Query 002800
Match_columns 879
No_of_seqs 391 out of 4825
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 18:46:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002800.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1511-1515//hhsearch_pdb/002800hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 385.9 27.4 322 78-427 124-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 344.5 26.3 313 77-425 119-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 323.6 20.4 285 83-419 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 298.6 25.8 309 78-423 120-450 (591)
5 3rgz_A Protein brassinosteroid 1.0 1 1 239.6 15.6 393 442-876 268-764 (768)
6 4eco_A Uncharacterized protein 1.0 1 1 227.0 18.0 346 442-856 205-599 (636)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 225.9 22.1 353 458-857 440-840 (876)
8 3rgz_A Protein brassinosteroid 1.0 1 1 218.8 16.2 383 442-857 199-693 (768)
9 4eco_A Uncharacterized protein 1.0 1 1 216.4 21.5 355 441-858 247-633 (636)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 214.3 23.9 149 436-596 26-180 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=385.87 Aligned_cols=322 Identities=18% Similarity=0.230 Sum_probs=260.4
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHC--CCCCCCCCCEEEEEEEE-C---CH
Q ss_conf 557885034204699999998067988899822999991896618999999952--21302312609999942-4---45
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFD--IDAVKTHFSKRIWVSAS-Y---PE 151 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~-~---~~ 151 (879)
.+..+..|||++++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++.+|+.++|++++ . +.
T Consensus 124 ~p~~~~~~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 124 VPKQMTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CBCCCCSCCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC---CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH
T ss_conf 9997760784179999999872515---7896289998699998899999999840698746699579999789878799
Q ss_pred HHHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHHHCC-EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 8999999998116999------98201899999999986079-1699960001654676999998404899996799974
Q 002800 152 IRIARAILESLKDGVS------SDLVEIDTVLQQISHYIQGN-RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTT 224 (879)
Q Consensus 152 ~~~~~~i~~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiiTt 224 (879)
..++..|+.+++.... ....+.+.+...+.++|.++ |+||||||||+.+...|.. .+||+|||||
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTT 272 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTT 272 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC--------CCCCEEEEEC
T ss_conf 99999999998537553455553314699999999999768984899997999714415432--------6998899974
Q ss_pred CCHHHHHHCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 5412542018-665076789997869999999841479993455789999999985319981579997411036889879
Q 002800 225 CEENVINKMG-NTRMISLGTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGE 303 (879)
Q Consensus 225 R~~~~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~ 303 (879)
|+..++..++ ....+++++|+.++||+||.+.++.... .+++.+++.+|+++|+|+||||+++|+.++.+ .+ .
T Consensus 273 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~----~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~ 346 (549)
T 2a5y_B 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV----GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-E 346 (549)
T ss_dssp SBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-H
T ss_pred CCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-HH-H
T ss_conf 977999970889738989998989999999987448998----55689999999999599839999999984434-48-9
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCC
Q ss_conf 999983010001235854224577520478068998986-----------73357888412888999999982--98422
Q 002800 304 WLNVLKSKIWELKLADKEHFLPLLLSYYDLPSALRKCFL-----------YCAIFPKNYEIEKDRLIKLWMAQ--GYLKV 370 (879)
Q Consensus 304 w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~ 370 (879)
|...+....+.. ....+..++.+||++|+.++|.||+ |||+||+++.|+ +.+|+|+ |++..
T Consensus 347 ~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~ 420 (549)
T 2a5y_B 347 KMAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICS 420 (549)
T ss_dssp HHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC----
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECC
T ss_conf 998757876136--477789897516202267999997526522336743235608997666----53311013550026
Q ss_pred CC-CCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
Q ss_conf 79-8638898999999986310112110146798164501202679999996204502
Q 002800 371 EG-RDDTELIGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHNIVHDFAQFLTKNECF 427 (879)
Q Consensus 371 ~~-~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdli~~~~~~~~~~e~~ 427 (879)
.. ....+++++ ++++|+++||++....+ ... +|+|||+++++++.++..++.
