEccch---------h
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYF-NYWQQ-LMYSLKS-GSEGSRILVTTCEE---------N 228 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iiiTtR~~---------~ 228 (879)
.+. . ... ..+++.++ .-=+|++||++.... ..|.. +...+.. ...|-+||+|++.. .
T Consensus 82 ~~~-~-----~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 82 ALR-D-----GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHH-T-----TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHH-c-----ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 665 2 111 23334444 334788999977422 23333 2222222 13466899999653 2
Q ss_pred hhhhcCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHH
Q 002800 229 VINKMGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKV 290 (879)
Q Consensus 229 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~ 290 (879)
+..++...-++++++.+.++..+++.+.|...+.. .+ ++++.-|++.+.+..-.+..
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~---~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LP---EEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S----HHHHHHHHHHTTSSHHHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--Cc---HHHHHHHHHhhcCCHHHHHH
Confidence 23334456789999999999999999988755442 22 44466677776655444433
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=1.5e-06 Score=101.53 Aligned_cols=93 Identities=34% Similarity=0.485 Sum_probs=73.5
Q ss_pred cccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcccccc
Q 002800 494 CLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQLINLW 573 (879)
Q Consensus 494 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 573 (879)
.++.|+|++ +..-..+|..++.|++|++|+|++|.....+|..++.+.+|++|+|++|.....+|..+++|++|+
T Consensus 419 ~v~~L~L~~-----n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDN-----QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCC-----CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 377788887 222346788888888999999988884458888888889999999988865567888888899999
Q ss_pred eEecCCcccc-cCCccCCC
Q 002800 574 HLVNDGTSLS-YMPKGIER 591 (879)
Q Consensus 574 ~L~l~~~~l~-~lp~~i~~ 591 (879)
+|++++|.+. .+|..++.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EEECcCCcccccCChHHhh
Confidence 9999888876 77776654
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=4.3e-05 Score=87.99 Aligned_cols=193 Identities=11% Similarity=0.129 Sum_probs=114.1
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHH-
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILE- 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~- 160 (879)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.++...-.....+ .+-.+ ........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC-----~~C~~~~~~ 85 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPC-----QECIENVNN 85 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCch-----hHHHHhhcC
Confidence 479999999999999998653 345567899999999999999987311111000 00000 00000000
Q ss_pred -----HhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEc-cchhhhhh-
Q 002800 161 -----SLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTT-CEENVINK- 232 (879)
Q Consensus 161 -----~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~- 232 (879)
.+.........+.+++++.+... ..+++-++|+|+++....+.+..+...+........+|++| +...+...
T Consensus 86 ~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 00000011122233333333321 12556689999998877778888888887765566655555 44444322
Q ss_pred cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh-HHHHH
Q 002800 233 MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL-AVKVI 291 (879)
Q Consensus 233 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL-ai~~~ 291 (879)
......+++.+++.++..+.+...+...+.. .. .+.+..|++.++|-+- |+..+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENIS--YE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2335689999999999998888765443321 11 2346788999988664 44443
No 106
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=7.2e-06 Score=90.00 Aligned_cols=161 Identities=11% Similarity=0.141 Sum_probs=92.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCC-------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESS-------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
..++.|+++.++++.+.+...-. -+-...+-|.++|++|+|||++|+.+++ +.... |+.++. .+
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~--~~ 200 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG--SE 200 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh--HH
Confidence 34678999999999887643210 0112455688999999999999999998 33332 333331 11
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeeccccc-----------chHhHHHHHHhc---cC--CCC
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSR-----------YFNYWQQLMYSL---KS--GSE 216 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~ 216 (879)
+..... +. .......+.+.. ...+.+|++|+++.. +.+....+...+ .. ...
T Consensus 201 ----l~~~~~-g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 201 ----LVQKFI-GE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred ----HhHhhc-cc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111111 10 111222222222 346789999999752 112222333333 21 123
Q ss_pred CcEEEEEccchhhhhh-c----CccceEeCCCCCHHhHHHHHHHHhccCC
Q 002800 217 GSRILVTTCEENVINK-M----GNTRMISLGTLSEEASWSLFCLVAFYWR 261 (879)
Q Consensus 217 gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~ 261 (879)
+..||.||...+.... + .-+..+++.+.+.++..++|..+..+..
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~ 319 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN 319 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC
Confidence 5677878876433221 1 1245799999999999999998775443
No 107
>PF14516 AAA_35: AAA-like domain
Probab=98.21 E-value=0.00015 Score=77.80 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=119.0
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-------cchH
Q 002800 80 DSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-------YPEI 152 (879)
Q Consensus 80 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-------~~~~ 152 (879)
+.+..|+|...-+++.+.+..+. ..+.|.|+-.+|||+|...+.+..+- ..| .+++++.. .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 34456789867777777776532 37899999999999999999873222 233 35567665 2455
Q ss_pred HHHHHHHHHhccCCCCC----------chhHHHHHHHHHHHh---hCCeeEEEeecccccch-----HhH-HHHHHhccC
Q 002800 153 RIARAILESLKDGVSSD----------LVEIDTVLQQISHYI---QGNRFLLVLDDVRSRYF-----NYW-QQLMYSLKS 213 (879)
Q Consensus 153 ~~~~~i~~~l~~~~~~~----------~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~-----~~~-~~l~~~l~~ 213 (879)
.+++.++..+...-... ..........+.+++ .+++.+|++|+|+..-. +++ ..+......
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 56666666554221111 011223333444433 26899999999986311 122 222222221
Q ss_pred CC----CCcEEEEEccchh--hhhh-----cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcC
Q 002800 214 GS----EGSRILVTTCEEN--VINK-----MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCK 282 (879)
Q Consensus 214 ~~----~gs~iiiTtR~~~--v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~ 282 (879)
.. ..+-.+|.....+ .... ......++|++|+.+|...|..++..... ....++|...++
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---------~~~~~~l~~~tg 230 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS---------QEQLEQLMDWTG 230 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC---------HHHHHHHHHHHC
Confidence 11 1111222222211 1111 12245789999999999999987753321 112788999999
Q ss_pred CChhHHHHHhhhcccC
Q 002800 283 NLPLAVKVIGSHLRFK 298 (879)
Q Consensus 283 glPLai~~~~~~l~~~ 298 (879)
|+|--+..++..+..+
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999998654
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4.7e-05 Score=86.65 Aligned_cols=197 Identities=14% Similarity=0.081 Sum_probs=117.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-..... +-. ...-...+.|...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~p--Cg~C~~C~~i~~~ 82 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATP--CGVCESCVALAPN 82 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCc--ccccHHHHHhhcc
Confidence 479999999999999998653 234567999999999999999987311111000 000 0000111111110
Q ss_pred ---------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhh
Q 002800 162 ---------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVI 230 (879)
Q Consensus 162 ---------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~ 230 (879)
+.........+..++.+.+... ..+++=++|+|+++....+....|...+........+|++|.+ ..+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0100111223333333333221 1245558899999987778888898888877667776665544 4333
Q ss_pred hh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh-HHHHHhh
Q 002800 231 NK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL-AVKVIGS 293 (879)
Q Consensus 231 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL-ai~~~~~ 293 (879)
.. ......+++.+++.++..+.+.+.+...+.. .. .+....|++.++|-+- |+..+-.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 32 2235789999999999998888766544321 11 2346778889999764 4444433
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.8e-05 Score=83.59 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=108.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccc------ccccceEEEEEeecchHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV------KTHFSKRIWVSASYPEIRIA 155 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------~~~f~~~~wv~~s~~~~~~~ 155 (879)
.+++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+.+...- ...|...+ +....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~------ 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDA------ 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEecc------
Confidence 478999999999999997653 3457889999999999999999873111 01121111 01100
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHH-HhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhh-
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISH-YIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINK- 232 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~- 232 (879)
.......+...+.+.+.. -..+++-++++|+++......+..+...+......+.+|++|.. ..+...
T Consensus 85 ---------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 85 ---------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred ---------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 000111112222221111 01234557999999876556777787777655555566655533 333222
Q ss_pred cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 233 MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 233 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
......+++.+++.++....+...+...+.. .. .+.+..+++.++|-+-.+
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHhCCCCHHHH
Confidence 1234578999999999999998877654431 11 344777888888865433
No 110
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=3e-05 Score=82.10 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=134.0
Q ss_pred ccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHH
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIA 155 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~ 155 (879)
...+..++||+.|+..+..++...-. .+...-+.|.|-+|.|||.+...++.+..-...=..++++... ....+++
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 34567899999999999999976532 2345567899999999999999999853221111133455443 6778888
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHhhCC--eeEEEeecccccchHhHHHHHHhccC-CCCCcEEEEEccchh--h-
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHYIQGN--RFLLVLDDVRSRYFNYWQQLMYSLKS-GSEGSRILVTTCEEN--V- 229 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~--v- 229 (879)
..|...+.......... .+....+.++..+. .+|+|+|.++.-....-+.+...|.+ .-+++|+|+.---.. .
T Consensus 224 ~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 88888883122222222 44455555555543 58999999876322222333344443 346777665332111 1
Q ss_pred ---hhhc-----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhc
Q 002800 230 ---INKM-----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHL 295 (879)
Q Consensus 230 ---~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l 295 (879)
...+ .....+...|.+.++-.++|..+.-...........++-.|++++.-.|-+--|+-+.-+.+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 13567889999999999999998765544323334555566666666677777776665544
No 111
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=3.8e-06 Score=98.14 Aligned_cols=106 Identities=24% Similarity=0.270 Sum_probs=89.1
Q ss_pred CccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccc-cccCcccccCCCCCEEecccCCCCcccCcccccC
Q 002800 467 RLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVI-KRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDL 545 (879)
Q Consensus 467 ~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l-~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L 545 (879)
.++.|.+.++ .+...+|..+.++++|+.|+|++ +.+ ..+|..++.+++|++|+|++|.....+|..+++|
T Consensus 419 ~v~~L~L~~n---~L~g~ip~~i~~L~~L~~L~Ls~------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQ---GLRGFIPNDISKLRHLQSINLSG------NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCC---CccccCCHHHhCCCCCCEEECCC------CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 4777888776 34455677799999999999999 455 4789899999999999999999556899999999
Q ss_pred CCCcEEeccCcccccccchhhhcc-cccceEecCCcc
Q 002800 546 YNLETMELSWCISLKRLPQRMGQL-INLWHLVNDGTS 581 (879)
Q Consensus 546 ~~L~~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~ 581 (879)
++|++|+|++|.....+|..++.+ .++..+++.+|.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 999999999997777899988764 567788888875
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=4.3e-05 Score=85.19 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=111.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc-ce-EEEEEeecchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF-SK-RIWVSASYPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~-~~wv~~s~~~~~~~~~i~ 159 (879)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-...- +. .+-.|.+ .+.+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~------C~~i~ 85 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS------CKEIS 85 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH------HHHHh
Confidence 479999999999999997653 23557789999999999999998731110000 00 0000000 00000
Q ss_pred -------HHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhh
Q 002800 160 -------ESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVI 230 (879)
Q Consensus 160 -------~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~ 230 (879)
..+.........+..++.+.+... ..+++-++|+|+++....+..+.+...+........+|++|.+ ..+.
T Consensus 86 ~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 86 SGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred cCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 000000011112222222222111 1255668899999876556677788888776667777766643 2332
Q ss_pred hhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh-HHHHH
Q 002800 231 NKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL-AVKVI 291 (879)
Q Consensus 231 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL-ai~~~ 291 (879)
..+ .....+++.+++.++..+.+...+-..+.. .. .+.+..|++.++|-+- |+..+
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 221 235689999999999998888766443321 11 3447788999999664 44433
No 113
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.9e-05 Score=88.82 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=116.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.......... +- ........+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--~~--~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--GR--PCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CC--CCccCHHHHHHhcC
Confidence 479999999999999887653 2345679999999999999999873211110000 00 01112222233221
Q ss_pred hcc------C-CCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhh
Q 002800 162 LKD------G-VSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINK 232 (879)
Q Consensus 162 l~~------~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~ 232 (879)
... . ......+..++++.+... ..+++-++|+|+++....+..+.+...+......+.+|++|.+ ..+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 110 0 011112222222222211 1245668999999877667788888888776667777766644 333222
Q ss_pred c-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 233 M-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 233 ~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
. .....+++.+++.++....+.+.+...+.. .. .+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 234678899999999998888776544321 11 344778999999988655443
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.4e-05 Score=88.45 Aligned_cols=199 Identities=11% Similarity=0.106 Sum_probs=113.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEe---ecchHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSA---SYPEIRIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~~~~~~~~i 158 (879)
.++||.+..+..|.+++..+. -...+.++|+.|+||||+|+.+++.......++.-.|... ....-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 479999999999999887653 2344779999999999999999873221111110011100 00011111111
Q ss_pred HHH-------hccCCCCCchhHHHHHHHHHH-HhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEc-cchhh
Q 002800 159 LES-------LKDGVSSDLVEIDTVLQQISH-YIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTT-CEENV 229 (879)
Q Consensus 159 ~~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v 229 (879)
... +.........++..+.+.+.. -..+++=++|+|+++.......+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110 000011112223333322211 022445578999998876677888888888766666665555 33344
Q ss_pred hhh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh-HHHH
Q 002800 230 INK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL-AVKV 290 (879)
Q Consensus 230 ~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL-ai~~ 290 (879)
... ......+++.+++.++....+.+.+...+.. .. .+.+..|++.++|-.- |+..
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~---~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--ID---ADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHhCCCHHHHHHH
Confidence 332 2345789999999999888887765433221 11 3447789999999554 4443
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=4.3e-05 Score=90.56 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=115.1
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++........... - +..-...+.|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~--p---Cg~C~sC~~~~~g 84 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST--P---CGECDSCVALAPG 84 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC--C---CcccHHHHHHHcC
Confidence 479999999999999998653 23457799999999999999998742211111000 0 0000001111100
Q ss_pred ---------hccCCCCCchhHHHHHHHHHH-HhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhh
Q 002800 162 ---------LKDGVSSDLVEIDTVLQQISH-YIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVI 230 (879)
Q Consensus 162 ---------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~ 230 (879)
+.........+..++.+.+.. -..++.=++|||+++....+.+..|+..+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 010011122223333222211 12345558899999998888888999999887777777766644 3343
Q ss_pred hhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 231 NKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 231 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
..+ .....|++.+++.++..+.+.+..-..+.. .. .+....|++.++|-+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 332 245789999999999988887765433221 11 233567899999987444
No 116
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=6.3e-05 Score=84.40 Aligned_cols=195 Identities=11% Similarity=0.101 Sum_probs=112.1
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccc--ccc-cceEEEEEeecchHHHHH--
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV--KTH-FSKRIWVSASYPEIRIAR-- 156 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~-f~~~~wv~~s~~~~~~~~-- 156 (879)
.+++|.+..++.|.+++..+. -.....++|+.|+||||+|+.++..... ... ..|.. |.+ -..+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~--c~n--c~~i~~g~ 86 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK--CEN--CVEIDKGS 86 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc--cHH--HHHHhcCC
Confidence 478999999999999997653 3345678999999999999998873110 000 01100 000 000000
Q ss_pred --HHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEc-cchhhhhh
Q 002800 157 --AILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTT-CEENVINK 232 (879)
Q Consensus 157 --~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~ 232 (879)
++. .+.........+...+.+.+... ..+++-++|+|+++....+..+.+...+....+...+|++| +...+...
T Consensus 87 ~~d~~-eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 87 FPDLI-EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred CCcEE-EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHH
Confidence 000 00000111122223333322211 13556699999998776667788888887765566666555 33333322
Q ss_pred -cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 233 -MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 233 -~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
......+.+.+++.++....+...+-..+.. .. .+.+..|++.++|.+..+...
T Consensus 166 I~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 166 ILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1234679999999999998888776544322 11 234667888899976544433
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=8e-05 Score=83.49 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=115.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccc--ccccceEEEEEeecchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV--KTHFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
.++||.+...+.|...+..+. -..+..++|+.|+||||+|+.+++..-- ...+.. +-+|-+ .+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p-C~~C~~------C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP-CDTCIQ------CQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC-CcccHH------HHHHh
Confidence 479999999999999997653 3445679999999999999988763110 001000 000000 00000
Q ss_pred HHhc----cCCCCCchhHHHHHHHHHHH----hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhh
Q 002800 160 ESLK----DGVSSDLVEIDTVLQQISHY----IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVI 230 (879)
Q Consensus 160 ~~l~----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~ 230 (879)
.... ..........+++.+.+... ..+++=++|+|+++....+....+...+....+.+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 0000 00000001122333322221 11445688999999887778888888888776777877777653 222
Q ss_pred hh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 231 NK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 231 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
.. ......+++.+++.++..+.+.+.+...+.. .. .+.+..|++.++|-+--+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCcHHHHHHH
Confidence 11 1235689999999999999888766544332 11 345778999999988544443
No 118
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.9e-05 Score=86.51 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=114.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.+++|.+...+.|.+++.... -...+.++|+.|+||||+|+.+++..-.. ..+.. .......-...+.+...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~--~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP--TPEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC--CCCCCcccHHHHHHhcC
Confidence 478999999999999998653 23457799999999999999998732111 11000 00001111222222211
Q ss_pred hc-------cCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhh
Q 002800 162 LK-------DGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINK 232 (879)
Q Consensus 162 l~-------~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~ 232 (879)
.. ...........++++.+... ..+++=++|+|+++....+.+..+...+........+|++|.+. .+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11 00011112222222222111 12445588999999877778888988888765566666555443 33222
Q ss_pred c-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 233 M-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 233 ~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
+ .....+++.+++.++....+.+.+...+.. .. .+.+..|++.++|-+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 234678889999999888887766543221 11 234778899999987655443
No 119
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=2.7e-06 Score=66.09 Aligned_cols=57 Identities=37% Similarity=0.514 Sum_probs=28.4
Q ss_pred CCCEEecccCCCCcccCc-ccccCCCCcEEeccCcccccccch-hhhcccccceEecCCcc
Q 002800 523 HLRYLNLSRNSKIAELPE-SLCDLYNLETMELSWCISLKRLPQ-RMGQLINLWHLVNDGTS 581 (879)
Q Consensus 523 ~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 581 (879)
+|++|++++|+ +..+|. .+.++++|++|++++| .+..+|. .+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555554 555542 3445555555555544 3444432 34555555555555553
No 120
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=0.0001 Score=75.36 Aligned_cols=201 Identities=16% Similarity=0.151 Sum_probs=115.5
Q ss_pred CCceeeeh---hhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccc-----cccceEEEEEee--cc
Q 002800 81 SSQVIVRD---GEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVK-----THFSKRIWVSAS--YP 150 (879)
Q Consensus 81 ~~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-----~~f~~~~wv~~s--~~ 150 (879)
.+..||-. +.+++|.+++..+.. ...+-+.|||..|+|||++++++.+..... ..+ .++.|... .+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~ 108 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPD 108 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCC
Confidence 45566653 456777777776642 455668999999999999999999631111 111 24455554 89
Q ss_pred hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC-CeeEEEeeccccc------chHhHHHHHHhccCCCCCcEEEEE
Q 002800 151 EIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG-NRFLLVLDDVRSR------YFNYWQQLMYSLKSGSEGSRILVT 223 (879)
Q Consensus 151 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iiiT 223 (879)
...+...|+.+++. ..........+...+...++. +-=+||+|++.+. .+...-.....+...-.=+-|.+-
T Consensus 109 ~~~~Y~~IL~~lga-P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 109 ERRFYSAILEALGA-PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred hHHHHHHHHHHhCc-ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 99999999999983 333334444555555555543 3348899999772 112222233334333344556676
Q ss_pred ccchhhhhh-----cCccceEeCCCCCHH-hHHHHHHHHh--ccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 224 TCEENVINK-----MGNTRMISLGTLSEE-ASWSLFCLVA--FYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 224 tR~~~v~~~-----~~~~~~~~l~~L~~~-e~~~Lf~~~a--~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
|++---+-. .....++.+.....+ |...|+.... ..-..+ ..-...+++..|.+.++|+.=-+
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~--S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP--SNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC--CCCCCHHHHHHHHHHcCCchHHH
Confidence 665322111 112356666666554 4444543321 111111 11122567999999999986443
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.3e-05 Score=87.48 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=113.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccc---------------------cccc
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVK---------------------THFS 140 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 140 (879)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++...... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 479999999999999998653 34557899999999999999988732110 1121
Q ss_pred eEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcE
Q 002800 141 KRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSR 219 (879)
Q Consensus 141 ~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 219 (879)
. ..+... ......+...+++.+... ..+++=++|+|+++....+.++.+...+......+.
T Consensus 92 ~-~~ld~~-----------------~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAA-----------------SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEeccc-----------------ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 111110 011112222222222111 123445789999998777788889998887766777
Q ss_pred EEEEc-cchhhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 220 ILVTT-CEENVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 220 iiiTt-R~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
+|++| +...+...+ .....+++.+++.++....+.+.+...+.. .. .+.+..|++.++|-.--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 66555 444444332 345789999999999999998776544331 11 234678899999966433
No 122
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.09 E-value=7.6e-06 Score=86.36 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--c--chHHHHHHHHHHhccCCC
Q 002800 92 NRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--Y--PEIRIARAILESLKDGVS 167 (879)
Q Consensus 92 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~--~~~~~~~~i~~~l~~~~~ 167 (879)
-++++++..-. .-...+|+|++|+||||||+++|++.... +|+.++||.+. + .+.++++++...+- ...
T Consensus 157 ~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv-~st 229 (416)
T PRK09376 157 TRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVV-AST 229 (416)
T ss_pred eeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEE-EEC
Confidence 34555554432 23356799999999999999999964433 89999999988 3 56667776653322 111
Q ss_pred CCchhH------HHHHHHHHHH-hhCCeeEEEeecccc
Q 002800 168 SDLVEI------DTVLQQISHY-IQGNRFLLVLDDVRS 198 (879)
Q Consensus 168 ~~~~~~------~~~~~~l~~~-l~~k~~LlVlDdv~~ 198 (879)
.+.... ....+.-+.+ -.+++++|++|++..
T Consensus 230 ~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 230 FDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111111 1112222222 257999999999965
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.06 E-value=3.9e-05 Score=82.55 Aligned_cols=148 Identities=16% Similarity=0.268 Sum_probs=86.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.+++|.++..+.+..++..+. -..++.++|++|+||||+|+.+++. .... ...+..+....+..++.+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~~~~~~i~~~l~~ 90 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSDCRIDFVRNRLTR 90 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCcccHHHHHHHHHH
Confidence 579999999999999987542 3457777999999999999999873 2222 12222221001111111111
Q ss_pred hccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc-chHhHHHHHHhccCCCCCcEEEEEccchhhh-hhc-Cccce
Q 002800 162 LKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR-YFNYWQQLMYSLKSGSEGSRILVTTCEENVI-NKM-GNTRM 238 (879)
Q Consensus 162 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~-~~~-~~~~~ 238 (879)
+. ... .+.+.+-++|+||++.. ..+..+.+...+.....++++|+||...... ..+ .....
T Consensus 91 ~~--------------~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 FA--------------STV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HH--------------Hhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 10 000 01134557899999865 3333444555565556778899988654311 111 12346
Q ss_pred EeCCCCCHHhHHHHHHH
Q 002800 239 ISLGTLSEEASWSLFCL 255 (879)
Q Consensus 239 ~~l~~L~~~e~~~Lf~~ 255 (879)
+.+...+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777778877766553
No 124
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.05 E-value=0.00015 Score=75.92 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=87.0
Q ss_pred ceeeehhhHHHHHHHHhc---CC------CCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 83 QVIVRDGEKNRLLNLLLC---ES------SEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~---~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
.++|.++.+++|.++... .. -.......-+.++|++|+||||+|+.++....-........|+.++. .
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~--~- 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR--D- 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH--H-
Confidence 477877666665443221 00 00011222477999999999999988776211111111123454441 1
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc---------chHhHHHHHHhccCCCCCcEEEEEc
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR---------YFNYWQQLMYSLKSGSEGSRILVTT 224 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiiTt 224 (879)
+++..+. +.. .......+.+. ..-+|++|++... ..+.++.+...+.....+.+||+++
T Consensus 100 ---~l~~~~~-g~~-----~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~ 167 (284)
T TIGR02880 100 ---DLVGQYI-GHT-----APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG 167 (284)
T ss_pred ---HHhHhhc-ccc-----hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1222222 111 11122222221 3368999999732 2334556667676666667777776
Q ss_pred cchhhhhhc--C------ccceEeCCCCCHHhHHHHHHHHhcc
Q 002800 225 CEENVINKM--G------NTRMISLGTLSEEASWSLFCLVAFY 259 (879)
Q Consensus 225 R~~~v~~~~--~------~~~~~~l~~L~~~e~~~Lf~~~a~~ 259 (879)
......... . ....+++.+++.+|-.+++...+-.
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 543222111 1 1357899999999999998877643
No 125
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00017 Score=76.36 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=116.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccc-------------ccccceEEEEEee
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV-------------KTHFSKRIWVSAS 148 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~s 148 (879)
.+++|.++.++.+.+.+..+. -.....++|+.|+||+++|..+++..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 478999999999999998763 3467889999999999999988763111 1122334455321
Q ss_pred --cchHHHHHHHHHHhcc-C---CCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEE
Q 002800 149 --YPEIRIARAILESLKD-G---VSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRIL 221 (879)
Q Consensus 149 --~~~~~~~~~i~~~l~~-~---~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 221 (879)
.+-..+...-++..+. . .....+...++.+.+... ..+++=++|+|+++..+......+...+.... .+.+|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000000111111110 0 011112222322222211 12556689999999887778888888887665 44565
Q ss_pred EEccc-hhhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 222 VTTCE-ENVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 222 iTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
++|.+ ..+.... .....+++.+++.++..+.+.+....... . .....++..++|-|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----N----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----h----hHHHHHHHHcCCCHHHHHHH
Confidence 55544 3333322 34678999999999999999876432111 0 01357889999999766543
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.03 E-value=8.9e-05 Score=77.04 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=83.6
Q ss_pred ceeeehhhHHHHHHHHhc---------CCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 83 QVIVRDGEKNRLLNLLLC---------ESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
.++|.+..+++|.+.... ..-...+...-+.++|++|+||||+|+.+++...-...-....++.++. .+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--~~ 84 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--AD 84 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH--HH
Confidence 588988777666543211 0000122445677999999999999999987211001011112333331 11
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccc--------hHhHHHHHHhccCCCCCcEEEEEcc
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRY--------FNYWQQLMYSLKSGSEGSRILVTTC 225 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTtR 225 (879)
+. .... +. ......+.+.+. ..-+|++|+++... .+..+.+...+........+|+++.
T Consensus 85 l~----~~~~-g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 85 LV----GEYI-GH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred hh----hhhc-cc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 11 1111 00 011122222221 23488999997521 2344455555554444445566654
Q ss_pred chhhhh------hc-Cc-cceEeCCCCCHHhHHHHHHHHhcc
Q 002800 226 EENVIN------KM-GN-TRMISLGTLSEEASWSLFCLVAFY 259 (879)
Q Consensus 226 ~~~v~~------~~-~~-~~~~~l~~L~~~e~~~Lf~~~a~~ 259 (879)
..+... .+ .. ...+++++++.+|-.+++.+.+..
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 432211 11 11 346889999999999999877654
No 127
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00011 Score=83.75 Aligned_cols=191 Identities=10% Similarity=0.074 Sum_probs=115.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc---cceEEEEEeecchHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH---FSKRIWVSASYPEIRIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~~wv~~s~~~~~~~~~i 158 (879)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++..-.... +.|. .| ...+.|
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~--~C------~~C~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG--EC------SSCKSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc--cc------hHHHHH
Confidence 479999999999999998653 3456789999999999999999873211110 1110 00 000111
Q ss_pred HHH-------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhh
Q 002800 159 LES-------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENV 229 (879)
Q Consensus 159 ~~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v 229 (879)
... +.........+..++.+.+... ..+++=++|+|+++......++.+...+......+.+|++|.+ ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 110 0000011122222222222211 2355568999999887777888888888876667777766644 333
Q ss_pred hhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHH
Q 002800 230 INKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKV 290 (879)
Q Consensus 230 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~ 290 (879)
...+ .....+++.+++.++..+.+.+.+...+.. .. .+.+..|++.++|-+-.+..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 2222 234678999999999998888776544321 11 34467788999997754433
No 128
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=5.1e-06 Score=64.49 Aligned_cols=58 Identities=36% Similarity=0.540 Sum_probs=46.9
Q ss_pred CcccEEEcCCCCCcccccccccC-cccccCCCCCEEecccCCCCcccCc-ccccCCCCcEEeccCcc
Q 002800 493 TCLRSLDLSNQDNGFYNVIKRVP-RGIRKLLHLRYLNLSRNSKIAELPE-SLCDLYNLETMELSWCI 557 (879)
Q Consensus 493 ~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~L~~~~ 557 (879)
++|++|++++ +.+..+| ..+.++++|++|++++|. +..+|. .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~------n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN------NKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS------STESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC------CCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 4688888888 6788887 467888999999999888 777764 67889999999998873
No 129
>PRK06620 hypothetical protein; Validated
Probab=98.01 E-value=6e-05 Score=75.18 Aligned_cols=133 Identities=11% Similarity=0.095 Sum_probs=77.6
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
+.+.|+|++|+|||+|++.+++.. .. .++...+. . + +..+ ..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~~~~~------------~----------~-------~~~~-~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIKDIFF------------N----------E-------EILE-KYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcchhhh------------c----------h-------hHHh-cCC
Confidence 568899999999999999987732 11 12110000 0 0 0111 235
Q ss_pred EEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh-------hhhhcCccceEeCCCCCHHhHHHHHHHHhccCCC
Q 002800 190 LLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN-------VINKMGNTRMISLGTLSEEASWSLFCLVAFYWRR 262 (879)
Q Consensus 190 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~ 262 (879)
++++||++.........+...+. ..|..||+|++... ...++....+++++++++++-.+++.+.+...+.
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 78889997431112222222222 34568999988642 2233444568999999999988888877653221
Q ss_pred CchhhHHHHHHHHHHHhhcCCChh
Q 002800 263 SDEEFQELEHIGRQVIRKCKNLPL 286 (879)
Q Consensus 263 ~~~~~~~l~~~~~~i~~~~~glPL 286 (879)
..+ +++..-|++.+.|---
T Consensus 166 --~l~---~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 166 --TIS---RQIIDFLLVNLPREYS 184 (214)
T ss_pred --CCC---HHHHHHHHHHccCCHH
Confidence 112 3446667777665443
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=98.00 E-value=0.00028 Score=73.84 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=87.0
Q ss_pred ceeeehhhHHHHHHHHh---cC------CCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 83 QVIVRDGEKNRLLNLLL---CE------SSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~---~~------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
+++|.++.+++|.++.. -. .-........+.++|++|+||||+|+.+++.....+.-...-|+.++. .+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~--~~ 101 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR--DD 101 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH--HH
Confidence 57887776665544421 11 000111223477899999999999999987311111111122444441 11
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc---------chHhHHHHHHhccCCCCCcEEEEEc
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR---------YFNYWQQLMYSLKSGSEGSRILVTT 224 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiiTt 224 (879)
+..... +.. .......+.+. ..-+|++|++... ..+..+.+...+.......+||+++
T Consensus 102 ----l~~~~~-g~~-----~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag 168 (287)
T CHL00181 102 ----LVGQYI-GHT-----APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAG 168 (287)
T ss_pred ----HHHHHh-ccc-----hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 222222 111 11112222221 2349999999652 2234444556565555666777777
Q ss_pred cchhhhhhc--------CccceEeCCCCCHHhHHHHHHHHhcc
Q 002800 225 CEENVINKM--------GNTRMISLGTLSEEASWSLFCLVAFY 259 (879)
Q Consensus 225 R~~~v~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~ 259 (879)
....+.... .....+.+.+++.+|..+++...+..
T Consensus 169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 643332111 12457999999999999998887654
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.00 E-value=6.8e-05 Score=89.53 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=86.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-----cc-ceEEEEEeecchHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-----HF-SKRIWVSASYPEIRIA 155 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~f-~~~~wv~~s~~~~~~~ 155 (879)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++ ++.. .+ ...+|.. +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~~---~~~~-- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYSL---DMGS-- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEEe---cHHH--
Confidence 369999999999999997653 22356999999999999999998 3311 11 2333321 1111
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeecccccc---------hHhHHHHHHhccCCCCCcEEEEEcc
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSRY---------FNYWQQLMYSLKSGSEGSRILVTTC 225 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iiiTtR 225 (879)
++.. .. ...+.++....+.+.+ ..++.+|++|+++.-. .+.-+.+...+.. + .-++|-+|.
T Consensus 249 --l~a~----~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt 319 (731)
T TIGR02639 249 --LLAG----TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTT 319 (731)
T ss_pred --Hhhh----cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecC
Confidence 1110 00 1112222223333333 3467899999997421 1122334444332 1 234454444
Q ss_pred chhhh------hh-cCccceEeCCCCCHHhHHHHHHHHh
Q 002800 226 EENVI------NK-MGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 226 ~~~v~------~~-~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
..+.. .. ......+++++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 32211 11 1234579999999999999998654
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.99 E-value=6.9e-05 Score=90.07 Aligned_cols=153 Identities=17% Similarity=0.173 Sum_probs=86.4
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc------cceEEE-EEeecchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH------FSKRIW-VSASYPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~s~~~~~~ 154 (879)
..+|||+.++.++++.|.... ..-+.++|++|+||||+|+.+++ ++... ....+| +..+ .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~----~- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLG----L- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehh----h-
Confidence 468999999999999998753 22345999999999999999998 33221 112232 2111 0
Q ss_pred HHHHHHHhccCCCCCchhH-HHHHHHHHHHh-hCCeeEEEeecccccc-------hHhHH-HHHHhccCCCCCcEEEEEc
Q 002800 155 ARAILESLKDGVSSDLVEI-DTVLQQISHYI-QGNRFLLVLDDVRSRY-------FNYWQ-QLMYSLKSGSEGSRILVTT 224 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~iiiTt 224 (879)
+..+.. ...+. +.+...+.+.- .+++.+|++|+++... ..+-. .+...+.. ..-++|-||
T Consensus 254 -------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 254 -------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred -------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 000111 11112 12222222221 2568999999997631 11111 23333322 234566666
Q ss_pred cchhhhhh-------cCccceEeCCCCCHHhHHHHHHHHh
Q 002800 225 CEENVINK-------MGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 225 R~~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
...+.... ......+.+++++.+++.+++....
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 54322111 1234689999999999999975443
No 133
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00024 Score=81.48 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=111.4
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++..-....-+. ...+.-...+.+...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-----~pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-----EPCNECEICKAITNG 85 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-----CCCCccHHHHHHhcC
Confidence 579999999999999998653 3455678999999999999999863111000000 000000111111110
Q ss_pred -------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhh
Q 002800 162 -------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINK 232 (879)
Q Consensus 162 -------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~ 232 (879)
+.........+..++.+.+... ..++.-++|+|+++......+..+...+........+|++|.. ..+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 0000011112222333332211 1345668899999887667888888888766556565655533 333322
Q ss_pred c-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 233 M-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 233 ~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
. .....++..+++.++..+.+...+-..+.. .. .+.+..|++.++|-+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 2 234678899999999998888776543321 11 234667888888876543
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.00015 Score=80.55 Aligned_cols=136 Identities=19% Similarity=0.261 Sum_probs=80.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
..-+.|+|+.|+|||+||+.+++. +......++++.. ..+...+...+. .. . .+.+++.++ +.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~----~~f~~~~~~~l~-~~-----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS----ELFTEHLVSAIR-SG-----E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH----HHHHHHHHHHHh-cc-----h----HHHHHHHcc-cC
Confidence 355789999999999999999983 3332233455543 344445555554 11 1 122333333 34
Q ss_pred eEEEeecccccchHh--HHHHHHhccC-CCCCcEEEEEccch---------hhhhhcCccceEeCCCCCHHhHHHHHHHH
Q 002800 189 FLLVLDDVRSRYFNY--WQQLMYSLKS-GSEGSRILVTTCEE---------NVINKMGNTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 189 ~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
-+|++||+....... .+.+...+.. ...|..||+||... .+..++.....+++.+++.++..+++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 588889996632111 1223332221 12355788888542 22233344578999999999999999988
Q ss_pred hccCC
Q 002800 257 AFYWR 261 (879)
Q Consensus 257 a~~~~ 261 (879)
+...+
T Consensus 284 ~~~~~ 288 (445)
T PRK12422 284 AEALS 288 (445)
T ss_pred HHHcC
Confidence 76543
No 135
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=7.3e-07 Score=90.37 Aligned_cols=224 Identities=23% Similarity=0.214 Sum_probs=118.2
Q ss_pred hhhhccCCcccEEEcCCCCCccccccc-----ccCcccccCCCCCEEecccCC---CCcccCcc-------cccCCCCcE
Q 002800 486 SALFDNLTCLRSLDLSNQDNGFYNVIK-----RVPRGIRKLLHLRYLNLSRNS---KIAELPES-------LCDLYNLET 550 (879)
Q Consensus 486 ~~~~~~l~~Lr~L~L~~~~~~~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~---~i~~lP~~-------i~~L~~L~~ 550 (879)
......+..+..++|++ +.+. .+-..+.+.++|+..+++.-. ...++|+. +-+.++|++
T Consensus 23 ~~~~~~~~s~~~l~lsg------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSG------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred HHHhcccCceEEEeccC------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 34467788899999999 4443 234556677788888888643 12245543 335567888
Q ss_pred EeccCcccccccc----hhhhcccccceEecCCcccccCCcc-CCCCCCCCcCCceeecccCCCCcccCcccccccccCC
Q 002800 551 MELSWCISLKRLP----QRMGQLINLWHLVNDGTSLSYMPKG-IERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLR 625 (879)
Q Consensus 551 L~L~~~~~l~~lp----~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~ 625 (879)
||||.|-.-..-+ .-+.++..|+||++.+|.+...-.+ +++ .|+.|. .... .++=..|+
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk------------~~~~~~Lr 160 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK------------AASKPKLR 160 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc------------cCCCcceE
Confidence 8888773222222 2345677788888877765422110 110 111111 0000 00001111
Q ss_pred CeeEEcccCCCCh----hcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccC--
Q 002800 626 GSLKIKKLGNVSK----DEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLS-- 699 (879)
Q Consensus 626 ~~L~i~~l~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~-- 699 (879)
+....++.. ..+....+...+.|+.+.++.|.+.+. ......+.+..+++|+.|++..|..+.-.
T Consensus 161 ----v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-----G~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 161 ----VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-----GVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ----EEEeeccccccccHHHHHHHHHhccccceEEEecccccCc-----hhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 111111111 122233455567777777777765321 12344556677778888888877654321
Q ss_pred --cchhhcccCCcEEeEcCCCCCCCCC------C-CCCCCccceeeccccc
Q 002800 700 --SIFIMSLAKLRSMSLDRCINLEQLP------R-LGELPSLESLTVRNMR 741 (879)
Q Consensus 700 --p~~~~~l~~L~~L~L~~~~~~~~lp------~-l~~l~~L~~L~L~~~~ 741 (879)
...+..+++|+.|++++|. ++.=- . -...|+|++|.+.+|.
T Consensus 232 ~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 1223466778888888884 22211 1 2346778888877744
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.96 E-value=0.00018 Score=80.09 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=92.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccc--eEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFS--KRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
...+.|+|+.|+|||+||+.+++ .+..... .++++.. .++..++...+. .. ..+ .+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~----~~~~~~~~~~~~-~~-----~~~----~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS----EKFTNDFVNALR-NN-----KME----EFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH----HHHHHHHHHHHH-cC-----CHH----HHHHHHHh
Confidence 34678999999999999999998 3433332 2445543 344455555554 11 122 22333332
Q ss_pred CeeEEEeecccccchH-hH-HHHHHhccC-CCCCcEEEEEccch-h--------hhhhcCccceEeCCCCCHHhHHHHHH
Q 002800 187 NRFLLVLDDVRSRYFN-YW-QQLMYSLKS-GSEGSRILVTTCEE-N--------VINKMGNTRMISLGTLSEEASWSLFC 254 (879)
Q Consensus 187 k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iiiTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 254 (879)
.-+|||||++..... .+ +.+...+.. ...+..||+|+... . +..++....++++++.+.++-.+++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 348899999753211 11 223333322 12345677777642 2 22223334579999999999999999
Q ss_pred HHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 255 LVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 255 ~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
+.+...... .+ +++...|++.+.|..-.+
T Consensus 279 ~~~~~~~~~--l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 279 KKAEEEGLE--LP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHcCCC--CC---HHHHHHHHHhcCCCHHHH
Confidence 887654332 12 345677778777765543
No 137
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00051 Score=67.55 Aligned_cols=181 Identities=13% Similarity=0.208 Sum_probs=107.9
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCC-Cc-hhHHHHHHHHHHHh
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSS-DL-VEIDTVLQQISHYI 184 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~-~~-~~~~~~~~~l~~~l 184 (879)
+..++.++|.-|.|||.+++.... ...+.=-+++.+... .....+...++..+. ..+. .. .-.++....+....
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~--s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~-~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLA--SLNEDQVAVVVIDKPTLSDATLLEAIVADLE-SQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHH--hcCCCceEEEEecCcchhHHHHHHHHHHHhc-cCccchhHHHHHHHHHHHHHHH
Confidence 556899999999999999995443 111111112223322 677788888888887 3211 11 11223333333333
Q ss_pred -hCCe-eEEEeecccccchHhHHHHHHhccCCCCC---cEEEEEccchhhhh--------hc-Cccce-EeCCCCCHHhH
Q 002800 185 -QGNR-FLLVLDDVRSRYFNYWQQLMYSLKSGSEG---SRILVTTCEENVIN--------KM-GNTRM-ISLGTLSEEAS 249 (879)
Q Consensus 185 -~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~iiiTtR~~~v~~--------~~-~~~~~-~~l~~L~~~e~ 249 (879)
+++| ..+++|++.....+..+.+.-...-...+ -+|+..-. +++.. .. ..... |++.|++.++.
