Query 002801
Match_columns 879
No_of_seqs 687 out of 6109
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 17:25:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002801.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1516-1519//hhsearch_pdb/002801hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 340.5 40.7 284 564-878 104-409 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 339.8 44.1 318 537-878 206-609 (611)
3 4g31_A Eukaryotic translation 1.0 1 1 333.0 10.1 247 6-331 28-289 (299)
4 4b9d_A Serine/threonine-protei 1.0 1 1 330.1 7.2 226 7-328 48-283 (350)
5 4fih_A Serine/threonine-protei 1.0 1 1 329.8 11.5 227 7-331 98-333 (346)
6 4fie_A Serine/threonine-protei 1.0 1 1 329.7 12.4 227 7-331 175-410 (423)
7 1nr0_A Actin interacting prote 1.0 1 1 328.7 43.2 318 535-878 162-565 (611)
8 3iz6_a 40S ribosomal protein R 1.0 1 1 328.1 31.2 305 545-878 48-373 (380)
9 4g56_B MGC81050 protein; prote 1.0 1 1 324.0 36.5 306 536-878 19-341 (357)
10 3ow8_A WD repeat-containing pr 1.0 1 1 323.8 40.4 286 564-878 28-319 (321)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=340.50 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=258.2
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 45899988999993899999999589929999548644767641134177235898138998178999699960798299
Q 002801 564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ 643 (879)
Q Consensus 564 l~~h~~~V~si~fspdg~~lat~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~~~dg~V~ 643 (879)
+.+|.+.|++++|+|++.++++|+.|++|+||++.+.... .....|...|.+++|++. +.+|++|+.||+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------RTLKGHTDSVQDISFDHS-GKLLASCSADMTIK 175 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------EEECCCSSCEEEEEECTT-SSEEEEEETTSCCC
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-------EEEECCCCCEEEEEECCC-CCEEEEEECCCEEE
T ss_conf 6166776899999699998999938985999989999377-------888166786878998599-99999991898199
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC-CCCEEEEEEECCCCCEEEEEE
Q ss_conf 9986887288981247874999998039999999994999499996999914889953-996699996289997999996
Q 002801 644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANVCCVQFPLDSGRSLAFGS 722 (879)
Q Consensus 644 iwd~~t~~~~~~~~~h~~~V~si~fsp~~~~~lasgs~Dg~V~iwD~~~~~~i~~~~~-~~~v~~v~~~p~~~~~l~tgs 722 (879)
+||+.+.+++..+.+|...|++++|+| ++.++++|+.|++|++||++++.++.++.. ...|.++.|+|+ +.++++|+
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~s 253 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCS 253 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSEEEEEE
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CCEEEEEC
T ss_conf 995899826699828999778999967-9999999968996999989999489999278862899999899-99999991
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCCEEEEEEC-C--------------------CCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 799199998579960069981578878999974-9--------------------9889999769909999569996455
Q 002801 723 ADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-D--------------------ATTLVSASTDNTLKLWDLSMCTSRV 781 (879)
Q Consensus 723 ~D~~I~iwDl~~~~~~~~~~~~h~~~V~~i~fs-~--------------------~~~l~sgs~D~~i~iwd~~~~~~~~ 781 (879)
.|+.|++||+++... ...+.+|...|.++.|+ + +.+|++|+.|+.|++||++++
T Consensus 254 ~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---- 328 (410)
T 1vyh_C 254 NDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---- 328 (410)
T ss_dssp TTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----
T ss_pred CCCEEEEEECCCCCE-EEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC----
T ss_conf 899099998989743-667337874589999858655431012125555566788889999938984999988999----
Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 68760797187886799999319999999929991999825999972000347999999998787899799999907999
Q 002801 782 IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSS 861 (879)
Q Consensus 782 ~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~Dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 861 (879)
.++..+.+|...|++++|+|++.+|++|+.|+.|++|++..++.+..+. +|..+|++++|+|++.
T Consensus 329 --~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-------------~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 329 --MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------------AHEHFVTSLDFHKTAP 393 (410)
T ss_dssp --EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------------CCSSCEEEEEECSSSS
T ss_pred --CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------------CCCCCEEEEEECCCCC
T ss_conf --6699997788858999994998999999597929999899990689984-------------7778689999828999
Q ss_pred CEEEEEECCCCEEEEEE
Q ss_conf 39999937984999991
Q 002801 862 NTLVAANSSGNIKILEM 878 (879)
Q Consensus 862 ~~l~s~~~Dg~I~iw~l 878 (879)
+|++++.||.|++|++
T Consensus 394 -~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 394 -YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -CEEEEETTSEEEEEC-
T ss_pred -EEEEEECCCCEEEEEC
T ss_conf -9999927994899737
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=339.80 Aligned_cols=318 Identities=20% Similarity=0.245 Sum_probs=218.1
Q ss_pred ECCCCCCCEEEEEECCCEEEEEECCC--CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC-------
Q ss_conf 40444681689850475797872135--345899988999993899999999589929999548644767641-------
Q 002801 537 INPFLEGLCKYLSFSKLRVKADLNQG--DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDI------- 607 (879)
Q Consensus 537 l~~~~d~~i~~w~~~~~~~~~~l~~~--~l~~h~~~V~si~fspdg~~lat~~~dg~I~iwd~~~~~~~~~~~------- 607 (879)
+++..|+.+++|+..+.+....+... ...+|.+.|.+++|+|++++|++++.|++|++||+.+........
