BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002801
(879 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE AA+ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLAASSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 145 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 258 GSEDNLVYIWN 268
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 240
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 284
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 282
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G+
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 145 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 258 GSEDNMVYIWN 268
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 240
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQ--TKEIV----QKLQGHTDV 284
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI-VQKLQGHT 282
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 23/252 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 53 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 106 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH-NKTVSYVK 753
+ T+ ++ V V F D G + S D +D + + L TLI N VS+VK
Sbjct: 164 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVK 221
Query: 754 FV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVA 809
F + +++A+ DNTLKLWD S L ++TGH N K F SV G ++
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKC------LKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 810 TGSETNEVFVYH 821
+GSE N V++++
Sbjct: 276 SGSEDNLVYIWN 287
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 202
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 259
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 260 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 303
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 242
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 301
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 302 DVVISTACHPTENIIASAALENDKTIKLW 330
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 23/252 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 55 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 108 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 165
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH-NKTVSYVK 753
+ T+ ++ V V F D G + S D +D + + L TLI N VS+VK
Sbjct: 166 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVK 223
Query: 754 FV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVA 809
F + +++A+ DNTLKLWD S L ++TGH N K F SV G ++
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKC------LKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 810 TGSETNEVFVYH 821
+GSE N V++++
Sbjct: 278 SGSEDNLVYIWN 289
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 204
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 261
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 262 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 305
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 244
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 245 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 303
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 304 DVVISTACHPTENIIASAALENDKTIKLW 332
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 148 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 261 GSEDNLVYIWN 271
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 243
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 287
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 227 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 285
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 145 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 258 GSEDNLVYIWN 268
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 240
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 284
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 282
Query: 747 KTV 749
V
Sbjct: 283 DVV 285
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 48 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 101 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 159 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 218 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 272 GSEDNLVYIWN 282
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 197
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 254
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 255 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 298
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 237
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 238 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 296
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 297 DVVISTACHPTENIIASAALENDKTIKLW 325
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 148 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 261 GSEDNLVYIWN 271
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 243
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 287
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 227 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 285
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 145 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 258 GSEDNLVYIWN 268
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 240
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 284
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 282
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KL+
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLY 311
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 27 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 80 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 137
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 138 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 197 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 251 GSEDNLVYIWN 261
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 176
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 233
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 234 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 277
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 216
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 217 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 275
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 276 DVVISTACHPTENIIASAALENDKTIKLW 304
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 84 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 142 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 255 GSEDNLVYIWN 265
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 180
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 237
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 281
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 220
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 279
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLW 308
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 148 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 261 GSEDNLVYIWN 271
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 243
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 287
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 227 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 285
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 32 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 85 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 143 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 256 GSEDNLVYIWN 266
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 181
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 238
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 239 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 282
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 221
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 222 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 280
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 281 DVVISTACHPTENIIASAALENDKTIKLW 309
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 84 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 142 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 255 GSEDNLVYIWN 265
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 180
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 237
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 281
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 220
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 279
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLW 308
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 36 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 89 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 147 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 206 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 260 GSEDNLVYIWN 270
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 185
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 242
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 243 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 286
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 225
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 226 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 284
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 285 DVVISTACHPTENIIASAALENDKTIKLW 313
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 30 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G
Sbjct: 83 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 141 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DNTLKLWD S L ++TGH N K F SV G ++ +
Sbjct: 200 SPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 254 GSEDNLVYIWN 264
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 179
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F +G+ + + D+ + +D K L T GH K
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEK 236
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 237 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 280
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 219
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 220 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 278
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 279 DVVISTACHPTENIIASAALENDKTIKLW 307
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W + G+
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 696 IGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++ V V F D G + S D +D + + + N VS+VKF
Sbjct: 145 LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVWDG-YVAT 810
+ +++A+ DN LKLWD S L ++TGH N K F SV G ++ +
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 811 GSETNEVFVYH 821
GSE N V++++
Sbjct: 258 GSEDNMVYIWN 268
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 GVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
G + T+ N V V+F + G+ + + D+ + +D K L T GH K
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNDLKLWDYSKGKC-LKTYTGH-KNEK 240
Query: 751 YVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 795
Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQ--TKEIV----QKLQGHTDV 284
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D +KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWD 223
Query: 690 INQGVSIGTIKTKAN-VCCV--QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
++G + T N C+ F + G+ + GS D+ +Y ++L+ +I + L GH
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI-VQKLQGHT 282
Query: 747 KTVSYVKFVDATTLVSAST---DNTLKLW 772
V +++++ D T+KLW
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 741 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 24/249 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ NR+ S ++ + + ++ IAS
Sbjct: 229 FSPDGQTIASASDDKTVKLW--------NRNGQLLQTLTGHSSSVNGVAFRPDGQT-IAS 279
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
++ + V++W+ Q+L + H VW + FS D +AS SDD +VKLW+ N G
Sbjct: 280 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRN-GQH 336
Query: 696 IGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ ++V V F D G+++A S D + ++ RN ++ L TL GH+ +V V F
Sbjct: 337 LQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAF 393
Query: 755 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSE 813
D T+ SAS D T+KLW+ + L + TGH++ V S D +A+ S+
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQL-------LQTLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 814 TNEVFVYHK 822
V ++++
Sbjct: 447 DKTVKLWNR 455
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 119/248 (47%), Gaps = 22/248 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 115
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
++ + V++W+ Q+L + H VW + FS D +AS SDD +VKLW+ N +
Sbjct: 116 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLL 173
Query: 696 IGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV 755
++V V F D G+++A S D + ++ RN ++ L TL GH+ +V V F
Sbjct: 174 QTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFS 230
Query: 756 -DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSET 814
D T+ SAS D T+KLW+ + L + TGH++ N V +A+ S+
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQL-------LQTLTGHSSSVNGVAFRPDGQTIASASDD 283
Query: 815 NEVFVYHK 822
V ++++
Sbjct: 284 KTVKLWNR 291
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 15/199 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 402
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
++ + V++W+ Q+L + H VW + FS D T+ AS SDD +VKLW+ N +
Sbjct: 403 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQLL 460
Query: 696 IGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV 755
++V V F D G+++A S D + ++ RN ++ L TL GH+ +V V F
Sbjct: 461 QTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFS 517
Query: 756 -DATTLVSASTDNTLKLWD 773
D T+ SAS D T+KLW+
Sbjct: 518 PDGQTIASASDDKTVKLWN 536
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 21/202 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN---SYIKSQ 632