T Consensus 421 ~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~-~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 421 NEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVL-TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp ---CCCTHHHHH-HHHHTTTBSSCSEEECS---SSC-EEECCHHHHHHHHTTSCTHHH
T ss_pred CCCCCCHHHHHH-HHHHHHHCCCEEEECCC---CCE-EEEECHHHHHHHHHHHHHHHH
T ss_conf 778999999999-99999875883671479---804-999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=344.49 Aligned_cols=313 Identities=19% Similarity=0.263 Sum_probs=242.7
Q ss_pred CCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC-CCCCC-EEEEEEEE----CC
Q ss_conf 55578850342046999999980679888998229999918966189999999522130-23126-09999942----44
Q 002800 77 SVVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV-KTHFS-KRIWVSAS----YP 150 (879)
Q Consensus 77 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~~----~~ 150 (879)
...+++.||||++++++|.++|..... ..++|+|+||||+||||||+++|++.+. ..+|. .++|+.++ .+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~----~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNG----EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTT----SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCC----CCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf 799986412579999999999861358----8777999918988888999998607567886278817999978857267
Q ss_pred HHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHHCC--EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 5899999999811699---998201899999999986079--16999600016546769999984048999967999745
Q 002800 151 EIRIARAILESLKDGV---SSDLVEIDTVLQQISHYIQGN--RFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTC 225 (879)
Q Consensus 151 ~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiiTtR 225 (879)
....+..++..+.... .....+.+.+...+...+.++ |+||||||+|+. ..| ...++|++||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~-------~~~~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVL-------KAFDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHH-------TTTCSSCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHH-------HHHCCCCEEEEECC
T ss_conf 999999999986553033347887778999999999735678789999567997--788-------76368978999927
Q ss_pred CHHHHHH-CCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 4125420-18665076789-997869999999841479993455789999999985319981579997411036889879
Q 002800 226 EENVINK-MGNTRMISLGT-LSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGE 303 (879)
Q Consensus 226 ~~~~~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~ 303 (879)
+..++.. .+....+++.+ |+.+++++||...++.... .+.+.+.+|+++|+|+||||+++|++|+.+. ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~------~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKE------DLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCST------TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCHH------HCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HH
T ss_conf 789987634884379825888878899999986579813------4838899999984997799999999862480--57
Q ss_pred HHHHHHHHHCCCC--------CCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999830100012--------35854224577520478068998986733578884128889999999829842279863
Q 002800 304 WLNVLKSKIWELK--------LADKEHFLPLLLSYYDLPSALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDD 375 (879)
Q Consensus 304 w~~~l~~~~~~~~--------~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~ 375 (879)
|...++....... .....+..++.+||+.|++++|.||++||+||+++.|++..++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC----------
T ss_conf 9999999865044303465564467799999989986799999999972813799751899999885898----------
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCC
Q ss_conf 88989999999863101121101467981645012026799999962045
Q 002800 376 TELIGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHNIVHDFAQFLTKNE 425 (879)
Q Consensus 376 ~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdli~~~~~~~~~~e 425 (879)
++.++.++++|++++|++.... +... +|+||++++++++.....+
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~---~~~~-~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRN---GKSF-CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEES---SSSE-EEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHHCCCEEEECC---CCCE-EEEECHHHHHHHHHHHHHH
T ss_conf -8899999999974463389637---9811-8996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=323.56 Aligned_cols=285 Identities=19% Similarity=0.184 Sum_probs=223.9
Q ss_pred CEEEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE-EEEEEEE--CCHHHHHHHHH
Q ss_conf 50342046999999980679888998229999918966189999999522130231260-9999942--44589999999
Q 002800 83 QVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAVKTHFSK-RIWVSAS--YPEIRIARAIL 159 (879)
Q Consensus 83 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~--~~~~~~~~~i~ 159 (879)
..|||++++++|.++|.... ..++|+|+||||+||||||+++|++.++..+|+. ++|++++ ++...+...++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 77892899999999974358-----9718999769996679999999971498874899389998289999999999999
Q ss_pred HHHCCCC---C--C-----CCHHHHHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 9811699---9--9-----8201899999999986---079169996000165467699999840489999679997454
Q 002800 160 ESLKDGV---S--S-----DLVEIDTVLQQISHYI---QGNRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE 226 (879)
Q Consensus 160 ~~l~~~~---~--~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiiTtR~ 226 (879)
..+.... . . ...+.+.+...+.+.| .++|+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHH----C---CCEEEEEECCC
T ss_conf 99862272102200134679999999999999999850478879987186818--999864----7---98299994437
Q ss_pred HHHHHHCCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-C
Q ss_conf 1254201866507678------99978699999998414799934557899999999853199815799974110368-8
Q 002800 227 ENVINKMGNTRMISLG------TLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFK-R 299 (879)
Q Consensus 227 ~~~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-~ 299 (879)
..++..+.....++++ +|+.+||++||++..... . .++..+ .|+|+||||+++|+.|+.+ .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-~--------eeL~~e---ICgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-P--------QDLPRE---VLTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-T--------TTHHHH---HCCCCHHHHHHHHHHHHHSCS
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-H--------HHHHHH---HHCCCHHHHHHHHHHHHCCCC
T ss_conf 3799866897089946865568969999999999974998-8--------999999---969899999999999848899
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 98799999830100012358542245775204780689-98986733578884128889999999829842279863889
Q 002800 300 NIGEWLNVLKSKIWELKLADKEHFLPLLLSYYDLPSAL-RKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDDTEL 378 (879)
Q Consensus 300 ~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~e~ 378 (879)
+...|... ....+..++.+||+.|+++. |.||++||+||+++.|+.+.++.+|+++| ++
T Consensus 343 s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KS 402 (1221)
T ss_dssp SHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SH
T ss_pred CHHHHHCC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC----------HH
T ss_conf 79998669----------86189999999998488999999999971779999877999998766778----------89
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 89999999863101121101467981645012026799999
Q 002800 379 IGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHNIVHDFAQ 419 (879)
Q Consensus 379 ~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdli~~~~~ 419 (879)
.+..++++|+++||++.... .. +|+|||+++++..
