Query 002803
Match_columns 879
No_of_seqs 347 out of 2059
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 18:06:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002803.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1516-1519//hhsearch_pdb/002803hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l2p_A DNA ligase 3; DNA ligas 1.0 1 1 877.7 58.0 553 4-603 4-578 (579)
2 2hiv_A Thermostable DNA ligase 1.0 1 1 834.2 54.4 550 3-604 17-608 (621)
3 1x9n_A DNA ligase I; 5'-adenyl 1.0 1 1 824.6 45.3 555 4-605 53-671 (688)
4 2cfm_A Thermostable DNA ligase 1.0 1 1 813.1 50.8 532 7-603 1-552 (561)
5 3gde_A DNA ligase; DNA-binding 1.0 1 1 812.7 51.6 529 6-603 3-552 (558)
6 1vs0_A Putative DNA ligase-lik 1.0 1 1 489.2 28.1 307 218-592 3-309 (310)
7 1a0i_A DNA ligase; DNA replica 1.0 1 1 429.4 22.0 304 216-582 3-348 (348)
8 1fvi_A Chlorella virus DNA lig 1.0 1 1 379.8 21.4 266 222-587 1-297 (297)
9 4htp_A DNA ligase 4; helical d 1.0 1 1 354.4 19.8 216 1-217 8-239 (240)
10 3ii6_X DNA ligase 4; XRCC4, NH 1.0 1 1 331.1 20.9 208 652-862 6-223 (263)
No 1
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=877.73 Aligned_cols=553 Identities=25% Similarity=0.419 Sum_probs=468.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----CHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 877848999999999992188168999999997230899----7186668642998776755459978899999999949
Q 002803 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG 79 (879)
Q Consensus 4 ~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~----~~~~p~lrLllp~~dr~r~~yglke~~L~k~~~~~~~ 79 (879)
.++|+|++||++|++|++++++.+|+.+|++||.+|..+ .++||++|||+|+.|+ ++|||+|++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~--~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIK--TVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSC--CCCSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHC
T ss_conf 66685999999999997243758999999999984577554543299999985877568--6358868999999999979
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9947388999852205999998889999999997420--288-8998899999999999981018387999999999719
Q 002803 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRR--QGM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156 (879)
Q Consensus 80 l~~~s~d~~~L~~wk~~~~~~~~gdf~~~~~~vl~~r--~~~-~~~~lTi~eVn~~Ld~La~~~~~~~k~~~l~~ll~~~ 156 (879)
++.++ ..+++ ..||||.++..++..+ +.. .+++|||.+||+.|++||..++...+..+|..|+.+|
T Consensus 82 ~~~~~--~~~~~---------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~ 150 (579)
T 3l2p_A 82 CNPDD--MARDL---------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC 150 (579)
T ss_dssp SCHHH--HHHHG---------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred CCHHH--HHHHH---------HCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 69999--99998---------76998999999986056788889998659999999999985319588999999999869
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH---------CCCCCCCCCCCCCCCC
Q ss_conf 9978999999996310268763320244586877797230898999999962210---------1445776569745530
Q 002803 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ 227 (879)
Q Consensus 157 s~~E~kwl~riilkdl~iG~~e~~il~~~hpda~~~~~~~~dL~~V~~~L~~~~~---------~~~~~~i~~~~~~~Pm 227 (879)
|+.|+|||+|||+++||+|+++++|+.+|||+|.++|++++||+.||+.+.+... .+....+.+|.||+||
T Consensus 151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM 230 (579)
T 3l2p_A 151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM 230 (579)
T ss_dssp CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999976651265443789875877999986268799999999851223312655221123456779987784
Q ss_pred CEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCEEEEEECCCCCCCC-CHHHHHHHHHHHC-CCCCEEEECEEEE
Q ss_conf 0030269589998707982699984133789999919889999358988787-4143689998611-2353243010998
Q 002803 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV 305 (879)
Q Consensus 228 LA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~g~~v~~fSR~g~d~t~-~~~~l~~~~~~~~-~~~~~ILDGElv~ 305 (879)
||++..+++++++++.+ .|++|+||||+|+|+|++|+.+++|||||++++. ..+.+.+.+...+ ...+||||||||+
T Consensus 231 LA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~ 309 (579)
T 3l2p_A 231 LAEACKSVEYAMKKCPN-GMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL 309 (579)
T ss_dssp EEEECCCHHHHHHHCTT-CEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHCCC-CEEEEECCCCEEEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 08967888999862788-75999755858999999799999999999816736888899988875476786688758998
Q ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf 61798743455536999998413898898539999999875891256889999999998520789996100036889875
Q 002803 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (879)
Q Consensus 306 ~d~~~~~~~pFg~l~~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~~~~~~~~ 385 (879)
||+.+++++||+.++...+.. ..+.+++|++||+||+||+++++.||.+|+++|++++.+.++++.+..
T Consensus 310 ~d~~~g~~~~F~~L~~~~~~~----~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~~------- 378 (579)
T 3l2p_A 310 IDNKTGKPLPFGTLGVHKKAA----FQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSE------- 378 (579)
T ss_dssp BCTTTCCBCCGGGGSHHHHHH----CSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEECC-------
T ss_pred EECCCCCCCCHHHHHHHHHHH----CCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE-------
T ss_conf 737889636789987776654----246875999997104089843448999999999998504797089763-------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCC---CCCCEEEEEEEEEC
Q ss_conf 546899986421248998999999999976995489713999976799999839976321137---88620899999947
Q 002803 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYYG 462 (879)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK~~~s~Y~~g~R~~~WiKiKpey~~~---g~~lDlvVIGg~~G 462 (879)
...+.+.+++.++|++++++|.||||+|+++|+|.||+| +|+|+|++|+++ ++++|++|||+++|
T Consensus 379 ----------~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~G 446 (579)
T 3l2p_A 379 ----------MKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYG 446 (579)
T ss_dssp ----------EEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEECC
T ss_pred ----------EEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCE--EEEEEECHHHCCCCCCCCCCEEEEEEEEC
T ss_conf ----------587288899999999999718973377547678899982--06897133205665556455899999958
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCE
Q ss_conf 78888875437999740899988896078999816799999999999861432001368988999640306888878839
Q 002803 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDV 542 (879)
Q Consensus 463 ~Grr~g~~~sfllg~~~~~~~~~~~~~~~~~~kVgtG~s~~e~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~Pdv 542 (879)
+|+|+|.+|+|+||++++++ +.|+++|+||||||++++++|.+++.+++... .+ ..+|.|+... ...+||+
T Consensus 447 ~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~-~~-~~~~~~~~~~--~~~~pd~ 517 (579)
T 3l2p_A 447 QGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK-DP-SKIPSWLKVN--KIYYPDF 517 (579)
T ss_dssp CTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC-----------------------
T ss_pred CCCCCCCEEEEEEEEEECCC-----CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-CC-CCCCCEEECC--CCCCCCE
T ss_conf 98878842579999983799-----85899657668899999999999741123466-87-6687424217--7778967
Q ss_pred EEECCCCEEEEEEEEECEECCCCCCC-CCEEEECCEEEEEECCCCCCCCCCHHHHHHHHHCC
Q ss_conf 99499702999995301000257558-89012153878783699926878999999999806
Q 002803 543 WIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (879)
Q Consensus 543 wi~~P~~s~Vlev~a~~~~~~s~~~~-~g~tLRfPr~~~iR~DK~~~d~~t~~e~~~l~~~~ 603 (879)
|+..|+.++|+||+++.. ..|+.|+ .|+|||||||.|+|+||+|+||+|++++.+|++.+
T Consensus 518 ~~~~P~~~~V~Ei~~~~i-~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~ 578 (579)
T 3l2p_A 518 IVPDPKKAAVWEITGAEF-SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 578 (579)
T ss_dssp -------CEEEEEEESCE-EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTC
T ss_pred EEECCCCCEEEEEEEEEE-EECCCCCCCCEEEECCEEEEEECCCCHHHCCCHHHHHHHHHHC
T ss_conf 984688876999985687-4258744687788888677876899957787999999999644
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=1.00 E-value=1 Score=834.19 Aligned_cols=550 Identities=25% Similarity=0.468 Sum_probs=474.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHC----CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88778489999999999921881689999999972308997186668642----99877675545997889999999994
Q 002803 3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDAL 78 (879)
Q Consensus 3 ~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~~~~~p~lrLl----lp~~dr~r~~yglke~~L~k~~~~~~ 78 (879)
.+.+|+|+.||++|++|++++++.+|+++|.+||.++ .+++++++++|+ +|+++ .|+.|||+++.|++++++++
T Consensus 17 ~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~-~~~~~gi~~~~L~k~~~~~~ 94 (621)
T 2hiv_A 17 RGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS-DKTIIDKVVYIIQGKLWPDFL-GYPELGIGEKFLIKAISIAT 94 (621)
T ss_dssp ----CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS-CGGGHHHHHHHTTTCSSCGGG-CCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHH
T ss_conf 8997769999999999986448799999999999866-946789999998287576645-65005979999999999997
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC--C-------CCCCCCHHHHHHHHHHHHHCCCH---HHHH
Q ss_conf 9994738899985220599999888999999999742028--8-------89988999999999999810183---8799
Q 002803 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--M-------ISGGLTIKELNDLLDRLASSENR---AEKI 146 (879)
Q Consensus 79 ~l~~~s~d~~~L~~wk~~~~~~~~gdf~~~~~~vl~~r~~--~-------~~~~lTi~eVn~~Ld~La~~~~~---~~k~ 146 (879)
|+++..... .| ...||+|.+|+.+++++.. . .+++|||.+||+.|++||..++. ++|.
