Query 002802
Match_columns 879
No_of_seqs 263 out of 1110
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 2E-178 5E-183 1617.3 90.0 853 19-875 2-855 (900)
2 KOG1041 Translation initiation 100.0 5E-146 1E-150 1321.3 72.6 763 48-876 42-831 (876)
3 KOG1042 Germ-line stem cell di 100.0 3E-127 6E-132 1049.6 47.5 705 56-873 87-823 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 1.6E-98 3E-103 856.7 41.9 402 448-875 1-421 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 8.7E-94 1.9E-98 825.6 45.6 430 417-875 3-445 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 6.2E-85 1.4E-89 738.7 40.3 377 461-875 2-390 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.8E-69 3.9E-74 594.7 27.0 287 573-875 1-296 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 2.7E-46 5.9E-51 425.9 23.0 283 555-875 95-399 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 8.9E-23 1.9E-27 197.1 10.9 130 286-427 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 4.8E-19 1E-23 165.9 11.7 107 286-403 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 6.9E-19 1.5E-23 164.7 10.6 106 285-403 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 2.9E-18 6.3E-23 160.0 8.4 106 287-405 3-116 (117)
13 PF08699 DUF1785: Domain of un 99.5 3.4E-15 7.3E-20 117.8 4.0 51 234-285 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 3.3E-13 7.2E-18 128.7 6.5 84 309-404 27-133 (135)
15 COG1431 Argonaute homolog, imp 99.0 7.9E-09 1.7E-13 115.6 17.0 338 470-876 308-666 (685)
16 cd02843 PAZ_dicer_like PAZ dom 98.4 4.4E-07 9.5E-12 83.8 5.7 64 311-388 39-106 (122)
17 PF13032 DUF3893: Domain of un 91.8 0.33 7.1E-06 46.9 5.7 54 822-876 66-119 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 86.0 5.2 0.00011 39.5 9.4 108 646-783 9-120 (155)
19 TIGR00194 uvrC excinuclease AB 76.3 19 0.00041 43.3 11.3 110 649-788 382-498 (574)
20 PRK11617 endonuclease V; Provi 76.0 1E+02 0.0022 32.5 15.1 35 835-876 179-213 (224)
21 PRK14672 uvrC excinuclease ABC 67.9 42 0.00091 40.9 11.4 110 646-786 452-564 (691)
22 PRK12306 uvrC excinuclease ABC 63.8 57 0.0012 38.8 11.5 107 647-786 365-475 (519)
23 PRK14671 uvrC excinuclease ABC 60.5 64 0.0014 39.3 11.4 108 647-787 414-525 (621)
24 PRK14670 uvrC excinuclease ABC 60.4 82 0.0018 38.0 12.1 111 647-786 357-471 (574)
25 PF00763 THF_DHG_CYH: Tetrahyd 60.1 20 0.00043 33.6 5.6 69 556-625 16-85 (117)
26 cd06559 Endonuclease_V Endonuc 59.0 55 0.0012 34.0 9.1 42 823-874 166-207 (208)
27 PRK14185 bifunctional 5,10-met 55.8 31 0.00068 37.7 7.0 69 556-624 17-86 (293)
28 PRK14667 uvrC excinuclease ABC 55.5 83 0.0018 37.9 11.0 108 647-787 360-471 (567)
29 PRK14171 bifunctional 5,10-met 54.0 44 0.00095 36.5 7.7 67 558-624 20-87 (288)
30 PRK14184 bifunctional 5,10-met 53.2 43 0.00094 36.5 7.5 69 556-624 17-86 (286)
31 PRK14669 uvrC excinuclease ABC 51.1 1.1E+02 0.0024 37.3 11.2 108 647-786 395-506 (624)
32 PRK14187 bifunctional 5,10-met 50.0 56 0.0012 35.8 7.7 68 558-625 20-88 (294)
33 KOG1924 RhoA GTPase effector D 49.5 28 0.0006 42.2 5.6 7 360-366 860-866 (1102)
34 PRK14176 bifunctional 5,10-met 49.5 63 0.0014 35.3 8.0 67 559-625 27-94 (287)
35 PRK14183 bifunctional 5,10-met 49.3 52 0.0011 35.8 7.3 55 570-624 31-86 (281)
36 PRK14186 bifunctional 5,10-met 48.5 54 0.0012 36.0 7.4 67 559-625 21-88 (297)
37 PLN02897 tetrahydrofolate dehy 47.8 54 0.0012 36.7 7.3 65 560-624 76-141 (345)
38 PRK00558 uvrC excinuclease ABC 47.8 1.1E+02 0.0025 37.0 10.7 100 647-778 382-485 (598)
39 PRK14177 bifunctional 5,10-met 47.5 60 0.0013 35.4 7.5 68 557-624 20-88 (284)
40 PRK10792 bifunctional 5,10-met 47.5 53 0.0011 35.9 7.1 70 556-625 19-89 (285)
41 PRK14666 uvrC excinuclease ABC 46.4 1.4E+02 0.003 36.7 11.0 100 647-778 471-571 (694)
42 PLN02616 tetrahydrofolate dehy 46.4 63 0.0014 36.4 7.6 66 559-624 92-158 (364)
43 PLN02516 methylenetetrahydrofo 46.3 68 0.0015 35.3 7.7 66 560-625 29-95 (299)
44 PRK14174 bifunctional 5,10-met 45.8 63 0.0014 35.5 7.4 67 559-625 20-87 (295)
45 PRK14188 bifunctional 5,10-met 45.6 67 0.0015 35.3 7.6 68 558-625 20-88 (296)
46 PRK14168 bifunctional 5,10-met 44.8 61 0.0013 35.6 7.1 69 556-624 19-88 (297)
47 PRK14192 bifunctional 5,10-met 44.3 66 0.0014 35.1 7.3 76 558-633 21-99 (283)
48 PRK14169 bifunctional 5,10-met 44.1 69 0.0015 34.9 7.3 67 557-624 18-85 (282)
49 PRK14180 bifunctional 5,10-met 43.6 69 0.0015 34.9 7.2 66 559-624 20-86 (282)
50 PRK14179 bifunctional 5,10-met 43.0 78 0.0017 34.6 7.5 69 557-625 19-88 (284)
51 PRK14166 bifunctional 5,10-met 42.5 70 0.0015 34.9 7.1 65 559-624 20-85 (282)
52 PRK14193 bifunctional 5,10-met 42.4 72 0.0016 34.8 7.1 56 570-625 32-88 (284)
53 PRK14172 bifunctional 5,10-met 41.6 78 0.0017 34.4 7.2 70 556-625 18-88 (278)
54 PRK14191 bifunctional 5,10-met 41.6 82 0.0018 34.4 7.4 68 558-625 19-87 (285)
55 PRK14194 bifunctional 5,10-met 41.1 79 0.0017 34.8 7.3 65 559-624 23-88 (301)
56 PRK14190 bifunctional 5,10-met 41.0 78 0.0017 34.6 7.1 67 558-625 21-88 (284)
57 PRK14668 uvrC excinuclease ABC 38.5 1.9E+02 0.0041 35.0 10.5 105 647-786 374-484 (577)
58 PRK14173 bifunctional 5,10-met 36.7 96 0.0021 33.9 7.0 57 569-625 28-85 (287)
59 PRK14170 bifunctional 5,10-met 36.6 98 0.0021 33.8 7.0 64 560-624 22-86 (284)
60 PRK14181 bifunctional 5,10-met 35.1 1.1E+02 0.0023 33.6 7.0 56 569-624 25-81 (287)
61 KOG2488 Acetyltransferase (GNA 35.1 52 0.0011 33.4 4.2 43 68-114 107-149 (202)
62 PRK14182 bifunctional 5,10-met 34.0 1.1E+02 0.0024 33.3 6.9 55 570-624 30-85 (282)
63 COG0190 FolD 5,10-methylene-te 33.9 1.1E+02 0.0023 33.3 6.7 67 558-624 18-85 (283)
64 PRK14167 bifunctional 5,10-met 33.8 1.2E+02 0.0025 33.4 7.1 65 560-625 22-87 (297)
65 PRK14178 bifunctional 5,10-met 33.5 1.3E+02 0.0029 32.7 7.4 58 568-625 24-82 (279)
66 COG0322 UvrC Nuclease subunit 32.8 3.2E+02 0.0069 33.1 11.1 107 647-786 378-486 (581)
67 PRK14189 bifunctional 5,10-met 32.5 1.4E+02 0.003 32.6 7.4 65 559-624 22-87 (285)
68 PRK14175 bifunctional 5,10-met 31.2 1.3E+02 0.0028 33.0 6.9 55 570-624 32-87 (286)
69 KOG1924 RhoA GTPase effector D 30.1 85 0.0018 38.3 5.5 10 105-114 657-666 (1102)
70 PRK00766 hypothetical protein; 28.5 95 0.0021 31.9 5.0 35 835-876 152-186 (194)
71 PF02772 S-AdoMet_synt_M: S-ad 23.4 62 0.0013 30.5 2.4 26 851-876 12-37 (120)
72 COG5178 PRP8 U5 snRNP spliceos 22.1 73 0.0016 40.4 3.2 37 15-63 2-38 (2365)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=2.4e-178 Score=1617.32 Aligned_cols=853 Identities=83% Similarity=1.319 Sum_probs=765.9
Q ss_pred CCCCCCCCCCCCCCCcCcccccccccccccccccCCCCCCCCCCEEEEEeeEEEEEeccccceEEEEEeeeecCCCCCCC
Q 002802 19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD 98 (879)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rpg~Gt~G~~i~l~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~ 98 (879)
+++||++|.+|+++++...+..+ ....+.+.+++|||||+.|++|.|+||||+|.+..++..+|||+|+|+++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~ 80 (900)
T PLN03202 2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD 80 (900)
T ss_pred CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence 57899999999999988765322 22466668899999999999999999999999766677899999999876556777
Q ss_pred CchhHHHHHHHHHHHhhhhcCCCceeeeCCceeeecCCCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccC
Q 002802 99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR 178 (879)
Q Consensus 99 ~k~~~r~i~~~l~~~~~~~~~~~~~ayDG~k~lys~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (879)
+++++|+|++++++++...+.|..+||||+++|||+++||.+..++.|+++++...++..+++|+++++|.+++.+|.++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (900)
T PLN03202 81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR 160 (900)
T ss_pred chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence 78899999999998876667777899999999999999998777888888764333333456677777887777777777
Q ss_pred CCCCCeEEEEEEEeeeechHHHHHHHcCCCCcChHHHHHHHHHHHhhhhhhcCceeccccccCCCCCCcccCCCCEEEee
Q 002802 179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR 258 (879)
Q Consensus 179 ~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~aiq~Ldiilr~~~~~~~~~~vg~~fF~~~~~~~~~lg~G~e~~~ 258 (879)
..+.+.|+|+|+++++|++.+|.+||.|...+...++||+||+|||+.++..+++.+|++||.++.....+|++|+|+|+
T Consensus 161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~ 240 (900)
T PLN03202 161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR 240 (900)
T ss_pred cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence 77899999999999999999999999998777889999999999999998777888999999876555668999999999
Q ss_pred cceEEEEEeCCceeEeEecccceeecCchHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeeCCceEEEeecCccccc
Q 002802 259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK 338 (879)
Q Consensus 259 Gf~~Svr~~~~gl~LniDvs~~~f~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~~~~~~r~~kI~gls~~~~~ 338 (879)
||++|||+++++|+||+|+++++|+++++|+|+|.+..+.+++...+|.+++++|+|++|.++|+++.|+|.||++.+++
T Consensus 241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~ 320 (900)