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 4666 89999999887666777665544322112 22333222 11111 11 12233 99999999999
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhh
Q 002800 250 WSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSH 294 (879)
Q Consensus 250 ~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~ 294 (879)
..++..+..+...+.+... .+....|..+..|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~~~l~~--~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLFS--DDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCcccCC--hhHHHHHHHHhccchHHHHHHHHH
Confidence 9998887665544322222 344678899999999999877543
No 138
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=0.00028 Score=78.64 Aligned_cols=158 Identities=15% Similarity=0.145 Sum_probs=93.4
Q ss_pred cEEEEEcCCcchHHHHHHHHhccccccccc-c-eEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHF-S-KRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN 187 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 187 (879)
.-+.|+|.+|+|||+||+.+++ .+.... . .++|++. .++..++...+. .. ..+ .+++....+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~----~~f~~~~~~~~~-~~-----~~~----~f~~~~~~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS----EKFLNDLVDSMK-EG-----KLN----EFREKYRKK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH----HHHHHHHHHHHh-cc-----cHH----HHHHHHHhc
Confidence 3488999999999999999998 444333 2 3555553 455566666554 11 111 233333345
Q ss_pred eeEEEeeccccc-chHhH-HHHHHhccC-CCCCcEEEEEcc-chh--------hhhhcCccceEeCCCCCHHhHHHHHHH
Q 002800 188 RFLLVLDDVRSR-YFNYW-QQLMYSLKS-GSEGSRILVTTC-EEN--------VINKMGNTRMISLGTLSEEASWSLFCL 255 (879)
Q Consensus 188 ~~LlVlDdv~~~-~~~~~-~~l~~~l~~-~~~gs~iiiTtR-~~~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 255 (879)
.-+|++||++.. +...+ +.+...+.. ...|..||+||. .+. +..++....++++++.+.++-.+++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 568999999752 11111 223222221 123447888875 322 222233456889999999999999998
Q ss_pred HhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 256 VAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 256 ~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
.+...... .+ +++...|++.+.|.--.+
T Consensus 275 ~~~~~~~~--l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEIEHGE--LP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHhcCCC--CC---HHHHHHHHhccccCHHHH
Confidence 87643321 12 345777888877754433
No 139
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.94 E-value=5.6e-05 Score=83.03 Aligned_cols=160 Identities=11% Similarity=0.120 Sum_probs=91.6
Q ss_pred CceeeehhhHHHHHHHHhcCCC-------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS-------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 154 (879)
.++.|.++.+++|.+.+...-. -+-...+-+.++|++|+|||++|+.+++ .....| +.+.. .+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~--se- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVG--SE- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEec--ch-
Confidence 3577889888888887742210 0112345678999999999999999998 444443 22220 01
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccc-----------hH---hHHHHHHhccC--CCCCc
Q 002800 155 ARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRY-----------FN---YWQQLMYSLKS--GSEGS 218 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~gs 218 (879)
+..... +. ....+...+.......+.+|+||+++... .+ ....+...+.. ...+.
T Consensus 253 ---L~~k~~-Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 ---LIQKYL-GD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred ---hhhhhc-ch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 111111 10 11112222222334678899999986420 01 11222222222 23466
Q ss_pred EEEEEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhccC
Q 002800 219 RILVTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFYW 260 (879)
Q Consensus 219 ~iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 260 (879)
+||+||...+..... ..+..+++.+.+.++..++|..+..+.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 788888765443321 125678999999999999999876543
No 140
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.94 E-value=1.9e-05 Score=83.89 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=59.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHHHHHHHhccCCCCCchh-----HHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIARAILESLKDGVSSDLVE-----IDTVLQQ 179 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~~ 179 (879)
-..++|+|++|+|||||++.+++.... .+|+..+||.+. .++.++++.+...+-......... .....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 346789999999999999999995322 369999999988 578888888855443111111111 1122222
Q ss_pred HHHH-hhCCeeEEEeecccc
Q 002800 180 ISHY-IQGNRFLLVLDDVRS 198 (879)
Q Consensus 180 l~~~-l~~k~~LlVlDdv~~ 198 (879)
.... -.+++.+|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 258999999999965
No 141
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.94 E-value=6.5e-05 Score=69.07 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=54.1
Q ss_pred EEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC-eeE
Q 002800 112 ISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN-RFL 190 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k-~~L 190 (879)
|.|+|++|+||||+|+.+++. ...+ .+.+..+ .. . ........+.+...+.+.-... +.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~-~~-----------~--~~~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGS-EL-----------I--SSYAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETT-HH-----------H--TSSTTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---ccccccc-cc-----------c--ccccccccccccccccccccccccee
Confidence 569999999999999999984 3222 2333322 00 0 0011222333333333332333 899
Q ss_pred EEeecccccchHh-----------HHHHHHhccCCC---CCcEEEEEccc
Q 002800 191 LVLDDVRSRYFNY-----------WQQLMYSLKSGS---EGSRILVTTCE 226 (879)
Q Consensus 191 lVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iiiTtR~ 226 (879)
|++||++...... ...+...+.... .+..||.||..
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 9999998753333 445555555433 34566777766
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00017 Score=83.05 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=113.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++..--......- ....-...+.|...
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~-----~c~~c~~c~~i~~g 85 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE-----PCNVCPPCVEITEG 85 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC-----CCCccHHHHHHhcC
Confidence 479999999999999987653 23456799999999999999998731111110000 00000011111000
Q ss_pred -------hccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEcc-chhhhhh
Q 002800 162 -------LKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTC-EENVINK 232 (879)
Q Consensus 162 -------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~ 232 (879)
+.........+..++.+.+... ..+++=++|+|+++.........+...+......+.+|++|. ...+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000111222333333333211 123445789999988777778888888887666777665554 3444433
Q ss_pred c-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh-hHHHHH
Q 002800 233 M-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP-LAVKVI 291 (879)
Q Consensus 233 ~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP-Lai~~~ 291 (879)
. .....+++.+++.++....+...+...+.. .. .+....|++.++|-. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--IS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 235678999999999888887765433321 11 334677888998865 455444
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=3.6e-05 Score=83.31 Aligned_cols=118 Identities=11% Similarity=0.185 Sum_probs=73.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~ 159 (879)
.++++.++..+.+...|.... .+.++|++|+|||++|+.+++.......|+.+.||.++ .+..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--------~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~--- 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--------NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ--- 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc---
Confidence 468889999999999998543 47789999999999999999854334467778888877 44444332
Q ss_pred HHhccCCCCCch-hHHHHHHHHHHHh--hCCeeEEEeecccccchHh-HHHHHHhcc
Q 002800 160 ESLKDGVSSDLV-EIDTVLQQISHYI--QGNRFLLVLDDVRSRYFNY-WQQLMYSLK 212 (879)
Q Consensus 160 ~~l~~~~~~~~~-~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 212 (879)
... ....+.. ......+.+.+.. .++++++|+|++...+.+. +.++...+.
T Consensus 244 -G~r-P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 244 -GYR-PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred -ccC-CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 111 1111110 0011122222222 2468999999998876544 555555444
No 144
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.91 E-value=0.0002 Score=80.71 Aligned_cols=158 Identities=11% Similarity=0.123 Sum_probs=94.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccc--eEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFS--KRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
..-+.|+|++|+|||+||+.+++ .+...+. .++++.. .++..++...+. .. .. ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~----~~~~~~~~~~~~-~~-----~~----~~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS----EKFTNDFVNALR-NN-----TM----EEFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH----HHHHHHHHHHHH-cC-----cH----HHHHHHHh-
Confidence 35578999999999999999998 4444432 2445543 334444555544 11 11 22333333
Q ss_pred CeeEEEeecccccch-H-hHHHHHHhccC-CCCCcEEEEEccchh---------hhhhcCccceEeCCCCCHHhHHHHHH
Q 002800 187 NRFLLVLDDVRSRYF-N-YWQQLMYSLKS-GSEGSRILVTTCEEN---------VINKMGNTRMISLGTLSEEASWSLFC 254 (879)
Q Consensus 187 k~~LlVlDdv~~~~~-~-~~~~l~~~l~~-~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 254 (879)
+.-+||+||++.... + ..+.+...+.. ...|..||+||.... +..++....++++++.+.++-.+++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 344899999975311 1 11233332221 123446888776531 22334445689999999999999999
Q ss_pred HHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 255 LVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 255 ~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
+.+...+. ..+ +++...|++.+.|-.-.+
T Consensus 291 ~~~~~~~~--~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 291 KKAEEEGI--DLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHcCC--CCC---HHHHHHHHcCcCCCHHHH
Confidence 98865322 112 345778888888876544
No 145
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.91 E-value=1e-06 Score=89.33 Aligned_cols=243 Identities=18% Similarity=0.152 Sum_probs=145.8
Q ss_pred ccccCCCCccEEEeccCCCcc-cccchhhhhccCCcccEEEcCCCCCcccc-cccccCc-------ccccCCCCCEEecc
Q 002800 460 TSVYNRKRLRSLVVERGEGFM-TGINLSALFDNLTCLRSLDLSNQDNGFYN-VIKRVPR-------GIRKLLHLRYLNLS 530 (879)
Q Consensus 460 ~~~~~~~~LrsL~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~-~l~~lp~-------~i~~L~~Lr~L~L~ 530 (879)
.....+..+..+.+++|.... -...+...+.+.+.||.-++++ .|.. ...++|+ .+-..++|++|+||
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd---~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD---MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh---hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 345567889999999984221 1233555678888999999987 1111 1123343 34456799999999
Q ss_pred cCCCCc-c----cCcccccCCCCcEEeccCcccccccch--------------hhhcccccceEecCCcccccCCc----
Q 002800 531 RNSKIA-E----LPESLCDLYNLETMELSWCISLKRLPQ--------------RMGQLINLWHLVNDGTSLSYMPK---- 587 (879)
Q Consensus 531 ~~~~i~-~----lP~~i~~L~~L~~L~L~~~~~l~~lp~--------------~i~~L~~L~~L~l~~~~l~~lp~---- 587 (879)
.|- +. . +-.-+..+++|++|.|.+| .++..-. .+++-++||.+...+|.+..-+.
T Consensus 101 DNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 101 DNA-FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccc-cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 997 43 2 2234667899999999999 4543221 12233566666666665433221
Q ss_pred -cCCCCCCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCC
Q 002800 588 -GIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKG 666 (879)
Q Consensus 588 -~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 666 (879)
.+...+.|..+.+..+++... ...+....+..|++|+.|+|..|.++...
T Consensus 179 ~~~~~~~~leevr~~qN~I~~e-----------------------------G~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPE-----------------------------GVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred HHHHhccccceEEEecccccCc-----------------------------hhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 122333344433333322110 01234556778899999999988764321
Q ss_pred CCCCchHhhhcCCCCCCCccEEEEeeecCCccCcch-----hhcccCCcEEeEcCCCCCCC----C-CCCCCCCccceee
Q 002800 667 STNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIF-----IMSLAKLRSMSLDRCINLEQ----L-PRLGELPSLESLT 736 (879)
Q Consensus 667 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~-----~~~l~~L~~L~L~~~~~~~~----l-p~l~~l~~L~~L~ 736 (879)
....-..++..++|+.|++.+|....-.... -...|+|+.|.+.+|..... + -.....|.|+.|.
T Consensus 230 -----s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 230 -----SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred -----HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 2223345566678999999888654321111 12678999999998853221 1 1245578899999
Q ss_pred ccccc
Q 002800 737 VRNMR 741 (879)
Q Consensus 737 L~~~~ 741 (879)
|++|.
T Consensus 305 LngN~ 309 (382)
T KOG1909|consen 305 LNGNR 309 (382)
T ss_pred CCccc
Confidence 98854
No 146
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.89 E-value=0.0019 Score=67.08 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=102.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAI 158 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i 158 (879)
.+.+.+|+.++..+..++...+. .-...|.|.|-.|.|||.+.+++.+.. .. ..+|+++- ++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHH
Confidence 46789999999999999987642 244566899999999999999999843 22 25799877 9999999999
Q ss_pred HHHhc-cCCCCCchhH--HH---HHHHHHHH--hh--CCeeEEEeecccccchHhHHH-HHHhc---cC-CCCCcEEEEE
Q 002800 159 LESLK-DGVSSDLVEI--DT---VLQQISHY--IQ--GNRFLLVLDDVRSRYFNYWQQ-LMYSL---KS-GSEGSRILVT 223 (879)
Q Consensus 159 ~~~l~-~~~~~~~~~~--~~---~~~~l~~~--l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l---~~-~~~gs~iiiT 223 (879)
+.+.. .......... +. .+..+.++ .. ++.++|||||++.- .+.+. +.+.+ .. -....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99984 1222222222 22 23333331 22 45899999999763 12222 11111 11 1112333444
Q ss_pred ccchhhhhh---cCc--cceEeCCCCCHHhHHHHHHHH
Q 002800 224 TCEENVINK---MGN--TRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 224 tR~~~v~~~---~~~--~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
+-..-.... ++. ..++.....+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 433211111 233 345678889999998888653
No 147
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.89 E-value=5.7e-07 Score=93.12 Aligned_cols=305 Identities=18% Similarity=0.166 Sum_probs=159.6
Q ss_pred CCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCccccccccc-Cccc-ccCCCCCEEecccCCCCcccC--cc
Q 002800 466 KRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRV-PRGI-RKLLHLRYLNLSRNSKIAELP--ES 541 (879)
Q Consensus 466 ~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i-~~L~~Lr~L~L~~~~~i~~lP--~~ 541 (879)
..||.|.+.++.... ...+..+-..++++..|++.+ |..+++- -.++ ..+..|++|+|..|..++..- .-
T Consensus 138 g~lk~LSlrG~r~v~-~sslrt~~~~CpnIehL~l~g-----c~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG-DSSLRTFASNCPNIEHLALYG-----CKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCC-cchhhHHhhhCCchhhhhhhc-----ceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 457777777764221 223455566778888888888 5544432 1122 456777888887766555321 11
Q ss_pred cccCCCCcEEeccCcccccc--cchhhhcccccceEecCCcccccCCccCCCCCCCCcCCceeecccCCCCcccCccccc
Q 002800 542 LCDLYNLETMELSWCISLKR--LPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVSVGSDDDKACKLECLK 619 (879)
Q Consensus 542 i~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~ 619 (879)
...+++|.+|++++|..+.. +..-..++.+|+.+.+.+|. ..+ ++.|-..... .. ++.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~--------le~l~~~~~~-------~~---~i~ 271 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELE--------LEALLKAAAY-------CL---EIL 271 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc--ccc--------HHHHHHHhcc-------Ch---Hhh
Confidence 23466777777777754433 11112233333333333331 000 0000000000 00 000
Q ss_pred ccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCC-CCCCCccEEEEeeecCCc-
Q 002800 620 SLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGL-QVPPNLERLEIFYHRGNT- 697 (879)
Q Consensus 620 ~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~- 697 (879)
.++ ......+++ +.....-..+..|+.|..+.+... ...++..+ +..++|+.|.+.++....
T Consensus 272 ~ln-------l~~c~~lTD-~~~~~i~~~c~~lq~l~~s~~t~~--------~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 272 KLN-------LQHCNQLTD-EDLWLIACGCHALQVLCYSSCTDI--------TDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred ccc-------hhhhccccc-hHHHHHhhhhhHhhhhcccCCCCC--------chHHHHHHhcCCCceEEEeccccchhhh
Confidence 000 001111111 111112234567778877766531 22333333 345789999998876311
Q ss_pred cCcchh-hcccCCcEEeEcCCCCCCC--CCC-CCCCCccceeeccccccceEecccccCCchhhhccccccccccccCCC
Q 002800 698 LSSIFI-MSLAKLRSMSLDRCINLEQ--LPR-LGELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLGTDRSR 773 (879)
Q Consensus 698 ~~p~~~-~~l~~L~~L~L~~~~~~~~--lp~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 773 (879)
..-..+ .+.+.|+.+++..|....+ +-. -.++|.|+.|.|+.|..++..+-.....
T Consensus 336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~-------------------- 395 (483)
T KOG4341|consen 336 RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS-------------------- 395 (483)
T ss_pred hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh--------------------
Confidence 100112 2678899999988864432 333 3368999999999987665442111110
Q ss_pred CCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCccCeeeccCCCCCcCCCC----CCCCCccEE
Q 002800 774 SSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLETLPD----DYLPQLLDL 849 (879)
Q Consensus 774 ~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~L~~lp~----~~l~~L~~L 849 (879)
...+...|+.|+|+++|.+++-.- +....+++|+.+++.+|...+.=+. .++|+++..
T Consensus 396 -----------~~c~~~~l~~lEL~n~p~i~d~~L-------e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 396 -----------SSCSLEGLEVLELDNCPLITDATL-------EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred -----------ccccccccceeeecCCCCchHHHH-------HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 122567889999999988776544 3456788999999999987764332 235555444
Q ss_pred E
Q 002800 850 K 850 (879)
Q Consensus 850 ~ 850 (879)
.
T Consensus 458 a 458 (483)
T KOG4341|consen 458 A 458 (483)
T ss_pred h
Confidence 3
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.88 E-value=0.00015 Score=79.14 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=90.2
Q ss_pred CceeeehhhHHHHHHHHhcCCC-------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS-------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 154 (879)
.++.|.+..+++|.+.+...-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+.. ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~--s~- 214 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG--SE- 214 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh--HH-
Confidence 3688988888888876642110 01124566889999999999999999983 33333 22220 11
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc-----------chH---hHHHHHHhccC--CCCCc
Q 002800 155 ARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR-----------YFN---YWQQLMYSLKS--GSEGS 218 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~gs 218 (879)
+..... +. ....+.+.+.......+.+|++|+++.. +.+ .+..+...+.. ...+.
T Consensus 215 ---l~~k~~-ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 ---FVQKYL-GE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred ---HHHHhc-ch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 111111 11 1112222333333467899999998642 111 12223333322 23456
Q ss_pred EEEEEccchhhhhh-c----CccceEeCCCCCHHhHHHHHHHHhcc
Q 002800 219 RILVTTCEENVINK-M----GNTRMISLGTLSEEASWSLFCLVAFY 259 (879)
Q Consensus 219 ~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~~ 259 (879)
.||+||...+.... + .-+..+++...+.++..++|..+..+
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 78888876543322 1 12467899999999988888866543
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00047 Score=77.98 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=91.1
Q ss_pred cEEEEEcCCcchHHHHHHHHhccccccccc--ceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHF--SKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN 187 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 187 (879)
..+.|+|..|+|||+|++.+++ .....+ ..++++.. .++..++...+. .. . .+.+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita----eef~~el~~al~-~~-----~----~~~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS----EEFTNEFINSIR-DG-----K----GDSFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH----HHHHHHHHHHHH-hc-----c----HHHHHHHhhc-
Confidence 3478999999999999999998 333322 12445543 444455555544 11 1 1223333333
Q ss_pred eeEEEeecccccc-hHhHHH-HHHhccC-CCCCcEEEEEccch---------hhhhhcCccceEeCCCCCHHhHHHHHHH
Q 002800 188 RFLLVLDDVRSRY-FNYWQQ-LMYSLKS-GSEGSRILVTTCEE---------NVINKMGNTRMISLGTLSEEASWSLFCL 255 (879)
Q Consensus 188 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 255 (879)
-=+|||||+.... .+.|+. +...+.. ...|..|||||+.. .+...+...-+++|++.+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 3478889997632 123322 3222222 12355788888762 2334445577899999999999999999
Q ss_pred HhccCCCCchhhHHHHHHHHHHHhhcCCCh
Q 002800 256 VAFYWRRSDEEFQELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 256 ~a~~~~~~~~~~~~l~~~~~~i~~~~~glP 285 (879)
++...... .. ++++.-|++.+.+..
T Consensus 458 ka~~r~l~--l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 458 KAVQEQLN--AP---PEVLEFIASRISRNI 482 (617)
T ss_pred HHHhcCCC--CC---HHHHHHHHHhccCCH
Confidence 87654432 22 344556666665543
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.86 E-value=0.00013 Score=88.20 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=86.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-----cc-ceEEEEEeecchHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-----HF-SKRIWVSASYPEIRIA 155 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~f-~~~~wv~~s~~~~~~~ 155 (879)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.. +.. .. ...+|. ++ ...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~--i~~~~vp~~l~~~~i~~-l~--~~~-- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR--IVNRDVPDILEDKLVIT-LD--IGL-- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE-ee--HHH--
Confidence 468999999999999998653 223469999999999999999873 321 11 234443 11 111
Q ss_pred HHHHHHhccCCCCCchhHHH-HHHHHHHHhhCCeeEEEeeccccc--------chHhHHHHHHhccCCCCCcEEEEEccc
Q 002800 156 RAILESLKDGVSSDLVEIDT-VLQQISHYIQGNRFLLVLDDVRSR--------YFNYWQQLMYSLKSGSEGSRILVTTCE 226 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iiiTtR~ 226 (879)
-+. +.... .+.++ +...+.+.-..++.+|++|+++.- ..+.-+.+...+.. + .-++|.+|..
T Consensus 246 -----l~a-g~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt~ 316 (821)
T CHL00095 246 -----LLA-GTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATTL 316 (821)
T ss_pred -----Hhc-cCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCCH
Confidence 111 11111 12222 222333222356899999999631 00111223333322 2 3455555554
Q ss_pred hhhhhh-------cCccceEeCCCCCHHhHHHHHHHH
Q 002800 227 ENVINK-------MGNTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 227 ~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
.+.... ......+.+...+.++...++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 432111 123467889999999998888754
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00034 Score=74.45 Aligned_cols=160 Identities=12% Similarity=0.119 Sum_probs=97.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccc-------------------cceEEEEEeecchHHHHHHHHHHhccCCCCC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTH-------------------FSKRIWVSASYPEIRIARAILESLKDGVSSD 169 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~ 169 (879)
...+.++|+.|+||||+|+.++...--... .+...|+.-. ..+....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~--------------~~~~~i~ 87 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE--------------EADKTIK 87 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc--------------CCCCCCC
Confidence 445779999999999999998873211110 0111122100 0001122
Q ss_pred chhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh-hhhh-cCccceEeCCCCCH
Q 002800 170 LVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN-VINK-MGNTRMISLGTLSE 246 (879)
Q Consensus 170 ~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~-~~~~~~~~l~~L~~ 246 (879)
.+++.++.+.+... ..+++=++|+|+++..+.+....+...+.....++.+|+||.+.+ +... ......+.+.+++.
T Consensus 88 id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 88 VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred HHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence 23333333333221 123344557799999888888999999888777888888887753 3222 22356799999999
Q ss_pred HhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 247 EASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 247 ~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
+++.+.+...... .. .+.+..++..++|.|+.+..+
T Consensus 168 ~~~~~~L~~~~~~--~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 168 EESLQWLQQALPE--SD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHHhccc--CC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 9999988765311 11 122456789999999766544
No 152
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.82 E-value=0.00021 Score=79.70 Aligned_cols=166 Identities=15% Similarity=0.188 Sum_probs=91.4
Q ss_pred CceeeehhhHHHHHHHHhcCCC-------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccc-----cceEEEEEeec
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS-------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-----FSKRIWVSASY 149 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~ 149 (879)
.++.|.++.++++.+.+..+-. .+-...+-+.++|++|+|||++|+.+++. .... .....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 5688999999999887643110 01123445789999999999999999983 3332 12234444431
Q ss_pred chHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeecccccc-------hHh-----HHHHHHhccCC--
Q 002800 150 PEIRIARAILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSRY-------FNY-----WQQLMYSLKSG-- 214 (879)
Q Consensus 150 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~-- 214 (879)
+ +++.... + ........+.+..++.. .+++.+|+||+++... ..+ ...+...+...
T Consensus 260 ~------eLl~kyv-G--ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 260 P------ELLNKYV-G--ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred h------hhccccc-c--hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 0 0111111 0 00111122222222221 2578999999997520 011 12343434322
Q ss_pred CCCcEEEEEccchhhhhh-c----CccceEeCCCCCHHhHHHHHHHHhc
Q 002800 215 SEGSRILVTTCEENVINK-M----GNTRMISLGTLSEEASWSLFCLVAF 258 (879)
Q Consensus 215 ~~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~ 258 (879)
..+..||.||-..+.... + .-+..+++...+.++..++|..+..
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 234455666655433221 1 1245699999999999999998753
No 153
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=2.9e-06 Score=94.71 Aligned_cols=102 Identities=25% Similarity=0.329 Sum_probs=57.3
Q ss_pred hccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhc
Q 002800 489 FDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQ 568 (879)
Q Consensus 489 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 568 (879)
+..++.|..|++.+ +.+..+...+..+.+|++|++++|. |..+.. +..+..|+.|++.+| .+..++. +..
T Consensus 91 l~~~~~l~~l~l~~------n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N-~i~~~~~-~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD------NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGN-LISDISG-LES 160 (414)
T ss_pred cccccceeeeeccc------cchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccC-cchhccC-Ccc
Confidence 45566666666666 5565555445666666666666666 655543 555666666666666 4444432 444
Q ss_pred ccccceEecCCcccccCCcc-CCCCCCCCcCCc
Q 002800 569 LINLWHLVNDGTSLSYMPKG-IERLTCLRTLNE 600 (879)
Q Consensus 569 L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~ 600 (879)
+.+|+.+++++|.+..+... ...+.++..+.+
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDL 193 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhc
Confidence 66666666666665544332 244444444443
No 154
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.81 E-value=0.00017 Score=85.05 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=87.5
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc-----cceEEEEEeecchHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-----FSKRIWVSASYPEIRIAR 156 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~ 156 (879)
..++||++++.++++.|.... . .-+.++|++|+|||++|+.++... +... .++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-----~-~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l---~~~---- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-----K-NNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL---DIG---- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-----C-CCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec---cHH----
Confidence 369999999999999998753 2 234589999999999999998731 1111 12333321 111
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeeccccc--------chHhHHHHHHhccCCCCCcEEEEEccch
Q 002800 157 AILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSR--------YFNYWQQLMYSLKSGSEGSRILVTTCEE 227 (879)
Q Consensus 157 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 227 (879)
.++ . +.. ...+.+.....+.+.+ +.++.+|++|+++.. ...+...+..++... ..-+||-+|...
T Consensus 252 ~ll---a-G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 252 SLL---A-GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred HHh---c-ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 111 1 111 1112222222232323 356789999999742 112222233333222 234455555443
Q ss_pred hhhhh-------cCccceEeCCCCCHHhHHHHHHHHh
Q 002800 228 NVINK-------MGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 228 ~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
+.... ......+.+.+.+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32111 1234689999999999999998654
No 155
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.3e-07 Score=89.66 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=101.2
Q ss_pred CCcEEeccCccccc--ccchhhhcccccceEecCCcccc-cCCccCCCCCCCCcCCceeecccCCCCcccCccccccccc
Q 002800 547 NLETMELSWCISLK--RLPQRMGQLINLWHLVNDGTSLS-YMPKGIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNH 623 (879)
Q Consensus 547 ~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~ 623 (879)
.||+|||+.. .++ .+..-+..+.+|+.|.+.++.+. .+-..+.+-.+|+.|++..++.
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG------------------ 246 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG------------------ 246 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc------------------
Confidence 4888888865 332 24444667788888888887655 3434566777777776554332
Q ss_pred CCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccC---c
Q 002800 624 LRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLS---S 700 (879)
Q Consensus 624 L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~---p 700 (879)
++ ..+..-.+..|+.|..|.++||...... ..+ ..-..-++|..|+++||.-+-.. .
T Consensus 247 ------------~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~------Vtv-~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 247 ------------FT-ENALQLLLSSCSRLDELNLSWCFLFTEK------VTV-AVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred ------------cc-hhHHHHHHHhhhhHhhcCchHhhccchh------hhH-HHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 11 1111334677889999999999864211 111 11122368999999998532220 1
Q ss_pred chhhcccCCcEEeEcCCCCCCC--CCCCCCCCccceeecccccc
Q 002800 701 IFIMSLAKLRSMSLDRCINLEQ--LPRLGELPSLESLTVRNMRR 742 (879)
Q Consensus 701 ~~~~~l~~L~~L~L~~~~~~~~--lp~l~~l~~L~~L~L~~~~~ 742 (879)
.....+|+|..|+|++|..++. +..+-+++.|++|.++.|..
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 2234789999999999987664 12367899999999999974
No 156
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.5e-07 Score=89.50 Aligned_cols=163 Identities=20% Similarity=0.255 Sum_probs=106.0
Q ss_pred cccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCc--chhhcccCCcEEeEcCCCC
Q 002800 642 NKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSS--IFIMSLAKLRSMSLDRCIN 719 (879)
Q Consensus 642 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~L~~~~~ 719 (879)
+...++.|++|+.|++.++.+ +..+...+..-.+|+.|+++++.|-.-.. .-+.+++.|.+|+|++|..
T Consensus 202 l~~iLs~C~kLk~lSlEg~~L---------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRL---------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHHHHHhhhhcccccccc---------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 344567788888888887654 22233334455788888888876543211 1245788888888888865
Q ss_pred CCCC-----CCCCCCCccceeeccccccceEecccccCCchhhhccccccccccccCCCCCCcccCCCCCCCcCCCccce
Q 002800 720 LEQL-----PRLGELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKS 794 (879)
Q Consensus 720 ~~~l-----p~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~ 794 (879)
.... ..++ ++|+.|+|++|..-- +..+ ++.+ ...+|+|.+
T Consensus 273 ~~~~Vtv~V~his--e~l~~LNlsG~rrnl-------~~sh------------------~~tL--------~~rcp~l~~ 317 (419)
T KOG2120|consen 273 FTEKVTVAVAHIS--ETLTQLNLSGYRRNL-------QKSH------------------LSTL--------VRRCPNLVH 317 (419)
T ss_pred cchhhhHHHhhhc--hhhhhhhhhhhHhhh-------hhhH------------------HHHH--------HHhCCceee
Confidence 4422 1233 678888888875311 1111 1111 236899999
Q ss_pred eeeccCccccccccccccCCCCCCCCCCccCeeeccCCCCCc---CCCCCCCCCccEEEEeecC
Q 002800 795 LEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLE---TLPDDYLPQLLDLKIFSCP 855 (879)
Q Consensus 795 L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~L~---~lp~~~l~~L~~L~i~~c~ 855 (879)
|+|+++..++.-.+ ..+..|+.|++|.++.|..+. -+.....|+|..|++.||-
T Consensus 318 LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCchHH-------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 99999977765433 355689999999999997654 1222347999999999985
No 157
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.5e-05 Score=55.38 Aligned_cols=33 Identities=48% Similarity=0.645 Sum_probs=16.2
Q ss_pred CCCEEecccCCCCcccCcccccCCCCcEEeccCc
Q 002800 523 HLRYLNLSRNSKIAELPESLCDLYNLETMELSWC 556 (879)
Q Consensus 523 ~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~ 556 (879)
+|++|++++|. +..+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCC
Confidence 45555555555 5555544555555555555555
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.78 E-value=0.00025 Score=86.07 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=85.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc------ceEEEEEeecchHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF------SKRIWVSASYPEIRIA 155 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s~~~~~~~ 155 (879)
..+|||+.+++++++.|.... ..-+.++|++|+|||++|..++. ++...+ ...+|.. +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l---~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLAL---DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEe---eHHHH-
Confidence 359999999999999998753 23345899999999999999987 332211 2233321 11111
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHhh--CCeeEEEeecccccc-----h--HhHHHHHHhccCCCCCcEEEEEccc
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHYIQ--GNRFLLVLDDVRSRY-----F--NYWQQLMYSLKSGSEGSRILVTTCE 226 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-----~--~~~~~l~~~l~~~~~gs~iiiTtR~ 226 (879)
+ . +... ..+.+.....+.+.+. +++.+|++|+++.-. . .+...+..+.... ..-++|.+|..
T Consensus 241 ---~---a-~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 241 ---I---A-GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred ---h---h-cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 1 0 1000 1122222222222232 468999999997531 0 1111222222112 22345555544
Q ss_pred hhhhh-------hcCccceEeCCCCCHHhHHHHHHHHh
Q 002800 227 ENVIN-------KMGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 227 ~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
.+... .......+.+...+.++..+++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 33211 11234578899999999999887654
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00063 Score=73.11 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=85.9
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN 187 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 187 (879)
....+.|||..|.|||.|++++.+ ...........+.++ ......+++..+. . .-.+.+++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~--se~f~~~~v~a~~-~---------~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT--SEDFTNDFVKALR-D---------NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc--HHHHHHHHHHHHH-h---------hhHHHHHHhh--c
Confidence 466788999999999999999999 555555432222222 2334444444444 1 1234455554 3
Q ss_pred eeEEEeecccccc-hHhHHH-HHHhccC-CCCCcEEEEEccch---------hhhhhcCccceEeCCCCCHHhHHHHHHH
Q 002800 188 RFLLVLDDVRSRY-FNYWQQ-LMYSLKS-GSEGSRILVTTCEE---------NVINKMGNTRMISLGTLSEEASWSLFCL 255 (879)
Q Consensus 188 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 255 (879)
-=++++||++--. .+.|+. +...|.. ...|-.||+|++.. .+..++...-.+++.+.+.+....++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 3488899997621 112222 3222322 12333899999663 3444556678999999999999999999
Q ss_pred HhccCCC
Q 002800 256 VAFYWRR 262 (879)
Q Consensus 256 ~a~~~~~ 262 (879)
++...+.
T Consensus 256 ka~~~~~ 262 (408)
T COG0593 256 KAEDRGI 262 (408)
T ss_pred HHHhcCC
Confidence 7765444
No 160
>PRK08116 hypothetical protein; Validated
Probab=97.74 E-value=8.2e-05 Score=76.99 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=58.8
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
.-+.|+|.+|+|||+||..+++. +..+-..+++++ ..+++..+...+. .. ...+... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~----~~~ll~~i~~~~~-~~--~~~~~~~----~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN----FPQLLNRIKSTYK-SS--GKEDENE----IIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE----HHHHHHHHHHHHh-cc--ccccHHH----HHHHhcCCC-
Confidence 34789999999999999999994 333333355554 3445555555443 11 1111222 223334334
Q ss_pred EEEeecccccchHhHHH--HHHhccC-CCCCcEEEEEccc
Q 002800 190 LLVLDDVRSRYFNYWQQ--LMYSLKS-GSEGSRILVTTCE 226 (879)
Q Consensus 190 LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iiiTtR~ 226 (879)
||||||+.......|.. +...+.. ...+..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995443344544 3332222 2345679999964
No 161
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=6.4e-06 Score=91.95 Aligned_cols=106 Identities=29% Similarity=0.450 Sum_probs=84.5
Q ss_pred ccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhcc
Q 002800 490 DNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQL 569 (879)
Q Consensus 490 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 569 (879)
..+..+..+++.. +.+.++-..++.+.+|.+|++.+|. +..+...+..+.+|++|++++| .+..+.. +..|
T Consensus 69 ~~l~~l~~l~l~~------n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQ------NLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTL 139 (414)
T ss_pred HHhHhHHhhccch------hhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccc-ccccccc-hhhc
Confidence 3556677777777 6777755668899999999999999 8888776888999999999998 6777753 7788
Q ss_pred cccceEecCCcccccCCccCCCCCCCCcCCceeecc
Q 002800 570 INLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVSV 605 (879)
Q Consensus 570 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~ 605 (879)
..|+.|++.+|.+..+. ++..+++|+.+.+..+..
T Consensus 140 ~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRI 174 (414)
T ss_pred cchhhheeccCcchhcc-CCccchhhhcccCCcchh
Confidence 88999999999888774 466688888887665544
No 162
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.00029 Score=80.80 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=40.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-.+++|.++.++++..++..... .....+++.|+|++|+||||+++.++.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999876532 122446799999999999999999997
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=0.00029 Score=65.53 Aligned_cols=86 Identities=24% Similarity=0.260 Sum_probs=46.3
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC-
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN- 187 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k- 187 (879)
..+.|+|++|+||||+|+.++. ........++++..+ ............... ..... .........+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLLLIIVG-GKKAS-GSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHHhhhhh-ccCCC-CCHHHHHHHHHHHHHhcC
Confidence 4688999999999999999998 333332335566555 111111111011111 11111 12222233444444444
Q ss_pred eeEEEeeccccc
Q 002800 188 RFLLVLDDVRSR 199 (879)
Q Consensus 188 ~~LlVlDdv~~~ 199 (879)
..++++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999875
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.67 E-value=0.00032 Score=84.72 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=83.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc------ceEEE-EEeecchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF------SKRIW-VSASYPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~w-v~~s~~~~~~ 154 (879)
..+|||+.+++++++.|.... ..-+.++|++|+||||+|+.++. ++.... ...+| +..+ .+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~--~i~~~~vp~~l~~~~~~~l~l~----~l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMG----AL 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHH--HhhcCCCchhhCCCEEEEEehh----hh
Confidence 469999999999999998753 23456999999999999999998 332211 12222 2211 11
Q ss_pred HHHHHHHhccCCCCCchhHH-HHHHHHHHHh-hCCeeEEEeecccccch--------HhHHHHHHhccCCCCCcEEEEEc
Q 002800 155 ARAILESLKDGVSSDLVEID-TVLQQISHYI-QGNRFLLVLDDVRSRYF--------NYWQQLMYSLKSGSEGSRILVTT 224 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~~-~~~~~l~~~l-~~k~~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~iiiTt 224 (879)
. . +.. ...+.+ .+...+.+.- .+++.+|++|+++.... +.-+.+...+. . ..-++|-||
T Consensus 246 ~-------a-g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~-g~l~~IgaT 314 (857)
T PRK10865 246 V-------A-GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R-GELHCVGAT 314 (857)
T ss_pred h-------h-ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-c-CCCeEEEcC
Confidence 0 0 110 011122 2222222221 25789999999975310 11122322222 1 234555555
Q ss_pred cchhhhhh-------cCccceEeCCCCCHHhHHHHHHHHh
Q 002800 225 CEENVINK-------MGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 225 R~~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
...+.... ......+.+..-+.++..+++....
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 44432111 1123467777779999999886554
No 165
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00097 Score=70.30 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=104.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc----------------ccceEEEEEeecchH
Q 002800 89 GEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT----------------HFSKRIWVSASYPEI 152 (879)
Q Consensus 89 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----------------~f~~~~wv~~s~~~~ 152 (879)
...+.+.+.+..+. -...+.++|+.|+||+++|..++...-... ..+...|+....+.
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~- 84 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR- 84 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc-
Confidence 44566777776543 344578999999999999999886321111 01112222100000
Q ss_pred HHHHHHHHHhccCCC-CCchhHHHHHHHHHHHh-----hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc
Q 002800 153 RIARAILESLKDGVS-SDLVEIDTVLQQISHYI-----QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE 226 (879)
Q Consensus 153 ~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~ 226 (879)
. +.. ...-.++++. .+.+.+ .+++=++|+|+++..+...-..+...+.....++.+|++|.+
T Consensus 85 ----------~-~~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 85 ----------T-GDKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred ----------c-cccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 0 000 0001122222 222222 245568999999987777778888888887778888887776
Q ss_pred h-hhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 227 E-NVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 227 ~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
. .+.... .....+.+.+++.+++.+.+.... .+ ...+..++..++|.|+.+..+.
T Consensus 153 ~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~-------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 153 PARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS-------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC-------hHHHHHHHHHcCCCHHHHHHHh
Confidence 3 333222 235688999999999998887531 11 1125677999999998765544
No 166
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00011 Score=78.58 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=40.1
Q ss_pred cCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCC
Q 002800 646 LGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR 725 (879)
Q Consensus 646 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 725 (879)
+..+.+++.|+++.|.+.. +. ..|++|++|.+.++......|..+ .++|+.|.+++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-----------LP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-----------LP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-----------cC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-
Confidence 5556777777777664321 11 234567777777654322214332 3567777777775555444
Q ss_pred CCCCCccceeecc
Q 002800 726 LGELPSLESLTVR 738 (879)
Q Consensus 726 l~~l~~L~~L~L~ 738 (879)
++|+.|.+.
T Consensus 112 ----~sLe~L~L~ 120 (426)
T PRK15386 112 ----ESVRSLEIK 120 (426)
T ss_pred ----cccceEEeC
Confidence 345555554
No 167
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.9e-05 Score=53.93 Aligned_cols=41 Identities=41% Similarity=0.596 Sum_probs=34.7
Q ss_pred CcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCc
Q 002800 493 TCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPE 540 (879)
Q Consensus 493 ~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~ 540 (879)
++|++|++++ +.+.++|..+++|++|++|++++|. +.++|.