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 99989991999889998286651366432356678789999979999999990898099996888701344047887664
Q ss_pred -----------------------------CCCEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE-C
Q ss_conf -----------------------------1341772358981389981789996999607982999986887288981-2
Q 002801 608 -----------------------------HYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEM-R 657 (879)
Q Consensus 608 -----------------------------~~~~~~~~~~~~I~~i~~~~~~~~~l~s~~~dg~V~iwd~~t~~~~~~~-~ 657 (879)
........|...|.+++|+| ++.+|++++.|+.|++||+.+++....+ .
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~ 364 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPD 364 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSC
T ss_pred EEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEECCC
T ss_conf 0689997388799995899689996889974469837888889999918-999899995898499997887925632166
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----------------------------------------E
Q ss_conf 47874999998039999999994999499996999914-----------------------------------------8
Q 002801 658 EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVS-----------------------------------------I 696 (879)
Q Consensus 658 ~h~~~V~si~fsp~~~~~lasgs~Dg~V~iwD~~~~~~-----------------------------------------i 696 (879)
.|...|.++.|++ ++ .+++++.|+.+++|+...... +
T Consensus 365 ~h~~~v~~~~~s~-~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~ 442 (611)
T 1nr0_A 365 VHATMITGIKTTS-KG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 442 (611)
T ss_dssp SCSSCEEEEEECT-TS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred CCCCEEEEEEECC-CC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCE
T ss_conf 7765078999878-99-699998489668954688543565212001489970799807996999996763999848943
Q ss_pred EEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-EEEECCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEC
Q ss_conf 899539966999962899979999967991999985799600-69981578878999974-9988999976990999956
Q 002801 697 GTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIP-LCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDL 774 (879)
Q Consensus 697 ~~~~~~~~v~~v~~~p~~~~~l~tgs~D~~I~iwDl~~~~~~-~~~~~~h~~~V~~i~fs-~~~~l~sgs~D~~i~iwd~ 774 (879)
..+.+...+.+++|+|+ +.++++|+.|+.|++||+...... ... .+|...|+++.|+ ++++|++++.|++|++|++
T Consensus 443 ~~~~~~~~v~~va~spd-g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 443 TEVPISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp EEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred EEEECCCCCEEEEEECC-CCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEEC
T ss_conf 46406889549999289-9899996899739999945992224101-577886079999899998999948998999885
Q ss_pred CCCCCCCCCCCEE--EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCE-ECCCCCCCCCCCCCCCCC-CCC
Q ss_conf 9996455687607--971878867999993199999999299919998259999720-003479999999987878-997
Q 002801 775 SMCTSRVIDTPLH--SFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPAL-SFNFNHADPLSGPETDDA-AQF 850 (879)
Q Consensus 775 ~~~~~~~~~~~~~--~~~~h~~~v~~v~~sp~~~~lasgs~Dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~h-~~~ 850 (879)
.... .++. .+.+|...|++++|+|++++||+||.|+.|++|++..+.... .. ..+| ...
T Consensus 521 ~~~~-----~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~------------~~~h~~~~ 583 (611)
T 1nr0_A 521 ANNF-----ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------------KGAHAMSS 583 (611)
T ss_dssp GGTT-----EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE------------TTSSTTSC
T ss_pred CCCC-----CEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHH------------HCCCCCCC
T ss_conf 7787-----223210264046642589989989979999799729999788755563264------------44676567
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 9999990799939999937984999991
Q 002801 851 ISSVCWRGQSSNTLVAANSSGNIKILEM 878 (879)
Q Consensus 851 V~~v~~~p~~~~~l~s~~~Dg~I~iw~l 878 (879)
|.+++|+|++. |++++.||+|++|++
T Consensus 584 v~~v~fs~d~~--l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 584 VNSVIWLNETT--IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEEEEEETTE--EEEEETTSCEEEEEC
T ss_pred EEEEEECCCCE--EEEECCCCCEEEEEC
T ss_conf 11899858997--999528877899844
No 3
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=1.00 E-value=1 Score=333.00 Aligned_cols=247 Identities=23% Similarity=0.359 Sum_probs=187.7
Q ss_pred CCCCCCCCCCCCCCCC-CCCC--CCCCEEECCCCCCCCCCCCCCCCCCCC----------CCCCEEEEEEECCCCHHHHH
Q ss_conf 5554231025899983-2222--357344204654567898776344434----------45752888760885334530
Q 002801 6 LRGERFGVRGDDSNDF-ELRK--HSDGVELTHGDHLRNQGGLSGVCENEA----------AIDPFVHAIEWGDVSLRQWL 72 (879)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~e~~~g~sL~~~l 72 (879)
..|+.++++-...... ..++ .++...++..+|+|++.+++ ++.+.. ...+|++||||.||+|.+++
T Consensus 28 ~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~-~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l 106 (299)
T 4g31_A 28 VDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFN-AWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWM 106 (299)
T ss_dssp TTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEE-EEEEEC----------CEEEEEEEECCCSCCHHHHH
T ss_pred CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE-EEEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHH
T ss_conf 9997999999953578789999999999998678989873988-998368642122567774799999367999099999
Q ss_pred CCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69999--8785688999999999998521037110367886234244787245306655698999866665456544468
Q 002801 73 DKPKR--SVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKD 150 (879)
Q Consensus 73 ~~~~~--~~~~~~~~~i~~qi~~~l~~lHs~givH~DlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~ 150 (879)
+.... ..++..++.|++||+.||+|||++|||||||||+|||++.++.+|++|||+++............
