Query 002802
Match_columns 879
No_of_seqs 217 out of 1110
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 17:46:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002802.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1516-1519//hhsearch_pdb/002802hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1434.0 82.2 764 48-876 24-815 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1338.7 65.7 795 48-876 16-999 (1046)
3 1yvu_A Hypothetical protein AQ 1.0 1 1 809.9 35.9 648 66-876 5-689 (706)
4 1u04_A Argonaute, hypothetical 1.0 1 1 753.1 42.1 658 63-875 3-751 (771)
5 2yhb_A QDE-2, post-transcripti 1.0 1 1 744.4 29.3 363 491-875 2-394 (437)
6 3ho1_A Argonaute; argonaute, p 1.0 1 1 649.3 50.4 635 62-875 5-665 (685)
7 2yha_A Post-transcriptional ge 1.0 1 1 604.3 30.0 321 491-876 2-346 (388)
8 2w42_A PIWI, putative uncharac 1.0 1 1 435.0 15.0 348 468-875 5-400 (427)
9 1vyn_A Argonaute2; nucleic aci 1.0 1 1 205.9 9.4 131 283-427 2-143 (143)
10 1r6z_P Chimera of maltose-bind 1.0 1 1 205.1 9.2 124 276-413 375-509 (509)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1433.97 Aligned_cols=764 Identities=33% Similarity=0.586 Sum_probs=674.7
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEEE
Q ss_conf 43466799999889789999468787851665028999966422799987881347999999999962-10289854540
Q 002802 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYN-AELDGKDFAYD 126 (879)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~F~i~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~-~~~~g~~~~yD 126 (879)
...+++|||+||.|++|.|+||||++.+. +..+|||||+|++ +.+.++++|+|++++.+++. ..|++..+|||
T Consensus 24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECC--CCCEEEEEEEECC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 56679899789888478999556998778--8862650378478----76767799999999998755665068607875
Q ss_pred CCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCC
Q ss_conf 98605653788999614899961554557899999999999998863233688999739999997310066889999727
Q 002802 127 GEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRG 206 (879)
Q Consensus 127 G~k~lfS~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g 206 (879)
|+++|||+++||.+..+.++.+... ++ .+.++|+|+|++++++++.+|..+|+|
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~------------~~--------------~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLP------------GE--------------GKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCCCCEEEEEECC------------CC--------------CCCCEEEEEEEEEEECCHHHHHHHHCC
T ss_conf 8631788876787786369998637------------88--------------987279999999024388999999649
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCEEEEEECCCCEEECCC
Q ss_conf 98867478999999999601322073002432237999883137997787421268999708903686732400110476
Q 002802 207 QESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPG 286 (879)
Q Consensus 207 ~~~~~~~~~iq~Ldiilr~~~~~~~~~~~g~~fF~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~~~~ 286 (879)
+..+.+++++|+||||||+.++ ..+..+||+||++......++++|+|+|+||++|||+++++|+||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECC
T ss_conf 9878828999999999976221-246426877558987750116898799845067898517852785414310276077
Q ss_pred HHHHHHHHHCCCCCC-------CCHHHHHHHHHHCCCEEEEEE---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 088999971399998-------803399999773673999752---7932999405865533333102258987898875
Q 002802 287 PVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTIT---SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEV 356 (879)
Q Consensus 287 ~l~d~l~~~~~~~~~-------~~~~~~k~~~~Lkgl~V~~~~---~nr~~kI~gls~~~a~~~~F~~~~~~~~~~~~~~ 356 (879)
+|+|++.+..+.++. .+.++.++++.|+|++|.++| ++|.|+|.||++.++.+++|.++.++ |
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~-----g-- 303 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES-----G-- 303 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS-----S--
T ss_pred CHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCC-----C--
T ss_conf 099999998634550220356577899999998579389983037788659995378899877678765278-----9--
Q ss_pred CCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 43133398999863597446799997363289999803304512784774223569999999999994189599999999
Q 002802 357 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLS 436 (879)
Q Consensus 357 ~~~~iTV~eYf~~~Y~i~L~~~p~lP~i~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~s~~~P~eR~~~i~ 436 (879)
++.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|+++|||+++|++.|+++|+++++..|.+|++.|.
T Consensus 304 ~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~ 382 (861)
T 4f3t_A 304 QTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEIS 382 (861)
T ss_dssp CEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHCCCCCCC-CCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 841688899998753952479-9976388348888752565668940784455668989999999987549799999999
Q ss_pred HHHHHCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCEECCCCC--CCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC-
Q ss_conf 99660169995334412378614603655477089921138984--459988854447842105665313899994880-
Q 002802 437 NALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR- 513 (879)
Q Consensus 437 ~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~--~~~~~~g~Wn~~~~~f~~p~~i~~Wavv~~~~~- 513 (879)
++++.++++.+++|++|||+|+++|++|+||||+||+|.||++. ...|.+|.||+++++|++|+++++|++++|+..
T Consensus 383 ~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~ 462 (861)
T 4f3t_A 383 KLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR 462 (861)
T ss_dssp HHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTT
T ss_pred HHHHHHCCCCCHHHHHCCCEEECCEEEEEEEEECCCEEEECCCCCCCCCCCCCCEECCCCEECCCCCCCEEEEEEECCCC
T ss_conf 99987168975689977978838756897798258648856876433378878513569887027544405999845754
Q ss_pred ----HHHHHHHHHHHHHHHHCCCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHH
Q ss_conf ----00999999999997623964579-9510106953348980578999999998539999829999928999986447
Q 002802 514 ----CDIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYG 588 (879)
Q Consensus 514 ----~~~~~f~~~L~~~~~~~G~~i~~-P~~i~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~il~ilp~~k~~~~Y~ 588 (879)
..++.|++.|.+.|+.+||.+.. |....... ..++++.+++.+++..+ .++|||||+|+ + .+.|+
T Consensus 463 ~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~~-~~qlvl~Ilp~-~-~~~Y~ 532 (861)
T 4f3t_A 463 QCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTYA-GLQLVVVILPG-K-TPVYA 532 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHST-TCCEEEEEESS-S-CTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-------CHHHHHHHHHHHHHHCC-CCCEEEEEECC-C-CCHHH
T ss_conf 445899999999999998507865479973777258-------45789999999985268-98389999589-8-42899
Q ss_pred HHHHHHHCCCCCEEEEEECC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 79997420239244564023---456457989999988204994323343479998832588879999984239999999
Q 002802 589 PWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD 665 (879)
Q Consensus 589 ~iK~~~~~~~gI~TQci~~~---~~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~ 665 (879)
.||++||.+.||+||||..+ +.++||+.||+||||+||||+||.+... ..|.+...+|||||+||+||++|...
T Consensus 533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~ 609 (861)
T 4f3t_A 533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK 609 (861)
T ss_dssp HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf 999974306784228997212255567899999999988619833044665---46534689658998772146888778
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH
Q ss_conf 88299999706889532177899960566311123222356862489999999999987299999449997157793679
Q 002802 666 IPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQF 745 (879)
Q Consensus 666 ~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf 745 (879)
.|||||+|||+|+ .+++|.+.+++|.+++|+|++| ..|++++|.+|++.+ +.+|++|||||||||||||
T Consensus 610 ~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l---------~~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~ 678 (861)
T 4f3t_A 610 KPSIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDL---------AAMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQF 678 (861)
T ss_dssp CCEEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTH---------HHHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGH
T ss_pred CCEEEEEEEECCC-CCCEEEEEEEECCCCCCHHHHH---------HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHH
T ss_conf 8659999998479-8565878999758995589989---------999999999999982-8998459999268776889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCC------CCCCCCCCEEEECCCCCCCCCCEEECCCCCC
Q ss_conf 9999999999999999814899981999998432320010379------9999999007506555686222583112475
Q 002802 746 NQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSG------SPDNVPPGTVVDNKVCHPRNYDFYLCAHAGM 819 (879)
Q Consensus 746 ~~Vl~~Ei~~i~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~------~~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~ 819 (879)
.+|+++|+++|++||..++.+|+|+||||||+||||+|||+.+ ..+|++||||||++||||.+||||||||.++
T Consensus 679 ~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~ 758 (861)
T 4f3t_A 679 QQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGI 758 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECC
T ss_conf 99999999999999998544779857999997256635622587533344689898401157502588777999888514
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 433378547999658999988999999985203310389865022799999998832
Q 002802 820 IGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 820 ~GTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~~YA~~~a~~~ 876 (879)
|||+|||||+||+||+++++|+||+|||+|||+|+|||++||+||||||||++|.|-
T Consensus 759 qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~ 815 (861)
T 4f3t_A 759 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRA 815 (861)
T ss_dssp SSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 136667668998379999999999999998655210478887762889999999999
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1338.67 Aligned_cols=795 Identities=22% Similarity=0.321 Sum_probs=639.0
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC-------------------CEEEEEEEEEECCCCC---------C-CC
Q ss_conf 43466799999889789999468787851665-------------------0289999664227999---------8-78
Q 002802 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVE-------------------GHFYHYSVSVSYEDGR---------P-VD 98 (879)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~F~i~~~~~~-------------------~~~y~Y~V~i~~~~~~---------~-v~ 98 (879)
...++.||||||.|++|.|+||||.+.+.+.. ..+|+|+|+|+++..+ + ..