T PLN03202 241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK 320 (900)
T ss_pred eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence 99999999999999999999999999999999999876665555567889999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCccceeeeHHHHHHhhcCCcccCCC-CCCeeecCCCCCCceeeccceEEcCCccccccCCHHHH
Q 002802 339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSG-DLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQR 417 (879)
Q Consensus 339 ~~~F~~~~~~~~~~~~~~~~~~iTV~eYF~~~Y~i~L~y~p-~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~Ls~~q~ 417 (879)
+.+|.++++++ ..+++.+++|||+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|||+++++|++.|+
T Consensus 321 ~~~F~~~~~~~--~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~ 397 (900)
T PLN03202 321 EQTFSLKQRNG--NGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQR 397 (900)
T ss_pred ceEEEcccCCc--ccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHH
Confidence 99998765331 01122246899999999999999999 6 99999999998999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhccCCCcccccceeEEeecceeeeeeEEcCCCceecCCCcccCCCCCccccCCceee
Q 002802 418 ASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497 (879)
Q Consensus 418 ~~mi~~~~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~~~~f~ 497 (879)
++||++|+.+|.+|.+.|.++++.++++.+++|++|||+|+++|++|+||||++|+|.||++....|++|+||+++++|+
T Consensus 398 ~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~ 477 (900)
T PLN03202 398 SSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477 (900)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEec
Confidence 99999999999999999999999999988999999999999999999999999999999987767789999999999999
Q ss_pred cccccceEEEEEeCCchhHHHHHHHHHHHHhhcCcccCCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEE
Q 002802 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCL 577 (879)
Q Consensus 498 ~p~~i~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~vl~i 577 (879)
+|+++++|++++|+.++++.+|++.|.+.|+.+||.+..|..+...++++.....+.+++.+++.++++++..++|||||
T Consensus 478 ~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vI 557 (900)
T PLN03202 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCI 557 (900)
T ss_pred CCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEE
Confidence 99999999999998767899999999999999999999886554444333323345679999999998876679999999
Q ss_pred cCCCCCCcchHHHHHHhhcccCceeeeeeccccchhHHHHHHHHHHhccCCccccccccCCCCCCcccCCCEEEEEEEee
Q 002802 578 LPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVS 657 (879)
Q Consensus 578 lp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVs 657 (879)
||++++.++|+.||++||++.||+||||..++.++||++||+||||+||||+||.|+.+....+|++.+.+|||||+||+
T Consensus 558 lp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVt 637 (900)
T PLN03202 558 LPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVS 637 (900)
T ss_pred EcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEee
Confidence 99745789999999999999999999998777899999999999999999999999876555688888889999999999
Q ss_pred cCCCCCCCCCeEEEEEEecCCCccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 002802 658 HGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFR 737 (879)
Q Consensus 658 H~~~~~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyR 737 (879)
||++|+.+.|||||+|||+|++.+++|++.+++|.+++|+|++|+....++.+++|+.++|+.||+++++.+|++|||||
T Consensus 638 Hp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyR 717 (900)
T PLN03202 638 HGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR 717 (900)
T ss_pred cCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEe
Confidence 99998756799999999999867999999999999999999998765555557889999999999987789999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeecCCCCCCCCCceEeecccccCcccceEecccc
Q 002802 738 DGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHA 817 (879)
Q Consensus 738 DGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~~N~~pGTVVD~~It~p~~~dFyL~sh~ 817 (879)
||||||||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+..+||+||||||++||||..||||||||.
T Consensus 718 DGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~ 797 (900)
T PLN03202 718 DGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHA 797 (900)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEeccc
Confidence 99999999999999999999999999989999999999999999999998777999999999999999999999999999
Q ss_pred CcccccCCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHh
Q 002802 818 GMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLAS 875 (879)
Q Consensus 818 ~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~ 875 (879)
++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|.+
T Consensus 798 ~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r 855 (900)
T PLN03202 798 GMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQ 855 (900)
T ss_pred ccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-146 Score=1321.35 Aligned_cols=763 Identities=41% Similarity=0.646 Sum_probs=670.2
Q ss_pred cccccCCCCCCCCCCEEEEEeeEEEEEeccccce-EEEEEeeeecCCCCCCCCchhHH-HHHHHHHHHh-hhhcCCCcee
Q 002802 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGH-FYHYSVSVSYEDGRPVDGKGAGR-KVIDRVQETY-NAELDGKDFA 124 (879)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~l~tN~f~v~~~~~~~~-~y~Y~V~i~~~~~~~v~~k~~~r-~i~~~l~~~~-~~~~~~~~~a 124 (879)
...++.|||.|+.|+.|.|.||||.++++.++.. ++||+|.+.++ ..++..++ .+++.+.... ...+.+..++
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNE----HGRRKVQCLRFFLDKVKNPELFELKSGGPA 117 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCC----CCchHHHHHHHHHHHHhccccccccCCccc
Confidence 4688899999999999999999999988766665 99999999654 34455554 4544444333 2346677778
Q ss_pred eeCCceeeecCCCCC--CcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCCeEEEEEEEeeeechHHHHH
Q 002802 125 YDGEKSLFTVGPLPR--NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIAN 202 (879)
Q Consensus 125 yDG~k~lys~~~Lp~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~ 202 (879)
|||+++|||..+|+. ...+|.+..++. ...|++.|++++.+.+..+..
T Consensus 118 YDg~~~lyt~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ik~~~~~~~~~~~~ 167 (876)
T KOG1041|consen 118 YDGQKTLYTKLELPEGVVTLDFDVISPKE------------------------------WKKFKVSIKKVSEVVLTKLNG 167 (876)
T ss_pred ccCCceeEeccccccccceEEEEecCCCC------------------------------CcceEEEEEecccccccCccc
Confidence 999999999888884 333444433211 112999999999999999999
Q ss_pred HHcCCCCcChHHHHHHHHHHHhhhhhhcCceeccccccCCCCCCcccCCCCEEEeecceEEEEEeCCceeEeEeccccee
Q 002802 203 ALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 282 (879)
Q Consensus 203 ~l~g~~~~~~~~aiq~Ldiilr~~~~~~~~~~vg~~fF~~~~~~~~~lg~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f 282 (879)
++.+.....+.+++|+||++|++.+...++..++++||.........+++|.|+|.||++|+|+++++++||+|+++++|
T Consensus 168 ~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F 247 (876)
T KOG1041|consen 168 FIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAF 247 (876)
T ss_pred cccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeee
Confidence 99888777889999999999999999888999999999874334445899999999999999999999999999999999
Q ss_pred ecCchHHHHHHHhcCCCC-CCchhHHH-HHHHhcCcEEEEee--CCceEEEeecCcccccccccccccCCCCCCCCCccc
Q 002802 283 IQPGPVVDFLIANQNVRD-PFSIDWAK-AKRTLKNLRIKTIT--SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (879)
Q Consensus 283 ~~~~~l~d~l~~~~~~~~-~~~~~~~~-~~~~Lkgl~V~~~~--~~r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (879)
+++.+|++++......++ +...+|.. +++.||||+|+++| .+|.|+|.+++..+|.+++|+++..+ +
T Consensus 248 ~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~---------~ 318 (876)
T KOG1041|consen 248 YKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK---------G 318 (876)
T ss_pred ecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC---------c
Confidence 999999999998776553 33333333 89999999999999 45899999999999999999977532 3
Q ss_pred eeeeHHHHHHhhcCCcccCCCCCCeeecCCCCCCceeeccceEEcCCccccc-cCCHHHHHHHHHHhcCChHHHHHHHHH
Q 002802 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK-ALTNLQRASLVEKSRQKPQERMSVLSN 437 (879)
Q Consensus 359 ~~iTV~eYF~~~Y~i~L~y~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~-~Ls~~q~~~mi~~~~~~P~eR~~~i~~ 437 (879)
.++||+|||+++||++|+| |+||||++|+.++++|||||||.|++|||+.+ +|++.|+++|++.+++.|++|++.|..
T Consensus 319 ~~~tV~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~ 397 (876)
T KOG1041|consen 319 REITVADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKK 397 (876)
T ss_pred eEEeHHHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 6999999999999999999 99999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhhhccCCCcccccceeEEeecceeeeeeEEcCCCceecCCC-cccCCCCCccccCCceeecccccceEEEEEeCCchhH
Q 002802 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDI 516 (879)
Q Consensus 438 ~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~-~~~~~~~g~Wn~~~~~f~~p~~i~~W~vv~~~~~~~~ 516 (879)
+++..++..+++|++|||.|.++|+.|+||+|+||.|.|+++ ....|.+|.|++++++|+.|+.+..|+|++|+..++.