T Consensus 107 ~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~-------- 178 (299)
T 4g31_A 107 NGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL-------- 178 (299)
T ss_dssp HTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC---------------------
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCEECCCCCCCCCCC--------
T ss_conf 725899766799999999999999999998869435476899678799958980470465657875322213--------
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 89999611224243012235433247876543342333566557500001353322223333210000123579884310
Q 002801 151 LSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQI 230 (879)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (879)
.......+.+
T Consensus 179 ----------------------------------------------------------------------~~~~~~~~~~ 188 (299)
T 4g31_A 179 ----------------------------------------------------------------------TPMPAYARHT 188 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------CCCCCCCCCC
T ss_conf ----------------------------------------------------------------------4555433457
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 13345620044132699988658600489999996258999815576876302457990222039146899997049999
Q 002801 231 LLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEP 310 (879)
Q Consensus 231 ~~~gt~~Y~aPE~~~~~~~s~~sDIySlGvil~el~~pf~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~L~~dP 310 (879)
..+||++|||||++.+.+|+.++|||||||+||||++||.+..+....+..++...+|+.+...++.+.+|+.+||+.||
T Consensus 189 ~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP 268 (299)
T 4g31_A 189 GQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSP 268 (299)
T ss_dssp ---CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSG
T ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 76668241399998699989789999899999998169998627999999985689998876469899999999868996
Q ss_pred CCCCCHHHHHHCCCCCCCCCC
Q ss_conf 999998898615234599671
Q 002801 311 SGRPKMGELLQSEFLNEPRDS 331 (879)
Q Consensus 311 ~~Rpt~~eil~~~~l~~~~~~ 331 (879)
.+|||+.|+++||||+....+
T Consensus 269 ~~Rps~~eil~h~~~~~~~~p 289 (299)
T 4g31_A 269 MERPEAINIIENAVFEDLDFP 289 (299)
T ss_dssp GGSCCHHHHHTSGGGCCC---
T ss_pred HHCCCHHHHHCCHHHCCCCCC
T ss_conf 689199999619855789999
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=330.15 Aligned_cols=226 Identities=18% Similarity=0.220 Sum_probs=178.9
Q ss_pred CCCCCCCCCCCCC--CC----CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHC-CCCCCC
Q ss_conf 5542310258999--83----2222357344204654567898776344434457528887608853345306-999987
Q 002801 7 RGERFGVRGDDSN--DF----ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLD-KPKRSV 79 (879)
Q Consensus 7 ~~~~~~~~~~~~~--~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~~~g~sL~~~l~-~~~~~~ 79 (879)
.|+.++++-.... .. .|++|.. .+...+|+|++.+++ ++.+ ...+|||||||+||+|.++|+ .....+
T Consensus 48 ~~~~vAiK~i~~~~~~~~~~~~~~~E~~--il~~l~HpnIV~~~~-~~~~--~~~~yiVmEy~~gg~L~~~i~~~~~~~~ 122 (350)
T 4b9d_A 48 DGRQYVIKEINISRMSSKEREESRREVA--VLANMKHPNIVQYRE-SFEE--NGSLYIVMDYCEGGDLFKRINAQKGVLF 122 (350)
T ss_dssp TCCEEEEEEEECTTSCHHHHHHHHHHHH--HHHHCCCTTBCCEEE-EEEE--TTEEEEEEECCTTCBHHHHHHHTTTCCC
T ss_pred CCCEEEEEEEEHHHCCHHHHHHHHHHHH--HHHHCCCCCCCCEEE-EEEE--CCEEEEEEECCCCCCHHHHHHHCCCCCC
T ss_conf 9989999998658789799999999999--998779989891999-9998--9999999948899839999997389999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 85688999999999998521037110367886234244787245306655698999866665456544468899996112
Q 002801 80 DVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDM 159 (879)
Q Consensus 80 ~~~~~~~i~~qi~~~l~~lHs~givH~DlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (879)
++.+++.|++||+.||+|||++|||||||||+|||++.++.+|++|||+++......