T Consensus 1 ~~L~~L~l~~------N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN------NQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETS------SS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccC------CCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 4799999999 7899999889999999999999998 877764
No 168
>PRK10536 hypothetical protein; Provisional
Probab=97.63 E-value=0.00046 Score=69.19 Aligned_cols=135 Identities=15% Similarity=0.169 Sum_probs=76.1
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-----------cc
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-----------YP 150 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-----------~~ 150 (879)
..+.+|......+..++... .+|.+.|++|.|||+||.+++.+.-..+.|+..+-..-. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 45778888999999988642 388999999999999999988742223445543332111 11
Q ss_pred hHHHHHHHHHHhccC--CCCCchhHHHHHH--------HHHHHhhCCee---EEEeecccccchHhHHHHHHhccCCCCC
Q 002800 151 EIRIARAILESLKDG--VSSDLVEIDTVLQ--------QISHYIQGNRF---LLVLDDVRSRYFNYWQQLMYSLKSGSEG 217 (879)
Q Consensus 151 ~~~~~~~i~~~l~~~--~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~g 217 (879)
..+-+.-.+..+... .-......+.... .=-.+++++.+ +||+|.+...+..+...+.. ..+.+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~ 203 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCC
Confidence 222111111111100 0000011111100 00234566654 99999999876655555544 45689
Q ss_pred cEEEEEccch
Q 002800 218 SRILVTTCEE 227 (879)
Q Consensus 218 s~iiiTtR~~ 227 (879)
|+||+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999987543
No 169
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00077 Score=80.59 Aligned_cols=122 Identities=14% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIAR 156 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~ 156 (879)
...++|.++.++.+.+.+...... ......++.++|+.|+|||+||+.++. .. +...+.+..+ +.....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhccc--
Confidence 346899999999999888743210 112344678999999999999999987 33 2223444444 211111
Q ss_pred HHHHHhccC-CCCCchhHHHHHHHHHHHhhCCe-eEEEeecccccchHhHHHHHHhccCC
Q 002800 157 AILESLKDG-VSSDLVEIDTVLQQISHYIQGNR-FLLVLDDVRSRYFNYWQQLMYSLKSG 214 (879)
Q Consensus 157 ~i~~~l~~~-~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~ 214 (879)
+...++.. ...+......+. +.++.++ -+++||+++....+.++.+...+..+
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~----~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLT----EAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHH----HHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11112200 011112222333 3333344 49999999998888888888887653
No 170
>CHL00176 ftsH cell division protein; Validated
Probab=97.62 E-value=0.00082 Score=77.84 Aligned_cols=177 Identities=15% Similarity=0.185 Sum_probs=99.1
Q ss_pred CCceeeehhhHHHHHHHH---hcCCC---CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHH
Q 002800 81 SSQVIVRDGEKNRLLNLL---LCESS---EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~ 153 (879)
-.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||++|+.++.. .... |+.++ .+..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s~f~- 253 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGSEFV- 253 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHHHHH-
Confidence 357889887666655544 32211 01122445889999999999999999873 2222 34443 1111
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccc----------hHhH----HHHHHhccC--CCCC
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRY----------FNYW----QQLMYSLKS--GSEG 217 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~g 217 (879)
.... + .....+...+.+.....+.+|++||++... ...+ ..+...+.. ...+
T Consensus 254 ------~~~~-g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 254 ------EMFV-G-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred ------HHhh-h-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1111 0 011233344445556778999999996421 1122 223322222 2345
Q ss_pred cEEEEEccchhhhhh-c----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCC
Q 002800 218 SRILVTTCEENVINK-M----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKN 283 (879)
Q Consensus 218 s~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~g 283 (879)
..||.||...+.... + .-+..+.+...+.++-.+++..++...... + ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----P--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----h--hHHHHHHHhcCCC
Confidence 567777766443222 1 124678999999999999998887543221 1 1124567777777
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00081 Score=72.17 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=94.4
Q ss_pred ceee-ehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 83 QVIV-RDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 83 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
.++| .+..++.+.+.+..+. -.....++|+.|+||||+|+.+++..--....... -| ..-...+.+...
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~--~c---g~C~~c~~~~~~ 75 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE--PC---GTCTNCKRIDSG 75 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CC---CcCHHHHHHhcC
Confidence 4667 6667788888876543 34566899999999999999987631111100000 00 000000000000
Q ss_pred -------hc-cCCCCCchhHHHHHHHHHH-HhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh-hhh
Q 002800 162 -------LK-DGVSSDLVEIDTVLQQISH-YIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN-VIN 231 (879)
Q Consensus 162 -------l~-~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~ 231 (879)
+. .+.....++..++.+.+.. -..+++=++|+|+++....+....+...+.....++.+|++|.+.. +..
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 00 0011111222222222211 0224455789999988777778889999988778888888776643 322
Q ss_pred hc-CccceEeCCCCCHHhHHHHHHHH
Q 002800 232 KM-GNTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 232 ~~-~~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
.. .....+++.+++.++..+.+...
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 24578999999999998888653
No 172
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.59 E-value=0.0003 Score=76.97 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=85.2
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeec-chHHHHHHH-HH
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASY-PEIRIARAI-LE 160 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~i-~~ 160 (879)
.++||++.++.+...+..+.. |.|.|++|+|||++|+.+.....-...|. ++.+.+ ...+++..+ +.
T Consensus 21 ~i~gre~vI~lll~aalag~h--------VLL~GpPGTGKT~LAraLa~~~~~~~~F~---~~~~~fttp~DLfG~l~i~ 89 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGES--------VFLLGPPGIAKSLIARRLKFAFQNARAFE---YLMTRFSTPEEVFGPLSIQ 89 (498)
T ss_pred hccCcHHHHHHHHHHHccCCC--------EEEECCCChhHHHHHHHHHHHhcccCcce---eeeeeecCcHHhcCcHHHh
Confidence 599999999999999986643 77999999999999999987211112232 122222 222222211 11
Q ss_pred HhccCCCCCchhHHHHHHHHHHHhhC---CeeEEEeecccccchHhHHHHHHhccCC---------CCCcEEEEEccchh
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHYIQG---NRFLLVLDDVRSRYFNYWQQLMYSLKSG---------SEGSRILVTTCEEN 228 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~---------~~gs~iiiTtR~~~ 228 (879)
... . . ..+.+...+ .--++++|+++.........+...+... .-..++++++.++
T Consensus 90 ~~~-~-~----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~- 156 (498)
T PRK13531 90 ALK-D-E----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE- 156 (498)
T ss_pred hhh-h-c----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-
Confidence 111 0 0 000011111 1128999999998877777777776321 1123565555442
Q ss_pred hhh-------hcC-ccceEeCCCCCHHh-HHHHHHHH
Q 002800 229 VIN-------KMG-NTRMISLGTLSEEA-SWSLFCLV 256 (879)
Q Consensus 229 v~~-------~~~-~~~~~~l~~L~~~e-~~~Lf~~~ 256 (879)
+.. .+. -.-.+.+++++.++ -.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 111 13467899998644 47777653
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00026 Score=81.53 Aligned_cols=119 Identities=18% Similarity=0.309 Sum_probs=79.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhccccccccc---ceEEEEEee-cchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF---SKRIWVSAS-YPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s-~~~~~~ 154 (879)
..++|.++.+..+.+.+.....+ ......+....|+.|+|||.||+.++.. -| +..+-+..| |..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHHH-
Confidence 57999999999999998765431 2334567778999999999999999872 23 333334444 22222
Q ss_pred HHHHHHHhccCCCCCc---hhHHHHHHHHHHHhhCCee-EEEeecccccchHhHHHHHHhccCC
Q 002800 155 ARAILESLKDGVSSDL---VEIDTVLQQISHYIQGNRF-LLVLDDVRSRYFNYWQQLMYSLKSG 214 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~---~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 214 (879)
-+..+- +.+.+. .+...+ .+.++.++| +|.||+|+...++.++-+.+.|.++
T Consensus 565 ---sVSrLI-GaPPGYVGyeeGG~L----TEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 ---SVSRLI-GAPPGYVGYEEGGQL----TEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHHHh-CCCCCCceeccccch----hHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 123333 333322 233334 444466888 7788999999999999999998875
No 174
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=9.9e-05 Score=79.03 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=13.1
Q ss_pred ccceEecCCcccccCCccCCCCCCCCcCC
Q 002800 571 NLWHLVNDGTSLSYMPKGIERLTCLRTLN 599 (879)
Q Consensus 571 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 599 (879)
+|++|++++|....+|..+. .+|+.|.
T Consensus 157 SLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 157 SLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred cccEEEecCCCcccCccccc--ccCcEEE
Confidence 56666666655444443332 3444444
No 175
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00055 Score=72.26 Aligned_cols=178 Identities=9% Similarity=0.020 Sum_probs=104.9
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc---ce-----EEEEEe-e-cchHHHHHHHH
Q 002800 90 EKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF---SK-----RIWVSA-S-YPEIRIARAIL 159 (879)
Q Consensus 90 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~-s-~~~~~~~~~i~ 159 (879)
..+.|.+.+..+. -.....++|+.|+||+++|+.++...--.... .| +-++.. + +|...+..
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p--- 81 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP--- 81 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc---
Confidence 3456667776543 23456789999999999999998731111100 00 000000 0 11110000
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhhc-Ccc
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINKM-GNT 236 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~-~~~ 236 (879)
.. +.....+...++.+.+...- .+++=++|+|+++.........+...+....+++.+|++|.+. .+.... ...
T Consensus 82 --~~-~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 82 --ID-NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred --cc-CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 00 11122233333333332221 2455588899999988888899999999888888888888764 333232 235
Q ss_pred ceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 237 RMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 237 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
..+.+.+++.++..+.+..... .. ...+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~---~~-------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS---AE-------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc---cC-------hHHHHHHHHHcCCCHHHH
Confidence 7899999999999988886542 11 112456688899999644
No 176
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0055 Score=64.60 Aligned_cols=171 Identities=10% Similarity=0.040 Sum_probs=104.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc------------------ccceEEEEEeecc
Q 002800 89 GEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT------------------HFSKRIWVSASYP 150 (879)
Q Consensus 89 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~s~~ 150 (879)
...+++.+.+..+. -...+.++|+.|+||+++|+.++...--.. ..+...|+.-.
T Consensus 10 ~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~-- 82 (319)
T PRK06090 10 PVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE-- 82 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC--
Confidence 34566666666543 344678999999999999999886211110 00111111100
Q ss_pred hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-h
Q 002800 151 EIRIARAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-N 228 (879)
Q Consensus 151 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~ 228 (879)
..+.....+.+.++.+.+... ..+++=++|+|+++.........+...+....+++.+|++|.+. .
T Consensus 83 ------------~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (319)
T PRK06090 83 ------------KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR 150 (319)
T ss_pred ------------cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 001111222222222222111 12344588999999988888899999998888888887777664 3
Q ss_pred hhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 229 VINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 229 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
+.... .....+.+.+++.+++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 33332 345789999999999999886531 1 1 1346788999999977655
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.56 E-value=0.0018 Score=61.53 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=80.4
Q ss_pred eehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc------------------ccceEEEEEe
Q 002800 86 VRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT------------------HFSKRIWVSA 147 (879)
Q Consensus 86 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~ 147 (879)
|.++..+.|.+.+..+. -...+.++|+.|+||+|+|..+++..--.. ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 56677788888887653 345678999999999999999887311111 1222333321
Q ss_pred ecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhh-----CCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEE
Q 002800 148 SYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQ-----GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILV 222 (879)
Q Consensus 148 s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii 222 (879)
. .....-..++.. .+.+.+. ++.=++|+||++....+.+..++..+.....++++|+
T Consensus 76 ~-----------------~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 D-----------------KKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp T-----------------TSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred c-----------------cccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 1 000011233333 3333332 3455899999999888999999999999889999999
Q ss_pred Eccchh-hhhhc-CccceEeCCCCC
Q 002800 223 TTCEEN-VINKM-GNTRMISLGTLS 245 (879)
Q Consensus 223 TtR~~~-v~~~~-~~~~~~~l~~L~ 245 (879)
+|++.+ +.... .....+.+.+++
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 998854 22222 234566666653
No 178
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.55 E-value=0.0025 Score=71.35 Aligned_cols=205 Identities=14% Similarity=0.132 Sum_probs=121.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccc---cccccceEEEEEee----cchHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDA---VKTHFSKRIWVSAS----YPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f~~~~wv~~s----~~~~~ 153 (879)
+..+-+|+.+..+|.+.+...-.. +..-+.+.|.|.+|.|||+.+..|.+..+ -.+.-+.-.+|.+. ....+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 456889999999999888654321 12344889999999999999999998322 11222222334444 77889
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhh-----CCeeEEEeecccccchHhHHHHHHhccC-CCCCcEEEEEccc-
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQ-----GNRFLLVLDDVRSRYFNYWQQLMYSLKS-GSEGSRILVTTCE- 226 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR~- 226 (879)
++..|...+........... +.+..+.. .+..+|++|+++..-...-+-+...|.| ..++|+++|.+-.
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al----~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAAL----EALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHhcccCcccHHHHH----HHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999999982222222333 33333332 4568889999855311122345555655 4678887665432
Q ss_pred -hhhh---------hhcCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhh
Q 002800 227 -ENVI---------NKMGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGS 293 (879)
Q Consensus 227 -~~v~---------~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~ 293 (879)
.+.. ..+ ....+..+|.+.++-.++......+.... .....+=++++++.-.|-.-.|+.+.-+
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f--~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAF--ENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhc--chhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1111 111 13467788888888777777665443221 1223334456666666655555554433
No 179
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=3e-06 Score=93.47 Aligned_cols=105 Identities=27% Similarity=0.278 Sum_probs=59.5
Q ss_pred hhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCcc-cccCCCCcEEeccCcccccccchhh
Q 002800 488 LFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPES-LCDLYNLETMELSWCISLKRLPQRM 566 (879)
Q Consensus 488 ~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~i 566 (879)
.+.-++.|+.|||++ |.+.+.- .+..|.+|+.|||++|. +..+|.- ...+. |+.|.+++| .+.++- ++
T Consensus 182 SLqll~ale~LnLsh------Nk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~-gi 250 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSH------NKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALTTLR-GI 250 (1096)
T ss_pred HHHHHHHhhhhccch------hhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHHhhh-hH
Confidence 344556677777776 4554443 56666677777777776 6666642 22233 777777766 455553 46
Q ss_pred hcccccceEecCCcccccCC--ccCCCCCCCCcCCceee
Q 002800 567 GQLINLWHLVNDGTSLSYMP--KGIERLTCLRTLNEFIV 603 (879)
Q Consensus 567 ~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~ 603 (879)
.+|.+|++||+++|-+.... ..++.|..|..|++-.+
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 67777777777766543221 12344455555554443
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.54 E-value=0.0012 Score=80.00 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=78.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~ 157 (879)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+++. ....-...+.+..+ +....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~~---- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEKH---- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhhh----
Confidence 46899999999999888753210 1122347889999999999999999872 21111223334433 22111
Q ss_pred HHHHhccCCCCC---chhHHHHHHHHHHHhhCCe-eEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEE
Q 002800 158 ILESLKDGVSSD---LVEIDTVLQQISHYIQGNR-FLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILV 222 (879)
Q Consensus 158 i~~~l~~~~~~~---~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iii 222 (879)
....+. +.+.. ......+. +.++.++ -+|+||++...+.+.+..+...+..+. ..+-||+
T Consensus 642 ~~~~Li-G~~pgy~g~~~~g~l~----~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 642 SVSRLV-GAPPGYVGYEEGGYLT----EAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred hHHHHh-CCCCcccccchhHHHH----HHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 122222 22211 11122222 2233233 599999999888888888888775431 2233777
Q ss_pred Eccc
Q 002800 223 TTCE 226 (879)
Q Consensus 223 TtR~ 226 (879)
||..
T Consensus 717 TSN~ 720 (857)
T PRK10865 717 TSNL 720 (857)
T ss_pred eCCc
Confidence 8765
No 181
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.52 E-value=0.00032 Score=84.44 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=79.3
Q ss_pred CceeeehhhHHHHHHHHhcCCC---CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHH-H
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS---EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIAR-A 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~-~ 157 (879)
..++|.++.++.+.+.+..... .......++.++|+.|+|||.+|+.++.. .-+... .++.+. +.+... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~--~~~~~d--mse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQ--NLITIN--MSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCc--ceEEEe--HHHhhhhh
Confidence 4799999999999998864311 11234457889999999999999998873 211112 222222 111111 1
Q ss_pred HHHHhccCCCCC---chhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEE
Q 002800 158 ILESLKDGVSSD---LVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVT 223 (879)
Q Consensus 158 i~~~l~~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiT 223 (879)
-...+. +.+.+ ......+.+.+++ ...-+|+||+++..+++.++.+...+..+. ..+-||+|
T Consensus 640 ~~~~l~-g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TVSRLK-GSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhcccc-CCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111222 22111 1122233333332 345699999999988888888888876542 44556677
Q ss_pred ccc
Q 002800 224 TCE 226 (879)
Q Consensus 224 tR~ 226 (879)
|--
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 182
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=4.1e-05 Score=75.98 Aligned_cols=202 Identities=21% Similarity=0.182 Sum_probs=115.4
Q ss_pred ccCCcccEEEcCCCCCcccccccc---cCcccccCCCCCEEecccCCC---CcccCcccccCCCCcEEeccCccc-cccc
Q 002800 490 DNLTCLRSLDLSNQDNGFYNVIKR---VPRGIRKLLHLRYLNLSRNSK---IAELPESLCDLYNLETMELSWCIS-LKRL 562 (879)
Q Consensus 490 ~~l~~Lr~L~L~~~~~~~~~~l~~---lp~~i~~L~~Lr~L~L~~~~~---i~~lP~~i~~L~~L~~L~L~~~~~-l~~l 562 (879)
...+.++.|||.+ |.+.+ +-.-+.+|++|++|+|+.|+. |+.+| -.+.||++|-|.|+.. ....
T Consensus 68 ~~~~~v~elDL~~------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 68 SSVTDVKELDLTG------NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred HHhhhhhhhhccc------chhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhh
Confidence 4567788888887 55543 223346788888888888762 23344 2456788888877632 1234
Q ss_pred chhhhcccccceEecCCcccccCCc---cCCC-CCCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCCh
Q 002800 563 PQRMGQLINLWHLVNDGTSLSYMPK---GIER-LTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSK 638 (879)
Q Consensus 563 p~~i~~L~~L~~L~l~~~~l~~lp~---~i~~-l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~ 638 (879)
.+.+..+++++.|.++.|++..+-. .+.. -+.+.+|+...+.. ..-.+.+
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~----------~~w~~~~---------------- 192 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE----------QLWLNKN---------------- 192 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH----------HHHHHHH----------------
Confidence 4556677777777777765332210 0111 11222332111110 0000000
Q ss_pred hcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCcc-CcchhhcccCCcEEeEcCC
Q 002800 639 DEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTL-SSIFIMSLAKLRSMSLDRC 717 (879)
Q Consensus 639 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~L~~~ 717 (879)
..-..++++..+.+..|.+.. ...-++..+++.+..|++..+.+..+ .-+.+..++.|..|.++++
T Consensus 193 -----~l~r~Fpnv~sv~v~e~PlK~--------~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 193 -----KLSRIFPNVNSVFVCEGPLKT--------ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred -----hHHhhcccchheeeecCcccc--------hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 011234688888888776432 22223456677788888888766443 1123458999999999999
Q ss_pred CCCCCCCC-------CCCCCccceeeccc
Q 002800 718 INLEQLPR-------LGELPSLESLTVRN 739 (879)
Q Consensus 718 ~~~~~lp~-------l~~l~~L~~L~L~~ 739 (879)
..++.+.. ++.|++++.|+=+.
T Consensus 260 Pl~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 260 PLSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred cccccccCCcceEEEEeeccceEEecCcc
Confidence 88776643 56788888877654
No 183
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.49 E-value=0.0017 Score=62.50 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=63.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-ccceEEEEEeecchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-HFSKRIWVSASYPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~i~~ 160 (879)
.++||-++.++++.-...++ +.+-+.|.||+|+||||-+..+++ +.-+ .+ ++-+-
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr--~LLG~~~----------------ke~vL 82 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAR--ELLGDSY----------------KEAVL 82 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHH--HHhChhh----------------hhHhh
Confidence 47999999999987776654 566788999999999999988887 2221 11 11111
Q ss_pred HhccCCCCCchhHHHHHHHHHHHhh-------CCeeEEEeecccccchHhHHHHHHh
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHYIQ-------GNRFLLVLDDVRSRYFNYWQQLMYS 210 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~l~-------~k~~LlVlDdv~~~~~~~~~~l~~~ 210 (879)
.+. ..+....+-....++.+-+ ++.=.+|||.+++.....-..+...
T Consensus 83 ELN---ASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 83 ELN---ASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred hcc---CccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 222 2233344445555555443 3445789999988543333344433
No 184
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.49 E-value=0.001 Score=75.90 Aligned_cols=208 Identities=15% Similarity=0.155 Sum_probs=107.5
Q ss_pred CCceeeehhhHHHHHHHHh---cCCC---CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLL---CESS---EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRI 154 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 154 (879)
-.+++|.++.++++.+++. .... .+....+-+.++|++|+|||++|+.++.. .... |+.++ ..++
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~--~~~~ 124 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSIS--GSDF 124 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeecc--HHHH
Confidence 3578898877766655443 2110 01123345789999999999999999973 2222 23333 1111
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccc----------hHhHHH----HHHhccC--CCCCc
Q 002800 155 ARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRY----------FNYWQQ----LMYSLKS--GSEGS 218 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~gs 218 (879)
..... +. ....+...+.......+.+|++|+++... .+.+.. +...+.. ...+.
T Consensus 125 ----~~~~~-g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 125 ----VEMFV-GV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred ----HHHHh-cc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11111 11 11223333444444667899999996521 112222 2222221 23345
Q ss_pred EEEEEccchhhhhh-c----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCC-hhHHHHHh
Q 002800 219 RILVTTCEENVINK-M----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNL-PLAVKVIG 292 (879)
Q Consensus 219 ~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~gl-PLai~~~~ 292 (879)
.||.||...+.... + .-+..+.+...+.++-.++|..+....... ...+ ...+++.+.|. +-.|..+.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~--~~~~----l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA--PDVD----LKAVARRTPGFSGADLANLL 268 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC--cchh----HHHHHHhCCCCCHHHHHHHH
Confidence 56667765432211 1 235678999999999999998776443221 1111 34677777763 33333332
Q ss_pred hh-----cc-cC--CCHHHHHHHHhhhhc
Q 002800 293 SH-----LR-FK--RNIGEWLNVLKSKIW 313 (879)
Q Consensus 293 ~~-----l~-~~--~~~~~w~~~~~~~~~ 313 (879)
.. .+ .+ -+.++.+.+++...+
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 21 11 11 245666666665443
No 185
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=5.4e-05 Score=88.21 Aligned_cols=131 Identities=26% Similarity=0.294 Sum_probs=91.1
Q ss_pred CCCeeEEEEEecccCC--Cccc-ccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCccc
Q 002800 442 NENIQHLMIKFETERK--FPTS-VYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGI 518 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~--~~~~-~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 518 (879)
..++++|++.+...-. -+.. -..+|.||+|.+.+-. .....+...+.++++|+.||+++ +++..+ ..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~lc~sFpNL~sLDIS~------TnI~nl-~GI 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQLCASFPNLRSLDISG------TNISNL-SGI 191 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce--ecchhHHHHhhccCccceeecCC------CCccCc-HHH
Confidence 3457777776643221 1111 2457999999998742 11333456678999999999999 678777 679
Q ss_pred ccCCCCCEEecccCCCCcccC--cccccCCCCcEEeccCcccccccchh-------hhcccccceEecCCcccc
Q 002800 519 RKLLHLRYLNLSRNSKIAELP--ESLCDLYNLETMELSWCISLKRLPQR-------MGQLINLWHLVNDGTSLS 583 (879)
Q Consensus 519 ~~L~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~l~ 583 (879)
++|++|+.|.+++-. +..-+ ..+.+|++|++||+|...... .+.- -..|++||.||.+++.+.
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 999999999998766 44322 357899999999999764322 2221 125899999999998644
No 186
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0031 Score=65.03 Aligned_cols=203 Identities=11% Similarity=0.161 Sum_probs=117.6
Q ss_pred ceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHH
Q 002800 83 QVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIA 155 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 155 (879)
++=|-++.+++|.+.+.-+--. +-...+=|.++|++|.|||-||++|++ +....| +.+. -
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvv------g 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVV------G 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEec------c
Confidence 4567788888888876543210 222445577999999999999999999 555444 3332 1
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHhh-CCeeEEEeeccccc-----------chH---hHHHHHHhccCC--CCCc
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHYIQ-GNRFLLVLDDVRSR-----------YFN---YWQQLMYSLKSG--SEGS 218 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~~--~~gs 218 (879)
.++++..- + +...++..+.+.-+ ..+..|.+|.++.. +.+ .+-++...+..+ ....
T Consensus 219 SElVqKYi-G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 219 SELVQKYI-G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred HHHHHHHh-c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 22222222 1 12344555555544 45789999998542 222 333444444443 3456
Q ss_pred EEEEEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh----hHHH
Q 002800 219 RILVTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP----LAVK 289 (879)
Q Consensus 219 ~iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP----Lai~ 289 (879)
|||..|-..++.... .-+..+++..-+.+.-.++|.-++.+-... ..-+ ...+++.+.|.- -||.
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~--~dvd----~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA--DDVD----LELLARLTEGFSGADLKAIC 365 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc--cCcC----HHHHHHhcCCCchHHHHHHH
Confidence 889888776654432 136778888666666667777666544332 1122 234566666654 5566
Q ss_pred HHhhhcccC-----CCHHHHHHHHhhh
Q 002800 290 VIGSHLRFK-----RNIGEWLNVLKSK 311 (879)
Q Consensus 290 ~~~~~l~~~-----~~~~~w~~~~~~~ 311 (879)
+=|++++-+ -+.+++.++.++.
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 667776422 2455666555543
No 187
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.45 E-value=0.0046 Score=61.37 Aligned_cols=123 Identities=17% Similarity=0.244 Sum_probs=71.4
Q ss_pred ccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHH
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARA 157 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 157 (879)
.++-.+++|.|.+++.|++-...-- .+....-|.+||..|.|||++++++.+ +....= .+ -|.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~--~y~~~G-LR-lIev~--------- 87 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLN--EYADQG-LR-LIEVS--------- 87 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHH--HHhhcC-ce-EEEEC---------
Confidence 3445689999999988876432211 112344577899999999999999987 222211 11 11211
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC---CCCcEEEEEccc
Q 002800 158 ILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG---SEGSRILVTTCE 226 (879)
Q Consensus 158 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iiiTtR~ 226 (879)
..+..++..+.+.++. ...||+|++||..- .+......+...+..+ .|.-.+|.+|.+
T Consensus 88 ---------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 88 ---------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ---------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 1122334444444443 45799999999843 2234566677776643 233344444444
No 188
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.42 E-value=0.0044 Score=60.78 Aligned_cols=180 Identities=13% Similarity=0.148 Sum_probs=104.1
Q ss_pred cCCCceeeehhhH---HHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHH
Q 002800 79 VDSSQVIVRDGEK---NRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIA 155 (879)
Q Consensus 79 ~~~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 155 (879)
..-+++||.++.+ .-|++.|.++..-+....+-|..+|++|.|||.+|+++++ ..+..| +.+. ..
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~-----l~vk-----at 185 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL-----LLVK-----AT 185 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce-----EEec-----hH
Confidence 3346799988755 3466666665432455678899999999999999999999 333333 2221 11
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeeccccc------------chHhHHHHHHhccC--CCCCcEE
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSR------------YFNYWQQLMYSLKS--GSEGSRI 220 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~------------~~~~~~~l~~~l~~--~~~gs~i 220 (879)
.-|-+.++ +....+..+.+. -+.-++++.+|.++-. -.+....+...+.. .+.|...
T Consensus 186 ~liGehVG--------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 186 ELIGEHVG--------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHHhh--------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 11222222 112222222222 2356899999987531 01222333333332 3567777
Q ss_pred EEEccchhhhhhcC---ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCC
Q 002800 221 LVTTCEENVINKMG---NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNL 284 (879)
Q Consensus 221 iiTtR~~~v~~~~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~gl 284 (879)
|..|-+.+.....- -...++..--+++|-.+++...+-.-..+.... .+.++++.+|+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~------~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD------LRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC------HHHHHHHhCCC
Confidence 77777766554432 234677777788999999988875443331111 34566666665
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.41 E-value=0.00076 Score=81.93 Aligned_cols=134 Identities=16% Similarity=0.243 Sum_probs=79.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~ 157 (879)
..++|.+..++.+.+.+...... ......++.++|+.|+|||++|+.++.. ....-...+.+..+ +......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 46999999999999998764210 1112456789999999999999999972 22222223334444 2221111
Q ss_pred HHHHhccCCCCC---chhHHHHHHHHHHHhhCCe-eEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEE
Q 002800 158 ILESLKDGVSSD---LVEIDTVLQQISHYIQGNR-FLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILV 222 (879)
Q Consensus 158 i~~~l~~~~~~~---~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iii 222 (879)
..+. +.+.+ ......+...+ +.++ .+|+||+++..+.+.+..+...+..+. ..+-||+
T Consensus 641 --~~l~-g~~~g~~g~~~~g~l~~~v----~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 641 --ARLI-GAPPGYVGYEEGGQLTEAV----RRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred --HHhc-CCCCCccCcccccHHHHHH----HcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 1221 11111 11122333333 3333 489999999998899999988886541 2344777
Q ss_pred Eccc
Q 002800 223 TTCE 226 (879)
Q Consensus 223 TtR~ 226 (879)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7754
No 190
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.40 E-value=0.0039 Score=64.63 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=41.4
Q ss_pred CeeEEEeecccccchHhHHHHHHhccCC----------------CCCcEEEEEccchhhh------h-hcCccceEeCCC
Q 002800 187 NRFLLVLDDVRSRYFNYWQQLMYSLKSG----------------SEGSRILVTTCEENVI------N-KMGNTRMISLGT 243 (879)
Q Consensus 187 k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iiiTtR~~~v~------~-~~~~~~~~~l~~ 243 (879)
+...+++|++...+.+.+..+...+... .++.+||+|+-...-. . .......+.+..
T Consensus 105 ~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~ 184 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDY 184 (262)
T ss_pred cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCC
Confidence 3468999999998777777777766431 1356788887643110 0 001123455555
Q ss_pred CCHHhHHHHHHHH
Q 002800 244 LSEEASWSLFCLV 256 (879)
Q Consensus 244 L~~~e~~~Lf~~~ 256 (879)
.+.++-.+++..+
T Consensus 185 P~~~~e~~Il~~~ 197 (262)
T TIGR02640 185 PDIDTETAILRAK 197 (262)
T ss_pred CCHHHHHHHHHHh
Confidence 5666666666554
No 191
>PRK12377 putative replication protein; Provisional
Probab=97.37 E-value=0.00089 Score=67.97 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=56.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
...+.|+|.+|+|||+||.++++ ........++++++ .+++..+-.... .. ..... +.+.+ .+-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~----~~l~~~l~~~~~-~~----~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV----PDVMSRLHESYD-NG----QSGEK----FLQEL-CKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH----HHHHHHHHHHHh-cc----chHHH----HHHHh-cCC
Confidence 35688999999999999999999 44444444566654 344444444332 10 11111 22222 355
Q ss_pred eEEEeecccccchHhHHH--HHHhccCC-CCCcEEEEEcc
Q 002800 189 FLLVLDDVRSRYFNYWQQ--LMYSLKSG-SEGSRILVTTC 225 (879)
Q Consensus 189 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iiiTtR 225 (879)
=||||||+.......|.. +...+... ...--+||||-
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 689999995543344443 33333321 22334677775
No 192
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.36 E-value=0.015 Score=62.54 Aligned_cols=212 Identities=12% Similarity=0.072 Sum_probs=127.5
Q ss_pred ehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHH-HHHhcccccccccceEEEEEee-----cchHHHHHHHHH
Q 002800 87 RDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLS-RQVFDIDAVKTHFSKRIWVSAS-----YPEIRIARAILE 160 (879)
Q Consensus 87 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s-----~~~~~~~~~i~~ 160 (879)
|.+..++|..||.... -..|.|.||-|+||+.|+ .++.++.+. +..+.+. .+...+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 6678899999999764 358889999999999999 777664222 5555543 344566666666
Q ss_pred HhccCC-----------------------CCCchhHHH-HH-------HHHHH-------------------Hhh---CC
Q 002800 161 SLKDGV-----------------------SSDLVEIDT-VL-------QQISH-------------------YIQ---GN 187 (879)
Q Consensus 161 ~l~~~~-----------------------~~~~~~~~~-~~-------~~l~~-------------------~l~---~k 187 (879)
+++... ..-....+. +. ..|++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 665211 110111111 11 11221 011 12
Q ss_pred eeEEEeecccccc---hHhHHHHHHhcc--CCCCCcEEEEEccchhhhh----hcC--ccceEeCCCCCHHhHHHHHHHH
Q 002800 188 RFLLVLDDVRSRY---FNYWQQLMYSLK--SGSEGSRILVTTCEENVIN----KMG--NTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 188 ~~LlVlDdv~~~~---~~~~~~l~~~l~--~~~~gs~iiiTtR~~~v~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
+=+||+||..... .--|+.+...-. ...+-.+||++|-+..... .+. ..+.+.+.-.+.+.|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 5689999986531 122333332211 1234568999998855443 332 3567899999999999999988
Q ss_pred hccCCCCc------------hh---hHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCHHH-HHHHHhh
Q 002800 257 AFYWRRSD------------EE---FQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGE-WLNVLKS 310 (879)
Q Consensus 257 a~~~~~~~------------~~---~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~-w~~~~~~ 310 (879)
........ .. ......-....++..||==.-+..+++.++...++++ -.++.++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 75431100 00 0112333556788899999999999999988876653 3444443
No 193
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0062 Score=65.10 Aligned_cols=183 Identities=13% Similarity=0.067 Sum_probs=106.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc---ceE-----EEEEee--cchHHHHHHH
Q 002800 89 GEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF---SKR-----IWVSAS--YPEIRIARAI 158 (879)
Q Consensus 89 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~-----~wv~~s--~~~~~~~~~i 158 (879)
..-+++.+.+..+. -.....+.|+.|+||+++|..++...--...- .|. -++... +|+..+..
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-- 81 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP-- 81 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec--
Confidence 34566777776653 34467799999999999999988631110000 010 000000 11110000
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHH-hhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh-hhhh-cCc
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHY-IQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN-VINK-MGN 235 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~-~~~ 235 (879)
-........+...++.+.+... ..+++=++|+|+++....+....+...+.....++.+|++|.+.+ +... ...
T Consensus 82 ---~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 82 ---EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred ---ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 0000112222333333332221 125556899999999877888889999988888888888877643 3333 233
Q ss_pred cceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 236 TRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 236 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
...+.+.+++.+++.+.+.... +.+ .+.+..++..++|.|..+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~---~~~-------~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREV---TMS-------QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cccccCCCCCHHHHHHHHHHcc---CCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 5678999999999998886532 111 122567899999999654433
No 194
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0091 Score=64.50 Aligned_cols=150 Identities=22% Similarity=0.258 Sum_probs=87.2
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
.....+.+.|++|+|||+||..++. ...|+.+=-++.. .+- + -.+......+.....+.-+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe------------~mi-G-~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPE------------DMI-G-LSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChH------------Hcc-C-ccHHHHHHHHHHHHHHhhcC
Confidence 4566778999999999999999975 3567754333210 000 0 01111222333334444456
Q ss_pred CeeEEEeeccccc----------chHhHHHHHHhccC---CCCCcEEEEEccchhhhhhcCc----cceEeCCCCCH-Hh
Q 002800 187 NRFLLVLDDVRSR----------YFNYWQQLMYSLKS---GSEGSRILVTTCEENVINKMGN----TRMISLGTLSE-EA 248 (879)
Q Consensus 187 k~~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~iiiTtR~~~v~~~~~~----~~~~~l~~L~~-~e 248 (879)
.--.||+||++.. +-.....+...+.. .++.--|+-||....+.+.|+. ...|.|..++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 6679999999763 11122333333333 2333345668888888888763 46789999988 77
Q ss_pred HHHHHHHHh-ccCCCCchhhHHHHHHHHHHHhhc
Q 002800 249 SWSLFCLVA-FYWRRSDEEFQELEHIGRQVIRKC 281 (879)
Q Consensus 249 ~~~Lf~~~a-~~~~~~~~~~~~l~~~~~~i~~~~ 281 (879)
..+.++..- |.. .+...++.+...+|
T Consensus 678 ~~~vl~~~n~fsd-------~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELNIFSD-------DEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHccCCCc-------chhHHHHHHHhccc
Confidence 777777543 322 22344455666655
No 195
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.00056 Score=70.33 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeE
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFL 190 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 190 (879)
-+.|+|++|+|||+||..+.+ ........++|+.+ .++...+..... ....+..... + .+.=|
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~----~~L~~~l~~a~~------~~~~~~~l~~----l-~~~dL 170 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT----TDLVQKLQVARR------ELQLESAIAK----L-DKFDL 170 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH----HHHHHHHHHHHh------CCcHHHHHHH----H-hcCCE
Confidence 478999999999999999987 33333334555543 444444433221 0112222222 2 23349
Q ss_pred EEeecccccchHhHH--HHHHhccCCCCCcEEEEEccc
Q 002800 191 LVLDDVRSRYFNYWQ--QLMYSLKSGSEGSRILVTTCE 226 (879)
Q Consensus 191 lVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iiiTtR~ 226 (879)
||+||+.......|. .+...+.....+..+||||..
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 999999654332332 233333321112368888875
No 196
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.31 E-value=0.00083 Score=65.55 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=64.1
Q ss_pred eeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-c----------chHH
Q 002800 85 IVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-Y----------PEIR 153 (879)
Q Consensus 85 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~----------~~~~ 153 (879)
..+..+-...++.|.. ..++.+.|++|.|||.||.+.+-+.-..++|+..+++.-. . +..+
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3456666777777773 3478899999999999999988765555778887776432 0 0000
Q ss_pred ----HHHHHHHHhccCCCCCchhHHHHHHH------HHHHhhCC---eeEEEeecccccchHhHHHHHHhccCCCCCcEE
Q 002800 154 ----IARAILESLKDGVSSDLVEIDTVLQQ------ISHYIQGN---RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRI 220 (879)
Q Consensus 154 ----~~~~i~~~l~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 220 (879)
.+.-+...+. .- ......+.+.+. --.+++++ ..++|+|++.+...+++..+.. ..+.||||
T Consensus 75 K~~p~~~p~~d~l~-~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~ski 149 (205)
T PF02562_consen 75 KMEPYLRPIYDALE-EL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKI 149 (205)
T ss_dssp ---TTTHHHHHHHT-TT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EE
T ss_pred HHHHHHHHHHHHHH-HH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEE
Confidence 0111111111 00 011111111110 01223343 4699999999876666666654 45789999
Q ss_pred EEEccch
Q 002800 221 LVTTCEE 227 (879)
Q Consensus 221 iiTtR~~ 227 (879)
|++--..
T Consensus 150 i~~GD~~ 156 (205)
T PF02562_consen 150 IITGDPS 156 (205)
T ss_dssp EEEE---
T ss_pred EEecCce
Confidence 9987543
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.001 Score=74.60 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=94.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIAR 156 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~ 156 (879)
+.+-+|-++.+++|++.|.-..-.....-+++++|||||+|||+|++.+++ .....| |.+| .|..++-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf-----vR~sLGGvrDEAEIRG 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF-----VRISLGGVRDEAEIRG 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE-----EEEecCccccHHHhcc
Confidence 457899999999999988643221223557999999999999999999998 555555 4444 34333210
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccch----HhHHHHHHhccCC-------------CCCcE
Q 002800 157 AILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYF----NYWQQLMYSLKSG-------------SEGSR 219 (879)
Q Consensus 157 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~ 219 (879)
.. ....+.. ...+++.+++. +.+.=+++||.++.... +--..++..|.+. --=|.
T Consensus 395 -----HR-RTYIGam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 395 -----HR-RTYIGAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred -----cc-ccccccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 00 0011111 12333444432 45677899999975311 0112233333221 01234
Q ss_pred E-EEEccc-hh-h-hhhcCccceEeCCCCCHHhHHHHHHHHh
Q 002800 220 I-LVTTCE-EN-V-INKMGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 220 i-iiTtR~-~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
| .|||-+ -+ + +..+....++++.+.+++|-.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 445543 22 2 1223446789999999999888777664
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.30 E-value=0.0013 Score=78.42 Aligned_cols=164 Identities=17% Similarity=0.224 Sum_probs=89.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAI 158 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i 158 (879)
+.+.+|.++.+++|.++|......+.....++.++|++|+||||+|+.++. .....|-. +..+ .+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccch
Confidence 356999999999999888742211122456789999999999999999997 33333311 2222 2222211110
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHh----HHHHHHhccCC---------------CCCcE
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNY----WQQLMYSLKSG---------------SEGSR 219 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~ 219 (879)
+... +. ....+.+.+.+. ....-+++||.++....+. .+.+...+... -...-
T Consensus 396 -~~~~-----g~-~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 -RTYI-----GS-MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred -hccC-----CC-CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 1010 00 111233333332 2234478899997653221 24455544321 12333
Q ss_pred EEEEccchhhhhh-cCccceEeCCCCCHHhHHHHHHHHh
Q 002800 220 ILVTTCEENVINK-MGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 220 iiiTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
+|.|+....+... .....++++.+++.+|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4555544332222 1234678999999999888877654
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=97.28 E-value=0.00015 Score=69.32 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=26.2
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccc-cccceEEE
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVK-THFSKRIW 144 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 144 (879)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999853333 34666665
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.28 E-value=0.0036 Score=75.21 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=97.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
-.++.|.++.+++|.+.+.-.-.. +-...+-+.++|++|+|||++|+.+++ .....| +.+.. .
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~--~- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRG--P- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEeh--H-
Confidence 346888888888887766421100 112334578999999999999999998 333333 23221 1
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc--------ch----HhHHHHHHhccC--CCCCcE
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR--------YF----NYWQQLMYSLKS--GSEGSR 219 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~gs~ 219 (879)
+++.... + .....+...+...-...+.+|++|+++.. +. ....++...+.. ...+.-
T Consensus 522 ---~l~~~~v-G-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ---EILSKWV-G-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ---HHhhccc-C-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111111 0 11122223333333466799999999642 00 112233444432 223445
Q ss_pred EEEEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh
Q 002800 220 ILVTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 220 iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP 285 (879)
||.||...+..... .-+..+.+...+.++-.++|..+..+.... ...+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~--~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA--EDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC--ccCC----HHHHHHHcCCCC
Confidence 66677665433221 235678999999999999997665433221 1112 345566676643
No 201
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=1.9e-05 Score=69.21 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=64.1
Q ss_pred CcccEEEcCCCCCccccccc---ccCcccccCCCCCEEecccCCCCcccCcccc-cCCCCcEEeccCcccccccchhhhc
Q 002800 493 TCLRSLDLSNQDNGFYNVIK---RVPRGIRKLLHLRYLNLSRNSKIAELPESLC-DLYNLETMELSWCISLKRLPQRMGQ 568 (879)
Q Consensus 493 ~~Lr~L~L~~~~~~~~~~l~---~lp~~i~~L~~Lr~L~L~~~~~i~~lP~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~ 568 (879)
+.+..|||++ | .+. +.+..+....+|...+|++|. ++.+|+.+. +.+-+.+|++.+| .+..+|.++..