T Consensus 398 ~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~ 477 (876)
T KOG1041|consen 398 VLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETL 477 (876)
T ss_pred HHHHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccc
Confidence 999998888999999999999999999999999999999988 3467789999999999999999999999999877533
Q ss_pred --HHHHHHHHHHHhhcCcccCCCcceeccCccccCCCchHHHHHHHHHHHhhCC--CCCeEEEEEcCCCCCCcchHHHHH
Q 002802 517 --RSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLP--GAPQFLLCLLPERKNSDLYGPWKR 592 (879)
Q Consensus 517 --~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~~~~~~~--~~~~~vl~ilp~~~~~~~Y~~iK~ 592 (879)
+.|+++|+++|+..||.|..|. . .. ..+.+++.++..++...+ ..+++++||+++ ++.++|+.||+
T Consensus 478 ~~~~f~~~L~~~c~~~Gm~i~~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~ 547 (876)
T KOG1041|consen 478 RQKQFVDELIKICKDKGMEIKRPR-K-WA-------PTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKY 547 (876)
T ss_pred cHHHHHHHHHHHHHHcCccccccc-c-cC-------cccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHH
Confidence 6899999999999999997633 2 11 122567777777666543 458999999998 88999999999
Q ss_pred HhhcccCceeeeeecc---ccchhHHHHHHHHHHhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCC--CC
Q 002802 593 KNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD--IP 667 (879)
Q Consensus 593 ~~~~~~gV~TQci~~~---~~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~--~p 667 (879)
+++...||+|||+... +..+||++||+||||+||||+|+.+..+.+...| ....+|||||+|||||++|... .|
T Consensus 548 ~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~P 626 (876)
T KOG1041|consen 548 IEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNP 626 (876)
T ss_pred HHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCc
Confidence 9999999999999975 4568999999999999999999988876544444 4568999999999999998765 59
Q ss_pred eEEEEEEecCCCccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHH
Q 002802 668 SIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQ 747 (879)
Q Consensus 668 SiaavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsegq~~~ 747 (879)
||||||+|+|| ..++|.+.+++|.+++|+|+++ ++|++++|.+|++.+ +.+|++|||||||||||||.+
T Consensus 627 Siagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~---------~~~~~~~l~~f~~~t-~~~P~~IIiyRdGvSEgqf~~ 695 (876)
T KOG1041|consen 627 SIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL---------GEMIRELLRSFRKST-RKLPDRIVIYRDGVSEGQFSM 695 (876)
T ss_pred cEEEEEecccc-cchhhcceEEEecCChhhhcch---------HHHHHHHHHHHHHhc-cCCCceEEEEecCCccchHHH
Confidence 99999999999 8899999999999999999982 469999999998875 569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeecCCCC-------CCCCCceEeecccccCcccceEeccccCcc
Q 002802 748 VLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP-------DNVPPGTVVDNKVCHPRNYDFYLCAHAGMI 820 (879)
Q Consensus 748 V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~-------~N~~pGTVVD~~It~p~~~dFyL~sh~~~q 820 (879)
|+++|+.+|++||..+.++|.|+|||||||||||||||+.+.. .|||||||||+.||||.++|||||||.++|
T Consensus 696 vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~q 775 (876)
T KOG1041|consen 696 VLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQ 775 (876)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCccc
Confidence 9999999999999999999999999999999999999997654 599999999999999999999999999999
Q ss_pred cccCCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHhh
Q 002802 821 GTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 821 GTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~~ 876 (879)
||||||||||||||++|++|+||+|||.|||+|+|||++||||+|+||||++|++-
T Consensus 776 GTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rg 831 (876)
T KOG1041|consen 776 GTSKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRG 831 (876)
T ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999874
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.8e-127 Score=1049.58 Aligned_cols=705 Identities=26% Similarity=0.443 Sum_probs=616.5
Q ss_pred CCCCCCCEEEEEeeEEEEEeccccceEEEEEeeeecCCCCCCCCchhHHHHHHHHHHHhhhhcCCCceeeeCCceeeecC
Q 002802 56 GLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVG 135 (879)
Q Consensus 56 g~Gt~G~~i~l~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~~~~~ayDG~k~lys~~ 135 (879)
..|+.|.+++|.||||++. ..+++.+|||+|++ .|.+++++++++++..+ +++-|+.++|||. +||..+
T Consensus 87 KtGssG~pv~l~tN~f~l~-t~p~w~iyqYhVef----~P~ves~rlR~~~L~~h-----~~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLM-TRPDWSIYQYHVEF----EPDVESRRLREALLYNH-----TDLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeec-cCCCcEEEEEEEee----ccccccHHHHHHHHHHh-----Hhhhccceeecce-eehhhH
Confidence 4699999999999999987 46899999999999 67889998888887643 4456889999997 999999
Q ss_pred CCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCCeEEEEEEEeeeechHHHHHHHcCCCCcChHHH
Q 002802 136 PLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEA 215 (879)
Q Consensus 136 ~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~a 215 (879)
++.++..+.. ++ +.++..++|+|++++.++.. ..+.
T Consensus 156 k~eq~~tel~-------~k------------------------s~~ge~i~I~ik~~~~~~~t-------------~p~~ 191 (845)
T KOG1042|consen 156 KFEQKQTELV-------SK------------------------SRDGELIKITIKLTNELPST-------------DPQC 191 (845)
T ss_pred HHhhhhheee-------cc------------------------cCCCceEEEEEEEeccccCC-------------ChhH
Confidence 9987654321 10 23567899999999988762 4589
Q ss_pred HHHHHHHHhhhhhhcCceeccccccCCCCCCcccC-CCCEEEeecceEEEEEeCCceeEeEecccceeecCchHHHHHHH
Q 002802 216 FRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADV-GGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (879)
Q Consensus 216 iq~Ldiilr~~~~~~~~~~vg~~fF~~~~~~~~~l-g~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~~~~~l~d~l~~ 294 (879)
||++|+|||..+...+..++||+||++..+. ++ ...+++|+||.+|||..+..++|+.|++|++ .+..+|.|+|.+
T Consensus 192 iqv~NlI~RR~~k~L~L~qigRnyynp~~~i--~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~ 268 (845)
T KOG1042|consen 192 IQVFNLILRRSMKGLNLTQIGRNYYDPRAKI--EIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRS 268 (845)
T ss_pred HHHHHHHHHHHHhhccHHHhhhccCCCCccc--ccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHH
Confidence 9999999999988888889999999986542 33 3589999999999999999999999999999 678899999988
Q ss_pred hcCCCCCCchhHHHHHHHhcCcEEEEeeCCceEEEeecCcccccccccccccCCCCCCCCCccceeeeHHHHHHhhcCCc
Q 002802 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID 374 (879)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~Lkgl~V~~~~~~r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYF~~~Y~i~ 374 (879)
+++. +. ...++.++++.|+.|.|.|||+.|+|+++++...+..+|..++ .+||+.|||+++|||+
T Consensus 269 ~~~~--~~-~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d------------geIs~veYyk~qYni~ 333 (845)
T KOG1042|consen 269 CQHN--TQ-RFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD------------GEISFVEYYKKQYNIE 333 (845)
T ss_pred HhhC--HH-HHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC------------ceeeHhHHHHHhcCeE
Confidence 7642 22 2456899999999999999999999999999999999997654 3899999999999999
Q ss_pred ccCCCCCCeeecC-C-------CCCCceeeccceEEcCCccccccCCHHHHH------HHHHHhcCChHHHHHHHHHHhh
Q 002802 375 LRYSGDLPCINVG-K-------PKRPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQKPQERMSVLSNALK 440 (879)
Q Consensus 375 L~y~p~lP~v~vg-~-------~~~~~ylP~Elc~i~~~Qr~~~~Ls~~q~~------~mi~~~~~~P~eR~~~i~~~~~ 440 (879)
|++ -+||++... + ..+..++.||||.++| |++++|+ +|.++++..|++|.+.+..++.
T Consensus 334 I~d-l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~ 405 (845)
T KOG1042|consen 334 ITD-LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLID 405 (845)
T ss_pred Eee-CCcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 998 999999752 2 2235899999999997 7888887 6788999999999999998888
Q ss_pred hccCC--CcccccceeEEeecceeeeeeEEcCCCceecCCCcc-cCCCCCccc--cCCceeecccccceEEEEEeCCch-
Q 002802 441 LSKYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED-FSPRNGRWN--FNNKKLVQPTKIERWAVVNFSARC- 514 (879)
Q Consensus 441 ~~~~~--~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~-~~~~~g~Wn--~~~~~f~~p~~i~~W~vv~~~~~~- 514 (879)
.+.-+ ....|+.|||+++.+.++|+||||++.+|.+|+++. ..+....|. ++.-+++....+++|++++.....
T Consensus 406 ~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~ 485 (845)
T KOG1042|consen 406 RLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNS 485 (845)
T ss_pred HHhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHH
Confidence 87543 336799999999999999999999999999998653 334557896 777788888999999999876543
Q ss_pred hHHHHHHHHHHHHhhcCcccCCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHh
Q 002802 515 DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKN 594 (879)
Q Consensus 515 ~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~ 594 (879)
.++.|++.|.+.+..+||+|..|..+... +++.+.+++.|+.....++++|+||+|+ .+.+.|+.|||++
T Consensus 486 ~a~~fi~~l~r~a~~mgm~i~~P~~v~i~---------ddr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~ 555 (845)
T KOG1042|consen 486 EAQEFINMLRRVASSMGMQIREPICVEIK---------DDRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYL 555 (845)
T ss_pred HHHHHHHHHHHhccccceecCCceEEEeC---------CCChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhhe
Confidence 68999999999999999999999876543 2456778889988887889999999998 7889999999999
Q ss_pred hcccCceeeeeeccccchh-----HHHHHHHHHHhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCCCCeE
Q 002802 595 LADFGIVTQCMAPMRVNDQ-----YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSI 669 (879)
Q Consensus 595 ~~~~gV~TQci~~~~~~~q-----~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSi 669 (879)
+++.+||||||..++++.+ ..+.|+|||||||||..|.++ ||+ +.+||||+||+|.+.. ...|+
T Consensus 556 cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsv 624 (845)
T KOG1042|consen 556 CVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSV 624 (845)
T ss_pred eccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceE
Confidence 9999999999998765432 358999999999999999885 565 7899999999998753 45799
Q ss_pred EEEEEecCCCccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHH
Q 002802 670 AAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVL 749 (879)
Q Consensus 670 aavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~ 749 (879)
+|+|||+| ..+++|++.+..|...+|+.+.|. -++..+|++||..| ..+|+||||||||||+||+.+|.
T Consensus 625 ga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L~---------~~~~~ALr~y~~~n-~~LPsRIi~YRDGVgDGQLk~l~ 693 (845)
T KOG1042|consen 625 GAFVASMN-NDFTRWFSRVIEQENGQELADNLK---------VFLAKALRQYYEVN-RTLPSRIIVYRDGVGDGQLKTLV 693 (845)
T ss_pred EEEEEeec-cchhhhhhheecccCHHHHHHHHH---------HHHHHHHHHHHHhc-ccCCceEEEEecCCCCcccceee
Confidence 99999999 489999999999999999998875 48899999999875 69999999999999999999999
Q ss_pred HHHHH----HHHHHHHHhcCCCCCcEEEEEEeecccceeecCCCC--CCCCCceEeecccccCcccceEeccccCccccc
Q 002802 750 NVELN----QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP--DNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTS 823 (879)
Q Consensus 750 ~~E~~----~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~--~N~~pGTVVD~~It~p~~~dFyL~sh~~~qGTa 823 (879)
+.|++ ++.+.+++++.+++|+++||||+||.++|||..... .||+||||||+.||.|.++||||+||+..|||.