F DG+ A+A +K +K++ + + + H SS W S
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------------SSSVWGVAFSPDDQT 440
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
IAS++ + V++W+ Q+L + H V + FS D +AS SDD +VKLW+ N
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNG 498
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYV 752
+ ++V V F D G+++A S D + ++ RN ++ L TL GH+ +V V
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGV 555
Query: 753 KFV-DATTLVSASTDNTLKLWD 773
F D T+ SAS+D T+KLW+
Sbjct: 556 AFSPDGQTIASASSDKTVKLWN 577
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLDSG 715
+ H V + FS D +AS SDD +VKLW+ N + ++V V F D G
Sbjct: 12 LEAHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD-G 69
Query: 716 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDL 774
+++A S D + ++ RN ++ L TL GH+ +V V F D T+ SAS D T+KLW+
Sbjct: 70 QTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 775 SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK 822
+ L + TGH++ V S +A+ S+ V ++++
Sbjct: 128 NGQL-------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 29/279 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC-----------DAIINENRDIHYPVVEMASRSKLSSIC 624
F DGE + A G NK +V+ D+ N++ + +S + S+C
Sbjct: 72 FSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 625 WNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID-FSSADPTLLASGSDDG 683
++ K +A+ + ++++WD+ +++ ++ HE+ ++S+D F S D L SGS D
Sbjct: 131 FSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LVSGSGDR 187
Query: 684 SVKLWSINQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI------ 737
+V++W + G T+ + V V G+ +A GS D + +D +
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 738 PLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS------FT 790
+ GH +V V F D ++VS S D ++KLW+L ++ +S +
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 791 GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPAL 829
GH + V + D Y+ +GS+ V + K P L
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 98/264 (37%), Gaps = 92/264 (34%)
Query: 67 SLRQWL------DKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSF 118
+L+ W+ ++ +RSV CLHIF QI E V HS+G++ +++PS F M
Sbjct: 101 NLKDWMNGRCTIEERERSV----CLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDV 156
Query: 119 NHVSFIEXXXXXXXXXXXHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT 178
V D LVTA
Sbjct: 157 VKVG-----------------------------------------------DFGLVTAMD 169
Query: 179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWY 238
D E + + AY H QV K Y
Sbjct: 170 QDEEEQTVLTPMPAYARH------------------TGQVGTK---------------LY 196
Query: 239 ASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKE 298
SPE++ G S DI+ LG++LFEL PFST E+ RT++ +R+ PP K+P E
Sbjct: 197 MSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCE 256
Query: 299 ASFCLWLLHPEPSGRPKMGELLQS 322
+L P P RP+ ++++
Sbjct: 257 YVMVQDMLSPSPMERPEAINIIEN 280
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 87/241 (36%), Gaps = 82/241 (34%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSFNHVSFIEXXXXXXXXXXXHEEGL 141
CLHIF QI E V HS+G++ +++PS F M V
Sbjct: 166 CLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVG------------------- 206
Query: 142 NTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVE 201
D LVTA D E + + AY TH V
Sbjct: 207 ----------------------------DFGLVTAMDQDEEEQTVLTPMPAYATHXGQVG 238
Query: 202 GMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL 261
T Y SPE++ G S DI+ LG++
Sbjct: 239 ---------------------------------TKLYMSPEQIHGNNYSHKVDIFSLGLI 265
Query: 262 LFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
LFEL FST E+ R ++ +R+ P K+P+E +L P P+ RP+ ++++
Sbjct: 266 LFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325
Query: 322 S 322
+
Sbjct: 326 N 326
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+IAS + +QV+ + L E++ HE V FS+ D +A+ S D VK+W+
Sbjct: 635 RIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST-DDRFIATCSVDKKVKIWNSM 693
Query: 692 QGVSIGTIKTKA-NVCCVQFPLDSGRSL-AFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 749
G + T + V C F S L A GS+D + +DL N K T+ GH +V
Sbjct: 694 TGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSV 752
Query: 750 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSR 780
++ +F D L S S D TLKLWD + R
Sbjct: 753 NHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSA 671
++ + +++S C + +++ IA + G +++ ++ +++ +H++ VW I F++
Sbjct: 962 IDYLTEAQVSCCCLSPHLQ-YIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 672 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
+ TL++S SDD +++W+ I + V F L L S D + ++
Sbjct: 1021 EKTLISS-SDDAEIQVWNWQLDKCIFLRGHQETV--KDFRLLKNSRLLSWSFDGTVKVWN 1077
Query: 732 LRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFT 790
+ + H TV DAT S S D T K+W + PLH
Sbjct: 1078 IITGNKEK-DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL------LPLHELR 1130
Query: 791 GHTNVKNFVGLSVWDGYVATGSETNEVFVY 820
GH SV +ATG + E+ ++
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 24/213 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F D A V+KK+K++ +++ E + E + + NS +A+
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--NSMTGELVHTYDEHSEQVNCCHFT----NSSHHLLLAT 724
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQ 692
+ + +++WD+++ + M H V FS D LLAS S DG++KLW S N+
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDKLLASCSADGTLKLWDATSANE 783
Query: 693 GVSIGTIKTKAN-----------VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT 741
SI + N V C + D R + +A ++I+ +D+ S +
Sbjct: 784 RKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMV--AAKNKIFLFDIHTSGLLGEI 841
Query: 742 LIGHNKTVSYVKFVDATTL-VSASTDNTLKLWD 773
GH+ T+ Y F L V A + ++LW+
Sbjct: 842 HTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
C S+ ++ +S++ + ++W L E+R H V FS D TLLA+G D+G
Sbjct: 1097 CDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNG 1155
Query: 684 SVKLWSINQG 693
+++W+++ G
Sbjct: 1156 EIRIWNVSNG 1165
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+IAS + +QV+ + L +++ HE V FSS D + +A+ S D VK+W
Sbjct: 636 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSA 694
Query: 692 QGVSIGTIKTKA-NVCCVQFPLDSGRSL-AFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 749
G + T + V C F S L A GS D + +DL N K T+ GH +V
Sbjct: 695 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSV 753
Query: 750 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSR 780
++ +F D L S S D TL+LWD+ R
Sbjct: 754 NHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 47/323 (14%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
F DG F A ++ I+V+E D + EN + V
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 612 ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
++ +++S C + +++ +A + +G +++ ++ ++V + H++ V
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1015
Query: 666 IDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADH 725
I F +AD L S S+D +++W+ G + + V F L L S D
Sbjct: 1016 IQF-TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV--KDFRLLQDSRLLSWSFDG 1072
Query: 726 RIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTP 785
+ +++ +I +S DAT S S D T K+W + +P
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL------SP 1126
Query: 786 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE-T 844
LH GH S+ +ATG + E+ +++ + + P+S E T
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-----LHSCAPISVEEGT 1181
Query: 845 DDAAQFISSVCWRGQSSNTLVAA 867
+++ VC+ S TLV+A
Sbjct: 1182 ATHGGWVTDVCF-SPDSKTLVSA 1203
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW+V ++ + H+ V S SS D T +S S D + K+WS
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF 1121
Query: 691 NQGVSIGTIKTKANVC--CVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-----PLCTLI 743
+ + +K N C C F LD G LA G + I +++ + ++ P+
Sbjct: 1122 DLLSPLHELKGH-NGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1179
Query: 744 G---HNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
G H V+ V F D+ TLVSA LK W+++ D+ +T TN+K
Sbjct: 1180 GTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG-----DSSQTFYTNGTNLKKI 1231
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 26/215 (12%)
Query: 576 FDRDGELFAAAGVNKKIKVFE-CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIA 634
F D A +KK+K+++ + D H V + S+ ++
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-----HLLLATG 726
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGV 694
S++F +++WD+++ + M H V FS D LLAS S DG+++LW +
Sbjct: 727 SNDF--FLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSAN 783
Query: 695 SIGTIKTK--------------ANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 740
+I K V C + D + + +A +++ +D+ S +
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV--AAKNKVLLFDIHTSGLLAE 841
Query: 741 TLIGHNKTVSYVKFVDATTL-VSASTDNTLKLWDL 774
GH+ T+ Y F L V A + ++LW++
Sbjct: 842 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+IAS + +QV+ + L +++ HE V FSS D + +A+ S D VK+W
Sbjct: 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSA 687
Query: 692 QGVSIGTIKTKA-NVCCVQFPLDSGRSL-AFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 749
G + T + V C F S L A GS D + +DL N K T+ GH +V
Sbjct: 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSV 746
Query: 750 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSR 780
++ +F D L S S D TL+LWD+ R
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 47/323 (14%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
F DG F A ++ I+V+E D + EN + V
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 612 ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
++ +++S C + +++ +A + +G +++ ++ ++V + H++ V
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008
Query: 666 IDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADH 725
I F +AD L S S+D +++W+ G + + V F L L S D
Sbjct: 1009 IQF-TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV--KDFRLLQDSRLLSWSFDG 1065
Query: 726 RIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTP 785
+ +++ +I +S DAT S S D T K+W + +P
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL------SP 1119
Query: 786 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE-T 844
LH GH S+ +ATG + E+ +++ + + P+S E T
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-----LHSCAPISVEEGT 1174
Query: 845 DDAAQFISSVCWRGQSSNTLVAA 867
+++ VC+ S TLV+A
Sbjct: 1175 ATHGGWVTDVCF-SPDSKTLVSA 1196
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW+V ++ + H+ V S SS D T +S S D + K+WS
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF 1114
Query: 691 NQGVSIGTIKTKANVC--CVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-----PLCTLI 743
+ + +K N C C F LD G LA G + I +++ + ++ P+
Sbjct: 1115 DLLSPLHELKGH-NGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172
Query: 744 G---HNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
G H V+ V F D+ TLVSA LK W+++ D+ +T TN+K
Sbjct: 1173 GTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG-----DSSQTFYTNGTNLKKI 1224
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 26/215 (12%)
Query: 576 FDRDGELFAAAGVNKKIKVFE-CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIA 634
F D A +KK+K+++ + D H V + S+ ++
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-----HLLLATG 719
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGV 694
S++F +++WD+++ + M H V FS D LLAS S DG+++LW +
Sbjct: 720 SNDF--FLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSAN 776
Query: 695 SIGTIKTK--------------ANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 740
+I K V C + D + + +A +++ +D+ S +
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV--AAKNKVLLFDIHTSGLLAE 834
Query: 741 TLIGHNKTVSYVKFVDATTL-VSASTDNTLKLWDL 774
GH+ T+ Y F L V A + ++LW++
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VWD++ +++T+++ H V S+ S D +L AS DG +LW + +
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS-PDGSLCASSDKDGVARLWDLTK 227
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKT---- 748
G ++ + A + Q R + + I +DL N I + H +
Sbjct: 228 GEALSEMAAGAPI--NQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIV 285
Query: 749 ---VSYVKFVDATTLVSASTDNTLKLWDLS 775
VS D +TL S TDN +++W +S
Sbjct: 286 PECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGV 694
S++++ +++W++ Q + H + V S+ F S D + SG D ++++W++ +G
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF-SPDNRQIVSGGRDNALRVWNV-KGE 141
Query: 695 SIGTIKTKAN---VCCVQF-PLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS 750
+ T+ A+ V CV+F P + G D+ + +DL ++ + L GH V+
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVT 200
Query: 751 YVKFV-DATTLVSASTDNTLKLWDLS 775
V D + S+ D +LWDL+
Sbjct: 201 SVTVSPDGSLCASSDKDGVARLWDLT 226
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 678 SGSDDGSVKLWSINQG-VSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 736
S S D S++LW++ G + +V V F D+ R + G D+ + ++++
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN-RQIVSGGRDNALRVWNVKGEC 142
Query: 737 IPLCTLIGHNKTVSYVKF---VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT 793
+ + H VS V+F +DA +VS DN +K+WDL+ T R++ GHT
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA--TGRLVT----DLKGHT 196
Query: 794 NVKNFVGLSVWDGYVATGSETNEV 817
N V +S DG + S+ + V
Sbjct: 197 NYVTSVTVSP-DGSLCASSDKDGV 219
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y ++ S ++ +V+VWD L ++ H RV+S+ F D + SGS D S+++
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRV 303
Query: 688 WSINQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 747
W + G I T+ ++ D+ L G+AD + +D++ + L TL G NK
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQC-LQTLQGPNK 360
Query: 748 TVSYVKFV--DATTLVSASTDNTLKLWDL 774
S V + + ++++S D T+KLWDL
Sbjct: 361 HQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 39/255 (15%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
+ ++I S + + ++VW + L + H VWS S ++ SGS D ++K+
Sbjct: 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKV 183
Query: 688 WSINQGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN 746