T Consensus 16 ~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~ 95 (1046)
T 4f1n_A 16 IYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQEL 95 (1046)
T ss_dssp CCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------C
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 35478999889899678999637998547775433221112334443335415899889975645665444566765322
Q ss_pred CCHHHHHHHHHHHHHH--HHHCCCCCEEEECCCEEEECCCCC---CCCCEEEEEEC-----CCCCCCCCCCCCCCCCCCC
Q ss_conf 8134799999999996--210289854540986056537889---99614899961-----5545578999999999999
Q 002802 99 GKGAGRKVIDRVQETY--NAELDGKDFAYDGEKSLFTVGPLP---RNKLEFTVVLE-----DISSNRNNGNASPDAHGSP 168 (879)
Q Consensus 99 ~k~~~r~i~~~l~~~~--~~~~~g~~~~yDG~k~lfS~~~Lp---~~~~~~~v~l~-----~~~~~~~~~~~~~~~~~~~ 168 (879)
.+...++|+..|+++. ...+ +..+||||+++|||.++|| .....|.|... +...... .++++-
T Consensus 96 ~~~k~~~ii~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~---~~~~~~--- 168 (1046)
T 4f1n_A 96 SKPKKYELIEALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAP---SNKASL--- 168 (1046)
T ss_dssp CHHHHHHHHHHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC----------------------------
T ss_pred CHHHHHHHHHHHHHHCCHHHHC-CCCEEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCC---CCCCCC---
T ss_conf 1237999999999726135642-886046472216878767765357776698655334466776654---433222---
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCC--H---HHHHHHHHHHHHHHHHHC-CC-EEC-CCCCC
Q ss_conf 9886323368899973999999731006688999972798867--4---789999999996013220-73-002-43223
Q 002802 169 NGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESEN--S---QEAFRVLDIILRQHAAKQ-GC-LLV-RQSFF 240 (879)
Q Consensus 169 ~~~d~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~--~---~~~iq~Ldiilr~~~~~~-~~-~~~-g~~fF 240 (879)
...+.. ..+.++|+|+|+++++|++.+|..||.|+..+. . .+++++|++||++.+... +. ..+ +++||
T Consensus 169 ~~~~~~----~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF 244 (1046)
T 4f1n_A 169 QKKIDP----ELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFF 244 (1046)
T ss_dssp -------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEE
T ss_pred CCCCCC----CCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 345555----5668459999987105179999999728985544333416789999999755655358964875784304
Q ss_pred CCCC-CCCCCCCCCEEEEECCEEEEEEECCCEEEEEECCCCEEECC-----------------CHHHHHHHHHCC-----
Q ss_conf 7999-88313799778742126899970890368673240011047-----------------608899997139-----
Q 002802 241 HNDP-KNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP-----------------GPVVDFLIANQN----- 297 (879)
Q Consensus 241 ~~~~-~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~~~-----------------~~l~d~l~~~~~----- 297 (879)
..+. ....+|++|+|+|+|||+|||+++++|+||||+++++|+++ ++|+|+|.++++
T Consensus 245 ~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~ 324 (1046)
T 4f1n_A 245 IFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAI 324 (1046)
T ss_dssp ECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 67987751037881799976766678518940899725511178466667653100013568860999999986333332
Q ss_pred ---------CCCCCCHHH-------HHHHHHHCCCEEEEEECC---------------CEEEEEECCCCCCCCCCCCCCC
Q ss_conf ---------999880339-------999977367399975279---------------3299940586553333310225
Q 002802 298 ---------VRDPFSIDW-------AKAKRTLKNLRIKTITSN---------------QEYKITGLSEKLCKEQMFSLKQ 346 (879)
Q Consensus 298 ---------~~~~~~~~~-------~k~~~~Lkgl~V~~~~~n---------------r~~kI~gls~~~a~~~~F~~~~ 346 (879)
.+.+...+| .+++++||||+|+++|.+ +.++|.||+..+|.+++|.++.
T Consensus 325 ~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~ 404 (1046)
T 4f1n_A 325 RDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLE 404 (1046)
T ss_dssp HSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC-----
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCC
T ss_conf 22222322357875566544567889999984897899986675445566524434666469863468997731996168
Q ss_pred CCC---C-CCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEECCCEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 898---7-898875431333989998635974467999973632899998033045127847742235699999999999
Q 002802 347 KNV---K-DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVE 422 (879)
Q Consensus 347 ~~~---~-~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~i~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik 422 (879)
++. + +..|+ ++.++||+|||+++|||+|+| |+||||++|++ .+|||||||.|++||+|+++|++ +++||+
T Consensus 405 ~~~~~~~~~~~g~-~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIK 478 (1046)
T 4f1n_A 405 SSLKKNSAPKPNE-KPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYID 478 (1046)
T ss_dssp -------------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHH
T ss_pred CCCCCCCCCCCCC-CCEEEEHHHHHHHHHCCCCCC-CCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHHHH
T ss_conf 7544456666776-752788999999873940479-99877997897--74213104796689624512351--789999
Q ss_pred HHCCCHHHHHHHHHHHHH-----HCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCEECCCCCC----------CCCCCC
Q ss_conf 941895999999999966-----01699953344123786146036554770899211389844----------599888
Q 002802 423 KSRQKPQERMSVLSNALK-----LSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED----------FSPRNG 487 (879)
Q Consensus 423 ~s~~~P~eR~~~i~~~~~-----~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~----------~~~~~g 487 (879)
+++++|.+|++.|.+... .+.+..+++|++|| +|+.+|++|+||||+||.|+||++.. ..+++|
T Consensus 479 fAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G 557 (1046)
T 4f1n_A 479 FSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKG 557 (1046)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 8756949999999999887541024666557678628-756850367788748975761687545555654344576678
Q ss_pred CCCCCCCEEECCCC-CCEEEEEEEC-C-C-------HHHHHHHHHHHHHHHHCCCCCCCCC--CEECC-----------C
Q ss_conf 54447842105665-3138999948-8-0-------0099999999999762396457995--10106-----------9
Q 002802 488 RWNFNNKKLVQPTK-IERWAVVNFS-A-R-------CDIRSLVRDLIKCGEMKGILIDQPF--DVFEE-----------S 544 (879)
Q Consensus 488 ~Wn~~~~~f~~p~~-i~~Wavv~~~-~-~-------~~~~~f~~~L~~~~~~~G~~i~~P~--~i~~~-----------~ 544 (879)
.|||++++|++|+. +..|+++++. . + .++..|++.|.+.++..||.+..|. .+... .
T Consensus 558 ~Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~ 637 (1046)
T 4f1n_A 558 NWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGG 637 (1046)
T ss_dssp BCCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC------
T ss_pred CCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 52688887713786664079999727876665423899999999999999866985478778741213455431112334
Q ss_pred CCCCCC------------------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 533489------------------80578999999998539999829999928999986447799974202392445640
Q 002802 545 PQFRRS------------------SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA 606 (879)
Q Consensus 545 ~~~~~~------------------~~~~~ve~~~~~~~~~~~~~~~~il~ilp~~k~~~~Y~~iK~~~~~~~gI~TQci~ 606 (879)
.+.+.. ......+..+..+.++. ..++|||||||++++.++|+.||++||+++||+||||.