T Consensus 27 kE~h~ldLss-----c-~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aa 98 (177)
T KOG4579|consen 27 KELHFLDLSS-----C-QLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAA 98 (177)
T ss_pred HHhhhccccc-----c-hhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhh
Confidence 4456667776 3 222 333445556666777777777 777776654 3446777777776 67777777777
Q ss_pred ccccceEecCCcccccCCccCCCCCCCCcCC
Q 002800 569 LINLWHLVNDGTSLSYMPKGIERLTCLRTLN 599 (879)
Q Consensus 569 L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 599 (879)
++.|+.|+++.|.+...|..+..|.+|-.|.
T Consensus 99 m~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 7777777777777777776666655555554
No 202
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.28 E-value=0.0033 Score=70.51 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=86.1
Q ss_pred CceeeehhhHHHHHHHHhc---C-CCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLC---E-SSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 157 (879)
+++.|.+..++.+.+.... . ...+-...+-|.++|++|+|||.+|+.+++ .....| +.++. ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~-----~~l~~--~~---- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL-----LRLDV--GK---- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE-----EEEEh--HH----
Confidence 4678877766666543211 0 000112445688999999999999999998 332222 22220 01
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc--------chH----hHHHHHHhccCCCCCcEEEEEcc
Q 002800 158 ILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR--------YFN----YWQQLMYSLKSGSEGSRILVTTC 225 (879)
Q Consensus 158 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~~----~~~~l~~~l~~~~~gs~iiiTtR 225 (879)
+..... + .....+.+.+...-...+++|++|+++.. +.. ....+...+.....+.-||.||.
T Consensus 295 l~~~~v-----G-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 295 LFGGIV-----G-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred hccccc-----C-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 111100 0 11122223333223457899999999742 001 11122333333334445666776
Q ss_pred chhhhh-hc----CccceEeCCCCCHHhHHHHHHHHhccC
Q 002800 226 EENVIN-KM----GNTRMISLGTLSEEASWSLFCLVAFYW 260 (879)
Q Consensus 226 ~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 260 (879)
+.+... .+ .-+..+.+..-+.++-.++|..+..+.
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 643211 11 235678899999999999998876553
No 203
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.26 E-value=0.0013 Score=62.76 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=68.9
Q ss_pred eeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHH
Q 002800 84 VIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILE 160 (879)
Q Consensus 84 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~ 160 (879)
+||.+..+.++.+.+..-.. .+ .-|.|+|..|+||+.+|+.+++... .. ..-||.+. .+...+-.++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~--r~--~~pfi~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSP--RK--NGPFISVNCAALPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCST--TT--TS-EEEEETTTS-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhh--cc--cCCeEEEehhhhhcchhhhhhhc
Confidence 57888889998888876543 23 3456999999999999999998321 11 12235554 333333223322
Q ss_pred HhccCCCCCc-hhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCC------C-----CCcEEEEEccc
Q 002800 161 SLKDGVSSDL-VEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSG------S-----EGSRILVTTCE 226 (879)
Q Consensus 161 ~l~~~~~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iiiTtR~ 226 (879)
... +...+. .... -.+. ....=-|+||+|+....+.-..+...+... + ...|||.||..
T Consensus 73 ~~~-~~~~~~~~~~~---G~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEK-GAFTGARSDKK---GLLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCS-SSSTTTSSEBE---HHHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccc-ccccccccccC---Ccee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 211 110010 0000 1111 234457889999997666666676665432 1 25678888874
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.25 E-value=0.0014 Score=66.42 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=56.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
...+.++|.+|+|||+||..+++. ....-..++++++ .++...+-.... .. ....+ .+.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~----~~l~~~l~~~~~-~~---~~~~~----~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV----ADIMSAMKDTFS-NS---ETSEE----QLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH----HHHHHHHHHHHh-hc---cccHH----HHHHHhc-cC
Confidence 346789999999999999999984 3333334555543 344444333322 10 11112 2223344 34
Q ss_pred eEEEeecccccchHhHHH--HHHhccC-CCCCcEEEEEccc
Q 002800 189 FLLVLDDVRSRYFNYWQQ--LMYSLKS-GSEGSRILVTTCE 226 (879)
Q Consensus 189 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iiiTtR~ 226 (879)
=+||+||+.......|+. +...+.. ....-.+||||-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 488889997765556664 2222221 1223457777753
No 205
>PRK06526 transposase; Provisional
Probab=97.25 E-value=0.00043 Score=70.84 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=51.2
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
.-+.|+|++|+|||+||..+.+. ....-..+.|+. ..++..++..... . ......+.+. .+.-
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~--a~~~g~~v~f~t----~~~l~~~l~~~~~-~--------~~~~~~l~~l--~~~d 161 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR--ACQAGHRVLFAT----AAQWVARLAAAHH-A--------GRLQAELVKL--GRYP 161 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH--HHHCCCchhhhh----HHHHHHHHHHHHh-c--------CcHHHHHHHh--ccCC
Confidence 35789999999999999999873 222211233332 3344444433221 0 0111223322 2345
Q ss_pred EEEeecccccchHhH-H-HHHHhccC-CCCCcEEEEEccc
Q 002800 190 LLVLDDVRSRYFNYW-Q-QLMYSLKS-GSEGSRILVTTCE 226 (879)
Q Consensus 190 LlVlDdv~~~~~~~~-~-~l~~~l~~-~~~gs~iiiTtR~ 226 (879)
+||+||+.....+.| . .+...+.. ...+ .+|+||..
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~ 200 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNK 200 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCC
Confidence 899999975422222 2 23333322 1234 48888875
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.24 E-value=0.00029 Score=68.06 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=49.8
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
.-+.|+|.+|+|||.||..+.+. ...+=..+.|+.. .+++..+-.... ....+.. + +.+.+ -=
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~----~~L~~~l~~~~~------~~~~~~~---~-~~l~~-~d 110 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA----SDLLDELKQSRS------DGSYEEL---L-KRLKR-VD 110 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH----HHHHHHHHCCHC------CTTHCHH---H-HHHHT-SS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec----Cceecccccccc------ccchhhh---c-Ccccc-cc
Confidence 45889999999999999999983 3222223556653 333333322111 1112222 2 22332 34
Q ss_pred EEEeecccccchHhHHH--HHHhccC-CCCCcEEEEEccc
Q 002800 190 LLVLDDVRSRYFNYWQQ--LMYSLKS-GSEGSRILVTTCE 226 (879)
Q Consensus 190 LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iiiTtR~ 226 (879)
||||||+.......|.. +...+.. ...+ .+||||..
T Consensus 111 lLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 111 LLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp CEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred EecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 77899997754445543 1111111 1123 57888864
No 207
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.0012 Score=73.17 Aligned_cols=187 Identities=14% Similarity=0.135 Sum_probs=114.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccc--cccceEEEEEeecchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVK--THFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
+++||.+.-.+.|...+.... -..--...|+-|+||||+|+-++...-.. ...+. +..-...++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP-------C~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP-------CGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc-------chhhhhhHhhh
Confidence 468999999999999998764 23334578999999999999988631111 11111 11111111111
Q ss_pred HH-------hccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhh
Q 002800 160 ES-------LKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVI 230 (879)
Q Consensus 160 ~~-------l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~ 230 (879)
.. +........++..++.+.+.-.= .++-=+.|+|.|+-.....|..+...+.........|..|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 00011122233333333332221 2344488999999888889999999888777777777766664 333
Q ss_pred hh-cCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh
Q 002800 231 NK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 231 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP 285 (879)
.. ....+.|.++.++.++-...+...+-..+.. - . .+....|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~-~-e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN-I-E---EDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc-c-C---HHHHHHHHHHcCCCh
Confidence 22 2346789999999999999998887655543 1 1 233556777777754
No 208
>PRK09183 transposase/IS protein; Provisional
Probab=97.22 E-value=0.00083 Score=69.25 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=51.5
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
..+.|+|++|+|||+||..+++. ....-..+.++. ..++...+..... .. .+...+.+. -.+.-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~--a~~~G~~v~~~~----~~~l~~~l~~a~~-~~--------~~~~~~~~~-~~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE--AVRAGIKVRFTT----AADLLLQLSTAQR-QG--------RYKTTLQRG-VMAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe----HHHHHHHHHHHHH-CC--------cHHHHHHHH-hcCCC
Confidence 45779999999999999999763 211112233443 2333333322222 10 111222222 23456
Q ss_pred EEEeecccccchHhHH--HHHHhccCC-CCCcEEEEEccc
Q 002800 190 LLVLDDVRSRYFNYWQ--QLMYSLKSG-SEGSRILVTTCE 226 (879)
Q Consensus 190 LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iiiTtR~ 226 (879)
++|+||+.-.....+. .+...+... ..++ +||||..
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 9999999753222222 233333221 2344 8888864
No 209
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0063 Score=64.88 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=67.4
Q ss_pred CCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhh-cCccceEeCCCCCHHhHHHHHHHHhccCCCC
Q 002800 186 GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINK-MGNTRMISLGTLSEEASWSLFCLVAFYWRRS 263 (879)
Q Consensus 186 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 263 (879)
+++=++|+|+++....+.+..+...+....+++.+|++|.+. .+... ......+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 344588899999988899999999999888888777766663 33333 2235789999999999999887641 11
Q ss_pred chhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 264 DEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 264 ~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
. ...++..++|.|..+..+.
T Consensus 207 -~--------~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 -D--------ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -h--------HHHHHHHcCCCHHHHHHHH
Confidence 1 1234778899997555443
No 210
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.21 E-value=0.00063 Score=67.96 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=28.3
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEe
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSA 147 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 147 (879)
.++|+|..|+||||+++.+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 467999999999999999988 46678877666543
No 211
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.20 E-value=4.9e-05 Score=74.46 Aligned_cols=258 Identities=19% Similarity=0.176 Sum_probs=132.6
Q ss_pred hccCCcccEEEcCCCCCccccccc-----ccCcccccCCCCCEEecccCCCCc----ccCc-------ccccCCCCcEEe
Q 002800 489 FDNLTCLRSLDLSNQDNGFYNVIK-----RVPRGIRKLLHLRYLNLSRNSKIA----ELPE-------SLCDLYNLETME 552 (879)
Q Consensus 489 ~~~l~~Lr~L~L~~~~~~~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~~i~----~lP~-------~i~~L~~L~~L~ 552 (879)
+..+..+..++|++ |.+. .+...|.+-.+|+..+++.-. .. ++|+ .+-++++||+.+
T Consensus 26 l~~~d~~~evdLSG------NtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 26 LEMMDELVEVDLSG------NTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HHhhcceeEEeccC------CcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 44577888889998 4443 244556667778888877543 22 2332 344667777777
Q ss_pred ccCcccccccchh----hhcccccceEecCCcccccCCccCCCCCCCCcCCceeecccCCCCcccCcc-cccccccCCCe
Q 002800 553 LSWCISLKRLPQR----MGQLINLWHLVNDGTSLSYMPKGIERLTCLRTLNEFIVSVGSDDDKACKLE-CLKSLNHLRGS 627 (879)
Q Consensus 553 L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~-~L~~L~~L~~~ 627 (879)
|+.|-.-...|.. |.+-+.|.||.+++|.+..+- +..+. .|.+|...+
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a-------------------------G~rigkal~~la~nK-- 151 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA-------------------------GGRIGKALFHLAYNK-- 151 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc-------------------------hhHHHHHHHHHHHHh--
Confidence 7766433344432 344456666666666433221 11111 111111111
Q ss_pred eEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcch-----
Q 002800 628 LKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIF----- 702 (879)
Q Consensus 628 L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~----- 702 (879)
.....+.|++....-|.+.. . .....-..+..+.+|+.+++..|.+. |..
T Consensus 152 -----------------Kaa~kp~Le~vicgrNRlen-g----s~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~ 206 (388)
T COG5238 152 -----------------KAADKPKLEVVICGRNRLEN-G----SKELSAALLESHENLKEVKIQQNGIR---PEGVTMLA 206 (388)
T ss_pred -----------------hhccCCCceEEEeccchhcc-C----cHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHH
Confidence 12234566666666554311 0 01111123445567888888877653 331
Q ss_pred ---hhcccCCcEEeEcCCCCCCC----CC-CCCCCCccceeeccccccceEeccc-ccCCchhhhccccccccccccCCC
Q 002800 703 ---IMSLAKLRSMSLDRCINLEQ----LP-RLGELPSLESLTVRNMRRLEKVGNE-FLGIDESRLLRKDEGKVLGTDRSR 773 (879)
Q Consensus 703 ---~~~l~~L~~L~L~~~~~~~~----lp-~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~ 773 (879)
...+.+|+.|+|..|..... +. .+...+.|+.|.+..|- +..-|.. +... +
T Consensus 207 ~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~----f--------------- 266 (388)
T COG5238 207 FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRR----F--------------- 266 (388)
T ss_pred HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHH----h---------------
Confidence 12678888888888754321 11 14456778888888874 1111110 0000 0
Q ss_pred CCCcccCCCCCCCcCCCccceeeeccCccccccccccccCCCCCCCCCCccCeeeccCCCCCcCC
Q 002800 774 SSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLETL 838 (879)
Q Consensus 774 ~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~C~~L~~l 838 (879)
.-..+|+|..|.+.++.-=..+...+.....+ ..++|-|..|.+.+ +.+...
T Consensus 267 -----------~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e-~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 267 -----------NEKFVPNLMPLPGDYNERRGGIILDISLNEFE-QDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred -----------hhhcCCCccccccchhhhcCceeeeechhhhh-hcccHHHHHHHHcc-CcchhH
Confidence 01256888888888763211111111111111 24788899998887 455544
No 212
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.19 E-value=0.0018 Score=68.27 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=68.5
Q ss_pred eehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccC
Q 002800 86 VRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDG 165 (879)
Q Consensus 86 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~ 165 (879)
+|........+++..-.. +...+-+.|+|..|+|||.||.++++. ....-..+.|+++ .+++.++...+. .
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~----~~l~~~lk~~~~-~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF----PEFIRELKNSIS-D 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH----HHHHHHHHHHHh-c
Confidence 344444444555543221 113456889999999999999999994 3333233556654 345555554443 1
Q ss_pred CCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHH--HHHhc-cCC-CCCcEEEEEcc
Q 002800 166 VSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQ--LMYSL-KSG-SEGSRILVTTC 225 (879)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iiiTtR 225 (879)
. ... +.+.. + .+-=||||||+.-+....|.. +...+ ... ..+-.+|+||-
T Consensus 206 ~-----~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 G-----SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred C-----cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 112 22222 2 245589999998765667754 44443 221 24557888885
No 213
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.15 E-value=0.0019 Score=78.20 Aligned_cols=136 Identities=14% Similarity=0.166 Sum_probs=78.8
Q ss_pred CceeeehhhHHHHHHHHhcCCC---CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS---EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~ 157 (879)
..++|.++.++.+...+..... ........+.++|+.|+|||+||+.+++ ..-..-...+-+..+ +....-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc---
Confidence 5799999999999988864321 0112234567899999999999999987 221111223333333 211111
Q ss_pred HHHHhccC-CCCCchhHHHHHHHHHHHhhCCe-eEEEeecccccchHhHHHHHHhccCC-----------CCCcEEEEEc
Q 002800 158 ILESLKDG-VSSDLVEIDTVLQQISHYIQGNR-FLLVLDDVRSRYFNYWQQLMYSLKSG-----------SEGSRILVTT 224 (879)
Q Consensus 158 i~~~l~~~-~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTt 224 (879)
+..-++.. ...+...... +.+.++.++ -+++||+++..+.+.++.+...+..+ -..+-||+||
T Consensus 584 ~~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 584 VSKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred HHHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 11111100 0111122222 334444455 48889999999888999998887754 1344566676
Q ss_pred cc
Q 002800 225 CE 226 (879)
Q Consensus 225 R~ 226 (879)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 54
No 214
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.15 E-value=0.0026 Score=72.77 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=90.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccc--ccccc-eEEEEEee-----cchHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV--KTHFS-KRIWVSAS-----YPEIR 153 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~-~~~wv~~s-----~~~~~ 153 (879)
.+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++...- ...|. ..-|+.+. ++.+.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 36999999999998877543 2334679999999999999999862110 11232 12234333 12222
Q ss_pred HHHHHHHHhccC----C-CCCchhHHH-HHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCC-------------
Q 002800 154 IARAILESLKDG----V-SSDLVEIDT-VLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSG------------- 214 (879)
Q Consensus 154 ~~~~i~~~l~~~----~-~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------------- 214 (879)
+...++...... . ........+ ....+ -+...-.|++|++...+......+...+...
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l---~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAV---TRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchh---hccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 222221111000 0 000000000 00001 0234468999999998777777777655321
Q ss_pred ---------------CCCcEEEE-Eccchh-hhhhc-CccceEeCCCCCHHhHHHHHHHHhcc
Q 002800 215 ---------------SEGSRILV-TTCEEN-VINKM-GNTRMISLGTLSEEASWSLFCLVAFY 259 (879)
Q Consensus 215 ---------------~~gs~iii-TtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~ 259 (879)
....++|. ||++.+ +.... .....+.+.+|+.+|-.+++.+.+-.
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 01235554 455433 11111 12356788999999988888876643
No 215
>PRK04296 thymidine kinase; Provisional
Probab=97.15 E-value=0.0011 Score=64.92 Aligned_cols=114 Identities=12% Similarity=0.011 Sum_probs=64.8
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC-CCchhHHHHHHHHHHHhhCCe
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS-SDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~ 188 (879)
.++.|+|+.|.||||+|..++. +...+-..++.+.-+++.+.....++.+++.... ......+++...+.+ ..++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 3678999999999999999987 4433433344443223333333445555541111 012233444455544 23344
Q ss_pred eEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh
Q 002800 189 FLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN 228 (879)
Q Consensus 189 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 228 (879)
-+||+|.+.--+.++..++...+. ..|..||+|.++.+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 589999996643333334444332 45788999998744
No 216
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.14 E-value=0.0025 Score=76.71 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=83.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~ 159 (879)
.+++|.++.+++|.+.+......+....+++.++|++|+|||++|+.+++ .....|-. +..+ .+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~~---i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFVR---FSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeEE---EeCCCcccHHHHcC---
Confidence 45889999999988866432110112345789999999999999999998 34333311 1111 22222111
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchH----hHHHHHHhccC--------CC-------CCcEE
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFN----YWQQLMYSLKS--------GS-------EGSRI 220 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~--------~~-------~gs~i 220 (879)
. . ..........+.+.+.... .++-+++||.++..... .-..+...+.. .. .+.-+
T Consensus 392 -~-~--~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 392 -H-R--RTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred -C-C--CceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 0 0000011122333333332 23347899999764221 11223333321 10 12333
Q ss_pred EEEccchh-hhhh-cCccceEeCCCCCHHhHHHHHHHHh
Q 002800 221 LVTTCEEN-VINK-MGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 221 iiTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
|.||.... +... .....++++.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 44554322 1111 1234578999999988888776543
No 217
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0053 Score=67.48 Aligned_cols=155 Identities=16% Similarity=0.254 Sum_probs=89.0
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
.=|.+||++|+|||-||++|+| +.+-.| +++- .. +++. ..++ +...++...+.+.-..-++
T Consensus 546 sGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVK-GP-ELlN---kYVG-------ESErAVR~vFqRAR~saPC 606 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVK-GP-ELLN---KYVG-------ESERAVRQVFQRARASAPC 606 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhh--hccCce-----Eeec-CH-HHHH---HHhh-------hHHHHHHHHHHHhhcCCCe
Confidence 3467999999999999999999 555555 3332 00 0000 1111 1122233333333346789
Q ss_pred EEEeeccccc-----------chHhHHHHHHhccC--CCCCcEEEEEccchhhhhhc--C---ccceEeCCCCCHHhHHH
Q 002800 190 LLVLDDVRSR-----------YFNYWQQLMYSLKS--GSEGSRILVTTCEENVINKM--G---NTRMISLGTLSEEASWS 251 (879)
Q Consensus 190 LlVlDdv~~~-----------~~~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~--~---~~~~~~l~~L~~~e~~~ 251 (879)
+|.||.++.. ......+++..+.. ...|.-||-.|-.+++.... . -+....|+.-+.+|-.+
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 9999999652 11223334444443 24566677777666654332 1 25678889899999999
Q ss_pred HHHHHhccCCCCchhhHHHHHHHHHHHhhcCCCh
Q 002800 252 LFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLP 285 (879)
Q Consensus 252 Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glP 285 (879)
+++...-....+....-+++++|+. .+|.|.-
T Consensus 687 ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 687 ILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9998876433322333345444443 3555543
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.14 E-value=0.0004 Score=73.34 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=42.4
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcc
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
+++|.++.++++++++.......+...++++++|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997754322345689999999999999999999884
No 219
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0013 Score=67.99 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=27.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccc-cceEEEEEe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTH-FSKRIWVSA 147 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 147 (879)
...+.++|..|+|||+||.++++ .+..+ -..++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 45688999999999999999998 44333 334566653
No 220
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.09 E-value=0.0085 Score=72.04 Aligned_cols=181 Identities=12% Similarity=0.060 Sum_probs=95.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCC-------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESS-------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
-+++.|.++.++++.+.+...-. -+-...+-+.++|++|+|||+||+.+++ .....| +.++. .+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~-----i~i~~--~~ 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF-----ISING--PE 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE-----EEEec--HH
Confidence 34688999999998887643210 0112345678999999999999999998 333322 33321 01
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccc-----------hHhHHHHHHhccCC-CCCcEEE
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRY-----------FNYWQQLMYSLKSG-SEGSRIL 221 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~ii 221 (879)
+ ..... ......+...+.......+.+|++|+++... ......+...+... ..+..++
T Consensus 248 i----~~~~~------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 I----MSKYY------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred H----hcccc------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 11111 1112223333344445667899999985421 11223344444332 2233444
Q ss_pred E-Eccchh-hhhhcC----ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh
Q 002800 222 V-TTCEEN-VINKMG----NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL 286 (879)
Q Consensus 222 i-TtR~~~-v~~~~~----~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL 286 (879)
| ||.... +...+. -...+.+...+.++-.+++..+.-..... .. .....+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~--~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA--ED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc--cc----cCHHHHHHhCCCCCH
Confidence 4 454432 211111 23567888888898888888554322111 01 114567777777643
No 221
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.08 E-value=0.018 Score=60.71 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcc
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
...+.++|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999983
No 222
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.06 E-value=0.0013 Score=60.85 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=66.2
Q ss_pred eeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccc-ccccceEEEEEeecchHHHHHHHHHHhc
Q 002800 85 IVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV-KTHFSKRIWVSASYPEIRIARAILESLK 163 (879)
Q Consensus 85 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~i~~~l~ 163 (879)
||+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...| +.+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~-----~~~~--------------- 56 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPF-----IVID--------------- 56 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-C-----CCCC---------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCe-----EEec---------------
Confidence 5777778888877765432 3345679999999999999999873221 1112 1111
Q ss_pred cCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCC-CCCcEEEEEccc
Q 002800 164 DGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSG-SEGSRILVTTCE 226 (879)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTtR~ 226 (879)
....+ .+.+.+ .+.--|+++|++..+.+....+...+... ....|+|.||+.
T Consensus 57 ----~~~~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 57 ----CASLP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ----HHCTC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ----hhhCc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00000 111111 25556889999998777777888777643 677899999975
No 223
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.011 Score=65.14 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=103.7
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCC------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHH
Q 002800 80 DSSQVIVRDGEKNRLLNLLLCESSE------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIR 153 (879)
Q Consensus 80 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 153 (879)
.-.++=|.+..+.++.+++..-... +-...+=|.++|++|+|||.||++++. +..-.| +.++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isA---- 256 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISA---- 256 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecc----
Confidence 3457888999888888877542210 222445577999999999999999998 343333 33331
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc------chHhHH-----HHHHhccC---C---CC
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR------YFNYWQ-----QLMYSLKS---G---SE 216 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~~-----~l~~~l~~---~---~~ 216 (879)
.+|+..+. ....+.+.+.+.+.-+.-++++++|+++-. .+.+++ ++...+.. . +.
T Consensus 257 --peivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 257 --PEIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred --hhhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 12333332 223444555556666678999999999642 111111 12222221 1 22
Q ss_pred CcEEEE-Eccchhhhhh---cC-ccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCC----hhH
Q 002800 217 GSRILV-TTCEENVINK---MG-NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNL----PLA 287 (879)
Q Consensus 217 gs~iii-TtR~~~v~~~---~~-~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~gl----PLa 287 (879)
+.-||- |+|-..+-.. .+ -++.|.++--+...-.+++...+-+-..+ . .-+ .++|++..-|. -.|
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g-~~d----~~qlA~lTPGfVGADL~A 402 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-G-DFD----FKQLAKLTPGFVGADLMA 402 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-C-CcC----HHHHHhcCCCccchhHHH
Confidence 322333 4443332222 22 25667777777777667776665544443 1 112 33455555443 345
Q ss_pred HHHHhhhcc
Q 002800 288 VKVIGSHLR 296 (879)
Q Consensus 288 i~~~~~~l~ 296 (879)
+...|+..+
T Consensus 403 L~~~Aa~vA 411 (802)
T KOG0733|consen 403 LCREAAFVA 411 (802)
T ss_pred HHHHHHHHH
Confidence 555555543
No 224
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.0015 Score=62.84 Aligned_cols=66 Identities=24% Similarity=0.377 Sum_probs=39.5
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccc-cccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVK-THFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
.|.|+|++|+||||||+.+.....+. -+.|...|-. .....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP--------------------NWQERDDDDMIADISNFLLKHD- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc--------------------ccccCCHHHHHHHHHHHHhCCC-
Confidence 47899999999999999998631111 1233333321 1112234455566666666666
Q ss_pred EEEeecccc
Q 002800 190 LLVLDDVRS 198 (879)
Q Consensus 190 LlVlDdv~~ 198 (879)
.|+|+...
T Consensus 61 -wIidg~~~ 68 (171)
T PRK07261 61 -WIIDGNYS 68 (171)
T ss_pred -EEEcCcch
Confidence 57788744
No 225
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0052 Score=66.49 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=88.2
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-------------------ccceEE
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-------------------HFSKRI 143 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 143 (879)
+++|-+....++..+...... ....+.++|++|+||||+|..+++...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467888888888888885431 233588999999999999999997311111 112333
Q ss_pred EEEee--cc---hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCc
Q 002800 144 WVSAS--YP---EIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGS 218 (879)
Q Consensus 144 wv~~s--~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 218 (879)
.+..+ .. ..+..+++.+... .... .++.=++++|+++....+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~-~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLS-ESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhc-cCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 34333 11 1223333333322 0000 3566789999999876666677777777778888
Q ss_pred EEEEEccch-hhhhhc-CccceEeCCCCCHHh
Q 002800 219 RILVTTCEE-NVINKM-GNTRMISLGTLSEEA 248 (879)
Q Consensus 219 ~iiiTtR~~-~v~~~~-~~~~~~~l~~L~~~e 248 (879)
++|++|... .+.... .....+++.+.+..+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 988888743 232222 234567777744433
No 226
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0034 Score=74.24 Aligned_cols=122 Identities=17% Similarity=0.241 Sum_probs=71.9
Q ss_pred CceeeehhhHHHHHHHHhcCCC---CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS---EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~ 157 (879)
..++|.++.++.|.+.+..... ........+.++|++|+|||++|+.++.. ... ..+.+..+ +.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccccc---
Confidence 4689999999999998874311 01223457889999999999999999873 322 22334444 221111
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHHHhhCC-eeEEEeecccccchHhHHHHHHhccCC
Q 002800 158 ILESLKDGVSSDLVEIDTVLQQISHYIQGN-RFLLVLDDVRSRYFNYWQQLMYSLKSG 214 (879)
Q Consensus 158 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~ 214 (879)
...+. +.+.+....+ ....+.+.+..+ .-+|+||+++....+.+..+...+..+
T Consensus 530 -~~~Li-G~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 -VSRLI-GAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred -HHHHc-CCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 12222 1111111000 011222333333 459999999998888888888877643
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.01 E-value=0.0011 Score=70.26 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=54.0
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
.-+.++|..|+|||+||..+++. +...-..++|+++ .+++..+..... .. ..+.... + +.+.+ -=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~----~~l~~~l~~~~~-~~---~~~~~~~---~-~~l~~-~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA----DELIEILREIRF-NN---DKELEEV---Y-DLLIN-CD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH----HHHHHHHHHHHh-cc---chhHHHH---H-HHhcc-CC
Confidence 56889999999999999999984 3333234555554 333333322211 01 1111111 1 22222 24
Q ss_pred EEEeecccccchHhHHH--HHHhccCC-CCCcEEEEEccc
Q 002800 190 LLVLDDVRSRYFNYWQQ--LMYSLKSG-SEGSRILVTTCE 226 (879)
Q Consensus 190 LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iiiTtR~ 226 (879)
||||||+.......|.. +...+... ..+-.+||||-.
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996653333332 33333221 234568888864
No 228
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0088 Score=66.73 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=89.2
Q ss_pred ccCCCceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-c
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-Y 149 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~ 149 (879)
.++-+++=|-++-+.+|.+.+.-+-.. +-...+=|..+|+||+|||++|+++++ ...-.| +.+. .
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp 502 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP 502 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH
Confidence 334456677888777777666543210 123566678999999999999999999 455555 3332 0
Q ss_pred chHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccc-----------hHhHHHHHHhccCCCCCc
Q 002800 150 PEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRY-----------FNYWQQLMYSLKSGSEGS 218 (879)
Q Consensus 150 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~gs 218 (879)
. +..... .+....+.+.+++.=+--+.++.||.++... .....++...+.......
T Consensus 503 E-------L~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 503 E-------LFSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred H-------HHHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 0 000000 0111222222233223456888888886521 112233334444332222
Q ss_pred EE--EEEccchhhhh-h-cC---ccceEeCCCCCHHhHHHHHHHHhccCCC
Q 002800 219 RI--LVTTCEENVIN-K-MG---NTRMISLGTLSEEASWSLFCLVAFYWRR 262 (879)
Q Consensus 219 ~i--iiTtR~~~v~~-~-~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~ 262 (879)
.| |-.|-.++... . +. .+..+.+++-+.+-..++|+.++-+-..
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF 620 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC
Confidence 33 33332233222 1 22 3677888888888888999988765544
No 229
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0081 Score=60.94 Aligned_cols=81 Identities=16% Similarity=0.294 Sum_probs=47.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhccccc--ccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAV--KTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
-|+|.++||||.|||+|.+++++...+ .+.|....-+.++ -..++...... ...-+..+.+.|.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin--shsLFSKWFsE-------SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN--SHSLFSKWFSE-------SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe--hhHHHHHHHhh-------hhhHHHHHHHHHHHHHhC
Confidence 478899999999999999999985333 3445555445443 11111111111 112344455556666655
Q ss_pred Ce--eEEEeecccc
Q 002800 187 NR--FLLVLDDVRS 198 (879)
Q Consensus 187 k~--~LlVlDdv~~ 198 (879)
+. +++.+|.|++
T Consensus 248 ~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 248 RGNLVFVLIDEVES 261 (423)
T ss_pred CCcEEEEEeHHHHH
Confidence 54 4556699965
No 230
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.99 E-value=2.6e-05 Score=86.36 Aligned_cols=130 Identities=23% Similarity=0.280 Sum_probs=99.0
Q ss_pred CCCeeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcc-ccc
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRG-IRK 520 (879)
Q Consensus 442 ~~~~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~ 520 (879)
...+...+++.|.+.....++.-++.|++|+++.|. +.. -+.+..+..|+.|||++ |.+..+|.- ...
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk---~~~--v~~Lr~l~~LkhLDlsy------N~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK---FTK--VDNLRRLPKLKHLDLSY------NCLRHVPQLSMVG 231 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh---hhh--hHHHHhccccccccccc------chhccccccchhh
Confidence 445666677777666555667778999999999883 322 23688999999999999 888888842 233
Q ss_pred CCCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccc--hhhhcccccceEecCCcccccCC
Q 002800 521 LLHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLP--QRMGQLINLWHLVNDGTSLSYMP 586 (879)
Q Consensus 521 L~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp 586 (879)
+ +|..|+|++|. ++.+- .|.+|.+|+.||+++| .+...- .-++.|..|+.|+|.||++..-|
T Consensus 232 c-~L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred h-hheeeeecccH-HHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 4 39999999998 88774 4889999999999998 444322 23678899999999999876555
No 231
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00024 Score=82.96 Aligned_cols=83 Identities=24% Similarity=0.265 Sum_probs=45.4
Q ss_pred CCCCEEecccCCCCcc-cCcccc-cCCCCcEEeccCcccc-cccchhhhcccccceEecCCcccccCCccCCCCCCCCcC
Q 002800 522 LHLRYLNLSRNSKIAE-LPESLC-DLYNLETMELSWCISL-KRLPQRMGQLINLWHLVNDGTSLSYMPKGIERLTCLRTL 598 (879)
Q Consensus 522 ~~Lr~L~L~~~~~i~~-lP~~i~-~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 598 (879)
.+|++|+++|...+.. =|..++ .|++|++|.+.+-... .++-.-..++++|+.||+++++++.+ .++++|++||.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3566666665432211 112222 4667777777653111 11223344667777777777776666 567777777777
Q ss_pred Cceeecc
Q 002800 599 NEFIVSV 605 (879)
Q Consensus 599 ~~~~~~~ 605 (879)
.+.+...
T Consensus 201 ~mrnLe~ 207 (699)
T KOG3665|consen 201 SMRNLEF 207 (699)
T ss_pred hccCCCC
Confidence 6554433
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0031 Score=64.70 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=47.4
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeE
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFL 190 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 190 (879)
-+.++|.+|+|||.||.++.+. +...--.+.+++ ..++..++..... . ......+.+.+. +-=|
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~----~~el~~~Lk~~~~-~--------~~~~~~l~~~l~-~~dl 170 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT----APDLLSKLKAAFD-E--------GRLEEKLLRELK-KVDL 170 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE----HHHHHHHHHHHHh-c--------CchHHHHHHHhh-cCCE
Confidence 4789999999999999999994 443322355555 3566666666555 1 111122222111 2238
Q ss_pred EEeecccccchHhHH
Q 002800 191 LVLDDVRSRYFNYWQ 205 (879)
Q Consensus 191 lVlDdv~~~~~~~~~ 205 (879)
|||||+-......|.
T Consensus 171 LIiDDlG~~~~~~~~ 185 (254)
T COG1484 171 LIIDDIGYEPFSQEE 185 (254)
T ss_pred EEEecccCccCCHHH
Confidence 999999765444444
No 233
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.97 E-value=0.0035 Score=63.59 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=31.1
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS 148 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 148 (879)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC
Confidence 5678999999999999999999873 33334568888776
No 234
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.97 E-value=0.0011 Score=63.39 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=53.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccc-cccceEEEEEee-cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVK-THFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
..++.+.|+.|+|||.||+.+++ .+. +.....+-+..+ +...+-...++..+. +....... ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~-~~~~~~v~------------~~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLL-GSPPGYVG------------AE 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHH-HHTTCHHH------------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhh-hcccceee------------cc
Confidence 45788999999999999999998 343 344445555555 333111111111111 00000000 00
Q ss_pred CeeEEEeecccccch-----------HhHHHHHHhccC
Q 002800 187 NRFLLVLDDVRSRYF-----------NYWQQLMYSLKS 213 (879)
Q Consensus 187 k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 213 (879)
..-+|+||+++.... ..|..+...+..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 111999999999888 889998888754
No 235
>PHA00729 NTP-binding motif containing protein
Probab=96.96 E-value=0.0043 Score=61.32 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...|.|+|.+|+||||||..+.+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999988
No 236
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.037 Score=60.95 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=74.8
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN 187 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 187 (879)
++.|.|+=++||||+++.+... ..+. .+++... .+..++ .+. ........ ..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~-----------------~~~~~~~~-~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDL-----------------LRAYIELK-ERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHH-----------------HHHHHHhh-ccC
Confidence 8999999999999999777652 2222 3444321 111111 111 11111111 127
Q ss_pred eeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhh-----hc-CccceEeCCCCCHHhHHHH
Q 002800 188 RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVIN-----KM-GNTRMISLGTLSEEASWSL 252 (879)
Q Consensus 188 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~-----~~-~~~~~~~l~~L~~~e~~~L 252 (879)
+..++||.|... ..|+.....+.+.++. +|++|+-+..... .. +....+++-||+-.|-..+
T Consensus 95 ~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 95 KSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 789999999985 6899988888887777 8999988854432 22 3467889999999998654
No 237
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.94 E-value=0.0035 Score=66.62 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=62.9
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc-cce-EEEEEee---cchHHHHHHHHHHhcc
Q 002800 90 EKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-FSK-RIWVSAS---YPEIRIARAILESLKD 164 (879)
Q Consensus 90 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~-~~wv~~s---~~~~~~~~~i~~~l~~ 164 (879)
-..++++.+..-. .+. .+.|+|.+|+|||||++.+++. +... -+. ++|+.+. ..+.++.+.+...+.
T Consensus 119 ~~~RvID~l~PiG----kGQ-R~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv- 190 (380)
T PRK12608 119 LSMRVVDLVAPIG----KGQ-RGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY- 190 (380)
T ss_pred hhHhhhhheeecC----CCc-eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE-
Confidence 4456777777542 133 4579999999999999999883 3332 233 4676666 677888888877766
Q ss_pred CCCCCchh-----HHHHHHHHHHHh--hCCeeEEEeecccc
Q 002800 165 GVSSDLVE-----IDTVLQQISHYI--QGNRFLLVLDDVRS 198 (879)
Q Consensus 165 ~~~~~~~~-----~~~~~~~l~~~l--~~k~~LlVlDdv~~ 198 (879)
....+... .......+.+++ ++++.+||+|++..
T Consensus 191 ast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 191 ASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 22211111 111111222222 48899999999954
No 238
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.89 E-value=0.00021 Score=62.85 Aligned_cols=89 Identities=25% Similarity=0.339 Sum_probs=48.2
Q ss_pred ccCCcccEEEcCCCCCcccccccccCcccccC-CCCCEEecccCCCCcccCcccccCCCCcEEeccCcccccccchhhhc
Q 002800 490 DNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKL-LHLRYLNLSRNSKIAELPESLCDLYNLETMELSWCISLKRLPQRMGQ 568 (879)
Q Consensus 490 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L-~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 568 (879)
.+...|...+|++ |.++++|..+... +-+..|+|.+|. +.++|..+..++.|+.|+++.| .+...|..|..
T Consensus 50 ~~~~el~~i~ls~------N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~ 121 (177)
T KOG4579|consen 50 SKGYELTKISLSD------NGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAP 121 (177)
T ss_pred hCCceEEEEeccc------chhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHH
Confidence 3444455555555 5555555544332 245555555555 5555555555555666666555 45555555555
Q ss_pred ccccceEecCCcccccCC
Q 002800 569 LINLWHLVNDGTSLSYMP 586 (879)
Q Consensus 569 L~~L~~L~l~~~~l~~lp 586 (879)
|.+|-.|+..++.+..+|
T Consensus 122 L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 122 LIKLDMLDSPENARAEID 139 (177)
T ss_pred HHhHHHhcCCCCccccCc
Confidence 666666655555444444
No 239
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.013 Score=62.60 Aligned_cols=104 Identities=8% Similarity=0.104 Sum_probs=55.1
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cc--hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHh
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YP--EIRIARAILESLKDGVSSDLVEIDTVLQQISHYI 184 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 184 (879)
..++|+|+|++|+||||++..++.. ...+=..+..+... +. ..+-++..++.++ -......+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lg-ipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcC-CcEEecCCHHHHHHHHHHHH
Confidence 4579999999999999999999873 32221234455554 32 2222233333333 11111234455555554432
Q ss_pred hC-CeeEEEeeccccc--chHhHHHHHHhccCC
Q 002800 185 QG-NRFLLVLDDVRSR--YFNYWQQLMYSLKSG 214 (879)
Q Consensus 185 ~~-k~~LlVlDdv~~~--~~~~~~~l~~~l~~~ 214 (879)
.. +.=++++|-.-.. +....+++...+...
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~ 349 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQV 349 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhc
Confidence 21 2346777887542 234455555555433
No 240
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.86 E-value=0.0037 Score=59.77 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=77.6
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCCCchh---HHHHHHHHHHHhhC
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVE---IDTVLQQISHYIQG 186 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~l~~~l~~ 186 (879)
++.|.|.+|+||||+|..+... ... .++++.-. ....+..+.|..... ..+..... ...+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~~e~~~ri~~h~~-~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFDDEMAARIAHHRQ-RRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCChHHHHHHHHHHHh-cCCCCCeEecccccHHHHHHhhcCC
Confidence 5789999999999999999863 211 13333332 333445555544433 22222211 12244444443333
Q ss_pred CeeEEEeeccccc-------ch-HhHHH----HHHhccCCCCCcEEEEEccchhhhhhcCccceEeCCCCCHHhHHHHHH
Q 002800 187 NRFLLVLDDVRSR-------YF-NYWQQ----LMYSLKSGSEGSRILVTTCEENVINKMGNTRMISLGTLSEEASWSLFC 254 (879)
Q Consensus 187 k~~LlVlDdv~~~-------~~-~~~~~----l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 254 (879)
.-++|+|.+..- +. +.|.. +...+. ..+..+|+|+-. +-.+..+.++....|.