T Consensus 123 ~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~----------------------- 179 (350)
T 4b9d_A 123 QEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV----------------------- 179 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH-----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCC-----------------------
T ss_conf 789999999999999999998991513597899798789998976465214406885-----------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 24243012235433247876543342333566557500001353322223333210000123579884310133456200
Q 002801 160 LQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYA 239 (879)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~ 239 (879)
...+..+||++||
T Consensus 180 -------------------------------------------------------------------~~~~~~~GT~~Ym 192 (350)
T 4b9d_A 180 -------------------------------------------------------------------ELARACIGTPYYL 192 (350)
T ss_dssp -------------------------------------------------------------------HHHHHHHSCCTTC
T ss_pred -------------------------------------------------------------------CCCCCCCCCCCCC
T ss_conf -------------------------------------------------------------------4101457883603
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 4413269998865860048999999625---8999815576876302457990222039146899997049999999998
Q 002801 240 SPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM 316 (879)
Q Consensus 240 aPE~~~~~~~s~~sDIySlGvil~el~~---pf~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~ 316 (879)
|||++.+..|+.++|||||||+||||++ ||..... ...+..+....+++.....++++.+||.+||+.||.+|||+
T Consensus 193 APE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~ 271 (350)
T 4b9d_A 193 SPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-KNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSV 271 (350)
T ss_dssp CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCH
T ss_conf 99998799989599999999999999978799899699-99999998089999975579999999999855896679089
Q ss_pred HHHHHCCCCCCC
Q ss_conf 898615234599
Q 002801 317 GELLQSEFLNEP 328 (879)
Q Consensus 317 ~eil~~~~l~~~ 328 (879)
.|+|+||||...
T Consensus 272 ~e~l~hp~~~~~ 283 (350)
T 4b9d_A 272 NSILEKGFIAKR 283 (350)
T ss_dssp HHHHTSHHHHTT
T ss_pred HHHHCCHHHHCC
T ss_conf 999639976167
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=329.83 Aligned_cols=227 Identities=16% Similarity=0.241 Sum_probs=177.9
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHH
Q ss_conf 55423102589----99832222357344204654567898776344434457528887608853345306999987856
Q 002801 7 RGERFGVRGDD----SNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVY 82 (879)
Q Consensus 7 ~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~~~g~sL~~~l~~~~~~~~~~ 82 (879)
.|+.++++-.. .....+..|.. .+...+|+|++.+++ ++.++ ..+|||||||+||+|.+++++ ..+++.
T Consensus 98 tg~~vAiK~i~~~~~~~~~~~~~Ei~--il~~l~HpnIV~l~~-~~~~~--~~~~ivmEy~~gg~L~~~l~~--~~l~e~ 170 (346)
T 4fih_A 98 SGKLVAVKKMDLRKQQRRELLFNEVV--IMRDYQHENVVEMYN-SYLVG--DELWVVMEFLEGGALTDIVTH--TRMNEE 170 (346)
T ss_dssp TCCEEEEEEEEGGGCSSGGGGHHHHH--HHHHCCCTTBCCEEE-EEEET--TEEEEEECCCTTEEHHHHHHH--SCCCHH
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHH--HHHHCCCCCCCCEEE-EEEEC--CEEEEEEECCCCCCHHHHHHC--CCCCHH
T ss_conf 99899999985276568999999999--998679989991999-99989--999999969899808999871--898999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 88999999999998521037110367886234244787245306655698999866665456544468899996112242
Q 002801 83 ECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQR 162 (879)
Q Consensus 83 ~~~~i~~qi~~~l~~lHs~givH~DlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (879)
+++.|++||+.||+|||++|||||||||+|||++.++.+|++|||+++.......
T Consensus 171 ~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~------------------------- 225 (346)
T 4fih_A 171 QIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP------------------------- 225 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-------------------------
T ss_conf 9999999999999999988835562788997887999889902757536678877-------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 43012235433247876543342333566557500001353322223333210000123579884310133456200441
Q 002801 163 RTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE 242 (879)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE 242 (879)
..+..+||++|||||
T Consensus 226 -----------------------------------------------------------------~~~~~~GTp~YmAPE 240 (346)
T 4fih_A 226 -----------------------------------------------------------------RRKSLVGTPYWMAPE 240 (346)
T ss_dssp -----------------------------------------------------------------CBCCCCSCGGGCCHH
T ss_pred -----------------------------------------------------------------CCCCCCCCCCCCCHH
T ss_conf -----------------------------------------------------------------534656275827999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHC---CCCCCHHHHHHHHHHCCCCC--CCHHHCCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 3269998865860048999999625---89998155768763024579--902220391468999970499999999988
Q 002801 243 ELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL--PPQLLLKFPKEASFCLWLLHPEPSGRPKMG 317 (879)
Q Consensus 243 ~~~~~~~s~~sDIySlGvil~el~~---pf~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 317 (879)
++.+.+|+.++|||||||+||||++ ||.... ....+..+..... .+.+...++++.+||.+||..||.+|||+.
