Your job contains 1 sequence.
>002804
MAQMERSQVETTSFCFSPHRHLKSETYRALVQILSHCYDHSQISAAQDSRPGMCGSGELV
GPNAAVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYET
GNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQV
DKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNSLEFENEMQQKEMEEEKL
VHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSKDVT
DKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTAT
MAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDK
LDSGACNKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYL
KGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFC
NRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNH
GKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFA
NQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTS
LSNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTG
KALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDH
SAQGYYRSTSNSAQRALEFATKIEPKVKTNQSTVGTAVK
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002804
(879 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2164660 - symbol:EMB1789 "embryo defective 178... 454 2.3e-40 1
UNIPROTKB|F1SUA3 - symbol:ZC3H6 "Uncharacterized protein"... 183 3.2e-11 3
MGI|MGI:1926001 - symbol:Zc3h6 "zinc finger CCCH type con... 184 3.9e-11 3
UNIPROTKB|P61129 - symbol:ZC3H6 "Zinc finger CCCH domain-... 183 6.6e-11 3
DICTYBASE|DDB_G0277543 - symbol:DDB_G0277543 "CCCH-type z... 176 8.8e-11 3
MGI|MGI:1930128 - symbol:Zc3h8 "zinc finger CCCH type con... 171 7.4e-10 1
UNIPROTKB|F1PWF3 - symbol:ZC3H6 "Uncharacterized protein"... 183 1.1e-09 4
RGD|1310458 - symbol:Zc3h8 "zinc finger CCCH type contain... 168 1.6e-09 1
UNIPROTKB|Q17QY2 - symbol:ZC3H8 "Zinc finger CCCH-type co... 164 4.6e-09 1
UNIPROTKB|A6NMK7 - symbol:CPSF4L "Putative cleavage and p... 144 7.8e-09 1
UNIPROTKB|F1SUA1 - symbol:ZC3H8 "Uncharacterized protein"... 162 8.1e-09 1
UNIPROTKB|E2RFS8 - symbol:ZC3H8 "Uncharacterized protein"... 164 9.7e-09 1
UNIPROTKB|F1LTU5 - symbol:Zc3h6 "Protein Zc3h6" species:1... 168 1.1e-08 4
UNIPROTKB|Q8N5P1 - symbol:ZC3H8 "Zinc finger CCCH domain-... 163 1.4e-08 2
UNIPROTKB|D4A5G7 - symbol:LOC678741 "Protein LOC678741" s... 176 2.2e-08 3
MGI|MGI:2682314 - symbol:Zc3h4 "zinc finger CCCH-type con... 176 2.6e-08 3
UNIPROTKB|F1MCW9 - symbol:ZC3H6 "Uncharacterized protein"... 183 3.2e-08 3
UNIPROTKB|E1BHZ4 - symbol:ZC3H4 "Uncharacterized protein"... 176 3.2e-08 3
UNIPROTKB|E1C259 - symbol:ZC3H6 "Uncharacterized protein"... 169 4.0e-08 3
UNIPROTKB|Q9UPT8 - symbol:ZC3H4 "Zinc finger CCCH domain-... 176 6.4e-08 3
UNIPROTKB|F1NHU3 - symbol:ZC3H3 "Uncharacterized protein"... 156 6.7e-08 1
UNIPROTKB|I3LVF0 - symbol:I3LVF0 "Uncharacterized protein... 155 1.2e-07 1
POMBASE|SPAC227.08c - symbol:yth1 "mRNA cleavage and poly... 132 1.5e-07 1
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 143 1.7e-07 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 143 1.7e-07 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 141 3.3e-07 1
UNIPROTKB|Q8IXZ2 - symbol:ZC3H3 "Zinc finger CCCH domain-... 155 3.8e-07 1
UNIPROTKB|E2RSL2 - symbol:ZC3H4 "Uncharacterized protein"... 176 4.2e-07 4
UNIPROTKB|F1MXR8 - symbol:ZC3H3 "Uncharacterized protein"... 152 8.0e-07 1
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 140 1.1e-06 1
UNIPROTKB|C9IZP5 - symbol:MKRN1 "E3 ubiquitin-protein lig... 122 1.8e-06 1
UNIPROTKB|F1NI93 - symbol:MKRN2 "Uncharacterized protein"... 125 2.0e-06 2
UNIPROTKB|Q9PTI4 - symbol:MKRN1 "Uncharacterized protein"... 122 2.3e-06 2
UNIPROTKB|E1BV31 - symbol:CPSF4 "Uncharacterized protein"... 137 2.5e-06 1
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 137 2.5e-06 1
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 137 2.5e-06 1
UNIPROTKB|F1PNB5 - symbol:ZC3H3 "Uncharacterized protein"... 154 3.3e-06 3
UNIPROTKB|J9P398 - symbol:CPSF4 "Uncharacterized protein"... 137 3.6e-06 1
UNIPROTKB|O95639 - symbol:CPSF4 "Cleavage and polyadenyla... 137 3.6e-06 1
UNIPROTKB|F1REX3 - symbol:LOC100518830 "Uncharacterized p... 137 3.6e-06 1
UNIPROTKB|Q66KE3 - symbol:cpsf4 "Cleavage and polyadenyla... 137 3.6e-06 1
UNIPROTKB|Q6DJP7 - symbol:cpsf4 "Cleavage and polyadenyla... 137 3.6e-06 1
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 119 3.7e-06 1
ZFIN|ZDB-GENE-990415-180 - symbol:cpsf4 "cleavage and pol... 137 3.7e-06 1
DICTYBASE|DDB_G0270148 - symbol:cpsf4 "cleavage and polya... 140 3.8e-06 1
UNIPROTKB|F1LWJ4 - symbol:F1LWJ4 "Uncharacterized protein... 135 4.3e-06 1
UNIPROTKB|C9JYX8 - symbol:MKRN1 "E3 ubiquitin-protein lig... 117 6.0e-06 1
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 134 6.6e-06 1
CGD|CAL0005897 - symbol:YTH1 species:5476 "Candida albica... 131 7.1e-06 1
UNIPROTKB|Q59T36 - symbol:YTH1 "mRNA 3'-end-processing pr... 131 7.1e-06 1
UNIPROTKB|E2RBM0 - symbol:CPSF4 "Uncharacterized protein"... 119 7.3e-06 1
SGD|S000006311 - symbol:YTH1 "Essential RNA-binding compo... 130 7.6e-06 1
DICTYBASE|DDB_G0279181 - symbol:DDB_G0279181 species:4468... 140 8.8e-06 1
WB|WBGene00044329 - symbol:cpsf-4 species:6239 "Caenorhab... 133 1.4e-05 1
FB|FBgn0036203 - symbol:Muc68D "Mucin 68D" species:7227 "... 117 1.7e-05 2
ZFIN|ZDB-GENE-020213-1 - symbol:mkrn1 "makorin, ring fing... 122 1.7e-05 2
UNIPROTKB|E1BQC4 - symbol:E1BQC4 "Uncharacterized protein... 113 1.7e-05 2
RGD|1307276 - symbol:Zc3h3 "zinc finger CCCH type contain... 152 1.9e-05 2
DICTYBASE|DDB_G0267686 - symbol:DDB_G0267686 "protein kin... 92 2.0e-05 4
UNIPROTKB|I3LCK9 - symbol:LOC100738395 "Uncharacterized p... 129 2.1e-05 1
MGI|MGI:1859353 - symbol:Mkrn1 "makorin, ring finger prot... 134 2.7e-05 1
FB|FBgn0015621 - symbol:Clp "Clipper" species:7227 "Droso... 130 2.9e-05 1
POMBASE|SPBC215.13 - symbol:SPBC215.13 "sequence orphan" ... 134 3.2e-05 1
UNIPROTKB|C9J031 - symbol:MKRN1 "E3 ubiquitin-protein lig... 117 3.6e-05 1
UNIPROTKB|Q13434 - symbol:MKRN4P "Putative E3 ubiquitin-p... 132 4.6e-05 1
CGD|CAL0004807 - symbol:orf19.7385 species:5476 "Candida ... 132 4.8e-05 1
UNIPROTKB|Q5A4E9 - symbol:LEE1 "Putative uncharacterized ... 132 4.8e-05 1
UNIPROTKB|H7C016 - symbol:CPSF4 "Cleavage and polyadenyla... 125 4.9e-05 1
UNIPROTKB|C9J7K5 - symbol:MKRN1 "E3 ubiquitin-protein lig... 108 5.5e-05 1
ZFIN|ZDB-GENE-020213-2 - symbol:mkrn2 "makorin, ring fing... 126 6.6e-05 2
UNIPROTKB|Q6EE22 - symbol:UNK "RING finger protein unkemp... 105 7.6e-05 2
UNIPROTKB|Q9UHC7 - symbol:MKRN1 "E3 ubiquitin-protein lig... 129 9.1e-05 2
UNIPROTKB|F1P815 - symbol:UNK "RING finger protein unkemp... 105 9.3e-05 2
UNIPROTKB|F1MF12 - symbol:MKRN1 "Uncharacterized protein"... 129 9.6e-05 1
UNIPROTKB|Q9C0B0 - symbol:UNK "RING finger protein unkemp... 104 9.7e-05 2
UNIPROTKB|B7Z7B0 - symbol:CPSF4 "Cleavage and polyadenyla... 119 0.00011 1
UNIPROTKB|G3V789 - symbol:Mkrn1 "Protein Mkrn1" species:1... 128 0.00012 1
UNIPROTKB|E2RRA5 - symbol:MKRN1 "Uncharacterized protein"... 127 0.00015 2
UNIPROTKB|F1RVY8 - symbol:UNK "Uncharacterized protein" s... 102 0.00016 2
WB|WBGene00020827 - symbol:T26A8.4 species:6239 "Caenorha... 135 0.00020 2
UNIPROTKB|F1SRP7 - symbol:MKRN1 "Uncharacterized protein"... 126 0.00020 1
UNIPROTKB|C9IY57 - symbol:MKRN1 "E3 ubiquitin-protein lig... 117 0.00020 1
UNIPROTKB|B0F0H3 - symbol:mkrn2 "Probable E3 ubiquitin-pr... 127 0.00025 2
UNIPROTKB|E2REH2 - symbol:MKRN2 "Uncharacterized protein"... 109 0.00035 2
POMBASE|SPCC1739.01 - symbol:SPCC1739.01 "zf-CCCH type zi... 134 0.00036 2
DICTYBASE|DDB_G0281657 - symbol:DDB_G0281657 "Probable E3... 104 0.00038 2
TAIR|locus:2028175 - symbol:CPSF30 "AT1G30460" species:37... 125 0.00039 1
UNIPROTKB|F6QHJ6 - symbol:UNK "Uncharacterized protein" s... 99 0.00041 3
ASPGD|ASPL0000046029 - symbol:AN1537 species:162425 "Emer... 123 0.00041 1
UNIPROTKB|Q9H000 - symbol:MKRN2 "Probable E3 ubiquitin-pr... 108 0.00044 2
UNIPROTKB|F1MRH0 - symbol:MKRN1 "Uncharacterized protein"... 120 0.00051 1
ASPGD|ASPL0000012800 - symbol:chiA species:162425 "Emeric... 126 0.00052 1
MGI|MGI:1914277 - symbol:Mkrn2 "makorin, ring finger prot... 107 0.00056 2
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 107 0.00057 2
UNIPROTKB|F8WAS8 - symbol:MKRN1 "E3 ubiquitin-protein lig... 111 0.00063 1
UNIPROTKB|C9JYI0 - symbol:MKRN1 "E3 ubiquitin-protein lig... 97 0.00082 1
>TAIR|locus:2164660 [details] [associations]
symbol:EMB1789 "embryo defective 1789" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0090305 GO:GO:0004518 EMBL:AB024035
EMBL:BX832581 IPI:IPI00520804 RefSeq:NP_200503.1 UniGene:At.50534
ProteinModelPortal:Q9LTS7 SMR:Q9LTS7 PRIDE:Q9LTS7
EnsemblPlants:AT5G56930.1 GeneID:835795 KEGG:ath:AT5G56930
TAIR:At5g56930 eggNOG:NOG245027 HOGENOM:HOG000107457
InParanoid:Q9LTS7 OMA:RCHEGDK PhylomeDB:Q9LTS7
ProtClustDB:CLSN2916798 Genevestigator:Q9LTS7 Uniprot:Q9LTS7
Length = 675
Score = 454 (164.9 bits), Expect = 2.3e-40, P = 2.3e-40
Identities = 162/534 (30%), Positives = 230/534 (43%)
Query: 255 EDVEVEEGEISGH-FEVDEVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGG 313
E ++V + +I + E ++ + +D V +EKK +E S + + E C G
Sbjct: 144 EALDVNDYDIVQNVLEKPNIATQVQVDP--VESEKKAEEVPKSVESNEVISSGVLEACNG 201
Query: 314 T-------EKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAIDPD 366
T EK D++ V +++V G VE E ++ + + T+ +
Sbjct: 202 TVQREMELEKPVDNSPVLVDSVSRIVGGDDVEEGEISGDDND---DMLVEDDETVERHEE 258
Query: 367 RYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGAC 426
S G G N S G+ + D+ +K + Q + E K+D G
Sbjct: 259 YQVSQDGTG-NSHLTSHKSFGVEVMNV---DNQAKK--IDQTFSNEA------KMDPGT- 305
Query: 427 NXXXXXXXXXXXXXXXXXXXXXXXXXXNRQLGVRRLKL-PQNLKPKTVKYCHHYLKGRCQ 485
+ LGV++LKL P KPK +KYC HYLKGRC