T Consensus 77 -~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~E------------vg~g~vp~~~~~r~~~ 141 (170)
T PRK05800 77 -GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNE------------VGMGIVPEYRLGRHFR 141 (170)
T ss_pred -CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcC------------CcccccCCCHHHHHHH
Confidence 337888987321 10 22222 333333 345566777642 2222333445556666
Q ss_pred HHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 255 LVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 255 ~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
...+ ...+.+...+.++..-..|+|+-+
T Consensus 142 d~lG------~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAG------RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHH------HHHHHHHHHCCEEEEEeCCCcEec
Confidence 5553 335555555666666667888754
No 241
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0038 Score=72.33 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=87.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-ccc-----eEEEEEeecchHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-HFS-----KRIWVSASYPEIRIA 155 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~-----~~~wv~~s~~~~~~~ 155 (879)
..++|||+|++++++.|..... +-+| ++|.+|+|||++|.-++. ++.. .-+ ..++. -
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNPv--LiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s---L------ 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNPV--LVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS---L------ 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCCe--EecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE---e------
Confidence 3589999999999999998752 3333 679999999998887776 3221 111 11111 1
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeeccccc-------c--hHhHHHHHHhccCCCCCcEEEEEcc
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSR-------Y--FNYWQQLMYSLKSGSEGSRILVTTC 225 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~--~~~~~~l~~~l~~~~~gs~iiiTtR 225 (879)
++..-+. +.... .+.++....+.+.+ +.++..|++|.+++. . .+.-.-+.+++.. +.--.|=.||-
T Consensus 233 -D~g~LvA-GakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~ 308 (786)
T COG0542 233 -DLGSLVA-GAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTL 308 (786)
T ss_pred -cHHHHhc-ccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccH
Confidence 1111111 22222 22333333333333 345899999999762 1 1122224444433 23334455665
Q ss_pred chhh------hhhcCccceEeCCCCCHHhHHHHHHHHh
Q 002800 226 EENV------INKMGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 226 ~~~v------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
++.- +......+.+.|..-+.+++..++....
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4321 1111346789999999999999987543
No 242
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0067 Score=71.33 Aligned_cols=120 Identities=15% Similarity=0.218 Sum_probs=76.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCC--CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQ--TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
..++|.++.+..|.+.+.....+.. ...-.+.+.|+.|+|||-||++++. .+-+..+. +|.+. +.+... .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~--~IriD--mse~~e--v 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEEN--FIRLD--MSEFQE--V 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccc--eEEec--hhhhhh--h
Confidence 3588888999999998887653211 2456677899999999999999987 33333333 34333 222222 3
Q ss_pred HHhccCCC---CCchhHHHHHHHHHHHhhCCee-EEEeecccccchHhHHHHHHhccCC
Q 002800 160 ESLKDGVS---SDLVEIDTVLQQISHYIQGNRF-LLVLDDVRSRYFNYWQQLMYSLKSG 214 (879)
Q Consensus 160 ~~l~~~~~---~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 214 (879)
..+. +.+ .+....+ .|.+.++.++| +|+||||+..+.+....+...+..+
T Consensus 634 skli-gsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLI-GSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhcc-CCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3332 222 2223333 45556677876 5566999998888888777777654
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.012 Score=62.68 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=49.1
Q ss_pred CeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh-hhhhc-CccceEeCCCCCHHhHHHHHHHH
Q 002800 187 NRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN-VINKM-GNTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 187 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
++=++|+|+++..+...-..+...+.....+..+|++|.+.+ +...+ .....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344556699988777777777777776556677777777754 33232 23568899999999999888653
No 244
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.81 E-value=0.0032 Score=61.13 Aligned_cols=37 Identities=32% Similarity=0.628 Sum_probs=28.9
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEE
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVS 146 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 146 (879)
...+|.+.|+.|+||||+|+.++. +....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456899999999999999999998 5555555555553
No 245
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.81 E-value=0.00054 Score=63.63 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=45.8
Q ss_pred EEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee
Q 002800 112 ISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF 189 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 189 (879)
|.|+|++|+|||+||+.+++ .....+ .-+.++ .+..++. ................+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~~~---~~i~~~~~~~~~dl~----g~~~~~~~~~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGRPV---IRINCSSDTTEEDLI----GSYDPSNGQFEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTCEE---EEEE-TTTSTHHHHH----CEEET-TTTTCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhcce---EEEEeccccccccce----eeeeecccccccccccccccc-----ccee
Confidence 56999999999999999998 332221 123333 3333322 222200000000000011111 1789
Q ss_pred EEEeecccccchHhHHHHHHhccC
Q 002800 190 LLVLDDVRSRYFNYWQQLMYSLKS 213 (879)
Q Consensus 190 LlVlDdv~~~~~~~~~~l~~~l~~ 213 (879)
++|||+++....+.+..+...+..
T Consensus 68 il~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHHHSS
T ss_pred EEEECCcccCCHHHHHHHHHHHhh
Confidence 999999998766667777666643
No 246
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.81 E-value=0.011 Score=60.25 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=56.2
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC-------------------
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS------------------- 167 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~------------------- 167 (879)
+.-+++.|+|.+|+|||++|.++... ...+=..++|+....+..++.+++. +++-...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENTSKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCCHHHHHHHHH-HCCCChhHHHhCCCceEEeccccccc
Confidence 35678999999999999999999652 1122346888888766666665542 2320000
Q ss_pred CCchhHHHHHHHHHHHhhC-CeeEEEeeccc
Q 002800 168 SDLVEIDTVLQQISHYIQG-NRFLLVLDDVR 197 (879)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 197 (879)
....+.+.+.+.+.+.+.. +.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566667666654 55689999986
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.029 Score=63.00 Aligned_cols=133 Identities=20% Similarity=0.131 Sum_probs=72.6
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
...-|.|.|+.|+|||+||+++++... +.+.-.+.+|+.+ .+.+. +..|-. .+...+.+.+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~-~e~iQk--------------~l~~vfse~~~~ 493 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS-LEKIQK--------------FLNNVFSEALWY 493 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh-HHHHHH--------------HHHHHHHHHHhh
Confidence 345688999999999999999998433 4444456666655 11111 111111 122334445567
Q ss_pred CeeEEEeeccccc------chHhHHHH----HHhcc----C-CCCCcE--EEEEccchhhhh-hcC----ccceEeCCCC
Q 002800 187 NRFLLVLDDVRSR------YFNYWQQL----MYSLK----S-GSEGSR--ILVTTCEENVIN-KMG----NTRMISLGTL 244 (879)
Q Consensus 187 k~~LlVlDdv~~~------~~~~~~~l----~~~l~----~-~~~gs~--iiiTtR~~~v~~-~~~----~~~~~~l~~L 244 (879)
.+-++||||++.. ...+|... ..++. . ...+.+ +|.|.....-.. .+. ...+..+.++
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 8999999999541 11223221 11111 1 123334 455554432211 111 1346788888
Q ss_pred CHHhHHHHHHHH
Q 002800 245 SEEASWSLFCLV 256 (879)
Q Consensus 245 ~~~e~~~Lf~~~ 256 (879)
...+-.++++..
T Consensus 574 ~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 574 AVTRRKEILTTI 585 (952)
T ss_pred chhHHHHHHHHH
Confidence 888887777654
No 248
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.75 E-value=0.0096 Score=55.64 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=64.0
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-----cchHHHHHHHHHHh---ccCCC------CCch---h
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-----YPEIRIARAILESL---KDGVS------SDLV---E 172 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-----~~~~~~~~~i~~~l---~~~~~------~~~~---~ 172 (879)
..|-|++..|.||||+|...+- +...+=..+.++..- .....+++.+ ..+ ..+.. .... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 3677888889999999998876 443332233443322 2223333332 000 00010 0011 1
Q ss_pred HHHHHHHHHHHhhCCee-EEEeeccccc---chHhHHHHHHhccCCCCCcEEEEEccchh
Q 002800 173 IDTVLQQISHYIQGNRF-LLVLDDVRSR---YFNYWQQLMYSLKSGSEGSRILVTTCEEN 228 (879)
Q Consensus 173 ~~~~~~~l~~~l~~k~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 228 (879)
..+..+..++.+....| |||||++-.. ..-..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233344555555444 9999998542 22344667777777777889999999943
No 249
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.74 E-value=0.0097 Score=68.87 Aligned_cols=133 Identities=15% Similarity=0.242 Sum_probs=74.4
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccc-cccccceEEEEEee-cchHHHHHH
Q 002800 80 DSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDA-VKTHFSKRIWVSAS-YPEIRIARA 157 (879)
Q Consensus 80 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s-~~~~~~~~~ 157 (879)
....++|....+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++... -...| +.|++. ... ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~~~-~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAALSE-TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCCCH-HHHHH
Confidence 345799999999999988876532 233467999999999999999987321 11122 223332 222 22211
Q ss_pred HHHHhccCCCCCc-hhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEcc
Q 002800 158 ILESLKDGVSSDL-VEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTC 225 (879)
Q Consensus 158 i~~~l~~~~~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR 225 (879)
.+. +..... ..... ......-....-.|+||+|.....+....+...+.... ...|||.||.
T Consensus 266 ---~lf-g~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELF-GHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHc-CCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 121 111000 00000 00000001234568999999887777788877775432 1257888775
Q ss_pred c
Q 002800 226 E 226 (879)
Q Consensus 226 ~ 226 (879)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 250
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.74 E-value=0.006 Score=62.42 Aligned_cols=54 Identities=26% Similarity=0.285 Sum_probs=35.9
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc----cceEEEEEee--cchHHHHHHHHHHh
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH----FSKRIWVSAS--YPEIRIARAILESL 162 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s--~~~~~~~~~i~~~l 162 (879)
.-.++.|+|.+|+|||++|.+++........ -..++|++.. ++. +-+.++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~-~rl~~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP-ERLVQIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH-HHHHHHHHHh
Confidence 5678999999999999999999753222221 2568898876 343 3344444443
No 251
>PRK04132 replication factor C small subunit; Provisional
Probab=96.74 E-value=0.027 Score=66.84 Aligned_cols=152 Identities=11% Similarity=0.005 Sum_probs=96.2
Q ss_pred CCcchHHHHHHHHhcccccccccc-eEEEEEee-cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEee
Q 002800 117 MDGSGKTTLSRQVFDIDAVKTHFS-KRIWVSAS-YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLD 194 (879)
Q Consensus 117 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 194 (879)
|.++||||+|+.++++. ....++ ..+-++++ ..-.+..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~---------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIREKVKEFARTKPI---------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc---------------CCCCCEEEEEE
Confidence 78899999999999831 112222 24445555 22234444544443311110 01245799999
Q ss_pred cccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHH
Q 002800 195 DVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEH 272 (879)
Q Consensus 195 dv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~ 272 (879)
+++....+....+...+.......++|++|.+. .+.... .....+.+.+++.++..+.+...+...+.. .. .+
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~---~e 712 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LT---EE 712 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CC---HH
Confidence 999988788888888888766677777766653 333222 235789999999999988887766543321 11 33
Q ss_pred HHHHHHhhcCCChhHHH
Q 002800 273 IGRQVIRKCKNLPLAVK 289 (879)
Q Consensus 273 ~~~~i~~~~~glPLai~ 289 (879)
....|++.++|-+-.+.
T Consensus 713 ~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 713 GLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 47789999999875443
No 252
>PHA02244 ATPase-like protein
Probab=96.73 E-value=0.012 Score=62.40 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=52.7
Q ss_pred EEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEE
Q 002800 112 ISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLL 191 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 191 (879)
|.|+|++|+|||+||+.+++. .... |+.++..... ....+............+... + .+.-++
T Consensus 122 VLL~GppGtGKTtLA~aLA~~--lg~p-----fv~In~l~d~-----~~L~G~i~~~g~~~dgpLl~A----~-~~GgvL 184 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEA--LDLD-----FYFMNAIMDE-----FELKGFIDANGKFHETPFYEA----F-KKGGLF 184 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecChHH-----HhhcccccccccccchHHHHH----h-hcCCEE
Confidence 668999999999999999973 3322 3333311110 001110000111111111111 1 244699
Q ss_pred EeecccccchHhHHHHHHhccC-----------CCCCcEEEEEccc
Q 002800 192 VLDDVRSRYFNYWQQLMYSLKS-----------GSEGSRILVTTCE 226 (879)
Q Consensus 192 VlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iiiTtR~ 226 (879)
+||++.....+....+...+.. ..++.++|+|+-.
T Consensus 185 iLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 185 FIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred EEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 9999997666666656555531 1356788888865
No 253
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.086 Score=51.54 Aligned_cols=190 Identities=13% Similarity=0.135 Sum_probs=102.5
Q ss_pred ceeee-hhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHH
Q 002800 83 QVIVR-DGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIR 153 (879)
Q Consensus 83 ~~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~ 153 (879)
++||+ |..+++|.+.+.-+-.. +-...+=+.++|++|.|||-||++|++. ..+-|+.+| ...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgsel-- 217 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSEL-- 217 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHHH--
Confidence 46665 77777777666443210 2234556789999999999999999972 345567776 211
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeeccccc-----------chH---hHHHHHHhccCC--CC
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRSR-----------YFN---YWQQLMYSLKSG--SE 216 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~~--~~ 216 (879)
.+..- +. .......+.-.- ..-+-++..|.+++. +.+ ..-++...+..+ .+
T Consensus 218 -----vqk~i-ge------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 218 -----VQKYI-GE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -----HHHHh-hh------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 11111 00 011111221111 245678888888652 222 222333444332 35
Q ss_pred CcEEEEEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 217 GSRILVTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 217 gs~iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
.-+||+.|-.-++.... ..+..++..|-+++.-.++++-+.-+-+-. ..-++..+|.++.-..|.--.++..=
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~--rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT--RGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh--cccCHHHHHHhCCCCccchhhhhhhh
Confidence 66888877665554331 235678888888888778877665433321 12234445555544444334445555
Q ss_pred hhhc
Q 002800 292 GSHL 295 (879)
Q Consensus 292 ~~~l 295 (879)
|++.
T Consensus 364 agm~ 367 (404)
T KOG0728|consen 364 AGMY 367 (404)
T ss_pred hhHH
Confidence 5543
No 254
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.021 Score=65.50 Aligned_cols=161 Identities=15% Similarity=0.110 Sum_probs=91.1
Q ss_pred CceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 154 (879)
.++.|.+...+.+.+.+...-.. +-...+.+.++|++|.|||.||+++++ .....|- .+... +
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~--~- 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS--E- 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH--H-
Confidence 45666666665555544322110 123556788999999999999999998 4444442 22200 1
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc--------c---hHhHHHHHHhccCC--CCCcEEE
Q 002800 155 ARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR--------Y---FNYWQQLMYSLKSG--SEGSRIL 221 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~~~~l~~~l~~~--~~gs~ii 221 (879)
++... -......+.+.+....+..+..|.+|.++.- + .....++...+... ..+..||
T Consensus 312 ---l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 312 ---LLSKW------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred ---Hhccc------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 11110 0111222333334444578899999999652 0 12334455555432 3333445
Q ss_pred EEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhccCC
Q 002800 222 VTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFYWR 261 (879)
Q Consensus 222 iTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~ 261 (879)
-||-.+...... .-+..+.+.+-+.++..+.|..+.....
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 555544433321 2256889999999999999998876433
No 255
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.72 E-value=0.0065 Score=65.12 Aligned_cols=131 Identities=12% Similarity=0.152 Sum_probs=73.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i 158 (879)
..++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++.... ....-||.+. .+...+-..+
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~----r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS----RWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC----ccCCCeEEEeCCCCCHHHHHHHH
Confidence 4689999999999888876542 233467999999999999999986211 1112344444 2222222222
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
...-. +...+.. ......+. ....-.|+||||+.........+...+.... ...|||.||..
T Consensus 78 fg~~~-~~~~g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 78 FGHEA-GAFTGAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccc-cccCCcc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 21110 0000000 00001111 2233458899999987777778877765432 13588887754
No 256
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.023 Score=65.54 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=106.5
Q ss_pred CCceeeehh---hHHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHH
Q 002800 81 SSQVIVRDG---EKNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~ 153 (879)
-.++.|-|+ |++++++.|.++... +..-++=|.++|++|.|||-||++++-. ..-. |+.++ ..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--AgVP-----F~svSGSE--- 379 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AGVP-----FFSVSGSE--- 379 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--cCCc-----eeeechHH---
Confidence 357888876 555666666655321 2233455779999999999999999973 2222 34444 21
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc---------------chHhHHHHHHhccCCCCCc
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR---------------YFNYWQQLMYSLKSGSEGS 218 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~~l~~~l~~~~~gs 218 (879)
.++.+. +. + .....+.....-...+.++.+|+++-. ....+.++...+.....+.
T Consensus 380 ----FvE~~~-g~--~---asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 ----FVEMFV-GV--G---ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHhc-cc--c---hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 222222 11 0 111112222222356788888887531 1234455555555443333
Q ss_pred --EEEEEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 219 --RILVTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 219 --~iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
-++-+|...++.... .-+..+.+..-+.....++|..++...... .+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~----~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD----DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC----cchhhHHH-HHhcCCCCcHHH
Confidence 334466655554332 136788999999999999999998765543 22344566 888888887554
No 257
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.69 E-value=0.0059 Score=56.88 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.3
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 258
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.68 E-value=0.0098 Score=60.03 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=29.8
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS 148 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 148 (879)
.-+++.|.|.+|+||||+|.+++.. ....-..++|++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECC
Confidence 5678899999999999999999873 33333457787654
No 259
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.0046 Score=63.14 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=51.6
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccce-EEEEEee---cchHHHHHHHHHHhccCC------CCCchhHH-----
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSK-RIWVSAS---YPEIRIARAILESLKDGV------SSDLVEID----- 174 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s---~~~~~~~~~i~~~l~~~~------~~~~~~~~----- 174 (879)
..++|.|..|.||||||+.+++ .++.+|+. ++++.+. ..+.++..++...=.... ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998 55555644 4444454 445555555544211000 01111111
Q ss_pred HHHHHHHHHh--h-CCeeEEEeecccc
Q 002800 175 TVLQQISHYI--Q-GNRFLLVLDDVRS 198 (879)
Q Consensus 175 ~~~~~l~~~l--~-~k~~LlVlDdv~~ 198 (879)
...-.+.+++ + ++.+|+|+||+..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122344444 3 8899999999854
No 260
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.018 Score=55.47 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=62.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHHHHHHHhccCCC--CC-------chhHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIARAILESLKDGVS--SD-------LVEIDT 175 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~i~~~l~~~~~--~~-------~~~~~~ 175 (879)
-.+++|+|+.|.|||||.+.++.-. ......+++... .......+.+ ..+. ... .. ....+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~-~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLRKNI-AYVP-QDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHHhhE-EEEc-CCchhccchHHHHhhCHHHH
Confidence 4588999999999999999998731 222333333221 1111111100 0000 000 00 011122
Q ss_pred HHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhhh
Q 002800 176 VLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK 232 (879)
Q Consensus 176 ~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 232 (879)
..-.+...+..++=++++|+-.. .|....+.+...+.....+..||++|.+.+....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22335555667788999999754 2334444454444433335678888888766544
No 261
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.68 E-value=0.0075 Score=59.20 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=49.3
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHHHhccCC---CCCchhHHHHHHHHHHH
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILESLKDGV---SSDLVEIDTVLQQISHY 183 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~l~~~ 183 (879)
+|+.++|+.|+||||.+.+++.. ...+-..+..++.. ....+-++..++.++-.. .....+.+.+.+.+.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 68999999999999988888873 33333346677766 344566777777776211 11112223333344433
Q ss_pred hhCCeeEEEeeccc
Q 002800 184 IQGNRFLLVLDDVR 197 (879)
Q Consensus 184 l~~k~~LlVlDdv~ 197 (879)
-.++.=++++|=.-
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 22333477777764
No 262
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.65 E-value=0.011 Score=70.65 Aligned_cols=133 Identities=14% Similarity=0.262 Sum_probs=74.5
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
..++|+...+..+.+.+..-.. ...-|.|+|..|+|||++|+.+++... +.. ...+.+.+. .....+-..+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~-~~~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-RNN-RRMVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-CCC-CCeEEEecccCChhHhhhhhcC
Confidence 4799999999998877765432 233567999999999999999987321 111 122233333 222111111111
Q ss_pred HhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
... +...+. .......+ -....-.|+||||.....+....+...+.... ...|||.||..
T Consensus 450 ~~~-~~~~g~--~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 450 HER-GAFTGA--SAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred ccc-cccccc--ccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 111 110010 00111111 12234579999999887777777877764421 34588888864
No 263
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.65 E-value=0.032 Score=58.56 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=81.2
Q ss_pred ccccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHH
Q 002800 76 ISVVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIR 153 (879)
Q Consensus 76 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~ 153 (879)
.|..++. ++=..+....+...+... +.|.|.|++|+||||+|+.++. +....| +.|..+ .+..+
T Consensus 40 ~p~~d~~-y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~D 105 (327)
T TIGR01650 40 VPDIDPA-YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRID 105 (327)
T ss_pred CCCCCCC-ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhh
Confidence 3334443 444444556677777533 2488999999999999999998 443332 223333 12212
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccC--------------CCCCcE
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKS--------------GSEGSR 219 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------------~~~gs~ 219 (879)
+...-.-.+..+..... ..+-...+-..+.+.+++|.++...++....+...+.. ..+.-+
T Consensus 106 liG~~~~~l~~g~~~~~-----f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~Fr 180 (327)
T TIGR01650 106 LVGKDAIVLKDGKQITE-----FRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFR 180 (327)
T ss_pred cCCCceeeccCCcceeE-----EecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeE
Confidence 21111000100000000 00000001123567899999987766655554444331 123445
Q ss_pred EEEEccchhhhh----h----------cCcc-ceEeCCCCCHHhHHHHHHHHh
Q 002800 220 ILVTTCEENVIN----K----------MGNT-RMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 220 iiiTtR~~~v~~----~----------~~~~-~~~~l~~L~~~e~~~Lf~~~a 257 (879)
+|.|.-...-.. . +... .++.++-++.++=.+++...+
T Consensus 181 viAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 181 LFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred EEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 566554322110 0 1111 235788888888888887664
No 264
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.65 E-value=0.0042 Score=61.23 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=55.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHh----
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYI---- 184 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l---- 184 (879)
-+++.|.|++|.||||+++.+... +...=..++++.-+ ......+.+..+ .....+..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~apT---~~Aa~~L~~~~~----~~a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLAPT---NKAAKELREKTG----IEAQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEESS---HHHHHHHHHHHT----S-EEEHHHHTTEECCEECCSS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEECCc---HHHHHHHHHhhC----cchhhHHHHHhcCCccccccc
Confidence 457889999999999999998763 22221223333322 111222222222 11111111100000000
Q ss_pred --hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch
Q 002800 185 --QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE 227 (879)
Q Consensus 185 --~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 227 (879)
..++-+||+|++.-.+...+..+....+. .|+++|+.--..
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999998877788888777665 577888766443
No 265
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.64 E-value=0.0013 Score=59.25 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=19.8
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+|.|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 266
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.63 E-value=0.0066 Score=60.83 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=33.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIR 153 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~ 153 (879)
.-+++.|+|++|+|||++|.+++.. ....-..++|++.. ++...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~~~~~r 55 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEGLSPER 55 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCCHHH
Confidence 5678999999999999999998873 33344678898876 34433
No 267
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.61 E-value=0.0092 Score=60.63 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=50.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhccccccccc------ceEEEEEee--cchHHHHHHHHHHhccCC--------CCCch
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF------SKRIWVSAS--YPEIRIARAILESLKDGV--------SSDLV 171 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s--~~~~~~~~~i~~~l~~~~--------~~~~~ 171 (879)
.-.++.|+|.+|+|||++|.+++.. ....- ..++|+... ++.. -+.++.+...... -....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPE-RLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHH-HHHHHHHHhccchhhhhccEEEEeCC
Confidence 5678999999999999999999763 22222 457788766 3433 3344444432100 01112
Q ss_pred hHHHHHHHHHHHhh----CCeeEEEeecccc
Q 002800 172 EIDTVLQQISHYIQ----GNRFLLVLDDVRS 198 (879)
Q Consensus 172 ~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 198 (879)
+.+++...+.+... .+.-++|+|.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 34444444444432 2445888888743
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.60 E-value=0.02 Score=55.67 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=66.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHH------HHHHHhccC-----CCCCchhH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIAR------AILESLKDG-----VSSDLVEI 173 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~------~i~~~l~~~-----~~~~~~~~ 173 (879)
-.+++|+|+.|.|||||++.++.. .......+++... .+...... ++++.++.. ........
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 458999999999999999999873 2223334443221 12222111 133333311 11112223
Q ss_pred HHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CC-CcEEEEEccchhhh
Q 002800 174 DTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SE-GSRILVTTCEENVI 230 (879)
Q Consensus 174 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iiiTtR~~~v~ 230 (879)
+...-.+.+.+...+=++++|+--. .|....+.+...+... .. +..||++|.+.+..
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3334446666777888999999754 3444555555555432 22 66788888876554
No 269
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.59 E-value=0.11 Score=56.06 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=34.0
Q ss_pred ehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcc
Q 002800 87 RDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 87 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
|+.-.+.|.+.+...+. ....+|+|.|.=|+||||+.+.+.+.
T Consensus 1 ~~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred ChHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556778888876531 36789999999999999999999873
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.59 E-value=0.012 Score=56.03 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=27.1
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS 148 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 148 (879)
++.|+|++|+||||+|+.+... ....-..++|+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECC
Confidence 3679999999999999999873 33333457777765
No 271
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.58 E-value=0.022 Score=58.39 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=91.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcc-cccccccceEEEEEee---cchHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDI-DAVKTHFSKRIWVSAS---YPEIRIARA 157 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~wv~~s---~~~~~~~~~ 157 (879)
..++|-.++..++..++....- .+ ...-|.|+|+.|.|||+|......+ +++.++| +-|... ...+-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~-~g-EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL-HG-ESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH-hc-CCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 3689999999999988875432 11 2234669999999999998887765 2333333 333433 233345555
Q ss_pred HHHHhcc---CCCCCchhHHHHHHHHHHHhh------CCeeEEEeecccccchHhHHH-HHHhcc----CCCCCcEEEEE
Q 002800 158 ILESLKD---GVSSDLVEIDTVLQQISHYIQ------GNRFLLVLDDVRSRYFNYWQQ-LMYSLK----SGSEGSRILVT 223 (879)
Q Consensus 158 i~~~l~~---~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~-l~~~l~----~~~~gs~iiiT 223 (879)
|.+|+.. .......+..+....+-..|+ +-++++|+|.++--....-.. +...|. ...|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 6555541 111111222222233333332 236888888886531111111 222222 13456677889
Q ss_pred ccchh-------hhhhcCccceEeCCCCCHHhHHHHHHHHh
Q 002800 224 TCEEN-------VINKMGNTRMISLGTLSEEASWSLFCLVA 257 (879)
Q Consensus 224 tR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 257 (879)
||-.- |-.+.....++-+++++-++-..+++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99732 22222222345566666677666666554
No 272
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.55 E-value=0.017 Score=55.13 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=75.8
Q ss_pred EEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCCCchh---HHHHHHHHHHHhhCC
Q 002800 112 ISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVE---IDTVLQQISHYIQGN 187 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~l~~~l~~k 187 (879)
+.|.|.+|+|||++|.++... ....++++.-. .--.+..+.|.+-.. ..+..... ...+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~em~~rI~~H~~-~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDEMAERIARHRK-RRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHHHHHHHHHHHH-hCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999999763 22345566444 212233334333222 22222222 22333333221 2 2
Q ss_pred eeEEEeecccc--c----c---------hHhHHHHHHhccCCCCCcEEEEEccchhhhhhcCccceEeCCCCCHHhHHHH
Q 002800 188 RFLLVLDDVRS--R----Y---------FNYWQQLMYSLKSGSEGSRILVTTCEENVINKMGNTRMISLGTLSEEASWSL 252 (879)
Q Consensus 188 ~~LlVlDdv~~--~----~---------~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~e~~~L 252 (879)
.-.+++|.+.. . . .+.+..+...+.. .+..+|++|. +| -.+..+.+.....
T Consensus 74 ~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~viVsn--Ev----------G~g~vp~~~~~r~ 139 (169)
T cd00544 74 GDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN--KPGTLILVSN--EV----------GLGVVPENALGRR 139 (169)
T ss_pred CCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc--CCCcEEEEEC--Cc----------CCCCCCCCHHHHH
Confidence 34799999722 0 0 0122223333332 4556677763 22 2333445566666
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh
Q 002800 253 FCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL 286 (879)
Q Consensus 253 f~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL 286 (879)
|....+ ...+.+...+.++..-..|+|+
T Consensus 140 f~d~lG------~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELG------RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHH------HHHHHHHHHCCEEEEEECCcce
Confidence 766654 3355555566666666677776
No 273
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.53 E-value=0.01 Score=63.65 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=69.6
Q ss_pred eeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHH
Q 002800 84 VIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILE 160 (879)
Q Consensus 84 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~ 160 (879)
+||+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.+++...-. ..-|+.+. .+...+-..+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~----~~pfv~vnc~~~~~~~l~~~lfG 72 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRW----QGPLVKLNCAALSENLLDSELFG 72 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCcc----CCCeEEEeCCCCChHHHHHHHhc
Confidence 47888888888887776542 23346799999999999999998632111 12234443 222111111111
Q ss_pred HhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 161 SLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
... +...+... .....+ -....-.|+||+|.....+....+...+.... ...|||.||..
T Consensus 73 ~~~-g~~~ga~~--~~~G~~---~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 73 HEA-GAFTGAQK--RHQGRF---ERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ccc-ccccCccc--ccCCch---hhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 100 00000000 000001 12234568999999877777777777665431 23478887753
No 274
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.52 E-value=0.021 Score=55.68 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=72.6
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHH
Q 002800 80 DSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 80 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
+-..++|.|...+.|++--..-. .+....-|.+||.-|+|||+|++++.+ .+....-. -|.+..+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH---------
Confidence 34579999998888876433211 111334577999999999999999998 44444322 2222211
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC---CCCcEEEEEccc
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG---SEGSRILVTTCE 226 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iiiTtR~ 226 (879)
+..+...+.+.|+. ...||+|..||..- .+.+.+..+...+..+ .+.-.++..|.+
T Consensus 123 ---------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ---------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ---------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11122223333333 46899999999853 2345677788887753 344455555555
No 275
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.011 Score=63.89 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCceeeehh---hHHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhcc
Q 002800 80 DSSQVIVRDG---EKNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 80 ~~~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
.-.++-|.|+ |+++|++.|.++..- ++.=.+=|.++|++|.|||-||++|+-.
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3456778875 667777778765421 3334556789999999999999999973
No 276
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.49 E-value=0.013 Score=55.96 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=65.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHh
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYI 184 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 184 (879)
-.+++|+|+.|.|||||.+.++.. .......+++... .+..+..+ ..+. ...+....+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~--~~~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIA--MVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeE--EEEecCHHHHHHHHHHHHH
Confidence 348899999999999999999863 2233444554322 11111111 1111 0011222333444456666
Q ss_pred hCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhh
Q 002800 185 QGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVIN 231 (879)
Q Consensus 185 ~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~ 231 (879)
-.++=++++|+--. .|....+.+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77788899999754 3444555555555432 34667888888865433
No 277
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.0037 Score=59.22 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=57.2
Q ss_pred eeEEEEEecccCCCcccccCCCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccC--cccccCC
Q 002800 445 IQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVP--RGIRKLL 522 (879)
Q Consensus 445 ~r~L~l~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp--~~i~~L~ 522 (879)
...+++.+|++. ....+..+++|.+|.+..|. +...-|..-.-+++|.+|.|.+ |++.++- ..+..++
T Consensus 44 ~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNr---It~I~p~L~~~~p~l~~L~Ltn------Nsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 44 FDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNR---ITRIDPDLDTFLPNLKTLILTN------NSIQELGDLDPLASCP 113 (233)
T ss_pred cceecccccchh-hcccCCCccccceEEecCCc---ceeeccchhhhccccceEEecC------cchhhhhhcchhccCC
Confidence 344555555443 33455666777777776663 3232333334456677777776 5555542 2345666
Q ss_pred CCCEEecccCCCCcccCc----ccccCCCCcEEeccC
Q 002800 523 HLRYLNLSRNSKIAELPE----SLCDLYNLETMELSW 555 (879)
Q Consensus 523 ~Lr~L~L~~~~~i~~lP~----~i~~L~~L~~L~L~~ 555 (879)
.|+||.+-+|. +..-+. .+.++++|++||..+
T Consensus 114 ~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 77777777776 554442 356666666666654
No 278
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.47 E-value=0.02 Score=57.03 Aligned_cols=207 Identities=14% Similarity=0.152 Sum_probs=118.2
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcc----cccccccceEEEEEee----------
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDI----DAVKTHFSKRIWVSAS---------- 148 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~~s---------- 148 (879)
.+.++++....+....... +.+-..++|+.|.||-|.+..+.+. -..+-+-+.+-|...+
T Consensus 14 ~l~~~~e~~~~Lksl~~~~------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcccC------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 3667777777777666532 5677889999999999988777652 0111122334444322
Q ss_pred -------------cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCee-EEEeecccccchHhHHHHHHhccCC
Q 002800 149 -------------YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRF-LLVLDDVRSRYFNYWQQLMYSLKSG 214 (879)
Q Consensus 149 -------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 214 (879)
...+.+..+++.++......+ . -..+.| ++|+-.+++...+.-..+......-
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------T-QGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------h-ccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 122333444444433111000 0 012344 6667777665555556677666666
Q ss_pred CCCcEEEEEccchh-hhhhc-CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHh
Q 002800 215 SEGSRILVTTCEEN-VINKM-GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIG 292 (879)
Q Consensus 215 ~~gs~iiiTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~ 292 (879)
...+|+|+..-+.. +.... ...-.+++...+++|....++..+-+.+-. .+ .+++.+|+++++|.---...+-
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~--lp---~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ--LP---KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc--Cc---HHHHHHHHHHhcccHHHHHHHH
Confidence 67788887543311 11111 123468999999999999999887665442 22 5669999999998653333332
Q ss_pred hhcccC----------CCHHHHHHHHhhhhc
Q 002800 293 SHLRFK----------RNIGEWLNVLKSKIW 313 (879)
Q Consensus 293 ~~l~~~----------~~~~~w~~~~~~~~~ 313 (879)
..++.+ -..-+|+.+..+...
T Consensus 230 E~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 230 EAVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HHHHhccccccccCCCCCCccHHHHHHHHHH
Confidence 222211 123578877765443
No 279
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.46 E-value=0.021 Score=55.44 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=62.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhcc--CC------------CCCchhHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKD--GV------------SSDLVEID 174 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~--~~------------~~~~~~~~ 174 (879)
-.+++|+|+.|.|||||++.++-... .-...+++... +.......+-+.+.. .. .......+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~-~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV-PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE-EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 34789999999999999999987311 11223333221 111111111111110 00 00111123
Q ss_pred HHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhh
Q 002800 175 TVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVIN 231 (879)
Q Consensus 175 ~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 231 (879)
...-.+.+.+-.++=++++|+-.. .|....+.+...+.....+..||++|.+.....
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 333345566667788899999864 233444444444443234677888888876654
No 280
>PRK13695 putative NTPase; Provisional
Probab=96.45 E-value=0.0049 Score=59.67 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEEcCCcchHHHHHHHHhcc
Q 002800 111 IISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 281
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.45 E-value=0.028 Score=58.86 Aligned_cols=54 Identities=26% Similarity=0.201 Sum_probs=38.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc-cceEEEEEeecchHHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-FSKRIWVSASYPEIRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~i~~~l~ 163 (879)
.-.++.|.|.+|+||||++.+++.. .... =..++|++...+..++...+...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEEPVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEcccCHHHHHHHHHHHHh
Confidence 3457889999999999999998773 2222 3457888877666667766666543
No 282
>PRK08233 hypothetical protein; Provisional
Probab=96.43 E-value=0.0078 Score=58.76 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
..+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 283
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.42 E-value=0.033 Score=61.55 Aligned_cols=54 Identities=28% Similarity=0.315 Sum_probs=34.7
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cch--HHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPE--IRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~--~~~~~~i~~~l~ 163 (879)
...+|.++|.+|+||||+|..++.. ....-..++.|+.. +.. .+.++.++.+++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 4678999999999999999999873 33321234445544 322 344555555543
No 284
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.41 E-value=0.017 Score=55.73 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=61.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHHHHHHHhccCCC--CC-------chhHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIARAILESLKDGVS--SD-------LVEIDT 175 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~i~~~l~~~~~--~~-------~~~~~~ 175 (879)
-.+++|+|+.|.|||||++.++.. .......+++... .......+.+. .+. ... .. ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~-q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHVG-YLP-QDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhheE-EEC-CCCccccCcHHHHCcCHHHH
Confidence 348899999999999999999862 1222333333221 11111111111 001 110 00 111222
Q ss_pred HHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhh
Q 002800 176 VLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVIN 231 (879)
Q Consensus 176 ~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~ 231 (879)
..-.+.+.+-.++=++++|+-.. .|......+...+... ..|..||++|.+.+...
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33345555666777889999754 2334444444444332 23667888888876654
No 285
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.40 E-value=0.015 Score=66.57 Aligned_cols=135 Identities=15% Similarity=0.221 Sum_probs=76.3
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHH
Q 002800 80 DSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAI 158 (879)
Q Consensus 80 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i 158 (879)
....++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ..-...+.|.+. .....+-.++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCChHHHHHHh
Confidence 346799999999999998877543 334567999999999999999987321 111122334433 3222111111
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
..... +....... .....+. ....-.|+||+|.....+....+...+.... ...|||.||..
T Consensus 259 fG~~~-g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVK-GAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccc-cccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 11111 10000000 0000111 1223347899999987777788877765432 24588888754
No 286
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.38 E-value=0.047 Score=50.80 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=59.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
-.+++|+|..|.|||||++.+.... ......+|+... ..+. -..+....+...-.+.+.+..++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~-----------~~i~--~~~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST-----------VKIG--YFEQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe-----------EEEE--EEccCCHHHHHHHHHHHHHhcCC
Confidence 4588999999999999999998732 222334444210 0000 00001122233334555566677
Q ss_pred eEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhh
Q 002800 189 FLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVIN 231 (879)
Q Consensus 189 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 231 (879)
=++++|+--. .|....+.+...+... +..||++|.+.+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 8899998754 3445555555555443 246788887765543
No 287
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.37 E-value=0.0024 Score=71.00 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=40.3
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+++|.++.+++|++.|...........+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6999999999999988433221223567999999999999999999997
No 288
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.36 E-value=0.019 Score=56.38 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=31.6
Q ss_pred EEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHH
Q 002800 112 ISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAI 158 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i 158 (879)
+.|.|++|+|||++|.++... ....=..++|++...+..++.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCHHHHHHHH
Confidence 578999999999999998773 222224577887765555555443
No 289
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00042 Score=69.05 Aligned_cols=186 Identities=22% Similarity=0.193 Sum_probs=101.9
Q ss_pred cCCCCCEEecccCCCCcc---cCcccccCCCCcEEeccCccc---ccccchhhhcccccceEecCCcccc--cCCccCCC
Q 002800 520 KLLHLRYLNLSRNSKIAE---LPESLCDLYNLETMELSWCIS---LKRLPQRMGQLINLWHLVNDGTSLS--YMPKGIER 591 (879)
Q Consensus 520 ~L~~Lr~L~L~~~~~i~~---lP~~i~~L~~L~~L~L~~~~~---l~~lp~~i~~L~~L~~L~l~~~~l~--~lp~~i~~ 591 (879)
...+++.|+|.+|. |.. +-.-+.+|+.|++|+|+.|.. ++.+| ..+.+|+.|-|.++++. .....+..
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 46789999999998 553 333356789999999998732 23333 35578999999888754 33344556
Q ss_pred CCCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCCc
Q 002800 592 LTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKD 671 (879)
Q Consensus 592 l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 671 (879)
++.++.|++..++. | .+. +.......+ . +.+.+|++..|... .
T Consensus 145 lP~vtelHmS~N~~-------------------r-q~n---~Dd~c~e~~-s------~~v~tlh~~~c~~~-------~ 187 (418)
T KOG2982|consen 145 LPKVTELHMSDNSL-------------------R-QLN---LDDNCIEDW-S------TEVLTLHQLPCLEQ-------L 187 (418)
T ss_pred chhhhhhhhccchh-------------------h-hhc---ccccccccc-c------hhhhhhhcCCcHHH-------H
Confidence 66666666543321 1 000 000000000 0 11222222222100 0
Q ss_pred hHhhhcCCCCCCCccEEEEeeecCCccC-cchhhcccCCcEEeEcCCC--CCCCCCCCCCCCccceeeccccccceEe
Q 002800 672 DEDALEGLQVPPNLERLEIFYHRGNTLS-SIFIMSLAKLRSMSLDRCI--NLEQLPRLGELPSLESLTVRNMRRLEKV 746 (879)
Q Consensus 672 ~~~~l~~l~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~L~~~~--~~~~lp~l~~l~~L~~L~L~~~~~l~~~ 746 (879)
=......-...+++..+.+..++..... ...+..+|.+--|+|..+. .+..+..+.++|+|..|.+.+.+-...+
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 0000011123467888888877654431 1123356666677887763 2234455888999999999987765544
No 290
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.013 Score=56.28 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=49.7
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhh--CC
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQ--GN 187 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~k 187 (879)
.|.|.|++|.||||+|+.+.+... -.|.+..-|.... ....++-..+-..+..+. ..+.+-....+..++. +.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~---lv~d~i~~~~v~~rl~~~d~ 77 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILRAAIAERTELGEEIKKYIDKGE---LVPDEIVNGLVKERLDEADC 77 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHHhHhhhccCChHHHHHHHHHHcCC---ccchHHHHHHHHHHHHhhcc
Confidence 367999999999999999998311 1122222222221 112333333433343222 2222222233333333 22
Q ss_pred eeEEEeecccccchHhHHHHHHhccC
Q 002800 188 RFLLVLDDVRSRYFNYWQQLMYSLKS 213 (879)
Q Consensus 188 ~~LlVlDdv~~~~~~~~~~l~~~l~~ 213 (879)
+--+|+|+.-.. ..+++.+...+..