T Consensus 95 g~~~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~ 164 (621)
T 2hiv_A 95 NTDENSVEN----LY------KTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKI 164 (621)
T ss_dssp TCCHHHHHH----HH------HHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHH
T ss_pred CCCHHHHHH----HH------HHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 919999999----88------75498999999997416554422223467899996999999999997143766399999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC----CC------CCHHHHHHHCCCHHHHHHHHHHHH-HCCCC
Q ss_conf 99999997199978999999996310268763320244----58------687779723089899999996221-01445
Q 002803 147 SVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE----FH------PDAEDLFNVTCDLKLVCEKLKDRN-QRHKR 215 (879)
Q Consensus 147 ~~l~~ll~~~s~~E~kwl~riilkdl~iG~~e~~il~~----~h------pda~~~~~~~~dL~~V~~~L~~~~-~~~~~ 215 (879)
.+|..++.+|++.|++||+|||+++||+|+++++|+.+ |+ ++++++|++++||+.||+.|.++. .++..
T Consensus 165 ~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~v~~~~~~~~dl~~v~~~l~~~g~~~l~~ 244 (621)
T 2hiv_A 165 RLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKT 244 (621)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSGGGHHHHHHHHHHSCCHHHHHHHHHHHCGGGGTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 99999998599999999999970777357457889999999841322358999999723998999999987337442001
Q ss_pred CCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 77656974553000302695899987079826999841337899999198899993589887874143689998611235
Q 002803 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVD 295 (879)
Q Consensus 216 ~~i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~~~~~~~~~ 295 (879)
..+++|.|++||||++...++++++++.+ +|++|+||||+|+|+|++|+.+++|||||+++|..+|++.+.+...+.+.
T Consensus 245 ~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~~ 323 (621)
T 2hiv_A 245 LKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGK 323 (621)
T ss_dssp CCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCCS
T ss_pred CCCCCCCCCCCEECCCCCCHHHHHHHCCC-CEEEEEEECCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 77788999788327806766688862388-67999977226589998599899986899581765046999999757876
Q ss_pred CEEEECEEEEEECCCCCCCCCCCHHHHHHHHHCCC---CCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 32430109986179874345553699999841389---889853999999987589125688999999999852078999
Q 002803 296 RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG 372 (879)
Q Consensus 296 ~~ILDGElv~~d~~~~~~~pFg~l~~~~~~~~~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~i~~~~~ 372 (879)
++|||||||+||+..++++||+.++.. ++ +... ....+++|++|||||+||+++++.||.+|+++|++++.+. +
T Consensus 324 ~~iLDGElv~~d~~~g~~l~F~~L~~r-~~-~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~ 400 (621)
T 2hiv_A 324 EFIIEGEIVAIDPESGEMRPFQELMHR-KR-KSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-D 400 (621)
T ss_dssp SEEEEEEEEEBCTTTCCBCCTHHHHHH-HH-CSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-S
T ss_pred CEEEEEEEEEEECCCCCCCCHHHHHHH-CC-CCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC-C
T ss_conf 858858999730688975898998621-24-55423431457659999934440897054599999999999970758-8
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCCEEEECCCCCC-CC
Q ss_conf 61000368898755468999864212489989999999999769954897139--9997679999983997632113-78
Q 002803 373 RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIR-AG 449 (879)
Q Consensus 373 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK~~--~s~Y~~g~R~~~WiKiKpey~~-~g 449 (879)
++.+. ....+.+.++++++|++++++|.||||+|++ +|+|+||+|+.+|+|+||+|++ .|
T Consensus 401 ~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~ 463 (621)
T 2hiv_A 401 YVKIA-----------------HHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMA 463 (621)
T ss_dssp SEEEC-----------------CEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSC
T ss_pred CEEEE-----------------EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECHHCCCCC
T ss_conf 48986-----------------4698188999999999998459925899855888986498918881899200106767
Q ss_pred CCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 86208999999477888887543799974089998889607899981679999999999986143200136898899964
Q 002803 450 SDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSF 529 (879)
Q Consensus 450 ~~lDlvVIGg~~G~Grr~g~~~sfllg~~~~~~~~~~~~~~~~~~kVgtG~s~~e~~~l~~~l~~~~~~~~~~~~~pp~~ 529 (879)
+++|++|||+++|+|+|+|.+|+|+||++++++ +.|+++|+||||||+++++++.+.+++++... .||.+
T Consensus 464 dt~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~-----~p~~~ 533 (621)
T 2hiv_A 464 DTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKT-----DSFESVCKVASGFSDEQLDELQKKLMEIKRDV-----KHPRV 533 (621)
T ss_dssp EEEEEEEEEEEECSGGGTTSEEEEEEEEEETTT-----TEEEEEEEECBSCCHHHHHHHHHHHHTTEESS-----CCTTE
T ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEEECCC-----CEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCCCC
T ss_conf 606899999972898777753426999982899-----85999736678889999999999876535678-----99775
Q ss_pred EEECCCCCCCCCEEEECCCCEEEEEEEEECEECCCCCCC---------CCEEEECCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 030688887883999499702999995301000257558---------89012153878783699926878999999999
Q 002803 530 YQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFS---------APYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600 (879)
Q Consensus 530 ~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~~~~~~s~~~~---------~g~tLRfPr~~~iR~DK~~~d~~t~~e~~~l~ 600 (879)
. ...+|++|++ |. .|+||+++.. ..|..|+ .|++||||||.++|+||+|+||+|++++.+|+
T Consensus 534 ~-----~~~~~~vwv~-P~--~V~EV~~~~~-t~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~ 604 (621)
T 2hiv_A 534 N-----SKMEPDIWVE-PV--YVAEIIGSEI-TISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMY 604 (621)
T ss_dssp E-----CSSCCSEEEC-SC--CEEEEEESEE-EEETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHH
T ss_pred C-----CCCCCEEEEC-CC--EEEEEEEEEE-ECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCHHHCCCHHHHHHHH
T ss_conf 6-----6788608965-76--6999998887-757653344345557887268867898972899958888999999999
Q ss_pred HCCC
Q ss_conf 8067
Q 002803 601 HSSN 604 (879)
Q Consensus 601 ~~~~ 604 (879)
..+.