T Consensus 694 n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtv 773 (845)
T KOG1042|consen 694 NYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTV 773 (845)
T ss_pred eeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccceeeeEeehhhhhcCCc
Confidence 99999 777778888888999999999999999999987643 799999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHH
Q 002802 824 RPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVL 873 (879)
Q Consensus 824 rPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~ 873 (879)
.||||.||||++++++|.+|+|||+|||+|+||.++|++||||+|||++|
T Consensus 774 sPTsYnvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLA 823 (845)
T KOG1042|consen 774 SPTSYNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLA 823 (845)
T ss_pred CCceEEEEecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.6e-98 Score=856.71 Aligned_cols=402 Identities=48% Similarity=0.807 Sum_probs=362.4
Q ss_pred ccccceeEEeecceeeeeeEEcCCCceecCCC-cccCCCCCccccCCceeecccccceEEEEEeCCc-------hhHHHH
Q 002802 448 PMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-------CDIRSL 519 (879)
Q Consensus 448 ~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~-~~~~~~~g~Wn~~~~~f~~p~~i~~W~vv~~~~~-------~~~~~f 519 (879)
++|++|||+|+++|++|+||+|+||+|.|+++ ....+.+|+||+++++|++++++++|++++++.. ++++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 4556789999999999999999999999998753 258899
Q ss_pred HHHHHHHHhhcCcccCCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccC
Q 002802 520 VRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFG 599 (879)
Q Consensus 520 ~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~g 599 (879)
++.|.+.|+.+||.+. . ... .....++.+++.+++.....++|||||||+ ++.++|+.||++|+.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~-~-~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT-T-AIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc-c-ccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999986 1 111 113467788888887665578999999998 678999999999999999
Q ss_pred ceeeeeeccc----cchhHHHHHHHHHHhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCC-CCCCeEEEEEE
Q 002802 600 IVTQCMAPMR----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGH-SDIPSIAAVVS 674 (879)
Q Consensus 600 V~TQci~~~~----~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~-~~~pSiaavV~ 674 (879)
|+||||...+ .++||+.||+||||+||||+||.++... .+++...+|||||+||+||+++. ...|||||+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999754 4789999999999999999999997532 22345689999999999999875 45799999999
Q ss_pred ecCCCccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHHHHH
Q 002802 675 SRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELN 754 (879)
Q Consensus 675 S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~E~~ 754 (879)
|+|+ .+++|.+.+++|.+++|+|++|. +|++++|+.|++. +|.+|++|||||||||||||.+|+++|++
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l~---------~~~~~~l~~~~~~-~~~~P~~IiiyRDGvsegq~~~v~~~E~~ 294 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDLE---------SMVRELLRAFKKA-TGKLPERIIYYRDGVSEGQFAQVLNEELP 294 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHHH---------HHHHHHHHHHHHH-hCCCCceEEEEEcCcCHHHHHHHHHHHHH
Confidence 9996 79999999999999999998864 6999999998776 56899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEeecccceeecCCC------CCCCCCceEeecccccCcccceEeccccCcccccCCceE
Q 002802 755 QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGS------PDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHY 828 (879)
Q Consensus 755 ~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~------~~N~~pGTVVD~~It~p~~~dFyL~sh~~~qGTarPthY 828 (879)
+|++||.+++.+|+|+||||||+||||+|||+.+. .+||+||||||++||+|..+|||||||.++|||||||||
T Consensus 295 ~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y 374 (426)
T cd04657 295 AIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHY 374 (426)
T ss_pred HHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceE
Confidence 99999999988899999999999999999998643 479999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHh
Q 002802 829 HVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLAS 875 (879)
Q Consensus 829 ~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~ 875 (879)
+||+||+++++|+||+|||+|||+|+|||++||+|+|+||||++|++
T Consensus 375 ~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r 421 (426)
T cd04657 375 HVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAAR 421 (426)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=8.7e-94 Score=825.62 Aligned_cols=430 Identities=29% Similarity=0.476 Sum_probs=384.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhhccCCCc--ccccceeEEeecceeeeeeEEcCCCceecCCCcccCCCCCccccC--
Q 002802 417 RASLVEKSRQKPQERMSVLSNALKLSKYDNE--PMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFN-- 492 (879)
Q Consensus 417 ~~~mi~~~~~~P~eR~~~i~~~~~~~~~~~~--~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~-- 492 (879)
..+|++.++.+|+||++.|.++++.++++.+ ++|++|||+|++++++|+||+|+||.|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4689999999999999999999999877665 589999999999999999999999999999876556778999864
Q ss_pred CceeecccccceEEEEEeCCch-hHHHHHHHHHHHHhhcCcccCCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCC
Q 002802 493 NKKLVQPTKIERWAVVNFSARC-DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAP 571 (879)
Q Consensus 493 ~~~f~~p~~i~~W~vv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~ 571 (879)
+..|+.+.++++|+++++..+. ++..|++.|.+.++.+||.+.+|..+...+ .+++.+++.+.+.....+
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 5578999999999999986433 699999999999999999999887553321 235567777777665679
Q ss_pred eEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeecccc-----chhHHHHHHHHHHhccCCccccccccCCCCCCcccC
Q 002802 572 QFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV-----NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSK 646 (879)
Q Consensus 572 ~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~~-----~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~ 646 (879)
+|+|||+|+ ++.++|..||++|+.+.||+||||...++ ..+++.||++|||+||||+||.++.. + ...
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~-----~-~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP-----P-FIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----C-CCC
Confidence 999999998 66899999999999999999999997543 34688999999999999999998642 1 235
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCCCccceEEEEEEeccccccc-cccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEM-IDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.+|||||+||+|++++ ..||+||+|||+|. .+++|++.++.|..++|+ +++| ++|++++|..|++.+
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l---------~~~~~~~l~~y~~~~ 294 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSL---------GKSMKKALKAYKKEN 294 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHH---------HHHHHHHHHHHHHHh
Confidence 7899999999999873 46999999999995 899999999999999998 6665 469999999988764
Q ss_pred CCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeecCCCC--CCCCCceEeeccc
Q 002802 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP--DNVPPGTVVDNKV 803 (879)
Q Consensus 726 ~~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~--~N~~pGTVVD~~I 803 (879)
|.+|++|||||||||||||.+|+++|+++|++||..++.+|+|+||||+|+||||+|||+.+.. +||+||||||++|
T Consensus 295 -~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~i 373 (448)
T cd04658 295 -KKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEI 373 (448)
T ss_pred -CCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccc
Confidence 7999999999999999999999999999999999998888999999999999999999997654 5999999999999
Q ss_pred ccCcccceEeccccCcccccCCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHh
Q 002802 804 CHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLAS 875 (879)
Q Consensus 804 t~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~ 875 (879)
|||..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||+|||+|+|+||||++|..
T Consensus 374 t~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~ 445 (448)
T cd04658 374 TKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFL 445 (448)
T ss_pred cCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=6.2e-85 Score=738.74 Aligned_cols=377 Identities=30% Similarity=0.438 Sum_probs=326.1
Q ss_pred eeeeeeEEcCCCceecCCCcccCCCCCccccCCceeeccccc-ceEEEEEeCCchhHHHHHHHHHHHHhhcCcccCC-Cc
Q 002802 461 FAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKI-ERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQ-PF 538 (879)
Q Consensus 461 ~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~~~~f~~p~~i-~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~-p~ 538 (879)
+++|+||+|+||.|.||++ |++++++|..|+.+ ++|+++++... ..++|++.|.+.++++||.+.. |.
T Consensus 2 ~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~~-~~~~f~~~l~~~~~~~G~~~~~~~~ 71 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRNE-EVDDLVKRLADACRQLGMKIKEIPI 71 (393)
T ss_pred ceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEcccH-HHHHHHHHHHHHHHhCCCccCCCCC
Confidence 6789999999999999874 99999999999999 99999988643 4678999999999999999987 54
Q ss_pred ceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeeccc-----cchh
Q 002802 539 DVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQ 613 (879)
Q Consensus 539 ~v~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~-----~~~q 613 (879)
....+..+ ...+.++..++++. ...++|+|||+|+ +++++|+.||++|+.+ ||+||||...+ .+.+
T Consensus 72 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~ 142 (393)
T cd02826 72 VSWIEDLN----NSFKDLKSVFKNAI---KAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQ 142 (393)
T ss_pred cceeeccc----ccHHHHHHHHHHHh---hcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHH
Confidence 43222110 01233444444433 3468999999998 7789999999999988 99999999743 4578
Q ss_pred HHHHHHHHHHhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCC-CCCCCeEEEEEEecCCCccceEEEEEEecc
Q 002802 614 YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG-HSDIPSIAAVVSSRHWPLISRYRAAVRTQS 692 (879)
Q Consensus 614 ~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~-~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~ 692 (879)
+++||++|||+||||+||.++... +...+|||||+||+|++++ ....||++|+|+|+|. . +.|.+.++.|.
T Consensus 143 ~~~Ni~lkin~KlGG~~~~l~~~~------~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~~~~~~~ 214 (393)
T cd02826 143 TLDNLLRKVNSKLGGINYILDSPV------KLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGGFLYVQP 214 (393)
T ss_pred HHHHHHHHHhhhhCCeeeEeccCC------CCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccceEEEEec
Confidence 999999999999999999996421 2347899999999999875 3357999999999985 3 44445577888
Q ss_pred ccccccccccccccCcchHHHHHHHHHHHHHHhCCC-CCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcE
Q 002802 693 PKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKR-KPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKF 771 (879)
Q Consensus 693 ~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~-~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pki 771 (879)
.++|++++| ++|++++|..|+++ ++. +|++|||||||||||||++|+++|+++|++||. ++.+|+|+|
T Consensus 215 ~~~~~~~~l---------~~~~~~~L~~y~~~-~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~i 283 (393)
T cd02826 215 SREVKLQDL---------GEVIKKCLDGFKKS-TGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKL 283 (393)
T ss_pred CccchHHHH---------HHHHHHHHHHHHHH-cCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCE
Confidence 888887765 46999999998775 567 999999999999999999999999999999998 778899999
Q ss_pred EEEEEeecccceeecCCCC---CCCCCceEeecccccCcccceEeccccCcccccCCceEEEEecCCCCCHHHHHHHHHH
Q 002802 772 AVIVAQKNHHTKFFQSGSP---DNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHS 848 (879)
Q Consensus 772 t~Ivv~KrhhtRff~~~~~---~N~~pGTVVD~~It~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~ 848 (879)
|||+|+||||+|||+.+.. .||+||||||++||||..+||||+||.++|||+|||||+||+||+++++|+||+|||+
T Consensus 284 t~Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~ 363 (393)
T cd02826 284 VIIVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYI 363 (393)
T ss_pred EEEEEeccccceeccCCCCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997643 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCcchhhHHHHHHHHHHh
Q 002802 849 LSYVYQRSTTAISVGNLKNLMLVVLAS 875 (879)
Q Consensus 849 Lc~~y~r~t~svsipaP~yYA~~~~~~ 875 (879)
|||+|+|||++||+|+|+||||++|++
T Consensus 364 lc~~y~~~~~~vslP~p~~yA~~~a~r 390 (393)
T cd02826 364 LCLTHQNVYSPISLPAPLYYAHKLAKR 390 (393)
T ss_pred HhhcccccCCCcccChHHHHHHHHHHh
Confidence 999999999999999999999999986
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.8e-69 Score=594.71 Aligned_cols=287 Identities=45% Similarity=0.679 Sum_probs=252.9
Q ss_pred EEEEEcCCCCCCcchHHHHHHhhcccCceeeeeeccc---c--chhHHHHHHHHHHhccCCcc-ccccccCCCCCCcccC
Q 002802 573 FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---V--NDQYLTNVLLKINAKLGGLN-SLLAVEHSPSIPIVSK 646 (879)
Q Consensus 573 ~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~---~--~~q~~~Ni~lKiNaKLGG~n-~~l~~~~~~~~p~~~~ 646 (879)
+|+||+|+ ++.+.|..+|++++.+.||+||||..++ . ..+++.||++|||+||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 58899998 7889999999999999999999999753 2 36889999999999999996 544322 11222