T Consensus 78 ~~~~I~dg~PR~-~~qa~~l~r~l~~ 102 (178)
T COG0563 78 KAGFILDGFPRT-LCQARALKRLLKE 102 (178)
T ss_pred cCeEEEeCCCCc-HHHHHHHHHHHHH
Confidence 227888988654 3455566555544
No 291
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.34 E-value=0.06 Score=63.35 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=85.2
Q ss_pred ceeeehhhHHHHHHHHhcCCC------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHH
Q 002800 83 QVIVRDGEKNRLLNLLLCESS------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIA 155 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~ 155 (879)
++.|.+...+++.+.+.-... .+..-.+-|.|+|++|+|||++|+.++. +....| +.++ .+..
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f-----~~is~~~~~--- 222 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF-----FTISGSDFV--- 222 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE-----EEEehHHhH---
Confidence 567777666666554432110 0011123488999999999999999987 333333 3333 1111
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccc----------hHhHHHHH----HhccCC--CCCcE
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRY----------FNYWQQLM----YSLKSG--SEGSR 219 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l~----~~l~~~--~~gs~ 219 (879)
.... +. ....+.+.+.......+.+|++|+++... ...+.... ..+... ..+.-
T Consensus 223 ----~~~~-g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 223 ----EMFV-GV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred ----Hhhh-cc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1111 10 11222333333334578899999996531 11222222 222221 23445
Q ss_pred EEEEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhcc
Q 002800 220 ILVTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFY 259 (879)
Q Consensus 220 iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~ 259 (879)
||.||...+..... .-+..+.+...+.++-.+++..+...
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 56677766543321 12567889988988888888877644
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0033 Score=57.27 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=25.5
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccc-cceEEEE
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTH-FSKRIWV 145 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv 145 (879)
--|.|.||+|+||||+++.+.+ ..+.. |...-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEE
Confidence 3578999999999999999998 44443 6554444
No 293
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.32 E-value=0.0056 Score=58.00 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=61.8
Q ss_pred ccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCC--CCCCCCCCC
Q 002800 651 NLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCIN--LEQLPRLGE 728 (879)
Q Consensus 651 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~--~~~lp~l~~ 728 (879)
+...++|+.|. ...+..+..++.|..|.+.+|.++.+.|..-..+++|..|.|.+|.. ++++.++..
T Consensus 43 ~~d~iDLtdNd-----------l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDND-----------LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS 111 (233)
T ss_pred ccceecccccc-----------hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc
Confidence 44556666554 33445667778999999999999998676666889999999999863 346777889
Q ss_pred CCccceeeccccc
Q 002800 729 LPSLESLTVRNMR 741 (879)
Q Consensus 729 l~~L~~L~L~~~~ 741 (879)
+|+|++|.+-+.+
T Consensus 112 ~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 112 CPKLEYLTLLGNP 124 (233)
T ss_pred CCccceeeecCCc
Confidence 9999999987754
No 294
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.29 E-value=0.017 Score=59.40 Aligned_cols=55 Identities=29% Similarity=0.357 Sum_probs=37.0
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc----cceEEEEEee--cchHHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH----FSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
.-.+.=|+|.+|+|||.||..++-...+... =..++|++-. ++...+ .+|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhccc
Confidence 4568899999999999999988753333221 2348899876 555444 46666543
No 295
>PRK06696 uridine kinase; Validated
Probab=96.28 E-value=0.0046 Score=62.51 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=35.0
Q ss_pred eehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 86 VRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 86 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.|++-+++|.+.+.... .....+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36677888888887532 23678999999999999999999987
No 296
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.27 E-value=0.016 Score=60.02 Aligned_cols=130 Identities=23% Similarity=0.261 Sum_probs=70.6
Q ss_pred eeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccc-cccccceEEE----EEee------c-chH
Q 002800 85 IVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDA-VKTHFSKRIW----VSAS------Y-PEI 152 (879)
Q Consensus 85 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~w----v~~s------~-~~~ 152 (879)
-+|..+..--.++|.++ ++..|.+.|.+|.|||.||.+..=.+. .++.|...+- +.+. + +.+
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34666777777778765 688999999999999998877543212 2333443221 1111 0 011
Q ss_pred -------HHHHHHHHHhccCCCCCchhHHHHHHHH---------HHHhhCC---eeEEEeecccccchHhHHHHHHhccC
Q 002800 153 -------RIARAILESLKDGVSSDLVEIDTVLQQI---------SHYIQGN---RFLLVLDDVRSRYFNYWQQLMYSLKS 213 (879)
Q Consensus 153 -------~~~~~i~~~l~~~~~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~ 213 (879)
+-..+-++.+.....+. ...+...+ -.+.+++ +-++|+|.+.+..+.+. ..-+-.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphei---kTiltR 374 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHEL---KTILTR 374 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHH---HHHHHh
Confidence 11112222222111112 11121111 1223344 46899999988655444 444556
Q ss_pred CCCCcEEEEEccc
Q 002800 214 GSEGSRILVTTCE 226 (879)
Q Consensus 214 ~~~gs~iiiTtR~ 226 (879)
.+.||||+.|---
T Consensus 375 ~G~GsKIVl~gd~ 387 (436)
T COG1875 375 AGEGSKIVLTGDP 387 (436)
T ss_pred ccCCCEEEEcCCH
Confidence 7899999998753
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=96.23 E-value=0.043 Score=58.45 Aligned_cols=112 Identities=19% Similarity=0.192 Sum_probs=56.6
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc-cceEEEEEee-cc--hHHHHHHHHHHhccCCC--CCchhHHH-HHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-FSKRIWVSAS-YP--EIRIARAILESLKDGVS--SDLVEIDT-VLQQI 180 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s-~~--~~~~~~~i~~~l~~~~~--~~~~~~~~-~~~~l 180 (879)
+..++.++|++|+||||++..++.. ...+ + .++.+... +. ..+-++..+..++.... ....+... ..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4679999999999999988888763 3322 3 34444443 22 22334455555541111 11112222 22333
Q ss_pred HHHhhCCeeEEEeeccccc--chHhHHHHHHhccCCCCCcEEEE
Q 002800 181 SHYIQGNRFLLVLDDVRSR--YFNYWQQLMYSLKSGSEGSRILV 222 (879)
Q Consensus 181 ~~~l~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iii 222 (879)
...-....=++++|-+... +...++++........+.-.++|
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 3222222238889998653 33455555444333333334444
No 298
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.063 Score=52.34 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccC-CCCCcEEEEEccchhhhhhcCccceEe
Q 002800 177 LQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKS-GSEGSRILVTTCEENVINKMGNTRMIS 240 (879)
Q Consensus 177 ~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~v~~~~~~~~~~~ 240 (879)
...+.+.+-=++=+.|||..++ .|.+....+...... ..+|+-++|.|-.+.++.....+.+|-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 3444555555778999999987 345555555544433 234777888888888888876655443
No 299
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.21 E-value=0.017 Score=65.18 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=53.1
Q ss_pred CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 002800 105 KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILESLKDGVSSDLVEIDTVLQQISH 182 (879)
Q Consensus 105 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 182 (879)
..+..+++.++|++|+||||||+-+++.. .|. ++=|.+| .+...+-..|...+. .. .
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa----GYs-VvEINASDeRt~~~v~~kI~~avq-~~---------------s 380 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEINASDERTAPMVKEKIENAVQ-NH---------------S 380 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc----Cce-EEEecccccccHHHHHHHHHHHHh-hc---------------c
Confidence 35677899999999999999999998721 122 4445555 233333333332222 11 1
Q ss_pred Hh--hCCeeEEEeecccccchHhHHHHHHhcc
Q 002800 183 YI--QGNRFLLVLDDVRSRYFNYWQQLMYSLK 212 (879)
Q Consensus 183 ~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 212 (879)
.+ .+++.-||+|.++.......+.+...+.
T Consensus 381 ~l~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 12 2678889999999876444555554443
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.21 E-value=0.038 Score=53.17 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=66.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcc---cccccc---cc--eEEEEEeecchHHHHHHHHHHhccCCC------CCchhHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDI---DAVKTH---FS--KRIWVSASYPEIRIARAILESLKDGVS------SDLVEID 174 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~s~~~~~~~~~i~~~l~~~~~------~~~~~~~ 174 (879)
-.+++|+|+.|+|||||.+.+..+ .++... |. ...|+. + .+.+..+..... ......+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~------q--~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID------Q--LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh------H--HHHHHHcCCCccccCCCcCcCCHHH
Confidence 458899999999999999998632 111111 10 122221 1 345555542111 1112223
Q ss_pred HHHHHHHHHhhCC--eeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhhhcCccceEeC
Q 002800 175 TVLQQISHYIQGN--RFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVINKMGNTRMISL 241 (879)
Q Consensus 175 ~~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~~~~~~~~~l 241 (879)
...-.+.+.+..+ +=++++|+--. .+....+.+...+... ..|..||++|.+.+.... .+.++.+
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 3333455555566 67888898744 2344445555444432 246778888888766543 3344444
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.061 Score=59.62 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=51.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cch--HHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhh
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPE--IRIARAILESLKDGVSSDLVEIDTVLQQISHYIQ 185 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 185 (879)
.+++.++|++|+||||++..++........-..+..|+.. +.. .+-++...+.++ -......+.+.+...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-IPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-CceEccCCHHhHHHHHHH-hC
Confidence 4689999999999999998887622201222345566554 221 122333333332 111112233444445543 23
Q ss_pred CCeeEEEeecccc--cchHhHHHHHHhcc
Q 002800 186 GNRFLLVLDDVRS--RYFNYWQQLMYSLK 212 (879)
Q Consensus 186 ~k~~LlVlDdv~~--~~~~~~~~l~~~l~ 212 (879)
..=+|++|..-. .+....+.+...+.
T Consensus 299 -~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 -DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred -CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 345788897633 22333344544444
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.18 E-value=0.032 Score=56.97 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=37.1
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
.-+++.|.|.+|+|||++|.++... ....-..++|++...+..++.+++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeCCHHHHHHHHH
Confidence 5678999999999999999997652 2233456888887766666666543
No 303
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.18 E-value=0.043 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.4
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
++.++|++|+||||+++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999987
No 304
>PRK00625 shikimate kinase; Provisional
Probab=96.16 E-value=0.061 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.|.|+||+|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 305
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.036 Score=60.19 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=57.7
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccc--cccceEEEEEee-cch--HHHHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVK--THFSKRIWVSAS-YPE--IRIARAILESLKDGVSSDLVEIDTVLQQISH 182 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s-~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 182 (879)
..++|.++|+.|+||||.+..++...... .+-..+..+++. +.. .+-++..++.++ -........+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cceEeeCcHHHHHHHHHH
Confidence 45799999999999999999988632211 112245556665 322 223444445444 111122233445444444
Q ss_pred HhhCCeeEEEeeccccc--chHhHHHHHHhccCC
Q 002800 183 YIQGNRFLLVLDDVRSR--YFNYWQQLMYSLKSG 214 (879)
Q Consensus 183 ~l~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~ 214 (879)
. .+.-++++|.+... +...+..+...+...
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 3 44568888998653 222445555555543
No 306
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.15 E-value=0.055 Score=51.76 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=62.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhccccc-ccc--cc---eEEEEEee--cchHHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAV-KTH--FS---KRIWVSAS--YPEIRIARAILESLKDGVSSDLVEIDTVLQQI 180 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 180 (879)
-.+++|+|+.|.|||||++.++..... .+. ++ .+.++.-. .....+...+.. .........+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHHH
Confidence 458899999999999999999873211 111 11 11122111 111122222211 0112223334444455
Q ss_pred HHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhh
Q 002800 181 SHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVIN 231 (879)
Q Consensus 181 ~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 231 (879)
.+.+..++=++++|+--. .|....+.+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 666667777888998644 2334445555544433 356888887766543
No 307
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.10 E-value=0.039 Score=55.85 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=33.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAI 158 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i 158 (879)
.-.++.|.|.+|+||||+|.++... -.+.. ..+++++...+..++.+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCCCHHHHHHHH
Confidence 4558999999999999998776653 11222 3466777555566666666
No 308
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.07 E-value=0.011 Score=58.46 Aligned_cols=110 Identities=11% Similarity=0.168 Sum_probs=58.6
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeE
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFL 190 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 190 (879)
++.|+|+.|+||||+++.+.. .+.......++.-.. ..+........-+. .... ..+.....+.++..+...+=.
T Consensus 3 lilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~-~~E~~~~~~~~~i~-q~~v-g~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIED-PIEFVHESKRSLIN-QREV-GLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcC-CccccccCccceee-eccc-CCCccCHHHHHHHHhcCCcCE
Confidence 688999999999999998776 333333334443222 11110000000001 0000 111233455677777777789
Q ss_pred EEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhh
Q 002800 191 LVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVI 230 (879)
Q Consensus 191 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~ 230 (879)
+++|++.+. +.+..+.... ..|-.|+.|+-..++.
T Consensus 78 ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 78 ILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 999999763 4444433332 2354577777655544
No 309
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.06 E-value=0.052 Score=55.19 Aligned_cols=116 Identities=18% Similarity=0.142 Sum_probs=63.7
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhcc--------CC-----C-------
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKD--------GV-----S------- 167 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~--------~~-----~------- 167 (879)
.-.++.|.|.+|+||||+|.++... ....-..++|++...+..++.+. +++++. +. .
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~~~ 95 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEESRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEKED 95 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCCHHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence 4568899999999999999987652 22233467888765444444333 222210 00 0
Q ss_pred ---CCchhHHHHHHHHHHHhhC---CeeEEEeeccccc---chHhHHHHHHhccC--CCCCcEEEEEccc
Q 002800 168 ---SDLVEIDTVLQQISHYIQG---NRFLLVLDDVRSR---YFNYWQQLMYSLKS--GSEGSRILVTTCE 226 (879)
Q Consensus 168 ---~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iiiTtR~ 226 (879)
....+.+++...+++.++. +.-.+|+|.+..- ....-..+...+.. ...|..+|+|+..
T Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 96 EWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 0112455666666665543 4468899997532 11111222211211 2357788888763
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.055 Score=57.69 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=58.1
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cch--HHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPE--IRIARAILESLKDGVSSDLVEIDTVLQQISHY 183 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 183 (879)
...++++|+|+.|+||||++..++.. ....-..+.+|+.. +.. .+-++..++.++ -......+.+++.+.+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lg-vpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLD-VELIVATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCC-CCEEecCCHHHHHHHHHHH
Confidence 35689999999999999999999873 32222346667665 332 344455555444 1111223445555555443
Q ss_pred hh-CCeeEEEeecccc--cchHhHHHHHHhc
Q 002800 184 IQ-GNRFLLVLDDVRS--RYFNYWQQLMYSL 211 (879)
Q Consensus 184 l~-~k~~LlVlDdv~~--~~~~~~~~l~~~l 211 (879)
-. +..=++++|-.-. .+.+..+++....
T Consensus 281 ~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 281 TYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 21 3446788888855 2333445554433
No 311
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.02 E-value=0.011 Score=62.31 Aligned_cols=86 Identities=22% Similarity=0.190 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCC----CCCchhHHHHHHHHHH
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGV----SSDLVEIDTVLQQISH 182 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~ 182 (879)
+.-+++-|+|++|+||||||.+++.. ....-..++|++...... .+.+++++... .....+.++....+..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~---~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALD---PVYAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHH---HHHHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 35678899999999999999998763 333345678887752111 12334443100 0122234555555555
Q ss_pred Hhh-CCeeEEEeeccc
Q 002800 183 YIQ-GNRFLLVLDDVR 197 (879)
Q Consensus 183 ~l~-~k~~LlVlDdv~ 197 (879)
.++ +..-++|+|-|-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 544 445689999985
No 312
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.01 E-value=0.064 Score=52.33 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 313
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0057 Score=68.54 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=64.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAI 158 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i 158 (879)
+.+-+|.++-+++|.+.+--..-.+...-++++.+|++|+|||++|+.++. .....|- + +++. .|..++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf-R--fSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF-R--FSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE-E--EeccccccHHhhccc-
Confidence 457899999999999988644322334678999999999999999999998 4555552 1 2222 443332100
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccc
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRS 198 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 198 (879)
. ....+.. ...+++.+++. +-..=|+.+|.|+.
T Consensus 484 ----R-RTYVGAM-PGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 ----R-RTYVGAM-PGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----c-eeeeccC-ChHHHHHHHhh-CCCCceEEeehhhh
Confidence 0 0001111 23344555443 34456788899965
No 314
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.00 E-value=0.012 Score=58.20 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=62.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCC--c----hhHHHHHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSD--L----VEIDTVLQQISH 182 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~--~----~~~~~~~~~l~~ 182 (879)
.+++.|.|+.|.||||+.+.+.-.. +. ....++|.+.+..-.+...+...+....... . .+..++. .+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~l--a~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~il~ 104 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IM--AQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YILD 104 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HH--HHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHH-HHHH
Confidence 4689999999999999999987521 11 1122333333111233333433333111110 0 1122221 1222
Q ss_pred HhhCCeeEEEeecccc-cchHh----HHHHHHhccCCCCCcEEEEEccchhhhhhcC
Q 002800 183 YIQGNRFLLVLDDVRS-RYFNY----WQQLMYSLKSGSEGSRILVTTCEENVINKMG 234 (879)
Q Consensus 183 ~l~~k~~LlVlDdv~~-~~~~~----~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~ 234 (879)
+..++-|+++|.... .+..+ ...+...+.. .|..+|+||-+.+++..+.
T Consensus 105 -~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 105 -YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred -hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 235678999999743 11222 1223333433 3789999999988877654
No 315
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.00 E-value=0.0099 Score=62.54 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=52.1
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCC----CCCchhHHHHHHHHHH
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGV----SSDLVEIDTVLQQISH 182 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~ 182 (879)
+.-+++-|+|++|+||||||.++... ....-..++|++....... ..+++++-.. .......++....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~---~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP---VYARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH---HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 36678999999999999999998763 3333345778876522111 1344443100 0122334555555555
Q ss_pred Hhh-CCeeEEEeecccc
Q 002800 183 YIQ-GNRFLLVLDDVRS 198 (879)
Q Consensus 183 ~l~-~k~~LlVlDdv~~ 198 (879)
.++ +..-++|+|.|..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 554 4566899999853
No 316
>PRK10867 signal recognition particle protein; Provisional
Probab=95.99 E-value=0.074 Score=58.67 Aligned_cols=41 Identities=32% Similarity=0.512 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 91 KNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 91 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.++|.+.+...... ......+|.++|++|+||||.|..++.
T Consensus 79 ~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 79 NDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred HHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 34566666432110 123468999999999999998888776
No 317
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.3 Score=51.30 Aligned_cols=169 Identities=9% Similarity=0.027 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccc--------ccccccceEEEEEeecchHHHHHHHHHHh
Q 002800 91 KNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDID--------AVKTHFSKRIWVSASYPEIRIARAILESL 162 (879)
Q Consensus 91 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~s~~~~~~~~~i~~~l 162 (879)
++.+...+..+. -..+..++|..|.||+++|+.+.+.. ....|-+...++...
T Consensus 5 ~~~l~~~i~~~~-----l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~-------------- 65 (299)
T PRK07132 5 IKFLDNSATQNK-----ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF-------------- 65 (299)
T ss_pred HHHHHHHHHhCC-----CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC--------------
Confidence 344455554432 34566799999999999999998731 001111122222210
Q ss_pred ccCCCCCchhHHHHHHHHHHHh--hCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccc-hhhhhh-cCccce
Q 002800 163 KDGVSSDLVEIDTVLQQISHYI--QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE-ENVINK-MGNTRM 238 (879)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~-~~~~~~ 238 (879)
+......+..++.+.+.-.- .+++=++|+|+++.........+...+....+.+.+|++|.+ ..+... ......
T Consensus 66 --g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 66 --DKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred --CCcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 01111112222222221110 146678888999887667788899999888888888876654 333333 234678
Q ss_pred EeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHH
Q 002800 239 ISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVI 291 (879)
Q Consensus 239 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~ 291 (879)
+++.+++.++..+.+... + .+ ++.+..++...+|.=-|+..+
T Consensus 144 ~~f~~l~~~~l~~~l~~~--~--~~-------~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSK--N--KE-------KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred EECCCCCHHHHHHHHHHc--C--CC-------hhHHHHHHHHcCCHHHHHHHH
Confidence 999999999998877653 1 11 222556666677643555554
No 318
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.015 Score=55.28 Aligned_cols=22 Identities=41% Similarity=0.791 Sum_probs=19.8
Q ss_pred cEEEEEcCCcchHHHHHHHHhc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999987
No 319
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.95 E-value=0.031 Score=57.76 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=33.0
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHH
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAI 158 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i 158 (879)
..-+++.|.|.+|+|||++|.+++.. ....=..++|++.......+..++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~~~~~~~~l 83 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESPANFVYTSL 83 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCCchHHHHHH
Confidence 35678899999999999999998663 212224577777653333333333
No 320
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.93 E-value=0.027 Score=59.02 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=27.8
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS 148 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 148 (879)
..++++|+|++|+||||++..++.....+..-..+..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45699999999999999999988732222111235555554
No 321
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.90 E-value=0.08 Score=54.17 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+..|+|+||+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 557899999999999999986
No 322
>PRK07667 uridine kinase; Provisional
Probab=95.90 E-value=0.0094 Score=58.69 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 91 KNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 91 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.+.|.+.+.... ....+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456667776543 2558999999999999999999987
No 323
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.88 E-value=0.039 Score=53.12 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=58.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEE---eecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhh
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVS---ASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQ 185 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 185 (879)
-.+++|+|+.|.|||||++.+..-. ......+++. +.+-.. .......+...-.+.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q--------------~~~LSgGq~qrv~laral~ 87 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQ--------------YIDLSGGELQRVAIAAALL 87 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcc--------------cCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999999998621 1222333322 110000 0002222333344556666
Q ss_pred CCeeEEEeecccc-cchHhHHHHHHhccCC-C-CCcEEEEEccchhhhh
Q 002800 186 GNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-S-EGSRILVTTCEENVIN 231 (879)
Q Consensus 186 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~-~gs~iiiTtR~~~v~~ 231 (879)
.++=++++|+--. .+....+.+...+... . .+..||++|.+.....
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 7788999999754 2334444444444331 1 2256777777765544
No 324
>PRK13948 shikimate kinase; Provisional
Probab=95.88 E-value=0.078 Score=51.27 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.7
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999987
No 325
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.015 Score=56.83 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=43.8
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhc-cCCCCCchhHHHHHHHHHHHhh
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLK-DGVSSDLVEIDTVLQQISHYIQ 185 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~l~~~l~ 185 (879)
.+.+|+|.|.+|+||||+|+.++. .+..+. +.-++.. +-...-.....+... .-......+.+-+.+.|...++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHc
Confidence 567999999999999999999998 444331 1112211 111110011111111 0122445667777888888888
Q ss_pred CCe
Q 002800 186 GNR 188 (879)
Q Consensus 186 ~k~ 188 (879)
+++
T Consensus 83 g~~ 85 (218)
T COG0572 83 GKP 85 (218)
T ss_pred CCc
Confidence 876
No 326
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.86 E-value=0.06 Score=58.90 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=35.9
Q ss_pred CCceeeehhhHHHHHHHHhc------C--CCCCC----CCccEEEEEcCCcchHHHHHHHHhc
Q 002800 81 SSQVIVRDGEKNRLLNLLLC------E--SSEKQ----TTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~----~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+||.++.++.+...+.. . ..... .....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 34689999999888766521 0 00000 1135688999999999999999986
No 327
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.048 Score=54.89 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=68.2
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccc-----cc------ccc---ceEEEEEee--------cc-----------------
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDA-----VK------THF---SKRIWVSAS--------YP----------------- 150 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~s--------~~----------------- 150 (879)
.+++|+|+.|.|||||.+.+.--.+ +. ..+ ..+.||.-. .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999886111 00 001 124454310 01
Q ss_pred -----hHHHHHHHHHHhccC----CCC-CchhHHHHHHHHHHHhhCCeeEEEeecc----cccchHhHHHHHHhccCCCC
Q 002800 151 -----EIRIARAILESLKDG----VSS-DLVEIDTVLQQISHYIQGNRFLLVLDDV----RSRYFNYWQQLMYSLKSGSE 216 (879)
Q Consensus 151 -----~~~~~~~i~~~l~~~----~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~l~~~l~~~~~ 216 (879)
.++...+.+++++.. ... .....+...-.|.+.|..++=|+|||.= +.......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 124444455554411 111 1223344455677888899999999973 333333444455555444
Q ss_pred CcEEEEEccchhh
Q 002800 217 GSRILVTTCEENV 229 (879)
Q Consensus 217 gs~iiiTtR~~~v 229 (879)
|.-||++|-+-..
T Consensus 189 g~tIl~vtHDL~~ 201 (254)
T COG1121 189 GKTVLMVTHDLGL 201 (254)
T ss_pred CCEEEEEeCCcHH
Confidence 8889999988543
No 328
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.85 E-value=0.029 Score=59.44 Aligned_cols=67 Identities=24% Similarity=0.264 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccc----cccceEEEEEee--cchHHHHHHHHHHhc
Q 002800 92 NRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVK----THFSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 92 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
..|-++|..+- ..-+++-|+|++|+|||+|+.+++-..... ..=..++||+.. ++..++ .+++++++
T Consensus 83 ~~LD~lLgGGi----~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi-~~~a~~~g 155 (313)
T TIGR02238 83 QALDGILGGGI----ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRI-RAIAERFG 155 (313)
T ss_pred HHHHHHhCCCC----cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHH-HHHHHHcC
Confidence 34444555432 356788899999999999999876432221 112358898876 555554 45666664
No 329
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.063 Score=53.57 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=39.4
Q ss_pred HHHHhhCCeeEEEeecccc-cchHhHHHHHHhccC-CCCCcEEEEEccchhhhhhcCccceEeCCCCCH
Q 002800 180 ISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKS-GSEGSRILVTTCEENVINKMGNTRMISLGTLSE 246 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~ 246 (879)
+...+..++-++++|+--. .|....+.+...+.. ...|..||++|.+...... ..++.++++..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 4455556778999999754 244445555555543 2346678888888655443 56677766443
No 330
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.06 Score=57.98 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=49.2
Q ss_pred CccEEEEEcCCcchHHHHHHHHhccccccccc--ceEEEEEee-c--chHHHHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF--SKRIWVSAS-Y--PEIRIARAILESLKDGVSSDLVEIDTVLQQISH 182 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s-~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 182 (879)
...+++++|+.|+||||++.+++. +....+ ..+..+... + ...+-++...+.++ -......+..++...+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g-v~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG-VPVHAVKDGGDLQLALAE 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC-CceEecCCcccHHHHHHH
Confidence 356999999999999999999987 332232 345556544 2 33455555555554 221112222233333333
Q ss_pred HhhCCeeEEEeecccc
Q 002800 183 YIQGNRFLLVLDDVRS 198 (879)
Q Consensus 183 ~l~~k~~LlVlDdv~~ 198 (879)
+.++ =++++|..-.
T Consensus 213 -l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 213 -LRNK-HMVLIDTIGM 226 (374)
T ss_pred -hcCC-CEEEEcCCCC
Confidence 3454 4556898854
No 331
>PTZ00301 uridine kinase; Provisional
Probab=95.85 E-value=0.013 Score=58.17 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=21.6
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 357899999999999999999876
No 332
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.83 E-value=0.038 Score=63.35 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=70.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAIL 159 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~ 159 (879)
-.+++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++.... ..-..-+.+.+. .....+-..+.
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~~~~~e~elF 276 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIPDDVVESELF 276 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCCHHHHHHHhc
Confidence 34799999888888877754322 222367999999999999999876211 111112233333 22211111111
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
+ ..............-+.+ ....-.|+||+|+.........+...+..+. ...|||.||..
T Consensus 277 ---G-~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 277 ---G-HAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred ---C-CCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 1 111000000000000011 1223457899999877666777777765431 13478887765
No 333
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.17 Score=51.10 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=60.3
Q ss_pred CceeeehhhHHHHHHHHhcCCC------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~ 154 (879)
+++.|-+..++.|.+...-+-. ++...-+-|.++|++|.||+-||++|+.. ....| .++| .|+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnSTF-----FSvSSSDL--- 202 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANSTF-----FSVSSSDL--- 202 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCce-----EEeehHHH---
Confidence 4688888888888876543211 12234677889999999999999999983 32333 4444 221
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHh-hCCeeEEEeecccc
Q 002800 155 ARAILESLKDGVSSDLVEIDTVLQQISHYI-QGNRFLLVLDDVRS 198 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 198 (879)
...-. .+.+.++..+.+.- .+|+-+|.+|.|+.
T Consensus 203 ----vSKWm-------GESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 203 ----VSKWM-------GESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ----HHHHh-------ccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11111 12334455555444 36889999999965
No 334
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.073 Score=51.35 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=63.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHHhcc--CCC---CC--------chhH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILESLKD--GVS---SD--------LVEI 173 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~l~~--~~~---~~--------~~~~ 173 (879)
-.+++|+|+.|.|||||++.++... ......+++... .+.. ..+...+.. +.. .. ....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3489999999999999999998731 122334443221 1000 111111110 000 00 1112
Q ss_pred HHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhhh
Q 002800 174 DTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVINK 232 (879)
Q Consensus 174 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~ 232 (879)
+...-.+...+..++=++++|+-.. .|....+.+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2233346666777888999999754 2344444555544432 236778888888765543
No 335
>PRK04328 hypothetical protein; Provisional
Probab=95.80 E-value=0.098 Score=53.76 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=54.0
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccC-------C--------C-----
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDG-------V--------S----- 167 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~-------~--------~----- 167 (879)
.-.++.|.|.+|+|||+||.++... ....-..++|++...+..++.+. +++++-. . .
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~~~~ 98 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEHPVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGGIGS 98 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCCHHHHHHH-HHHcCCCHHHHhhcCCEEEEecccccccc
Confidence 5678899999999999999998763 22334567888877555554433 2333200 0 0
Q ss_pred ---------CCchhHHHHHHHHHHHhhC-CeeEEEeeccc
Q 002800 168 ---------SDLVEIDTVLQQISHYIQG-NRFLLVLDDVR 197 (879)
Q Consensus 168 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 197 (879)
....+.+.+...+.+.+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 99 AAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred ccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0123455566666666543 44579999984
No 336
>PRK09354 recA recombinase A; Provisional
Probab=95.77 E-value=0.022 Score=60.53 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCC----CCCchhHHHHHHHHHH
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGV----SSDLVEIDTVLQQISH 182 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~ 182 (879)
+.-+++-|+|++|+||||||.+++.. ....-..++|+........ ..+++++-.. .......++....+..
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~---~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP---VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH---HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 35678899999999999999998763 3333456888877622221 2344443100 0112234555555555
Q ss_pred Hhh-CCeeEEEeecccc
Q 002800 183 YIQ-GNRFLLVLDDVRS 198 (879)
Q Consensus 183 ~l~-~k~~LlVlDdv~~ 198 (879)
.++ ++.-+||+|-|-.
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 554 4456899999853
No 337
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.76 E-value=0.04 Score=50.62 Aligned_cols=107 Identities=16% Similarity=0.226 Sum_probs=66.0
Q ss_pred EEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEE
Q 002800 112 ISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLL 191 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 191 (879)
+.|+|-||+||+++.+.+|.. -..+.|...+|+..-.+-.++ +.+.....+
T Consensus 23 ~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v-----------------~~Edvr~ml----------- 73 (246)
T KOG4252|consen 23 FVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKV-----------------LIEDVRSML----------- 73 (246)
T ss_pred EEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHh-----------------hHHHHHHHH-----------
Confidence 569999999999999999974 334456678887642110010 011111111
Q ss_pred Eeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhhhcCccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHH
Q 002800 192 VLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVINKMGNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQEL 270 (879)
Q Consensus 192 VlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l 270 (879)
|+ ..+++++.+-.+.-.+...|..+..|.++.- .+..
T Consensus 74 -----WdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S-------------------------------------Fea~ 111 (246)
T KOG4252|consen 74 -----WDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS-------------------------------------FEAT 111 (246)
T ss_pred -----HHhccchhHHHHHHHHhccccceEEEEecccHHH-------------------------------------HHHH
Confidence 22 2346778887777777778777777765321 1222
Q ss_pred HHHHHHHHhhcCCChhHHH
Q 002800 271 EHIGRQVIRKCKNLPLAVK 289 (879)
Q Consensus 271 ~~~~~~i~~~~~glPLai~ 289 (879)
.+.-+++.+.|+.+|..++
T Consensus 112 ~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 112 LEWYNKVQKETERIPTVFV 130 (246)
T ss_pred HHHHHHHHHHhccCCeEEe
Confidence 4456788889999998664
No 338
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.76 E-value=0.047 Score=58.49 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=37.2
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc----cceEEEEEee--cchHHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH----FSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
.-.++-|+|++|+|||++|.+++........ =..++||+.. ++..+ +.++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~r-l~~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPER-IEQMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHH-HHHHHHHcC
Confidence 5678889999999999999999863222111 1368888876 45544 345555544
No 339
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.75 E-value=0.022 Score=58.87 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=18.1
Q ss_pred cEEEEEcCCcchHHHHHHHHhcc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
+.|.|.|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999873
No 340
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.092 Score=57.02 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
..++.++|++|+||||+|..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 341
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.75 E-value=0.057 Score=54.23 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999876
No 342
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.75 E-value=0.037 Score=59.06 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=37.8
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccc----cccceEEEEEee--cchHHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVK----THFSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
.-+++-|+|.+|+|||+|+.+++-..... ..-..++|++.. |+..++ .+++++++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl-~~ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRI-VPIAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHH-HHHHHHcC
Confidence 56788899999999999999986432221 112458898876 565554 44666655
No 343
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.73 E-value=0.033 Score=60.42 Aligned_cols=97 Identities=22% Similarity=0.193 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC---
Q 002800 91 KNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS--- 167 (879)
Q Consensus 91 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~--- 167 (879)
+.++-+.|..+- ..-.++.|.|.+|+|||||+.+++.. ....-..++|++...+..++. .-+++++....
T Consensus 68 i~eLD~vLgGGi----~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~~qi~-~Ra~rlg~~~~~l~ 140 (372)
T cd01121 68 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESPEQIK-LRADRLGISTENLY 140 (372)
T ss_pred CHHHHHhhcCCc----cCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCHHHHH-HHHHHcCCCcccEE
Confidence 445555554432 24568899999999999999999873 333334577776553333322 22333331110
Q ss_pred -CCchhHHHHHHHHHHHhhCCeeEEEeeccc
Q 002800 168 -SDLVEIDTVLQQISHYIQGNRFLLVLDDVR 197 (879)
Q Consensus 168 -~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 197 (879)
....+.+.+.+.+. ..+.-++|+|.+.
T Consensus 141 l~~e~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 141 LLAETNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred EEccCcHHHHHHHHH---hcCCcEEEEcchH
Confidence 01123344433332 2355677888874
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.71 E-value=0.05 Score=56.47 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=48.3
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchH--HHHHHHHHHhccCC--CCCchhH-HHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEI--RIARAILESLKDGV--SSDLVEI-DTVLQQIS 181 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~--~~~~~i~~~l~~~~--~~~~~~~-~~~~~~l~ 181 (879)
..+++.++|++|+||||++..++. .....-..+.++... +... +-++..++..+... .....+. ....+.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 568999999999999999999887 333332346666655 3322 22333344433110 0011122 22233344
Q ss_pred HHhhCCeeEEEeecccc
Q 002800 182 HYIQGNRFLLVLDDVRS 198 (879)
Q Consensus 182 ~~l~~k~~LlVlDdv~~ 198 (879)
....+..=++++|-.-.
T Consensus 149 ~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHCCCCEEEEeCCCC
Confidence 43344445788888754
No 345
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.70 E-value=0.081 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...++.|+|++|+||||+|+.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 346
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.69 E-value=0.012 Score=67.93 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=57.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE 160 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~ 160 (879)
++++|.++.++.|...+... +.+.++|++|+||||+|+.+++. -...+++..+|+..+ .+...+++.++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np~~~~~~~~~~v~~ 101 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNPEDPNNPKIRTVPA 101 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCCCcchHHHHHHHHH
Confidence 46899999999888877643 25789999999999999999873 222346778898877 777888888887
Q ss_pred Hhc
Q 002800 161 SLK 163 (879)
Q Consensus 161 ~l~ 163 (879)
+.+
T Consensus 102 ~~G 104 (637)
T PRK13765 102 GKG 104 (637)
T ss_pred hcC
Confidence 666
No 347
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.67 E-value=0.07 Score=53.77 Aligned_cols=124 Identities=20% Similarity=0.193 Sum_probs=74.4
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-------cchHHHHHHHHHHhccCC------CCCchhHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-------YPEIRIARAILESLKDGV------SSDLVEID 174 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-------~~~~~~~~~i~~~l~~~~------~~~~~~~~ 174 (879)
.-.+++|+|..|+||||+|+.+.. ..+.-...+++... ....+-..++++.++... +.+....+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 345899999999999999999986 32322333333321 223344556666655211 12223344
Q ss_pred HHHHHHHHHhhCCeeEEEeeccccc-chHhHHHHHHhccC--CCCCcEEEEEccchhhhhhcC
Q 002800 175 TVLQQISHYIQGNRFLLVLDDVRSR-YFNYWQQLMYSLKS--GSEGSRILVTTCEENVINKMG 234 (879)
Q Consensus 175 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~~ 234 (879)
...-.+.+.|.-++=++|.|.--+. |...-.++...+.. ...|-..+..|-+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 4455677888899999999997653 22223344443332 234667777777877776654
No 348
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.66 E-value=0.046 Score=51.38 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=45.2
Q ss_pred EEcCCcchHHHHHHHHhcccccccccceEEEEEee-------cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhC
Q 002800 114 IVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-------YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQG 186 (879)
Q Consensus 114 I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 186 (879)
|+|+||+||||+|+.++. +|.. ..+++. ......-..+.+.+. .....+.+.+.+.+...+..
T Consensus 1 i~G~PgsGK~t~~~~la~------~~~~-~~is~~~llr~~~~~~s~~g~~i~~~l~---~g~~vp~~~v~~ll~~~l~~ 70 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK------RYGL-VHISVGDLLREEIKSDSELGKQIQEYLD---NGELVPDELVIELLKERLEQ 70 (151)
T ss_dssp EEESTTSSHHHHHHHHHH------HHTS-EEEEHHHHHHHHHHTTSHHHHHHHHHHH---TTSS--HHHHHHHHHHHHHS
T ss_pred CcCCCCCChHHHHHHHHH------hcCc-ceechHHHHHHHHhhhhHHHHHHHHHHH---hhccchHHHHHHHHHHHHhh
Confidence 689999999999999987 2332 223332 011122223333333 12233344555666666653
Q ss_pred C--eeEEEeecccccchHhHHHHHH
Q 002800 187 N--RFLLVLDDVRSRYFNYWQQLMY 209 (879)
Q Consensus 187 k--~~LlVlDdv~~~~~~~~~~l~~ 209 (879)
. .--+|||+.-.. .++.+.+..
T Consensus 71 ~~~~~g~ildGfPrt-~~Qa~~l~~ 94 (151)
T PF00406_consen 71 PPCNRGFILDGFPRT-LEQAEALEE 94 (151)
T ss_dssp GGTTTEEEEESB-SS-HHHHHHHHH
T ss_pred hcccceeeeeecccc-HHHHHHHHH
Confidence 2 456789999664 345555544
No 349
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.65 E-value=0.019 Score=59.65 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=44.7
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhc
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLK 163 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~ 163 (879)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+...+..++.+.+.+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESPEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCHHHHHHHHHH-cC
Confidence 3677999999999999999999998 566668889999988777777776665 44
No 350
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.64 E-value=0.17 Score=52.26 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhcc--CCC
Q 002800 91 KNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKD--GVS 167 (879)
Q Consensus 91 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~--~~~ 167 (879)
.+.+...+.... ...-++|+|+.|.|||||.+.++.. +. .....+++.-. -...+-..++...... ...
T Consensus 98 ~~~~l~~l~~~~-----~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNN-----RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCC-----CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhHHHHHHHhccccccc
Confidence 444444554332 3467899999999999999999972 22 22333443221 0000111223222210 110
Q ss_pred ----CCchhHHHHHHHHHHHhh-CCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhh
Q 002800 168 ----SDLVEIDTVLQQISHYIQ-GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVIN 231 (879)
Q Consensus 168 ----~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 231 (879)
.+..+.......+...+. ..+=++++|.+.. .+.+..+...+. .|..||+||-+..+..
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 011110111112222222 5788999999865 345666655553 4778999998765543
No 351
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.64 E-value=0.15 Score=50.64 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHhhCCeeEEEeeccc-ccchHhHHHHHHhccCC--CCCcEEEEEccchhhhhhcCc
Q 002800 171 VEIDTVLQQISHYIQGNRFLLVLDDVR-SRYFNYWQQLMYSLKSG--SEGSRILVTTCEENVINKMGN 235 (879)
Q Consensus 171 ~~~~~~~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iiiTtR~~~v~~~~~~ 235 (879)
...++..-.+.+.|-..+-+|+-|+=- ..|.+.-+.+...+... ..|..||+.|-++.+|..+..
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 344555666778888888899998742 22333444555555442 357889999999999987643
No 352
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.61 E-value=0.046 Score=64.88 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=72.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAI 158 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i 158 (879)
+.++|.+..+.++.+.+..-.. .+. -|.|+|..|+||+++|+.+++...- ...-||.+. .....+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~~~-pvli~Ge~GtGK~~~A~~ih~~s~r----~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---SSF-PVLLCGEEGVGKALLAQAIHNESER----AAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---cCC-CEEEECCCCcCHHHHHHHHHHhCCc----cCCCeEEEECCCCChHHHHHHh
Confidence 4689999888888887765432 133 3679999999999999999873211 112234333 3322222333
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC---C--------CcEEEEEccc
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS---E--------GSRILVTTCE 226 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iiiTtR~ 226 (879)
+.... +..... .....-....-.|+||+|.....+....+...+.... . ..|||.||..