T Consensus 638 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~ 716 (1046)
T 4f1n_A 638 RGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVV 716 (1046)
T ss_dssp ----------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 33323333333333333444432111231799999999745-89978999966888716899999976135781448984
Q ss_pred CC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 23---456457989999988204994323343479998832----58887999998423999999988299999706889
Q 002802 607 PM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIV----SKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWP 679 (879)
Q Consensus 607 ~~---~~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~----~~~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~~ 679 (879)
.+ +.++||++||+||||+||||+||.++.. .++++ +..||||||+||+|++++. .+||||+|||+|+
T Consensus 717 ~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d~- 790 (1046)
T 4f1n_A 717 WDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYDD- 790 (1046)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCSS-
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCC---CCCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEECC-
T ss_conf 235135427899999999998609851143665---4432344456773499853111179899--8726699999879-
Q ss_pred CCCEEEEEEEECCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 53217789996056-63111232223568624899999999999872999994499971577936799999999999999
Q 002802 680 LISRYRAAVRTQSP-KVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIE 758 (879)
Q Consensus 680 ~~~~y~~~~~~Q~~-~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf~~Vl~~Ei~~i~~ 758 (879)
.+++|.+++++|.+ ++|+|++|. +|+.++|..|++.+++.+|++|||||||||||||.+|+++|+++|++
T Consensus 791 ~~t~y~s~~~~Q~~~~~Eii~~L~---------~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~ 861 (1046)
T 4f1n_A 791 KFTQFPGDYMLQDGPGEEIITNVG---------SLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKE 861 (1046)
T ss_dssp SCCCCCEEEEEEEEETCCSCTTGG---------GGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHH
T ss_pred CCCEEEEEEEEECCCCCCHHHHHH---------HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 858583599984588724898899---------99999999999863799985799980687657789999999999999
Q ss_pred HHHHHC------CCCCCCEEEEEEEECCCCEEECCCC--------------CCCCCCCEEEECCCCCCCCCCEEECCCCC
Q ss_conf 999814------8999819999984323200103799--------------99999900750655568622258311247
Q 002802 759 ACKFLD------EKWSPKFAVIVAQKNHHTKFFQSGS--------------PDNVPPGTVVDNKVCHPRNYDFYLCAHAG 818 (879)
Q Consensus 759 a~~~~~------~~~~Pkit~Ivv~Krh~~Rff~~~~--------------~~N~~pGTvVD~~i~~p~~~dFyL~sh~~ 818 (879)
||..+. .+|+|+||||||+||||+|||+.+. .+|++||||||++||||..||||||||.+
T Consensus 862 a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~ 941 (1046)
T 4f1n_A 862 SVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQA 941 (1046)
T ss_dssp HHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCC
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCC
T ss_conf 99985430034557798779999965764235114555433334432345667999972864664566741289970334
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5433378547999658999988999999985203310389865022799999998832
Q 002802 819 MIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 819 ~~GTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~~YA~~~a~~~ 876 (879)
+|||+|||||+||+||+++++|+||+|||+|||+|+|||++||+||||||||++|.|-
T Consensus 942 ~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~ 999 (1046)
T 4f1n_A 942 LKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRA 999 (1046)
T ss_dssp CSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7776657379999679999989999999998655335178862557899999999999
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=809.94 Aligned_cols=648 Identities=16% Similarity=0.165 Sum_probs=483.1
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCEEE
Q ss_conf 99468787851665028999966422799987881347999999999962102898545409860565378899961489
Q 002802 66 LLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFT 145 (879)
Q Consensus 66 L~tN~F~i~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~g~~~~yDG~k~lfS~~~Lp~~~~~~~ 145 (879)
-+.|.|+++..+.|..|-- +++ ..++. |..--++-|+++-. .+...|-.+.-.|..++...+.+-..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~----~~~--~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (706)
T 1yvu_A 5 ALLNLYRIEYRPKDTTFTV----FKP--THEIQ-KEKLNKVRWRVFLQ------TGLPTFRREDEFWCAGKVEKDTLYLT 71 (706)
T ss_dssp CEESEEEEEECCSSCEEBC----CEE--SSCCC-HHHHHHHHHHHHHH------HCSCEEEETTEEEESSCCTTCCCEEE
T ss_pred HHHHHHEEEECCCCCEEEE----ECC--HHHHH-HHHHHHEEEEEEEE------CCCCCCCCCCCCEECCCCCCCEEEEE
T ss_conf 6535442551367733676----345--07887-87641201476510------17865201531034352013248998
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99615545578999999999999988632336889997399999973100668899997279886747899999999960
Q 002802 146 VVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQ 225 (879)
Q Consensus 146 v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~iq~Ldiilr~ 225 (879)
.. ++. +|+|++++++... |. ....+++|+++.+|+.
T Consensus 72 --~~-------------------------------~~~--~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~ 107 (706)
T 1yvu_A 72 --LS-------------------------------NGE--IVELKRVGEEEFR-------GF--QNERECQELFRDFLTK 107 (706)
T ss_dssp --EC-------------------------------SSS--CEEEEECCCEECC-------CC--SCHHHHHHHHHHHHHH
T ss_pred --CC-------------------------------CCC--EEEEEEEEEEECC-------CC--CCCHHHHHHHHHHHHH
T ss_conf --17-------------------------------997--8999999886156-------78--9998999999999997
Q ss_pred HHHHCCCEECCCCCCCCCCCCCCC-CCCCEEEEECCEEEEEEEC-CCEEEEEECCCCEEECCCHHHHHHHHHCCCCCCCC
Q ss_conf 132207300243223799988313-7997787421268999708-90368673240011047608899997139999880
Q 002802 226 HAAKQGCLLVRQSFFHNDPKNFAD-VGGGVLGCRGFHSSFRTTQ-GGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFS 303 (879)
Q Consensus 226 ~~~~~~~~~~g~~fF~~~~~~~~~-l~~G~e~~~Gf~~Svr~~~-~gl~LniDvs~~~f~~~~~l~d~l~~~~~~~~~~~ 303 (879)
. +....++||.||++..+...+ -..++|+|+||.+||+..+ ++++||+|++|+ |.+..+|+|+|.++... +
T Consensus 108 ~--~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~~~~~--~-- 180 (706)
T 1yvu_A 108 T--KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLERNDFN--P-- 180 (706)
T ss_dssp T--CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHHCCCC--C--
T ss_pred C--CCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHHHHHC--C--
T ss_conf 5--774755172445833562056778767981686889885267875999973404-55665399999972304--6--
Q ss_pred HHHHHHHHHHCCCEEEEEECCCEE--EEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCC------
Q ss_conf 339999977367399975279329--99405-865533333102258987898875431333989998635974------
Q 002802 304 IDWAKAKRTLKNLRIKTITSNQEY--KITGL-SEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID------ 374 (879)
Q Consensus 304 ~~~~k~~~~Lkgl~V~~~~~nr~~--kI~gl-s~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~------ 374 (879)
-.+..+|+|+.| +|.++ .+...+..+|.. + .++| ||+++|++.