T Consensus 605 ~~q~ 608 (621)
T 2hiv_A 605 NKQP 608 (621)
T ss_dssp HHSC
T ss_pred HHHH
T ss_conf 9745
No 3
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=1.00 E-value=1 Score=824.59 Aligned_cols=555 Identities=25% Similarity=0.432 Sum_probs=469.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 877848999999999992188168999999997230--89971866686429987--76755459978899999999949
Q 002803 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTY--CDSVDYFSALRLILPSL--DRERGSYGLKESVLANCLIDALG 79 (879)
Q Consensus 4 ~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~--~~~~~~~p~lrLllp~~--dr~r~~yglke~~L~k~~~~~~~ 79 (879)
...|+|+.||++|++|++++++.+|+.+|.+||.++ ..++|+.++++|+.+.+ ++++.+|||+++.|++++++++|
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99752999999999998610879999999999987534894889999999759977453463327684799999999979
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHH
Q ss_conf 9947388999852205999998889999999997420288-89988999999999999810183---8799999999971
Q 002803 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGM-ISGGLTIKELNDLLDRLASSENR---AEKISVLSTLIKK 155 (879)
Q Consensus 80 l~~~s~d~~~L~~wk~~~~~~~~gdf~~~~~~vl~~r~~~-~~~~lTi~eVn~~Ld~La~~~~~---~~k~~~l~~ll~~ 155 (879)
++...... .| ...||||.+|+++++++... .+.+|||.+||+.|++||..++. ..|..+|..++.+
T Consensus 133 ~~~~~~~~----~~------~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~ 202 (688)
T 1x9n_A 133 RQLESVRA----EA------AEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVA 202 (688)
T ss_dssp CCHHHHHH----HH------HHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH----HH------HHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 29999999----98------853879999999874133457999996999999999998622862588999999999986
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCC------CCC------------------------------HHHHHHHCCCH
Q ss_conf 999789999999963102687633202445------868------------------------------77797230898
Q 002803 156 TNAQEMKWIIMIILKDLKLGISEKSIFHEF------HPD------------------------------AEDLFNVTCDL 199 (879)
Q Consensus 156 ~s~~E~kwl~riilkdl~iG~~e~~il~~~------hpd------------------------------a~~~~~~~~dL 199 (879)
|++.|++||+|||+++||+|+++++|+.++ ||. ..++|+.++||
T Consensus 203 ~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 282 (688)
T 1x9n_A 203 CRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDL 282 (688)
T ss_dssp CCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999999984356557337789999998733686222210344443203555667778999999999997508999
Q ss_pred HHHHHHHHHH-HHCC-CCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEE-CCEEEEEECCCCC
Q ss_conf 9999999622-1014-45776569745530003026958999870798269998413378999991-9889999358988
Q 002803 200 KLVCEKLKDR-NQRH-KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLD 276 (879)
Q Consensus 200 ~~V~~~L~~~-~~~~-~~~~i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~-g~~v~~fSR~g~d 276 (879)
+.||..|... ...+ +...+++|.|++||||+....+.++++++.+..|++|+||||+|+|+|++ ++.+++|||||++
T Consensus 283 ~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d 362 (688)
T 1x9n_A 283 DRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 362 (688)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCB
T ss_pred HHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCC
T ss_conf 99999997366001122367678998667117856887999864378707788764417389999289729999089975
Q ss_pred CCCCHHHHHHHHHHHC--CCCCEEEECEEEEEECCCCCCCCCCCHHHHHHHHHCCCC---CCCCEEEEEEEEEEECCCCC
Q ss_conf 7874143689998611--235324301099861798743455536999998413898---89853999999987589125
Q 002803 277 HSEYGHAMSKIIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS---SDRQLCYFAFDVLYVGDTSV 351 (879)
Q Consensus 277 ~t~~~~~l~~~~~~~~--~~~~~ILDGElv~~d~~~~~~~pFg~l~~~~~~~~~~~~---~~~~~~~~vFDiL~lng~~l 351 (879)
+|..+|++.+.+...+ ..+++|||||||+||+.+++++||+.++.. .+.... ...+++|++|||||+||+++
T Consensus 363 ~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~r---~r~~~~~~~~~~~v~~~vFDlL~l~G~~l 439 (688)
T 1x9n_A 363 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTR---KRKEVDASEIQVQVCLYAFDLIYLNGESL 439 (688)
T ss_dssp CTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTTS---CSSCCCGGGCCSEEEEEEEEEEEETTEEC
T ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHH---HHCCCCHHHCCCCEEEEEEECHHHCCCCC
T ss_conf 455045799999975225888758868999870799870898998777---54254134235665999994631069835
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCC
Q ss_conf 68899999999985207899961000368898755468999864212489989999999999769954897139--9997
Q 002803 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKW 429 (879)
Q Consensus 352 ~~~pl~eRr~~L~~~i~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK~~--~s~Y 429 (879)
++.||.+|+++|++++.+.++++.+.. ...+.+.+++.++|++++++|.||||+|++ +|+|
T Consensus 440 ~~~Pl~eRr~~L~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y 502 (688)
T 1x9n_A 440 VREPLSRRRQLLRENFVETEGEFVFAT-----------------SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATY 502 (688)
T ss_dssp TTSCHHHHHHHHHHHBCCBTTTEEECC-----------------EECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSS
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEE-----------------EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 569999999999996312798489986-----------------686398999999999998559952488605667997
Q ss_pred CCCCCCCCEEEECCCCCCC-CCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 6799999839976321137-886208999999477888887543799974089998889607899981679999999999
Q 002803 430 EPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAV 508 (879)
Q Consensus 430 ~~g~R~~~WiKiKpey~~~-g~~lDlvVIGg~~G~Grr~g~~~sfllg~~~~~~~~~~~~~~~~~~kVgtG~s~~e~~~l 508 (879)
.||+|+.+|+|+||+|++. ++++|++|||+|||+|+|+|.+|+|+||++++++ +.|+++|+||||||++++++|
T Consensus 503 ~~GkRs~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l 577 (688)
T 1x9n_A 503 EIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS-----EELQAICKLGTGFSDEELEEH 577 (688)
T ss_dssp CTTTCSEEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTT-----TEEEEEEEECCSCCHHHHHHH
T ss_pred CCCCCCCHHHEEEHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCC-----CEEEEEEEECCCCCHHHHHHH
T ss_conf 899807147610244421445566379999883788777740059999996899-----869998653799999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCEEEEEEEEECEECCCCCCCC---------CEEEECCEEE
Q ss_conf 9861432001368988999640306888878839994997029999953010002575588---------9012153878
Q 002803 509 VTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA---------PYSLRFPRID 579 (879)
Q Consensus 509 ~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~~~~~~s~~~~~---------g~tLRfPr~~ 579 (879)
.+.+++++.. .||.++... ...+|++|++ |. .|+||++... ..|..|++ |++||||||.