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCCCccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHhC
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSG 726 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~ 726 (879)
.+|||||+||+|++++....||++|+|+|+| +..++|.+.+..|..++|++++|. ++++++|+.|++.++
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l~---------~~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNLE---------EIIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHHH---------HHHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcchh---------hHHHHHHHHHHHHcC
Confidence 6899999999999886545799999999999 489999999999999999998854 599999999887654
Q ss_pred CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeecCCCC---CCCCCceEeeccc
Q 002802 727 KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP---DNVPPGTVVDNKV 803 (879)
Q Consensus 727 ~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~---~N~~pGTVVD~~I 803 (879)
+.+|++|||||||||||||.+|+++|+++|++||+++..+|+|+|+||+|+||||+|||+.+.. .||+||||||+.|
T Consensus 145 ~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i 224 (302)
T PF02171_consen 145 KWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGI 224 (302)
T ss_dssp T-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEE
T ss_pred CCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccccccCCCCCCeeeccce
Confidence 3499999999999999999999999999999999999999999999999999999999998764 5999999999999
Q ss_pred ccCcccceEeccccCcccccCCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHh
Q 002802 804 CHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLAS 875 (879)
Q Consensus 804 t~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~ 875 (879)
|+|..+||||+||.++|||+|||||+|||||.+++.|+||+|||+|||+|+||++++|+|+|+||||++|++
T Consensus 225 ~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~ 296 (302)
T PF02171_consen 225 TSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKR 296 (302)
T ss_dssp EECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHH
T ss_pred eeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=2.7e-46 Score=425.89 Aligned_cols=283 Identities=20% Similarity=0.235 Sum_probs=220.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEEcCCCC-----CCcchHHHHHHhhcccCceeeeeecccc-----chhHHHHHHHHHHh
Q 002802 555 RVEKMFDEIQSKLPGAPQFLLCLLPERK-----NSDLYGPWKRKNLADFGIVTQCMAPMRV-----NDQYLTNVLLKINA 624 (879)
Q Consensus 555 ~ve~~~~~~~~~~~~~~~~vl~ilp~~~-----~~~~Y~~iK~~~~~~~gV~TQci~~~~~-----~~q~~~Ni~lKiNa 624 (879)
.+...++...+.....++++||++|+.. ..++|..||+++ .+.||+||||..+++ ..+++.||++|||+
T Consensus 95 ~~~~a~~~~~~~~~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~a 173 (404)
T cd04659 95 AIIEAVDLALSESSQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYA 173 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHH
Confidence 3333444433332346899999999832 278999999987 579999999997543 35679999999999
Q ss_pred ccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCCCCeEEEEEEecCCCccceEEEEEEecccccccccccccc
Q 002802 625 KLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKK 704 (879)
Q Consensus 625 KLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~ 704 (879)
|+||+||.|+.. ...+|||||+||+|+..++...+++|+|+.+ +. .. .+..+.+..+.+.+-
T Consensus 174 KlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~vf~~-~g---~g---~~~~~~~~~~~~~~~--- 235 (404)
T cd04659 174 KLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQVFDS-DG---LG---LILRGAPIEEPTEDR--- 235 (404)
T ss_pred hcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEEEcC-CC---CE---EEEecCccCCccccc---
Confidence 999999999632 2368999999999998653334555555433 32 11 112222233333210
Q ss_pred ccCcchHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccee
Q 002802 705 VSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKF 784 (879)
Q Consensus 705 ~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRf 784 (879)
..+.+.++++++|..|.+.++..+|++|||||||+. .++|+++|++||.+++ |+++||+|+|+||+||
T Consensus 236 -~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~ 303 (404)
T cd04659 236 -SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRL 303 (404)
T ss_pred -CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcce
Confidence 011355799999999877654339999999999993 6899999999999874 8999999999999999
Q ss_pred ecCCCC---CCCCCceEeecccccCcccceEeccccCc--------ccccCCceEEEEecCCCCCHHHHHHHHHHhhccc
Q 002802 785 FQSGSP---DNVPPGTVVDNKVCHPRNYDFYLCAHAGM--------IGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVY 853 (879)
Q Consensus 785 f~~~~~---~N~~pGTVVD~~It~p~~~dFyL~sh~~~--------qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y 853 (879)
|..+.. .||++|||||.. .+||||++|.+. +||+||+| |++|+...+.|+|+++||+|||+|
T Consensus 304 f~~~~~~~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~ 376 (404)
T cd04659 304 FRFGTYPNGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLN 376 (404)
T ss_pred EEecCCCCCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcC
Confidence 986544 479999999954 499999999886 99999999 788988899999999999999999
Q ss_pred cccCC-CcchhhHHHHHHHHHHh
Q 002802 854 QRSTT-AISVGNLKNLMLVVLAS 875 (879)
Q Consensus 854 ~r~t~-svsipaP~yYA~~~~~~ 875 (879)
+|++. ++++|+|+||||++|.-
T Consensus 377 ~n~~~~~~~lP~ti~YA~~~a~~ 399 (404)
T cd04659 377 WNSFQFYSRLPVTIHYADRVAKL 399 (404)
T ss_pred cCCCCCCCCcceEEeHHHHHHHH
Confidence 99998 99999999999999964
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=8.9e-23 Score=197.07 Aligned_cols=130 Identities=39% Similarity=0.587 Sum_probs=108.7
Q ss_pred chHHHHHHHhcCCCCCCchhH-HHHHHHhcCcEEEEeeCC--ceEEEeecCcccccccccccccCCCCCCCCCccceeee
Q 002802 286 GPVVDFLIANQNVRDPFSIDW-AKAKRTLKNLRIKTITSN--QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEIT 362 (879)
Q Consensus 286 ~~l~d~l~~~~~~~~~~~~~~-~~~~~~Lkgl~V~~~~~~--r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~~~iT 362 (879)
++|+|+|.+..+........+ .++++.|+|++|.++|++ +.|+|.||++.++++.+|..+. ++++|
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~-----------g~~it 69 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND-----------GKEIT 69 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT-----------SEEEE
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC-----------CceEE
Confidence 478999998777655443333 348999999999999998 9999999999999999998662 26999
Q ss_pred HHHHHHhhcCCcccCCCCCCeeecCCCCC--CceeeccceEEcCCccccccCCHHHHHHHHHHhcCC
Q 002802 363 VYDYFVNNRNIDLRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQK 427 (879)
Q Consensus 363 V~eYF~~~Y~i~L~y~p~lP~v~vg~~~~--~~ylP~Elc~i~~~Qr~~~~Ls~~q~~~mi~~~~~~ 427 (879)
|+|||+++||++|+| |+||||+++..++ ++|||||||.|+|+|++.+++.+.|++.|++.++.+
T Consensus 70 v~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 70 VAEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HHHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hHHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 999999999999999 9999999998877 999999999999999999999999999999998863
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.79 E-value=4.8e-19 Score=165.92 Aligned_cols=107 Identities=41% Similarity=0.773 Sum_probs=92.7
Q ss_pred chHHHHHHHhcCCCCC---CchhHHHHHHHhcCcEEEEeeC---CceEEEeecCcccccccccccccCCCCCCCCCccce
Q 002802 286 GPVVDFLIANQNVRDP---FSIDWAKAKRTLKNLRIKTITS---NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQEL 359 (879)
Q Consensus 286 ~~l~d~l~~~~~~~~~---~~~~~~~~~~~Lkgl~V~~~~~---~r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~~ 359 (879)
++|+|++.+..+.... ...++.+++++|+|++|.++|. +|.|+|.||+..++.+.+|..+.++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~----------~ 71 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----------K 71 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCC----------c
Confidence 6899999987765432 2346778999999999999997 6999999999999989999765421 4
Q ss_pred eeeHHHHHHhhcCCcccCCCCCCeeecCCCCCCceeeccceEEc
Q 002802 360 EITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELV 403 (879)
Q Consensus 360 ~iTV~eYF~~~Y~i~L~y~p~lP~v~vg~~~~~~ylP~Elc~i~ 403 (879)
++||+|||+++||++|+| |+||||++|+.++++|+|||||.|+
T Consensus 72 ~isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 72 EISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 899999999999999999 9999999999889999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.78 E-value=6.9e-19 Score=164.68 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=89.9
Q ss_pred CchHHHHHHHhcCCCCC----CchhHHHHHHHhcCcEEEEeeC--CceEEEeecCcccccccccccccCCCCCCCCCccc
Q 002802 285 PGPVVDFLIANQNVRDP----FSIDWAKAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (879)
Q Consensus 285 ~~~l~d~l~~~~~~~~~----~~~~~~~~~~~Lkgl~V~~~~~--~r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (879)
.+||+|++.+..+.++. ...++.++.+.|+|++|.++|+ ++.|+|.||++.+++++ |..++ +
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~-----------~ 68 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD-----------G 68 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC-----------C
Confidence 36899999887654332 2346778999999999999998 79999999999999988 75332 2
Q ss_pred eeeeHHHHHHhhcCCcccCCCCCCeeecCCC---CCCceeeccceEEc
Q 002802 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKP---KRPTYIPLELCELV 403 (879)
Q Consensus 359 ~~iTV~eYF~~~Y~i~L~y~p~lP~v~vg~~---~~~~ylP~Elc~i~ 403 (879)
.++||+|||+++||++|+| |+||||++|+. .+++|||||||.|+
T Consensus 69 ~~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 69 KEITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred CEEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 4899999999999999999 99999999987 67899999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.74 E-value=2.9e-18 Score=159.97 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=87.7
Q ss_pred hHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeeCCceEEEeecCcccccccccccccCCCCCCCCCccceeeeHHHH
Q 002802 287 PVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDY 366 (879)
Q Consensus 287 ~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~~~~~~r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eY 366 (879)
+++|++....+.. +...+++++++.|+|+.|.++|+|+.|+|.+|++.+++.++|+.+++ .++||+||
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~-----------~~~S~~~Y 70 (117)
T cd02845 3 TVLDRMHKLYRQE-TDERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDG-----------TEITFVEY 70 (117)
T ss_pred eHHHHHHHHHHhc-ccHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCC-----------CeeeHHHH
Confidence 5677776644321 11125678999999999999999999999999999999999974431 37899999
Q ss_pred HHhhcCCcccCCCCCCeeecCCCC--------CCceeeccceEEcCC
Q 002802 367 FVNNRNIDLRYSGDLPCINVGKPK--------RPTYIPLELCELVSL 405 (879)
Q Consensus 367 F~~~Y~i~L~y~p~lP~v~vg~~~--------~~~ylP~Elc~i~~~ 405 (879)
|+++||+.|+| ++|||+.++.++ +++|||||||.++|.
T Consensus 71 y~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltgl 116 (117)
T cd02845 71 YKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGL 116 (117)
T ss_pred HHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCC
Confidence 99999999999 999999997643 479999999999984
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.54 E-value=3.4e-15 Score=117.79 Aligned_cols=51 Identities=49% Similarity=0.762 Sum_probs=41.7
Q ss_pred eccccccCCCCCCcccCCCCEEEeecceEEEEEeCCceeEeEecccceeecC
Q 002802 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP 285 (879)
Q Consensus 234 ~vg~~fF~~~~~~~~~lg~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~~~ 285 (879)
.+||+||+++... .+|++|+|+|+|||+|+||+.++|+||||+++++|+++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999987544 78999999999999999999999999999999999985
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.40 E-value=3.3e-13 Score=128.69 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=70.0
Q ss_pred HHHHhcCcEEEEeeCCceEEEeecCcccccccccccccCCCCCCCCCccceeeeHHHHHHhhcCCcccCCCCCCeeecCC
Q 002802 309 AKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGK 388 (879)
Q Consensus 309 ~~~~Lkgl~V~~~~~~r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYF~~~Y~i~L~y~p~lP~v~vg~ 388 (879)
..+.|+|+.|.++|+++.|+|.|++ ..+++++|+.+++ +..+|++|||+++|||+|+| ++|||+++..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~----------~~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~ 94 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEG----------LGYATYAEYFKEKYGIVLNH-PNQPLLKGKQ 94 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCC----------CceeeHHHHHHHHhCceecc-CCcceEEEec
Confidence 4678999999999999999999999 8999999976532 13689999999999999999 9999997541
Q ss_pred --------------------CC---CCceeeccceEEcC
Q 002802 389 --------------------PK---RPTYIPLELCELVS 404 (879)
Q Consensus 389 --------------------~~---~~~ylP~Elc~i~~ 404 (879)
.+ ..++||||||.+.+
T Consensus 95 ~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 95 IFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccceecccccccccccccccccceEEEeChHHhcccc
Confidence 01 13689999999864
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=7.9e-09 Score=115.60 Aligned_cols=338 Identities=18% Similarity=0.146 Sum_probs=181.8
Q ss_pred CCCceecCC-CcccCCCCCccccCCceeecccccceEEEEE-e--CCch--hHHHHHHHHHHHHhhcC-cc--cCCCcce
Q 002802 470 PAPRLKFGN-GEDFSPRNGRWNFNNKKLVQPTKIERWAVVN-F--SARC--DIRSLVRDLIKCGEMKG-IL--IDQPFDV 540 (879)
Q Consensus 470 ~~P~i~~g~-~~~~~~~~g~Wn~~~~~f~~p~~i~~W~vv~-~--~~~~--~~~~f~~~L~~~~~~~G-~~--i~~p~~v 540 (879)
.+|.+..|+ |.+......-|++- .+..|.....|.-+. . +..- -...+.+.+....+..+ +. +.-+...