T Consensus 181 ------------~~~~~~y~n~ty~~riddi~~~~~~P~~~f~~-g------------~~iS---Yyk~~~~~~q~ll~~ 232 (706)
T 1yvu_A 181 ------------KRIRVKPIGIDFVGRVQDVFKAKEKGEEFFRL-C------------MERS---THKSSKKAWEELLKN 232 (706)
T ss_dssp ------------TTCEEEETTCCCCEEEEEEEESTTSCHHHHHH-H------------HHTC---SSHHHHHHHHHHHHC
T ss_pred ------------HHHHHHCCCCEECCCCCCCCCCCCCCCEEECC-C------------CCCC---EEECCCCCCHHHHHC
T ss_conf ------------56886432556333657400468895138428-9------------9755---585146754144430
Q ss_pred --CCCCCCCCEEECCCCCC--CCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf --46799997363289999--80330451278477422356999999999999418959999999999660169995334
Q 002802 375 --LRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPML 450 (879)
Q Consensus 375 --L~~~p~lP~i~vg~~~~--~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~s~~~P~eR~~~i~~~~~~~~~~~~~~L 450 (879)
.+. +.+|++. .+++. +.++++ ||++ .+|++.|+++|+++++++|++|++.|+++++.. ++.|
T Consensus 233 r~~~~-~~~~~~v-~~~~~~p~~lL~p-lc~~-------t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L 298 (706)
T 1yvu_A 233 RELRE-KAFLVVL-EKGYTYPATILKP-VLTY-------ENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKAL 298 (706)
T ss_dssp HHHHH-HCEEEEE-TTSCEEEGGGEEE-CCCC-------C------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHH
T ss_pred CCCCC-CCCEEEE-CCCCCCCCEEECC-CCCC-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHH
T ss_conf 24456-7724884-2688778644300-1213-------799999999999998259999999999999998----9999
Q ss_pred CCEEEEEECCEEEEEEEECCCCCEECCCCC--CCCC-CCCCCCCCCCEEECCCCCCE---EEEEEECCCH-HHHHHHHHH
Q ss_conf 412378614603655477089921138984--4599-88854447842105665313---8999948800-099999999
Q 002802 451 RSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSP-RNGRWNFNNKKLVQPTKIER---WAVVNFSARC-DIRSLVRDL 523 (879)
Q Consensus 451 ~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~--~~~~-~~g~Wn~~~~~f~~p~~i~~---Wavv~~~~~~-~~~~f~~~L 523 (879)
++|||+|+++|++|+||||++|+|.+++|. ...+ .+|.|++++ +|+.++.++. |.++ +..+. ++..|++.|
T Consensus 299 ~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~lW~~i-~~~~~~~~~~f~~~L 376 (706)
T 1yvu_A 299 RDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELCR-PFVKKDVLSVEIISVSV-YKKLEWRKEEFLKEL 376 (706)
T ss_dssp HTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHCC-CCCSCSEEEEEEEEEEC------CHHHHHHHHH
T ss_pred HHCCCEECCCEEECCCEECCCCEEECCCCCCCEECCCCCCCCCCCC-CEECCCCCCCCEEEEEE-ECCHHHHHHHHHHHH
T ss_conf 9769888886422136873895066478974302368754300037-41114325643389998-166168999999999
Q ss_pred HHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCC-------CCCCHHHHHHHH
Q ss_conf 99976239645799510106953348980578999999998539--999829999928999-------986447799974
Q 002802 524 IKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKL--PGAPQFLLCLLPERK-------NSDLYGPWKRKN 594 (879)
Q Consensus 524 ~~~~~~~G~~i~~P~~i~~~~~~~~~~~~~~~ve~~~~~~~~~~--~~~~~~il~ilp~~k-------~~~~Y~~iK~~~ 594 (879)
.++|+.+||.+..|..+.... ++++.+++.+.... ...+++++||+|+ + +.+.|+.||++|
T Consensus 377 ~~~~~~~G~~i~~p~~~~~~~---------~~~~~~~~~l~~~~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~ 446 (706)
T 1yvu_A 377 INFLKNKGIKLKIKGKSLILA---------QTREEAKEKLIPVINKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKREL 446 (706)
T ss_dssp HHHHHTTTCEEEEEEEEEEEC---------SSTTHHHHHHHHHHTTTSSCSEEEEEEC-----------CHHHHHHHHHH
T ss_pred HHHHHHCCCEECCCCCCCCCC---------HHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCCCCCCCCCHHHHHHHHH
T ss_conf 999987496206874223340---------01999999999875005899589999777-44445556754799999998
Q ss_pred HCCCCCEEEEEECCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
Q ss_conf 2023924456402345----645798999998820499432334347999883258887999998423999999988299
Q 002802 595 LADFGIVTQCMAPMRV----NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIA 670 (879)
Q Consensus 595 ~~~~gI~TQci~~~~~----~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSia 670 (879)
+ +.||+||||..+++ +.|++.||++|||+||||+||.++.. ...+|||||+||+|++.++ ..||++
T Consensus 447 ~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~ 516 (706)
T 1yvu_A 447 L-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAV 516 (706)
T ss_dssp H-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEE
T ss_pred H-CCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECCC--------CCCCEEEEEEEEECCCCCC-CCCEEE
T ss_conf 5-28985499801021665307899999999999849861560258--------8885599999886168788-885699
Q ss_pred EEEEECCC-CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 99970688-95321778999605663111232223568624899999999999872999994499971577936799999
Q 002802 671 AVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVL 749 (879)
Q Consensus 671 avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf~~Vl 749 (879)
|+|+|+|. ..+++|.+....|. ++|++++ ++..+|..| +..++.+|++||||||||||
T Consensus 517 g~vas~d~~g~~~~~~~~~~~q~-~~ei~~~------------l~~~~l~~~-~~~~~~~P~rIIiyRDGVse------- 575 (706)
T 1yvu_A 517 AFTKIFNSKGELVRYYLTSYPAF-GEKLTEK------------AIGDVFSLL-EKLGFKKGSKIVVHRDGRLY------- 575 (706)
T ss_dssp EEEEEECTTSCEEEEEEEEECSC-TTHHHHH------------HHHHHHHHH-HHTTCCTTCEEEEEESSCCC-------
T ss_pred EEEEEECCCCCEEEEEEEECCCC-CCHHHHH------------HHHHHHHHH-HHHCCCCCCEEEEEECCCCC-------
T ss_conf 99999858998899998733666-4269999------------999999999-98649998379999688885-------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCCCCEEECCCCC-CCCCCCCCEE
Q ss_conf 999999999999814899981999998432320010379999999900750655568622258311247-5433378547
Q 002802 750 NVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAG-MIGTSRPTHY 828 (879)
Q Consensus 750 ~~Ei~~i~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~~-~~GTarPthY 828 (879)
++|+++|++||.. |.|++|||+|+||||+|||+.+ ||+||||||. ..+||||++|.+ +|||+|||||
T Consensus 576 ~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~---np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY 643 (706)
T 1yvu_A 576 RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE---KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKV 643 (706)
T ss_dssp HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC---SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEE
T ss_pred HHHHHHHHHHHHH----CCCCEEEEEEEECCCEEEECCC---CCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEE
T ss_conf 8999999999997----2994799999704671587889---9997389972-----79769999447766788788799
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999658999988999999985203310389865022799999998832
Q 002802 829 HVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY 876 (879)
Q Consensus 829 ~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~~YA~~~a~~~ 876 (879)
+|++++. ++|+||+|||+|||+|+|||++||+|||+||||++|.+-
T Consensus 644 ~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~ 689 (706)
T 1yvu_A 644 RKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLM 689 (706)
T ss_dssp EEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9991899--999999999998986016489960475899999999999
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=753.09 Aligned_cols=658 Identities=14% Similarity=0.104 Sum_probs=479.2
Q ss_pred EEEEEEEEEEEEEC-CCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCE--EEECCCCCC
Q ss_conf 89999468787851-665028999966422799987881347999999999962102898545409860--565378899
Q 002802 63 RISLLTNHFKVNVT-NVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKS--LFTVGPLPR 139 (879)
Q Consensus 63 ~i~L~tN~F~i~~~-~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~g~~~~yDG~k~--lfS~~~Lp~ 139 (879)
+..|.+|||++... .++ .+|||+|++ +|+++.+ ....++..+... + | .++|||. . ||++.+|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~----~-g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE----N-V-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH----T-T-EEEEETT-TTEEEESSCCCC
T ss_pred CEEEEEEEEEEECCCCCC-EEEEEEEEC----CCHHHHH-HHHHHHHHHHHH----C-C-CEEECCC-CEEEECCCEECC
T ss_conf 069994068873246887-059998623----8758889-999899987865----3-7-1896475-203222532146
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 96148999615545578999999999999988632336889997399999973100668899997279886747899999
Q 002802 140 NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVL 219 (879)
Q Consensus 140 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~iq~L 219 (879)
+ +..+.++++.+++++ +|++
T Consensus 70 ~-----------------------------------------~~~~~~~~~~~~~~~-------------------~~~~ 89 (771)
T 1u04_A 70 E-----------------------------------------GEFIPEGEISFSELR-------------------NDYQ 89 (771)
T ss_dssp S-----------------------------------------SCCEEEEEECGGGSC-------------------HHHH
T ss_pred C-----------------------------------------CCEEEEEEEECCEEC-------------------HHHH
T ss_conf 8-----------------------------------------973789999904402-------------------9999
Q ss_pred HHHHHHHHHHCC-----CEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCEEEEEECCCCEEECCCHHHHHHHH
Q ss_conf 999960132207-----300243223799988313799778742126899970890368673240011047608899997
Q 002802 220 DIILRQHAAKQG-----CLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (879)
Q Consensus 220 diilr~~~~~~~-----~~~~g~~fF~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~~~~~l~d~l~~ 294 (879)
|+++|..+...+ ...+||+||++ . .+ +...+|.|+.+|||..+++++|++|++|++ .+..+|.|+|.+
T Consensus 90 n~i~r~~l~~~~~~~~~l~~~~r~~~~~--~---~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~ 162 (771)
T 1u04_A 90 SKLVLRLLKENGIGEYELSKLLRKFRKP--K---TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNK 162 (771)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHTTTSCC--E---EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCC--C---CC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHH
T ss_conf 9999999987462058899976620798--3---34-662799873466885378438999866567-555679999999
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCEEEEE--------E--CCCEEEEEECCCCCCCCC--CC---CCCCCCCCCCCCCCCCE
Q ss_conf 139999880339999977367399975--------2--793299940586553333--31---02258987898875431
Q 002802 295 NQNVRDPFSIDWAKAKRTLKNLRIKTI--------T--SNQEYKITGLSEKLCKEQ--MF---SLKQKNVKDDDGEVQEL 359 (879)
Q Consensus 295 ~~~~~~~~~~~~~k~~~~Lkgl~V~~~--------~--~nr~~kI~gls~~~a~~~--~F---~~~~~~~~~~~~~~~~~ 359 (879)
.. .......+...|.-|.+. | +++.|++.. ..+..+.. +| ..+++ + .