W+ G I T+ + V C+ + + GS D + +D+ + L L+GH
Sbjct: 184 WNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQC-LHVLMGHV 239
Query: 747 KTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN---VKNFVGLSV 803
V V++ D +VS + D +K+WD +T LH+ GHTN F G+ V
Sbjct: 240 AAVRCVQY-DGRRVVSGAYDFMVKVWDPET------ETCLHTLQGHTNRVYSLQFDGIHV 292
Query: 804 WDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNT 863
G + T +V + + H SG E D N
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTG------HQSLTSGMELKD---------------NI 331
Query: 864 LVAANSSGNIKILEM 878
LV+ N+ +KI ++
Sbjct: 332 LVSGNADSTVKIWDI 346
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMR---EHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
+ S N + V++WD+ Q L ++ +H+ V + F + + + SDDG+VKLW
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWD 388
Query: 690 INQG 693
+ G
Sbjct: 389 LKTG 392
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQGVSIGTIKT--KANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
S+ Q T+ T + V V +PL + S D I +D + +K + TL GH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGH 227
Query: 746 NKTVSYVKFVDA-TTLVSASTDNTLKLWDLS 775
VS+ F ++S S D TLK+W+ S
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQGVSIGTIKT--KANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
S+ Q T+ T + V V +PL + S D I +D + +K + TL GH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGH 227
Query: 746 NKTVSYVKFVDA-TTLVSASTDNTLKLWDLS 775
VS+ F ++S S D TLK+W+ S
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+ ++ + G V++W+ + ++ E V + F A + GSDD +++++ N
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNT 86
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYV 752
G + + + + + GS D + ++ N+ T GH V V
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 753 KF--VDATTLVSASTDNTLKLWDLSMCT 778
F D +T S D T+K+W L T
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQST 174
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQGVSIGTIKT--KANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
S+ Q T+ T + V V +PL + S D I +D + +K + TL GH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGH 227
Query: 746 NKTVSYVKFVDAT-TLVSASTDNTLKLWDLS 775
VS+ F ++S S D TLK+W+ S
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 21/157 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+ ++ + G V++W+ + ++ E V + F A + GSDD +++++ N
Sbjct: 28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNT 86
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAF---------GSADHRIYYYDLRNSKIPLCTLI 743
G V + D RS+A GS D + ++ N+ T
Sbjct: 87 G---------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 744 GHNKTVSYVKF--VDATTLVSASTDNTLKLWDLSMCT 778
GH V V F D +T S D T+K+W L T
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 16/151 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S++ + ++VW+ S + + + H+R + + + L+ SGS D +++LW I
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC 325
Query: 693 GVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIP------LC--TLI 743
G + ++ V C++F + + G+ D +I +DL + P LC TL+
Sbjct: 326 GACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Query: 744 GHNKTVSYVKFVDATTLVSASTDNTLKLWDL 774
H+ V ++F D +VS+S D+T+ +WD
Sbjct: 383 EHSGRVFRLQF-DEFQIVSSSHDDTILIWDF 412
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y +I S + +++WD + + + H V + + D ++ +GS D +V++
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRV 197
Query: 688 WSINQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRN-SKIPL-CTLIGH 745
W +N G + T+ + ++G + S D I +D+ + + I L L+GH
Sbjct: 198 WDVNTGEMLNTLIHHCEA-VLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 746 NKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD 805
V+ V F D +VSAS D T+K+W+ S C + + GH + L D
Sbjct: 256 RAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEF------VRTLNGHK--RGIACLQYRD 306
Query: 806 GYVATGSETNEVFVY 820
V +GS N + ++
Sbjct: 307 RLVVSGSSDNTIRLW 321
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y + I + + + V+VWDV+ ++L + H V + F++ ++ + S D S+ +
Sbjct: 181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAV 237
Query: 688 WSINQGVSIGT----IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 743
W + I + +A V V F + + S D I ++ + + TL
Sbjct: 238 WDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF-VRTLN 293
Query: 744 GHNKTVSYVKFVDATTLVSASTDNTLKLWDL 774
GH + ++ +++ D +VS S+DNT++LWD+
Sbjct: 294 GHKRGIACLQYRD-RLVVSGSSDNTIRLWDI 323
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQGVSIGTIKT--KANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
S+ Q T+ T + V V +PL + S D I +D + +K + TL GH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGH 227
Query: 746 NKTVSYVKFVDAT-TLVSASTDNTLKLWDLS 775
VS+ F ++S S D TLK+W+ S
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+ ++ + G V++W+ + ++ E V + F A + GSDD +++++ N
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNT 86
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYV 752
G + + + + + GS D + ++ N+ T GH V V
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 753 KF--VDATTLVSASTDNTLKLWDLSMCT 778
F D +T S D T+K+W L T
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQST 174
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 670 SADPTLLASGSDDGSVKLWSINQGVS----IGTIKTKANVCCVQFPLDSGRSLAFGSADH 725
S+D SGS DG ++LW + GVS +G K +V V F LD+ R + S D
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK---DVLSVAFSLDN-RQIVSASRDR 494
Query: 726 RIYYYD-LRNSKIPLCTLI-GHNKTVSYVKFVDAT---TLVSASTDNTLKLWDLSMCTSR 780
I ++ L K + GH VS V+F T T+VSAS D T+K+W+LS C R
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 781 VIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 823
+ GHT + V +S A+G + V ++ A
Sbjct: 555 ------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 33/222 (14%)
Query: 576 FDRDGELFAAAGVNKKIKVF----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKS 631
F D +A ++ IK++ EC I+E + H V S + ++
Sbjct: 480 FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-------NTLQP 532
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
I S++++ V+VW++S ++ + + H V ++ S D +L ASG DG V LW +
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLA 591
Query: 692 QGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-------------- 737
+G + +++ + + + F R + +H I +DL + I
Sbjct: 592 EGKKLYSLEANSVIHALCF--SPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK 649
Query: 738 -----PLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDL 774
P T S D +TL S TD +++W +
Sbjct: 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLD-- 713
MR H V +I + ++ S S D S+ LW + + + + F D
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 714 ---SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF-VDATTLVSASTDNTL 769
G+ GS D + +DL + + +GH K V V F +D +VSAS D T+
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 770 KLWD-LSMC 777
KLW+ L C
Sbjct: 497 KLWNTLGEC 505
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
+ WNS + + S++ + V +WD++ ++ + H V + + +L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 676 LASGSDDGSVKLWSINQGVSIG----TIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
S +DD + +W + A V C+ F S LA GSAD + +D
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 732 LRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 775
LRN K+ L T H + V + + T L S+ TD L +WDLS
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
+ WNS + + S++ + V +WD++ ++ + H V + + +L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 676 LASGSDDGSVKLWSINQGVSIG----TIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
S +DD + +W + A V C+ F S LA GSAD + +D
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 732 LRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 775
LRN K+ L T H + V + + T L S+ TD L +WDLS
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS----RSQVL---TEMREHERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD+S +V+ T H V + + +L
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 676 LASGSDDGSVKLWSINQG----VSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
S +DD + +W S A V C+ F S LA GSAD + +D
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 732 LRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 775
LRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 17/151 (11%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN------QGVSIGTIKTKANVCCVQ 709
+R H++ + + ++ L S SDD ++ LW I+ + V TI T
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 710 FPLDSGRSLAFGSA--DHRIYYYDLR--NSKIPLCTLIGHNKTVSYVKF--VDATTLVSA 763
FGS D ++ +D R N+ P ++ H V+ + F L +
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 764 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 794
S D T+ LWDL R + LHSF H +
Sbjct: 293 SADKTVALWDL-----RNLKLKLHSFESHKD 318
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 330
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 331 TILASSGTDRRLNVWDLSK 349
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 644 VWDVSRSQVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSINQGVSIGTIKTK 702
VWD+ Q + HE V S+ + S D ASGSDD + +L+ + + +
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLRADREVAIYSKE 281
Query: 703 A---NVCCVQFPLDSGRSLAFGSADHRIYYYD-LRNSKIPLCTLIGHNKTVSYVKFV-DA 757
+ V F L SGR L G D+ I +D L+ S++ + L GH VS ++ D
Sbjct: 282 SIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSI--LFGHENRVSTLRVSPDG 338
Query: 758 TTLVSASTDNTLKLW 772
T S S D+TL++W
Sbjct: 339 TAFCSGSWDHTLRVW 353
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
+ VWDV + ++ + HE RV ++ S D T SGS D ++++W+
Sbjct: 307 TINVWDVLKGSRVSILFGHENRVSTLRV-SPDGTAFCSGSWDHTLRVWA 354
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 634 ASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQG 693
ASS+ + +++WD+ + + + W++ F S D LA+G+ G V ++ + G
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAF-SPDSQYLATGTHVGKVNIFGVESG 154
Query: 694 VSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYV 752
++ T+ + + + D G+ LA G+ D I +D+ K+ L TL GH + +
Sbjct: 155 KKEYSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSL 212
Query: 753 KFV-DATTLVSASTDNTLKLWDL 774
F D+ LV+AS D +K++D+
Sbjct: 213 TFSPDSQLLVTASDDGYIKIYDV 235
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+AS +G++ ++D++ ++L + H + S+ FS D LL + SDDG +K++ +
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQH 237
Query: 693 GVSIGTIKTKAN-VCCVQF 710
GT+ A+ V V F
Sbjct: 238 ANLAGTLSGHASWVLNVAF 256
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+A+ G V ++ V + + + + SI +S D LASG+ DG + ++ I
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIAT 195
Query: 693 GVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSY 751
G + T++ A + + F DS + L S D I YD++++ + TL GH V
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLA-GTLSGHASWVLN 253
Query: 752 VKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 794
V F D T VS+S+D ++K+WD+ T +H+F H +
Sbjct: 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTC------VHTFFDHQD 291
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD++ + + + + H V + + +L
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 676 LASGSDDGSVKLWSINQGVSIGTIKT----KANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
S +DD + +W + T A V C+ F S LA GSAD + +D
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 732 LRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 775
LRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQG------VSIGTIKTKANVCCVQ 709
+R H++ + + ++ L S SDD ++ LW IN + I T
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 710 FPLDSGRSLAFGSA--DHRIYYYDLRNSKI--PLCTLIGHNKTVSYVKF--VDATTLVSA 763
FGS D ++ +D RN+ P T+ H V+ + F L +
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 764 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 794
S D T+ LWDL R + LHSF H +
Sbjct: 297 SADKTVALWDL-----RNLKLKLHSFESHKD 322
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 246 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD++ + + + + H V + + +L
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 676 LASGSDDGSVKLWSINQGVSIGTIKT----KANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
S +DD + +W + T A V C+ F S LA GSAD + +D
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 732 LRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 775
LRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQG------VSIGTIKTKANVCCVQ 709
+R H++ + + ++ L S SDD ++ LW IN + I T
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 710 FPLDSGRSLAFGSA--DHRIYYYDLRNSKI--PLCTLIGHNKTVSYVKF--VDATTLVSA 763
FGS D ++ +D RN+ P T+ H V+ + F L +
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 764 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 794
S D T+ LWDL R + LHSF H +
Sbjct: 301 SADKTVALWDL-----RNLKLKLHSFESHKD 326
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 250 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 304
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD++ + + + + H V + + +L
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 676 LASGSDDGSVKLWSINQGVSIGTIKT----KANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
S +DD + +W + T A V C+ F S LA GSAD + +D
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 732 LRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 775
LRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQG------VSIGTIKTKANVCCVQ 709
+R H++ + + ++ L S SDD ++ LW IN + I T
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 710 FPLDSGRSLAFGSA--DHRIYYYDLRNSKI--PLCTLIGHNKTVSYVKF--VDATTLVSA 763
FGS D ++ +D RN+ P T+ H V+ + F L +
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 764 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 794
S D T+ LWDL R + LHSF H +
Sbjct: 299 SADKTVALWDL-----RNLKLKLHSFESHKD 324
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 248 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 302
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 55/252 (21%)
Query: 576 FDRDGELFAAAGVNKKIKV-----FEC--------------------DAIINENRDIHYP 610
FD G+L A+ + IK+ FEC D I++ +RD
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 611 VVEMASRSKLSSIC----WNSYIK-----SQIASSNFEGVVQVWDVSRSQVLTEMREHER 661