T Consensus 578 ~~~l~~~~~~------~~~~~~~~~--~~~~p~vwv~-P~--~V~EV~~~e~-t~S~~~~~~~g~~~~~~G~sLRfPrf~ 645 (688)
T 1x9n_A 578 HQSLKALVLP------SPRPYVRID--GAVIPDHWLD-PS--AVWEVKCADL-SLSPIYPAARGLVDSDKGISLRFPRFI 645 (688)
T ss_dssp HHHHHHTEES------SCCTTEECS--SSCCCSEEEC-SC--CEEEEEESEE-EEESSCCTTTTTSCSSCEEEEESCEEE
T ss_pred HHHHHCCCCC------CCCCCCCCC--CCCCCCEEEC-CC--EEEEEEEEEE-ECCCCCCCCCCCCCCCCCCEEECCEEE
T ss_conf 9875001558------888764457--7788858957-86--7999997760-316652233454335899658775798
Q ss_pred EEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 78369992687899999999980679
Q 002803 580 RVRYDKPWHDCLDVQSFVELVHSSNG 605 (879)
Q Consensus 580 ~iR~DK~~~d~~t~~e~~~l~~~~~~ 605 (879)
++|+||+|+||+|++++.+|++++..
T Consensus 646 riR~DK~~~ea~t~~~l~~l~~~q~~ 671 (688)
T 1x9n_A 646 RVREDKQPEQATTSAQVACLYRKQSQ 671 (688)
T ss_dssp EECTTCCGGGSCBHHHHHHHHHHHC-
T ss_pred EEECCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 98699996888899999999998676
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=1.00 E-value=1 Score=813.06 Aligned_cols=532 Identities=25% Similarity=0.449 Sum_probs=461.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHC----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8489999999999921881689999999972308997186668642----998776755459978899999999949994
Q 002803 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMSK 82 (879)
Q Consensus 7 ~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~~~~~p~lrLl----lp~~dr~r~~yglke~~L~k~~~~~~~l~~ 82 (879)
|+|+.||++|++|++++++.+|+++|.+||.++ .++|++|+++|+ +|+++ +++|||+++.|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~--~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV-PDDHLEFIPYLILGEVFPEWD--ERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS-CGGGTTTHHHHHTTCSSCTTC--CCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 938999999999997438799999999999866-916789999998099886534--52228787999999999979199
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHCC
Q ss_conf 738899985220599999888999999999742028--889988999999999999810183---879999999997199
Q 002803 83 DSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--MISGGLTIKELNDLLDRLASSENR---AEKISVLSTLIKKTN 157 (879)
Q Consensus 83 ~s~d~~~L~~wk~~~~~~~~gdf~~~~~~vl~~r~~--~~~~~lTi~eVn~~Ld~La~~~~~---~~k~~~l~~ll~~~s 157 (879)
..... .| ...||+|.+++.++++++. ..+++|||.+||+.|++||..++. ++|..+|..++.+|+
T Consensus 78 ~~~~~----~~------~~~GDlg~~~~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~ 147 (561)
T 2cfm_A 78 KEIEE----SV------KDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAE 147 (561)
T ss_dssp HHHHH----HH------HHHSCHHHHHHHHHHHHTTTCCCCCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHH----HH------HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999----98------865989999999850376767678999699999999999713375549999999999999699
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCC----C---CCCHHHHHHHCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCE
Q ss_conf 978999999996310268763320244----5---8687779723089899999996221-0144577656974553000
Q 002803 158 AQEMKWIIMIILKDLKLGISEKSIFHE----F---HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229 (879)
Q Consensus 158 ~~E~kwl~riilkdl~iG~~e~~il~~----~---hpda~~~~~~~~dL~~V~~~L~~~~-~~~~~~~i~~~~~~~PmLA 229 (879)
+.|++||+|||+++||+|+++++|+.+ | |++++++|++++||+.||+.|.++. .++....+.+|.|++||||
T Consensus 148 ~~e~~~l~rli~~~lriG~~~~~vl~ala~a~~~~~~~v~~~~~~~~~l~~v~~~l~~~g~~~l~~~~~~~~~P~~PmLA 227 (561)
T 2cfm_A 148 PLEAKYLARTILGTMRTGVAEGLLRDAIAMAFHVKVELVERAYMLTSDFGYVAKIAKLEGNEGLAKVQVQLGKPIKPMLA 227 (561)
T ss_dssp HHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCTTSCCCCCEE
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 99999999997266602655778999999874678899999973399889999999733623212267888999878117
Q ss_pred EECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECEEEEEECC
Q ss_conf 30269589998707982699984133789999919889999358988787414368999861123532430109986179
Q 002803 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTS 309 (879)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~~~~~~~~~~~ILDGElv~~d~~ 309 (879)
+....++++++++.+ +|++|+||||+|+|+|+.++.+++|||+|+++|..+|++.+.+...+.+.++|||||||+|| .
T Consensus 228 ~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~~~~iLDGElv~~d-~ 305 (561)
T 2cfm_A 228 QQAASIRDALLEMGG-EAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIPEKAIVEGELVAIG-E 305 (561)
T ss_dssp EEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCSSEEEEEEEEEEBC-T
T ss_pred CCCCCHHHHHHHCCC-CEEEEEEECEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC-C
T ss_conf 857875688762388-67999808409899999799999994999884544166999999757876668655899974-8
Q ss_pred CCCCCCCCCHHHHHHHHHCCC---CCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCC
Q ss_conf 874345553699999841389---88985399999998758912568899999999985207899961000368898755
Q 002803 310 LNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 386 (879)
Q Consensus 310 ~~~~~pFg~l~~~~~~~~~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~~~~~~~~~ 386 (879)
.++++||+.++...++. ... ....+++|++|||||+||+++++.||.+|+++|++++.+. +++.+.
T Consensus 306 ~g~~~~F~~L~~r~~~~-~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~~--------- 374 (561)
T 2cfm_A 306 NGRPLPFQYVLRRFRRK-HNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKVA--------- 374 (561)
T ss_dssp TSSBCCTHHHHHHHHCC-SCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEEC---------
T ss_pred CCCCCCHHHHHHHHHCC-CCHHHHCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEE---------
T ss_conf 99566899999875046-5422202457559999988868884732389999999999970768-858983---------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 46899986421248998999999999976995489713999976799999839976321137886208999999477888
Q 002803 387 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR 466 (879)
Q Consensus 387 v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK~~~s~Y~~g~R~~~WiKiKpey~~~g~~lDlvVIGg~~G~Grr 466 (879)
....+.+.++++++|++++++|.||||+|+++|+|.||+|+++|+|+||+| +++|++|||++||+|++
T Consensus 375 --------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----dt~D~vViG~~~g~Gkr 442 (561)
T 2cfm_A 375 --------ENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRR 442 (561)
T ss_dssp --------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC----CCEEEEEEEEEECSGGG