Sbjct: 306 SIKKRSAPSKDAKARKRAKARIKRAQERIALGVKKLKLKPVAPKPKPIKYCRHYLKGRCH 365
Query: 486 EGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDN 545
EGDKCKFSHDT+P TK + CC+FA SCMKGD+CPFDHDLSKYPC NF+ KGFC RGD+
Sbjct: 366 EGDKCKFSHDTIPETKCSP-CCYFATQSCMKGDDCPFDHDLSKYPCNNFITKGFCYRGDS 424
Query: 546 CLFSHK-LPPKEQDPPTPSTCTPELKPSPPLYASNLLK-----------PLNNNKVSHQN 593
CLFSHK P D P+ + K + ++ K P +VS +
Sbjct: 425 CLFSHKGTPQSASDTPSANVTVSSTKITAASFSPQKTKKQSVRDAIAKLPAIQARVS-SS 483
Query: 594 VDAL--SNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSP 651
V L S+H + + S + PP + P + SFL Q +
Sbjct: 484 VAFLKPSSHSNQRNSSDASSSKINEHVTPPQVPPLRKPSVAPKGMSFLSLDKTSQE-DTV 542
Query: 652 KKSDSSK--FANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANL 709
K S +SK N +Q S Q P P KG++FLSF S +K N
Sbjct: 543 KASSASKPNTDNSDSQTLKQSQQG-SFLPLGPP---KGISFLSFA------SEEQKTLNR 592
Query: 710 FLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSN----SVQKSN 759
+ +K +L H SS S + AE +A + +N +V KSN
Sbjct: 593 EPQKPASSK-NLKTTPSSHIQSSLLSAMKLAAEFESAKVERGNNDPTEAVNKSN 645
>UNIPROTKB|F1SUA3 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:CU856034 EMBL:CU915661 Ensembl:ENSSSCT00000008869
Uniprot:F1SUA3
Length = 1185
Score = 183 (69.5 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD+CKF HD L K + C + + C KG+NC + H+ ++P
Sbjct: 273 KGKQICKYFLEGRCIKGDQCKFDHDA-ELEKRKEICKFYLQGYCTKGENCIYMHN--EFP 329
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
C+ + + C +GDNC FSH KE
Sbjct: 330 CKFYHSGAKCYQGDNCKFSHDDLTKE 355
Score = 57 (25.1 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 560 PTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQN 593
P P + P PPL A L L N K HQN
Sbjct: 891 PKPDPVSSINLPLPPLIADQRLSRLWNTKSDHQN 924
Score = 53 (23.7 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 247 IGAH-DHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSK 297
+ +H +H ED E+E+GEI D+ + + V +EK+++E+ K
Sbjct: 3 LSSHVNHLREDGELEDGEI------DDAGFEETQEQEVKEDEKQKNEKVYRK 48
Score = 43 (20.2 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 12/64 (18%), Positives = 30/64 (46%)
Query: 251 DHRAEDVEVEEGEISGHFEVDEVSID--MIIDNAVVSNEKKEDEEQVSKDVTDK-TDFPC 307
D E E + +G + ++ ++I ++ V+N K ++ +S+ + D ++F
Sbjct: 86 DSEVEHTESSHKKRTGFYRDYDIPFPQVLLISSSSVTNFKSAQQKLISRSLFDSFSNFQR 145
Query: 308 NEKC 311
+ C
Sbjct: 146 SSSC 149
>MGI|MGI:1926001 [details] [associations]
symbol:Zc3h6 "zinc finger CCCH type containing 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:1926001 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5084 EMBL:AL833780 GeneTree:ENSGT00530000063288
HOGENOM:HOG000231733 HOVERGEN:HBG063914 OrthoDB:EOG4CG081
EMBL:AK014766 EMBL:AK039171 EMBL:BC043311 EMBL:BC058173
IPI:IPI00108263 IPI:IPI00761322 UniGene:Mm.26377
ProteinModelPortal:Q8BYK8 SMR:Q8BYK8 PhosphoSite:Q8BYK8
PRIDE:Q8BYK8 Ensembl:ENSMUST00000110319 UCSC:uc008mha.2
InParanoid:Q8BYK8 Bgee:Q8BYK8 CleanEx:MM_ZC3H6
Genevestigator:Q8BYK8 GermOnline:ENSMUSG00000042851 Uniprot:Q8BYK8
Length = 1177
Score = 184 (69.8 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD CKF+HD L K + C ++ + C KG+NC + H S++P
Sbjct: 271 KGKQICKYFLEGRCIKGDHCKFNHDA-ELEKKKEVCKYYLQGYCTKGENCIYMH--SEFP 327
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
C+ + + C +GD C FSH KE
Sbjct: 328 CKFYHSGAKCYQGDKCKFSHDDLTKE 353
Score = 56 (24.8 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 252 HRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSK 297
H ED E+E+GEI D+ + D NEK+++E+ K
Sbjct: 9 HDREDGELEDGEI------DDAGFEETQDQEAKENEKQKNEKAYRK 48
Score = 52 (23.4 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 560 PTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDAL 597
P P + P PPL A L L N K HQ +L
Sbjct: 885 PKPDPVSSINLPLPPLIADQRLNRLWNTKSDHQGALSL 922
Score = 43 (20.2 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 15/74 (20%), Positives = 33/74 (44%)
Query: 150 EEDALVNDRQEHVDIQQIVNVESRSEAELQVDKG---DSNLDVPKSFDSSVDRNMDSHAS 206
+++A N++Q++ + + + E E + K + + S D S D ++DS
Sbjct: 31 DQEAKENEKQKNEKAYRKSRKKHKKEREKKKSKRRKHEKHKHNSPSGDDSSDYSLDSDVE 90
Query: 207 KPAEDSEERNSKLR 220
+ ++R S R
Sbjct: 91 RMQSSRKKRTSSYR 104
Score = 39 (18.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 185 SNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRT 221
SN + + F S + S S + S+E KLR+
Sbjct: 160 SNQEGEEDFSSQLKYYRQSQESSGSSFSKESGKKLRS 196
>UNIPROTKB|P61129 [details] [associations]
symbol:ZC3H6 "Zinc finger CCCH domain-containing protein 6"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:NOG245027 HOGENOM:HOG000231733 EMBL:AC115115 EMBL:AB111887
EMBL:BC155540 EMBL:BC167154 EMBL:AK123404 EMBL:AK127776
IPI:IPI00410656 RefSeq:NP_940983.2 UniGene:Hs.190477
ProteinModelPortal:P61129 SMR:P61129 PhosphoSite:P61129
DMDM:47117369 PaxDb:P61129 PRIDE:P61129 Ensembl:ENST00000343936
Ensembl:ENST00000409871 GeneID:376940 KEGG:hsa:376940
UCSC:uc002thq.1 CTD:376940 GeneCards:GC02P113033 HGNC:HGNC:24762
HPA:HPA036019 neXtProt:NX_P61129 PharmGKB:PA142670510
HOVERGEN:HBG063914 InParanoid:P61129 OMA:IRPQYSD OrthoDB:EOG4CG081
ChiTaRS:ZC3H6 GenomeRNAi:376940 NextBio:100656 ArrayExpress:P61129
Bgee:P61129 CleanEx:HS_ZC3H6 Genevestigator:P61129
GermOnline:ENSG00000188177 Uniprot:P61129
Length = 1189
Score = 183 (69.5 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD+CKF HD L K + C + + C KG+NC + H+ ++P
Sbjct: 273 KGKQICKYFLEGRCIKGDQCKFDHDA-ELEKRKEICKFYLQGYCTKGENCIYMHN--EFP 329
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
C+ + + C +GDNC FSH KE
Sbjct: 330 CKFYHSGAKCYQGDNCKFSHDDLTKE 355
Score = 56 (24.8 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 252 HRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSK 297
H ED E+E+GEI D+ + I + NEK++ E+ K
Sbjct: 9 HDREDGELEDGEI------DDAGFEEIQEKEAKENEKQKSEKAYRK 48
Score = 51 (23.0 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 46/214 (21%), Positives = 85/214 (39%)
Query: 560 PTPSTCTPELKPSPPLYASNLLKPLNNNKVS-HQNVDALSNHGKVSSFKNIEQSVAKSIL 618
P P + P PPL A L L N K HQN +S K+++ I + + L
Sbjct: 890 PKPDPVSSINLPLPPLIADQRLNRLWNTKSDLHQNT--VSIDPKLAAKAKINTTNREGYL 947
Query: 619 KPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDSVQSRDETP 678
+ G S+ G + L L + + ++Q S + + P
Sbjct: 948 EQ-----FGDSH---GSGAKLGDPRLQKNFDPRLHRLPNTESHQVVMKDSHASKGAPHLP 999
Query: 679 RRIPVATK--GVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHETSSSSSC 736
R P +++ G + G+ +L + K ++ L G TS+ + L++ S
Sbjct: 1000 RSNPGSSQPSGAGTSNSGSGALPPYAPKLSSSAGLPL--GTSTSVLSGISLYDPRDHGS- 1056
Query: 737 GENDAEVGNATTQIFSNSVQKSNDMPK--KTQPA 768
+ +E+ A++ S + +KS + KT+P+
Sbjct: 1057 -SSTSELATASSGENSKNQKKSGGLKSSDKTEPS 1089
Score = 45 (20.9 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 22/99 (22%), Positives = 35/99 (35%)
Query: 732 SSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAIT-------PRGLNFLSTGKALA 784
SS G + G+ ++ + S +P T ++ PR ST + LA
Sbjct: 1005 SSQPSGAGTSNSGSGALPPYAPKLSSSAGLPLGTSTSVLSGISLYDPRDHGSSSTSE-LA 1063
Query: 785 NNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSAN 823
+ N + S G + E SP + Q S N
Sbjct: 1064 TASSGENSKNQKKSGGLKSSDKTEPSPGEAILPQKPSPN 1102
Score = 43 (20.2 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 31/142 (21%), Positives = 58/142 (40%)
Query: 550 HKLPPKEQDPPTPSTCTPELKPSPPLYASN--LLKPLNNNKVSHQNVDALSNHG-KVSSF 606
H+LP E K +P L SN +P + S+ AL + K+SS
Sbjct: 974 HRLPNTESHQVVMKDSHAS-KGAPHLPRSNPGSSQP-SGAGTSNSGSGALPPYAPKLSSS 1031
Query: 607 KNIEQSVAKSILKPPALA-PKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQ 665
+ + S+L +L P+ +S L ++ G+ + KKS K +++T
Sbjct: 1032 AGLPLGTSTSVLSGISLYDPRDHGS---SSTSELATASSGENSKNQKKSGGLKSSDKTEP 1088
Query: 666 IASDSVQSRDETPRRIPVATKG 687
+++ + +P + V +G
Sbjct: 1089 SPGEAILPQKPSPN-VGVTLEG 1109
Score = 42 (19.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 20/93 (21%), Positives = 36/93 (38%)
Query: 115 DGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRS 174
DG+ E G D+ G + + E + K E A R++H ++ + R
Sbjct: 13 DGELEDGEIDDA-GFEEIQEKEAKENEKQK-----SEKAYRKSRKKHKKEREKKKSKRRK 66
Query: 175 EAELQVDKGDSNLDVPKSFDSSVDRNMDSHASK 207
+ + + S+ S DS V+ SH +
Sbjct: 67 REKHKHNSPSSDDSSDYSLDSDVEHTESSHKKR 99
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 824 PWSLPGSSFTLGHSLDHSAQG----YYRSTSNSAQRALEFATKI 863
P S PGSS G +S G Y S+SA L +T +
Sbjct: 999 PRSNPGSSQPSGAGTSNSGSGALPPYAPKLSSSAGLPLGTSTSV 1042
>DICTYBASE|DDB_G0277543 [details] [associations]
symbol:DDB_G0277543 "CCCH-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0005615
"extracellular space" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR016024 PROSITE:PS50103 SMART:SM00356
dictyBase:DDB_G0277543 GO:GO:0005615 SUPFAM:SSF48371 GO:GO:0008270
GO:GO:0003676 EMBL:AAFI02000020 eggNOG:NOG287629 RefSeq:XP_642612.1
ProteinModelPortal:Q54ZN0 EnsemblProtists:DDB0233776 GeneID:8621029
KEGG:ddi:DDB_G0277543 InParanoid:Q54ZN0 OMA:DELMIDD Uniprot:Q54ZN0
Length = 1657
Score = 176 (67.0 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 36/96 (37%), Positives = 53/96 (55%)
Query: 465 PQNLKPKTVKYCHHYLKGRCQEGDKCKFSHD-TVPLTKSTKACCHFARNSCMKGDNCPFD 523
P+ K TV C+ Y G C++G C F H+ V + K T+ C +F +SC KGD+C +
Sbjct: 1373 PKEKKELTV-VCNFYKIGMCKKGKDCTFIHEGPVEIRKPTEVCKYFKTSSCAKGDSCTYS 1431
Query: 524 HDLSKYPCENFVAKGFCNRGDNCLFSHKL--PPKEQ 557
HDL PC+ + + C NC + H+L PP +Q
Sbjct: 1432 HDLKIEPCKYYNSPTGCTNV-NCQYDHRLITPPLQQ 1466
Score = 67 (28.6 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 148 VHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASK 207
V +ED +D D + + + E EL +D +++ D S S N +
Sbjct: 1183 VDDEDDDEDDDDNEDDEEDDEDGDGEDEDELMIDDTNTSFDQSISTSSKKRGNTLLLSDS 1242
Query: 208 PAEDSEERNSKLRTNS 223
++D E N KL+ NS
Sbjct: 1243 DSDDDNENNKKLKLNS 1258