T Consensus 403 dAe~~L~eLvdRSLLq~d~~---~~---rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQPK---ES---TISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCSS---SS---EEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEECC---CC---EEEEHHHHHHHHC
T ss_conf 99999999996198898689---99---8986099999856
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=298.56 Aligned_cols=309 Identities=20% Similarity=0.257 Sum_probs=232.2
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC-CCCCC-EEEEEEEE-CCHHHH
Q ss_conf 5578850342046999999980679888998229999918966189999999522130-23126-09999942-445899
Q 002800 78 VVDSSQVIVRDGEKNRLLNLLLCESSEKQTTLPIISIVGMDGSGKTTLSRQVFDIDAV-KTHFS-KRIWVSAS-YPEIRI 154 (879)
Q Consensus 78 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~~-~~~~~~ 154 (879)
...++.||||+.++++|.+++..... +.++|+|+||||+||||||++++++.++ ..+|+ .++|++++ .+...+
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~ 195 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKG----EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL 195 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTT----SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCC----CCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 99987140529999999999860368----88469997699898899999998355688852899659997787766889
Q ss_pred HHHH---HHHHCCCC---CCCCHHHHHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 9999---99811699---99820189999999998607--9169996000165467699999840489999679997454
Q 002800 155 ARAI---LESLKDGV---SSDLVEIDTVLQQISHYIQG--NRFLLVLDDVRSRYFNYWQQLMYSLKSGSEGSRILVTTCE 226 (879)
Q Consensus 155 ~~~i---~~~l~~~~---~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiiTtR~ 226 (879)
...+ +..+.... .....+.+.....+...+.+ +++||||||+|+. ..+ ..+ .++++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l-~~l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL-KAF---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH-HTT---CSSCEEEEEESC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCH-----HHH-HHH---CCCCEEEEECCC
T ss_conf 99999999985035565567998899999999999706799869998589987-----999-876---379869998988
Q ss_pred HHHHHHCCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 125420186650767---89997869999999841479993455789999999985319981579997411036889879
Q 002800 227 ENVINKMGNTRMISL---GTLSEEASWSLFCLVAFYWRRSDEEFQELEHIGRQVIRKCKNLPLAVKVIGSHLRFKRNIGE 303 (879)
Q Consensus 227 ~~~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~ 303 (879)
..++..+. ...+++ ++|+.+++++||...++.... ...+.+.+|+++|+|+||||+++|+.++... ..
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~------~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~ 337 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKA------DLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGG------GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TC
T ss_pred CHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCC------CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC--HH
T ss_conf 17777348-982686158899989999999987189831------0459999999995898379999999984484--35
Q ss_pred HHHHHHHHHCCC--------CCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999983010001--------235854224577520478068998986733578884128889999999829842279863
Q 002800 304 WLNVLKSKIWEL--------KLADKEHFLPLLLSYYDLPSALRKCFLYCAIFPKNYEIEKDRLIKLWMAQGYLKVEGRDD 375 (879)
Q Consensus 304 w~~~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~ 375 (879)
|...++...... ......+..++.+||+.|+++.|.||+++|+||+++.|+...+..+|.++
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------- 407 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---------- 407 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC----------
T ss_conf 9999999988689876511465437899999999986899999999974556799850899999996658----------
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHC
Q ss_conf 889899999998631011211014679816450120267999999620
Q 002800 376 TELIGEEFFESLASHSLLHDFQKNEFDGRIIRCKMHNIVHDFAQFLTK 423 (879)
Q Consensus 376 ~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~mHdli~~~~~~~~~ 423 (879)
.+.+..++.+|++++|++.... +... +|+||+++++++.....
T Consensus 408 -~~~~~~~l~~L~~~~Ll~~~~~---~~~~-~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 -TEEVEDILQEFVNKSLLFCDRN---GKSF-RYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEEE---TTEE-EEECCHHHHHHHHHHTG
T ss_pred -HHHHHHHHHHHHHCCCEEEECC---CCCC-EEEECHHHHHHHHHHHH
T ss_conf -8999999999985958688548---9856-79976899999986535
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=239.57 Aligned_cols=393 Identities=20% Similarity=0.167 Sum_probs=199.9
Q ss_pred CCCEEEEEEEECCCC-CCCCCCCCC-CCCCEEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCC-CCCCC-
Q ss_conf 997369998831568-896232489-97319994069985445351665236994338886999874322332-13711-
Q 002800 442 NENIQHLMIKFETER-KFPTSVYNR-KRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIK-RVPRG- 517 (879)
Q Consensus 442 ~~~~r~l~l~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~-~lp~~- 517 (879)
..+++++.+..+... ..|..+... ++|+.|.+.++ .+....|..+..+++|++|++++ +.+. .+|..
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~L~~------n~l~~~ip~~~ 338 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN---HFYGAVPPFFGSCSLLESLALSS------NNFSGELPMDT 338 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS---EEEECCCGGGGGCTTCCEEECCS------SEEEEECCHHH
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCC---CCCCCCCHHHHCCCCCCEEECCC------CCCCCCCCHHH
T ss_conf 6878989791785577258888844686889989689---67784236775587766778978------85257379788
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCHHHHC--CCCCCEEECCCCCCC-CCCCCCCCCC
Q ss_conf 11677897896026888732480002689-8758821675455524243102--456655752784265-4783588988
Q 002800 518 IRKLLHLRYLNLSRNSKIAELPESLCDLY-NLETMELSWCISLKRLPQRMGQ--LINLWHLVNDGTSLS-YMPKGIERLT 593 (879)
Q Consensus 518 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~l~~lp~~l~~--L~~L~~L~l~~~~l~-~lp~~i~~l~ 593 (879)
+..+++|++|++++|.....+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.+. .+|..++.++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 72488887884847843762309898632277199862787478767666533247761898977846542487775689
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHH
Q ss_conf 99858942204567988666801232541478734872348879210001003776565608998126878899987547
Q 002800 594 CLRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKDREKGSTNKDDE 673 (879)
Q Consensus 594 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 673 (879)
+|+.|++..+..... . ...+..+..|+ .+.+. ........+..+..+++|+.|+++.|......+
T Consensus 419 ~L~~L~Ls~N~l~~~--~---p~~l~~l~~L~-~L~L~---~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p------ 483 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGT--I---PSSLGSLSKLR-DLKLW---LNMLEGEIPQELMYVKTLETLILDFNDLTGEIP------ 483 (768)
T ss_dssp TCCEEECCSSEEESC--C---CGGGGGCTTCC-EEECC---SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC------
T ss_pred CCCEEECCCCCCCCC--C---CHHHHCCCCCC-EEECC---CCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCC------
T ss_conf 879898958846685--4---67774499889-89897---881547189788287773299901995137588------
Q ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCEEECCCCCC
Q ss_conf 5603898889966899954169965861221014785885708888898999-999776663000222123275666667
Q 002800 674 DALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR-LGELPSLESLTVRNMRRLEKVGNEFLG 752 (879)
Q Consensus 674 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~ 752 (879)
..+..+++|+.|++++|......|.|+..+++|+.|++++|.....+|. +..+++|+.|++++|+....++..+..