T ss_pred --------EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCC----CCEEEEEEEEEECCCCC
T ss_conf --------349818899999999999974995568867899788999288808983667----63428999998089987
Q ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEC
Q ss_conf 88754379997408999888960789998167999999999998614320013689889996403068888788399949
Q 002803 467 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES 546 (879)
Q Consensus 467 ~g~~~sfllg~~~~~~~~~~~~~~~~~~kVgtG~s~~e~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~Pdvwi~~ 546 (879)
+|.+|+|+||++++++ +.|+++|+||||||+++++++.+.+++++.. ...|++|++
T Consensus 443 ~g~~g~lllg~~d~~~-----~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~------------------~~~~~~wv~- 498 (561)
T 2cfm_A 443 AHLFGSFILGAYDPET-----GEFLEVGKVGSGFTDDDLVEFTKMLKPLIIK------------------EEGKRVWLQ- 498 (561)
T ss_dssp TTSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEE------------------EETTEEEEC-
T ss_pred CCCCCEEEEEEEECCC-----CEEEEEEEECCCCCHHHHHHHHHHHHHHCCC------------------CCCCEEEEC-
T ss_conf 7750118999983899-----8499986867889999999999987642546------------------579808967-
Q ss_pred CCCEEEEEEEEECEECCCCCCCCCEEEECCEEEEEECCCCCCCCCCHHHHHHHHHCC
Q ss_conf 970299999530100025755889012153878783699926878999999999806
Q 002803 547 PEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (879)
Q Consensus 547 P~~s~Vlev~a~~~~~~s~~~~~g~tLRfPr~~~iR~DK~~~d~~t~~e~~~l~~~~ 603 (879)
|. .|+||+++.. ..|..|+.|++||||||.++|+||+|+||+|++++.+|++++
T Consensus 499 P~--~V~EV~~~~~-t~s~~~~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (561)
T 2cfm_A 499 PK--VVIEVTYQEI-QKSPKYRSGFALRFPRFVALRDDKGPEDADTIERIAQLYELQ 552 (561)
T ss_dssp SC--CEEEEECSEE-ECCSSSTTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHH
T ss_pred CC--EEEEEEEEEE-ECCCCCCCCCEEECCEEEEEECCCCHHHCCCHHHHHHHHHHH
T ss_conf 86--3999998898-757766789888861899984899958888999999999986
No 5
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=812.66 Aligned_cols=529 Identities=24% Similarity=0.424 Sum_probs=455.4
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-HHHHHHHHC----CCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 78489999999999921881689999999972308997-186668642----9987767554599788999999999499
Q 002803 6 ETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSV-DYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGM 80 (879)
Q Consensus 6 ~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~~-~~~p~lrLl----lp~~dr~r~~yglke~~L~k~~~~~~~l 80 (879)
-|+|+.||++|++|++++++.+|+++|.+||.++. ++ +++++++|+ +|+++ +++|||+++.|++++++++|+
T Consensus 3 ~m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~-~~~~~~~~~~l~~g~~~p~~~--~~~~gi~~~~l~~~~~~~~g~ 79 (558)
T 3gde_A 3 HMLFAEFAEFCERLEKISSTLELTARIAAFLQKIE-DERDLYDVVLFITGKVYPPWD--ERELGVGIGLLYEALENVSGV 79 (558)
T ss_dssp SCBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTCSSCTTS--SCCCCCCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHCCCCCCCCC--CCEECCCHHHHHHHHHHHHCC
T ss_conf 66399999999999863388999999999997589-612089999997299786533--424076868999999999796
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHH
Q ss_conf 9473889998522059999988899999999974202--8889988999999999999810183---8799999999971
Q 002803 81 SKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GMISGGLTIKELNDLLDRLASSENR---AEKISVLSTLIKK 155 (879)
Q Consensus 81 ~~~s~d~~~L~~wk~~~~~~~~gdf~~~~~~vl~~r~--~~~~~~lTi~eVn~~Ld~La~~~~~---~~k~~~l~~ll~~ 155 (879)
+...... .| ...||+|.+++.++.++. ...+++|||.+||+.|++||..++. ++|..+|..++.+
T Consensus 80 ~~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~ 149 (558)
T 3gde_A 80 KRSEIES----MI------REYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGL 149 (558)
T ss_dssp CHHHHHH----HH------HHHSCHHHHHHHHHHHHHHHSCCCCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHH----HH------HHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999----98------8659999999998730667777899996999999999998344877689999999999984
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCC----CC--CC-HHHHHHHCCCHHHHHHHHHH-HHHCCCCCCCCCCCCCCCC
Q ss_conf 99978999999996310268763320244----58--68-77797230898999999962-2101445776569745530
Q 002803 156 TNAQEMKWIIMIILKDLKLGISEKSIFHE----FH--PD-AEDLFNVTCDLKLVCEKLKD-RNQRHKRQDIEVGKAVRPQ 227 (879)
Q Consensus 156 ~s~~E~kwl~riilkdl~iG~~e~~il~~----~h--pd-a~~~~~~~~dL~~V~~~L~~-~~~~~~~~~i~~~~~~~Pm 227 (879)
|++.|++||+|||+++||+|+++++|+.+ || |+ ++++|++++||+.||+.|.+ +..++....+++|.|++||
T Consensus 150 ~~~~E~~~l~rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~dl~~v~~~l~~~g~~~l~~~~~~~~~p~~Pm 229 (558)
T 3gde_A 150 ATPLEARYLTRLILNEMRLGVGEGIMRDAIARAFRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPVRMM 229 (558)
T ss_dssp CCHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCCCTTSCCCCC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999999999874556015468899999999848999999999634996488999875157332122678899987771
Q ss_pred CEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECEEEEEE
Q ss_conf 00302695899987079826999841337899999198899993589887874143689998611235324301099861
Q 002803 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWD 307 (879)
Q Consensus 228 LA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~~~~~~~~~~~ILDGElv~~d 307 (879)
||++..++++.++++ .+|++|+||||+|+|+|++|+.+++|||||+++|..+|++.+.+...+ ..+||||||||+|+
T Consensus 230 LA~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l-~~~~iLDGElv~~~ 306 (558)
T 3gde_A 230 LAQVAESLESAVREM--RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSV-KPGVILDGEVIAVK 306 (558)
T ss_dssp EEEECSCHHHHHHHS--SSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHB-CSSEEEEEEEEEEE
T ss_pred ECCCCCCHHHHHHHC--CCEEEEEEEEEEEEEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHC-CCCEEEEEEEEECC
T ss_conf 688679727776203--463899708309999999599999986999814320669999999668-99857876799868
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCC---CCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCC
Q ss_conf 798743455536999998413898---89853999999987589125688999999999852078999610003688987
Q 002803 308 TSLNRFAEFGSNQEIAKAARDGLS---SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN 384 (879)
Q Consensus 308 ~~~~~~~pFg~l~~~~~~~~~~~~---~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~~~~~~~ 384 (879)
.++++||+.++...++. .... ...+++|++||+||+|| ++++.||.+|+++|++++.+ ++++.+..