Score = 52 (23.4 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 130 QRMLMDELEHILK--GDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNL 187
Q+ D+LE LK F E + E++D Q + +S L V + +S L
Sbjct: 457 QQQHQDQLEQSLKELSSDPFKRETFLTIIGNPENLDNQSFIQKIKQS---LIVVQPNSPL 513
Query: 188 DVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNS 223
++PKS SS + S S + N+ TN+
Sbjct: 514 NLPKSSSSS---SSSSSGSNTNTNIANNNNTTTTNT 546
Score = 51 (23.0 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 26/110 (23%), Positives = 44/110 (40%)
Query: 722 SNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPR-GLNFLST- 779
+NN + +SS S N + N TT +N+ +N T P +T NF
Sbjct: 1498 NNNSPILNSSSLLSSNSNSPILTNTTTT--TNTTLSTN---LSTPPLLTSNFDFNFQDNQ 1552
Query: 780 -----GKALAN-NTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSAN 823
N N I+NN ++ ++ N + + N N + N++ N
Sbjct: 1553 DENNYNNNYNNINNINNNNNNNNNNNNNINNNNNNNNNNNNNNNNNNNNN 1602
Score = 51 (23.0 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 259 VEEGEISGHFEVDEVSIDMIIDN---AVVSNEKKEDEEQVSKDVTDKTD 304
+E G+I + S II N ++S+ KKE+EE+ + D D
Sbjct: 1125 IENGDIVNIIKEISSSSSPIITNKEETILSDNKKEEEEENDDNQDDDQD 1173
Score = 45 (20.9 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 18/75 (24%), Positives = 28/75 (37%)
Query: 150 EEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPA 209
E D +D Q+ + + NV+ + E D D D D M +
Sbjct: 1163 ENDDNQDDDQDDENDENNENVDDEDDDEDDDDNEDDEEDDEDGDGEDEDELMIDDTNTSF 1222
Query: 210 EDSEERNSKLRTNSL 224
+ S +SK R N+L
Sbjct: 1223 DQSISTSSKKRGNTL 1237
Score = 44 (20.5 bits), Expect = 3.0e-09, Sum P(4) = 3.0e-09
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 251 DHRAEDVEVEEGEISGHFEVDEVSID---MIIDNAVVSNEKKEDEEQVSKDVTDKTDFPC 307
D ED E ++ + G E DE+ ID D ++ ++ KK + D D
Sbjct: 1192 DDDNEDDEEDDEDGDGEDE-DELMIDDTNTSFDQSISTSSKKRGNTLLLSDSDSDDDNEN 1250
Query: 308 NEKCGGTEKFSDSTSVCLNAVDHNASGGTVE 338
N+K K + S+ N D+N + ++
Sbjct: 1251 NKKL----KLNSEDSLIQN--DNNYTSDEID 1275
Score = 43 (20.2 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 15/81 (18%), Positives = 33/81 (40%)
Query: 139 HILKGDVIFVHEE-----DALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSF 193
+I GD++ + +E ++ +++E + E ++ D+ D N + ++
Sbjct: 1124 NIENGDIVNIIKEISSSSSPIITNKEETILSDNKKEEEEENDDNQDDDQDDENDENNENV 1183
Query: 194 DSSVDRNMDSHASKPAEDSEE 214
D D D ED E+
Sbjct: 1184 DDEDDDEDDDDNEDDEEDDED 1204
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 184 DSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNSL 224
D N+ + S+ + SH S AE + SKL++ +L
Sbjct: 210 DDNISISAPSCQSLTKFALSHDSNYAEVKQIIRSKLQSLTL 250
>MGI|MGI:1930128 [details] [associations]
symbol:Zc3h8 "zinc finger CCCH type containing 8"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0033085 "negative
regulation of T cell differentiation in thymus" evidence=ISO]
[GO:0043029 "T cell homeostasis" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;IMP]
[GO:0046677 "response to antibiotic" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070245 "positive regulation
of thymocyte apoptotic process" evidence=ISO] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:1930128
GO:GO:0005634 GO:GO:0006915 GO:GO:0045892 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0046677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003723 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OMA:PKKFRHS OrthoDB:EOG454907 EMBL:AF061961 EMBL:BC048687
IPI:IPI00330691 RefSeq:NP_065619.2 UniGene:Mm.11675
ProteinModelPortal:Q9JJ48 SMR:Q9JJ48 PhosphoSite:Q9JJ48
PRIDE:Q9JJ48 Ensembl:ENSMUST00000028866 GeneID:57432 KEGG:mmu:57432
InParanoid:Q9JJ48 NextBio:313802 Bgee:Q9JJ48 CleanEx:MM_ZC3H8
Genevestigator:Q9JJ48 GermOnline:ENSMUSG00000027387 Uniprot:Q9JJ48
Length = 305
Score = 171 (65.3 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+ +C +GD+CKF HD + K + C ++ + C KG+NC + H S+YP
Sbjct: 206 KGKQVCKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKYYVQGYCTKGENCLYLH--SEYP 262
Query: 531 CENFVAKGFCNRGDNCLFSH 550
C+ + C +GD+C FSH
Sbjct: 263 CKFYHTGTKCYQGDHCNFSH 282
Score = 128 (50.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 501 KSTKACCHFARNSCMKGDNCPFDHDLS----KYPCENFVAKGFCNRGDNCLFSHKLPP 554
K + C +F C+KGD C FDHD K C+ +V +G+C +G+NCL+ H P
Sbjct: 206 KGKQVCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYV-QGYCTKGENCLYLHSEYP 262
>UNIPROTKB|F1PWF3 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:AAEX03010906 Ensembl:ENSCAFT00000011475 Uniprot:F1PWF3
Length = 1166
Score = 183 (69.5 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD+CKF HD L K + C + + C KG+NC + H+ ++P
Sbjct: 263 KGKQICKYFLEGRCIKGDQCKFDHDA-ELEKRKEICKFYLQGYCTKGENCIYMHN--EFP 319
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
C+ + + C +GDNC FSH KE
Sbjct: 320 CKFYHSGAKCYQGDNCKFSHDDLTKE 345
Score = 52 (23.4 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 252 HRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSK 297
H ED E+E+GEI D+ ++ I + +EK ++E+ K
Sbjct: 9 HDREDGELEDGEI------DDAGLEEIQEQEAKEDEKHKNEKAYRK 48
Score = 48 (22.0 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 560 PTPSTCTPELKPSPPLYASNLLKPLNNNKVS-HQN 593
P P + P PPL A L L N K HQN
Sbjct: 872 PKPDPVSSINLPLPPLIADQRLNRLWNTKSDLHQN 906
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 376 RNKRKASRGEEGISSFSASLDDST 399
R K+K+ R + S S DDS+
Sbjct: 57 REKKKSKRRKREKHKHSPSSDDSS 80
>RGD|1310458 [details] [associations]
symbol:Zc3h8 "zinc finger CCCH type containing 8" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA;ISO] [GO:0043029 "T cell
homeostasis" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0046677 "response
to antibiotic" evidence=IEA;ISO] [GO:0070245 "positive regulation
of thymocyte apoptotic process" evidence=IEA;ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
RGD:1310458 GO:GO:0005634 GO:GO:0043565 GO:GO:0008270 GO:GO:0046677
GO:GO:0003700 GO:GO:0070245 GO:GO:0043029 EMBL:CH473949
GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OrthoDB:EOG454907 EMBL:BC079122 IPI:IPI00464661
RefSeq:NP_001012090.1 UniGene:Rn.137486 SMR:Q6AYB0
Ensembl:ENSRNOT00000023845 GeneID:311414 KEGG:rno:311414
UCSC:RGD:1310458 InParanoid:Q6AYB0 NextBio:663570
Genevestigator:Q6AYB0 Uniprot:Q6AYB0
Length = 305
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+ +C +GD+CKF HD + K + C ++ + C KG+NC + H+ +YP
Sbjct: 206 KGKQVCKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKYYVQGYCTKGENCLYLHN--EYP 262
Query: 531 CENFVAKGFCNRGDNCLFSH 550
C+ + C +GD+C FSH
Sbjct: 263 CKFYHTGTKCYQGDHCNFSH 282
Score = 128 (50.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 501 KSTKACCHFARNSCMKGDNCPFDHDLS----KYPCENFVAKGFCNRGDNCLFSHKLPP 554
K + C +F C+KGD C FDHD K C+ +V +G+C +G+NCL+ H P
Sbjct: 206 KGKQVCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYV-QGYCTKGENCLYLHNEYP 262
>UNIPROTKB|Q17QY2 [details] [associations]
symbol:ZC3H8 "Zinc finger CCCH-type containing 8"
species:9913 "Bos taurus" [GO:0070245 "positive regulation of
thymocyte apoptotic process" evidence=IEA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043029 "T cell homeostasis"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0043565
GO:GO:0008270 GO:GO:0046677 GO:GO:0003700 GO:GO:0070245
GO:GO:0043029 GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OMA:PKKFRHS OrthoDB:EOG454907 EMBL:DAAA02030062 EMBL:BC118120
IPI:IPI00685661 RefSeq:NP_001068759.1 UniGene:Bt.29569 SMR:Q17QY2
Ensembl:ENSBTAT00000021230 GeneID:506983 KEGG:bta:506983
InParanoid:Q17QY2 NextBio:20867839 Uniprot:Q17QY2
Length = 303
Score = 164 (62.8 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++L+ +C +GD+CKF HD + K + C + + C +G+NC + H+ +YPC+ +
Sbjct: 210 CKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKFYVQGYCTRGENCLYLHN--EYPCKFYH 266
Query: 536 AKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPS 572
C +G++C FSH E PE K S
Sbjct: 267 TGAKCYQGEHCKFSHAPLTDETQELLAKILDPERKSS 303
>UNIPROTKB|A6NMK7 [details] [associations]
symbol:CPSF4L "Putative cleavage and polyadenylation
specificity factor subunit 4-like protein" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 eggNOG:COG5084 EMBL:AC087301 EMBL:BC157870
IPI:IPI00376104 RefSeq:NP_001123357.1 UniGene:Hs.534707
ProteinModelPortal:A6NMK7 SMR:A6NMK7 PhosphoSite:A6NMK7
PRIDE:A6NMK7 Ensembl:ENST00000344935 GeneID:642843 KEGG:hsa:642843
UCSC:uc010dfk.1 CTD:642843 GeneCards:GC17M071244 HGNC:HGNC:33632
HPA:HPA044047 neXtProt:NX_A6NMK7 PharmGKB:PA162382768
HOGENOM:HOG000212457 HOVERGEN:HBG051108 OMA:HVKPASK
GenomeRNAi:642843 NextBio:114229 Bgee:A6NMK7 CleanEx:HS_CPSF4L
Genevestigator:A6NMK7 Uniprot:A6NMK7
Length = 179
Score = 144 (55.7 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 37/102 (36%), Positives = 50/102 (49%)
Query: 464 LP-QNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPF 522
LP Q + C+ + KG C++G C F HD + C H+ R C KGD+C F
Sbjct: 28 LPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHDR---GEKMVVCKHWLRGLCKKGDHCKF 84
Query: 523 DH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
H DL++ P F +K G C+ + C F H P K QD P
Sbjct: 85 LHQYDLTRMPECYFYSKFGDCSNKE-CSFLHVKPAFKSQDCP 125
Score = 111 (44.1 bits), Expect = 0.00074, P = 0.00074
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCEN-- 533
C H+L+G C++GD CKF H LT+ + C +++ C F H + ++
Sbjct: 68 CKHWLRGLCKKGDHCKFLHQ-YDLTRMPE-CYFYSKFGDCSNKECSFLHVKPAFKSQDCP 125
Query: 534 FVAKGFCNRGDNCLFSH 550
+ +GFC G C + H
Sbjct: 126 WYDQGFCKDGPLCKYRH 142
>UNIPROTKB|F1SUA1 [details] [associations]
symbol:ZC3H8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070245 "positive regulation of thymocyte apoptotic
process" evidence=IEA] [GO:0046677 "response to antibiotic"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043029 "T cell homeostasis" evidence=IEA]