T Consensus 484 ---~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 484 ---SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp ---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred ---HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf ---78816998998975399518968768856899998989789433748877708898998989888468827957860
Q ss_pred C--------------------------------------------------------------CHHHHCCCCCCCCCCCC
Q ss_conf 8--------------------------------------------------------------30001001346533566
Q 002800 753 I--------------------------------------------------------------DESRLLRKDEGKVLGTD 770 (879)
Q Consensus 753 ~--------------------------------------------------------------~~~~~~~~~~l~~~~l~ 770 (879)
. .+..+..+..+..++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECC
T ss_conf 42122320134542111134443222233222100135563232002321100113310046274334033566579785
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCC--CCCCCC
Q ss_conf 7778876668999987589964365612376653-33555566778788878764720015777886-8999--989984
Q 002800 771 RSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWK-EWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLE-TLPD--DYLPQL 846 (879)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~-~lp~--~~l~~L 846 (879)
.|.+++..+ ..+..+++|+.|+++++ .++ .++. .+..+++|+.|++++| +++ .+|. ..+++|
T Consensus 641 ~N~l~g~ip----~~l~~l~~L~~L~Ls~N-~l~g~ip~--------~l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 641 YNMLSGYIP----KEIGSMPYLFILNLGHN-DISGSIPD--------EVGDLRGLNILDLSSN-KLDGRIPQAMSALTML 706 (768)
T ss_dssp SSCCBSCCC----GGGGGCTTCCEEECCSS-CCCSCCCG--------GGGGCTTCCEEECCSS-CCEECCCGGGGGCCCC
T ss_pred CCCCCCCCC----HHHHCCCCCCEEECCCC-CCCCCCCH--------HHHCCCCCCEEECCCC-CCCCCCCHHHHCCCCC
T ss_conf 880155587----78841415787848688-03887896--------7847778998989788-0238688677578878
Q ss_pred CEEEEEECCC----------------------------HHHHH-HHCCCCCCCCEEEEC
Q ss_conf 4899910675----------------------------17765-302575354000101
Q 002800 847 LDLKIFSCPK----------------------------LEERY-KEGTAERGNISHVHL 876 (879)
Q Consensus 847 ~~L~i~~c~~----------------------------l~~~~-~~~~~~~~~i~~i~~ 876 (879)
+.|++++|+- +. .| ....++|+|++|+|-
T Consensus 707 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~~~ 764 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRSHH 764 (768)
T ss_dssp SEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC------------
T ss_pred CEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCCCCCCCCCCCCCC
T ss_conf 9787968815560899601024897775698321088776-788876688898887656
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=227.02 Aligned_cols=346 Identities=16% Similarity=0.159 Sum_probs=218.5
Q ss_pred CCCEEEEEEEECCCCC------------------CCCCCC--CCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCEEECC
Q ss_conf 9973699988315688------------------962324--89973199940699854453516652369943388869
Q 002800 442 NENIQHLMIKFETERK------------------FPTSVY--NRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLS 501 (879)
Q Consensus 442 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 501 (879)
..+++.|.+..+.+.. +|..+. ++++|+.|.+.+| .+...+|..+.++++|++|+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC---PNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC---TTCSSCCTTTTTCSSCCEEECT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCC---CCCCCCHHHHHCCCCCCEEECC
T ss_conf 6478789886882366423221222221001024863220044687888980488---5776283888349997889784
Q ss_pred CCCCCCCCC-CC--CCCCCCCCC------CCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHHHCCC
Q ss_conf 998743223-32--137111167------7897896026888732480--002689875882167545552424310245
Q 002800 502 NQDNGFYNV-IK--RVPRGIRKL------LHLRYLNLSRNSKIAELPE--SLCDLYNLETMELSWCISLKRLPQRMGQLI 570 (879)
Q Consensus 502 ~~~~~~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~l~~L~ 570 (879)
+ +. +. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|...+.+| .++.++
T Consensus 282 ~------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 282 C------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp T------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred C------CCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCC-CCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCC
T ss_conf 7------9887665335788754304657888889897993-7766765554257888989690880705166-647889
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCCCCC-
Q ss_conf 665575278426547835889889-985894220456798866680123254147873487234887921000100377-
Q 002800 571 NLWHLVNDGTSLSYMPKGIERLTC-LRTLNEFIVSVGSDDDKACKLECLKSLNHLRGSLKIKKLGNVSKDEINKAELGK- 648 (879)
Q Consensus 571 ~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~- 648 (879)
+|++|++++|.+..+|..++.+++ |+.|.+..+..... +..+..