T Consensus 308 k~pdiv~g~~gktti~n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~ 385 (685)
T COG1431 308 KGPDIVIGTEGKTTIDNVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLTLH 385 (685)
T ss_pred cCCceEecccceeeEehhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhcccceee
Confidence 445665554 44322233344432 234454455565432 2 2211 36778888888877665 32 2222211
Q ss_pred eccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeeccc---cchhHHHH
Q 002802 541 FEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQYLTN 617 (879)
Q Consensus 541 ~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~---~~~q~~~N 617 (879)
... .+....+.+-.++.++ ....++..-+- ++...|+.+|+ .+.-|++|.|.-.+ .-.-+++|
T Consensus 386 ~a~----~r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~tn 451 (685)
T COG1431 386 VAG----KRPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKTN 451 (685)
T ss_pred ecc----cchhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhhhH
Confidence 100 0000011222222222 01122333333 56678999998 56679999998532 22346899
Q ss_pred HHHHHHhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEecccccc
Q 002802 618 VLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVE 696 (879)
Q Consensus 618 i~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E 696 (879)
+++|+-+|.+|+++.+-.. ...-+-|+|+||+..+-|. ..+-|++.-.+. ..+-+|...+..- .+ |
T Consensus 452 la~~~~~ktlgqpY~~r~~--------~gpvDaivGlDvsr~~~gn---~tV~gct~~f~seg~l~eyy~t~tpa-~G-E 518 (685)
T COG1431 452 LASKRYLKTLGQPYLKRNG--------LGPVDAIVGLDVSRVSEGN---WTVEGCTSCFVSEGGLEEYYHTVTPA-LG-E 518 (685)
T ss_pred HHHHHHHHhcCCceeeecc--------CCCccceeeeeeeEEeeCC---eEEeeeeEEEeccCceEEeeecccCC-cc-c
Confidence 9999999999999987421 1123689999999976432 344442211121 1233333221110 00 1
Q ss_pred ccccccccccCcchHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 002802 697 MIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVA 776 (879)
Q Consensus 697 ~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv 776 (879)
.... .+ -..|.+. + .+-..-.+|++.|||- +...|++++++.=+.++ ...+++.+
T Consensus 519 rl~~---------~g-~yle~~~-~---~gfe~~n~iV~lRDG~-------l~~~E~aavkeyg~elg----sn~ev~~i 573 (685)
T COG1431 519 RLET---------SG-RYLEKMN-W---RGFESRNLIVTLRDGK-------LVAGEIAAVKEYGGELG----SNPEVNRI 573 (685)
T ss_pred hhhh---------HH-HHHHHHH-h---hhhhccCeeEEEecCc-------cchHHHHHHHHHhhhcC----CChhhhee
Confidence 1100 00 0111111 1 1123446799999994 56778777776665553 34566666
Q ss_pred eecccceeecCCCCCCCCCceEee------cccccCcccceEeccccCcccccCCceEEEEecCCCCCHHHHHHHHHHhh
Q 002802 777 QKNHHTKFFQSGSPDNVPPGTVVD------NKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLS 850 (879)
Q Consensus 777 ~KrhhtRff~~~~~~N~~pGTVVD------~~It~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc 850 (879)
.|+ +-+||..+...- |--+- +.++.|. .....||-+|..--=..+ .+.-|-|- |.|.|+
T Consensus 574 ~kn-Np~vf~~e~~i~---g~f~~~~~s~~h~~~~~y--------npv~~gT~~pi~~r~~~g--~l~~e~i~-lv~dLT 638 (685)
T COG1431 574 LKN-NPWVFAIEGEIW---GAFVRLDGSTVHLCCSPY--------NPVRRGTPRPIALRRRDG--KLDGELIG-LVHDLT 638 (685)
T ss_pred ccc-CCeEEEecceee---eEEEecCCcccccccCCC--------CceecCCCcccccccccC--ccchhhHH-HHHHhh
Confidence 555 555887653210 33332 2233332 234578888866443322 34455555 999999
Q ss_pred ccccccCCC--cchhhHHHHHHHHHHhh
Q 002802 851 YVYQRSTTA--ISVGNLKNLMLVVLASY 876 (879)
Q Consensus 851 ~~y~r~t~s--vsipaP~yYA~~~~~~~ 876 (879)
-|.+.+... .+||||++|||++.+-.
T Consensus 639 ~mNys~~~g~~~rlPApvhYaDk~~kl~ 666 (685)
T COG1431 639 AMNYSNPSGTWSRLPAPVHYADKASKLA 666 (685)
T ss_pred hhccCCCCCceecCCcchhhhHHHHHHH
Confidence 999988877 99999999999998743
No 16
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.39 E-value=4.4e-07 Score=83.78 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=56.3
Q ss_pred HHhcCcEEEEeeCC----ceEEEeecCcccccccccccccCCCCCCCCCccceeeeHHHHHHhhcCCcccCCCCCCeeec
Q 002802 311 RTLKNLRIKTITSN----QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386 (879)
Q Consensus 311 ~~Lkgl~V~~~~~~----r~~kI~gls~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYF~~~Y~i~L~y~p~lP~v~v 386 (879)
..+.|..|.+.|+| +.|+|.+|.+...+.++|+.+ ..+|++|||+++|||.|++ ++||+|.|
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~v 104 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-------------EYETFEEYYKKKYKLDIQN-LNQPLLDV 104 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-------------CCccHHHHHHHhcCeEecc-CCCCcEee
Confidence 45789999999998 899999999888888999532 2699999999999999999 99999998
Q ss_pred CC
Q 002802 387 GK 388 (879)
Q Consensus 387 g~ 388 (879)
..
T Consensus 105 ~~ 106 (122)
T cd02843 105 DH 106 (122)
T ss_pred cC
Confidence 53
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=91.81 E-value=0.33 Score=46.92 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=44.8
Q ss_pred ccCCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHhh
Q 002802 822 TSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 822 TarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~~ 876 (879)
.....=.+|+.=...-.+++|..|||.||+.+.-+...+.+|.|+++|.+ ++.|
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~-~~eY 119 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQ-AKEY 119 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHH-HHHH
Confidence 34455577777555678999999999999999999999999999999998 5554
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=85.97 E-value=5.2 Score=39.49 Aligned_cols=108 Identities=25% Similarity=0.299 Sum_probs=53.5
Q ss_pred CCCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHH
Q 002802 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS 724 (879)
Q Consensus 646 ~~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~ 724 (879)
+.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- ..+... +-.+| =.+|.|.|..+|+.
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR~-f~i~~~--~~~dD----------y~~M~Evl~RR~~~ 71 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYRR-FNIKTV--DGGDD----------YAAMREVLTRRFKR 71 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-EE-EEEE----STT-H----------HHHHHHHHHHHHCC
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEECCccChhhCce-EecCCC--CCCcH----------HHHHHHHHHHHHhc
Confidence 3567899999999753 2367787765553 22234442 333311 11133 25888888877753
Q ss_pred h---CCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccce
Q 002802 725 S---GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTK 783 (879)
Q Consensus 725 ~---~~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtR 783 (879)
. ...+|+-||| || +.||+.. .++|+++++-. .++.=++=.+.|.|+
T Consensus 72 ~~~~~~~lPDLilI--DG-G~gQl~a--------a~~~l~~lgl~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 72 LKEEKEPLPDLILI--DG-GKGQLNA--------AKEVLKELGLN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp CHHHT----SEEEE--SS-SHHHHHH--------HHHHHHCTT------EEEEESSSSE---
T ss_pred ccccCCCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCCC--eEEEEEEeccccccc
Confidence 1 1268998876 77 5676654 46677766433 333333334446666
No 19
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=76.32 E-value=19 Score=43.35 Aligned_cols=110 Identities=32% Similarity=0.357 Sum_probs=64.7
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHhCC
Q 002802 649 TIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGK 727 (879)
Q Consensus 649 tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~ 727 (879)
.-|-++|+||-... -.|+++|.-.|. |.-..|.- .++... +-.+| =.+|+|.|...|+....
T Consensus 382 ~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------ya~m~Evl~RR~~r~~~ 444 (574)
T TIGR00194 382 KRIEIFDISHIDGS----QTVGSMVVFEDGKPLKASYRR-YNINSI--TGGDD----------YAAMREVLRRRYSSIQK 444 (574)
T ss_pred CEEEEEECCccCCC----cceEEEEEEeCCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHHhhhcc
Confidence 67889999997532 367887765554 22234432 222211 11233 24788888777654211
Q ss_pred ----CCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEee--cccceeecCC
Q 002802 728 ----RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK--NHHTKFFQSG 788 (879)
Q Consensus 728 ----~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~K--rhhtRff~~~ 788 (879)
.+|+-||| || +.||+..+ .+++++++-. ..+.+|-..| ||.+++|..+
T Consensus 445 ~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg~~--~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 445 KNNLPLPDLILI--DG-GKGQLNAA--------LEVLKSLGVV--NKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred ccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCCC--CCCcEEEEEecCCCceEEEeCC
Confidence 47987775 77 56777654 5566666431 1355666666 7778888654
No 20
>PRK11617 endonuclease V; Provisional
Probab=76.02 E-value=1e+02 Score=32.46 Aligned_cols=35 Identities=9% Similarity=-0.119 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHhh
Q 002802 835 IGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 835 ~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~~ 876 (879)
..++.|+--.++-.+|-- -++|.|+..||.+|++.
T Consensus 179 h~i~l~~A~~~v~~~~~~-------yRlPePlR~Ad~ls~~~ 213 (224)
T PRK11617 179 HRVSLDSALAWVQRCMKG-------YRLPEPTRWADALASRR 213 (224)
T ss_pred CCcCHHHHHHHHHHHccC-------CCCCHHHHHHHHHHhhh
Confidence 357889988999888743 38999999999998763
No 21
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=67.86 E-value=42 Score=40.90 Aligned_cols=110 Identities=22% Similarity=0.355 Sum_probs=65.1
Q ss_pred CCCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHH
Q 002802 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS 724 (879)
Q Consensus 646 ~~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~ 724 (879)
..|..|-++|+||-.. .-.|+++|.-.|. |.-..|.- .++.... .-++|. .+|+|.|...|..