[GO:0033085 "negative regulation of T cell differentiation in
thymus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0043565 GO:GO:0008270
GO:GO:0046677 GO:GO:0003700 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 GeneTree:ENSGT00530000063288 OMA:PKKFRHS
EMBL:FP326709 Ensembl:ENSSSCT00000008872 Uniprot:F1SUA1
Length = 307
Score = 162 (62.1 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++L+ +C +GD+CKF HD + K + C + + C +G+NC + H+ +YPC+ +
Sbjct: 214 CKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKFYVQGYCTRGENCLYLHN--EYPCKFYH 270
Query: 536 AKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPS 572
C +G+ C FSH E PE K S
Sbjct: 271 TGAKCYQGEYCKFSHAPLTAETQELLAKVLDPEKKSS 307
>UNIPROTKB|E2RFS8 [details] [associations]
symbol:ZC3H8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070245 "positive regulation of thymocyte
apoptotic process" evidence=IEA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043029 "T cell homeostasis"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0043565
GO:GO:0008270 GO:GO:0046677 GO:GO:0003700 GO:GO:0070245
GO:GO:0043029 GO:GO:0033085 GeneTree:ENSGT00530000063288
EMBL:AAEX03010906 Ensembl:ENSCAFT00000011466 OMA:ECERIPK
NextBio:20857524 Uniprot:E2RFS8
Length = 393
Score = 164 (62.8 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+ +C +GD+CKF HD + K + C + + C +G+NC + H+ +YP
Sbjct: 295 KGKQICKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKFYVQGYCTRGENCLYLHN--EYP 351
Query: 531 CENFVAKGFCNRGDNCLFSHK-LPPKEQD 558
C+ + C +G+ C FSH L P+ Q+
Sbjct: 352 CKFYHTGTKCYQGEYCKFSHSPLTPETQE 380
>UNIPROTKB|F1LTU5 [details] [associations]
symbol:Zc3h6 "Protein Zc3h6" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
IPI:IPI00870619 Ensembl:ENSRNOT00000024322 RGD:1311061
ArrayExpress:F1LTU5 Uniprot:F1LTU5
Length = 1171
Score = 168 (64.2 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 34/87 (39%), Positives = 49/87 (56%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD CKF+HD L K + C ++ + C KG+NC + H++
Sbjct: 260 KGKQICKYFLEGRCIKGDHCKFNHDA-ELEKKKEVCKYYLQGYCTKGENCIYMHNILYRN 318
Query: 531 CENFVAKGF-CNRGDNCLFSHKLPPKE 556
C F G C +GD C FSH KE
Sbjct: 319 C--FYHSGAKCYQGDKCKFSHDDLTKE 343
Score = 52 (23.4 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 560 PTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDAL 597
P P + P PPL A L L N K HQ +L
Sbjct: 875 PKPDPVSSINLPLPPLIADQRLSRLWNTKSDHQGTLSL 912
Score = 52 (23.4 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 255 EDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSK 297
ED E+E+GEI D+ + D+ NEK+++E+ K
Sbjct: 2 EDGELEDGEI------DDAGFEETQDHEAKENEKQKNEKAYRK 38
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 331 NASGGTVELQETVRNETQCKTKIFADGTATMAIDPDRYNSMPG 373
N S G + L +R + C ++ A+D + S PG
Sbjct: 200 NVSHGHL-LPRKIRRKEHCGARVIKGPHVFSAVDDFQEYSKPG 241
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 823 NPWSLPGSSFTLG-HS 837
NP LPGSS +G HS
Sbjct: 503 NPPLLPGSSEVVGPHS 518
>UNIPROTKB|Q8N5P1 [details] [associations]
symbol:ZC3H8 "Zinc finger CCCH domain-containing protein 8"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0070245 "positive
regulation of thymocyte apoptotic process" evidence=IMP]
[GO:0046677 "response to antibiotic" evidence=IDA] [GO:0033085
"negative regulation of T cell differentiation in thymus"
evidence=IMP] [GO:0043029 "T cell homeostasis" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0006915 GO:GO:0045892 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0046677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003723 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 EMBL:AF334161 EMBL:BC032001 IPI:IPI00307760
RefSeq:NP_115883.2 UniGene:Hs.418416 ProteinModelPortal:Q8N5P1
SMR:Q8N5P1 IntAct:Q8N5P1 PhosphoSite:Q8N5P1 DMDM:47117585
PaxDb:Q8N5P1 PRIDE:Q8N5P1 DNASU:84524 Ensembl:ENST00000272570
Ensembl:ENST00000409573 GeneID:84524 KEGG:hsa:84524 UCSC:uc021vmw.1
CTD:84524 GeneCards:GC02M112973 H-InvDB:HIX0002377 HGNC:HGNC:30941
HPA:HPA034804 neXtProt:NX_Q8N5P1 PharmGKB:PA134956342
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
InParanoid:Q8N5P1 OMA:PKKFRHS OrthoDB:EOG454907 GenomeRNAi:84524
NextBio:74347 ArrayExpress:Q8N5P1 Bgee:Q8N5P1 CleanEx:HS_ZC3H8
Genevestigator:Q8N5P1 GermOnline:ENSG00000144161 Uniprot:Q8N5P1
Length = 291
Score = 163 (62.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+ +C +GD+CKF HD + K + C + + C +G+NC + H+ +YP
Sbjct: 192 KGKQICKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKFYVQGYCTRGENCLYLHN--EYP 248
Query: 531 CENFVAKGFCNRGDNCLFSHK-LPPKEQD 558
C+ + C +G+ C FSH L P+ Q+
Sbjct: 249 CKFYHTGTKCYQGEYCKFSHAPLTPETQE 277
Score = 37 (18.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 144 DVIFVHEEDALVNDRQEHVDIQQIVNVESRSEA 176
D+ ED + Q+++ +++ N E+
Sbjct: 80 DICSQESEDNFAKELQQYIQAREMANAAQPEES 112
>UNIPROTKB|D4A5G7 [details] [associations]
symbol:LOC678741 "Protein LOC678741" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:23211 IPI:IPI00950508 RefSeq:XP_001053214.2
Ensembl:ENSRNOT00000065122 GeneID:678741 KEGG:rno:678741
ArrayExpress:D4A5G7 Uniprot:D4A5G7
Length = 1255
Score = 176 (67.0 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++++GRC GD C FSHD + L K + C + C + +NCP+ H +PC+ +
Sbjct: 346 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 402
Query: 536 AKGFCNRGDNCLFSH 550
G C GD+C+FSH
Sbjct: 403 TTGNCINGDDCMFSH 417
Score = 47 (21.6 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 553 PPKEQDPPTPSTCTPELK-PS-PPLYASNLLKPLNNNKV 589
PP PP P P++ P+ PL L + + N K+
Sbjct: 491 PPPPPPPPPPPPGPPQMAMPAHEPLSPQQLQQDMYNKKI 529
Score = 47 (21.6 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 30/111 (27%), Positives = 40/111 (36%)
Query: 554 PKEQDPPTPSTCTPELKP-SPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQS 612
P DP T + P+ + S L N+ P + K S V ++ K +
Sbjct: 985 PGSTDPSTSGSNLPDFELLSRILKTVNVNTPGQSEKPSDPRVRKTPTDPRLQ--KPADPG 1042
Query: 613 VAKSILKP-------PALAPKGISYLFLGKSS--FLEASNLGQGISSPKKS 654
A KP PA +P G S L A LGQG SS + S
Sbjct: 1043 AASRAAKPCPTEASPPAASPSGDSPPATAPYDPRVLAAGGLGQGSSSGQSS 1093
Score = 46 (21.3 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 17/77 (22%), Positives = 33/77 (42%)
Query: 552 LP-PKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIE 610
LP PK+ PP P+ P L+ S P N + + D ++ + F+ +
Sbjct: 945 LPIPKQDVPPVPAALQSLPALDPRLHRSTPPGPPNTRQQRPGSTDPSTSGSNLPDFELLS 1004
Query: 611 QSVAKSI-LKPPALAPK 626
+ + K++ + P + K
Sbjct: 1005 R-ILKTVNVNTPGQSEK 1020
Score = 43 (20.2 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 175 EAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSK 218
E EL+ D + D P + S + H S E+ R K
Sbjct: 12 EGELEDDGAEDIQDTPGGQERSRKEKGEKHHSDSDEEKSHRRLK 55
Score = 43 (20.2 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 554 PKEQDPPTPSTCTPELKPSPPLYASNLLKPLN 585
P + PP P P P PP A +PL+
Sbjct: 486 PMQGGPPPPPPPPPP-PPGPPQMAMPAHEPLS 516
Score = 37 (18.1 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 255 EDVEVEEGEI 264
ED E+EEGE+
Sbjct: 6 EDGELEEGEL 15
>MGI|MGI:2682314 [details] [associations]
symbol:Zc3h4 "zinc finger CCCH-type containing 4"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:2682314
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:NOG245027
CTD:23211 HOGENOM:HOG000231733 HOVERGEN:HBG108366 OrthoDB:EOG4Z62N1
EMBL:AC148972 EMBL:AK129275 IPI:IPI00625723 IPI:IPI00750931
RefSeq:NP_941033.2 UniGene:Mm.333594 UniGene:Mm.490954
ProteinModelPortal:Q6ZPZ3 SMR:Q6ZPZ3 STRING:Q6ZPZ3
PhosphoSite:Q6ZPZ3 PaxDb:Q6ZPZ3 PRIDE:Q6ZPZ3 GeneID:330474
KEGG:mmu:330474 UCSC:uc009fht.1 UCSC:uc012fah.1 InParanoid:Q6ZPZ3
NextBio:399395 CleanEx:MM_ZC3H4 Genevestigator:Q6ZPZ3
GermOnline:ENSMUSG00000059273 Uniprot:Q6ZPZ3
Length = 1304
Score = 176 (67.0 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++++GRC GD C FSHD + L K + C + C + +NCP+ H +PC+ +
Sbjct: 395 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 451
Query: 536 AKGFCNRGDNCLFSH 550
G C GD+C+FSH
Sbjct: 452 TTGNCINGDDCMFSH 466
Score = 48 (22.0 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 553 PPKEQDPPTPSTCTPELK-PS-PPLYASNLLKPLNNNKV 589
PP PP P P++ P+ PL L + + N K+
Sbjct: 540 PPPPPPPPPPPPGPPQMSLPTHEPLSPQQLQQDMYNKKI 578
Score = 42 (19.8 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 175 EAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSK 218
E EL+ D + D P + S + H S E+ R K
Sbjct: 61 EGELEDDGAEEVQDPPGGQERSRKEKGEKHHSDSEEEKSHRRLK 104
Score = 42 (19.8 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 30/110 (27%), Positives = 41/110 (37%)
Query: 554 PKEQDPPTPSTCTPELKP-SPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKN-IEQ 611
P DP T + P+ + S L N+ P + K S V ++ + +
Sbjct: 1033 PGSTDPSTSGSNLPDFELLSRILKTVNVNTPGQSEKPSDPRVRKTPTDPRLQKPADPVAA 1092
Query: 612 S-VAKSI---LKPPALAPKGISY---LFLGKSSFLEASNLGQGISSPKKS 654
S AK PPA +P G S L A LGQG SS + S
Sbjct: 1093 SRAAKPCPTEASPPAASPSGDSSPPATAPYDPRVLAAGGLGQGSSSGQSS 1142
Score = 39 (18.8 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 251 DHRAEDVEVEEGEIS--GHFEVDE 272
D R ED E+EEGE+ G EV +
Sbjct: 52 DDR-EDGELEEGELEDDGAEEVQD 74
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 554 PKEQDPPTPSTCTPELKPSPPLYASNLLKPLN 585
P + PP P P P PP + +PL+
Sbjct: 535 PMQGGPPPPPPPPPP-PPGPPQMSLPTHEPLS 565
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 552 LP-PKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNK 588
LP PK+ PP P+ P L+ S P N +
Sbjct: 994 LPIPKQDVPPVPAALQSLPALDPRLHRSTPPGPPNTRQ 1031
>UNIPROTKB|F1MCW9 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:DAAA02030058 EMBL:DAAA02030059 EMBL:DAAA02030060
EMBL:DAAA02030061 IPI:IPI00710219 Ensembl:ENSBTAT00000027514