T Consensus 397 fg~~~-~~~~~~--------~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDR-TDSENG--------RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCC-cCccCC--------CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 32221 000000 0000001234469999999887777777877775431 1 3467776654
No 353
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.58 E-value=0.047 Score=58.02 Aligned_cols=67 Identities=24% Similarity=0.184 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc----ccceEEEEEee--cchHHHHHHHHHHhc
Q 002800 92 NRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT----HFSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 92 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
..|-++|..+- ....++.|+|.+|+||||||..++....... .-..++|++.. ++..+ +.++++.+.
T Consensus 83 ~~lD~ll~gGi----~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 83 KELDKLLGGGI----ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred HHHHHHhcCCC----CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 44445554432 3567899999999999999999875222211 11356888776 45544 444555544
No 354
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.58 E-value=0.066 Score=57.28 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccc----cceEEEEEee--cchHHHHHHHHHHhc
Q 002800 92 NRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTH----FSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 92 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
..|-++|..+- ..-.++-|+|.+|+|||++|..++-....... -..++|++.. ++..+ +.+|++.++
T Consensus 110 ~~LD~lL~GG~----~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eR-l~qia~~~~ 182 (342)
T PLN03186 110 RELDKILEGGI----ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQR-LIQIAERFG 182 (342)
T ss_pred HHHHHhhcCCC----cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHH-HHHHHHHcC
Confidence 44445554432 35678889999999999999988753222111 1258899877 55554 456666654
No 355
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.58 E-value=0.14 Score=49.65 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=70.6
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---------------------------------------
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--------------------------------------- 148 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--------------------------------------- 148 (879)
.-.|++|+|+.|+|||||.+.+..-+.+. ...+|+...
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 34589999999999999999987522211 223333221
Q ss_pred -------cchHHHHHHHHHHhccCC-----CCCchhHHHHHHHHHHHhhCCeeEEEeeccccc-chHhHHHHHHhccC-C
Q 002800 149 -------YPEIRIARAILESLKDGV-----SSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR-YFNYWQQLMYSLKS-G 214 (879)
Q Consensus 149 -------~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~ 214 (879)
...++...++++.++... +.+....++..-.|.+.|.=++=++.+|..-+. |++--.++...... .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 112233333333333111 122233455555677888888889999999774 45544554444433 2
Q ss_pred CCCcEEEEEccchhhhhhc
Q 002800 215 SEGSRILVTTCEENVINKM 233 (879)
Q Consensus 215 ~~gs~iiiTtR~~~v~~~~ 233 (879)
..|-.+|+.|-....|..+
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 3566677777775555543
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.054 Score=51.30 Aligned_cols=116 Identities=21% Similarity=0.237 Sum_probs=63.6
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCC
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGN 187 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 187 (879)
.+++|+|..|.|||||++.+... . ......+++... ... ...+....+.. ..+....+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~--~~~~~~~~i~~--~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKL--PLEELRRRIGY--VPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccC--CHHHHHhceEE--EeeCCHHHHHHHHHHHHHhcC
Confidence 58899999999999999999873 2 233445554432 110 00111111110 000122233333455566667
Q ss_pred eeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhhh
Q 002800 188 RFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVINK 232 (879)
Q Consensus 188 ~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~ 232 (879)
+=++++|+... .|......+...+... ..+..||++|.+.+....
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88899999864 2334444444444321 125678888877665554
No 357
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.56 E-value=0.011 Score=70.61 Aligned_cols=182 Identities=16% Similarity=0.144 Sum_probs=84.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCC------CCCchhHHHHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGV------SSDLVEIDTVLQQIS 181 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~~l~ 181 (879)
.++++|+|+.|.||||+.+.+.-.. + .....++|.+. ......+.++...++... ..-.....++...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l--~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-L--MFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-H--HHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 4688999999999999999987520 0 01111122221 000011111111111000 000011222222222
Q ss_pred HHhhCCeeEEEeecccc-cchHhHHHH----HHhccCCCCCcEEEEEccchhhhhhcCccce---EeCCCCCHHhHHHHH
Q 002800 182 HYIQGNRFLLVLDDVRS-RYFNYWQQL----MYSLKSGSEGSRILVTTCEENVINKMGNTRM---ISLGTLSEEASWSLF 253 (879)
Q Consensus 182 ~~l~~k~~LlVlDdv~~-~~~~~~~~l----~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~---~~l~~L~~~e~~~Lf 253 (879)
. + ..+-|+++|..-. .+......+ ...+. ..|+.+|+||-..++......... ..+. ++.+ ... |
T Consensus 399 ~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p 471 (771)
T TIGR01069 399 K-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-P 471 (771)
T ss_pred h-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-e
Confidence 2 2 4789999999865 233333333 23332 357899999999876543221111 1110 1111 000 1
Q ss_pred HHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCHHHHHHHHh
Q 002800 254 CLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGEWLNVLK 309 (879)
Q Consensus 254 ~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~ 309 (879)
.+-...+.+ . ...|-+|++++ |+|-.|.--|..+... ...++..+++
T Consensus 472 -~Ykl~~G~~-g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 472 -TYKLLKGIP-G-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred -EEEECCCCC-C-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 111111221 1 12366777766 8888888888777543 2234444443
No 358
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.56 E-value=0.0078 Score=53.29 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEcCCcchHHHHHHHHhcccccccccc
Q 002800 112 ISIVGMDGSGKTTLSRQVFDIDAVKTHFS 140 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 140 (879)
|.|+|.+|+||||+|+.++. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 5666664
No 359
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.047 Score=60.80 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+++|+|++|+||||++..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.55 E-value=0.14 Score=48.58 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=64.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEE---EEEee--cchHHHHHHHHHHhc-cCCC------CCc---hhH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRI---WVSAS--YPEIRIARAILESLK-DGVS------SDL---VEI 173 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~s--~~~~~~~~~i~~~l~-~~~~------~~~---~~~ 173 (879)
...|-|++..|.||||.|..++- +...+=-.++ |+... ......+....-.+. .+.. ... ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35778888899999999998876 3333222222 23222 222333333211110 0110 001 112
Q ss_pred HHHHHHHHHHhhCCee-EEEeeccccc---chHhHHHHHHhccCCCCCcEEEEEccch
Q 002800 174 DTVLQQISHYIQGNRF-LLVLDDVRSR---YFNYWQQLMYSLKSGSEGSRILVTTCEE 227 (879)
Q Consensus 174 ~~~~~~l~~~l~~k~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 227 (879)
....+..++.+...+| |||||.+-.. ..-..+++...+....++..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2334445555655555 9999998532 1223456677776667788999999985
No 361
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.55 E-value=0.17 Score=55.89 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 91 KNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 91 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.++|.+.+...... ......++.++|++|+||||.|..++.
T Consensus 78 ~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 78 HEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred HHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 44555656443210 122467899999999999999988887
No 362
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.17 Score=50.06 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=70.5
Q ss_pred CceeeehhhHHHHHHHHhcCCC-------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESS-------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRI 154 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 154 (879)
+++=|-.+++++|.+...-+-- -+-...+=|.++|++|.|||-+|++|+| +....| +.+-
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irvi------ 243 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVI------ 243 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eeeh------
Confidence 3556677788887775543210 0112445577999999999999999999 544444 3221
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHhhC-CeeEEEeeccccc--------------chHhHHHHHHhccCCCC--C
Q 002800 155 ARAILESLKDGVSSDLVEIDTVLQQISHYIQG-NRFLLVLDDVRSR--------------YFNYWQQLMYSLKSGSE--G 217 (879)
Q Consensus 155 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~--------------~~~~~~~l~~~l~~~~~--g 217 (879)
-.++.+..- .+.......+.+.-+. |-+++.||.++-. -+...-++...+..+.+ .
T Consensus 244 gselvqkyv-------gegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgn 316 (435)
T KOG0729|consen 244 GSELVQKYV-------GEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGN 316 (435)
T ss_pred hHHHHHHHh-------hhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCC
Confidence 112222211 1122334444444444 5578888988431 12233344555554432 3
Q ss_pred cEEEEEccchhh
Q 002800 218 SRILVTTCEENV 229 (879)
Q Consensus 218 s~iiiTtR~~~v 229 (879)
-+|++.|-.++.
T Consensus 317 ikvlmatnrpdt 328 (435)
T KOG0729|consen 317 IKVLMATNRPDT 328 (435)
T ss_pred eEEEeecCCCCC
Confidence 577877765543
No 363
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.54 E-value=0.3 Score=50.65 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=76.8
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-----------ccceEEEEEeecchHHHHHHH
Q 002800 90 EKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-----------HFSKRIWVSASYPEIRIARAI 158 (879)
Q Consensus 90 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----------~f~~~~wv~~s~~~~~~~~~i 158 (879)
.-++|...+..+. -.....++|+.|+||+++|..++...--.. ..+...|+.-.
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~---------- 69 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ---------- 69 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC----------
Confidence 4466777776653 234567999999999999999886311100 01111121100
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhh-----CCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccch-hhhhh
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQ-----GNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEE-NVINK 232 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~ 232 (879)
+. ...-.+++. ..+.+.+. ++.=++|+|+++....+.+..+...+....+++.+|++|.+. .+...
T Consensus 70 ------~~-~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 70 ------GK-GRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ------CC-CCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 00 000112222 22233332 444588999999988889999999998887888877777764 33322
Q ss_pred -cCccceEeCCCC
Q 002800 233 -MGNTRMISLGTL 244 (879)
Q Consensus 233 -~~~~~~~~l~~L 244 (879)
......+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 223456666655
No 364
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.53 E-value=0.29 Score=49.94 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=90.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAI 158 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i 158 (879)
.++|+|-..- +++...+.... ..-+.+.|+|+.|+|||+-++.+++. .+..+-+..+ +....+...+
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILII 139 (297)
T ss_pred cccccccchh-HhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHH
Confidence 3467765443 22333333322 12337889999999999999999872 2222223444 5555555555
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhhhhhcCccce
Q 002800 159 LESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENVINKMGNTRM 238 (879)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~ 238 (879)
..... . ............+...+.+..=++++|+.+......++.+.......+-|-..+=+-| .
T Consensus 140 ~~~~~-~--~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~pr------------L 204 (297)
T COG2842 140 CAAAF-G--ATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPR------------L 204 (297)
T ss_pred HHHHh-c--ccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChH------------H
Confidence 55544 2 2233344555666666788889999999999877888888766554443322221222 1
Q ss_pred EeCCCCCHHhHHHHHHHHhccCCC
Q 002800 239 ISLGTLSEEASWSLFCLVAFYWRR 262 (879)
Q Consensus 239 ~~l~~L~~~e~~~Lf~~~a~~~~~ 262 (879)
.....=+..+...+|.+..++...
T Consensus 205 ~~~l~~~~~~~~rl~srv~v~~~~ 228 (297)
T COG2842 205 FKVLRRPEDELSRLYSRVRVGKLL 228 (297)
T ss_pred HhccccchHHHHHHHHHhhhHhhh
Confidence 112222445666777777665543
No 365
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.53 E-value=0.009 Score=54.38 Aligned_cols=20 Identities=45% Similarity=0.831 Sum_probs=18.8
Q ss_pred EEEEcCCcchHHHHHHHHhc
Q 002800 112 ISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~ 131 (879)
|+|.|++|+||||+|+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 366
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.033 Score=50.97 Aligned_cols=42 Identities=33% Similarity=0.486 Sum_probs=30.8
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLK 163 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~ 163 (879)
+|.|-|++|+||||+|+.+++. ..-.| |+ .-.++++|++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~-----vs----aG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL-----VS----AGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce-----ee----ccHHHHHHHHHcC
Confidence 6889999999999999999983 22221 22 2467778888776
No 367
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.51 E-value=0.078 Score=54.64 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=18.7
Q ss_pred EEEEcCCcchHHHHHHHHhc
Q 002800 112 ISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~ 131 (879)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 368
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.50 E-value=0.0056 Score=60.65 Aligned_cols=83 Identities=27% Similarity=0.174 Sum_probs=40.1
Q ss_pred ccCCCCCEEecccC--CCCcccCcccccCCCCcEEeccCcccccccchh---hhcccccceEecCCcccccCCc----cC
Q 002800 519 RKLLHLRYLNLSRN--SKIAELPESLCDLYNLETMELSWCISLKRLPQR---MGQLINLWHLVNDGTSLSYMPK----GI 589 (879)
Q Consensus 519 ~~L~~Lr~L~L~~~--~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~l~~lp~----~i 589 (879)
..|++|++|.++.| +....++...-++++|++|++++| .+.. ++. +..+.+|..|++.+|....+-. .+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 34556666666666 323344444445566666666666 3332 111 3445555566666554332211 13
Q ss_pred CCCCCCCcCCceee
Q 002800 590 ERLTCLRTLNEFIV 603 (879)
Q Consensus 590 ~~l~~L~~L~~~~~ 603 (879)
.-+++|..|+...+
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 33455555554443
No 369
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.47 E-value=0.035 Score=55.50 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=59.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC------CCchhHHHHHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS------SDLVEIDTVLQQISH 182 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~l~~ 182 (879)
.+++.|+|+.|.||||+.+.+...... . +...|+.+.........++...+..... .-..+...+...+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l-- 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL-- 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH--
Confidence 478889999999999999998742111 1 1122222210000111222222221110 0011122222211
Q ss_pred HhhCCeeEEEeeccccc-chHhH----HHHHHhccCC-CCCcEEEEEccchhhhhhc
Q 002800 183 YIQGNRFLLVLDDVRSR-YFNYW----QQLMYSLKSG-SEGSRILVTTCEENVINKM 233 (879)
Q Consensus 183 ~l~~k~~LlVlDdv~~~-~~~~~----~~l~~~l~~~-~~gs~iiiTtR~~~v~~~~ 233 (879)
.+..++-|+++|....- +..+. ..+...+... ..+..+|+||-+.+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 12467899999998652 22221 1233334332 2345899999998776654
No 370
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.42 Score=46.94 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=35.4
Q ss_pred CceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcc
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
.++=|.|-.++++.+...-+-.+ +-...+=|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 35667777777777665432110 1224556779999999999999999984
No 371
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.44 E-value=0.01 Score=47.07 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEEEcCCcchHHHHHHHHhcc
Q 002800 111 IISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
+++|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 372
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.06 Score=52.22 Aligned_cols=120 Identities=18% Similarity=0.097 Sum_probs=61.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHHhcc--CCC--C-C----------ch
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILESLKD--GVS--S-D----------LV 171 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~l~~--~~~--~-~----------~~ 171 (879)
-.+++|+|+.|.|||||++.++.. .......+.+... .....-.....+.+.. ... . . ..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 358999999999999999999862 1222333333221 1100000011111110 000 0 0 11
Q ss_pred hHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-C-CCcEEEEEccchhhhh
Q 002800 172 EIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-S-EGSRILVTTCEENVIN 231 (879)
Q Consensus 172 ~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~-~gs~iiiTtR~~~v~~ 231 (879)
..+...-.+...+..++=++++|+--. .|....+.+...+... . .|..||++|.+.+...
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 123333345666667778899998644 3444445555544432 1 2567888887765544
No 373
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.046 Score=56.21 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee--cchHHHHHHHHHH-hcc---CCCCCchhHHHHHHHH
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS--YPEIRIARAILES-LKD---GVSSDLVEIDTVLQQI 180 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s--~~~~~~~~~i~~~-l~~---~~~~~~~~~~~~~~~l 180 (879)
+.-+++=|+|+.|+||||+|.+++-. ....-..++|++.- +++.. .++++.. +.. ..+.....-..+++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r-~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPER-AKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHH-HHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46788999999999999999998863 33334478999877 44433 3444444 321 1122222233334444
Q ss_pred HHHhhCCeeEEEeecccc
Q 002800 181 SHYIQGNRFLLVLDDVRS 198 (879)
Q Consensus 181 ~~~l~~k~~LlVlDdv~~ 198 (879)
......+--|+|+|.+-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 444344456889998854
No 374
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.38 E-value=0.15 Score=47.78 Aligned_cols=21 Identities=38% Similarity=0.763 Sum_probs=19.3
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 375
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.38 E-value=0.12 Score=51.15 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=62.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhccc--c-cccc--cc--------------e-EEEEEeecc--hHHHHHHHHHHhccCC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDID--A-VKTH--FS--------------K-RIWVSASYP--EIRIARAILESLKDGV 166 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~--~-~~~~--f~--------------~-~~wv~~s~~--~~~~~~~i~~~l~~~~ 166 (879)
-.+++|+|..|.|||||.+.++... . ..+. |+ . +.++.-... ......+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~---- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV---- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc----
Confidence 4589999999999999999988741 0 1110 00 0 111111100 000111111111
Q ss_pred CCCchhHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhh
Q 002800 167 SSDLVEIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVIN 231 (879)
Q Consensus 167 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~ 231 (879)
.......+...-.+.+.+..++=++++|+--. .|....+.+...+... ..|..||++|.+...+.
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 11222233334445666667788999999754 3344445554444432 23667888888876655
No 376
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.37 E-value=0.11 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.304 Sum_probs=20.3
Q ss_pred cEEEEEcCCcchHHHHHHHHhc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999875
No 377
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.37 E-value=0.15 Score=52.96 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=64.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCC-----C---chhHHHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSS-----D---LVEIDTVLQQI 180 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~-----~---~~~~~~~~~~l 180 (879)
-.++.|-|.+|+|||++|..++.+..... -..++|++...+..++...++.... +... . ..+.+.+ ...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~~~~l~~R~la~~s-~v~~~~i~~g~l~~~e~~~~-~~~ 95 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMSEEELAARLLARLS-GVPYNKIRSGDLSDEEFERL-QAA 95 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS-HHHHHHHHHHHHH-TSTHHHHHCCGCHHHHHHHH-HHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhh-cchhhhhhccccCHHHHHHH-HHH
Confidence 44788899999999999999998533322 2567788777777888888888776 3321 1 1222222 233
Q ss_pred HHHhhCCeeEEEeecccccchHhHHHHHHhccCCCCCcEEEEE
Q 002800 181 SHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVT 223 (879)
Q Consensus 181 ~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiT 223 (879)
...+.+.+ +++++..+...++.......+.....+..+|+.
T Consensus 96 ~~~l~~~~--l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~I 136 (259)
T PF03796_consen 96 AEKLSDLP--LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFI 136 (259)
T ss_dssp HHHHHTSE--EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred HHHHhhCc--EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEe
Confidence 44556666 444555554445555544444433245555544
No 378
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.36 E-value=0.011 Score=58.21 Aligned_cols=21 Identities=52% Similarity=0.801 Sum_probs=20.1
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
||+|.|++|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
No 379
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.33 E-value=0.01 Score=58.67 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=66.9
Q ss_pred ccccCCCCccEEEeccCCCccc-ccchhhhhccCCcccEEEcCCCCCc-----ccccccccCcccccCCCCCEEecccCC
Q 002800 460 TSVYNRKRLRSLVVERGEGFMT-GINLSALFDNLTCLRSLDLSNQDNG-----FYNVIKRVPRGIRKLLHLRYLNLSRNS 533 (879)
Q Consensus 460 ~~~~~~~~LrsL~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~-----~~~~l~~lp~~i~~L~~Lr~L~L~~~~ 533 (879)
..+..+..+..+++++|....- ...+...+.+-++|++-+++...-+ ....+.-+...+-++++|+..+||.|-
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3445578899999999842211 2334556778899999999871100 000111123456788999999999998
Q ss_pred CCcccCc----ccccCCCCcEEeccCccccccc
Q 002800 534 KIAELPE----SLCDLYNLETMELSWCISLKRL 562 (879)
Q Consensus 534 ~i~~lP~----~i~~L~~L~~L~L~~~~~l~~l 562 (879)
.-...|+ -|+.-.+|.+|.+++| .++.+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~ 135 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLGPI 135 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC-CCCcc
Confidence 4334553 4677899999999998 56543
No 380
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.32 E-value=0.087 Score=51.31 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=61.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee----cchHHHHHHHHHHhccCC------CCC---------
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS----YPEIRIARAILESLKDGV------SSD--------- 169 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~i~~~l~~~~------~~~--------- 169 (879)
-.+++|+|..|.|||||++.++.... .....+++... .+.....+.-+..+. .. ...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~-q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDAIRAGIAYVP-EDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHHHHhCCeEEec-CCcccCcccCCCcHHHHHHH
Confidence 34789999999999999999986321 22233343321 111111111000000 00 000
Q ss_pred ---chhHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhhh
Q 002800 170 ---LVEIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVINK 232 (879)
Q Consensus 170 ---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~ 232 (879)
....+...-.+...+-.++=++++|+--. .|....+.+...+... ..|..||++|.+......
T Consensus 102 ~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 00111122234555667778999999744 2444555555554432 236778888888654433
No 381
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.31 E-value=0.096 Score=55.99 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=37.2
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc----cceEEEEEee--cchHHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH----FSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
.-+++-|+|.+|+|||+++.+++........ =..++||+.. ++..+ +.++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~r-l~~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPER-IMQMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 5678899999999999999999864322111 1268899876 45544 345555544
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.30 E-value=0.09 Score=59.80 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhc
Q 002800 91 KNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLK 163 (879)
Q Consensus 91 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~ 163 (879)
+..+-++|..+- ..-+++.|.|++|+|||||+.++... ...+=+.++++....+..++.+.+ ++++
T Consensus 249 i~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs~~~i~~~~-~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEESRAQLLRNA-YSWG 314 (484)
T ss_pred hHhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCHHHHHHHH-HHcC
Confidence 455656565432 36678899999999999999999873 333335577777656666665554 4443
No 383
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.30 E-value=0.016 Score=56.57 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=57.1
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHhhC--
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS--SDLVEIDTVLQQISHYIQG-- 186 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l~~-- 186 (879)
++.|+|+.|.||||+.+.+.-.. +-.+-. .+|.+.........+++..+..... ........-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G--~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~ 77 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIG--SFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNAT 77 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhC--CCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCC
Confidence 46799999999999999998421 111111 1222210000001111111110000 0111122222234444443
Q ss_pred CeeEEEeeccccc-chHhHH----HHHHhccCCCCCcEEEEEccchhhhhhc
Q 002800 187 NRFLLVLDDVRSR-YFNYWQ----QLMYSLKSGSEGSRILVTTCEENVINKM 233 (879)
Q Consensus 187 k~~LlVlDdv~~~-~~~~~~----~l~~~l~~~~~gs~iiiTtR~~~v~~~~ 233 (879)
++-++++|..-.. +...-. .+...+.. ..+..+|++|.+.++...+
T Consensus 78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 7889999998542 222112 22233322 2467899999998776654
No 384
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.0018 Score=64.12 Aligned_cols=99 Identities=24% Similarity=0.197 Sum_probs=56.7
Q ss_pred CCCccEEEeccCCCcccccchhhhhccCCcccEEEcCCCCCcccccccccCcccccCCCCCEEecccCCCCcccCc--cc
Q 002800 465 RKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRVPRGIRKLLHLRYLNLSRNSKIAELPE--SL 542 (879)
Q Consensus 465 ~~~LrsL~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~~i~~lP~--~i 542 (879)
+.+.+-|++.++. +. --....+|+.|.||.|+- |.|..+. .+..+++|+.|.|+.|. |..+.+ -+
T Consensus 18 l~~vkKLNcwg~~---L~--DIsic~kMp~lEVLsLSv------NkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---LD--DISICEKMPLLEVLSLSV------NKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCCC---cc--HHHHHHhcccceeEEeec------cccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHH
Confidence 3445556665552 11 123356777777777776 6666653 36677777777777776 655542 35
Q ss_pred ccCCCCcEEeccCcccccccch-----hhhcccccceEe
Q 002800 543 CDLYNLETMELSWCISLKRLPQ-----RMGQLINLWHLV 576 (879)
Q Consensus 543 ~~L~~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 576 (879)
.+|++|++|.|..|.-...-+. .+.-|++|+.||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5677777777765543333322 233455555554
No 385
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.27 E-value=0.25 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.8
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|.++|++|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 386
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.26 E-value=0.021 Score=59.25 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 92 NRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 92 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
..+++.+... +. -|.++|+.|+|||++++.+..
T Consensus 23 ~~ll~~l~~~------~~-pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN------GR-PVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC------TE-EEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc------CC-cEEEECCCCCchhHHHHhhhc
Confidence 4555555543 23 457999999999999999876
No 387
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.26 E-value=0.095 Score=49.99 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=18.2
Q ss_pred EEEEcCCcchHHHHHHHHhc
Q 002800 112 ISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~ 131 (879)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 388
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.26 E-value=0.032 Score=56.66 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=51.7
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccc-cceEEEEEeecchHHHHHHHHHHhcc-------C-C------CCC---
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTH-FSKRIWVSASYPEIRIARAILESLKD-------G-V------SSD--- 169 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~i~~~l~~-------~-~------~~~--- 169 (879)
.-+++.|.|.+|+|||++|.++... -... =+.++|++...+..++.+++- +++- . . ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEPPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCCHHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 5678999999999999999998762 2223 345778887655555555533 3320 0 0 000
Q ss_pred --chhHHHHHHHHHHHhhC-CeeEEEeeccc
Q 002800 170 --LVEIDTVLQQISHYIQG-NRFLLVLDDVR 197 (879)
Q Consensus 170 --~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 197 (879)
..+.+.+...+.+.++. +.-.+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 23455566666665543 44677888763
No 389
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.24 E-value=0.019 Score=60.15 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=44.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
..|+|.++.++++++.+...+...+..-+|+.++|+.|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999877655566789999999999999999999876
No 390
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.22 E-value=0.055 Score=53.73 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=47.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-----------cchHH--HHHHHHHHhccCCCCCc----
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-----------YPEIR--IARAILESLKDGVSSDL---- 170 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-----------~~~~~--~~~~i~~~l~~~~~~~~---- 170 (879)
....|.++||+|+||||..+.++.. +...+..-.-|... -|+++ -.++..++...+.+.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 4567788999999999999999874 33333221112211 23333 25667777664444433
Q ss_pred ----hhHHHHHHHHHHHhhCCeeEEE
Q 002800 171 ----VEIDTVLQQISHYIQGNRFLLV 192 (879)
Q Consensus 171 ----~~~~~~~~~l~~~l~~k~~LlV 192 (879)
...++.+..+.+.-..-+|.||
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~li 121 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLI 121 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEE
Confidence 2345556666665444455544
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.20 E-value=0.16 Score=47.67 Aligned_cols=21 Identities=38% Similarity=0.792 Sum_probs=19.1
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 367899999999999999987
No 392
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.09 Score=55.78 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC-
Q 002800 89 GEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS- 167 (879)
Q Consensus 89 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~- 167 (879)
..+.++-+.|..+-. .-.++.|-|-||||||||..+++. +....- .+.+|+...+..++ +--+.+++....
T Consensus 77 tg~~EldRVLGGG~V----~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Qi-klRA~RL~~~~~~ 148 (456)
T COG1066 77 TGIEELDRVLGGGLV----PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQI-KLRADRLGLPTNN 148 (456)
T ss_pred CChHHHHhhhcCCcc----cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHHH-HHHHHHhCCCccc
Confidence 445666666765432 556899999999999999999998 455444 67777654333322 222344431111
Q ss_pred ---CCchhHHHHHHHHHHHhhCCeeEEEeecccc
Q 002800 168 ---SDLVEIDTVLQQISHYIQGNRFLLVLDDVRS 198 (879)
Q Consensus 168 ---~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 198 (879)
....+.+...+.+.+ .++-++|+|-+..
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 122344444444443 6788999999865
No 393
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.18 E-value=0.016 Score=58.09 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=22.3
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 394
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.16 E-value=0.046 Score=59.04 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=49.3
Q ss_pred CceeeehhhHHHHHHHHhcC--------CCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc---ceEEEEEee--
Q 002800 82 SQVIVRDGEKNRLLNLLLCE--------SSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF---SKRIWVSAS-- 148 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s-- 148 (879)
..+||.++.++.+.-.+... .-......+-|.++|++|+|||++|+.++. .....| +..-|+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 46999999999887777642 000111235688999999999999999998 333333 222122111
Q ss_pred -cchHHHHHHHHHHh
Q 002800 149 -YPEIRIARAILESL 162 (879)
Q Consensus 149 -~~~~~~~~~i~~~l 162 (879)
.+..++++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 35556666665554
No 395
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.16 E-value=0.13 Score=49.46 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=65.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-----cchHHHHHHH--HHHhccCCC------CCc---hh
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-----YPEIRIARAI--LESLKDGVS------SDL---VE 172 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-----~~~~~~~~~i--~~~l~~~~~------~~~---~~ 172 (879)
...|.|+|..|-||||.|...+- +...+=-.+..+..- ......++.+ +.-...+.. ... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 45788999999999999998876 333332222223222 2233333321 000000111 001 11
Q ss_pred HHHHHHHHHHHhhCCee-EEEeeccccc---chHhHHHHHHhccCCCCCcEEEEEccch
Q 002800 173 IDTVLQQISHYIQGNRF-LLVLDDVRSR---YFNYWQQLMYSLKSGSEGSRILVTTCEE 227 (879)
Q Consensus 173 ~~~~~~~l~~~l~~k~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 227 (879)
..+..+..++.+...+| +||||.+-.. ..-..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22334445566655555 9999998542 1224566777777777788999999984
No 396
>PRK14528 adenylate kinase; Provisional
Probab=95.13 E-value=0.13 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.6
Q ss_pred cEEEEEcCCcchHHHHHHHHhc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+.|.|.|++|+||||+|+.++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999976
No 397
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.13 E-value=0.0015 Score=75.00 Aligned_cols=242 Identities=22% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCCCEEecccCCCCcc--cCcccccCCCCcEEeccC-cccccccc----hhhhcccccceEecCCcc-cc--cCCccCC
Q 002800 521 LLHLRYLNLSRNSKIAE--LPESLCDLYNLETMELSW-CISLKRLP----QRMGQLINLWHLVNDGTS-LS--YMPKGIE 590 (879)
Q Consensus 521 L~~Lr~L~L~~~~~i~~--lP~~i~~L~~L~~L~L~~-~~~l~~lp----~~i~~L~~L~~L~l~~~~-l~--~lp~~i~ 590 (879)
++.|+.|.+.++..+.. +-......++|+.|++++ |......+ .....+.+|+.|+++.+. ++ .+..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Q ss_pred CCCCCCcCCceeecccCCCCcccCcccccccccCCCeeEEcccCCCChhcccccccCCccccceEEEEeccCCCCCCCCC
Q 002800 591 RLTCLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNK 670 (879)
Q Consensus 591 ~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 670 (879)
.+++|++|....+...+. ..+......+++|+.|+++++.. .
T Consensus 267 ~c~~L~~L~l~~c~~lt~-------------------------------~gl~~i~~~~~~L~~L~l~~c~~-------~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTD-------------------------------EGLVSIAERCPSLRELDLSGCHG-------L 308 (482)
T ss_pred hCCCcceEccCCCCccch-------------------------------hHHHHHHHhcCcccEEeeecCcc-------c
Q ss_pred chHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCCCCCCCCCCCccceeeccccccceEecccc
Q 002800 671 DDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPRLGELPSLESLTVRNMRRLEKVGNEF 750 (879)
Q Consensus 671 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~ 750 (879)
.+.........+++|+.|.+..... ++.++.+.+..+..... ..+..+.+.+|+.++...-..
T Consensus 309 ~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~-------d~~~~~~~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 309 TDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTS-------DDLAELILRSCPKLTDLSLSY 371 (482)
T ss_pred hHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCc-------hhHhHHHHhcCCCcchhhhhh
Q ss_pred cCCchhhhccccccccccccCCCCCCcccCCCCCCCcCCCccceeeeccCccc-cccccccccCCCCCCCCCCccCeeec
Q 002800 751 LGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGW-KEWKYSVTTSTWPHDRLMPRLCSLTI 829 (879)
Q Consensus 751 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~p~L~~L~l 829 (879)
.+ .. .....+.+.+|+.+ ..+.. ....++.|+.|.+
T Consensus 372 ~~-~~----------------------------------~~~~~~~l~gc~~l~~~l~~--------~~~~~~~l~~L~l 408 (482)
T KOG1947|consen 372 CG-IS----------------------------------DLGLELSLRGCPNLTESLEL--------RLCRSDSLRVLNL 408 (482)
T ss_pred hh-cc----------------------------------CcchHHHhcCCcccchHHHH--------HhccCCccceEec
Q ss_pred cCCCCCcCCCCCC----CCCccEEEEeecCchHHh
Q 002800 830 GFCPKLETLPDDY----LPQLLDLKIFSCPKLEER 860 (879)
Q Consensus 830 ~~C~~L~~lp~~~----l~~L~~L~i~~c~~l~~~ 860 (879)
..|...+.--... ...+..+.+.+|+.+...
T Consensus 409 ~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 409 SDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccCccccccchHHHhhhhhccccCCccCcccccch
No 398
>PRK06547 hypothetical protein; Provisional
Probab=95.12 E-value=0.026 Score=54.08 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=22.2
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|+|.|++|+||||+|+.+..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 677899999999999999999987
No 399
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.12 E-value=0.037 Score=64.30 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=53.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-ccceEEEEEee-cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-HFSKRIWVSAS-YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s-~~~~~~~~~i~ 159 (879)
++++|.++.++.+...+.... -+.++|++|+||||+|+.+++ .+.. .|...+++.-+ .+..++++.++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--------~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--------NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPEDPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--------CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCCCCchHHHHHHH
Confidence 478999998888888776531 455999999999999999997 3433 34444455444 66677788888
Q ss_pred HHhc
Q 002800 160 ESLK 163 (879)
Q Consensus 160 ~~l~ 163 (879)
..++
T Consensus 88 ~~~g 91 (608)
T TIGR00764 88 AGEG 91 (608)
T ss_pred Hhhc
Confidence 7776
No 400
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.12 E-value=0.016 Score=57.78 Aligned_cols=24 Identities=46% Similarity=0.686 Sum_probs=22.1
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|+|+|++|+||||||+.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999986
No 401
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.11 E-value=0.15 Score=51.56 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccC--CCCCcEEEEEccchhhhhhcC
Q 002800 172 EIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKS--GSEGSRILVTTCEENVINKMG 234 (879)
Q Consensus 172 ~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~~ 234 (879)
..+...-.+.+.|.++.=+++||.=-+ .|...--++...+.. ...|.-||+++-+.+.|....
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 345555667777888888888997433 122222223333332 235677999999987776644
No 402
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.22 Score=56.59 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=97.3
Q ss_pred ccCCCceeeehhhHHHHH---HHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cc
Q 002800 78 VVDSSQVIVRDGEKNRLL---NLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YP 150 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~---~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~ 150 (879)
.+...++.|.|+.++++. +.|.++... +..-.+=|.++|++|.|||.||++++.. ..-.| .+.| .+
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE--A~VPF-----f~iSGS~ 218 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISGSD 218 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc--cCCCc-----eeccchh
Confidence 345568899887665554 555544311 2233556789999999999999999984 33233 2222 11
Q ss_pred hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc----------chHhHHH----HHHhccCCC-
Q 002800 151 EIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR----------YFNYWQQ----LMYSLKSGS- 215 (879)
Q Consensus 151 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~----l~~~l~~~~- 215 (879)
.++.+- +. ......+...+..+.-++.+++|.++-. ..+++++ +......++
T Consensus 219 -------FVemfV-Gv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 219 -------FVEMFV-GV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred -------hhhhhc-CC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 111111 11 1223334445555566899999988542 1234444 333333333
Q ss_pred -CCcEEEEEccchhhhhhc-----CccceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChh
Q 002800 216 -EGSRILVTTCEENVINKM-----GNTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPL 286 (879)
Q Consensus 216 -~gs~iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPL 286 (879)
.|-.|+..|-.++|.... .-++.+.+..-+-..-.+.++-++...... + .-++ ..|++.+-|.--
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~-~Vdl----~~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-E-DVDL----KKIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-C-cCCH----HHHhhhCCCccc
Confidence 333344444445554321 235667777766677777777666544332 1 1112 226666666543
No 403
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.49 Score=54.28 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=86.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCC------CCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHH
Q 002800 81 SSQVIVRDGEKNRLLNLLLCESS------EKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIR 153 (879)
Q Consensus 81 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~ 153 (879)
=+++=|-++.+.+|.+-+.-+-. .+-...+=|.++|++|.|||-||++|+. +..-. |++|- +..
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL~-----FlSVKGPEL-- 741 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSLN-----FLSVKGPEL-- 741 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hceee-----EEeecCHHH--
Confidence 34677888888888886654211 0112345577999999999999999998 32222 34443 111
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeeccccc---------chHhHHHHHHh----ccCC----CC
Q 002800 154 IARAILESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSR---------YFNYWQQLMYS----LKSG----SE 216 (879)
Q Consensus 154 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~----l~~~----~~ 216 (879)
+ -..++ +..+.+.+...+.-..++++|.||.+++. +-...+.+... +..- ..
T Consensus 742 -L---NMYVG-------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 742 -L---NMYVG-------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred -H---HHHhc-------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 1 11122 12333444444444578999999999873 12234443333 3222 22
Q ss_pred CcEEEEEccchhhhhh--cC---ccceEeCCCCCHHhHHHHHH
Q 002800 217 GSRILVTTCEENVINK--MG---NTRMISLGTLSEEASWSLFC 254 (879)
Q Consensus 217 gs~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~ 254 (879)
+.=||=.|-.++..+. +. -+..+.|++=+++++..=..
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL 853 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVL 853 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHH
Confidence 3334545555554332 11 25677888877777654333
No 404
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.09 E-value=0.027 Score=54.75 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=32.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
++++|.+..+..+.-..... .-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 57899988888887766643 2477999999999999999875
No 405
>PTZ00494 tuzin-like protein; Provisional
Probab=95.08 E-value=0.59 Score=50.33 Aligned_cols=169 Identities=11% Similarity=0.121 Sum_probs=101.1
Q ss_pred ccCCCceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHH
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARA 157 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 157 (879)
...++.+|.|+++-..+.+.|.+-+. ...+++.+.|.-|.||++|.+.....+. -..++|.+. ..++-++.
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVR-g~EDtLrs 437 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVG-GTEDTLRS 437 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEec-CCcchHHH
Confidence 34567899999999988888887643 5889999999999999999999876322 234455554 44556777
Q ss_pred HHHHhccCCCCCchh-HHHHHHH---HHHHhhCCeeEEEeecccccc-hHhHHHHHHhccCCCCCcEEEEEccchhhhhh
Q 002800 158 ILESLKDGVSSDLVE-IDTVLQQ---ISHYIQGNRFLLVLDDVRSRY-FNYWQQLMYSLKSGSEGSRILVTTCEENVINK 232 (879)
Q Consensus 158 i~~~l~~~~~~~~~~-~~~~~~~---l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 232 (879)
+++.++-.......| ++-+.+. -+....++.=+||+-==+-.+ ...+.+ ...+.....-++|++----+.+...
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE-~vaLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGE-VVSLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHH-HHHHHccchhheeeeechHhhhchh
Confidence 888887222111111 2222222 222334555566653222110 011111 1234445566788876554433211
Q ss_pred ---cCccceEeCCCCCHHhHHHHHHHH
Q 002800 233 ---MGNTRMISLGTLSEEASWSLFCLV 256 (879)
Q Consensus 233 ---~~~~~~~~l~~L~~~e~~~Lf~~~ 256 (879)
+..-..|.+.+++.++|.++-.+.
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhcc
Confidence 123468999999999998877654
No 406
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.08 E-value=0.065 Score=57.86 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=58.7
Q ss_pred CccEEEEEcCCcchHHHHHHHHhccccc----ccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAV----KTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHY 183 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 183 (879)
..+=+-|||..|.|||.|...+|+...+ +-|| .+...++-+.+. ........ +..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF------------h~Fm~~vh~~l~-~~~~~~~~----l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF------------HEFMLDVHSRLH-QLRGQDDP----LPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc------------cHHHHHHHHHHH-HHhCCCcc----HHHHHHH
Confidence 4556889999999999999999985433 2233 233344444433 11111222 2334455
Q ss_pred hhCCeeEEEeecccccchHhHHHHHHhccC-CCCCcEEEEEccchh
Q 002800 184 IQGNRFLLVLDDVRSRYFNYWQQLMYSLKS-GSEGSRILVTTCEEN 228 (879)
Q Consensus 184 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~ 228 (879)
+.++..||.||.+.-.|..+---+...|.. ...| -|||+|.|..
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~g-vvlVaTSN~~ 168 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALFKRG-VVLVATSNRP 168 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCC-CEEEecCCCC
Confidence 566778999999876544443333333333 2345 4566665543
No 407
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.16 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-.+++|+|+.|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999985
No 408
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.07 E-value=0.023 Score=52.84 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=26.8
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEE
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVS 146 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 146 (879)
.||-|.|.+|+||||||+++.+ +....-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 4788999999999999999998 4544444555555
No 409
>PRK06762 hypothetical protein; Provisional
Probab=95.07 E-value=0.016 Score=55.53 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.5
Q ss_pred cEEEEEcCCcchHHHHHHHHhc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 410
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.06 E-value=0.066 Score=61.16 Aligned_cols=132 Identities=19% Similarity=0.247 Sum_probs=70.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccc-cccccceEEEEEee-cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDA-VKTHFSKRIWVSAS-YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s-~~~~~~~~~i~ 159 (879)
..++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++... ....| +.+.+. .+...+-..+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~---i~i~c~~~~~~~~~~~lf 210 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRHSPRAKAPF---IALNMAAIPKDLIESELF 210 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCe---EeeeCCCCCHHHHHHHhc
Confidence 4689999888888877764332 334577999999999999999987321 11112 223332 22222222211
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
..-. +....... ...-. .-....--|+||+|..........+...+.... ...|||+||..