T Consensus 241 vl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ 319 (346)
T 4fih_A 241 LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-PLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAA 319 (346)
T ss_dssp HHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-HHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH
T ss_conf 9779999968999999999999997879989859-999999997179998875022999999999998679956890999
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 98615234599671
Q 002801 318 ELLQSEFLNEPRDS 331 (879)
Q Consensus 318 eil~~~~l~~~~~~ 331 (879)
|+|+||||.....+
T Consensus 320 e~l~Hp~~~~~~~p 333 (346)
T 4fih_A 320 ELLKHPFLAKAGPP 333 (346)
T ss_dssp HHTTCGGGGGCCCG
T ss_pred HHHCCHHHCCCCCC
T ss_conf 99609865689997
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=329.72 Aligned_cols=227 Identities=17% Similarity=0.249 Sum_probs=177.7
Q ss_pred CCCCCCCCCCCCC----CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHH
Q ss_conf 5542310258999----832222357344204654567898776344434457528887608853345306999987856
Q 002801 7 RGERFGVRGDDSN----DFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVY 82 (879)
Q Consensus 7 ~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~~~g~sL~~~l~~~~~~~~~~ 82 (879)
.|+.++++-..-. ...+..|. ..+...+|+|++.+++ ++.+ ...+|||||||+||+|.++++. ..+++.
T Consensus 175 tg~~vAiK~i~~~~~~~~~~~~~Ei--~il~~l~HpnIV~l~~-~~~~--~~~~~iVmEy~~gG~L~~~i~~--~~l~e~ 247 (423)
T 4fie_A 175 SGKLVAVKKMDLRKQQRRELLFNEV--VIMRDYQHENVVEMYN-SYLV--GDELWVVMEFLEGGALTDIVTH--TRMNEE 247 (423)
T ss_dssp TCCEEEEEEEESTTCSSGGGHHHHH--HHHHHCCCTTBCCEEE-EEEE--TTEEEEEEECCTTEEHHHHHHH--SCCCHH
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHH--HHHHHCCCCCCCCEEE-EEEE--CCEEEEEEECCCCCCHHHHHHC--CCCCHH
T ss_conf 9989999998625546899999999--9998579989871689-9998--9999999969899828988761--698999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 88999999999998521037110367886234244787245306655698999866665456544468899996112242
Q 002801 83 ECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQR 162 (879)
Q Consensus 83 ~~~~i~~qi~~~l~~lHs~givH~DlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (879)
++..|++||+.||+|||++|||||||||+||||+.++.+|++|||+|+.+.....
T Consensus 248 ~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~------------------------- 302 (423)
T 4fie_A 248 QIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP------------------------- 302 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-------------------------
T ss_conf 9999999999999999988904465787778985899989803726547778876-------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 43012235433247876543342333566557500001353322223333210000123579884310133456200441
Q 002801 163 RTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE 242 (879)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE 242 (879)
..+..+||++|||||
T Consensus 303 -----------------------------------------------------------------~~~~~~GTp~YmAPE 317 (423)
T 4fie_A 303 -----------------------------------------------------------------RRKSLVGTPYWMAPE 317 (423)
T ss_dssp -----------------------------------------------------------------CBCCCEECTTTCCHH
T ss_pred -----------------------------------------------------------------CCCCCCCCCCCCCHH
T ss_conf -----------------------------------------------------------------434666474727999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHC---CCCCCHHHHHHHHHHCCCCC--CCHHHCCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 3269998865860048999999625---89998155768763024579--902220391468999970499999999988
Q 002801 243 ELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL--PPQLLLKFPKEASFCLWLLHPEPSGRPKMG 317 (879)
Q Consensus 243 ~~~~~~~s~~sDIySlGvil~el~~---pf~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 317 (879)
++.+..|+.++|||||||+||||++ ||.... ....+..+..... .+.+...++.+.+||.+||..||.+|||+.
T Consensus 318 vl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ 396 (423)
T 4fie_A 318 LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-PLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAA 396 (423)
T ss_dssp HHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-HHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH
T ss_conf 9779999968999999999999997879989869-999999997279988765012999999999998678956890999
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 98615234599671
Q 002801 318 ELLQSEFLNEPRDS 331 (879)
Q Consensus 318 eil~~~~l~~~~~~ 331 (879)
|+|+||||.....+
T Consensus 397 ell~Hp~~~~~~~p 410 (423)
T 4fie_A 397 ELLKHPFLAKAGPP 410 (423)
T ss_dssp HHTTCGGGGGCCCG
T ss_pred HHHCCHHHCCCCCC
T ss_conf 99609875689997
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=328.69 Aligned_cols=318 Identities=16% Similarity=0.252 Sum_probs=222.1
Q ss_pred CEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 12404446816898504757978721353458999889999938999999995899299995486447676411341772
Q 002801 535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM 614 (879)
Q Consensus 535 ~~l~~~~d~~i~~w~~~~~~~~~~l~~~~l~~h~~~V~si~fspdg~~lat~~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 614 (879)
.++++..|+.+++|+..+.+....+. +|.+.|++++|+||+++||+|+.|++|++|+..+...............
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred EEEEEECCCEEEEEECCCCEEEEEEC-----CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCC
T ss_conf 99999289809999799975766520-----0257169999979999899998999199988999828665136643235
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEE---------------------------------------
Q ss_conf 35898138998178999699960798299998688728898---------------------------------------
Q 002801 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTE--------------------------------------- 655 (879)
Q Consensus 615 ~~~~~I~~i~~~~~~~~~l~s~~~dg~V~iwd~~t~~~~~~--------------------------------------- 655 (879)
.|...|.+++|+|. +..|++++.|++|++||+.+++....