T Consensus 163 ~~-------~~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~-------~---~ 224 (771)
T 1u04_A 163 DP-------KELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERY-------W---N 224 (771)
T ss_dssp CH-------HHHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHH-------C---C
T ss_pred HH-------HHHHHHHHHCCCCEEEEECCCCCEEEEECCCCEEECCC-CCCCCCCCHHHEECEEECCC-------C---C
T ss_conf 99-------99998887356737853113444268604662441588-51237898544013021377-------8---8
Q ss_pred EEEHHHHHHHHCCCCCCCCCCCCEEECCC-------CCCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 33398999863597446799997363289-------99980330451278477422356999999999999418959999
Q 002802 360 EITVYDYFVNNRNIDLRYSGDLPCINVGK-------PKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERM 432 (879)
Q Consensus 360 ~iTV~eYf~~~Y~i~L~~~p~lP~i~vg~-------~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~s~~~P~eR~ 432 (879)
++++.+||.++|+| ++ .+||++.... ..+.+||.||||.+++. ..+++....++|..+++..|++|.
T Consensus 225 ~~~~~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~ 298 (771)
T 1u04_A 225 TPEAKLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERK 298 (771)
T ss_dssp SHHHHHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHH
T ss_pred CCCHHHHHHHHCCC--CC-CCCCEEEECCHHHCCCCCCCEEEECHHHHHHCCC---HHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 74116878876486--76-7887698514432467889603642476533674---356668999999998777989999
Q ss_pred HHHHHHHHHC-----CCC--CCCCCCCEEEEEECCEEEEEEEECCCCCEECCCCCCCCCCCCCCC--CCCCEEECCCC--
Q ss_conf 9999996601-----699--953344123786146036554770899211389844599888544--47842105665--
Q 002802 433 SVLSNALKLS-----KYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWN--FNNKKLVQPTK-- 501 (879)
Q Consensus 433 ~~i~~~~~~~-----~~~--~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn--~~~~~f~~p~~-- 501 (879)
..+.++++++ +-+ ....|+.|| .++.. +.|.++++.+-.+.+++ ...+..+.|. +++.+++.+..
T Consensus 299 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p 374 (771)
T 1u04_A 299 ELLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVP 374 (771)
T ss_dssp HHHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCC-CCCCCCCCCCCCEEECC--CCCCCCCCCCHHHCCCCCEECCCCH
T ss_conf 99999999861544307988999975554-11767-50025456645326327--6777667760553778511046542
Q ss_pred --CC------EEEEEEECCCHHHHHHH---------HHHHHHHHHCCCC---------CCCCCCEECCCCCC-C-CCCCH
Q ss_conf --31------38999948800099999---------9999997623964---------57995101069533-4-89805
Q 002802 502 --IE------RWAVVNFSARCDIRSLV---------RDLIKCGEMKGIL---------IDQPFDVFEESPQF-R-RSSPV 553 (879)
Q Consensus 502 --i~------~Wavv~~~~~~~~~~f~---------~~L~~~~~~~G~~---------i~~P~~i~~~~~~~-~-~~~~~ 553 (879)
++ .|.+++-.....+.+|+ ..|.+.++.+|+. +..|...+...+.. . .....
T Consensus 375 ~~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~ 454 (771)
T 1u04_A 375 EKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSD 454 (771)
T ss_dssp THHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSH
T ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf 65504355535999957716889988888766677899998753223101103566422578733346751431565534
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC------------HHHHHHHHH
Q ss_conf 78999999998539-99982999992899998644779997420239244564023456------------457989999
Q 002802 554 VRVEKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVN------------DQYLTNVLL 620 (879)
Q Consensus 554 ~~ve~~~~~~~~~~-~~~~~~il~ilp~~k~~~~Y~~iK~~~~~~~gI~TQci~~~~~~------------~q~~~Ni~l 620 (879)
+.++.+++.+.+.+ +..++|++++++..++.+.|+.||++| .+.||+||||..+++. .+++.||++
T Consensus 455 ~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIal 533 (771)
T 1u04_A 455 KGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLF 533 (771)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 779999999997515789878999975898866689999998-5489663998435006765443323132899999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 98820499432334347999883258887999998423999999988299999706889532177899960566311123
Q 002802 621 KINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDS 700 (879)
Q Consensus 621 KiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~ 700 (879)
|||+||||.||.++. | ..+|||||+||+|++++. ..++++|+|+|.++ ..++|.+....|.++ |+++
T Consensus 534 qIn~KLGG~pW~L~~------p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~-E~i~- 600 (771)
T 1u04_A 534 QVLSKLGVKYYVLDY------R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRG-ESVD- 600 (771)
T ss_dssp HHHHHTTCBCCEESC------C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSS-SSCC-
T ss_pred HHHHHHCCCCEEECC------C---CCCEEEEEEEEECCCCCC-CCEEEEEEEECCCC-CEEEEEEEEEECCCC-CEEC-
T ss_conf 999985983326068------9---998799999987479899-74699999977999-789998887303776-3773-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 22235686248999999999998729999944999715779367999999999999999998148999819999984323
Q 002802 701 LFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNH 780 (879)
Q Consensus 701 l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf~~Vl~~Ei~~i~~a~~~~~~~~~Pkit~Ivv~Krh 780 (879)
+ +.|++++|.+|++.+++.+|++|||||||+ |+++|+++|++||... .|++|||+|+|||
T Consensus 601 l---------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh 660 (771)
T 1u04_A 601 M---------NEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNH 660 (771)
T ss_dssp H---------HHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCC
T ss_pred H---------HHHHHHHHHHHHHHHCCCCCCEEEEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECC
T ss_conf 9---------999999999999970799997799991888-------8789999999999855----9988999999457
Q ss_pred CCEEECCCCCCCCCCCEEEECCCCCCCCCCEEECCCC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHCC
Q ss_conf 2001037999999990075065556862225831124--75433378547--9996589999----88999999985203
Q 002802 781 HTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHA--GMIGTSRPTHY--HVLFDEIGFS----SDELQELVHSLSYV 852 (879)
Q Consensus 781 ~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~--~~~GTarPthY--~Vl~de~~~~----~d~lq~lt~~Lc~~ 852 (879)
|+|||. |.+|||||| . ||||+||. +.|||+||||| +|++|+++++ +|+||++||+|||+
T Consensus 661 ~tRfF~-----~~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchl 727 (771)
T 1u04_A 661 PVRAFA-----NMKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRL 727 (771)
T ss_dssp CCCBSS-----CSCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTC
T ss_pred CEEEEC-----CCCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 515646-----999804996-------8-889983454588888887899978875278878777899999999986550
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 310389-86502279999999883
Q 002802 853 YQRSTT-AISVGNLKNLMLVVLAS 875 (879)
Q Consensus 853 y~r~t~-svsipaP~~YA~~~a~~ 875 (879)
|+||++ +||+||||||||++|..
T Consensus 728 yyn~~~~svrvPAP~~YAhklA~l 751 (771)
T 1u04_A 728 NYGSISADMRLPAPVHYAHKFANA 751 (771)
T ss_dssp CTTCSSCCCCSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 145799996478127999999999
No 5
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=744.38 Aligned_cols=363 Identities=31% Similarity=0.492 Sum_probs=315.9
Q ss_pred CCCCEEEC-CCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47842105-665313899994880---00999999999997623964579951010695334898057899999999853
Q 002802 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (879)
Q Consensus 491 ~~~~~f~~-p~~i~~Wavv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~P~~i~~~~~~~~~~~~~~~ve~~~~~~~~~ 566 (879)
+++++|++ ++++++|++++++.+ ..+..|++.|.+.++.+||.+..|....... .+.+.+..+ .++++...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC---CCCCHHHHH--HHHHHHCC
T ss_conf 9888862699727779999912777879999999999999987697717998764103---778658887--99875045
Q ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999829999928999986447799974202392445640234---5645--7989999988204994323343479998
Q 002802 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (879)
Q Consensus 567 ~~~~~~~il~ilp~~k~~~~Y~~iK~~~~~~~gI~TQci~~~~---~~~q--~~~Ni~lKiNaKLGG~n~~l~~~~~~~~ 641 (879)
..++|+|||+|+ ++.++|+.||++|+.+.||+||||..++ .++| +++||+||||+||||+||.++. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCCEEEEEECC-CCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898389999788-98348999999870156854189726672476628999999999999984992402366----64
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8325888799999842399---99--999882999997068895321778999605-66311123222356862489999
Q 002802 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGIIR 715 (879)
Q Consensus 642 p~~~~~~tmiiG~DVsH~~---~~--~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~i~ 715 (879)
|++.+.+|||||+||+||+ +| ....||+||+|||+|. ..++|.+.+++|. +++|+|++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCHHHHHHH---------HHHHH
T ss_conf 545778779998887525655677767899979999873499-96744027898677644489999---------99999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCEEECCCC---
Q ss_conf 99999998--72999994499971577936799999999999999999814899-9819999984323200103799---
Q 002802 716 ELLLDFYT--SSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKW-SPKFAVIVAQKNHHTKFFQSGS--- 789 (879)
Q Consensus 716 e~L~~f~~--~~~~~~P~~IIiyRDGvsegqf~~Vl~~Ei~~i~~a~~~~~~~~-~Pkit~Ivv~Krh~~Rff~~~~--- 789 (879)
++|..|++ .+++.+|++|||||||||||||.+|+++|+++|++||..++.+| +|+||||||+||||+|||+.+.