+ E+ + + + W ++ + IAS + + V+VW V+ + E+REH
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 662 RVWSIDFS------------------SADP-TLLASGSDDGSVKLWSINQGVSIGTIKTK 702
V I ++ S P L SGS D ++K+W ++ G+ + T+
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337
Query: 703 ANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF-VDATTLV 761
N G+ + + D + +D +N + + TL H V+ + F A +V
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVV 396
Query: 762 SASTDNTLKLWD 773
+ S D T+K+W+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 674 TLLASGSDDGSVKLWSINQGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDL 732
+++ S S+D ++K+W G T+K + V + F SG+ LA SAD I +D
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDF 179
Query: 733 RNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTG 791
+ + + T+ GH+ VS V + + +VSAS D T+K+W++ T + T FTG
Sbjct: 180 QGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ--TGYCVKT----FTG 232
Query: 792 H 792
H
Sbjct: 233 H 233
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 31/184 (16%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+AS + + +++WD + + M H+ V S+ + + S S D ++K+W +
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQT 223
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADH--RIYYYDLRNSKIPL------CTLIG 744
G + T + P G +A S D R++ + K L I
Sbjct: 224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 283
Query: 745 HNKTVSYVKFVDATT------------LVSASTDNTLKLWDLS--MCTSRVIDTPLHSFT 790
SY +AT L+S S D T+K+WD+S MC L +
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--------LMTLV 335
Query: 791 GHTN 794
GH N
Sbjct: 336 GHDN 339
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGV 694
S +++G +++WD++ H + V S+ FSS D + SGS D ++KLW+ GV
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-TLGV 137
Query: 695 SIGTIKTKAN---VCCVQFPLDSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLIGHNKTVS 750
T++ +++ V CV+F +S + D + ++L N K+ IGH ++
Sbjct: 138 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHIGHTGYLN 196
Query: 751 YVKFV-DATTLVSASTDNTLKLWDLS 775
V D + S D LWDL+
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLN 222
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VW+++ ++ T H + ++ S D +L ASG DG LW +N+
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNE 223
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
G + T+ + + F + +G S+ + +I +L+ I +
Sbjct: 224 GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEP 283
Query: 746 NKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 778
+ S D TL + TDN +++W +++ T
Sbjct: 284 PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 316
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 633 IASSNFEGVVQVWDVSRSQV-----LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
I S++ + + +W ++R + +R H V + SS D SGS DG+++L
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRL 89
Query: 688 WSINQGVS----IGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 743
W + G + +G K +V V F D+ R + GS D I ++ + +C
Sbjct: 90 WDLTTGTTTRRFVGHTK---DVLSVAFSSDN-RQIVSGSRDKTIKLWN----TLGVCKYT 141
Query: 744 ----GHNKTVSYVKFVDATT---LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK 796
H++ VS V+F ++ +VS D +K+W+L+ C + + GHT
Sbjct: 142 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT------NHIGHTGYL 195
Query: 797 NFVGLSVWDGYVATGSETNEVFVY 820
N V +S A+G + + ++
Sbjct: 196 NTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGV 694
S +++G +++WD++ H + V S+ FSS D + SGS D ++KLW+ GV
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-TLGV 160
Query: 695 SIGTIKTKAN---VCCVQFPLDSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLIGHNKTVS 750
T++ +++ V CV+F +S + D + ++L N K+ IGH ++
Sbjct: 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHIGHTGYLN 219
Query: 751 YVKFV-DATTLVSASTDNTLKLWDLS 775
V D + S D LWDL+
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLN 245
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VW+++ ++ T H + ++ S D +L ASG DG LW +N+
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNE 246
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
G + T+ + + F + +G S+ + +I +L+ I +
Sbjct: 247 GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEP 306
Query: 746 NKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 778
+ S D TL + TDN +++W +++ T
Sbjct: 307 PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 633 IASSNFEGVVQVWDVSRSQV-----LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
I S++ + + +W ++R + +R H V + SS D SGS DG+++L
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRL 112
Query: 688 WSINQGVS----IGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 743
W + G + +G K +V V F D+ R + GS D I ++ + +C
Sbjct: 113 WDLTTGTTTRRFVGHTK---DVLSVAFSSDN-RQIVSGSRDKTIKLWN----TLGVCKYT 164
Query: 744 ----GHNKTVSYVKFVDATT---LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK 796
H++ VS V+F ++ +VS D +K+W+L+ C + + GHT
Sbjct: 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT------NHIGHTGYL 218
Query: 797 NFVGLSVWDGYVATGSETNEVFVY 820
N V +S A+G + + ++
Sbjct: 219 NTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 595 FECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT 654
+ C A+ + RD +P V R + ++ W + SS+F+ ++VWD + Q
Sbjct: 82 YTCKAVCSIGRD--HPDVH---RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-A 135
Query: 655 EMREHERRVWSIDFS--SADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANVCCVQFP 711
++ E V+S S S L+A G+ V+L + G ++ + + V +
Sbjct: 136 DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195
Query: 712 LDSGRSLAFGSADHRIYYYDLRNSKIPLCTL---------------IGHNKTVSYVKFV- 755
LA SAD R+ +D+R + L TL HN V+ + F
Sbjct: 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255
Query: 756 DATTLVSASTDNTLKLWDLS 775
D L++ TDN ++LW+ S
Sbjct: 256 DGLHLLTVGTDNRMRLWNSS 275
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 715 GRSLAFGSADHRIYYYDLRNSK-------IPLCTLIG------HNKTVSYVKFV--DATT 759
GR + G +D I YDL NS +C+ IG H +V V++ D
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS-IGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 760 LVSASTDNTLKLWD 773
S+S D TLK+WD
Sbjct: 115 FTSSSFDKTLKVWD 128
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 704
V R Q+ T +R H +++++ + + D LL S S DG + +W + I +++
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS 98
Query: 705 --VCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVSYVKFVDAT 758
+ C P SG +A G D+ Y+L+ N ++ L GH +S +F+D
Sbjct: 99 WVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDN 155
Query: 759 TLVSASTDNTLKLWDL 774
+V++S D T LWD+
Sbjct: 156 QIVTSSGDTTCALWDI 171
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQGVSIGTI---KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 747
+G+ T ++ N C FP +G + A GS D +DLR + L T N
Sbjct: 214 REGMCRQTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 748 T--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW 804
++ V F + L+ A D+ +WD ++ R GH N + +G++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLGVTDD 323
Query: 805 DGYVATGS 812
VATGS
Sbjct: 324 GMAVATGS 331
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 704
V R Q+ T +R H +++++ + + D LL S S DG + +W + I +++
Sbjct: 51 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS 109
Query: 705 --VCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVSYVKFVDAT 758
+ C P SG +A G D+ Y+L+ N ++ L GH +S +F+D
Sbjct: 110 WVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDN 166
Query: 759 TLVSASTDNTLKLWDL 774
+V++S D T LWD+
Sbjct: 167 QIVTSSGDTTCALWDI 182
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 224
Query: 691 NQGVSIGTI---KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 747
+G+ T ++ N C FP +G + A GS D +DLR + L T N
Sbjct: 225 REGMCRQTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 280
Query: 748 T--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW 804
++ V F + L+ A D+ +WD ++ R GH N + +G++
Sbjct: 281 ICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLGVTDD 334
Query: 805 DGYVATGS 812
VATGS
Sbjct: 335 GMAVATGS 342
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 704
V R Q+ T +R H +++++ + + D LL S S DG + +W + I +++
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS 98
Query: 705 --VCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVSYVKFVDAT 758
+ C P SG +A G D+ Y+L+ N ++ L GH +S +F+D
Sbjct: 99 WVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDN 155
Query: 759 TLVSASTDNTLKLWDL 774
+V++S D T LWD+
Sbjct: 156 QIVTSSGDTTCALWDI 171
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQGVSIGTI---KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 747
+G+ T ++ N C FP +G + A GS D +DLR + L T N
Sbjct: 214 REGMCRQTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 748 T--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW 804
++ V F + L+ A D+ +WD ++ R GH N + +G++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLGVTDD 323
Query: 805 DGYVATGS 812
VATGS
Sbjct: 324 GMAVATGS 331
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 705 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 764
+ C+QF + G+ D I YD N K L L GH+ V +K+ LVS S
Sbjct: 125 ITCLQFE---DNYVITGADDKXIRVYDSINKKF-LLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 765 TDNTLKLWDL--SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETNEVFVY 820
TD T+++WD+ CT H F GH + + + + Y+ TGS N + V+
Sbjct: 181 TDRTVRVWDIKKGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 33/177 (18%)
Query: 642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 701
++V+D + L ++ H+ VW++ + A +L SGS D +V++W I +G +
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEG 201
Query: 702 -KANVCCVQF-PLDSGRSLAFGSADHRIYYYDL-RNSKIP-------------------- 738
+ V C+ + + + GS D+ ++ + L + S +P
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 739 -LCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 794
+ L GH +V V +VS S DNTL +WD++ L+ +GHT+
Sbjct: 262 FVGVLRGHXASVRTVS-GHGNIVVSGSYDNTLIVWDVAQXKC------LYILSGHTD 311
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 68/247 (27%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+ S +++ + VWDV++ + L + H R++S + + S S D ++++W
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIW---- 337
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYV 752
DL N ++ TL GH V +
Sbjct: 338 --------------------------------------DLENGELXY-TLQGHTALVGLL 358
Query: 753 KFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGS 812
+ D LVSA+ D +++ WD + + + H HTN+ V D + +GS
Sbjct: 359 RLSDK-FLVSAAADGSIRGWDANDYSRKF---SYH----HTNLSAITTFYVSDNILVSGS 410
Query: 813 ETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN 872
E N+ +Y+ S HA+ L DA Q I SV ++G+ TLVAA
Sbjct: 411 E-NQFNIYN------LRSGKLVHANILK-----DADQ-IWSVNFKGK---TLVAAVEKDG 454
Query: 873 IKILEMV 879
LE++
Sbjct: 455 QSFLEIL 461
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 705 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 764
+ C+QF + G+ D I YD N K L L GH+ V +K+ LVS S
Sbjct: 125 ITCLQFE---DNYVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 765 TDNTLKLWDL--SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETNEVFVY 820
TD T+++WD+ CT H F GH + + + + Y+ TGS N + V+
Sbjct: 181 TDRTVRVWDIKKGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 33/180 (18%)
Query: 639 EGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGT 698
+ +++V+D + L ++ H+ VW++ + A +L SGS D +V++W I +G
Sbjct: 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHV 198
Query: 699 IKT-KANVCCVQF-PLDSGRSLAFGSADHRIYYYDL-RNSKIP----------------- 738
+ + V C+ + + + GS D+ ++ + L + S +P
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258
Query: 739 ----LCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 794
+ L GH +V V +VS S DNTL +WD++ L+ +GHT+
Sbjct: 259 NPYFVGVLRGHMASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKC------LYILSGHTD 311
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 68/247 (27%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+ S +++ + VWDV++ + L + H R++S + + S S D ++++W
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIW---- 337
Query: 693 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYV 752
DL N ++ + TL GH V +
Sbjct: 338 --------------------------------------DLENGEL-MYTLQGHTALVGLL 358
Query: 753 KFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGS 812
+ D LVSA+ D +++ WD + + + H HTN+ V D + +GS
Sbjct: 359 RLSDK-FLVSAAADGSIRGWDANDYSRKF---SYH----HTNLSAITTFYVSDNILVSGS 410
Query: 813 ETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN 872
E N+ +Y+ S HA+ L DA Q I SV ++G+ TLVAA
Sbjct: 411 E-NQFNIYN------LRSGKLVHANILK-----DADQ-IWSVNFKGK---TLVAAVEKDG 454
Query: 873 IKILEMV 879
LE++
Sbjct: 455 QSFLEIL 461
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 11/183 (6%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI 699
V +W S +L +M + + S+ + + LA G+ V+LW + Q + +
Sbjct: 138 VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 196
Query: 700 KT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DA 757
+ A V + + + L+ GS I+++D+R ++ + TL GH++ V +++ D
Sbjct: 197 TSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 253
Query: 758 TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV-ATGSETNE 816
L S DN + +W + + PL +FT H V W V ATG T++
Sbjct: 254 RHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 311
Query: 817 VFV 819
+
Sbjct: 312 RHI 314
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 632 QIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWSIDFSSADPTLLASG--SDDGSV 685
+AS + +V VW + + L +H+ V ++ + +LA+G + D +
Sbjct: 255 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 314
Query: 686 KLWSINQGVSIGTIKTKANVCCVQFP-----LDSGRSLAFGSADHRIYYYDLRNSKIPLC 740
++W++ G + + + VC + + L SG F I+ Y + +
Sbjct: 315 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH--GFAQNQLVIWKYP---TMAKVA 369
Query: 741 TLIGH-NKTVSYVKFVDATTLVSASTDNTLKLW 772
L GH ++ +S D T+ SA+ D TL+LW
Sbjct: 370 ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 704
V R Q+ T +R H +++++ + + D LL S S DG + +W + I +++
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS 98