Uniprot:F1MCW9
Length = 1169
Score = 183 (69.5 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD+CKF HD L K + C + + C KG+NC + H+ ++P
Sbjct: 264 KGKQICKYFLEGRCIKGDQCKFDHDA-ELEKRKEICKFYLQGYCTKGENCIYMHN--EFP 320
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
C+ + + C +GDNC FSH KE
Sbjct: 321 CKFYHSGAKCYQGDNCKFSHDDLTKE 346
Score = 41 (19.5 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 560 PTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSS 605
P P + P PPL A L L N K S D + K+++
Sbjct: 873 PKPDPVSSINLPLPPLIADQRLSRLWNTK-SDLRQDTVPTDRKLAA 917
Score = 39 (18.8 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 255 EDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSK 297
ED E+E+GEI D+ + + +EK+++++ K
Sbjct: 12 EDGELEDGEI------DDAGFEETQEQEAKEDEKQKNQKAYRK 48
Score = 38 (18.4 bits), Expect = 6.5e-08, Sum P(3) = 6.5e-08
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 551 KLPPKEQDPPTPSTCTPELKPS 572
+L K Q+ PS+ P+ PS
Sbjct: 654 RLTQKYQEDEEPSSTQPQRAPS 675
>UNIPROTKB|E1BHZ4 [details] [associations]
symbol:ZC3H4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:SPNGRPM
EMBL:DAAA02047406 EMBL:DAAA02047407 IPI:IPI00699712
Ensembl:ENSBTAT00000012237 Uniprot:E1BHZ4
Length = 1305
Score = 176 (67.0 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++++GRC GD C FSHD + L K + C + C + +NCP+ H +PC+ +
Sbjct: 394 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 450
Query: 536 AKGFCNRGDNCLFSH 550
G C GD+C+FSH
Sbjct: 451 TTGNCINGDDCMFSH 465
Score = 50 (22.7 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 552 LPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQ 611
LP +E PP P+ P L+ + P N+ + + + DA + + F+ + +
Sbjct: 989 LPKQEAAPPVPAALQSLPALDPRLHRAAASGPPNSRQRAGNSADAGAAGSSLPDFELLSR 1048
Query: 612 SVAKSILKPPALAPKG 627
+ K++ LA G
Sbjct: 1049 -ILKTVNVTGPLATPG 1063
Score = 40 (19.1 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 553 PPKEQDPPTPSTCTPELKPSPPLYASNLLKP 583
PP PP P P P PL A L P
Sbjct: 539 PPPPPPPPPP----PPGPPQMPLPAHEPLSP 565
Score = 39 (18.8 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 251 DHRAEDVEVEEGEIS--GHFEVDEVS 274
D R ED E+EEGE+ G E + S
Sbjct: 51 DDR-EDGELEEGELEDDGAEETQDTS 75
Score = 37 (18.1 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 175 EAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSK 218
E EL+ D + D + S + H S E+ R K
Sbjct: 60 EGELEDDGAEETQDTSGGPERSRKEKGEKHHSDSDEEKSHRRLK 103
>UNIPROTKB|E1C259 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:AADN02044292 IPI:IPI00570793 Ensembl:ENSGALT00000013458
Uniprot:E1C259
Length = 1189
Score = 169 (64.5 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +G++CKF HD + K + C + + C KG+NC + H+ ++P
Sbjct: 264 KGKQICKYFLEGRCIKGEQCKFDHDA-EIEKKKEICKFYIQGYCTKGENCIYLHN--EFP 320
Query: 531 CENFVAKGFCNRGDNCLFSH 550
C+ + C +GD C FSH
Sbjct: 321 CKFYHTGAKCYQGDKCKFSH 340
Score = 54 (24.1 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 66/269 (24%), Positives = 100/269 (37%)
Query: 560 PTPSTCTPELKPSPPLYASNLLKPLNNNKVS-HQNV---D----ALSNHGKVSSFKNIEQ 611
P P + P PPL A L L N K H N D A + + V ++Q
Sbjct: 887 PKPDPVSSINLPLPPLIADQRLNKLRNLKNDPHPNAMPADPRLAAKAKNNLVGRSGYLDQ 946
Query: 612 SVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDSV 671
S L + + L ++ G++ K+S SKF + A+ A+ S
Sbjct: 947 SADSHASSSSKLGDPRLQKNVDPRLHRLSNTDTYHGVT--KESHPSKFDPRLARSAASSS 1004
Query: 672 QSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHE-- 729
Q P A + L L +SG +L G SL + L++
Sbjct: 1005 Q-----PSEAAAAKPDPDALPPYAPKLS-ASGVRL---------GTSGSLLSGISLYDPR 1049
Query: 730 --TSSSSSCGENDAEVG-NATTQIFSNSVQK----SND--MPKKTQPAI-TPRGLNFLST 779
+SSS + + E G N I NS + S D +PK P G ++
Sbjct: 1050 DHSSSSDAAPASSGENGENQKKSILKNSAKNDPSLSEDVSLPKPASGVEKNPEGSTEATS 1109
Query: 780 GKALANNTISNNQARLRSSAGDVINRSLE 808
KA +N S +QA+ S+A V N ++
Sbjct: 1110 DKANSN---SKSQAKHSSAAPAVHNLPIQ 1135
Score = 40 (19.1 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 249 AHDHRAEDVEVEEGEI 264
A D R ED E+E+GEI
Sbjct: 9 AGDER-EDGELEDGEI 23
>UNIPROTKB|Q9UPT8 [details] [associations]
symbol:ZC3H4 "Zinc finger CCCH domain-containing protein 4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:NOG245027
EMBL:AB028987 EMBL:AL050155 IPI:IPI00187011 PIR:T08781
RefSeq:NP_055983.1 UniGene:Hs.104661 PDB:2CQE PDBsum:2CQE
ProteinModelPortal:Q9UPT8 SMR:Q9UPT8 IntAct:Q9UPT8
PhosphoSite:Q9UPT8 DMDM:94707996 PaxDb:Q9UPT8 PRIDE:Q9UPT8
Ensembl:ENST00000253048 GeneID:23211 KEGG:hsa:23211 UCSC:uc002pga.4
CTD:23211 GeneCards:GC19M047569 HGNC:HGNC:17808 HPA:HPA040934
HPA:HPA041068 neXtProt:NX_Q9UPT8 PharmGKB:PA162409534
HOGENOM:HOG000231733 HOVERGEN:HBG108366 InParanoid:Q9UPT8
OMA:SPNGRPM OrthoDB:EOG4Z62N1 ChiTaRS:ZC3H4
EvolutionaryTrace:Q9UPT8 GenomeRNAi:23211 NextBio:44759
PMAP-CutDB:Q9UPT8 Bgee:Q9UPT8 CleanEx:HS_ZC3H4
Genevestigator:Q9UPT8 GermOnline:ENSG00000130749 Uniprot:Q9UPT8
Length = 1303
Score = 176 (67.0 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++++GRC GD C FSHD + L K + C + C + +NCP+ H +PC+ +
Sbjct: 396 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 452
Query: 536 AKGFCNRGDNCLFSH 550
G C GD+C+FSH
Sbjct: 453 TTGNCINGDDCMFSH 467
Score = 47 (21.6 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 554 PKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNV 594
P + PP P P P PP + +PL+ ++ Q++
Sbjct: 536 PMQGGPPPPPPPPPP-PPGPPQMPMPVHEPLSPQQLQQQDM 575
Score = 43 (20.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 549 SHKLP-PKEQDPPTPSTCTPELKPSPP 574
S+ P PK P +T TP + +PP
Sbjct: 1217 SYNRPRPKAAAAPAATTATPPPEGAPP 1243
Score = 41 (19.5 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 553 PPKEQDPPTPSTCTPELKPSP---PLYASNLLKP-LNNNKV 589
PP PP P P++ P P PL L + + N K+
Sbjct: 541 PPPPPPPPPPPPGPPQM-PMPVHEPLSPQQLQQQDMYNKKI 580
Score = 41 (19.5 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 552 LPPKEQD--PPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNI 609
LP +QD PP P+ P L+ + P N + + D+ + + F+ +
Sbjct: 987 LPIPKQDAVPPVPAALQSMPTLDPRLHRAATAGPPNARQRPGASTDSSTQGANLPDFELL 1046
Query: 610 EQSVAKSILKPPALAPKGIS 629
+ + K++ + A G S
Sbjct: 1047 SR-ILKTVNATGSSAAPGSS 1065
Score = 39 (18.8 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 251 DHRAEDVEVEEGEIS--GHFEVDEVS 274
D R ED E+EEGE+ G E + S
Sbjct: 52 DDR-EDGELEEGELEDDGAEETQDTS 76
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 175 EAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSK 218
E EL+ D + D + S + H S E+ R K
Sbjct: 61 EGELEDDGAEETQDTSGGPERSRKEKGEKHHSDSDEEKSHRRLK 104
>UNIPROTKB|F1NHU3 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793
EMBL:AADN02037362 EMBL:AADN02037363 IPI:IPI00580233
Ensembl:ENSGALT00000028087 OMA:CNRGESC Uniprot:F1NHU3
Length = 377
Score = 156 (60.0 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNS 513
R L + ++ + K K +YC +Y + G+C G+ C + HD P + C F R +
Sbjct: 96 RSLAI--IRQAKQKKEKKKEYCMYYNRFGKCNRGENCPYIHD--P--EKVAVCTRFLRGT 149
Query: 514 CMKGDN-CPFDHDLSK--YPCENFVAKGFCNRGDNCLFSH 550
C K D CPF H +SK P ++ KG CN NC +SH
Sbjct: 150 CKKTDGKCPFSHKVSKDKMPVCSYFLKGICNNS-NCPYSH 188
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 43/138 (31%), Positives = 62/138 (44%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++LKG C + C +SH V +++ + C F + C G+ C H L C +F
Sbjct: 171 CSYFLKGICNNSN-CPYSH--VYVSRKAEVCQDFLKGYCPMGEKCKKKHTLV---CPDFA 224
Query: 536 AKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVD 595
KG C RG C H P K++ +P C E PP L + N N V Q
Sbjct: 225 KKGICPRGACCKLLH--PKKKRH--SPGNCAGE-DGDPPSKWRRLWEETNRN-VPAQ--- 275
Query: 596 ALSNHGKVSSFKNIEQSV 613
LS+ G+V + E+ V
Sbjct: 276 -LSDDGEVPGPSSTEEDV 292
>UNIPROTKB|I3LVF0 [details] [associations]
symbol:I3LVF0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:CU655901
Ensembl:ENSSSCT00000025766 OMA:REGSSAH Uniprot:I3LVF0
Length = 438
Score = 155 (59.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 42/127 (33%), Positives = 59/127 (46%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNS 513
R L + R + Q + + +YC +Y + GRC G C + HD P + C F R +
Sbjct: 151 RSLAIVR-QARQRRRKRKQEYCMYYNRFGRCNRGQHCPYIHD--P--EKVAVCTRFVRGT 205
Query: 514 CMKGDN-CPFDHDLSK--YPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELK 570
C K D CPF H +SK P ++ KG C+ NC +SH + + CT LK
Sbjct: 206 CKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNS-NCPYSHVYVSRRAE-----VCTDFLK 259
Query: 571 PSPPLYA 577
PL A
Sbjct: 260 GYCPLGA 266
Score = 139 (54.0 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 56/217 (25%), Positives = 88/217 (40%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++LKG C + C +SH V +++ + C F + C G C H L C +F
Sbjct: 227 CSYFLKGICSNSN-CPYSH--VYVSRRAEVCTDFLKGYCPLGAKCKKKHTLL---CPDFS 280
Query: 536 AKGFCNRGDNCLFSHKLPPK-EQDPPTPSTCTPELKPSP---PLYASNLLKPLNNNKVSH 591
+G C RG C H+ + + TP+ P + S P +S +P S
Sbjct: 281 RRGVCPRGTQCQLLHRNRKRLGRRAATPTAPEPRSRASTSHGPRKSSGAQRPARQT-TSS 339
Query: 592 QNVDALSNHGKVSSFKNIEQ-SVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISS 650
+A + SS + + S + S PP+ + + L L + +A++ G G SS
Sbjct: 340 PTAEAAGSASPPSSPRVLPAASSSPSPCSPPSASASPSASLSLDQ----DAASAGTGSSS 395
Query: 651 PKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKG 687
K S F + + S Q TPR P G
Sbjct: 396 LSKLPS--FISLQSS-PSPGGQPGARTPRSPPTKDSG 429
>POMBASE|SPAC227.08c [details] [associations]
symbol:yth1 "mRNA cleavage and polyadenylation
specificity factor complex Yth1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IC] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
PomBase:SPAC227.08c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
KO:K14404 OrthoDB:EOG4PG99D PIR:T50164 RefSeq:NP_592962.1
ProteinModelPortal:Q9UTD1 SMR:Q9UTD1 STRING:Q9UTD1