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l----------------------------------p~~~~~~ 399 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI----------------------------------PNIFDAK 399 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC----------------------------------CSCCCTT
T ss_pred CCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCC----------------------------------CHHHHHC
T ss_conf 889898989940303375651023686898529827544----------------------------------6655333
Q ss_pred -CCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCC--
Q ss_conf -65656089981268788999875475603898889966899954169965861221014785885708888898999--
Q 002800 649 -KENLLALYLSLEKDREKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR-- 725 (879)
Q Consensus 649 -~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-- 725 (879)
+++|+.|+++.|......+.... .........++|+.|+++++....+++..+..+++|+.|++++|... .+|.
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~--~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFD--PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSC--TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS
T ss_pred CCCCCCEEECCCCCCCCCCHHHHC--CCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHH
T ss_conf 457668897748857886524420--02201125898888977279668678788715898898989799788-739788
Q ss_pred CC-------CCCCCCEEECCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 99-------97766630002221232756666678300010013465335667778876668999987589964365612
Q 002800 726 LG-------ELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQ 798 (879)
Q Consensus 726 l~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 798 (879)
+. ++++|+.|+++++. ++.++..+. ...+..++.++++.|.+.+++. .+..+++|+.|+++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~------~~~l~~L~~L~Ls~N~l~~ip~-----~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR------ATTLPYLVGIDLSYNSFSKFPT-----QPLNSSTLKGFGIR 544 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSC-CCBCCGGGS------TTTCTTCCEEECCSSCCSSCCC-----GGGGCSSCCEEECC
T ss_pred HCCCCCCCCCCCCCCEEECCCCC-CCCCCHHHH------HCCCCCCCEEECCCCCCCCCCH-----HHHCCCCCCEEECC
T ss_conf 40440012214773389896993-881685453------4458876989898998877682-----35308887878898
Q ss_pred CCC------CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 376------6533355556677878887876472001577788689999899844899910675
Q 002800 799 KMK------GWKEWKYSVTTSTWPHDRLMPRLCSLTIGFCPKLETLPDDYLPQLLDLKIFSCPK 856 (879)
Q Consensus 799 ~~~------~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~l~~L~~L~i~~c~~ 856 (879)
++. -...++. .+..+++|+.|.+.+| .++.+|....++|+.|++++|+-
T Consensus 545 ~N~~ls~N~l~~~~p~--------~l~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 545 NQRDAQGNRTLREWPE--------GITLCPSLTQLQIGSN-DIRKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp SCBCTTCCBCCCCCCT--------TGGGCSSCCEEECCSS-CCCBCCSCCCTTCCEEECCSCTT
T ss_pred CCCCCCCCCCCCCCHH--------HHHCCCCCCEEECCCC-CCCCCCHHHHCCCCEEECCCCCC
T ss_conf 8866566731212737--------7856998788989899-47705976838678998769987
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=225.95 Aligned_cols=353 Identities=14% Similarity=0.169 Sum_probs=196.7
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCC-----------------CHHHHHC--CCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 96232489973199940699854453-----------------5166523--6994338886999874322332137111
Q 002800 458 FPTSVYNRKRLRSLVVERGEGFMTGI-----------------NLSALFD--NLTCLRSLDLSNQDNGFYNVIKRVPRGI 518 (879)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~~l~--~l~~L~~L~L~~~~~~~~~~l~~lp~~~ 518 (879)
+|..+.++++|+.|.+.++. +.. .+|..++ ++++|++|++++ |.....+|..+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~---Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~-----N~l~~~iP~~l 511 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP---FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN-----CPNMTQLPDFL 511 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES-----CTTCCSCCGGG
T ss_pred HHHHHHCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCC-----CCCCCCCHHHH
T ss_conf 11887569998789796886---78874653223322222244587444025599977898718-----98875273877
Q ss_pred CCCCCCCEEECCCCC-CCC-CCCCCCCCCC-------CCCEEECCCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 167789789602688-873-2480002689-------875882167545552424--31024566557527842654783
Q 002800 519 RKLLHLRYLNLSRNS-KIA-ELPESLCDLY-------NLETMELSWCISLKRLPQ--RMGQLINLWHLVNDGTSLSYMPK 587 (879)
Q Consensus 519 ~~l~~L~~L~l~~~~-~~~-~lp~~~~~l~-------~L~~L~l~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~ 587 (879)
+++++|++|++++|. ... .+|..++++. +|++|++++| .+..+|. .++++++|++|++++|.+..+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp- 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE- 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-
T ss_pred HCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECC-CCCCCCCHHHHHCCCCCCEEECCCCCCCCCH-
T ss_conf 37999899989689876566461778752330155688319982289-4776187235515898898989799825621-
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCHHCCCCCCCCCC--CCCCEEEEEECCCCC
Q ss_conf 588988998589422045679886668012325414-78734872348879210001003776--565608998126878
Q 002800 588 GIERLTCLRTLNEFIVSVGSDDDKACKLECLKSLNH-LRGSLKIKKLGNVSKDEINKAELGKK--ENLLALYLSLEKDRE 664 (879)
Q Consensus 588 ~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~-L~~~L~i~~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~ 664 (879)
.++.+++|+.|.+..+.....+ .. +..+.. |+ .|.+.+ .... ..+..+... ++|+.|+++.|....