Query: 705 --VCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVSYVKFVDAT 758
+ C P SG +A G D+ Y+L+ N ++ L GH +S +F+D
Sbjct: 99 WVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDN 155
Query: 759 TLVSASTDNTLKLWDL 774
+V++S D T LWD+
Sbjct: 156 QIVTSSGDTTCALWDI 171
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQGVSIGTI---KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 747
+G+ T ++ N C FP +G + A GS D +DLR + L T N
Sbjct: 214 REGMCRQTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 748 T--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW 804
++ V F + L+ A D+ +WD ++ R GH N + +G++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLGVTDD 323
Query: 805 DGYVATGS 812
VATGS
Sbjct: 324 GMAVATGS 331
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 704
V R Q+ T +R H +++++ + + D LL S S DG + +W + I +++
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS 98
Query: 705 --VCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVSYVKFVDAT 758
+ C P SG +A G D+ Y+L+ N ++ L GH +S +F+D
Sbjct: 99 WVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDN 155
Query: 759 TLVSASTDNTLKLWDL 774
+V++S D T LWD+
Sbjct: 156 QIVTSSGDTTCALWDI 171
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQGVSIGTI---KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 747
+G+ T ++ N C FP +G + A GS D +DLR + L T N
Sbjct: 214 REGMCRQTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 748 T--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW 804
++ V F + L+ A D+ +WD ++ R GH N + +G++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLGVTDD 323
Query: 805 DGYVATGS 812
VATGS
Sbjct: 324 GMAVATGS 331
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 11/183 (6%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI 699
V +W S +L +M + + S+ + + LA G+ V+LW + Q + +
Sbjct: 127 VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 185
Query: 700 KT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DA 757
+ A V + + + L+ GS I+++D+R ++ + TL GH++ V +++ D
Sbjct: 186 TSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242
Query: 758 TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV-ATGSETNE 816
L S DN + +W + + PL +FT H V W V ATG T++
Sbjct: 243 RHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300
Query: 817 VFV 819
+
Sbjct: 301 RHI 303
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 632 QIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWSIDFSSADPTLLASG--SDDGSV 685
+AS + +V VW + + L +H+ V ++ + +LA+G + D +
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 686 KLWSINQGVSIGTIKTKANVCCVQFP-----LDSGRSLAFGSADHRIYYYDLRNSKIPLC 740
++W++ G + + + VC + + L SG F I+ Y + +
Sbjct: 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH--GFAQNQLVIWKYP---TMAKVA 358
Query: 741 TLIGH-NKTVSYVKFVDATTLVSASTDNTLKLW 772
L GH ++ +S D T+ SA+ D TL+LW
Sbjct: 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 676 LASGSDDGSVKLWSINQGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRN 734
LA G+ V+LW + Q + + + A V + + + L+ GS I+++D+R
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRV 138
Query: 735 SKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT 793
++ + TL GH++ V +++ D L S DN + +W + + PL +FT H
Sbjct: 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQ 196
Query: 794 NVKNFVGLSVWDGYV-ATGSETNE 816
V W V ATG T++
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSD 220
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 632 QIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWSIDFSSADPTLLASG--SDDGSV 685
+AS + +V VW + + L +H+ V ++ + +LA+G + D +
Sbjct: 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 686 KLWSINQGVSIGTIKTKANVCCVQFP-----LDSGRSLAFGSADHRIYYYDLRNSKIPLC 740
++W++ G + + + VC + + L SG F I+ Y + +
Sbjct: 224 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH--GFAQNQLVIWKYP---TMAKVA 278
Query: 741 TLIGH-NKTVSYVKFVDATTLVSASTDNTLKLW 772
L GH ++ +S D T+ SA+ D TL+LW
Sbjct: 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D+Y LG++ FE+ PFSTG E+ + LR + PP
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D+Y LG++ FE+ PFSTG E+ + LR + PP
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI------KTKANVCCVQFPLD 713
+ V S+D +++ SGS D ++K+W+I +G + T+ ++ V + D
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 714 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
++ D + ++L +I IGHN ++ + D T + SA D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 773 DLS 775
+L+
Sbjct: 224 NLA 226
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
++ T+ + V + F + + + S D + DLR G+
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE------FAGY 281
Query: 746 NK-----TVSYVKFVDATTLVSASTDNTLKLWDL 774
+K VS D TL + TDN +++W +
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 741 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 799 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 826
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 62/222 (27%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ-----GVSIGTIKTKANVC---- 706
+ H V S+ S+ P LL S S D ++ W + GV + + K +++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 707 -------------------------------------CVQFPLDSGRSLAF-GSADHRIY 728
+ +D S+ GS D I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 729 YYDLRNSKIPLCTLIGHNKTVSYVKFV-------DATTLVSASTDNTLKLWDLSMCTSRV 781
+ ++ L TL+GHN VS V+ V D+ T++SA D +K W+L+
Sbjct: 133 VWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 782 IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 823
F GH + N + S +A+ + E+ +++ A
Sbjct: 191 ------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI------KTKANVCCVQFPLD 713
+ V S+D +++ SGS D ++K+W+I +G + T+ ++ V + D
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 714 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
++ D + ++L +I IGHN ++ + D T + SA D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 773 DLS 775
+L+
Sbjct: 224 NLA 226
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
++ T+ + V + F + + + S D + DLR G+
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE------FAGY 281
Query: 746 NK-----TVSYVKFVDATTLVSASTDNTLKLW 772
+K VS D TL + TDN +++W
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 741 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 799 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 826
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 62/222 (27%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ-----GVSIGTIKTKANVC---- 706
+ H V S+ S+ P LL S S D ++ W + GV + + K +++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 707 -------------------------------------CVQFPLDSGRSLAF-GSADHRIY 728
+ +D S+ GS D I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 729 YYDLRNSKIPLCTLIGHNKTVSYVKFV-------DATTLVSASTDNTLKLWDLSMCTSRV 781
+ ++ L TL+GHN VS V+ V D+ T++SA D +K W+L+
Sbjct: 133 VWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 782 IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 823
F GH + N + S +A+ + E+ +++ A
Sbjct: 191 ------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 41 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI------KTKANVCCVQFPLD 713
+ V S+D +++ SGS D ++K+W+I +G + T+ ++ V + D
Sbjct: 101 KSDVMSVDIDK-KASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 158
Query: 714 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
++ D + ++L +I IGHN ++ + D T + SA D + LW
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 773 DLS 775
+L+
Sbjct: 218 NLA 220
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 221
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
++ T+ + V + F + + + S D + DLR G+
Sbjct: 222 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE------FAGY 275
Query: 746 NK-----TVSYVKFVDATTLVSASTDNTLKLWDL 774
+K VS D TL + TDN +++W +
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 741 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 64
Query: 799 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 826
L+ +WD VATG ET + FV HK+ M
Sbjct: 65 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 105
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 62/222 (27%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ-----GVSIGTIKTKANVC---- 706
+ H V S+ S+ P LL S S D ++ W + GV + + K +++
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 707 -------------------------------------CVQFPLDSGRSLAF-GSADHRIY 728
+ +D S+ GS D I
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 729 YYDLRNSKIPLCTLIGHNKTVSYVKFV-------DATTLVSASTDNTLKLWDLSMCTSRV 781
+ ++ L TL+GHN VS V+ V D+ T++SA D +K W+L+
Sbjct: 127 VWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 782 IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 823
F GH + N + S +A+ + E+ +++ A
Sbjct: 185 ------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI------KTKANVCCVQFPLD 713
+ V S+D +++ SGS D ++K+W+I +G + T+ ++ V + D
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 714 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
++ D + ++L +I IGHN ++ + D T + SA D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 773 DLS 775
+L+
Sbjct: 224 NLA 226
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
++ T+ + V + F + + + S D + DLR G+
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE------FAGY 281
Query: 746 NK-----TVSYVKFVDATTLVSASTDNTLKLWDL 774
+K VS D TL + TDN +++W +
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 741 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQD 70
Query: 799 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 826
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 62/222 (27%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ-----GVSIGTIKTKANVC---- 706
+ H V S+ S+ P LL S S D ++ W + GV + + K +++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 707 -------------------------------------CVQFPLDSGRSLAF-GSADHRIY 728
+ +D S+ GS D I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 729 YYDLRNSKIPLCTLIGHNKTVSYVKFV-------DATTLVSASTDNTLKLWDLSMCTSRV 781
+ ++ L TL+GHN VS V+ V D+ T++SA D +K W+L+
Sbjct: 133 VWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 782 IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 823
F GH + N + S +A+ + E+ +++ A
Sbjct: 191 ------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI------KTKANVCCVQFPLD 713
+ V S+D +++ SGS D ++K+W+I +G + T+ ++ V + D
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 714 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
++ D + ++L +I IGHN ++ + D T + SA D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 773 DLS 775
+L+
Sbjct: 224 NLA 226
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
++ T+ + V + F + + + S D + DLR + +
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR-PEFAGYSAAAE 286
Query: 746 NKTVSYVKFVDATTLVSASTDNTLKLWDL 774
VS D TL + TDN +++W +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 741 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 799 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 826
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 62/222 (27%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ-----GVSIGTIKTKANVC---- 706
+ H V S+ S+ P LL S S D ++ W + GV + + K +++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 707 -------------------------------------CVQFPLDSGRSLAF-GSADHRIY 728
+ +D S+ GS D I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 729 YYDLRNSKIPLCTLIGHNKTVSYVKFV-------DATTLVSASTDNTLKLWDLSMCTSRV 781
+ ++ L TL+GHN VS V+ V D+ T++SA D +K W+L+
Sbjct: 133 VWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 782 IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 823
F GH + N + S +A+ + E+ +++ A
Sbjct: 191 ------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTI------KTKANVCCVQFPLD 713
+ V S+D ++ SGS D ++K+W+I +G + T+ ++ V + D
Sbjct: 107 KSDVXSVDIDKKASXII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 714 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 772
++ D + ++L +I IGHN ++ + D T + SA D + LW
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 773 DLS 775
+L+
Sbjct: 224 NLA 226
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 19/157 (12%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S+ + V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIXLWNLAA 227
Query: 693 GVSIGTIKTKANVCCVQFPLD-------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 745
+ T+ + V + F + + + S D + DLR G+
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE------FAGY 281
Query: 746 NK-----TVSYVKFVDATTLVSASTDNTLKLWDLSMC 777
+K VS D TL + TDN +++W +
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 741 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 798
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 799 VGLS----------------VWDGYVATGSETNEVFVYHKA 823
L+ +WD VATG ET + FV HK+
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKS 108
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ-----GVSIGTIKTKANVC--CV 708
+ H V S+ S+ P LL S S D ++ W + GV + + K +++ C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 709 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF-VDATTLVSASTDN 767
D +L+ S D + +D+ + +GH V V A+ ++S S D
Sbjct: 73 -LTADGAYALS-ASWDKTLRLWDVATGE-TYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 768 TLKLWDL 774
T+K+W +
Sbjct: 130 TIKVWTI 136
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D Y LG++ FE PFSTG E+ + LR + PP
Sbjct: 193 TAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXIYPFSTGXERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKXKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 83 ECLHIFRQIVEIVYAAHSQGIVVHNVRP-SCFVMSSFN 119
E +FRQI+E + HSQGI+ N++P + F+ S N
Sbjct: 117 EYWRLFRQILEALSYIHSQGIIHRNLKPXNIFIDESRN 154
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y SPE+++ D+Y LG++L EL T E ++ + LR ++ + K
Sbjct: 201 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISD---IFDKK 257
Query: 298 EASFCLWLLHPEPSGRPKMGELLQS 322
E + LL +P RP E+L++
Sbjct: 258 EKTLLQKLLSKKPEDRPNTSEILRT 282
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 81 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 139