EnsemblFungi:SPAC227.08c.1 GeneID:2541506 KEGG:spo:SPAC227.08c
NextBio:20802605 Uniprot:Q9UTD1
Length = 170
Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/93 (32%), Positives = 42/93 (45%)
Query: 471 KTVKYCHHYL-KGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKY 529
K + CH Y +G C G++C + H + +K C + C G C H
Sbjct: 77 KKMPPCHFYAERGWCSNGEECLYLH--LDPSKQVGVCAWYNMGFCPLGPICRGKHVRKPR 134
Query: 530 PCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTP 562
PC ++A GFC G NC +H PK +PP P
Sbjct: 135 PCPKYLA-GFCPLGPNCPDAH---PKHSEPPHP 163
Score = 117 (46.2 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 506 CCHFARNSCMKGDNCPFDHD--LSKYP-CENFVAKGFCNRGDNCLFSHKLPPKE 556
C H+ R C KG+ C F H+ L K P C + +G+C+ G+ CL+ H P K+
Sbjct: 54 CKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQ 107
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 30/85 (35%), Positives = 41/85 (48%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHF--ARNSCMKGDNCPFDH-DLSKYP-- 530
C H+L+G C++G++C F H+ L K CHF R C G+ C + H D SK
Sbjct: 54 CKHWLRGLCKKGEQCDFLHE-YNLKKMPP--CHFYAERGWCSNGEECLYLHLDPSKQVGV 110
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPK 555
C + GFC G C H P+
Sbjct: 111 CA-WYNMGFCPLGPICRGKHVRKPR 134
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 143 (55.4 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 37/107 (34%), Positives = 54/107 (50%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
KTV C H+L+G C++GD+C+F H+ +TK + C+F G C H +
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE--CYFYSKF---GPLCRHRHT-RRVI 115
Query: 531 CENFVAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPSP 573
C N++ GFC G +C F H +LP + PP P P K +P
Sbjct: 116 CVNYLV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKRTP 161
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK 537
KGD C F H D++K P F +K
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSK 101
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 143 (55.4 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 37/107 (34%), Positives = 54/107 (50%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
KTV C H+L+G C++GD+C+F H+ +TK + C+F G C H +
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE--CYFYSKF---GPLCRHRHT-RRVI 115
Query: 531 CENFVAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPSP 573
C N++ GFC G +C F H +LP + PP P P K +P
Sbjct: 116 CVNYLV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKRAP 161
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK 537
KGD C F H D++K P F +K
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSK 101
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 141 (54.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 37/108 (34%), Positives = 53/108 (49%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
KTV C H+L+G C++GD+C+F H+ +TK + C+F G C H +
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE--CYFYSKF---GPLCRHRHT-RRVI 115
Query: 531 CENFVAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPSPP 574
C N++ GFC G +C F H +LP + PP P P K P
Sbjct: 116 CVNYLV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPATKQRAP 162
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK 537
KGD C F H D++K P F +K
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSK 101
>UNIPROTKB|Q8IXZ2 [details] [associations]
symbol:ZC3H3 "Zinc finger CCCH domain-containing protein 3"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010793 "regulation of mRNA export from nucleus" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006378 GO:GO:0003676 eggNOG:COG5084 GO:GO:0016973
EMBL:AC067930 EMBL:AC105118 GO:GO:0010793 EMBL:BC034435
EMBL:BC038670 EMBL:D63484 IPI:IPI00384232 IPI:IPI00410013
RefSeq:NP_055932.2 UniGene:Hs.521915 ProteinModelPortal:Q8IXZ2
SMR:Q8IXZ2 IntAct:Q8IXZ2 STRING:Q8IXZ2 PhosphoSite:Q8IXZ2
DMDM:308153538 PaxDb:Q8IXZ2 PRIDE:Q8IXZ2 Ensembl:ENST00000262577
GeneID:23144 KEGG:hsa:23144 UCSC:uc003yyd.2 CTD:23144
GeneCards:GC08M144519 H-InvDB:HIX0022677 HGNC:HGNC:28972
HPA:HPA023658 neXtProt:NX_Q8IXZ2 PharmGKB:PA134933089
HOGENOM:HOG000133053 HOVERGEN:HBG055611 InParanoid:Q8IXZ2
OMA:TSLPGDK OrthoDB:EOG40ZQX1 PhylomeDB:Q8IXZ2 ChiTaRS:ZC3H3
GenomeRNAi:23144 NextBio:44434 Bgee:Q8IXZ2 CleanEx:HS_ZC3H3
Genevestigator:Q8IXZ2 GermOnline:ENSG00000014164 Uniprot:Q8IXZ2
Length = 948
Score = 155 (59.6 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 40/127 (31%), Positives = 62/127 (48%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNS 513
R L + ++ + + K +YC +Y + GRC G++C + HD P + C F R +
Sbjct: 654 RSLAI--IRQARQRREKRKEYCMYYNRFGRCNRGERCPYIHD--P--EKVAVCTRFVRGT 707
Query: 514 CMKGDN-CPFDHDLSK--YPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELK 570
C K D CPF H +SK P ++ KG C+ NC +SH ++ + C+ LK
Sbjct: 708 CKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNS-NCPYSHVYVSRKAE-----VCSDFLK 761
Query: 571 PSPPLYA 577
PL A
Sbjct: 762 GYCPLGA 768
>UNIPROTKB|E2RSL2 [details] [associations]
symbol:ZC3H4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:SPNGRPM
EMBL:AAEX03000841 EMBL:AAEX03000842 EMBL:AAEX03000843
EMBL:AAEX03000844 EMBL:AAEX03000845 EMBL:AAEX03000846
EMBL:AAEX03000847 Ensembl:ENSCAFT00000006714 Uniprot:E2RSL2
Length = 1282
Score = 176 (67.0 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++++GRC GD C FSHD + L K + C + C + +NCP+ H +PC+ +
Sbjct: 397 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 453
Query: 536 AKGFCNRGDNCLFSH 550
G C GD+C+FSH
Sbjct: 454 TTGNCINGDDCMFSH 468
Score = 42 (19.8 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 552 LPPKEQD--PPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNI 609
LP +QD PP P+ P L+ + P N + D ++ + F+ +
Sbjct: 963 LPIPKQDAVPPVPAALQSMPTLDPRLHRATATGPPNTRPRLGTSTDPGTSGSNLPDFELL 1022
Query: 610 EQSVAKSI-LKPPALAP 625
+ + K++ P+ AP
Sbjct: 1023 SR-ILKTVNATGPSAAP 1038
Score = 42 (19.8 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 739 NDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNF--LS----TGKALANNTISNNQ 792
++ E GN+ T I Q+++ P+ + ++ GL L TG LA+ +S +
Sbjct: 785 DEDEGGNSVTSILKTLRQQTSSRPQASVGDLSNSGLGDPRLQKGHPTGGRLADPRLSRDP 844
Query: 793 ARLRSSAGDVINRSLEESPNTPNMSQN 819
R + + + P+ P ++++
Sbjct: 845 RLTRHAEASSGSGPGDTGPSDPRLARS 871
Score = 41 (19.5 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 245 GIIGAHDHRAEDVEVEEGEISGHFEVDE 272
G +G H ED EE E S + E +E
Sbjct: 271 GSVGDHPEDEEDFYEEEMEESQYGESEE 298
Score = 39 (18.8 bits), Expect = 6.6e-07, Sum P(4) = 6.6e-07
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 251 DHRAEDVEVEEGEIS--GHFEVDEVS 274
D R ED E+EEGE+ G E + S
Sbjct: 52 DDR-EDGELEEGELEDDGAEETQDTS 76
Score = 37 (18.1 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 175 EAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSK 218
E EL+ D + D + S + H S E+ R K
Sbjct: 61 EGELEDDGAEETQDTSGGPERSRKEKGEKHHSDSDEEKSHRRLK 104
Score = 37 (18.1 bits), Expect = 6.6e-07, Sum P(4) = 6.6e-07
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 290 EDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASG 334
EDEE ++ +++ + +E+ G E + D S LN + G
Sbjct: 278 EDEEDFYEEEMEESQYGESEEPMGDEDY-DEYSKELNQYRRSKDG 321
>UNIPROTKB|F1MXR8 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0010793 "regulation of mRNA export from nucleus"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793
OMA:TSLPGDK EMBL:DAAA02037469 EMBL:DAAA02037470 EMBL:DAAA02037471
EMBL:DAAA02037472 IPI:IPI00716772 Ensembl:ENSBTAT00000028621
Uniprot:F1MXR8
Length = 944
Score = 152 (58.6 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 38/116 (32%), Positives = 57/116 (49%)
Query: 466 QNLKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDN-CPFD 523
Q + + +YC +Y + GRC G++C + HD P + C F R +C K D CPF
Sbjct: 672 QRRRRRKEEYCMYYNRFGRCNRGERCPYVHD--P--EKVAVCTRFVRGTCKKTDGTCPFS 727
Query: 524 HDLSK--YPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYA 577
H +SK P ++ KG C+ +C +SH ++ + CT LK PL A
Sbjct: 728 HHVSKEKMPVCSYFLKGICSNS-SCPYSHVYVSRKAE-----VCTDFLKGYCPLGA 777
Score = 127 (49.8 bits), Expect = 0.00040, P = 0.00040
Identities = 31/100 (31%), Positives = 46/100 (46%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++LKG C C +SH V +++ + C F + C G C H L C +F
Sbjct: 738 CSYFLKGICSNSS-CPYSH--VYVSRKAEVCTDFLKGYCPLGAKCKKKHTLL---CPDFS 791
Query: 536 AKGFCNRGDNCLFSHKLPPK-EQDPPTPSTCTPELKPSPP 574
+G C RG C H+ P + + TP+ PE +PP
Sbjct: 792 RRGVCPRGAQCQLLHRNPKRLGRRAATPTA--PEPGNTPP 829
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 40/110 (36%), Positives = 53/110 (48%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P K T C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFPGMDKSGTA-VCEFFLKAACGKGSMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 115 (45.5 bits), Expect = 0.00085, P = 0.00085
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNC 546
+ +GFC G C
Sbjct: 121 IKDCPWYDRGFCKHGPLC 138
>UNIPROTKB|C9IZP5 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224
EMBL:AC069335 HGNC:HGNC:7112 IPI:IPI00947058
ProteinModelPortal:C9IZP5 SMR:C9IZP5 STRING:C9IZP5
Ensembl:ENST00000473444 HOGENOM:HOG000213911 ArrayExpress:C9IZP5
Bgee:C9IZP5 Uniprot:C9IZP5
Length = 102
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 508 HFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQDPP-TP 562
+F C +GDNC + HDLS P C+ F +G+C GD C + H P K+++ T
Sbjct: 14 YFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLKQEEATATE 72
Query: 563 STCTPELKPSPPLYASNLLKPL 584
T L S L S+++ PL
Sbjct: 73 LTTKSSLAASSSL--SSIVGPL 92
Score = 110 (43.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 478 HYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
+++ G C+EGD C++SHD S C +F R C+ GD C ++H
Sbjct: 14 YFMHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCRYEH 59