T Consensus 211 g~~~-g~~~~~~~---~~~g~--~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 211 GHEK-GAFTGANT---IRQGR--FEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred CCCC-CCCCCCCc---CCCCC--eeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 1110 10000000 00000 001122356889999877777777777765431 12388888864
No 411
>PRK03839 putative kinase; Provisional
Probab=95.06 E-value=0.016 Score=56.48 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=19.5
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.|.|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 412
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.05 E-value=0.018 Score=56.54 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=22.0
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 413
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.03 E-value=0.034 Score=50.25 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcc
Q 002800 89 GEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 89 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
++..++-+.|...-. .-.+|.+.|.-|.||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 455555555554321 3458999999999999999999984
No 414
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.03 E-value=0.07 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 415
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.02 E-value=0.2 Score=49.31 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=60.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEe-----------------e---cchHHHHHHHHHHhccCCCC
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSA-----------------S---YPEIRIARAILESLKDGVSS 168 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----------------s---~~~~~~~~~i~~~l~~~~~~ 168 (879)
-.+++|.|+.|.|||||.+.++.-.. .......+++.- . +....+...+..... . .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-~--~ 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK-L--R 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH-h--c
Confidence 45889999999999999999987320 011222222211 0 111122222211000 0 0
Q ss_pred CchhHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchh
Q 002800 169 DLVEIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEEN 228 (879)
Q Consensus 169 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~ 228 (879)
.....+...-.+...+..++=++++|+--+ .|....+.+...+... ..|..||++|.+..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 111222333345555666777999999754 2444455555544432 23677888887753
No 416
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.02 E-value=0.083 Score=52.45 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=48.9
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHHHhccCC------CCCchhHH------
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILESLKDGV------SSDLVEID------ 174 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~~l~~~~------~~~~~~~~------ 174 (879)
..++|.|.+|+|||+|+.++.+... -+..+++.+. ....++.+++...-.... ..+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 3578999999999999999988431 2334667666 455555555543310000 01111111
Q ss_pred ---HHHHHHHHHhhCCeeEEEeecccc
Q 002800 175 ---TVLQQISHYIQGNRFLLVLDDVRS 198 (879)
Q Consensus 175 ---~~~~~l~~~l~~k~~LlVlDdv~~ 198 (879)
...+.++. +++..|+++||+..
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhHH
Confidence 12233333 68999999999843
No 417
>PRK15115 response regulator GlrR; Provisional
Probab=95.00 E-value=0.09 Score=59.58 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=69.3
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHH
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAIL 159 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~ 159 (879)
.++|....+.++.+....-.. ....|.|.|.+|+|||++|+.+++... .. ...|+.+. .+...+-..+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~s~--r~--~~~f~~i~c~~~~~~~~~~~lf 206 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNASP--RA--SKPFIAINCGALPEQLLESELF 206 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHhcC--CC--CCCeEEEeCCCCCHHHHHHHhc
Confidence 578887777777665544321 233567999999999999999987321 11 11234443 22211111111
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 160 ESLKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
.... +...+... ....+ .-....-.|+||+|+.........+...+.... ...|||.||..
T Consensus 207 g~~~-~~~~~~~~---~~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 207 GHAR-GAFTGAVS---NREGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred CCCc-CCCCCCcc---CCCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC
Confidence 1100 00000000 00000 001223479999999887777777877765432 13488888764
No 418
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.99 E-value=0.24 Score=49.22 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhhhcC
Q 002800 179 QISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVINKMG 234 (879)
Q Consensus 179 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~~~ 234 (879)
.+...+-.++=++++|+-.. .|....+.+...+... ..|..||++|.+......+.
T Consensus 139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCC
Confidence 34455556778899999754 3444455555544431 23567888888766655544
No 419
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.99 E-value=0.068 Score=52.65 Aligned_cols=51 Identities=33% Similarity=0.407 Sum_probs=31.2
Q ss_pred cEEEEEcCCcchHHHHHHHHhccccccccc--------ceEEEEEeecchHHHHHHHHH
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHF--------SKRIWVSASYPEIRIARAILE 160 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~~~~~~~~i~~ 160 (879)
.++.|.|++|+||||++..++........| ..++|+....+..++.+.+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~ 91 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRA 91 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHH
Confidence 478899999999999999988742222222 247777766444444444433
No 420
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.99 E-value=0.24 Score=49.35 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhhh
Q 002800 179 QISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK 232 (879)
Q Consensus 179 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 232 (879)
.+.+.+-.++=++++|+-.. .|....+.+...+.....|..||++|.+.+....
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 34455556778889999754 2344455555555543346778888877665543
No 421
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.98 E-value=1.1 Score=47.70 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=32.6
Q ss_pred eEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHH
Q 002800 238 MISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAV 288 (879)
Q Consensus 238 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai 288 (879)
+++|.+++.+|+..++...+-..-.... ..-+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~--~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSR--VDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccC--CCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999987654432211 111334556666778888543
No 422
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.96 E-value=0.18 Score=51.00 Aligned_cols=48 Identities=29% Similarity=0.276 Sum_probs=33.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARA 157 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 157 (879)
.-+++.|.|.+|+|||++|.+++.. ....=..++|++...+..++...
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCHHHHHHH
Confidence 4668899999999999999998863 22222457777776555444444
No 423
>PLN02200 adenylate kinase family protein
Probab=94.94 E-value=0.26 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.3
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|.|.|++|+||||+|+.++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999976
No 424
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.94 E-value=0.32 Score=61.69 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
..+=|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3455779999999999999999984
No 425
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.94 E-value=0.017 Score=69.03 Aligned_cols=183 Identities=15% Similarity=0.166 Sum_probs=86.7
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccCCCC--Cc----hhHHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDGVSS--DL----VEIDTVLQQI 180 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~~~~--~~----~~~~~~~~~l 180 (879)
+.+++.|+|+.+.||||+.+.+.-.. --.++.++|++. .....++..|...++..... .. ....+....+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~---~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA---LMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH---HHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHH
Confidence 45688999999999999999986420 011122233332 11111112222222210000 00 1111222222
Q ss_pred HHHhhCCeeEEEeecccc-cchHhHHHH----HHhccCCCCCcEEEEEccchhhhhhcCccc---eEeCCCCCHHhHHHH
Q 002800 181 SHYIQGNRFLLVLDDVRS-RYFNYWQQL----MYSLKSGSEGSRILVTTCEENVINKMGNTR---MISLGTLSEEASWSL 252 (879)
Q Consensus 181 ~~~l~~k~~LlVlDdv~~-~~~~~~~~l----~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~---~~~l~~L~~~e~~~L 252 (879)
.. + ..+-|+++|.... .++..-..+ ...+. ..|+.+|+||...++........ ...+. ++. +. +
T Consensus 403 ~~-~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~--l 474 (782)
T PRK00409 403 EK-A-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ET--L 474 (782)
T ss_pred Hh-C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-Cc--C
Confidence 22 2 4778999999864 233333333 23332 24789999999987765543211 11111 111 11 1
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhhhcccCCCHHHHHHHHh
Q 002800 253 FCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGEWLNVLK 309 (879)
Q Consensus 253 f~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~ 309 (879)
-..+-+..+.+ . ...|-+|++.+ |+|-.|.--|..+-.. ...+...+++
T Consensus 475 ~~~Ykl~~G~~-g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 475 RPTYRLLIGIP-G-----KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred cEEEEEeeCCC-C-----CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 11111111222 1 22366777766 8898888888777544 2234444444
No 426
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.93 E-value=0.17 Score=52.27 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHHHhccC----CC--CCchhHHHHHHH
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILESLKDG----VS--SDLVEIDTVLQQ 179 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~~l~~~----~~--~~~~~~~~~~~~ 179 (879)
.+..++.|+|.+|.|||||+..+.+ ........ +.+... .+..+ .+.++..+.. .. .-..+...+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~-~VI~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPC-AVIEGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCE-EEECCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 3788999999999999999999987 33333332 222222 22222 1223332200 00 112233444555
Q ss_pred HHHHhhCCeeEEEeecccc
Q 002800 180 ISHYIQGNRFLLVLDDVRS 198 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~ 198 (879)
+...-....=++|++++..
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554444446778899864
No 427
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.93 E-value=0.39 Score=48.44 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=31.6
Q ss_pred HHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhhh
Q 002800 180 ISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK 232 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 232 (879)
+.+.+-.++=++++|+-.. .|....+.+...+.....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 4444555677899999754 2344445555555443335668888877655544
No 428
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.0098 Score=34.96 Aligned_cols=16 Identities=44% Similarity=0.885 Sum_probs=6.3
Q ss_pred CCEEecccCCCCcccCc
Q 002800 524 LRYLNLSRNSKIAELPE 540 (879)
Q Consensus 524 Lr~L~L~~~~~i~~lP~ 540 (879)
|++|+|++|. ++.+|.
T Consensus 2 L~~Ldls~n~-l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPS 17 (22)
T ss_dssp ESEEEETSSE-ESEEGT
T ss_pred ccEEECCCCc-CEeCCh
Confidence 3344444443 334443
No 429
>PTZ00035 Rad51 protein; Provisional
Probab=94.92 E-value=0.14 Score=54.89 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccc----cccceEEEEEee--cchHHHHHHHHHHhc
Q 002800 92 NRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVK----THFSKRIWVSAS--YPEIRIARAILESLK 163 (879)
Q Consensus 92 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s--~~~~~~~~~i~~~l~ 163 (879)
..|-++|..+- ..-.++.|+|.+|+|||||+..++-..+.. ..=..++|++.. ++..+ +.+++++++
T Consensus 105 ~~LD~lLgGGi----~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 105 TQLDKLLGGGI----ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred HHHHHHhCCCC----CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 44445554432 356789999999999999999987532221 112346688766 44444 455555544
No 430
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.90 E-value=0.11 Score=53.22 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=39.8
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~ 163 (879)
.-.++.|.|.+|+|||++|.+++.+.. ..+=..++|++...+..++...++....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~~~~~~~~r~~~~~~ 66 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEMSKEQLLQRLLASES 66 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCCCHHHHHHHHHHHhc
Confidence 345888999999999999999876322 2212357788877777788887766543
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.90 E-value=0.17 Score=52.24 Aligned_cols=101 Identities=9% Similarity=0.132 Sum_probs=52.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cchHHHHHHHHH---HhccCCCCCchhHHHHHHHHHHHh
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YPEIRIARAILE---SLKDGVSSDLVEIDTVLQQISHYI 184 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~i~~---~l~~~~~~~~~~~~~~~~~l~~~l 184 (879)
..+++++|.+|+||||+++.+... ....=..+.++... +. .....++.. .+. -......+.+.+.+.+...-
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~r-i~~~~ql~~~~~~~~-~~~~~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSR-IGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFK 150 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCC-HHHHHHHHHHhhhcC-ceEEecCCHHHHHHHHHHHH
Confidence 468999999999999999988762 22221235555554 22 122222222 222 11111233444444443321
Q ss_pred h-CCeeEEEeeccccc--chHhHHHHHHhccC
Q 002800 185 Q-GNRFLLVLDDVRSR--YFNYWQQLMYSLKS 213 (879)
Q Consensus 185 ~-~k~~LlVlDdv~~~--~~~~~~~l~~~l~~ 213 (879)
. .+.=++++|..-.. +...++++...+..
T Consensus 151 ~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~ 182 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRASETVEEMIETMGQ 182 (270)
T ss_pred hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhh
Confidence 2 24467888988553 33455555554433
No 432
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.89 E-value=0.11 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhc
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
....+++|.|+.|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999987
No 433
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.88 E-value=0.49 Score=50.93 Aligned_cols=71 Identities=30% Similarity=0.368 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCC---CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHHHhc
Q 002800 91 KNRLLNLLLCESSE---KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILESLK 163 (879)
Q Consensus 91 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~~l~ 163 (879)
.++|+++|...... ......||..+|.-|.||||-|-.+++ ..+++=..+.-|++. +...+-++++++++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHHcCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 46777777742211 123567899999999999999999888 343422224444444 444566777777765
No 434
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.88 E-value=0.2 Score=50.55 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=32.9
Q ss_pred HHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhhh
Q 002800 180 ISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK 232 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 232 (879)
+...+..++-++++|+--. .|....+.+...+.....+..||++|.+.+.+..
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 4455556788999999754 2444455555555433334678888888765543
No 435
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.88 E-value=0.024 Score=56.17 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.8
Q ss_pred cEEEEEcCCcchHHHHHHHHh
Q 002800 110 PIISIVGMDGSGKTTLSRQVF 130 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~ 130 (879)
++++|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 436
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.87 E-value=0.51 Score=44.80 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhhCCeeEEEeecccc-cch-HhHHHHHHhcc-CCCCCcEEEEEccchhhhhhcC
Q 002800 171 VEIDTVLQQISHYIQGNRFLLVLDDVRS-RYF-NYWQQLMYSLK-SGSEGSRILVTTCEENVINKMG 234 (879)
Q Consensus 171 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~-~~~~~l~~~l~-~~~~gs~iiiTtR~~~v~~~~~ 234 (879)
...++..-.|.+.+-+++-+|+-|.=.- .|+ -.|+-+ ..|. -+..|..||++|-+.++.+.+.
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3345556667777788899999886421 222 344443 3343 3567999999999988877764
No 437
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.87 E-value=0.18 Score=49.98 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHHHHhhCCeeEEEeecccc-cchHhHH-HHHHhccCCCC--CcEEEEEccchhhhhhcCccceEeC
Q 002800 179 QISHYIQGNRFLLVLDDVRS-RYFNYWQ-QLMYSLKSGSE--GSRILVTTCEENVINKMGNTRMISL 241 (879)
Q Consensus 179 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~-~l~~~l~~~~~--gs~iiiTtR~~~v~~~~~~~~~~~l 241 (879)
.+.+.+..++-++++|+... .+....+ .+...+..... |..||++|.+.+....+ +.++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~--d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA--DHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC--CEEEEE
Confidence 34556667888999999864 2344445 45555443222 56788888887766543 344444
No 438
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.87 E-value=0.11 Score=47.61 Aligned_cols=38 Identities=13% Similarity=-0.019 Sum_probs=27.1
Q ss_pred EEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee
Q 002800 111 IISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS 148 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 148 (879)
.+.|.|+.|.|||+.+..+............++|++-+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~ 39 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPT 39 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCc
Confidence 36799999999999998888743332244567777655
No 439
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.85 E-value=0.073 Score=60.59 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=37.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcc
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
.+++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4599999999999888765432 2345779999999999999999873
No 440
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.85 E-value=0.04 Score=55.44 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHh-
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS--SDLVEIDTVLQQISHYI- 184 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l- 184 (879)
..+++.|+|+.|.||||+.+.+... .--+...++|.+..........++..++.... ........-...+...+
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~---~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~ 105 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI---VLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILK 105 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH---HHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHH
Confidence 4568999999999999999987742 11111122333321111112222222221100 00111111122222233
Q ss_pred -hCCeeEEEeeccc---cc-ch--HhHHHHHHhccCCCCCcEEEEEccchhhhhhcC
Q 002800 185 -QGNRFLLVLDDVR---SR-YF--NYWQQLMYSLKSGSEGSRILVTTCEENVINKMG 234 (879)
Q Consensus 185 -~~k~~LlVlDdv~---~~-~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~ 234 (879)
..++-|+++|..- +. +. ..|. +...+.. ..|+.+|+||-..++...+.
T Consensus 106 ~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 106 SATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred hCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHhh
Confidence 3567899999983 21 11 1222 2233332 34678999998776665443
No 441
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.84 E-value=0.053 Score=58.59 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=49.7
Q ss_pred CceeeehhhHHHHHHHHhcC--------CCCCCCCccEEEEEcCCcchHHHHHHHHhccccccccc---ceEEEEEee--
Q 002800 82 SQVIVRDGEKNRLLNLLLCE--------SSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF---SKRIWVSAS-- 148 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s-- 148 (879)
..++|.++.++.+..++... .........-+.++|++|+|||++|+.++. .....| +..-|....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCcc
Confidence 46999999999998888541 000011235688999999999999999987 333333 222122211
Q ss_pred -cchHHHHHHHHHHh
Q 002800 149 -YPEIRIARAILESL 162 (879)
Q Consensus 149 -~~~~~~~~~i~~~l 162 (879)
.+...+.+++....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 45556666666554
No 442
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.83 E-value=0.43 Score=44.34 Aligned_cols=126 Identities=18% Similarity=0.188 Sum_probs=75.6
Q ss_pred cEEEEEcCCcchHHHHHHHHhc-------------------ccccccccc--eEEEEEee--------------------
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD-------------------IDAVKTHFS--KRIWVSAS-------------------- 148 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~-------------------~~~~~~~f~--~~~wv~~s-------------------- 148 (879)
..|+|+|+.|.||+||..-.+- |+.-+..|. .+-||.-|
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 3689999999999999988763 101111121 13333222
Q ss_pred ----cchHHHHHHHHHHhccCCC-----CCchhHHHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHhcc--CCCC
Q 002800 149 ----YPEIRIARAILESLKDGVS-----SDLVEIDTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLK--SGSE 216 (879)
Q Consensus 149 ----~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~--~~~~ 216 (879)
.+.....+..+++++.+.. .+....++..-.|.+.+...+-+++-|.=.- .+.+.-+.+...+- ....
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~ 196 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER 196 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc
Confidence 3445566777777763321 2334455666677788888888888886421 22233333333322 2356
Q ss_pred CcEEEEEccchhhhhhcCc
Q 002800 217 GSRILVTTCEENVINKMGN 235 (879)
Q Consensus 217 gs~iiiTtR~~~v~~~~~~ 235 (879)
|...++.|-++.+|.+|..
T Consensus 197 G~TlVlVTHD~~LA~Rc~R 215 (228)
T COG4181 197 GTTLVLVTHDPQLAARCDR 215 (228)
T ss_pred CceEEEEeCCHHHHHhhhh
Confidence 8888888999999988764
No 443
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.77 E-value=0.098 Score=59.59 Aligned_cols=131 Identities=14% Similarity=0.197 Sum_probs=71.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccc-ccccccceEEEEEee-cchHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDID-AVKTHFSKRIWVSAS-YPEIRIARAIL 159 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~s-~~~~~~~~~i~ 159 (879)
.+++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.. +-...| +-|.+. ... ..+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~e-~lle--- 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIAE-SLLE--- 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCCh-hHHH---
Confidence 4599999999998888865432 23457799999999999999998732 212222 122222 221 2111
Q ss_pred HHhccCCCCCc-hhHHH-HHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 160 ESLKDGVSSDL-VEIDT-VLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 160 ~~l~~~~~~~~-~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
..+. +...+. ..... ...-+.+ ....--|+||+|..........+...+.... ...|||.||..
T Consensus 281 seLF-G~~~gaftga~~~~~~Gl~e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 AELF-GYEEGAFTGARRGGRTGLIE--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHhc-CCcccccccccccccccchh--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 1122 111100 00000 0000001 1223458999999877777777777765421 12378887754
No 444
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.73 E-value=0.39 Score=48.16 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-.+++|+|..|.|||||++.++.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 45799999999999999999986
No 445
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.047 Score=49.07 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=40.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
.+-|.|.|-||+||||+|.+++. .. .| -|++++.-+++ .++.......-.....|.+.+.+.|...+.+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~~--~~---~~i~isd~vkE--n~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--KT--GL---EYIEISDLVKE--NNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--Hh--CC---ceEehhhHHhh--hcchhcccccccCccccHHHHHHHHHHHHhcCC
Confidence 34578999999999999999986 21 12 25666511111 011111111122344566777777777766544
Q ss_pred e
Q 002800 189 F 189 (879)
Q Consensus 189 ~ 189 (879)
+
T Consensus 78 ~ 78 (176)
T KOG3347|consen 78 N 78 (176)
T ss_pred c
Confidence 3
No 446
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.72 E-value=0.067 Score=58.17 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.7
Q ss_pred cEEEEEcCCcchHHHHHHHHhc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3799999999999999999863
No 447
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.71 E-value=0.22 Score=49.65 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhhh
Q 002800 180 ISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVINK 232 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~ 232 (879)
+...+..++=++++|+--. .|....+.+...+... ..|..||++|.+...+..
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 4444556677999999754 2344445555444432 246678888888765543
No 448
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.71 E-value=0.3 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.9
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|+|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 449
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.51 Score=47.53 Aligned_cols=95 Identities=11% Similarity=0.191 Sum_probs=56.3
Q ss_pred ceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHH
Q 002800 83 QVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIA 155 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 155 (879)
++=|-+..+++|.+...-+-.. +-...+=|.++|.+|.|||-||++|+| +....|- +-+-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATFl-----------RvvG 252 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATFL-----------RVVG 252 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhhh-----------hhhh
Confidence 5667788888888876543210 223445567999999999999999999 4444442 2222
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHhh-CCeeEEEeeccc
Q 002800 156 RAILESLKDGVSSDLVEIDTVLQQISHYIQ-GNRFLLVLDDVR 197 (879)
Q Consensus 156 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 197 (879)
.++++... + +...+...+.+.-. .-+-++++|.++
T Consensus 253 seLiQkyl-G------dGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 253 SELIQKYL-G------DGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred HHHHHHHh-c------cchHHHHHHHHHHHhcCCceEEeehhh
Confidence 33333322 1 12234444444433 446677778774
No 450
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.39 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999998873
No 451
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.67 E-value=0.092 Score=58.79 Aligned_cols=58 Identities=26% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHH
Q 002800 91 KNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRI 154 (879)
Q Consensus 91 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 154 (879)
+..+-+.|..+- ..-.++.|.|.+|+|||||+.+++.. ....-..++|++...+..++
T Consensus 66 i~~LD~~LgGGi----~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 66 IGELDRVLGGGL----VPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred cHHHHHHhcCCc----cCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccHHHH
Confidence 455555565432 24568899999999999999999873 32222356777765444433
No 452
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.67 E-value=0.26 Score=56.26 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=72.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHH
Q 002800 82 SQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILES 161 (879)
Q Consensus 82 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~ 161 (879)
..++|....+.++.+.+..... ....+.|.|..|+|||++|+.+..... ......+-+++..-..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~~~~~~~~~l-- 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAIPKDLIESEL-- 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCCCHHHHHHHh--
Confidence 3588888888887777755322 234567999999999999999987321 11111222333211222222222
Q ss_pred hccCCCCCchhHHHHHHHHHHHhhCCeeEEEeecccccchHhHHHHHHhccCCC-----------CCcEEEEEccc
Q 002800 162 LKDGVSSDLVEIDTVLQQISHYIQGNRFLLVLDDVRSRYFNYWQQLMYSLKSGS-----------EGSRILVTTCE 226 (879)
Q Consensus 162 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 226 (879)
++ ........... ......-....-.|+||+|.....+....+...+..+. ...|||+||..
T Consensus 206 fg-~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 206 FG-HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred cC-CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 11 11000000000 00000111223458999999887777777877765432 24588888864
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.17 Score=59.33 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=48.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee-cc--hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhh
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS-YP--EIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQ 185 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 185 (879)
.+|++++|+.|+||||.+.+++...........+..+... +. ..+-++...+.++ -......+.+++.+.+.+ +.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g-vpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG-VPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC-CCccccCCHHHHHHHHHH-hc
Confidence 4699999999999999999988732111111245555554 33 3444555555554 222222344455554543 34
Q ss_pred CCeeEEEeeccc
Q 002800 186 GNRFLLVLDDVR 197 (879)
Q Consensus 186 ~k~~LlVlDdv~ 197 (879)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 443 66677765
No 454
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.64 E-value=0.019 Score=50.30 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.2
Q ss_pred EEEEcCCcchHHHHHHHHhc
Q 002800 112 ISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~ 131 (879)
|-|+|++|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 455
>PRK04040 adenylate kinase; Provisional
Probab=94.64 E-value=0.024 Score=55.32 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.5
Q ss_pred cEEEEEcCCcchHHHHHHHHhc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 456
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.13 Score=56.34 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.3
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+++++|+.|+||||++..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 457
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.62 E-value=0.027 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 458
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.59 E-value=0.33 Score=47.77 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.7
Q ss_pred EEEEcCCcchHHHHHHHHhc
Q 002800 112 ISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~ 131 (879)
|.|.|++|+||||+|+.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 459
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.58 E-value=0.16 Score=52.96 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhc
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999988765
No 460
>PRK05973 replicative DNA helicase; Provisional
Probab=94.58 E-value=0.074 Score=53.53 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=35.2
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHH
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
.-.++.|.|.+|+|||++|.++... ...+=..+++++...+..++...+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 4457889999999999999998763 2223345777776666666665543
No 461
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.57 E-value=0.073 Score=58.91 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=53.5
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHHHhccCC------CCCchhH-----HH
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILESLKDGV------SSDLVEI-----DT 175 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~~l~~~~------~~~~~~~-----~~ 175 (879)
..++|.|.+|+|||||+.++.+... +.+-+.++++.+. ..+.++..++...-.... ..+.... ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 4578999999999999999887422 2245677777666 555566666654321001 0111111 11
Q ss_pred HHHHHHHHh---hCCeeEEEeecccc
Q 002800 176 VLQQISHYI---QGNRFLLVLDDVRS 198 (879)
Q Consensus 176 ~~~~l~~~l---~~k~~LlVlDdv~~ 198 (879)
....+.+++ .++++|+++||+-.
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchH
Confidence 223345555 37899999999944
No 462
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.55 E-value=0.29 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-.+|+|+|+.|+|||||.+.++-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999985
No 463
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.53 E-value=0.054 Score=52.47 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=19.7
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 464
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.53 E-value=0.11 Score=56.95 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=49.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEee---cchHHHHHHHHHHhccCC------CCCchhHH-----
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSAS---YPEIRIARAILESLKDGV------SSDLVEID----- 174 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~i~~~l~~~~------~~~~~~~~----- 174 (879)
-..++|+|..|+|||||++.++.. . ..+.++++-+. ..+.++..+++..-.... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999862 1 22455555555 444455555433311000 01111111
Q ss_pred HHHHHHHHHh--hCCeeEEEeecccc
Q 002800 175 TVLQQISHYI--QGNRFLLVLDDVRS 198 (879)
Q Consensus 175 ~~~~~l~~~l--~~k~~LlVlDdv~~ 198 (879)
...-.+.+++ +++++|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1122234444 58999999999954
No 465
>PRK15453 phosphoribulokinase; Provisional
Probab=94.52 E-value=0.16 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=22.0
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 466
>PRK05439 pantothenate kinase; Provisional
Probab=94.52 E-value=0.16 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhc
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3677999999999999999999876
No 467
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.51 E-value=0.11 Score=56.74 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=35.4
Q ss_pred cEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHH
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAIL 159 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~ 159 (879)
+++.|.|.+|.|||.||-.++....-.......++++........++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l 51 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQL 51 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHH
Confidence 47889999999999999999984311455666777877744444444333
No 468
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.51 E-value=0.39 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-.+++|.|+.|+|||||++.++.
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 469
>PRK14527 adenylate kinase; Provisional
Probab=94.51 E-value=0.1 Score=51.24 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.5
Q ss_pred CccEEEEEcCCcchHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
...+|.|+|++|+||||+|+.++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 470
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.48 E-value=0.07 Score=56.07 Aligned_cols=99 Identities=21% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCC---
Q 002800 91 KNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVS--- 167 (879)
Q Consensus 91 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~--- 167 (879)
...|-..|..+ +-+.-+++-|+|+.|+||||||..+.. .....-..++|+..... +-...+++++ -..
T Consensus 38 ~~~LD~aLg~G---G~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~---ld~~~a~~lG-vdl~rl 108 (322)
T PF00154_consen 38 SPALDYALGIG---GLPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHA---LDPEYAESLG-VDLDRL 108 (322)
T ss_dssp -HHHHHHTSSS---SEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS------HHHHHHTT---GGGE
T ss_pred CcccchhhccC---ccccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCccc---chhhHHHhcC-ccccce
Confidence 34455555422 223567999999999999999999887 33333455889887621 2223444443 111
Q ss_pred --CCchhHHHHHHHHHHHhhC-CeeEEEeecccc
Q 002800 168 --SDLVEIDTVLQQISHYIQG-NRFLLVLDDVRS 198 (879)
Q Consensus 168 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 198 (879)
......++....+.+.++. .--++|+|-|-.
T Consensus 109 lv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 109 LVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred EEecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 1122334444555555543 345888898744
No 471
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.61 Score=47.60 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhhh
Q 002800 179 QISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK 232 (879)
Q Consensus 179 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 232 (879)
.+.+.|..++=++++|+-.. .|....+.+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 35555667788999999754 3444455555555443236678888888766544
No 472
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.48 E-value=0.1 Score=58.40 Aligned_cols=58 Identities=26% Similarity=0.141 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecch
Q 002800 88 DGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPE 151 (879)
Q Consensus 88 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 151 (879)
..-+..+-+.|..+- ..-.++.|.|.+|+|||||+.+++.. ....-..++|++...+.
T Consensus 77 ~TGi~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs~ 134 (454)
T TIGR00416 77 SSGFGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEESL 134 (454)
T ss_pred ccCcHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCCH
Confidence 334566666665432 25668899999999999999999763 22222357777654333
No 473
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.0014 Score=64.82 Aligned_cols=79 Identities=24% Similarity=0.219 Sum_probs=46.8
Q ss_pred ccccceEEEEeccCCCCCCCCCchHhhhcCCCCCCCccEEEEeeecCCccCcchhhcccCCcEEeEcCCCCCC---CCCC
Q 002800 649 KENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLE---QLPR 725 (879)
Q Consensus 649 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~---~lp~ 725 (879)
+.+.+.|.+.+|.+. +..+ ....+.|+.|.|+-|.+..+. .+..+++|++|+|+.|. +. .+..
T Consensus 18 l~~vkKLNcwg~~L~--------DIsi---c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~-I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--------DISI---CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNC-IESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCCcc--------HHHH---HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 345566666665531 1222 233567777777777776652 25567777777777662 22 2334
Q ss_pred CCCCCccceeeccccc
Q 002800 726 LGELPSLESLTVRNMR 741 (879)
Q Consensus 726 l~~l~~L~~L~L~~~~ 741 (879)
|.++|+|++|.|...+
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 6677777777776644
No 474
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.028 Score=54.16 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
..+|+|-||-|+||||||+.+++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH
Confidence 46899999999999999999998
No 475
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.43 E-value=0.024 Score=56.28 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCCCEEecccCCC--CcccCcccccCCCCcEEeccCc--ccccccchhhhcccccceEecCCcccccCC--ccCCCCCCC
Q 002800 522 LHLRYLNLSRNSK--IAELPESLCDLYNLETMELSWC--ISLKRLPQRMGQLINLWHLVNDGTSLSYMP--KGIERLTCL 595 (879)
Q Consensus 522 ~~Lr~L~L~~~~~--i~~lP~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L 595 (879)
..|++|++.++.. +..+| .|++|+.|+++.| +....++.-..++++|++|++++|+++.+. ..+..+.+|
T Consensus 43 ~~le~ls~~n~gltt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3444555544441 33444 4889999999988 555566666777899999999999876421 224556666
Q ss_pred CcCCceeecc
Q 002800 596 RTLNEFIVSV 605 (879)
Q Consensus 596 ~~L~~~~~~~ 605 (879)
..|.++.+..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 6666665543
No 476
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.09 Score=53.41 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCcchHHHHHHHHhccccccccc
Q 002800 107 TTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHF 139 (879)
Q Consensus 107 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 139 (879)
.....++|||++|.|||-+|+.|+. ...-.|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 3567899999999999999999998 555454
No 477
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.40 E-value=0.28 Score=49.59 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCC-CCCcEEEEEccchhhhhh
Q 002800 180 ISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSG-SEGSRILVTTCEENVINK 232 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~ 232 (879)
+...+-..+-++++|+--. .|....+.+...+... ..|..||++|.+......
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 4445556778899999754 3444445555554432 236678889888765543
No 478
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.28 Score=49.93 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-.+++|+|+.|.|||||++.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 479
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.40 E-value=0.19 Score=59.32 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhCCeeEEEeeccccc-chHhHHHHHHhccCC-CCCcEEEEEccchhhh
Q 002800 173 IDTVLQQISHYIQGNRFLLVLDDVRSR-YFNYWQQLMYSLKSG-SEGSRILVTTCEENVI 230 (879)
Q Consensus 173 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~ 230 (879)
.+...=.|.+.+-.++=+|+||..-+. |.+.-..+...+... ...+.|+||-|...+.
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 344444567777888999999998663 334445565555543 3456777777765443
No 480
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.39 E-value=0.31 Score=49.15 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=31.6
Q ss_pred HHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhh
Q 002800 180 ISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVIN 231 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 231 (879)
+...+..++=++++|+--. .|....+.+...+.....+..||++|.+.+...
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 4444555677999998744 344444555555544333367888888876653
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.38 E-value=0.11 Score=56.17 Aligned_cols=111 Identities=13% Similarity=0.183 Sum_probs=60.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHhhCCe
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLKDGVSSDLVEIDTVLQQISHYIQGNR 188 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 188 (879)
...+.|.|+.|+||||+.+.+.. .+.......++.-.. ..+-........+. ..... .+.....+.++..|+..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~tiEd-p~E~~~~~~~~~i~-q~evg-~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITIED-PIEYVHRNKRSLIN-QREVG-LDTLSFANALRAALREDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEEcC-ChhhhccCccceEE-ccccC-CCCcCHHHHHHHhhccCC
Confidence 35789999999999999999887 344444445443222 11111000000011 11111 112335566777888899
Q ss_pred eEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchhh
Q 002800 189 FLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEENV 229 (879)
Q Consensus 189 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v 229 (879)
=.|++|.+.+. +.+...... ...|-.|+.|.-..++
T Consensus 197 d~i~vgEird~--~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 197 DVILIGEMRDL--ETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred CEEEEeCCCCH--HHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 99999999763 455443333 2234445555544333
No 482
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.35 E-value=0.14 Score=52.36 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred cEEEEEcCCcchHHHHHHHHhccccc--ccccceEEEEEee---cchHHHHHHHHHHhccCCC------CCchhHH----
Q 002800 110 PIISIVGMDGSGKTTLSRQVFDIDAV--KTHFSKRIWVSAS---YPEIRIARAILESLKDGVS------SDLVEID---- 174 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s---~~~~~~~~~i~~~l~~~~~------~~~~~~~---- 174 (879)
..++|.|-.|+|||+|+..+.+.... +.+-+.++++.+. ....++..++...=..... .+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 35789999999999999999874221 1224667787777 5556666666553110010 1111111
Q ss_pred -HHHHHHHHHhh---CCeeEEEeecccc
Q 002800 175 -TVLQQISHYIQ---GNRFLLVLDDVRS 198 (879)
Q Consensus 175 -~~~~~l~~~l~---~k~~LlVlDdv~~ 198 (879)
...-.+.++++ ++++|+++||+..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11223444443 6899999999854
No 483
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.35 E-value=0.12 Score=59.97 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=58.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHhccccccccc---ceEEEEEee--cchHHHHHHHHHHhccCCCCCc---hhHHHHHHHH
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFDIDAVKTHF---SKRIWVSAS--YPEIRIARAILESLKDGVSSDL---VEIDTVLQQI 180 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s--~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~l 180 (879)
.++..|.|.+|.||||+++.+... +.... ...+.+... .....+...+...+. ...... .........+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~~~~~~~~~~~~a~Ti 243 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPLTDEQKKRIPEEASTL 243 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-ccccchhhhhcCCCchHHH
Confidence 357889999999999999988762 22111 134444444 222233332322221 100000 0000011222
Q ss_pred HHHhh------------CCe---eEEEeecccccchHhHHHHHHhccCCCCCcEEEEEccchh
Q 002800 181 SHYIQ------------GNR---FLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCEEN 228 (879)
Q Consensus 181 ~~~l~------------~k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 228 (879)
.+.|. +.+ =++|+|.+.-.+...+..+...++ +++|+|+---..+
T Consensus 244 HrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 244 HRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred HHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 22221 111 289999998776666666777665 5678887665433
No 484
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.35 E-value=0.22 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.6
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDI 132 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~ 132 (879)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999873
No 485
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.34 E-value=0.21 Score=55.75 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
..|++++|+.|+||||++.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999999987
No 486
>PRK13947 shikimate kinase; Provisional
Probab=94.34 E-value=0.029 Score=54.13 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.4
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 487
>PRK14532 adenylate kinase; Provisional
Probab=94.32 E-value=0.24 Score=48.58 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEcCCcchHHHHHHHHhc
Q 002800 112 ISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 112 v~I~G~gGiGKTtLa~~v~~ 131 (879)
|.|.|++|+||||+|+.++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999986
No 488
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=1.5 Score=46.74 Aligned_cols=56 Identities=9% Similarity=-0.110 Sum_probs=31.9
Q ss_pred cceEeCCCCCHHhHHHHHHHHhccCCCCchhhHHHHHHHHHHHhhcCCChhHHHHHhh
Q 002800 236 TRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGS 293 (879)
Q Consensus 236 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~l~~~~~~i~~~~~glPLai~~~~~ 293 (879)
..++++.+.+.+|+.++...+.-..-.. +..+ -++--+++.-..+|.|--+.-++.
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~-kkv~-~Ee~~kql~fLSngNP~l~~~lca 458 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLL-KKVP-GEENIKQLYFLSNGNPSLMERLCA 458 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHH-hhcC-cccchhhhhhhcCCCHHHHHHHHH
Confidence 4678999999999998887654221100 0000 022345566666888844444443
No 489
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.31 E-value=0.34 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHhc
Q 002800 109 LPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 109 ~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
-.+++|+|+.|.|||||.+.+..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999985
No 490
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.31 E-value=0.5 Score=52.92 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=39.3
Q ss_pred CccEEEEEcCCcchHHHHHHHHhcccccccccceEEEEEeecchHHHHHHHHHHhc
Q 002800 108 TLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSKRIWVSASYPEIRIARAILESLK 163 (879)
Q Consensus 108 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~i~~~l~ 163 (879)
.-.++.|-|.+|+|||++|..++.+.-.... ..++|++...+..++...++....
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fSlEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFSLEMSAEQLGERLLASKS 247 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHHHHc
Confidence 4457889999999999999999863222222 346677666777788888777654
No 491
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.69 Score=46.96 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHhhCCeeEEEeecccc-cchHhHHHHHHhccCCCCCcEEEEEccchhhhhh
Q 002800 180 ISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYSLKSGSEGSRILVTTCEENVINK 232 (879)
Q Consensus 180 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 232 (879)
|.+.+..++=++++|+-.. .|....+.+...+.....|..||++|.+......
T Consensus 150 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 150 IARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4445556778999999754 2344444454444433346678888887766543
No 492
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.28 E-value=0.023 Score=33.35 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=11.8
Q ss_pred CCcEEeccCcccccccchhhhc
Q 002800 547 NLETMELSWCISLKRLPQRMGQ 568 (879)
Q Consensus 547 ~L~~L~L~~~~~l~~lp~~i~~ 568 (879)
+|++|||++| .+..+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3566666666 45566655443
No 493
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.32 Score=48.71 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.9
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+++|+|+.|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999985
No 494
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.26 E-value=0.078 Score=59.13 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCCCCCCccEEEEEcCCcchHHHHHHHHhccccccc-ccceEEE-EEeecchHHHHHHHHHHhcc---CCC
Q 002800 93 RLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKT-HFSKRIW-VSASYPEIRIARAILESLKD---GVS 167 (879)
Q Consensus 93 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~w-v~~s~~~~~~~~~i~~~l~~---~~~ 167 (879)
+++++|..-. .-...+|+|++|+|||||++.+++ .+.. +-++.++ +-+....+++ .+|-+.+.. ...
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEV-tdm~rsVkgeVVasT 476 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEV-TDMQRSVKGEVIAST 476 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhH-HHHHHhccceEEEEC
Confidence 4555555432 233567999999999999999998 3322 3344333 3333333333 334444420 011
Q ss_pred CCc-----hhHHHHHHHHHHHh--hCCeeEEEeecccc
Q 002800 168 SDL-----VEIDTVLQQISHYI--QGNRFLLVLDDVRS 198 (879)
Q Consensus 168 ~~~-----~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 198 (879)
.+. .....+.-.+.+++ .++.+||++|++..
T Consensus 477 ~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 477 FDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 111 11122222334444 58899999999843
No 495
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.23 E-value=0.034 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.4
Q ss_pred cEEEEEcCCcchHHHHHHHHhc
Q 002800 110 PIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 110 ~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 496
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.92 Score=44.92 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=34.4
Q ss_pred ceeeehhhHHHHHHHHhcCCCC-------CCCCccEEEEEcCCcchHHHHHHHHhc
Q 002800 83 QVIVRDGEKNRLLNLLLCESSE-------KQTTLPIISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 131 (879)
++=|-+..++++++.+.-+-.. +-...+=|..+|++|.|||-+|++.+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 4556677788888776543210 122345577999999999999999886
No 497
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.22 E-value=0.65 Score=46.14 Aligned_cols=59 Identities=8% Similarity=0.061 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCCeeEEEeecccc-cchHhHHHHHHh-ccC-CCCCcEEEEEccchhhhhh
Q 002800 174 DTVLQQISHYIQGNRFLLVLDDVRS-RYFNYWQQLMYS-LKS-GSEGSRILVTTCEENVINK 232 (879)
Q Consensus 174 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~-l~~-~~~gs~iiiTtR~~~v~~~ 232 (879)
+...-.+.+.+..++=++++|+-.. .+....+.+... +.. ...|..||++|.+......
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 3334446666777888999999654 234444555442 322 2346778888877665554
No 498
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.22 E-value=0.028 Score=55.70 Aligned_cols=21 Identities=48% Similarity=0.817 Sum_probs=19.6
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
+|+|.|+.|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 499
>PRK02496 adk adenylate kinase; Provisional
Probab=94.21 E-value=0.24 Score=48.26 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.+.|.|++|+||||+|+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377899999999999999976
No 500
>PRK14531 adenylate kinase; Provisional
Probab=94.20 E-value=0.27 Score=47.94 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEcCCcchHHHHHHHHhc
Q 002800 111 IISIVGMDGSGKTTLSRQVFD 131 (879)
Q Consensus 111 vv~I~G~gGiGKTtLa~~v~~ 131 (879)
.|.|+|++|+||||+|+.++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
Done!