Query: 114 VM 115
++
Sbjct: 140 LI 141
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y SPE+++ D+Y LG++L EL T E ++ + LR ++ + K
Sbjct: 187 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISD---IFDKK 243
Query: 298 EASFCLWLLHPEPSGRPKMGELLQS 322
E + LL +P RP E+L++
Sbjct: 244 EKTLLQKLLSKKPEDRPNTSEILRT 268
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 100 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 158
Query: 114 VM 115
++
Sbjct: 159 LI 160
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 84 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 142
Query: 114 VM 115
++
Sbjct: 143 LI 144
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 676 LASGSDDGSVKLWSINQ---GVSIGTIKTKANVCCVQFPLDSGRS-LAFGSADHRIYYYD 731
+AS S DG+V+LWS + G + T + N C DS + L FG D I
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC----YDSEKELLLFGGKDTXINGVP 87
Query: 732 L--RNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLW 772
L + + PL TLIGH V + F D ++S S D T K+W
Sbjct: 88 LFATSGEDPLYTLIGHQGNVCSLSFQDG-VVISGSWDKTAKVW 129
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 7/152 (4%)
Query: 622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD 681
++C S+ + S +++ +VW ++ ++ H VW S + S
Sbjct: 106 NVCSLSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163
Query: 682 DGSVKLWSINQGVSIGTIKTKANVCCVQFPL-DSGRSLAFGSADHRIYYYDLRNSKIPLC 740
D ++KLW ++ I T N + D G ++ S D I D + L
Sbjct: 164 DKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISC-SNDGLIKLVDXHTGDV-LR 219
Query: 741 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLW 772
T GH V +K + +VS D T+++W
Sbjct: 220 TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIW 251
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 100 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 158
Query: 114 VM 115
++
Sbjct: 159 LI 160
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 80 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 138
Query: 114 VM 115
++
Sbjct: 139 LI 140
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 710 FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVD-ATTLVSASTDNT 768
FP SG +L S D ++ + +++ P TLIGH TV+ + +D ++SAS D T
Sbjct: 145 FP--SGEALISSSQDMQLKIWSVKDGSNPR-TLIGHRATVTDIAIIDRGRNVLSASLDGT 201
Query: 769 LKLWDLSMCTSRVIDTPLHSF 789
++LW+ T+ +H+F
Sbjct: 202 IRLWECGTGTT------IHTF 216
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 611 VVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSS 670
+ E + ++S+ W S+ S ++ G+V ++DV L M H+ RV + ++
Sbjct: 128 LAETDESTYVASVKW-SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR 186
Query: 671 ADPTLLASGSDDGSVKLWSIN-QGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYY 729
+L+SGS G++ + IGT++ ++ C G LA G D+ +
Sbjct: 187 H---VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
Query: 730 YDLRNSKIPLCTLIGHNKTVSYVKF 754
+D R+S IP T HN V V +
Sbjct: 244 WDARSS-IPKFTKTNHNAAVKAVAW 267
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD--DGSVKLWS 689
Q+AS + VVQ+WD S H V ++ + LLA+G D + W+
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
Query: 690 INQGVSIGTIKTKANVCCVQFPLDSGRSLA-FGSADHRIYYYDLRNSKIPLCTLI-GHNK 747
G + T+ + V + + S ++ G D+ + + +S + I H+
Sbjct: 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT 350
Query: 748 TVSYVKFV-DATTLVSASTDNTLKLW 772
V Y D L +A++D LK W
Sbjct: 351 RVLYSALSPDGRILSTAASDENLKFW 376
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 638 FEGVVQVWDVSRSQV--LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
E V VW+ V L E E V S+ +S D + L+ G +G V ++ +
Sbjct: 111 LERNVYVWNADSGSVSALAETDE-STYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTK 168
Query: 696 IGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 754
+ T+ +A V C+ + + L+ GS I+++D+R + + TL GH+ V + +
Sbjct: 169 LRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225
Query: 755 -VDATTLVSASTDNTLKLWD 773
D L S DN +++WD
Sbjct: 226 RSDGLQLASGGNDNVVQIWD 245
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 710 FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVD-ATTLVSASTDNT 768
FP SG +L S D ++ + +++ P TLIGH TV+ + +D ++SAS D T
Sbjct: 148 FP--SGEALISSSQDMQLKIWSVKDGSNPR-TLIGHRATVTDIAIIDRGRNVLSASLDGT 204
Query: 769 LKLWDLSMCTSRVIDTPLHSF 789
++LW+ T+ +H+F
Sbjct: 205 IRLWECGTGTT------IHTF 219
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS---SNF 638
+FA+AG + +++ A E + Y + +LS + W+ +++A+ S+
Sbjct: 180 VFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238
Query: 639 EGVVQVWDV--SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSI 696
+ + +WD+ + + + T + H++ + S+D+ D LL S D +V LW+ +
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Query: 697 GTIKTKANVCC-VQFPLDSGRSLAFGSADHRIYYYDLRN 734
+ N C +F ++ A S D++I L+N
Sbjct: 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 44/204 (21%)
Query: 578 RDGELFAAAGVNKKIKVFECDAIINE--NRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
+ + A+ G N +I +++ + N P M+S ++ S+ WN + AS
Sbjct: 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS 183
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS 695
+ +WD+ + + I S P N G+
Sbjct: 184 AGSSNFASIWDLKAKKEV------------IHLSYTSP-----------------NSGI- 213
Query: 696 IGTIKTKANVCCVQF-PLDSGR-SLAFGS-ADHRIYYYDLRNSKIPLCTL-IGHNKTVSY 751
K + V++ P +S R + A GS D I +DLRN+ PL TL GH K +
Sbjct: 214 ------KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 752 VKFV--DATTLVSASTDNTLKLWD 773
+ + D L+S+ DNT+ LW+
Sbjct: 268 LDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+A+ +G++ +WDV + + ++ ++ HE +W + F ++P L + S+DGS+ W +
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Query: 692 QGV 694
V
Sbjct: 312 TDV 314
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKS-QIASSNFEGVVQVWDV 647
N +I D IN R H V + S++ +++++ +I + N G +++WD
Sbjct: 160 NPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDF 219
Query: 648 SR-----SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKT 701
+ SQ+L+ + + +D ++A+G DG + +W + QG + + +K
Sbjct: 220 RQQGNEPSQILS-LTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKA 278
Query: 702 -KANVCCVQFPLDSGRSLAFGSADHRIYYYD 731
+A + V F + L S D ++++D
Sbjct: 279 HEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 683 GSVKLWSINQGVS-----IGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI 737
G +K+W Q + + + + CV + +A G D + +D+R +
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 738 PLCTLIGHNKTVSYVKF--VDATTLVSASTDNTLKLWDLS 775
P+ L H + V F + L + S D +L WD S
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 227 MKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRV 286
+K+ + T ++ +PE + + +DI+ LG+ EL + GE M +R
Sbjct: 175 IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIEL----AKGEPPNSDMHPMRVLF 230
Query: 287 L-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSEFL 325
L PP L+ F K F L+ +PS RP ELL+ +F+
Sbjct: 231 LIPKNNPPTLVGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFI 275
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 754 FVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW-DGYVATGS 812
F D T VS D ++K+WDLS L S+ H++ N V D +
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQ------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 813 ETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN 872
E + ++ P PA +F +D + +SV W + +T + +GN
Sbjct: 202 EDGRILLWDTRKPKPATRIDFCASDTIP-----------TSVTWHPEKDDTFACGDETGN 250
Query: 873 IKILEM 878
+ ++ +
Sbjct: 251 VSLVNI 256
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
+Q S + V+VWD+S+ VL H V + T+ S +DG + LW
Sbjct: 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMR----EHERRVWSIDFS 669
+ + + ++ + W S +AS + G V++W++ + L + EH+ V ++
Sbjct: 91 VQTEAGVTDVAWVSEKGILVASDS--GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF 148
Query: 670 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANV--CCVQFPLDSGRSLAFGSA--DH 725
S D T SG D SVK+W ++Q + + ++ C P G+ F S D
Sbjct: 149 S-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP---GKDTIFLSCGEDG 204
Query: 726 RIYYYDLRNSK 736
RI +D R K
Sbjct: 205 RILLWDTRKPK 215
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
+ DG A +K + ++E D E I V++ S+ + + W+ ++ +AS
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECI--SVLQEHSQD-VKHVIWHPS-EALLAS 170
Query: 636 SNFEGVVQVWDVSRS--QVLTEMREHERRVWSIDFSSADPTL-LASGSDDGSVKLW 688
S+++ V++W + + + HE VWS DF + L SGSDD +V++W
Sbjct: 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 46/172 (26%)
Query: 652 VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFP 711
++ ++ ++ ++WS DFS +LA+GS D +KL S+ F
Sbjct: 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYD---------------DFT 47
Query: 712 LDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSA-STDNTLK 770
L I + H K + V + T+L++A S D+T+
Sbjct: 48 L------------------------IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83
Query: 771 LWDLSMCTSRVIDTPLHSFT-GHTNVKNFVGLSVWDG-YVATGSETNEVFVY 820
+W R + L + GH N V S DG Y+AT S V+++
Sbjct: 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIW 134
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)
Query: 626 NSYIKSQIASSNFEGVVQVWDVS-RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGS 684
NS + S + + V++WD+ S+ + HE + S+ F D +GSDDG+
Sbjct: 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGT 272
Query: 685 VKLWSINQGVSIGTIKTKAN--------VCCVQFPLDSGRSLAFGSADHRIYYYD--LRN 734
+L+ + G + + + V V F + SGR L G ++ Y +D L
Sbjct: 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAE 331
Query: 735 SKIPLCTLI-GHNKTVSYVKF-VDATTLVSASTDNTLKLWDLS 775
+ L TL H +S + D + L + S D LK+W S
Sbjct: 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 25/187 (13%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
K+ I S++ +G + VW+ SQ ++ H V F+ ++ A G D + +++
Sbjct: 78 KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV-ACGGLDSACSIFN 136
Query: 690 I--------NQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR-------- 733
+ N VS K Q+ D L GS D +D+
Sbjct: 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196
Query: 734 NSKIPLCTLIGHNKTVSYVKF--VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTG 791
S+ P GH V + ++A +S S D T++LWDL + TSR + T H G
Sbjct: 197 GSEFP----SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI-TSRAVRT-YHGHEG 250
Query: 792 HTNVKNF 798
N F
Sbjct: 251 DINSVKF 257
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 176 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 234
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 235 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 273
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 685 VKLWSINQG----VSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYYDLR-NSKIP 738
V +W G +++ + + A+V VQ+ P + G L S+D ++ + + N
Sbjct: 79 VLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137
Query: 739 LCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLWDL-SMCTSRVID 783
+ H V+ + AT V+ DN +K+W S + V++
Sbjct: 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197
Query: 784 TPLHSFTGHTN 794
+ L GH++
Sbjct: 198 STLE---GHSD 205
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 180 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 238
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 239 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 277
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 187 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 245
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 246 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 284
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 185 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 243
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 244 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 282
>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
In Yeast
pdb|2JD5|A Chain A, Sky1p Bound To Npl3p-Derived Substrate Peptide
pdb|2JD5|B Chain B, Sky1p Bound To Npl3p-Derived Substrate Peptide
Length = 373
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC 267
++T Y SPE L GAP C +DI+ L+FEL
Sbjct: 196 IQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230
>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Y|B Chain B, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Z|A Chain A, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q8Z|B Chain B, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q97|A Chain A, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q97|B Chain B, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q99|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
pdb|1Q99|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
Length = 373
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC 267
++T Y SPE L GAP C +DI+ L+FEL
Sbjct: 196 IQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 685 VKLWSINQG----VSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYYDLR-NSKIP 738
V +W G +++ + + A+V VQ+ P + G L S+D ++ + + N
Sbjct: 79 VMIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137
Query: 739 LCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLW 772
+ H V+ + AT V+ DN +K+W
Sbjct: 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 230 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 288
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 289 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 327
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS 253
T +LVE KI D + + + + K+ F +K+ WYA PE L + S AS
Sbjct: 141 ATRNILVENENRVKIGDFGL-TKVLPQDKEFFKVKEPGESPIFWYA-PESLTESKFSVAS 198
Query: 254 DIYRLGVLLFELF 266
D++ GV+L+ELF
Sbjct: 199 DVWSFGVVLYELF 211
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80
Query: 685 VKLWSINQG----VSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYYDLR-NSKIP 738
V +W G +++ + + A+V VQ+ P + G L S+D ++ + + N
Sbjct: 81 VLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 139
Query: 739 LCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLWDL-SMCTSRVID 783
+ H V+ + AT V+ DN +K+W S + V++
Sbjct: 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 199