T Consensus 452 ~~p~rIE~fDiSh~~G----~~~VasmVvf~~G~p~k~~YR~-f~ik~~~-~~~DD~----------asM~Evl~RR~~r 515 (691)
T PRK14672 452 RIPTLIEGFDISHLGG----KYTVASLICFKNGAPDTKNYRL-FNLRAHD-TRIDDF----------ASMREAIARRYTH 515 (691)
T ss_pred CCCCeEEEEECCccCC----cCceEEEEEEECCccChhhCCe-eeccCCC-CCCchH----------HHHHHHHHHHhhc
Confidence 3578999999999753 2368888776554 22233432 2332110 012332 4788888777754
Q ss_pred hC--CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeec
Q 002802 725 SG--KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (879)
Q Consensus 725 ~~--~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (879)
.. ..+|+-||| || +.||+.. .++++++++- .+.+|-..||.-.-|+|
T Consensus 516 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elgl----~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 516 TPEGYTLPDLILV--DG-GIGHVSA--------AQHVLDALGL----SIPLVGLAKRAEELFIP 564 (691)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecccEEEeC
Confidence 21 258988776 66 5677654 3566666653 46688888876444444
No 22
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=63.79 E-value=57 Score=38.79 Aligned_cols=107 Identities=25% Similarity=0.373 Sum_probs=63.1
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-|+|+||-.. .-.|+++|.-.|. |.-..|.- .++... +-.+| =.+|+|.|...|...
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~p~k~~YR~-f~Ik~~--~~~dD----------y~~m~Evl~RR~~r~ 427 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRNGKPDKKNYRR-FKIKTV--EGIDD----------FASIAEVVRRRYSRL 427 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeCCccChhhcCe-eecCCC--CCCCH----------HHHHHHHHHHHHhhc
Confidence 456788999999653 2367887765554 32233432 333211 11232 247888887766542
Q ss_pred CC---CCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeec
Q 002802 726 GK---RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (879)
Q Consensus 726 ~~---~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (879)
.. .+|+-||| || +-||+..+ .+++++++- .+.+|-..|+. .++|.
T Consensus 428 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~~l~elg~----~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 428 LEENSELPDLIVI--DG-GKGQLSSA--------FKELRKLGL----KIPLISIAKRE-EEIYV 475 (519)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEcCc-eEEEe
Confidence 12 48987775 66 56777654 566666643 46778888876 44554
No 23
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=60.53 E-value=64 Score=39.31 Aligned_cols=108 Identities=27% Similarity=0.289 Sum_probs=64.1
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- .++... +-.+| =.+|+|.|...|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~ik~~--~~~dD----------y~~m~Evl~RR~~r~ 476 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVDGKPKKSDYRK-FKLRSF--EGSDD----------YAAMREVVTRRYSGS 476 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhcc
Confidence 456889999999753 2367887765553 33334442 333211 11233 248888887777542
Q ss_pred C---CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeecC
Q 002802 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQS 787 (879)
Q Consensus 726 ~---~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~ 787 (879)
. +.+|+-||| || +.||+..+ .+++++++- .+.+|-..||. .++|..
T Consensus 477 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg~----~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 477 LAEELPLPDLIVI--DG-GKGQVNSA--------WKVLQELGL----SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 1 248988876 77 56777554 566666653 46677778844 556543
No 24
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=60.45 E-value=82 Score=37.96 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=64.1
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- .++........+| =.+|+|.|...|+..
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YRk-f~ik~~~~~~~DD----------~a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKMGKPFKDGYRV-YKINSLLKGEIDD----------FKAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCCe-eeccCCCCCCCCH----------HHHHHHHHHHHHhhc
Confidence 467899999999753 2367887766554 22233432 3332110000233 247888887777542
Q ss_pred C---CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeec
Q 002802 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (879)
Q Consensus 726 ~---~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (879)
. +.+|+-||| || +.||+..+ .+++++++- ..++.+|-..|+.-+ +|-
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg~--~~~i~v~gLaK~~e~-i~~ 471 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQLNAA--------YSILKGLKI--ENKVKVCALAKKEET-IFL 471 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC--CCCceEEEEecCCeE-EEe
Confidence 1 248987775 77 56777654 566666642 223778888887644 543
No 25
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=60.05 E-value=20 Score=33.62 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 556 ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
+...++.++.+ ...|.|+++.+.+...+..|...|...+.+.||.+..+.. .....+-+...+-++|.-
T Consensus 16 l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 16 LKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 34444555554 3468899888866455788999999999999999999875 455666677888888854
No 26
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=59.00 E-value=55 Score=34.01 Aligned_cols=42 Identities=12% Similarity=0.004 Sum_probs=30.8
Q ss_pred cCCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHH
Q 002802 823 SRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLA 874 (879)
Q Consensus 823 arPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~ 874 (879)
.+|....+ -..++.|+--+++-.+|-- -++|.|+..||++|+
T Consensus 166 ~~PiyVS~---Gh~i~l~~A~~~v~~~~~~-------~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSP---GHRIDLETAVELVLKCCKG-------YRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHccC-------CCCCcHHHHHHHHhc
Confidence 45544433 2357888888888887743 689999999999986
No 27
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.82 E-value=31 Score=37.72 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 556 ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
+...++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 17 l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 17 IAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred HHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3334445554433468899888877667889999999999999999998875 33444446677778874
No 28
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=55.49 E-value=83 Score=37.89 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- .++... +-.+| =.+|+|.|...|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------~~~m~Evl~RR~~r~ 422 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWEDGSMNKKEYRR-YKIKTV--DGIDD----------YASLREVLTRRARRY 422 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhhc
Confidence 357889999999653 2368888776654 22233432 333221 11233 248888888777542
Q ss_pred C---CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeecC
Q 002802 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQS 787 (879)
Q Consensus 726 ~---~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~ 787 (879)
. +.+|+-||| || +-||+..+ .+++++++- .+.+|-..|+. .++|..
T Consensus 423 ~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg~----~i~v~glaK~~-e~i~~~ 471 (567)
T PRK14667 423 KEGENPMPDLWLI--DG-GKGQLSVG--------IEVRDRLGL----NIKVFSLAKKE-EILYTE 471 (567)
T ss_pred cccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecC-cEEEcC
Confidence 2 148987775 67 56776544 566666653 36677778875 556643
No 29
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.03 E-value=44 Score=36.51 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=48.3
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 558 ~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
..++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. .....+-+.+.+.++|.
T Consensus 20 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 20 LEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444444433468888888877567889999999999999999988875 34555556677777774
No 30
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.23 E-value=43 Score=36.52 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 556 ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
+.+.++.++++....|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 17 l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 17 LKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344445554433468898888877567889999999999999999988874 34555556777888885
No 31
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=51.07 E-value=1.1e+02 Score=37.29 Aligned_cols=108 Identities=22% Similarity=0.267 Sum_probs=62.6
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- .++.. .+-.+| =.+|+|.|...|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YRk-f~Ik~--~~~~DD----------ya~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWEDGKMKKSDYRK-FIIKT--VVGVDD----------FASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCCe-eecCC--CCCCCH----------HHHHHHHHHHHhhcc
Confidence 457889999999653 2367787765553 22233432 22211 011233 247888887766542
Q ss_pred C--C-CCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeec
Q 002802 726 G--K-RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (879)
Q Consensus 726 ~--~-~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (879)
. + .+|+-||| || +-||+..+ .+++++++-. .+.+|-..|+.. ++|-
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~elgl~---~i~vigLaK~~e-~i~~ 506 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQLHAA--------AEALEAIGIT---DQPLASIAKREE-IIYV 506 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCCC---CCcEEEEecCCe-EEEC
Confidence 1 1 48987775 77 56777654 5667666532 266777778764 4554
No 32
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.05 E-value=56 Score=35.84 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=48.7
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 558 ~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
..++.++.+....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+..++.++|.-
T Consensus 20 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 20 TCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443322358898888877677889999999999999999999875 344444567777888743
No 33
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.45 E-value=28 Score=42.21 Aligned_cols=7 Identities=14% Similarity=0.496 Sum_probs=3.4
Q ss_pred eeeHHHH
Q 002802 360 EITVYDY 366 (879)
Q Consensus 360 ~iTV~eY 366 (879)
..|..-|
T Consensus 860 k~TLLHf 866 (1102)
T KOG1924|consen 860 KTTLLHF 866 (1102)
T ss_pred hhHHHHH
Confidence 4555443
No 34
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.45 E-value=63 Score=35.31 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
.++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 27 ~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 27 GVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443322358898888877677899999999999999999988875 344555567788888853
No 35
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.31 E-value=52 Score=35.84 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 570 ~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
.|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 58898888877667889999999999999999988874 34444456777778873
No 36
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.54 E-value=54 Score=35.99 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
.++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 21 ~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 21 QIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred HHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444323357888888877567889999999999999999988875 344555567788888864
No 37
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.84 E-value=54 Score=36.71 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 560 ~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
++.++++....|.|+++.+.++..+..|...|...+.+.||.+..+.. ......-+..++.++|.
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444433458898888877677889999999999999999988875 34444446677788874
No 38
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=47.79 E-value=1.1e+02 Score=37.05 Aligned_cols=100 Identities=27% Similarity=0.279 Sum_probs=58.7
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- .++... +-.+| =.+|+|.|...|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------ya~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYRR-YNIKGV--TGGDD----------YAAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhcc
Confidence 467889999999653 2367887765553 33334432 333221 11233 247888887766542
Q ss_pred ---CCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEee
Q 002802 726 ---GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK 778 (879)
Q Consensus 726 ---~~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~K 778 (879)
.+.+|+-||| || +.||+..+ .+++++++- .+.+|-..|
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl~~a--------~~~l~~lg~----~i~v~glaK 485 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQLNAA--------KEVLEELGL----DIPVVGLAK 485 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHCCC----CCcEEEEEe
Confidence 1258988776 77 56777654 556666653 255666666
No 39
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.52 E-value=60 Score=35.42 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=49.1
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 557 e~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
...++.++++....|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 20 k~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 20 RETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred HHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333444444422358898887766566889999999999999999999875 34455557788888885
No 40
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.52 E-value=53 Score=35.88 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 556 ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
+...++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 19 lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 19 VAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444544422357888887776567889999999999999999988875 344555566777888854
No 41
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=46.37 E-value=1.4e+02 Score=36.68 Aligned_cols=100 Identities=24% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-++|+||-.. .-.++++|.-.|. |.-..|.. .++... + .+| =.+|.|.+...|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~G~p~k~~YR~-f~i~~~--~-~dD----------~~~m~ev~~RR~~~~ 532 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFEDGKPARDAYRT-YAFEDG--E-GDD----------YGTLAAWAGRRVESG 532 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEECCccChhhCCe-eeCCCC--C-CCh----------HHHHHHHHHHHhcCC
Confidence 567889999999753 2357777765553 22233432 222211 1 132 247888887766542
Q ss_pred CCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEee
Q 002802 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK 778 (879)
Q Consensus 726 ~~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~K 778 (879)
..+|+-||| || +.||+..+ .+++++++-+ ..+.+|-..|
T Consensus 533 -~~~PDLili--DG-G~gQl~aa--------~~~l~e~g~~--~~~~v~~laK 571 (694)
T PRK14666 533 -PPWPDLLLV--DG-GRGQLAAV--------VRALEEAGMG--GLFAVASIAK 571 (694)
T ss_pred -CCCCCEEEE--cC-CHHHHHHH--------HHHHHHcCCC--CCccEEEEec
Confidence 258987775 66 56777654 5666666532 2366777777
No 42
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=46.36 E-value=63 Score=36.37 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=47.7
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
.++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. .....+-+-+.+.++|.