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp---~~---l~~l~~~L~-~L~Ls~---N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIP---ED---FCAFTDQVE-GLGFSH---NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCC---TT---SCEECTTCC-EEECCS---SCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred HHCCCCCCEEEECCCCCCCCCH---HH---HHHCCCCCC-EEECCC---CCCC-CCCHHHHCCCCCCCCEEECCCCCCCC
T ss_conf 2247985007987187125035---87---752511498-999849---9787-47644522556777889770884788
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCC-C--------CCCCCCCEE
Q ss_conf 8999875475603898889966899954169965861221014785885708888898999-9--------997766630
Q 002800 665 KGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINLEQLPR-L--------GELPSLESL 735 (879)
Q Consensus 665 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-l--------~~l~~L~~L 735 (879)
..+... ..+. ....++|+.|+++++....+++.++..+++|+.|++++|... .+|. + .++++|+.|
T Consensus 659 ~ip~l~---~~l~-~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 659 EGRNIS---CSMD-DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp TSSSCS---SCTT-TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEE
T ss_pred CCCCCH---HHHC-CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEE
T ss_conf 643200---0000-135797688983199688659788713898899989899688-54967845553343214871589
Q ss_pred ECCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC------CCCCCCC
Q ss_conf 0022212327566666783000100134653356677788766689999875899643656123766------5333555
Q 002800 736 TVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKG------WKEWKYS 809 (879)
Q Consensus 736 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~------l~~~~~~ 809 (879)
++++|. +..++..+. ...+..++.++++.|.+.+++. .+..+++|+.|++++|+. ...++.
T Consensus 734 ~Ls~N~-L~~lp~~l~------~~~l~~L~~L~Ls~N~L~~lp~-----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~- 800 (876)
T 4ecn_A 734 DLRFNK-LTSLSDDFR------ATTLPYLSNMDVSYNCFSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPT- 800 (876)
T ss_dssp ECCSSC-CCCCCGGGS------TTTCTTCCEEECCSSCCSSCCC-----GGGGCTTCCEEECCCCBCTTCCBCCCCCCT-
T ss_pred ECCCCC-CCCCHHHHH------HCCCCCCCEEEECCCCCCCCCH-----HHHCCCCCCEEECCCCCCCCCCCCCCCCHH-
T ss_conf 888997-866527762------4427986989908997876105-----661599988998879977665632444868-
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCH
Q ss_conf 566778788878764720015777886899998998448999106751
Q 002800 810 VTTSTWPHDRLMPRLCSLTIGFCPKLETLPDDYLPQLLDLKIFSCPKL 857 (879)
Q Consensus 810 ~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~l~~L~~L~i~~c~~l 857 (879)
.+..+++|+.|.+.+| .+..+|....++|+.|++++|+-.
T Consensus 801 -------~l~~L~~L~~L~Ls~N-~L~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 801 -------GITTCPSLIQLQIGSN-DIRKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp -------TGGGCSSCCEEECCSS-CCCBCCSCCCSSSCEEECCSCTTC
T ss_pred -------HHHCCCCCCEEECCCC-CCCCCCHHHCCCCCEEECCCCCCC
T ss_conf -------8836998788988799-787408766287788999799888
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=218.82 Aligned_cols=383 Identities=19% Similarity=0.147 Sum_probs=189.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 99736999883156889623248997319994069985445351665236994338886999874322332-13711116
Q 002800 442 NENIQHLMIKFETERKFPTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIK-RVPRGIRK 520 (879)
Q Consensus 442 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~-~lp~~~~~ 520 (879)
..+++++.+..+.....++.+..+++|+.|.+.++ .+....+..+..+++|++|++++ +.+. .+|.. .
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n---~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~--~ 267 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN---KLSGDFSRAISTCTELKLLNISS------NQFVGPIPPL--P 267 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS---CCCSCHHHHTTTCSSCCEEECCS------SCCEESCCCC--C
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCC---CCCCCCCHHHHCCCCCCEEECCC------CCCCCCCCCC--C
T ss_conf 78689898928827887711126999998979488---58781657774488889898988------8665716724--3
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC-CCCCC-CCCCCCCCC
Q ss_conf 7789789602688873248000268-98758821675455524243102456655752784265-47835-889889985
Q 002800 521 LLHLRYLNLSRNSKIAELPESLCDL-YNLETMELSWCISLKRLPQRMGQLINLWHLVNDGTSLS-YMPKG-IERLTCLRT 597 (879)
Q Consensus 521 l~~L~~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~-~lp~~-i~~l~~L~~ 597 (879)
+++|++|++++|.....+|..+..+ ++|++|++++|.....+|..++.+++|++|++++|.+. .+|.. ++.+++|+.
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 68789897917855772588888446868899896896778423677558776677897885257379788724888878
Q ss_pred CCCEEECCC-CCCCCCCCCC-CCCC--------------------CCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCEE
Q ss_conf 894220456-7988666801-2325--------------------41478734872348879210001003776565608
Q 002800 598 LNEFIVSVG-SDDDKACKLE-CLKS--------------------LNHLRGSLKIKKLGNVSKDEINKAELGKKENLLAL 655 (879)
Q Consensus 598 L~~~~~~~~-~~~~~~~~l~-~L~~--------------------L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L 655 (879)
|.+..+... ..+.....+. .+.. +..|+ .+. +.+.......+..+..+++|+.|
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~-~L~---L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ-ELY---LQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC-EEE---CCSSEEEEECCGGGGGCTTCCEE
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCC-EEE---CCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 84847843762309898632277199862787478767666533247761-898---97784654248777568987989
Q ss_pred EEEECCCCCCCCCCC---------------CHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEECCCCCC
Q ss_conf 998126878899987---------------54756038988899668999541699658612210147858857088888
Q 002800 656 YLSLEKDREKGSTNK---------------DDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIMSLAKLRSMSLDRCINL 720 (879)
Q Consensus 656 ~l~~~~~~~~~~~~~---------------~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 720 (879)
+++.|......+... ........+..+++|+.|+++++......|.++..+++|+.|++++|...