T Consensus 307 --~g~~~~F~~L~~r~~~~-~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~~------ 375 (558)
T 3gde_A 307 --EGKPMPFQHVLRRFRRK-HDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLAK------ 375 (558)
T ss_dssp --TTEEECHHHHHHHHHC---CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEECC------
T ss_pred --CCCCCCHHHHHHHHCCC-CCHHHHHHCCCEEEEEEEEEEECC-CCCCCCHHHHHHHHHHHCCC-CCEEEEEE------
T ss_conf --99687999999985146-645667621770999999884089-86679999999999986577-88199963------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 55468999864212489989999999999769954897139999767999998399763211378862089999994778
Q 002803 385 SHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSG 464 (879)
Q Consensus 385 ~~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK~~~s~Y~~g~R~~~WiKiKpey~~~g~~lDlvVIGg~~G~G 464 (879)
...+.+.+++.++|++++++|.||||+|+++|+|.||+|+++|+|+||+. +++|++|||++||+|
T Consensus 376 -----------~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----~t~D~vViG~~~g~G 440 (558)
T 3gde_A 376 -----------QIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIM----ETLDLVVVGGEWGEG 440 (558)
T ss_dssp -----------EEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEESSC----CCEEEEEEEEEECCT
T ss_pred -----------EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCC----CEEEEEEEEEEECCC
T ss_conf -----------58618999999999999975996168862788878999688628983356----417899999981898
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 88887543799974089998889607899981679999999999986143200136898899964030688887883999
Q 002803 465 RRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWI 544 (879)
Q Consensus 465 rr~g~~~sfllg~~~~~~~~~~~~~~~~~~kVgtG~s~~e~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~Pdvwi 544 (879)
+|+|.+|+|+||++++++ +.|+++|+||||||+++++++.+.+++++... ..|++|+
T Consensus 441 kr~g~~g~lllg~~d~~~-----g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~------------------~~~~vwv 497 (558)
T 3gde_A 441 KRSHWLSSFELACLDPVT-----GKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ------------------QGKKVEF 497 (558)
T ss_dssp TGGGSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE------------------ETTEEEE
T ss_pred CCCCCCCEEEEEEEECCC-----CEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC------------------CCCCEEE
T ss_conf 766752307999861799-----97999845678899999999999877543567------------------8990792
Q ss_pred ECCCCEEEEEEEEECEECCCCCCCCCEEEECCEEEEEECCCCCCCCCCHHHHHHHHHCC
Q ss_conf 49970299999530100025755889012153878783699926878999999999806
Q 002803 545 ESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (879)
Q Consensus 545 ~~P~~s~Vlev~a~~~~~~s~~~~~g~tLRfPr~~~iR~DK~~~d~~t~~e~~~l~~~~ 603 (879)
+ | ..|+||+++. +..|..|++|++||||||.++|+||+|+||+|++++.+|++.+
T Consensus 498 ~-P--~lV~EV~~~~-~t~s~~~~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (558)
T 3gde_A 498 I-P--KYVFEVAYQE-IQKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 552 (558)
T ss_dssp C-S--CCEEEEECSE-EEECSSSTTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTT
T ss_pred C-C--CEEEEEEEEE-EECCCCCCCCCEEECCEEEEEECCCCHHHCCCHHHHHHHHHHH
T ss_conf 5-8--5799999756-5627766789778886787987899957787999999999976
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=489.18 Aligned_cols=307 Identities=23% Similarity=0.350 Sum_probs=251.8
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 65697455300030269589998707982699984133789999919889999358988787414368999861123532
Q 002803 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRC 297 (879)
Q Consensus 218 i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~~~~~~~~~~~ 297 (879)
.++|.|++||||+.... +. +.+.+|++|+||||+|+|+|+.++++++|||||+++|..+|++.+.+ ..+...++
T Consensus 3 ~~~~~p~~PmLA~~~~~-~~----~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~-~~l~~~~~ 76 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGTV-AG----LKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALA-EDLADHHV 76 (310)
T ss_dssp -CCGGGCCCCEEEECCC-TT----CCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHH-HHTTTCEE
T ss_pred CCCCCCCCCEECCCCCC-CC----CCCCCEEEEECCCCEEEEEEEECCEEEEECCCCCCCHHHCHHHHHHH-HHCCCCCE
T ss_conf 88999866707987388-75----67998899985485999999989999999099989532162378899-73787657
Q ss_pred EEECEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 43010998617987434555369999984138988985399999998758912568899999999985207899961000
Q 002803 298 ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377 (879)
Q Consensus 298 ILDGElv~~d~~~~~~~pFg~l~~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~i~~~~~~~~i~ 377 (879)
|||||||+||+. ++ .+|+.++. +.+ ..+++|++||||++||+++++.||.+|+++|++++.+. ++.+.
T Consensus 77 iLDGElv~~d~~-g~-~~F~~l~~---r~~-----~~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i~~~ 144 (310)
T 1vs0_A 77 VLDGEAVVLDSS-GV-PSFSQMQN---RGR-----DTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SLTVP 144 (310)
T ss_dssp EEEEEEECBCTT-SC-BCHHHHHT---CCT-----TSCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CCCCC
T ss_pred EEEEEEEEECCC-CC-CCHHHHHH---HCC-----CCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC--CEEEC
T ss_conf 974699998899-97-59899974---444-----87489999980879983961389999999999853678--38977
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEE
Q ss_conf 36889875546899986421248998999999999976995489713999976799999839976321137886208999
Q 002803 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 457 (879)
Q Consensus 378 ~~~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK~~~s~Y~~g~R~~~WiKiKpey~~~g~~lDlvVI 457 (879)
+ .. ..+++++|++++++|.||||+|+++|+|.+|+|+.+|+|+|++| ++|++|+
T Consensus 145 -----------~------~~----~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-----~~D~vv~ 198 (310)
T 1vs0_A 145 -----------E------LL----PGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN-----TQEVVIG 198 (310)
T ss_dssp -----------C------CC----CSSHHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE-----EEEEEEE
T ss_pred -----------C------CC----CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCHHE-----EEEEEEE
T ss_conf -----------6------18----33799999999973996479967899758999476891210022-----7899999
Q ss_pred EEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99947788888754379997408999888960789998167999999999998614320013689889996403068888
Q 002803 458 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSK 537 (879)
Q Consensus 458 Gg~~G~Grr~g~~~sfllg~~~~~~~~~~~~~~~~~~kVgtG~s~~e~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~ 537 (879)
|+++|+|+++|.+|+|+||+++++ .++++|+||||||++++++|.+.+++++.. .|| +........
T Consensus 199 G~~~g~G~r~g~~g~lllg~~d~~-------g~~~vgkvgtGftd~~~~~l~~~l~~~~~~------~~p-~~~~~~~~~ 264 (310)
T 1vs0_A 199 GWRAGEGGRSSGVGSLLMGIPGPG-------GLQFAGRVGTGLSERELANLKEMLAPLHTD------ESP-FDVPLPARD 264 (310)
T ss_dssp EEEC--------CCEEEEEEEETT-------EEEEEEEECSSCCHHHHHHHHHHHGGGBCS------SCS-BSSCCCHHH
T ss_pred EEECCCCCCCCCCCEEEEEEECCC-------CCEEEEEECCCCCHHHHHHHHHHHHHHCCC------CCC-CCCCCCCCC
T ss_conf 998689974676220899998499-------978999988889999999999998752567------798-545687555
Q ss_pred CCCCEEEECCCCEEEEEEEEECEECCCCCCCCCEEEECCEEEEEECCCCCCCCCC
Q ss_conf 7883999499702999995301000257558890121538787836999268789
Q 002803 538 ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLD 592 (879)
Q Consensus 538 ~~Pdvwi~~P~~s~Vlev~a~~~~~~s~~~~~g~tLRfPr~~~iR~DK~~~d~~t 592 (879)
.+|++|++ |+ .|+||+++ .++.+++||||||+++|+||+|+||+.