T Consensus 92 ~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 92 EVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3444544433458899888877667889999999999999999988774 34444456677777774
No 43
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=46.32 E-value=68 Score=35.25 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=47.3
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 560 ~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
.+.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+...+.++|.-
T Consensus 29 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 29 VAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334443323358898888776567889999999999999999988875 445555566777777743
No 44
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.79 E-value=63 Score=35.48 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
.++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 20 ~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 20 RVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443322358898888877567889999999999999999988875 344444566777888753
No 45
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.58 E-value=67 Score=35.30 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=48.4
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 558 ~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
..++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 20 ~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 20 AEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443322358898888877567889999999999999999888764 344444566788888854
No 46
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.85 E-value=61 Score=35.58 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 556 ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
+...++.++++....|.|+++..-++..+..|..+|...+.+.||.+-.+.. ......-+...+.++|.
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3334445544433358899888876567889999999999999999987764 34444446677788874
No 47
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.31 E-value=66 Score=35.13 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc--cCCccccc
Q 002802 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLNSLL 633 (879)
Q Consensus 558 ~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK--LGG~n~~l 633 (879)
..++.++++....|.|.++...++..+..|..+|...+.+.||.+..+.. ......-+..++-++|.. .-|+|-.+
T Consensus 21 ~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 21 VRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 33444444323358898888877677889999999999999999988875 234444577888888875 55665543
No 48
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.13 E-value=69 Score=34.93 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=48.3
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 557 e~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
...++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 18 ~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 18 KQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444433 2357898888877567889999999999999999988875 34444456677888875
No 49
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.62 E-value=69 Score=34.92 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=46.9
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
.++.++++....|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+++.++|.
T Consensus 20 ~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 20 QVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred HHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344443322357888888766566789999999999999999988875 33444456677888874
No 50
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.01 E-value=78 Score=34.58 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=48.9
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 557 e~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
...++.++++....|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 19 k~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 19 AEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444444322357888888877567889999999999999999987774 345555567788888853
No 51
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.50 E-value=70 Score=34.86 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeecc-ccchhHHHHHHHHHHh
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~-~~~~q~~~Ni~lKiNa 624 (879)
.++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+... .....-+.+.+.++|.
T Consensus 20 ~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 20 KNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred HHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444433 23578888888765678899999999999999999998753 3444446677778874
No 52
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.42 E-value=72 Score=34.84 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 570 ~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
.|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58888888876566789999999999999999988874 344444566777888754
No 53
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.61 E-value=78 Score=34.42 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 556 ve~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
+...++.++++....|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 18 lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 18 IKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444444321247888888877566788999999999999999988774 344444466777888753
No 54
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.59 E-value=82 Score=34.40 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 558 ~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
..++.++++....|.|+++..-++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 19 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 19 NKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443323458888888776567889999999999999999988775 344444566778888853
No 55
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.11 E-value=79 Score=34.81 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=47.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
.++.++++ .-.|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 23 ~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 23 DVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444433 2358898888877567889999999999999999988774 34445556677777774
No 56
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.03 E-value=78 Score=34.58 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 558 ~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
..++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 21 ~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 21 EEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444433 2357888888777567889999999999999999988875 344444466777788754
No 57
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=38.50 E-value=1.9e+02 Score=34.99 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=62.0
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHh
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (879)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- .++.. + .+|. .+|+|.|...|...
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~G~~~k~~YR~-f~i~~-~---~dD~----------~~m~Evl~RR~~r~ 434 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVDGSAETADYRR-KKLTE-R---NDDY----------ANMRELVRWRAERA 434 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEECCccCHHHcCe-ecCCC-C---CChH----------HHHHHHHHHHHHhh
Confidence 356788999999653 2367887765554 22233432 33322 1 2332 47788877766542
Q ss_pred C-----CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeec
Q 002802 726 G-----KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (879)
Q Consensus 726 ~-----~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (879)
. +.+|+-||| || +-||+..+ .+++++++- .+.+|-..|+. .++|-
T Consensus 435 ~~~~~~~~~PDLili--DG-G~gQl~aa--------~~~l~elg~----~i~v~glaK~~-e~i~~ 484 (577)
T PRK14668 435 VEGRDDRPDPDLLLI--DG-GDGQLGAA--------RDALAETGW----DVPAIALAKAE-ELVVT 484 (577)
T ss_pred hccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEcCC-eEEEc
Confidence 1 258987775 66 56776543 566766653 36677777865 34554
No 58
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.65 E-value=96 Score=33.93 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=44.4
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 569 ~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+++.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357888888877567889999999999999999988875 344444567788888853
No 59
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.60 E-value=98 Score=33.80 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=45.9
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 560 ~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
++.++++ ...|.|+++..-++..+..|...|...+.+.||.+-.+.. ......-+-+.+.++|.
T Consensus 22 i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 22 VAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred HHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444433 2357888888876566889999999999999999988875 33444445667777774
No 60
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.14 E-value=1.1e+02 Score=33.60 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=43.8
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 569 ~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+..++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468898888877567889999999999999999988875 34444446677888873
No 61
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=35.11 E-value=52 Score=33.43 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=34.1
Q ss_pred eeEEEEEeccccceEEEEEeeeecCCCCCCCCchhHHHHHHHHHHHh
Q 002802 68 TNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114 (879)
Q Consensus 68 tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~ 114 (879)
==+|+.++...+.++|-|+|.+ .+...+|++++-+++.+....
T Consensus 107 f~~Frf~vd~g~~vlYcyEvqv----~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 107 FTMFRFTVDTGDPVLYCYEVQV----ASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred EEEEEEEcccCCeEEEEEEEee----hhhhhccChHHHHHHHHHHHH
Confidence 3468887777778999999999 456778999999998876543
No 62
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.01 E-value=1.1e+02 Score=33.35 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 570 ~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
.|.|+++...++..+..|...|...+.+.||.+-.+.. .....+-+.+.+.++|.
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888876567889999999999999999988774 34455556677777774
No 63
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=33.87 E-value=1.1e+02 Score=33.32 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=48.6
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 558 ~~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
...+.++++....|.|.++...+.-.+..|-..|...+.+.|+.+..+.. ......-+.++..++|.
T Consensus 18 ~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 18 EKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 33444444323368898888876456789999999999999999998875 44555567777777764
No 64
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.76 E-value=1.2e+02 Score=33.45 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=47.0
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 560 ~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
++.+++. ...|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 22 v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 22 IETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred HHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433 2357888888876567889999999999999999988775 344444567777888743
No 65
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.46 E-value=1.3e+02 Score=32.69 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=44.6
Q ss_pred CCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHhc
Q 002802 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (879)
Q Consensus 568 ~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNaK 625 (879)
...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468898888877567889999999999999999988875 344444566777788743
No 66
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=32.83 E-value=3.2e+02 Score=33.08 Aligned_cols=107 Identities=27% Similarity=0.334 Sum_probs=60.2
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHH-
Q 002802 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS- 724 (879)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~- 724 (879)
.|.-|-++|.||.... -.|+++|.-.+. |.-..|.- ..+. .+-.+ +=.+|+|.|..-|..
T Consensus 378 ~p~rIE~~D~Sh~~g~----~~V~smvvf~~g~~~k~~YRr-y~i~---~~~~d----------Dya~m~evl~RR~~~~ 439 (581)
T COG0322 378 APYRIECFDISHIQGE----DTVGSMVVFEDGGPSKKDYRR-YNIK---ITGGD----------DYASMREVLTRRYSRL 439 (581)
T ss_pred CceeEEEeecCccccc----cceeEEEEEcCCCCChhhccc-cccc---CCCCc----------hHHHHHHHHHHHhhhc
Confidence 4677889999997532 357777766654 11112221 1111 00012 224666766543433
Q ss_pred hCCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeec
Q 002802 725 SGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (879)
Q Consensus 725 ~~~~~P~~IIiyRDGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (879)
....+|+-|+| || +-||+..+ ++++++++-.+ | +|-+.|+-.+-|++
T Consensus 440 ~~~~~Pdli~i--DG-GkgQl~~a--------~~vl~~l~~~~-~---viglaK~~~~~~~~ 486 (581)
T COG0322 440 LKEELPDLILI--DG-GKGQLNAA--------KEVLKELGLDI-P---VIGLAKGEEELLLP 486 (581)
T ss_pred cccCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCCCc-c---EEEEEecCceeEec
Confidence 22379966654 66 56777654 56677765443 2 78888888755555
No 67
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.53 E-value=1.4e+02 Score=32.64 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 559 ~~~~~~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
.++.++.+ ...|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+..++.++|.
T Consensus 22 ~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 22 RAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444433 2358898888877667889999999999999999988774 34455556677777774
No 68
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.25 E-value=1.3e+02 Score=32.97 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccchhHHHHHHHHHHh
Q 002802 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (879)
Q Consensus 570 ~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiNa 624 (879)
.|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888876566889999999999999999988875 34444456677777874
No 69
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.14 E-value=85 Score=38.32 Aligned_cols=10 Identities=0% Similarity=0.325 Sum_probs=5.5
Q ss_pred HHHHHHHHHh
Q 002802 105 KVIDRVQETY 114 (879)
Q Consensus 105 ~i~~~l~~~~ 114 (879)
.++.+|.-+|
T Consensus 657 dlfakL~~~F 666 (1102)
T KOG1924|consen 657 DLFAKLALKF 666 (1102)
T ss_pred HHHHHHHHHh
Confidence 4566665554
No 70
>PRK00766 hypothetical protein; Provisional
Probab=28.52 E-value=95 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHhh
Q 002802 835 IGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 835 ~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~~ 876 (879)
.+.+.++-.+++-.+|.-| ++|.|+..||++|+..
T Consensus 152 ~gi~l~~A~~lv~~~~~~~-------riPEPlR~Ahlia~~~ 186 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTRS-------LIPEPLRLAHLIASGV 186 (194)
T ss_pred cCCCHHHHHHHHHHhccCC-------CCchhhHHHHHHHHHh
Confidence 5688999999999888633 7999999999999875
No 71
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=23.44 E-value=62 Score=30.54 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=20.4
Q ss_pred ccccccCCCcchhhHHHHHHHHHHhh
Q 002802 851 YVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 851 ~~y~r~t~svsipaP~yYA~~~~~~~ 876 (879)
|.|+-.-++-=+|.|++|||+++++.
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l 37 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRL 37 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHH
Confidence 55666667778999999999999874
No 72
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=22.08 E-value=73 Score=40.41 Aligned_cols=37 Identities=32% Similarity=0.677 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcCcccccccccccccccccCCCCCCCCCCE
Q 002802 15 NGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQR 63 (879)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rpg~Gt~G~~ 63 (879)
++.|+.-||||| .||+.+| ....-||.-||+...-+.
T Consensus 2 a~lppg~ppppp-pppg~ep-----------ps~pppPppPg~~~~~r~ 38 (2365)
T COG5178 2 ASLPPGNPPPPP-PPPGFEP-----------PSQPPPPPPPGVNVKKRS 38 (2365)
T ss_pred CCCCCCCCcccc-cCCCCCC-----------CCCCCCccCCCcchhhhc
Done!