>UNIPROTKB|F1NI93 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AADN02013930
IPI:IPI00584461 Ensembl:ENSGALT00000007996 Uniprot:F1NI93
Length = 417
Score = 125 (49.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +Y++G C+EG KC FSHD + +KS+ C ++ + C G C +DH
Sbjct: 8 CRYYVQGVCREGSKCLFSHD-LSSSKSSTVCKYYQKGQCAYGARCRYDH 55
Score = 65 (27.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 522 FDHDLSKYPCENFV-AKGFCNRGDNCLFSHKLPPKEQ-DPPTP 562
F + K PC+ F KG C G CL+ H P + +P P
Sbjct: 317 FKQGVGKKPCKYFEQGKGTCPFGGKCLYFHAYPDGTRAEPEKP 359
Score = 51 (23.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 534 FVAKGFCNRGDNCLFSH 550
+ A G C+ GD CL+ H
Sbjct: 172 YAAAGACHFGDRCLYLH 188
>UNIPROTKB|Q9PTI4 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5084 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
CTD:23608 GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965
OMA:YQRGCCA OrthoDB:EOG45DWPM EMBL:AADN02006362 EMBL:AADN02006363
EMBL:AF192787 IPI:IPI00595405 RefSeq:NP_990073.1 UniGene:Gga.1197
Ensembl:ENSGALT00000020962 GeneID:395500 KEGG:gga:395500
InParanoid:Q9PTI4 NextBio:20815579 Uniprot:Q9PTI4
Length = 464
Score = 122 (48.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD + +S C ++ R C GD+C ++H
Sbjct: 54 CRYFMHGVCKEGDNCRYSHD-LSTGQSAMVCRYYQRGCCAYGDHCRYEH 101
Score = 69 (29.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 526 LSKYPCENF-VAKGFCNRGDNCLFSHKLPPKEQDPP 560
+S PC F +G C G NC + H P Q+ P
Sbjct: 355 MSNKPCRYFDEGRGSCPFGGNCFYKHAYPDGRQEEP 390
Score = 58 (25.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 523 DHDLSKYPCENFVAKGFCNRGDNCLFSH 550
D ++ K C + A G C G+NC++ H
Sbjct: 196 DEEMKKQLCP-YAAVGECRYGENCVYIH 222
>UNIPROTKB|E1BV31 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AADN02023770 IPI:IPI00572429 RefSeq:XP_414800.1
UniGene:Gga.12217 Ensembl:ENSGALT00000007510 GeneID:416494
KEGG:gga:416494 NextBio:20819939 Uniprot:E1BV31
Length = 243
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
Score = 118 (46.6 bits), Expect = 0.00039, P = 0.00039
Identities = 36/117 (30%), Positives = 51/117 (43%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G C H + C N+
Sbjct: 96 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPLCRHRHT-RRVICVNY 151
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPSPPLYASNLLKPLNNN 587
+ GFC G C F H +LP + PP P + K +P + +++ NNN
Sbjct: 152 LV-GFCPEGPTCKFMHPRFELPMGTTEQPPLPQPAQTQQKRTPQVIG--VMQSQNNN 205
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 34/103 (33%), Positives = 45/103 (43%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G C H + C N+
Sbjct: 96 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPLCRHRHT-RRVICVNY 151
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPSP 573
+ GFC G +C F H +LP + PP P P K +P
Sbjct: 152 LV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKRTP 193
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 34/103 (33%), Positives = 45/103 (43%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G C H + C N+
Sbjct: 96 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPLCRHRHT-RRVICVNY 151
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPSP 573
+ GFC G +C F H +LP + PP P P K +P
Sbjct: 152 LV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKRAP 193
>UNIPROTKB|F1PNB5 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 OMA:TSLPGDK
EMBL:AAEX03008930 EMBL:AAEX03008931 Ensembl:ENSCAFT00000002010
Uniprot:F1PNB5
Length = 838
Score = 154 (59.3 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 42/127 (33%), Positives = 60/127 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNS 513
R L + R + Q + + +YC +Y + GRC G+ C + HD P C F R +
Sbjct: 531 RSLAIVR-QARQRRRKQRQEYCMYYNRFGRCNHGEHCPYIHD--P--DKVAVCTRFLRGT 585
Query: 514 CMKGDN-CPFDHDLSK--YPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELK 570
C K D CPF H +SK P ++ KG C+ NC +SH ++ + CT LK
Sbjct: 586 CKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNS-NCPYSHVYVSRKAE-----VCTDFLK 639
Query: 571 PSPPLYA 577
PL A
Sbjct: 640 GYCPLGA 646
Score = 45 (20.9 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 780 GKALANNTISNNQARLRSSAGDVINRSLEESP-NTPNMSQNSSANPWS 826
G A N S++ +SSA R SP ++P + +S +P S
Sbjct: 694 GSAPPRNKASSSHGPRKSSAAQRPTRQTPSSPPSSPRVLAAASGSPLS 741
Score = 40 (19.1 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 27/121 (22%), Positives = 47/121 (38%)
Query: 287 EKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNE 346
+K+ + +V K V+ +D P + +E + +++ SG V + +
Sbjct: 71 QKEPGKPRVVKSVSSMSDSPSEPRRTVSESAVAVKARLVSSGLPQRSGMAVGRKVASHSV 130
Query: 347 TQCKTKIFADGTATMAIDPDRYNSMPGVGRNKRKASRGEEGI-SSFSASLDDSTVQKEVV 405
C ++F D A PD+ S V R AS + SS AS + +K
Sbjct: 131 ASCVAQLFGDRRVN-AGHPDQPASCGLVAGPARPASGPRQARESSLLASCRTTKFRKNNY 189
Query: 406 K 406
K
Sbjct: 190 K 190
>UNIPROTKB|J9P398 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AAEX03004276 RefSeq:XP_850149.1 ProteinModelPortal:J9P398
Ensembl:ENSCAFT00000043832 GeneID:489859 KEGG:cfa:489859
Uniprot:J9P398
Length = 269
Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 41/125 (32%), Positives = 57/125 (45%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G C H + C N+
Sbjct: 96 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPLCRHRHT-RRVICVNY 151
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPS--PPLY-ASNLLKPLNNN 587
+ GFC G +C F H +LP + PP P P K S PPL +S+L++ + N
Sbjct: 152 LV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPATKQSNNPPLQRSSSLIQLTSQN 210
Query: 588 KVSHQ 592
+Q
Sbjct: 211 SSPNQ 215
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>UNIPROTKB|O95639 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0019048
"virus-host interaction" evidence=TAS] [GO:0019054 "modulation by
virus of host cellular process" evidence=TAS] [GO:0019058 "viral
infectious cycle" evidence=TAS] [GO:0046778 "modification by virus
of host mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0005739 Reactome:REACT_116125
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
EMBL:CH236956 EMBL:CH471091 GO:GO:0019058 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
HOVERGEN:HBG051108 CTD:10898 KO:K14404 OMA:PLDQVTC
OrthoDB:EOG4KH2VQ EMBL:U79569 EMBL:CR542161 EMBL:EF191081
EMBL:BC003101 EMBL:BC050738 IPI:IPI00009137 IPI:IPI00029707
IPI:IPI00375469 RefSeq:NP_001075028.1 RefSeq:NP_006684.1
UniGene:Hs.489287 PDB:2D9N PDB:2RHK PDBsum:2D9N PDBsum:2RHK
ProteinModelPortal:O95639 SMR:O95639 DIP:DIP-48675N IntAct:O95639
MINT:MINT-1429837 STRING:O95639 PhosphoSite:O95639 PaxDb:O95639
PRIDE:O95639 DNASU:10898 Ensembl:ENST00000292476
Ensembl:ENST00000436336 GeneID:10898 KEGG:hsa:10898 UCSC:uc003uqi.3
UCSC:uc003uqj.3 UCSC:uc003uqk.3 GeneCards:GC07P099036
HGNC:HGNC:2327 HPA:HPA049094 MIM:603052 neXtProt:NX_O95639
PharmGKB:PA26844 InParanoid:O95639 PhylomeDB:O95639
EvolutionaryTrace:O95639 GenomeRNAi:10898 NextBio:41385
ArrayExpress:O95639 Bgee:O95639 CleanEx:HS_CPSF4
Genevestigator:O95639 GermOnline:ENSG00000160917 GO:GO:0046778
Uniprot:O95639
Length = 269
Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 41/125 (32%), Positives = 57/125 (45%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G C H + C N+
Sbjct: 96 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPLCRHRHT-RRVICVNY 151
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPS--PPLY-ASNLLKPLNNN 587
+ GFC G +C F H +LP + PP P P K S PPL +S+L++ + N
Sbjct: 152 LV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTSQN 210
Query: 588 KVSHQ 592
+Q
Sbjct: 211 SSPNQ 215
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>UNIPROTKB|F1REX3 [details] [associations]
symbol:LOC100518830 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 KO:K14404 EMBL:FP102617
RefSeq:XP_003124350.1 Ensembl:ENSSSCT00000008355 GeneID:100518830
KEGG:ssc:100518830 OMA:MQDIVAS Uniprot:F1REX3
Length = 269
Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 40/125 (32%), Positives = 55/125 (44%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + C G C H + C N+
Sbjct: 96 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDARFCKHGPLCRHRHT-RRVICVNY 151
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPS--PPLY-ASNLLKPLNNN 587
+ GFC G +C F H +LP + PP P P K S PPL +S+L++ N
Sbjct: 152 LV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTTQN 210
Query: 588 KVSHQ 592
+Q
Sbjct: 211 SSPNQ 215
>UNIPROTKB|Q66KE3 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG5084 GO:GO:0042462 GO:GO:0005847 HOVERGEN:HBG051108
CTD:10898 KO:K14404 OrthoDB:EOG4KH2VQ EMBL:BC080440
RefSeq:NP_001007933.1 UniGene:Str.3196 ProteinModelPortal:Q66KE3
SMR:Q66KE3 STRING:Q66KE3 GeneID:493312 KEGG:xtr:493312
Xenbase:XB-GENE-948302 InParanoid:Q66KE3 Bgee:Q66KE3 Uniprot:Q66KE3
Length = 269
Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKSACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>UNIPROTKB|Q6DJP7 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0005847
HOVERGEN:HBG051108 CTD:10898 KO:K14404 EMBL:BC075128
RefSeq:NP_001086337.1 UniGene:Xl.25683 ProteinModelPortal:Q6DJP7
SMR:Q6DJP7 GeneID:444766 KEGG:xla:444766 Xenbase:XB-GENE-948308
Uniprot:Q6DJP7
Length = 269
Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKSACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 119 (46.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 11 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 67
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 68 IKDCPWYDRGFCKHGPLCRHRH 89
>ZFIN|ZDB-GENE-990415-180 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation specific
factor 4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042462 "eye photoreceptor cell development" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356