T Consensus 265 ~~~~~wv~-P~--~V~ev~~~-------~~t~~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 265 AKGITYVK-PA--LVAEVRYS-------EWTPEGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp HTTEEEBC-TT--CEEEEEES-------CBCTTSCBTTCEEEEECTTSCGGGCCC
T ss_pred CCCCEEEC-CC--EEEEEEEE-------EECCCCEEECEEEEEEECCCCHHHHCC
T ss_conf 78979976-88--89999987-------986899197628879708989899077
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=1.00 E-value=1 Score=429.45 Aligned_cols=304 Identities=19% Similarity=0.241 Sum_probs=238.7
Q ss_pred CCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEE-CCEEEEEECCCCCCCC------CHHHHHHHH
Q ss_conf 776569745530003026958999870798269998413378999991-9889999358988787------414368999
Q 002803 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHSE------YGHAMSKII 288 (879)
Q Consensus 216 ~~i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~-g~~v~~fSR~g~d~t~------~~~~l~~~~ 288 (879)
..+++|.|++|||+ .+.+++... ..|++|+||||+|+|+|+. ++.+++|||+|++++. ++|++.+.+
T Consensus 3 ~~~~~~~pv~pmL~----~~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~l 76 (348)
T 1a0i_A 3 IKTNPFKAVSFVES----AIKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLL 76 (348)
T ss_dssp TCCCCEEEEECCHH----HHHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHH
T ss_pred EECCCCCCCCHHHH----CHHHHHHHC--CCEEEEEEECEEEEEEEEECCCEEEEECCCCCCCCCHHHHHCCCCHHHHHH
T ss_conf 22557986850133----699997206--858999745605799999389819998688987721444300260489987
Q ss_pred HHH--CCCCCEEEECEEEEEECCCCCCCCCCCHHHHHHHH------------------HCC-----CCCCCCEEEEEEEE
Q ss_conf 861--12353243010998617987434555369999984------------------138-----98898539999999
Q 002803 289 EQN--VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA------------------RDG-----LSSDRQLCYFAFDV 343 (879)
Q Consensus 289 ~~~--~~~~~~ILDGElv~~d~~~~~~~pFg~l~~~~~~~------------------~~~-----~~~~~~~~~~vFDi 343 (879)
... ..+.+||||||||+|+ .||+.++...++. ... .....+++|++|||
T Consensus 77 ~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFDl 150 (348)
T 1a0i_A 77 NDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI 150 (348)
T ss_dssp HSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEEE
T ss_pred HHHHCCCCCCEEEEEEEEEEC------CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 654035788789997899707------99899998755243343443323322222345444421113557579999831
Q ss_pred EEEC----CCCC---CCCCHHHHHHHHHHHCCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8758----9125---688999999999852078999-6100036889875546899986421248998999999999976
Q 002803 344 LYVG----DTSV---IHQSLKERHELLQKVVKPSKG-RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN 415 (879)
Q Consensus 344 L~ln----g~~l---~~~pl~eRr~~L~~~i~~~~~-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~ 415 (879)
||+| |+++ .+.||.+|+++|++++.+.+. ++.+. ....+.+.+++.++|++++++
T Consensus 151 l~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 213 (348)
T 1a0i_A 151 LPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAA-----------------ESYEVYDMVELQQLYEQKRAE 213 (348)
T ss_dssp EEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEEC-----------------CEEEESSHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-----------------CCEECCCHHHHHHHHHHHHHC
T ss_conf 760787789542231067899999999997511798719971-----------------518649999999999999876
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCC--CCCCCEEEEEEECCCCCCCCCCEEEEE
Q ss_conf 995489713999976799999839976321137886208999999477888--887543799974089998889607899
Q 002803 416 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR--GGEVAQFLVALAERPAPDTYPRRFISF 493 (879)
Q Consensus 416 g~EGiVlK~~~s~Y~~g~R~~~WiKiKpey~~~g~~lDlvVIGg~~G~Grr--~g~~~sfllg~~~~~~~~~~~~~~~~~ 493 (879)
|.||||+|+++|+|++|+|++ |+|+||+| ++|++|||+++|+|+| +|.+++|+|.. .++ .|.
T Consensus 214 g~EGlv~K~~ds~Y~~Grr~~-wlK~K~~~-----~~D~vViG~~~g~g~r~~~g~~~~~~~~~--~~g------~~~-- 277 (348)
T 1a0i_A 214 GHEGLIVKDPMCIYKRGKKSG-WWKMKPEN-----EADGIIQGLVWGTKGLANEGKVIGFEVLL--ESG------RLV-- 277 (348)
T ss_dssp TCCCEEEECTTCEECSEEEEE-EEEESCCE-----EEEEEEEEEECCCTTTSSCSSCCEEEEEC--TTS------CEE--
T ss_pred CCCEEEEECCCCCCCCCCCCC-CEEEEECC-----CEEEEEEEEEECCCCCCCCCEEEEEEEEE--CCC------CEE--
T ss_conf 985688867999878988057-27970046-----07899997783899744786177899994--799------889--
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCEEEEEEEEECEECCCCCCCCCEEE
Q ss_conf 98167999999999998614320013689889996403068888788399949970299999530100025755889012
Q 002803 494 CRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSL 573 (879)
Q Consensus 494 ~kVgtG~s~~e~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~~~~~~s~~~~~g~tL 573 (879)
+|||||++++++|.+.+++++.. ...|| +- . ....+|++|++ |..+.|+||++.. ++.+++|
T Consensus 278 --~gtGftd~~~~~l~~~l~~~~~~----~~~~~-~~-~--~~~~~~~~wv~-P~~g~v~eV~~~~-------~t~~G~l 339 (348)
T 1a0i_A 278 --NATNISRALMDEFTETVKEATLS----QWGFF-SP-Y--GIGDNDACTIN-PYDGWACQISYME-------ETPDGSL 339 (348)
T ss_dssp --EEBCCCSHHHHHHHHHHHHHHTT----TSCCC------------CCCCCC-TTTTCEEEEEESE-------ECTTSCE
T ss_pred --ECCCCCHHHHHHHHHHHHHHCCC----CCCCC-CC-C--CCCCCCCEEEC-CCCCEEEEEEEEE-------ECCCCCE
T ss_conf --85599999999999998643234----57986-44-5--67788857775-8876799999405-------5689950
Q ss_pred ECCEEEEEE
Q ss_conf 153878783
Q 002803 574 RFPRIDRVR 582 (879)
Q Consensus 574 RfPr~~~iR 582 (879)
|||||+++|
T Consensus 340 RfP~f~~~R 348 (348)
T 1a0i_A 340 RHPSFVMFR 348 (348)
T ss_dssp ESCEEEEEC
T ss_pred ECCEEEEEC
T ss_conf 888476739
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=1.00 E-value=1 Score=379.82 Aligned_cols=266 Identities=17% Similarity=0.215 Sum_probs=206.6
Q ss_pred CCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 74553000302695899987079826999841337899999198899993589887874143689998611235324301
Q 002803 222 KAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDG 301 (879)
Q Consensus 222 ~~~~PmLA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~~~~~~~~~~~ILDG 301 (879)
.+|+||||+......+ ...+|++|+||||+|+|+ +| ++|||+|+++|. |++.+.+... . ++||||
T Consensus 1 ~~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~--~g---~l~SR~g~~~t~--p~l~~~~~~~--~-~~iLDG 65 (297)
T 1fvi_A 1 AITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK--QT---QMLSRTFKPIRN--SVMNRLLTEL--L-PEGSDG 65 (297)
T ss_dssp CCSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE--SS---SEECTTSCBCSC--HHHHHHHHHH--S-CTTEEE
T ss_pred CCCCCEECCCCCCCCC-----CCCCEEEEEEEEEEEEEE--CC---EEECCCCCCCCC--HHHHHHHHHC--C-CEEEEE
T ss_conf 9857614882586757-----888599995683245896--48---999999963596--7799999866--8-923877
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-----CCEE
Q ss_conf 09986179874345553699999841389889853999999987589125688999999999852078999-----6100
Q 002803 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG-----RLET 376 (879)
Q Consensus 302 Elv~~d~~~~~~~pFg~l~~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~i~~~~~-----~~~i 376 (879)
|+|++. .+|+.++...+.. ......+++|++|||||+| .+.||.+|+++|++++.+.+. ++.+
T Consensus 66 Elv~~~------~~F~~l~~~~~~~--~~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i~~ 133 (297)
T 1fvi_A 66 EISIEG------ATFQDTTSAVMTG--HKMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQVKI 133 (297)
T ss_dssp EEECTT------SCHHHHHHHHHSC--C----CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSEEE
T ss_pred EEEECC------CCHHHHHHHHCCC--CCCCCCCEEEEEEECCCCC----CCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 999788------8989998875657--8787505499999515778----899999999999998745577545631998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC----CEEEECCCCCCCCCCC
Q ss_conf 036889875546899986421248998999999999976995489713999976799999----8399763211378862
Q 002803 377 LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSG----KWLKLKPEYIRAGSDL 452 (879)
Q Consensus 377 ~~~~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK~~~s~Y~~g~R~~----~WiKiKpey~~~g~~l 452 (879)
+. .....+.+.+++.+++++++++|.||||+|+++|+|++| |+. +|+|+||++ ++
T Consensus 134 ~~---------------~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G-Rs~~~~g~wlK~K~~~-----~~ 192 (297)
T 1fvi_A 134 IP---------------LIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFG-RSTLKEGILLKMKQFK-----DA 192 (297)
T ss_dssp EE---------------CCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSS-BCCTTTTSSEEECCCE-----EE
T ss_pred CC---------------CCEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCCCCCEEEECCCC-----CE
T ss_conf 27---------------523862899999999999987899677987799975899-9988789859988789-----88
Q ss_pred EEEEEEEEEC---------------------CCCC-CCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 0899999947---------------------7888-88754379997408999888960789998167999999999998
Q 002803 453 DVLIIGGYYG---------------------SGRR-GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVT 510 (879)
Q Consensus 453 DlvVIGg~~G---------------------~Grr-~g~~~sfllg~~~~~~~~~~~~~~~~~~kVgtG~s~~e~~~l~~ 510 (879)
|++|||+++| +|++ .|.+|+|+|+.. + .+|+||||||+++++++..