Query: 784 TPLHSFTGHTN 794
+ L GH++
Sbjct: 200 STLE---GHSD 207
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 186 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 245
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 246 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 281
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 365
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 366 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 404
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 651 QVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGSVKLWSINQG----VSIGTIKTKANV 705
+++ + HE VW +D++ T+LAS S DG V +W G +++ + + A+V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHS-ASV 102
Query: 706 CCVQF-PLDSGRSLAFGSADHRIYYYDLR-NSKIPLCTLIGHNKTVSYVKFVDATT---- 759
VQ+ P + G L S+D ++ + + N + H V+ + AT
Sbjct: 103 NSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 760 ----------LVSASTDNTLKLWDL-SMCTSRVIDTPLHSFTGHTN 794
V+ DN +K+W S + V+++ L GH++
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSD 205
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 196 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 255
Query: 289 P 289
P
Sbjct: 256 P 256
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ L K
Sbjct: 186 YIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSK 245
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ S C L+ P+ R
Sbjct: 246 --EAVSICKGLMTKHPAKR 262
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 703 ANVCCVQFPLDSGRSLAFGSADHRIYYYDL-RNSKIPLCTLIGHN-KTVSYVKFVDATTL 760
A V CV + D+ R LA GS D+ + +++ + S P+ H +V+ V +++ TT+
Sbjct: 537 AKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI 595
Query: 761 VSASTDNTLKLWDL 774
VSA D+ +K W++
Sbjct: 596 VSAGQDSNIKFWNV 609
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 15/175 (8%)
Query: 704 NVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSA 763
N CV D + +A G D +++ Y L + + I H ++ V F + + A
Sbjct: 450 NSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508
Query: 764 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 823
TD + K+ S+ + + +S+T HT V S + +ATGS N V V++
Sbjct: 509 -TDQSRKVIPYSVANNFEL-AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Query: 824 FPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 878
P +H + G A ++SV W ++ T+V+A NIK +
Sbjct: 567 KPS-------DHPIIIKGAH---AMSSVNSVIWLNET--TIVSAGQDSNIKFWNV 609
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 685 VKLWSINQG----VSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYYDLR-NSKIP 738
V +W G +++ + + A+V VQ+ P + G L S+D ++ + + N
Sbjct: 79 VLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137
Query: 739 LCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLW 772
+ H V+ + AT V+ DN +K+W
Sbjct: 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA 703
VW + L + H +WSID +GS D S+KLW ++ G + T K+
Sbjct: 58 VWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWKSPV 116
Query: 704 NVCCVQF 710
V V+F
Sbjct: 117 PVKRVEF 123
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELF 211
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELF 229
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 182 WYA-PESLTESKFSVASDVWSFGVVLYELF 210
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 190 WYA-PESLTESKFSVASDVWSFGVVLYELF 218
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 181 WYA-PESLTESKFSVASDVWSFGVVLYELF 209
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS 253
T +LVE KI D + + + + K+ + +K+ WYA PE L + S AS
Sbjct: 142 ATRNILVENENRVKIGDFGL-TKVLPQDKEYYKVKEPGESPIFWYA-PESLTESKFSVAS 199
Query: 254 DIYRLGVLLFELF 266
D++ GV+L+ELF
Sbjct: 200 DVWSFGVVLYELF 212
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 187 WYA-PESLTESKFSVASDVWSFGVVLYELF 215
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELF 229
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 214 WYA-PESLTESKFSVASDVWSFGVVLYELF 242
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELF 211
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 189 WYA-PESLTESKFSVASDVWSFGVVLYELF 217
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 632 QIASSNFEGVVQVWDV-SRSQVLTEMR----EHERRVWSIDFSSA---DPTLLASGSDDG 683
+I + + +G V+VWD + + M E++R W++ F +A + ++ +G D+G
Sbjct: 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190
Query: 684 SVKLWSINQGVSIGTIKTKANVCCVQFPLD--SGRSLAFGSADHRIYYYDLR 733
+KL+ + K VC ++F S L S + + + +D+R
Sbjct: 191 DIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 683 GSVKLWSINQG--VSIGTIKTKANVCCVQFPLDS--GRSLAFGSADHRIYYYDLRNSKIP 738
G ++L+ I G + I+ + C F S R LA G ++ ++L ++P
Sbjct: 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP 103
Query: 739 LCTLIGHNKTVS-------YVKFVDATTLVSASTDNTLKLWD 773
+ ++ GH + ++ A +V+ S D T+K+WD
Sbjct: 104 VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 188 WYA-PESLTESKFSVASDVWSFGVVLYELF 216
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF---CPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ + K
Sbjct: 187 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSK 246
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ + C L+ P R
Sbjct: 247 --EAVAICKGLMTKHPGKR 263
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 219 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 279 AHILDQAPKARKF 291
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 200 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 259
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 260 AHILDQAPKARKF 272
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 219 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 279 AHILDQAPKARKF 291
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 171 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 230
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 231 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 270
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 195 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 254
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 255 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 294
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
I W + + IAS + + V VW++ ++ +RE H +RV + + +
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 676 LASGSDDGSVKLWSINQGVSIGTI 699
L S D + +W + G ++ T+
Sbjct: 147 LLSAGXDNVILVWDVGTGAAVLTL 170
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 718 LAFGSADHRIYYYDLRNSKI------PLCTLIGHNKTVSYVKF--VDATTLVSASTDNTL 769
+A GS D + +++ + + P+ TL GH K V V + L+SA DN +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 770 KLWDLS 775
+WD+
Sbjct: 157 LVWDVG 162
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 596 ECDAIINENRD------IHYPVVEMASRSK-LSSICWNSYIKSQIASSNFEGVVQVWDVS 648
+C ++ E D + PV+ + +K + + W+ ++ + S+ + V+ VWDV
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Query: 649 RSQVLTEMRE--HERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIG 697
+ + H ++S+D+S D L+ + D V++ +G +
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVA 212
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 197 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 256
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 257 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 296
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF---CPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ + K
Sbjct: 508 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSK 567
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ + C L+ P R
Sbjct: 568 --EAVAICKGLMTKHPGKR 584
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 177 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 236
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 237 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 272
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 177 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 236
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 237 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 272
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 181 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 240
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 241 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 276
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL----PPQ 290
T +Y SPE P + SDI+ LG +L+EL C E +M +L +++ PP
Sbjct: 188 TPYYLSPEICENKPYNNKSDIWALGCVLYEL-CTLKHAFE-AGSMKNLVLKIISGSFPPV 245
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
L S L P RP + +L+ F+
Sbjct: 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFI 280
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 21/197 (10%)
Query: 639 EGVVQVWDVSR-------SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+G V+VWD+S SQ+ R++ R + D L G + ++ +W +
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL---LPDGCTLIVGGEASTLSIWDLA 127
Query: 692 QGVS-IGTIKTKANVCCVQFPLDSGRSLAFGS-ADHRIYYYDLRNSKIPLCTLIGHNKTV 749
I T + C + + F +D I +DL N + + GH
Sbjct: 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGA 186
Query: 750 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 808
S + D T L + DNT++ WDL R + H FT + W +
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLR--EGRQLQQ--HDFTSQIFSLGYCPTGEW---L 239
Query: 809 ATGSETNEVFVYHKAFP 825
A G E++ V V H P
Sbjct: 240 AVGMESSNVEVLHVNKP 256
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 18/190 (9%)
Query: 639 EGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGT 698
+G + VWD+ ++ + + H ID S+ D T L +G D +V+ W + +G +
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 699 IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDAT 758
+ + + + +G LA G + L +K L H V +KF
Sbjct: 221 HDFTSQIFSLGY-CPTGEWLAVGMESSNVEV--LHVNKPDKYQLHLHESCVLSLKFAYCG 277
Query: 759 T-LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFV---GLSVWDGYVATGSET 814
VS DN L W TP + + + V +SV D Y+ TGS
Sbjct: 278 KWFVSTGKDNLLNAWR----------TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327
Query: 815 NEVFVYHKAF 824
+ VY +
Sbjct: 328 KKATVYEVIY 337
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
I W + + IAS + + V VW++ ++ +RE H +RV + + +
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 676 LASGSDDGSVKLWSINQGVSIGTI 699
L S D + +W + G ++ T+
Sbjct: 147 LLSAGCDNVILVWDVGTGAAVLTL 170
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 718 LAFGSADHRIYYYDLRNSKI------PLCTLIGHNKTVSYVKF--VDATTLVSASTDNTL 769
+A GS D + +++ + + P+ TL GH K V V + L+SA DN +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 770 KLWDLS 775
+WD+
Sbjct: 157 LVWDVG 162
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 610 PVVEMASRSK-LSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE--HERRVWSI 666
PV+ + +K + + W+ ++ + S+ + V+ VWDV + + H ++S+
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 667 DFSSADPTLLASGSDDGSVKLWSINQGVSIG 697
D+S D L+ + D V++ +G +
Sbjct: 183 DWSR-DGALICTSCRDKRVRVIEPRKGTVVA 212
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 44/189 (23%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGV 694
SS+++ +++WD+ H+ V+S+ FS + +L++G++ +KLW+I
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER-EIKLWNI---- 147
Query: 695 SIGTIKTKANVCCVQFPLDSGRSLAFGSAD---HRIYYYDLRNSKIPLCTLIGHNKTVSY 751
+G K F SA+ H + +R S I + NK +
Sbjct: 148 -LGECK-------------------FSSAEKENHSDWVSCVRYSPI----MKSANKVQPF 183
Query: 752 VKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATG 811
+ S D LK+W+ + ++F H + N + +S Y+ATG
Sbjct: 184 APY-----FASVGWDGRLKVWNTNFQIR-------YTFKAHESNVNHLSISPNGKYIATG 231
Query: 812 SETNEVFVY 820
+ ++ ++
Sbjct: 232 GKDKKLLIW 240
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 718 LAFGSADHRIYYYDLRNSK------IPLCTLIGHNKTVSYVKFVDATTL-VSASTDNTLK 770
L GS D + + L + IP L GHN VS + +S+S D TL+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 771 LWDLSMCTSRVIDTPLHSFTGH 792
LWDL T+ F GH
Sbjct: 102 LWDLRTGTT------YKRFVGH 117
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y +PE L G+ A+D++ LG+ + E+ C LR LPP+
Sbjct: 222 YMAPELLQGS-YGTAADVFSLGLTILEVACNMEL-PHGGEGWQQLRQGYLPPEFTAGLSS 279
Query: 298 EA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
E S + +L P+P R LL L +P
Sbjct: 280 ELRSVLVMMLEPDPKLRATAEALLALPVLRQP 311
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFE---LFCPFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+E L PF+ +K
Sbjct: 165 ILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFE---LFCPFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+E L PF+ +K
Sbjct: 165 ILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFE---LFCPFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+E L PF+ +K
Sbjct: 165 ILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHR 285
K+ L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R
Sbjct: 197 KRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDS 256
Query: 286 VLPPQL--LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLN 326
LPP++ L K F +L EPS R ELL FL
Sbjct: 257 -LPPRVKDLHKVSSVLRGFLDLMLVREPSQRATAQELLGHPFLK 299
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 331
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 22/151 (14%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 155 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 207
Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRV--LPPQL-----LLKFPKEASFCLWLLH 307
+G+ L E+ P +G L + V PP+L L+F + CL
Sbjct: 208 MGLSLVEMAVGRYPIGSGSGSMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLI--- 264
Query: 308 PEPSGRPKMGELLQSEFLNEPRDSMEEREAA 338
P+ R + +L+ F+ R EE + A
Sbjct: 265 KNPAERADLKQLMVHAFIK--RSDAEEVDFA 293
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+Q S + + ++VWD+++ VL+ R H +V + S ++ S S+D + LW
Sbjct: 140 TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Query: 691 ---NQGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 747
IG + + FG + + D +++ L + + H++
Sbjct: 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQ 258
Query: 748 TVSYVKFVDATT--LVSASTDNTLKLWDLSM 776
V+ + F + L S S D +L + D S+