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 89588466854677744998898989788154718978828777329990199513758878816998998975399518
Q ss_pred CCCCC-CCCCCCCCEEECCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC------------------
Q ss_conf 98999-99977666300022212327566666783000100134653356677788766689------------------
Q 002800 721 EQLPR-LGELPSLESLTVRNMRRLEKVGNEFLGIDESRLLRKDEGKVLGTDRSRSSGIEESK------------------ 781 (879)
Q Consensus 721 ~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~------------------ 781 (879)
..+|. ++.+++|++|++++|.....++.. +..+..++.++++.|.+.+..+..
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAE--------LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGG--------GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHH--------HCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCC
T ss_conf 968768856899998989789433748877--------708898998989888468827957860421223201345421
Q ss_pred ------------------------------------------------CCCCCCCCCCCCEEEECCCCCCC-CCCCCCCC
Q ss_conf ------------------------------------------------99987589964365612376653-33555566
Q 002800 782 ------------------------------------------------PSKPFVAFPRLKSLEFQKMKGWK-EWKYSVTT 812 (879)
Q Consensus 782 ------------------------------------------------~~~~~~~~p~L~~L~l~~~~~l~-~~~~~~~~ 812 (879)
....+..+++|+.|+++++ .++ .++.
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~---- 650 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPK---- 650 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCG----
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCC-CCCCCCCH----
T ss_conf 1113444322223322210013556323200232110011331004627433403356657978588-01555877----
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCC-CCCC--CCCCCCCEEEEEECCCH
Q ss_conf 778788878764720015777886-8999--98998448999106751
Q 002800 813 STWPHDRLMPRLCSLTIGFCPKLE-TLPD--DYLPQLLDLKIFSCPKL 857 (879)
Q Consensus 813 ~~~~~~~~~~~L~~L~i~~C~~L~-~lp~--~~l~~L~~L~i~~c~~l 857 (879)
.+..+++|+.|.+++| .++ .+|. +.+++|+.|++++|.--
T Consensus 651 ----~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 651 ----EIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp ----GGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ----HHHCCCCCCEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf ----8841415787848688-038878967847778998989788023
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=216.40 Aligned_cols=355 Identities=16% Similarity=0.198 Sum_probs=218.9
Q ss_pred CCCCEEEEEEEECCCCC-CCCCCCCCCCCCEEEECCCCCCCCCC-CHHHHHCCC------CCCCEEECCCCCCCCCCCCC
Q ss_conf 89973699988315688-96232489973199940699854453-516652369------94338886999874322332
Q 002800 441 SNENIQHLMIKFETERK-FPTSVYNRKRLRSLVVERGEGFMTGI-NLSALFDNL------TCLRSLDLSNQDNGFYNVIK 512 (879)
Q Consensus 441 ~~~~~r~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~l------~~L~~L~L~~~~~~~~~~l~ 512 (879)
...+++.|.+..+.... .|..+.++++|+.|.+.++.. +.. .+|..++.+ ++|++|++++ +.+.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~--l~~~~lp~~~~~L~~~~~l~~L~~L~L~~------n~l~ 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG--ISGEQLKDDWQALADAPVGEKIQIIYIGY------NNLK 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT--SCHHHHHHHHHHHHHSGGGGTCCEEECCS------SCCS
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCC--CCCCCCHHHHHHHHCCCCCCCCCEEECCC------CCCC
T ss_conf 468788898048857762838883499978897847988--76653357887543046578888898979------9377
Q ss_pred CCCC--CCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCC-CCEEECCCCCCCCCCCC
Q ss_conf 1371--11167789789602688873-24800026898758821675455524243102456-65575278426547835
Q 002800 513 RVPR--GIRKLLHLRYLNLSRNSKIA-ELPESLCDLYNLETMELSWCISLKRLPQRMGQLIN-LWHLVNDGTSLSYMPKG 588 (879)
Q Consensus 513 ~lp~--~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~L~~-L~~L~l~~~~l~~lp~~ 588 (879)
.+|. .++.+++|++|++++|. +. .+| .+..+++|++|++++| .+..+|..++.+++ |++|++++|.+..+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred CCCCHHHHCCCCCCCEEECCCCC-CCCCHH-HHCCCCCCCEEECCCC-CCCCCCHHHHHHCCCCCEEECCCCCCCCCCHH
T ss_conf 66765554257888989690880-705166-6478898898989899-40303375651023686898529827544665
Q ss_pred CCCCC--CCCCCCCEEECCCCCCCCCCCCCC--CC--CCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 88988--998589422045679886668012--32--5414787348723488792100010037765656089981268
Q 002800 589 IERLT--CLRTLNEFIVSVGSDDDKACKLEC--LK--SLNHLRGSLKIKKLGNVSKDEINKAELGKKENLLALYLSLEKD 662 (879)
Q Consensus 589 i~~l~--~L~~L~~~~~~~~~~~~~~~~l~~--L~--~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 662 (879)
++.++ +|+.|.+..+..... ....+.. .. .+..|+ .|. +............+..+++|+.|+++.|..