T Consensus 237 ~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 237 AHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS 315 (611)
T ss_dssp SSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE
T ss_pred CCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCC
T ss_conf 66787899999799-99999990898099996888701344047887664068999738879999589968999688997
Q ss_pred ----ECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE--CCCCEEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf ----124787499999803999999999499949999699991488995--39966999962899979999967991999
Q 002801 656 ----MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--TKANVCCVQFPLDSGRSLAFGSADHRIYY 729 (879)
Q Consensus 656 ----~~~h~~~V~si~fsp~~~~~lasgs~Dg~V~iwD~~~~~~i~~~~--~~~~v~~v~~~p~~~~~l~tgs~D~~I~i 729 (879)
+.+|...|++++|+| ++.++++++.|++|++||+.++.....+. +...+.+++|+++ + .+++++.|+.+++
T Consensus 316 ~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~-~-~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 316 IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-G-DLFTVSWDDHLKV 392 (611)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-S-CEEEEETTTEEEE
T ss_pred CCEEECCCCCCEEEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCC-C-CEEEEECCCCEEE
T ss_conf 4469837888889999918-99989999589849999788792563216677650789998789-9-6999984896689
Q ss_pred EECCCCCE-------------E---------------------------EEEECCCCCCEEEEEEC-CCCEEEEEECCCC
Q ss_conf 98579960-------------0---------------------------69981578878999974-9988999976990
Q 002801 730 YDLRNSKI-------------P---------------------------LCTLIGHNKTVSYVKFV-DATTLVSASTDNT 768 (879)
Q Consensus 730 wDl~~~~~-------------~---------------------------~~~~~~h~~~V~~i~fs-~~~~l~sgs~D~~ 768 (879)
|++..... + +..+ .|...+.++.|+ ++++|++|+.|++
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~ 471 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSK 471 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEE-ECCCCCEEEEEECCCCEEEEECCCCE
T ss_conf 54688543565212001489970799807996999996763999848943464-06889549999289989999689973
Q ss_pred EEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 99995699964556876079718788679999931999999992999199982599997200034799999999878789
Q 002801 769 LKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAA 848 (879)
Q Consensus 769 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~Dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 848 (879)
|++||+..... ..+.. .+|...|++++|+|++++|++++.|+.|++|++.....+... .....|.
T Consensus 472 v~lwd~~~~~~----~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~----------~~~~~H~ 536 (611)
T 1nr0_A 472 VHVYKLSGASV----SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT----------NSWTFHT 536 (611)
T ss_dssp EEEEEEETTEE----EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC----------CCCCCCS
T ss_pred EEEEECCCCCE----EEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEE----------EEEEECC
T ss_conf 99999459922----24101-577886079999899998999948998999885778722321----------0264046
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 979999990799939999937984999991
Q 002801 849 QFISSVCWRGQSSNTLVAANSSGNIKILEM 878 (879)
Q Consensus 849 ~~V~~v~~~p~~~~~l~s~~~Dg~I~iw~l 878 (879)
..|.+++|+|++. +|++++.|++|++|++
T Consensus 537 ~~V~~v~fspdg~-~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 537 AKVACVSWSPDNV-RLATGSLDNSVIVWNM 565 (611)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCEEEEEECCCCC-EEEEEECCCCEEEEEC
T ss_conf 6425899899899-7999979972999978
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=328.06 Aligned_cols=305 Identities=18% Similarity=0.267 Sum_probs=256.0
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 68985047579787213534589998899999389999999958992999954864476764113417723589813899
Q 002801 545 CKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSIC 624 (879)
Q Consensus 545 i~~w~~~~~~~~~~l~~~~l~~h~~~V~si~fspdg~~lat~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~ 624 (879)
+..|+..+..+...+. +|.+.|++++|+|++++|++|+.|++|+||+..+... ......|...|.+++
T Consensus 48 ~~~~~~~~~~~~~~l~-----gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------~~~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQ-----GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------THAIKLHCPWVMECA 115 (380)
T ss_dssp CCCCCCCCCEEEEEEC-----CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------EEEEECCCTTCCCCE
T ss_pred CCCCCCCEEEEEECCC-----CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC-------CEEEECCCCCEEEEE
T ss_conf 6555652139820000-----4534778999968999899991898099987888860-------148855998789999
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCE-------EEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 817899969996079829999868872-------8898124787499999803999999999499949999699991488
Q 002801 625 WNSYIKSQIASSNFEGVVQVWDVSRSQ-------VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIG 697 (879)
Q Consensus 625 ~~~~~~~~l~s~~~dg~V~iwd~~t~~-------~~~~~~~h~~~V~si~fsp~~~~~lasgs~Dg~V~iwD~~~~~~i~ 697 (879)
|+|. +..+++++.|+.+++|++.+.. ....+.+|...|.++.|.|.++..+++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCC-CCEEEEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEE
T ss_conf 9899-998999547985899989777555677331264068975468999964899789997799819999867795789
Q ss_pred EEE------CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEEEC-CCCEEEEEECCCCEE
Q ss_conf 995------3996699996289997999996799199998579960069981578878999974-998899997699099
Q 002801 698 TIK------TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLK 770 (879)
Q Consensus 698 ~~~------~~~~v~~v~~~p~~~~~l~tgs~D~~I~iwDl~~~~~~~~~~~~h~~~V~~i~fs-~~~~l~sgs~D~~i~ 770 (879)
.+. +...|.++.|+|.+++++++|+.|+.|++||++....++..+.+|...|+++.|+ ++.+|++++.|++|+
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred EEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEE
T ss_conf 96056678875676999920699998999978986999978889734699887488757999916999699983899699
Q ss_pred EEECCCCCCCCCCCCEEEEECCC-------CCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEECCCCCCCCCCCCC
Q ss_conf 99569996455687607971878-------86799999319999999929991999825999972000347999999998
Q 002801 771 LWDLSMCTSRVIDTPLHSFTGHT-------NVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE 843 (879)
Q Consensus 771 iwd~~~~~~~~~~~~~~~~~~h~-------~~v~~v~~sp~~~~lasgs~Dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 843 (879)
+||++++ .++..+..+. ..+++++|+|++.++++|+.|+.|++|+...++.+..+.. .