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~ 299 (437)
T 2yhb_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI 299 (437)
T ss_dssp HHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCCCCCC
T ss_conf 99999986554337998638999177566779999999999999999985043679877999997145532546775433
Q ss_pred ---CCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf ---9999990075065556862225831124754333785479996589------9998899999998520331038986
Q 002802 790 ---PDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEI------GFSSDELQELVHSLSYVYQRSTTAI 860 (879)
Q Consensus 790 ---~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~~GTarPthY~Vl~de~------~~~~d~lq~lt~~Lc~~y~r~t~sv 860 (879)
.+||+||||||++||||.+||||||||.++|||+|||||+||+||+ ++++|+||+|||+|||+|+|||++|
T Consensus 300 ~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sV 379 (437)
T 2yhb_A 300 HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAV 379 (437)
T ss_dssp ----------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC--------
T ss_pred CCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 44668999855715644677773289973312104687638999937854323579998999999999877520315887
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 502279999999883
Q 002802 861 SVGNLKNLMLVVLAS 875 (879)
Q Consensus 861 sipaP~~YA~~~a~~ 875 (879)
|+|||+||||++|.|
T Consensus 380 sipaP~yYAh~~a~R 394 (437)
T 2yhb_A 380 SICPPAYYADLVCDR 394 (437)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 748789999999999
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=649.31 Aligned_cols=635 Identities=15% Similarity=0.165 Sum_probs=454.7
Q ss_pred CEEEEEEEEEEEE-ECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCC
Q ss_conf 7899994687878-516650289999664227999878813479999999999621028985454098605653788999
Q 002802 62 QRISLLTNHFKVN-VTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRN 140 (879)
Q Consensus 62 ~~i~L~tN~F~i~-~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~g~~~~yDG~k~lfS~~~Lp~~ 140 (879)
..+.|.-|-|.+. +...+..+|.|.|.+.+ +.+ .+.-..++..++.. + |...+==| +.+.|-.+ |..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~----~-~~~~~~~~-~~~~~~~~-~~~ 72 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDP----PPG-REEVYPLLAQVARR----A-GGVTVRMG-DGLASWSP-PEV 72 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEES----CCC-TTTHHHHHHHHHHH----T-CSSEEEET-TEEEESSC-TTT
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCC----CCC-CCHHHHHHHHHHHH----H-CCEEEEEC-CCEECCCC-CHH
T ss_conf 5205897500345488534850589985079----988-41477899999987----3-87478632-74000467-055
Q ss_pred -CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHH---
Q ss_conf -6148999615545578999999999999988632336889997399999973100668899997279886747899---
Q 002802 141 -KLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAF--- 216 (879)
Q Consensus 141 -~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~i--- 216 (879)
.+|-+|.- ..+...+.+.-.-...++...- ..++|+
T Consensus 73 ~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 112 (685)
T 3ho1_A 73 LVLEGTLAR------------------------------MGQTYAYRLYPKGRRPLDPKDP----------GERSVLSAL 112 (685)
T ss_dssp SCCEEEEEC------------------------------SSCEEEEEEEEEEECCCCTTSH----------HHHHHHHHH
T ss_pred HHCCCHHCC------------------------------CCCCCCEEEEECCCCCCCCCCH----------HHHHHHHHH
T ss_conf 410220002------------------------------3688663653056645788986----------788999999
Q ss_pred --HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEC-CCEEEEEECCCCEEECCCHHHHHHH
Q ss_conf --9999999601322073002432237999883137997787421268999708-9036867324001104760889999
Q 002802 217 --RVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQ-GGLSLNIDVSTTMIIQPGPVVDFLI 293 (879)
Q Consensus 217 --q~Ldiilr~~~~~~~~~~~g~~fF~~~~~~~~~l~~G~e~~~Gf~~Svr~~~-~gl~LniDvs~~~f~~~~~l~d~l~ 293 (879)
..|+-.|++. .+...-|.-.+-.. . .-|.|.|+.+|+.-.|.++. +++.|.+|..+.. +.+.++.++|.
T Consensus 113 ~~~~~~~~~~~~---~~~~~~~~~~~~~~--~--~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~-~~~~~~~~~l~ 184 (685)
T 3ho1_A 113 ARRLLQERLRRL---EGVWVEGLAVYRRE--H--ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRI-LCEMSLEAWLA 184 (685)
T ss_dssp HHHHHHHHHHTC---SSSEEETTEEEEEE--E--EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEE-EECSCHHHHHH
T ss_pred HHHHHHHHHHHH---HCEEECCEEEEEEC--C--CCCCCEEEECCEEEEEEECCCCCEEEEEEEHEEE-CCHHHHHHHHH
T ss_conf 999999998765---33377647898406--8--8777438843669999987788679997403011-47644999998
Q ss_pred HHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCC
Q ss_conf 71399998803399999773673999752793299940586553333310225898789887543133398999863597
Q 002802 294 ANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNI 373 (879)
Q Consensus 294 ~~~~~~~~~~~~~~k~~~~Lkgl~V~~~~~nr~~kI~gls~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i 373 (879)
.... |. .+|.++|+.++|+|.+++. ..++..|... .+|.+||++++|.+
T Consensus 185 ~~~~---------------~~-~~v~~~y~~~~~~~~~~~~-~~p~~~~l~~--------------~~s~~~y~~~k~~~ 233 (685)
T 3ho1_A 185 QGHP---------------LP-KRVRNAYDRRTWELLRLGE-EDPKELPLPG--------------GLSLLDYHASKGRL 233 (685)
T ss_dssp HSCC---------------CC-SEEEESSSCCEECCCEEEC-CCTTCC--------------------CSTTTTTTTSTT
T ss_pred HCCC---------------CC-HHHHHHCCCCEEEEEECCC-CCCHHEECCC--------------CCCHHHHHHHCCCC
T ss_conf 1798---------------32-7776431662489863366-8933234578--------------86599997542653
Q ss_pred CCCCCCCCCEEE-CCCCC---C-----CCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 446799997363-28999---9-----80330451278477422356999999999999418959999999999660169
Q 002802 374 DLRYSGDLPCIN-VGKPK---R-----PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKY 444 (879)
Q Consensus 374 ~L~~~p~lP~i~-vg~~~---~-----~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~s~~~P~eR~~~i~~~~~~~~~ 444 (879)
+. -++|.|. +.+.+ + .+||.|||| +.++ ++.+++ .+++..|++|++.+.++.+.