T Consensus 193 d~vVig~~~g~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~---g---------~~~~vgtGftd~~~~~l~~ 260 (297)
T 1fvi_A 193 EATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD---G---------VVFSIGTGFDADQRRDFWQ 260 (297)
T ss_dssp EEEEEEEEESCC-------------------CCCTTCCCEEEEEECST---T---------CCEEECSSCCHHHHHHHHH
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC---C---------EEEEECCCCCHHHHHHHHH
T ss_conf 899998980766544422223354332225789646886889997649---9---------3999888999999999875
Q ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCEEEEEEEEECEECCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 61432001368988999640306888878839994997029999953010002575588901215387878369992
Q 002803 511 KLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 587 (879)
Q Consensus 511 ~l~~~~~~~~~~~~~pp~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~~~~~~s~~~~~g~tLRfPr~~~iR~DK~~ 587 (879)
.+. |. ...|+||++.. ++...+||||||.++|+||+|
T Consensus 261 ~~~-------------p~--------------------~g~v~ev~~~~-------~t~~g~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 261 NKE-------------SY--------------------IGKMVKFKYFE-------MGSKDCPRFPVFIGIRHEEDR 297 (297)
T ss_dssp THH-------------HH--------------------TTCEEEEEEEC-------C-----CEEEEEEEEC-----
T ss_pred HCC-------------CC--------------------CCCEEEEEEEE-------ECCCCCCCCCEEEEEECCCCC
T ss_conf 567-------------66--------------------68489999777-------679997327869999738889
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=1.00 E-value=1 Score=354.39 Aligned_cols=216 Identities=41% Similarity=0.654 Sum_probs=200.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------CCHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 98887784899999999999218816899999999723089------------971866686429987767554599788
Q 002803 1 MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCD------------SVDYFSALRLILPSLDRERGSYGLKES 68 (879)
Q Consensus 1 ~~~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~------------~~~~~p~lrLllp~~dr~r~~yglke~ 68 (879)
|+++++|||+.||++|++|++++++.+|+.+|.+||.+|+. ++++||++||++|++|++|++|||||+
T Consensus 8 ~~~~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~ 87 (240)
T 4htp_A 8 QTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKET 87 (240)
T ss_dssp CCGGGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 11244884999999999998501669999999999999986311124575667205999999868650465554277789
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC---HHH
Q ss_conf 999999999499947388999852205999-9988899999999974202888998899999999999981018---387
Q 002803 69 VLANCLIDALGMSKDSADAVRLINWRKGGA-APNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSEN---RAE 144 (879)
Q Consensus 69 ~L~k~~~~~~~l~~~s~d~~~L~~wk~~~~-~~~~gdf~~~~~~vl~~r~~~~~~~lTi~eVn~~Ld~La~~~~---~~~ 144 (879)
+|+|+|++++|+++++.++.+|.|||.|+. +...||||.+|++++++|+.. +++|||.+||+.|++||..++ ++.
T Consensus 88 ~L~Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~~-~~~LTv~~V~~~L~~IA~~~g~~s~~~ 166 (240)
T 4htp_A 88 MLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQ-KGSLTIQQVNDLLDSIASNNSAKRKDL 166 (240)
T ss_dssp HHHHHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSCC-SCCCBHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999999997898405789998740253211366787999999999724789-998679999999999998448661899
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999997199978999999996310268763320244586877797230898999999962210144577
Q 002803 145 KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD 217 (879)
Q Consensus 145 k~~~l~~ll~~~s~~E~kwl~riilkdl~iG~~e~~il~~~hpda~~~~~~~~dL~~V~~~L~~~~~~~~~~~ 217 (879)
+..+|..|+.+|++.|+|||+|||+|+||+|+++++|+.+|||+|+++|++|+||+.||+.|++|..+++...
T Consensus 167 k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~~~~a~~~~~dL~~V~~~l~~~~~~L~~~~ 239 (240)
T 4htp_A 167 IKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDIS 239 (240)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTTHHHHHHHHCCHHHHHHHTCSTTSCTTC--
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHCC
T ss_conf 9999999999799999999999985100028658699998576099999862789999999828053376457
No 10
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=1.00 E-value=1 Score=331.07 Aligned_cols=208 Identities=24% Similarity=0.364 Sum_probs=179.2
Q ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCHHHHHHCCCC--CEEEECHHHHHHHC
Q ss_conf 8777424819999839998997899999997099884316998019998058762566550599--73431047874303
Q 002803 652 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCCSQ 729 (879)
Q Consensus 652 ~~s~iF~g~~F~v~~~~~~~~k~eLe~lI~~~GG~~vqn~~~~~T~~I~~~~~~~k~~~~~~~~--dIV~p~Wi~dCi~~ 729 (879)
++|++|+|++|||+++....++++|+++|.+|||++++|+++ .||||++++.+.|++++++++ +||+|+||+||+++
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~-~t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGP-DTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCT-TEEEEECSSCCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCC-CEEEEEECCCCHHHHHHHHCCCCCEEEHHHHHHHHHC
T ss_conf 676667994999974898778999999999829989853999-9799980899887999986499888622999999766
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCH------HHHHHHHHHCCCC-CCCCC
Q ss_conf 8556788423134794568676542024788645569978999999406999992------2688898602999-98787
Q 002803 730 KKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP------KTIDYYKKKYCPQ-DKWSC 802 (879)
Q Consensus 730 ~~llp~~p~~~l~~s~~t~~~~~~~~D~ygDSy~~~~~~~~l~~ll~~~~~~~~~------~~~~~l~~~~~~~-~~~~l 802 (879)
+++|||+|+|++++++++++.+++++|+|||||++|+|+++|++||++|+..+.. ..+++++++++.+ .|++|
T Consensus 85 ~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 164 (263)
T 3ii6_X 85 KSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSM 164 (263)
T ss_dssp TSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGT
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98589988997508888999999826665784678599999999998476445678313678999999863546884044
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCC-CCEEEEEECCCCCC
Q ss_conf 7780999727899999826888778999999882455954215899-98149999359997
Q 002803 803 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGVSLPERNI-FYGTRSCMLLDPSG 862 (879)
Q Consensus 803 F~g~~vy~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~GG~v~~~~~-~~vTHVVv~~d~~~ 862 (879)
|+||+|||+.+... +.+...+.+..++++++.++++||+++ +.+ +.|||||+..+.+.
T Consensus 165 F~~~~vy~~~~~~~-~~~~~~i~~~~l~~~~~~i~~~GG~v~-~~l~~~vTHVVv~~~~~r 223 (263)
T 3ii6_X 165 FRRHTVYLDSYAVI-NDLSTKNEGTRLAIKALELRFHGAKVV-SCLAEGVSHVIIGEDHSR 223 (263)
T ss_dssp TTTCEEEECCBSST-TCGGGBCCSSHHHHHHHHHHHTTCEEE-SSCCTTCCEEEECSCCTT
T ss_pred HCCEEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHCCCCEEE-CCCCCCCEEEEECCCCCC
T ss_conf 38859999333345-774222203079999999970598995-677999559998899862
Done!