T Consensus 275 lwd~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---------~ 339 (380)
T 3iz6_a 275 LFDMRTG------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT---------L 339 (380)
T ss_dssp EEETTTT------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC---------S
T ss_pred EEECCCC------CEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC---------C
T ss_conf 9988899------688986156555665568638999889999899997999799998877815789702---------3
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 78789979999990799939999937984999991
Q 002801 844 TDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 878 (879)
Q Consensus 844 ~~~h~~~V~~v~~~p~~~~~l~s~~~Dg~I~iw~l 878 (879)
..+|.+.|++++|+|++. +|++++.||.|++|++
T Consensus 340 ~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEEC
T ss_pred CCCCCCCEEEEEECCCCC-EEEEEECCCCEEEEEC
T ss_conf 677778457999899999-8999608998899953
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=323.97 Aligned_cols=306 Identities=18% Similarity=0.225 Sum_probs=252.0
Q ss_pred EECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEC------CCCEEEEECCCCCCCCCCCCC
Q ss_conf 24044468168985047579787213534589998899999389999999958------992999954864476764113
Q 002801 536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGV------NKKIKVFECDAIINENRDIHY 609 (879)
Q Consensus 536 ~l~~~~d~~i~~w~~~~~~~~~~l~~~~l~~h~~~V~si~fspdg~~lat~~~------dg~I~iwd~~~~~~~~~~~~~ 609 (879)
++.+..+.....|+.... ....|...|++++|+|||++||+|+. |+.|++|+..+..... ..
T Consensus 19 ~~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---~~ 86 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVT---------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---SL 86 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---GG
T ss_pred EEECCCCCCCCCCCCCCC---------CCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCE---EE
T ss_conf 792588765552689999---------744210788999998999999998289871326869997899987140---58
Q ss_pred CEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE----EECCCCCCEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 417723589813899817899969996079829999868872889----8124787499999803999999999499949
Q 002801 610 PVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT----EMREHERRVWSIDFSSADPTLLASGSDDGSV 685 (879)
Q Consensus 610 ~~~~~~~~~~I~~i~~~~~~~~~l~s~~~dg~V~iwd~~t~~~~~----~~~~h~~~V~si~fsp~~~~~lasgs~Dg~V 685 (879)
......|...|.+++|+|. ..+++++.||+|++||+.+++... ...+|...|++++|+| ++++|++|+.|+.|
T Consensus 87 ~~~~~~~~~~V~~~~~s~d--~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v 163 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSE--KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSV 163 (357)
T ss_dssp CSEEEECSSCEEEEEEETT--TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred ECCCCCCCCCEEEEEECCC--CCEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEEECC-CCCEEEEEECCCEE
T ss_conf 5024788798799999689--98999989998999344566404787421378889889999979-98999999698939
Q ss_pred EEEECCCCCEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--ECCCCCCEEEEEEC--CCCEE
Q ss_conf 9996999914889953-9966999962899979999967991999985799600699--81578878999974--99889
Q 002801 686 KLWSINQGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT--LIGHNKTVSYVKFV--DATTL 760 (879)
Q Consensus 686 ~iwD~~~~~~i~~~~~-~~~v~~v~~~p~~~~~l~tgs~D~~I~iwDl~~~~~~~~~--~~~h~~~V~~i~fs--~~~~l 760 (879)
++||+++++.+..+.. ...|.+++|+|++..++++++.|+.|++||+++++. ... +..|...++++.|+ .+.+|
T Consensus 164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-ATRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-BCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred EEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCE-EEEEEECCCCCCCCCHHHHHCCCCEE
T ss_conf 99989999599998277897889998368872266550578638878899964-01233002334442111121353059
Q ss_pred EEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCC-CEEEEEECCCCEEEEECCCCCCCEECCCCCCCCC
Q ss_conf 999769909999569996455687607971878867999993199-9999992999199982599997200034799999
Q 002801 761 VSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD-GYVATGSETNEVFVYHKAFPMPALSFNFNHADPL 839 (879)
Q Consensus 761 ~sgs~D~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~lasgs~Dg~v~iw~~~~~~~~~~~~~~~~~~~ 839 (879)
++|+.|+.|++||++++ .++..+.+|...|++++|+|++ .+||+|+.|+.|++|++..++.+..