T Consensus 234 --~~-~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~l-------~~~~~~---~~trlsP~~R~~~l~~~~~~--- 296 (685)
T 3ho1_A 234 --QG-REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LEDL-------HEEEGS---LALSLPWEERRRRTREIASW--- 296 (685)
T ss_dssp --TT-SCCCSEEEECSCC---CCEEEETTSEEEECC-TTTT-------SSCSSC---CCCCCCHHHHHHHHHHHHHH---
T ss_pred --CC-CCCCEEEEEECCCCCCCCCEEEEEEECHHHH-HHHH-------HHHHHH---CCCCCCHHHHHHHHHHHHHH---
T ss_conf --34-6786599995544578733244256322767-8777-------666640---62567989999999999999---
Q ss_pred CCCCCCCCEEEEEECCEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC-HHHHHHHHHH
Q ss_conf 995334412378614603655477089921138984459988854447842105665313899994880-0099999999
Q 002802 445 DNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-CDIRSLVRDL 523 (879)
Q Consensus 445 ~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~~~~f~~p~~i~~Wavv~~~~~-~~~~~f~~~L 523 (879)
+++.|||+ +++|++++||+||||+| +|+.. + .+.|++.+.+|+.+... .|++++++.. ..+..|++.|
T Consensus 297 ----i~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~-~---~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L 365 (685)
T 3ho1_A 297 ----IGRRLGLG-TPEAVRAQAYRLSIPKL-MGRRA-V---SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRAL 365 (685)
T ss_dssp ----HHHTTCSC-CCEEEEEEEEECCCCCE-ESSSB-C---SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHH
T ss_pred ----HHHHCCCC-CCCCCEEEEEECCHHHH-CCCCC-C---CCCHHHCCCCCEECCCC-EEEEEECCCCHHHHHHHHHHH
T ss_conf ----88853999-89711687788388995-58997-5---78621114753113673-599996267267899999999
Q ss_pred HHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 99976239645799510106953348980578999999998539999829999928999986447799974202392445
Q 002802 524 IKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQ 603 (879)
Q Consensus 524 ~~~~~~~G~~i~~P~~i~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~il~ilp~~k~~~~Y~~iK~~~~~~~gI~TQ 603 (879)
.+.++.+||.+..|... +.++. .......+++..+ .++|+|+||+|+ ++.+.|+.||+.| .+.||+||
T Consensus 366 ~~va~~~G~~i~~~~~~--~~~~d-----~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQ 433 (685)
T 3ho1_A 366 LRAFGASGASLRLHTLH--AHPSQ-----GLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQ 433 (685)
T ss_dssp HHHHHSSSSCEEEEECC--CCGGG-----THHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHHHHCCCEECCCEEE--CCCCC-----HHHHHHHHHHHHH---CCCCEEEEEECC-CCCCHHHHHHHHH-HCCCCCCE
T ss_conf 99887679376355110--47773-----6999999998642---399889999779-9954789999998-63997638
Q ss_pred EEE-C-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEE--CCCC
Q ss_conf 640-2-34564579899999882049943233434799988325888799999842399999998829999970--6889
Q 002802 604 CMA-P-MRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSS--RHWP 679 (879)
Q Consensus 604 ci~-~-~~~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSiaavVaS--~d~~ 679 (879)
||. . .+.+.++++||++|||+||||.||.++. | ..++||||+||+|++. .++++++++ .|.
T Consensus 434 cV~~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P---~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg- 498 (685)
T 3ho1_A 434 ILNVPLREEERHRWENALLGLLAKAGLQVVALSG------A---YPAELAVGFDAGGRES-----FRFGGAACAVGGDG- 498 (685)
T ss_dssp EEESSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------C---CSCSEEEEEEEEETTE-----EEEEEEEEEECC---
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECC------C---CCCEEEEEEEEECCCC-----CCCCEEEEEEECCC-
T ss_conf 9961225640719999999998873983578568------9---9986999999973898-----96123999997888-
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 5321778999605663111232223568624899999999999872999994499971577-936799999999999999
Q 002802 680 LISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGV-SESQFNQVLNVELNQIIE 758 (879)
Q Consensus 680 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGv-segqf~~Vl~~Ei~~i~~ 758 (879)
...+|. ..+.|....+.++++ ..|+.++|..|++.+ +.+|++|||||||| +|+||. +|++
T Consensus 499 ~~~~~~-~~~~Q~~e~l~~~~L---------~~~l~eaL~~Y~k~n-g~lP~RIIIyRDGV~se~E~~--------~I~e 559 (685)
T 3ho1_A 499 GHLLWT-LPEAQAGERIPQEVV---------WDLLEETLWAFRRKA-GRLPSRVLLLRNGRVPQDEFA--------LALE 559 (685)
T ss_dssp CCCEEE-CCCCCCSCCCHHHHH---------HHHHHHHHHHHHHHH-SSCCSEEEEEECSSSCSGGGH--------HHHH
T ss_pred CEEEEE-EEECCCCCEECHHHH---------HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHH--------HHHH
T ss_conf 877767-887267858649999---------999999999999983-899848999958989989999--------9999
Q ss_pred HHHHHCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCCCCEEECCC--CCCCCCCCCCEEEEEECCCC
Q ss_conf 9998148999819999984323200103799999999007506555686222583112--47543337854799965899
Q 002802 759 ACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAH--AGMIGTSRPTHYHVLFDEIG 836 (879)
Q Consensus 759 a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh--~~~~GTarPthY~Vl~de~~ 836 (879)
||+.+ .+++|||+|+||||+|||+.+ .++.+||+++ ..+||||++| .+.|||+|||||+ +|+++
T Consensus 560 Al~~~----~~~~t~IvVqKRh~tRfF~~n--~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~ 625 (685)
T 3ho1_A 560 ALARE----GIAYDLVSVRKSGGGRVYPVQ--GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGD 625 (685)
T ss_dssp HHHHT----TCEEEEEEEESSCCCCEEESS--SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEEC
T ss_pred HHHHC----CCCEEEEEEEECCCCEEECCC--CCCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCC
T ss_conf 99861----998799999916871374689--8998759980------7897899996688876678619999--89899
Q ss_pred CCHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf 998899999998520331038-986502279999999883
Q 002802 837 FSSDELQELVHSLSYVYQRST-TAISVGNLKNLMLVVLAS 875 (879)
Q Consensus 837 ~~~d~lq~lt~~Lc~~y~r~t-~svsipaP~~YA~~~a~~ 875 (879)
+++|+||++||+|||+|+||| +++|+||||||||++|+.
T Consensus 626 ~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~ 665 (685)
T 3ho1_A 626 TPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKE 665 (685)
T ss_dssp SCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8999999999997775116899999867578999999999
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=604.30 Aligned_cols=321 Identities=29% Similarity=0.449 Sum_probs=276.1
Q ss_pred CCCCEEEC-CCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47842105-665313899994880---00999999999997623964579951010695334898057899999999853
Q 002802 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (879)
Q Consensus 491 ~~~~~f~~-p~~i~~Wavv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~P~~i~~~~~~~~~~~~~~~ve~~~~~~~~~ 566 (879)
+++++|++ ++++++|++++++.+ .++..|++.|.+.++.+||.+..|....... .+.+.+..+ .++++...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~--~~~~~~~~ 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGSEKEF--FAKVKELM 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC---CCCCHHHHH--HHHHHHCC
T ss_conf 9888851699727789999902777879999999999999987697747998754103---778638785--89875045
Q ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999829999928999986447799974202392445640234---5645--7989999988204994323343479998
Q 002802 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (879)
Q Consensus 567 ~~~~~~~il~ilp~~k~~~~Y~~iK~~~~~~~gI~TQci~~~~---~~~q--~~~Ni~lKiNaKLGG~n~~l~~~~~~~~ 641 (879)
..++|+|||||+ ++.++|+.||++|+.++||+||||..++ .++| |++||+||||+||||+||.++. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~ 149 (388)
T 2yha_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (388)
T ss_dssp --HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CC
T ss_pred --CCCEEEEEEECC-CCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898299999789-98348999999871057975089834560576748999999999999971893312256----65
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8325888799999842399---99--999882999997068895321778999605-66311123222356862489999
Q 002802 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGIIR 715 (879)
Q Consensus 642 p~~~~~~tmiiG~DVsH~~---~~--~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~i~ 715 (879)
|++.+.+|||||+||+||+ +| ....||+||+|||+|. ..++|.+.+++|. +++|+|++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCCCHHHHH---------HHHHH
T ss_conf 545778779998777515656777767899879998777599-97779789998688862579999---------99999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCEEECCCCCCC
Q ss_conf 99999998--72999994499971577936799999999999999999814899-9819999984323200103799999
Q 002802 716 ELLLDFYT--SSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKW-SPKFAVIVAQKNHHTKFFQSGSPDN 792 (879)
Q Consensus 716 e~L~~f~~--~~~~~~P~~IIiyRDGvsegqf~~Vl~~Ei~~i~~a~~~~~~~~-~Pkit~Ivv~Krh~~Rff~~~~~~N 792 (879)
++|..|++ .+++.+|++|||||||||||||.+|+++|+++|++||..++.+| +|+||||||+||
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr------------- 286 (388)
T 2yha_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG------------- 286 (388)
T ss_dssp HHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-------------
T ss_conf 9999998756543789752899946867257999999999999999998514467986799996466-------------
Q ss_pred CCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 9990075065556862225831124754333785479996589------9998899999998520331038986502279
Q 002802 793 VPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEI------GFSSDELQELVHSLSYVYQRSTTAISVGNLK 866 (879)
Q Consensus 793 ~~pGTvVD~~i~~p~~~dFyL~sh~~~~GTarPthY~Vl~de~------~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~ 866 (879)
+|||||+||+||+ ++++|+||+|||+|||+|+|||++||+|||+
T Consensus 287 ------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~ 336 (388)
T 2yha_A 287 ------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPA 336 (388)
T ss_dssp ----------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHH
T ss_pred ------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf ------------------------------68826999827864334579999999999999977753325887757589
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998832
Q 002802 867 NLMLVVLASY 876 (879)
Q Consensus 867 ~YA~~~a~~~ 876 (879)
||||++|.|-
T Consensus 337 yYAh~~a~R~ 346 (388)
T 2yha_A 337 YYADLVCDRA 346 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=435.03 Aligned_cols=348 Identities=17% Similarity=0.124 Sum_probs=246.1
Q ss_pred ECCCCCEECC--CCCCC------CCCCCCCCCCCCEEECCCCC--CEEEEEEECCCHHHHHHHHHHHHHHH---HCCCCC
Q ss_conf 7089921138--98445------99888544478421056653--13899994880009999999999976---239645
Q 002802 468 VLPAPRLKFG--NGEDF------SPRNGRWNFNNKKLVQPTKI--ERWAVVNFSARCDIRSLVRDLIKCGE---MKGILI 534 (879)
Q Consensus 468 vL~~P~i~~g--~~~~~------~~~~g~Wn~~~~~f~~p~~i--~~Wavv~~~~~~~~~~f~~~L~~~~~---~~G~~i 534 (879)
-|..|.+.|+ +|..+ .|..| +.+...+..... .+|++++...... |++.|.+... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCCEEE
T ss_conf 4478753441247973444456787899---986699746778898899997733089---9999987533128984053
Q ss_pred CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC--------CCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 79951010695334898057899999999853999982999992--------8999986447799974202392445640
Q 002802 535 DQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLL--------PERKNSDLYGPWKRKNLADFGIVTQCMA 606 (879)
Q Consensus 535 ~~P~~i~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~il~il--------p~~k~~~~Y~~iK~~~~~~~gI~TQci~ 606 (879)
..+.... ..+. +.++ +.++. ++++++||+ |+ ++.+.|. +|+ ++.+.||+||||.