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~L~-~L~---Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFKGINVS-SIN---LSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCCCCCEE-EEE---CCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred HHHCCCCCCCEEECCCCCCCCC--CHHHHCCCCCCCCCCCCCC-EEE---CCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 5333457668897748857886--5244200220112589888-897---727966867878871589889898979978
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHH--CCCCCCEEEECCCCCCCCCC-CCCCCCCCCEEECCC
Q ss_conf 788999875475603898889966899954169965861221--01478588570888889899-999977666300022
Q 002800 663 REKGSTNKDDEDALEGLQVPPNLERLEIFYHRGNTLSSIFIM--SLAKLRSMSLDRCINLEQLP-RLGELPSLESLTVRN 739 (879)
Q Consensus 663 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~ 739 (879)
.. .+..... .....+..+++|+.|+++++....+ |..+. .+++|+.|++++|.... +| .+..+++|+.|++++
T Consensus 470 ~~-i~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 470 TE-IPKNSLK-DENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp SB-CCSSSSE-ETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CC-CCHHHHC-CCCCCCCCCCCCCEEECCCCCCCCC-CHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCC
T ss_conf 87-3978840-4400122147733898969938816-854534458876989898998877-682353088878788988
Q ss_pred CCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21232756666678300010013465335667778876668999987589964365612376653335555667787888
Q 002800 740 MRRLEKVGNEFLGIDESRLLRKDEGKVLGTDRSRSSGIEESKPSKPFVAFPRLKSLEFQKMKGWKEWKYSVTTSTWPHDR 819 (879)
Q Consensus 740 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 819 (879)
+..+ +.|.+.+..+ ..+..+++|+.|++++| .++.++. .
T Consensus 546 N~~l--------------------------s~N~l~~~~p----~~l~~l~~L~~L~Ls~N-~l~~ip~--------~-- 584 (636)
T 4eco_A 546 QRDA--------------------------QGNRTLREWP----EGITLCPSLTQLQIGSN-DIRKVNE--------K-- 584 (636)
T ss_dssp CBCT--------------------------TCCBCCCCCC----TTGGGCSSCCEEECCSS-CCCBCCS--------C--
T ss_pred CCCC--------------------------CCCCCCCCCH----HHHHCCCCCCEEECCCC-CCCCCCH--------H--
T ss_conf 8665--------------------------6673121273----77856998788989899-4770597--------6--
Q ss_pred CCCCCCEEECCCCCCCCCCCCCC-----------CCCCCEEEEEECCCHH
Q ss_conf 78764720015777886899998-----------9984489991067517
Q 002800 820 LMPRLCSLTIGFCPKLETLPDDY-----------LPQLLDLKIFSCPKLE 858 (879)
Q Consensus 820 ~~~~L~~L~i~~C~~L~~lp~~~-----------l~~L~~L~i~~c~~l~ 858 (879)
.+++|+.|.+.+|+ +..++... +...+..+|.+|+.|+
T Consensus 585 ~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 585 ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred HHCCCCEEECCCCC-CCCCCHHHCCHHHHCCCCEEECCCCCCCCCCCCCC
T ss_conf 83867899876998-76336786201122661003437754347986110
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=214.33 Aligned_cols=149 Identities=16% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCCCCCCCCEEEEEEEECCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 45799899736999883156889-62324899731999406998544535166523699433888699987432233213
Q 002800 436 MCPLESNENIQHLMIKFETERKF-PTSVYNRKRLRSLVVERGEGFMTGINLSALFDNLTCLRSLDLSNQDNGFYNVIKRV 514 (879)
Q Consensus 436 ~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l 514 (879)
.+|...+..++++.++++.+... +..+..+++|++|++.++ .+....+..|.++++|++|++++ +.+..+
T Consensus 26 ~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---~i~~~~~~~~~~l~~L~~L~Ls~------n~l~~~ 96 (606)
T 3t6q_A 26 EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC---QIYWIHEDTFQSQHRLDTLVLTA------NPLIFM 96 (606)
T ss_dssp SCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC---CCCEECTTTTTTCTTCCEEECTT------CCCSEE
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCC---CCCEECHHHCCCCCCCCEEECCC------CCCCCC
T ss_conf 286778986758981587347179667256766528978898---35524851136843367644889------856545
Q ss_pred -CCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCC--CHHHHCCCCCCEEECCCCCCCCCC-CCC
Q ss_conf -711116778978960268887324-800026898758821675455524--243102456655752784265478-358
Q 002800 515 -PRGIRKLLHLRYLNLSRNSKIAEL-PESLCDLYNLETMELSWCISLKRL--PQRMGQLINLWHLVNDGTSLSYMP-KGI 589 (879)
Q Consensus 515 -p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~l--p~~l~~L~~L~~L~l~~~~l~~lp-~~i 589 (879)
|..++.+++|++|++++|. +..+ |..+.++++|++|++++| .+..+ |. +..+++|++|++++|.+..++ ..+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHH
T ss_pred CHHHHCCCCCCCEEECCCCC-CCCCCCCHHCCCCCCCEEECCCC-CCCCCCCCC-CCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 86552344215376521267-66578101223782238988798-341147654-5687656877765684455496563
Q ss_pred CCCCCCC
Q ss_conf 8988998
Q 002800 590 ERLTCLR 596 (879)
Q Consensus 590 ~~l~~L~ 596 (879)
+.+++|+
T Consensus 174 ~~l~~L~ 180 (606)
T 3t6q_A 174 SSLQQAT 180 (606)
T ss_dssp HTTTTCC
T ss_pred HHHCCCC
T ss_conf 3221564
Done!