T Consensus 243 a~g~~d~~i~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--------- 307 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--------- 307 (357)
T ss_dssp EEEESSSCEEEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE---------
T ss_pred EEEECCCCEEEEECCCC------CEEEEEECCCEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEE---------
T ss_conf 98213542068989999------582899355313877997689998999995899799998999958697---------
Q ss_pred CCCCCCCCCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEE
Q ss_conf 9998787899799999907-99939999937984999991
Q 002801 840 SGPETDDAAQFISSVCWRG-QSSNTLVAANSSGNIKILEM 878 (879)
Q Consensus 840 ~~~~~~~h~~~V~~v~~~p-~~~~~l~s~~~Dg~I~iw~l 878 (879)
.+|...|++|+|+| ++. +|++++.||.|++|++
T Consensus 308 -----~~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 308 -----LSHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHL 341 (357)
T ss_dssp -----CCCSSCEEEEEECSSSTT-EEEEEETTSCEEEEEC
T ss_pred -----CCCCCCEEEEEEECCCCC-EEEEECCCCEEEEEEC
T ss_conf -----889998899999589999-9999918995999977
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=323.82 Aligned_cols=286 Identities=21% Similarity=0.328 Sum_probs=256.8
Q ss_pred CCCCCCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 4589998899999389----999999958992999954864476764113417723589813899817899969996079
Q 002801 564 LLNSSNLVCSLSFDRD----GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639 (879)
Q Consensus 564 l~~h~~~V~si~fspd----g~~lat~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~~~d 639 (879)
+.+|.+.|++++|+|+ +.+|+||+.|++|+||++..... ........|...|.+++|++. +..+++++.|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D 101 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----DLQWSLEGHQLGVVSVDISHT-LPIAASSSLD 101 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECSS-SSEEEEEETT
T ss_pred CCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCE-----EEEEEECCCCCCEEEEEECCC-CCEEEEEECC
T ss_conf 1568896799998248888888899984999899988989974-----366600567788899998899-9989999379
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC-CCCEEEEEEECCCCCEE
Q ss_conf 82999986887288981247874999998039999999994999499996999914889953-99669999628999799
Q 002801 640 GVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANVCCVQFPLDSGRSL 718 (879)
Q Consensus 640 g~V~iwd~~t~~~~~~~~~h~~~V~si~fsp~~~~~lasgs~Dg~V~iwD~~~~~~i~~~~~-~~~v~~v~~~p~~~~~l 718 (879)
++|++||+.+++.+..+..|...+++++|+| ++.++++|+.|+.|++||+.++.....+.. ...+.+++|+|+ ++++
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l 179 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD-GKYL 179 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT-SSEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCC-CCEE
T ss_conf 8099997899979899937985679999999-9998999838991999986799466774389942999999899-9999
Q ss_pred EEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9996799199998579960069981578878999974-998899997699099995699964556876079718788679
Q 002801 719 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN 797 (879)
Q Consensus 719 ~tgs~D~~I~iwDl~~~~~~~~~~~~h~~~V~~i~fs-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 797 (879)
++|+.|+.|++||+++++ ++..+.+|..+|+++.|+ ++.+|++++.|+.|++||++.. .++..+.+|...|.
T Consensus 180 asg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------NLAGTLSGHASWVL 252 (321)
T ss_dssp EEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------CEEEEECCCSSCEE
T ss_pred EEECCCCEEEEEECCCCC-EEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC------CEEEEECCCCCCEE
T ss_conf 999289839999999990-99998025896018999489998999909980999878996------32589868888268
Q ss_pred EEEEECCCCEEEEEECCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 99993199999999299919998259999720003479999999987878997999999079993999993798499999
Q 002801 798 FVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE 877 (879)
Q Consensus 798 ~v~~sp~~~~lasgs~Dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~s~~~Dg~I~iw~ 877 (879)
+++|+|++.+|++++.|+.|++|++..++++..+. +|...|.+++|+|++. .|++++.||.|++|+
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------------~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-------------DHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------CCSSCEEEEEECTTSS-EEEEEETTCCEEEEE
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC-------------CCCCCEEEEEECCCCC-EEEEEECCCEEEEEE
T ss_conf 99997999989998189809999499988888983-------------7877389999989999-999975898089995
Q ss_pred E
Q ss_conf 1
Q 002801 878 M 878 (879)
Q Consensus 878 l 878 (879)
+
T Consensus 319 ~ 319 (321)
T 3ow8_A 319 C 319 (321)
T ss_dssp C
T ss_pred C
T ss_conf 7
Done!