T Consensus 79 ~~~~~~~---~~y~-----~~i~---~~l~~----~~~lvlvilp~~~~~~~~~-~~~~~y~-~K~-~~~~~gvptQ~I~ 140 (427)
T 2w42_A 79 HNINISE---FIYD-----SPHF---DSIKS----QVDNAIDTGVDGIMLVLPE-YNTPLYY-KLK-SYLINSIPSQFMR 140 (427)
T ss_dssp CSCEEEE---EECS-----SSSH---HHHHH----HHHHHHHHCCSEEEEEESS-CCHHHHH-HHH-HHHHTTSCEEEEE
T ss_pred CCCCCCH---HHHH-----HHHH---HHHCC----CCCEEEEEEECCCCCCCCC-CCCCHHH-HHH-HHHCCCCCCEEEE
T ss_conf 5776780---7899-----9999---97437----9979999997601045898-7750599-999-9867996758987
Q ss_pred CCCC---CHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEE--EEECCCCC
Q ss_conf 2345---6457-9899999882049943233434799988325888799999842399999998829999--97068895
Q 002802 607 PMRV---NDQY-LTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAV--VSSRHWPL 680 (879)
Q Consensus 607 ~~~~---~~q~-~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSiaav--VaS~d~~~ 680 (879)
.+++ +.++ ++||++|||+||||+||.|+.. .|. .+|||||+||+|++++ +++|+ |++.|.
T Consensus 141 ~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~~~g-- 206 (427)
T 2w42_A 141 YDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFKKDG-- 206 (427)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEECTTS--
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CCC---CCEEEEEEEEEECCCC-----CEEEEEEEECCCC--
T ss_conf 3354556505699999999978738966064567----898---9869997899876999-----5799999983899--
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 321778999605663111232223568624899999999999872999994--499971577936799999999999999
Q 002802 681 ISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPE--QIIIFRDGVSESQFNQVLNVELNQIIE 758 (879)
Q Consensus 681 ~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~--~IIiyRDGvsegqf~~Vl~~Ei~~i~~ 758 (879)
..+...+..|.+++|++++| ..++.++|..|+++.++.+|+ +|||| |||.+++++|+++|++
T Consensus 207 -~~~~~~~~~~~~~~E~~~~l---------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~ 270 (427)
T 2w42_A 207 -TMLWNEISPIVTSSEYLTYL---------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKE 270 (427)
T ss_dssp -CEEEEEECCCEEGGGHHHHH---------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHH
T ss_pred -CEEEEEEEECCCHHHHHHHH---------HHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHHH
T ss_conf -78999888427706799999---------9999999999998742789982599999------2141116999999999
Q ss_pred HHHHHCC----CCCCCEEEEEEEECCC-CEEECCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCC------C---CC
Q ss_conf 9998148----9998199999843232-0010379999999900750655568622258311247543------3---37
Q 002802 759 ACKFLDE----KWSPKFAVIVAQKNHH-TKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIG------T---SR 824 (879)
Q Consensus 759 a~~~~~~----~~~Pkit~Ivv~Krh~-~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~~G------T---ar 824 (879)
||..++. +++|+++||+|+|||| +|||..+..+||+||||||.+ .+|||++|.+.|+ + ++
T Consensus 271 a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~~~~~~ 344 (427)
T 2w42_A 271 TVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEMVTPIK 344 (427)
T ss_dssp HHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC--------CCSEEEESS------SSEEEEEEEC---------CEEEEE
T ss_pred HHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEEECC------CCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 9987154434578887799999816665466547888998996499758------9808999974523656656535889
Q ss_pred CCEEEEEEC----CCCC-CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 854799965----8999-98899999998520331038986502279999999883
Q 002802 825 PTHYHVLFD----EIGF-SSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLAS 875 (879)
Q Consensus 825 PthY~Vl~d----e~~~-~~d~lq~lt~~Lc~~y~r~t~svsipaP~~YA~~~a~~ 875 (879)
||||+|++| ++++ ++|+||++||+|||+|+|+|.++|+||||||||++|..
T Consensus 345 Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l 400 (427)
T 2w42_A 345 PLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGI 400 (427)
T ss_dssp EEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 87999996687684459899999999998547656888889837650769999999
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=205.88 Aligned_cols=131 Identities=20% Similarity=0.400 Sum_probs=114.3
Q ss_pred ECCCHHHHHHHHHCCC---CCCCCHHH--HHHHHHHCCCEEEEEE------CCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 0476088999971399---99880339--9999773673999752------79329994058655333331022589878
Q 002802 283 IQPGPVVDFLIANQNV---RDPFSIDW--AKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKD 351 (879)
Q Consensus 283 ~~~~~l~d~l~~~~~~---~~~~~~~~--~k~~~~Lkgl~V~~~~------~nr~~kI~gls~~~a~~~~F~~~~~~~~~ 351 (879)
++++||+||+.+..+. .....++| .+++++|+|++|.++| +++.|+|.||++.+|++++|.+++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g----- 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG----- 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSS-----
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECCC-----
T ss_conf 886349999999862166665575668999999974983999956877667873599810568995212897499-----
Q ss_pred CCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9887543133398999863597446799997363289999803304512784774223569999999999994189
Q 002802 352 DDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQK 427 (879)
Q Consensus 352 ~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~i~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~s~~~ 427 (879)
.++||+|||+++ |++|+| |+||||++|++++++|||||||.|++||+|+++|++.|+++||++++.+
T Consensus 77 -------~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 77 -------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp -------CEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred -------CEEEHHHHHHHC-CCCCCC-CCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf -------779899999872-997789-9987587437889758511858805895224318989999999998359
No 10
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=1.00 E-value=1 Score=205.10 Aligned_cols=124 Identities=22% Similarity=0.474 Sum_probs=110.7
Q ss_pred ECCCCEEECCCHHHHHHHHH---CCCCCCCCHHHHH--HHHHHCCCEEEEEE------CCCEEEEEECCCCCCCCCCCCC
Q ss_conf 32400110476088999971---3999988033999--99773673999752------7932999405865533333102
Q 002802 276 DVSTTMIIQPGPVVDFLIAN---QNVRDPFSIDWAK--AKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSL 344 (879)
Q Consensus 276 Dvs~~~f~~~~~l~d~l~~~---~~~~~~~~~~~~k--~~~~Lkgl~V~~~~------~nr~~kI~gls~~~a~~~~F~~ 344 (879)
+...+.|++++||+|++.+. ++.++++.++|.+ +++.||||+|+++| .+|.|+|.||+..+|.+++|++
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHCEECC
T ss_conf 64544007772099999987630366786554156899999707817999668876678875998637779754268536
Q ss_pred CCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 258987898875431333989998635974467999973632899998033045127847742235699
Q 002802 345 KQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413 (879)
Q Consensus 345 ~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~i~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls 413 (879)
++ ++|||+|||+ +|||+|+| |+||||++|++++++|||||||.|+++|||+++||
T Consensus 455 ~~------------~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 DG------------KKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp TT------------EEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CC------------EEEEHHHHHH-HCCCCCCC-CCCCEEECCCCCCCCEECCEEEEECCCCCCCCCCC
T ss_conf 99------------1888999999-71975658-99986934888788561403268648841145579
Done!