Sbjct: 259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 679 GSDDGSVKLWSINQGVSIGTIK----TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRN 734
SD G+V+LW +++ ++ K ++ L SG GS D I +DL
Sbjct: 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 735 SKIPLCTLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWD 773
++ L + H V+ V + +S S DN + LWD
Sbjct: 159 -QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS 270
++ T Y SPE+ G +DIY +G++L+E+ PF+
Sbjct: 172 VLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN 213
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRT 278
Y +PE LA P S A D + +GV+ + L C + E+T +
Sbjct: 173 YVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES 213
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 109 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 161
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 162 DFGVAGQLTDTQ-----IKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 212
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 213 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 272
Query: 324 FL 325
F+
Sbjct: 273 FI 274
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFST-GEEKTRTMSSLR------------H 284
Y PE ++ SD+Y GV+LFE+ C S + R M +L
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266
Query: 285 RVLPPQL--------LLKFPKEASFCLWLLHPEPSGRPKMGELL 320
+++ P L L KF A CL L RP MG++L
Sbjct: 267 QIVDPNLADKIRPESLRKFGDTAVKCLAL---SSEDRPSMGDVL 307
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 94 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 146
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 147 DFGVAGQLTDTQ-----IKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 197
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 198 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 257
Query: 324 FL 325
F+
Sbjct: 258 FI 259
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 114 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 166
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 167 DFGVAGQLTDTQ-----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 217
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 218 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 277
Query: 324 FL 325
F+
Sbjct: 278 FI 279
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFST-GEEKTRTMSSLR------------H 284
Y PE ++ SD+Y GV+LFE+ C S + R M +L
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266
Query: 285 RVLPPQL--------LLKFPKEASFCLWLLHPEPSGRPKMGELL 320
+++ P L L KF A CL L RP MG++L
Sbjct: 267 QIVDPNLADKIRPESLRKFGDTAVKCLAL---SSEDRPSMGDVL 307
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 94 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 146
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 147 DFGVAGQLTDTQ-----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 197
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 198 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 257
Query: 324 FL 325
F+
Sbjct: 258 FI 259
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 186 IVGTTAYXAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 233
Query: 292 LL 293
LL
Sbjct: 234 LL 235
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 195 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 242
Query: 292 LL 293
LL
Sbjct: 243 LL 244
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 195 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 242
Query: 292 LL 293
LL
Sbjct: 243 LL 244
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++E F + T Y SPE L G S SDI+
Sbjct: 139 ILVNSRGEIKLCDFGVSGQLIDEMANEF-------VGTRSYMSPERLQGTHYSVQSDIWS 191
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 192 MGLSLVEM 199
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 29/107 (27%)
Query: 30 VELTHGDHLRNQGGL-----SGVCE--------------NEAAIDPFVHAIEWGDVSLRQ 70
+EL HG HL ++ + +G C NE AI+ +H R+
Sbjct: 107 MELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHG-------FRE 159
Query: 71 WLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
LD +R + +I RQI ++ H+QGI +++P F+ S+
Sbjct: 160 SLDFVQREKLIS---NIMRQIFSALHYLHNQGICHRDIKPENFLFST 203
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 189 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 236
Query: 292 LL 293
LL
Sbjct: 237 LL 238
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPFS--TGEEKTRTMSSLRHRVLPPQL 291
+++PE S SD++ G+L++E+F P+ T E +S HR+ P L
Sbjct: 171 WSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQ-GHRLYRPHL 229
Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQS 322
+ + W H P RP +LL S
Sbjct: 230 ASDTIYQIMYSCW--HELPEKRPTFQQLLSS 258
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 185 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 219
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639
G L A +K + V+E ++E + V + + + W+ + +AS++++
Sbjct: 117 GNLLATCSRDKSVWVWE----VDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYD 171
Query: 640 GVVQVWDVSRSQ--VLTEMREHERRVWSIDFSSADPT--LLASGSDDGSVKLW 688
V+++ + HE VWS+ F DP+ LAS SDD +V++W
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAF---DPSGQRLASCSDDRTVRIW 221
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 236 NWYASPEELAGAPVSCASDIYRLGVLLFELF----CPFSTGEEKTRTMSSLRH--RVLPP 289
W A PE + S SD++ GVLL+E+F P+ + S LR R+ P
Sbjct: 266 KWMA-PESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAP 324
Query: 290 QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ P+ L H +P RP+ EL++
Sbjct: 325 E--YSTPEIYQIMLDCWHRDPKERPRFAELVE 354
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PF-STGEEKTRTMSSLRHRVLPPQLLL 293
+ +PE G+ S D++ G++L+E+ PF G R M ++ + PP L+
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP-LIK 227
Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
PK S +PS RP M E+++
Sbjct: 228 NLPKPIESLMTRCWSKDPSQRPSMEEIVK 256
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PF-STGEEKTRTMSSLRHRVLPPQLLL 293
+ +PE G+ S D++ G++L+E+ PF G R M ++ + PP L+
Sbjct: 170 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP-LIK 228
Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
PK S +PS RP M E+++
Sbjct: 229 NLPKPIESLMTRCWSKDPSQRPSMEEIVK 257
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLME-- 234
P+N L A C + +G L + + N + + + E + F Q +L +
Sbjct: 137 PSNILLNAECHVKVADFG----LSRSFVNIRRVTNNIPL-SINENTENFDDDQPILTDYV 191
Query: 235 -TNWYASPEELAGA-PVSCASDIYRLGVLLFELFC 267
T WY +PE L G+ + D++ LG +L E+ C
Sbjct: 192 ATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILC 226
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFEL---FCPFSTGEEKT 276
+ +PE L A DI+ LGVLL+ + + PF+ G + T
Sbjct: 186 FVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT 227
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 713 DSGRSLAFGSADHRIYYYDLR-NSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKL 771
D G + S D +DL N I + KT+ ++K + + +++ S D TLK
Sbjct: 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 772 WD 773
WD
Sbjct: 156 WD 157
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT--EMREHERRVWSIDFSSADPT 674
R+ + S+ WN + I S + E V +W+V V+ E++E + + S D +
Sbjct: 149 RAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 675 L---LASGSDD--------GSVKLWSINQGVSIGT-IKTKANVCCVQFPLDSGRSLAFGS 722
L + DD G++ ++ I + G I + ++F D+ + L S
Sbjct: 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLLSAS 266
Query: 723 ADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 778
D + + N C GH++++ +V ++S S D +++LW L T
Sbjct: 267 DDGTLRIWHGGNGNSQNC-FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT 321
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 87 IFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIE 125
+FRQIV V HSQG +++P + ++ + I+
Sbjct: 113 VFRQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLID 151
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 718 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSM 776
+A GS D I+ Y ++ + L H V+ + + +TLVS+ D +K W++ +
Sbjct: 556 VATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 183 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 211
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 70 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 126
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+ G++++ + Q + H + + F DP LL S S D +++LW+I
Sbjct: 127 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 196 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 224
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNV-RPSCFVMSSFNHVSFIEXXXXXXXXXXXHEEGLN 142
L R+I + + H I + N+ RP F +FN V I+ + L+
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFNEVYIIQELMQTDLHRVISTQMLS 110
Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
+++ + + +L + R DL+ P+N L ++C +G ++ E
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHR-DLK----PSNLLINSNCDLKVCDFGLARIIDES 165
Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE-ELAGAPVSCASDIYRLGVL 261
+ N E ++ + + T WY +PE L A S A D++ G +
Sbjct: 166 AAD--------NSEPTGQQS-----GMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212
Query: 262 LFELF 266
L ELF
Sbjct: 213 LAELF 217
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 718 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSM 776
+A GS D I+ Y ++ + L H V+ + + +TLVS+ D +K W++ +
Sbjct: 556 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 184 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 212
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 180 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 208
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 198 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 250
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 251 MGLSLVEM 258
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 163 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 215
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 216 MGLSLVEM 223
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+A + G++++ + Q + H + + F DP LL S S D +++LW+I
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+A + G++++ + Q + H + + F DP LL S S D +++LW+I
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 29 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 85
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+ G++++ + Q + H + + F DP LL S S D +++LW+I
Sbjct: 86 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 33 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+ G++++ + Q + H + + F DP LL S S D +++LW+I
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 132 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 163
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEE 274
T Y SPE L S +SD++ LG ++++L PF G E
Sbjct: 197 TAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFRAGNE 239
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y +PE L G S SDI+
Sbjct: 146 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMAPERLQGTHYSVQSDIWS 198
Query: 258 LGVLLFEL 265
+G+ L EL
Sbjct: 199 MGLSLVEL 206
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H RQI+E + H I+ +V+P C +++S
Sbjct: 134 HYMRQILEALRYCHDNNIIHRDVKPHCVLLAS 165
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H RQI+E + H I+ +V+P C +++S
Sbjct: 136 HYMRQILEALRYCHDNNIIHRDVKPHCVLLAS 167
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 109 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 140
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 108 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 139
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSL--RHRVLPPQLLLKF 295
+ +PE + + S SD++ GVLL+EL TGE R + L + V +L L
Sbjct: 180 WMAPEVIRASMFSKGSDVWSYGVLLWELL----TGEVPFRGIDGLAVAYGVAMNKLALPI 235
Query: 296 PKE-----ASFCLWLLHPEPSGRPKMGELL 320
P A +P+P RP +L
Sbjct: 236 PSTCPEPFAKLMEDCWNPDPHSRPSFTNIL 265
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 109 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 140
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 212 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFXRRLKE-GTRMRAPD 270
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 271 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 299
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNV-RPSCFVMSSFNHVSFIEXXXXXXXXXXXHEEGLN 142
L R+I + + H I + N+ RP F +FN V I+ + L+
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFNEVYIIQELMQTDLHRVISTQMLS 110
Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
+++ + + +L + R DL+ P+N L ++C +G ++ E
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHR-DLK----PSNLLINSNCDLKVCDFGLARIIDES 165
Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE-ELAGAPVSCASDIYRLGVL 261
++ E Q M + + T WY +PE L A S A D++ G +
Sbjct: 166 AADNS-----------EPTGQQSGMTE--YVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212
Query: 262 LFELF 266
L ELF
Sbjct: 213 LAELF 217
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNV-RPSCFVMSSFNHVSFIEXXXXXXXXXXXHEEGLN 142
L R+I + + H I + N+ RP F +FN V I+ + L+
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFNEVYIIQELMQTDLHRVISTQMLS 110
Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
+++ + + +L + R DL+ P+N L ++C +G ++ E
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHR-DLK----PSNLLINSNCDLKVCDFGLARIIDES 165
Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE-ELAGAPVSCASDIYRLGVL 261
++ E Q M + + T WY +PE L A S A D++ G +
Sbjct: 166 AADNS-----------EPTGQQSGMTE--XVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212
Query: 262 LFELF 266
L ELF
Sbjct: 213 LAELF 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,613,196
Number of Sequences: 62578
Number of extensions: 983807
Number of successful extensions: 3635
Number of sequences better than 100.0: 247
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 2805
Number of HSP's gapped (non-prelim): 547
length of query: 879
length of database: 14,973,337
effective HSP length: 107
effective length of query: 772
effective length of database: 8,277,491
effective search space: 6390223052
effective search space used: 6390223052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)