ZFIN:ZDB-GENE-990415-180 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0042462
HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898 KO:K14404
OrthoDB:EOG4KH2VQ EMBL:U70479 EMBL:BC045289 IPI:IPI00630205
RefSeq:NP_571084.1 UniGene:Dr.75095 SMR:Q98881 STRING:Q98881
GeneID:30203 KEGG:dre:30203 InParanoid:Q98881 NextBio:20806666
Uniprot:Q98881
Length = 271
Score = 137 (53.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 36/110 (32%), Positives = 53/110 (48%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C ++++ C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEYFMRAACMKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G +C H
Sbjct: 121 IKDCPWYDRGFCKHGPDCRHRH 142
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 40/132 (30%), Positives = 56/132 (42%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G +C H + C N+
Sbjct: 96 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPDCRHRHT-RRVICVNY 151
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPS---PPLYASNLLKPLNNN 587
+ GFC G +C F H +LP + PP P + K P +S L L N
Sbjct: 152 LV-GFCPEGKSCKFMHPRFELPMGATEQPPLPQQVQTQQKQQNMQPINRSSQSLIQLTNP 210
Query: 588 KVSHQNVDALSN 599
+S+ N + N
Sbjct: 211 NISNNNHQRIPN 222
>DICTYBASE|DDB_G0270148 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation
specificity factor 30 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 dictyBase:DDB_G0270148
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379
KO:K14404 RefSeq:XP_646578.1 ProteinModelPortal:Q55CA3 SMR:Q55CA3
STRING:Q55CA3 EnsemblProtists:DDB0233701 GeneID:8617548
KEGG:ddi:DDB_G0270148 InParanoid:Q55CA3 OMA:ECMYLHV
ProtClustDB:CLSZ2437480 Uniprot:Q55CA3
Length = 372
Score = 140 (54.3 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 39/117 (33%), Positives = 54/117 (46%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKA--CCHFARNSCMKGDNCPFDH--DLSKYP- 530
C +LKG C +G C + H TK+ +A C H+ R C KG+ C F H DL K P
Sbjct: 38 CRFFLKGSCTKGSDCPYKH-----TKAERAVVCKHWLRGLCKKGELCEFLHEYDLQKMPE 92
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNN 587
C F G CN + C++ H + P+E+ P K P ++ K L N
Sbjct: 93 CYFFSKHGECNNQE-CMYLH-VNPEEKVRECPWYSRGFCKHGPKCRHKHIKKLLCEN 147
>UNIPROTKB|F1LWJ4 [details] [associations]
symbol:F1LWJ4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00390000009627 IPI:IPI00776496
Ensembl:ENSRNOT00000029618 Uniprot:F1LWJ4
Length = 243
Score = 135 (52.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 36/110 (32%), Positives = 53/110 (48%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG ++L P ++ C ++K C +G C F H + + T C H+ R C
Sbjct: 22 QQLGAQQLSFP-SMDKSGAAVCEFFVKAACGKGGMCPFCHIS---GEKTVVCQHWLRGLC 77
Query: 515 MKGDNCPFDH--DLSKY-PCENFVAKGFCNRGDNCLFSHKLPP-KEQDPP 560
KGD C F H D++K C F +K + G +C F H P K +D P
Sbjct: 78 KKGDQCEFLHKYDITKMLECY-FYSKFWKCSGKDCSFVHMDPESKIKDCP 126
>UNIPROTKB|C9JYX8 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003682 GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224
EMBL:AC069335 HGNC:HGNC:7112 HOGENOM:HOG000213911 IPI:IPI00944929
ProteinModelPortal:C9JYX8 SMR:C9JYX8 STRING:C9JYX8
Ensembl:ENST00000494939 ArrayExpress:C9JYX8 Bgee:C9JYX8
Uniprot:C9JYX8
Length = 136
Score = 117 (46.2 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 514 CMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQDPP-TPSTCTPE 568
C +GDNC + HDLS P C+ F +G+C GD C + H P K+++ T T
Sbjct: 5 CKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLKQEEATATELTTKSS 63
Query: 569 LKPSPPLYASNLLKPL 584
L S L S+++ PL
Sbjct: 64 LAASSSL--SSIVGPL 77
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 480 LKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
+ G C+EGD C++SHD S C +F R C+ GD C ++H
Sbjct: 1 MHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCRYEH 44
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 134 (52.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 37/115 (32%), Positives = 59/115 (51%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDH--DLSKYP-C 531
C H+LKG C++G KC++ H+ L + + C F+R+ C GD+C + H + ++ P C
Sbjct: 92 CKHFLKGLCKKGMKCEYLHE-YNLRRMPE-CQSFSRSGYCPNGDDCLYQHVREQARLPPC 149
Query: 532 ENFVAKGFCNRGDNCLFSH---KLPPKEQDPPTPSTCTPELKPSPPLYASNLLKP 583
E++ +GFC G C H +L P P P + P ++ NL KP
Sbjct: 150 EHY-DQGFCPLGPLCAKRHVRRRLCPYYVAGFCPEG--PNCANAHPRWSENLPKP 201
Score = 127 (49.8 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 35/107 (32%), Positives = 47/107 (43%)
Query: 473 VKYCHHYLKGRCQEGDKCKFSHDTVP-LTKSTKA--------------CCHFARNSCMKG 517
V C Y +G C G C H T +T ST C HF + C KG
Sbjct: 44 VPVCKAYSEGHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKG 103
Query: 518 DNCPFDHD--LSKYP-CENFVAKGFCNRGDNCLFSH-----KLPPKE 556
C + H+ L + P C++F G+C GD+CL+ H +LPP E
Sbjct: 104 MKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
>CGD|CAL0005897 [details] [associations]
symbol:YTH1 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 CGD:CAL0005897
GO:GO:0005634 GO:GO:0042493 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 eggNOG:COG5084 KO:K14404
EMBL:AACQ01000145 EMBL:AACQ01000144 RefSeq:XP_712810.1
RefSeq:XP_712839.1 ProteinModelPortal:Q59T36 SMR:Q59T36
STRING:Q59T36 GeneID:3645540 GeneID:3645572 KEGG:cal:CaO19.14170
KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 131 (51.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDH--DLSKYP-C 531
C H+L+G C++GD C+F H+ L K + C +++N C + C + H SK P C
Sbjct: 71 CKHWLRGLCKKGDHCEFLHE-YNLRKMPE-CLFYSKNGYCTQTSECLYLHVDPQSKIPEC 128
Query: 532 ENFVAKGFCNRGDNCLFSH 550
N+ +GFC+ G NC H
Sbjct: 129 LNY-NQGFCSEGPNCKNRH 146
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 484 CQEGDKCKFSHDTVPLTKSTKACC-HFARNSCMKGDNCPFDHD--LSKYP-CENFVAKGF 539
C +G+ C H V S K C H+ R C KGD+C F H+ L K P C + G+
Sbjct: 50 CPQGNNCPNKH--VSAMYSNKIVCKHWLRGLCKKGDHCEFLHEYNLRKMPECLFYSKNGY 107
Query: 540 CNRGDNCLFSHKLPPKEQDP 559
C + CL+ H + P+ + P
Sbjct: 108 CTQTSECLYLH-VDPQSKIP 126
>UNIPROTKB|Q59T36 [details] [associations]
symbol:YTH1 "mRNA 3'-end-processing protein YTH1"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 CGD:CAL0005897 GO:GO:0005634 GO:GO:0042493
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 KO:K14404 EMBL:AACQ01000145 EMBL:AACQ01000144
RefSeq:XP_712810.1 RefSeq:XP_712839.1 ProteinModelPortal:Q59T36
SMR:Q59T36 STRING:Q59T36 GeneID:3645540 GeneID:3645572
KEGG:cal:CaO19.14170 KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 131 (51.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDH--DLSKYP-C 531
C H+L+G C++GD C+F H+ L K + C +++N C + C + H SK P C
Sbjct: 71 CKHWLRGLCKKGDHCEFLHE-YNLRKMPE-CLFYSKNGYCTQTSECLYLHVDPQSKIPEC 128
Query: 532 ENFVAKGFCNRGDNCLFSH 550
N+ +GFC+ G NC H
Sbjct: 129 LNY-NQGFCSEGPNCKNRH 146
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 484 CQEGDKCKFSHDTVPLTKSTKACC-HFARNSCMKGDNCPFDHD--LSKYP-CENFVAKGF 539
C +G+ C H V S K C H+ R C KGD+C F H+ L K P C + G+
Sbjct: 50 CPQGNNCPNKH--VSAMYSNKIVCKHWLRGLCKKGDHCEFLHEYNLRKMPECLFYSKNGY 107
Query: 540 CNRGDNCLFSHKLPPKEQDP 559
C + CL+ H + P+ + P
Sbjct: 108 CTQTSECLYLH-VDPQSKIP 126
>UNIPROTKB|E2RBM0 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:AAEX03004276
Ensembl:ENSCAFT00000023887 NextBio:20862973 Uniprot:E2RBM0
Length = 164
Score = 119 (46.9 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 62 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 118
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 119 IKDCPWYDRGFCKHGPLCRHRH 140
>SGD|S000006311 [details] [associations]
symbol:YTH1 "Essential RNA-binding component of cleavage and
polyadenylation factor" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IMP;IDA;TAS] [GO:0006378 "mRNA polyadenylation"
evidence=IDA;IMP;TAS] InterPro:IPR000571 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00356 SGD:S000006311 GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 EMBL:BK006949
eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379 EMBL:U32445
HOGENOM:HOG000212457 GeneTree:ENSGT00390000009627 KO:K14404
OMA:DPDRPVC OrthoDB:EOG4PG99D EMBL:AY558061 PIR:S59772
RefSeq:NP_015432.1 ProteinModelPortal:Q06102 SMR:Q06102
DIP:DIP-2028N IntAct:Q06102 MINT:MINT-375481 STRING:Q06102
PaxDb:Q06102 PeptideAtlas:Q06102 EnsemblFungi:YPR107C GeneID:856222
KEGG:sce:YPR107C CYGD:YPR107c NextBio:981453 Genevestigator:Q06102
GermOnline:YPR107C Uniprot:Q06102
Length = 208
Score = 130 (50.8 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDH--DLSKYP-C 531
C H+L+G C++ D+C++ H+ L K + C F++N C + +C + H SK P C
Sbjct: 67 CRHWLRGLCKKNDQCEYLHE-YNLRKMPE-CVFFSKNGYCTQSPDCQYLHIDPASKIPKC 124
Query: 532 ENFVAKGFCNRGDNCLFSH 550
EN+ GFC G +C H
Sbjct: 125 ENY-EMGFCPLGSSCPRRH 142
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 484 CQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHD--LSKYP-CENFVAKGFC 540
C G C H +P+ ++ C H+ R C K D C + H+ L K P C F G+C
Sbjct: 46 CPRGPLCPKKH-VLPIFQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYC 104
Query: 541 NRGDNCLFSHKLPPKEQDP 559
+ +C + H + P + P
Sbjct: 105 TQSPDCQYLH-IDPASKIP 122
>DICTYBASE|DDB_G0279181 [details] [associations]
symbol:DDB_G0279181 species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 dictyBase:DDB_G0279181 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5084 EMBL:AAFI02000029 RefSeq:XP_641831.1
ProteinModelPortal:Q54X64 EnsemblProtists:DDB0218155 GeneID:8621908
KEGG:ddi:DDB_G0279181 InParanoid:Q54X64 OMA:PIFNKLP Uniprot:Q54X64
Length = 611
Score = 140 (54.3 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 469 KPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DLS 527
+PK V+ C ++ G C + D CK H L CH N DNCP+ H +LS
Sbjct: 385 EPKRVRICPKFIAGNCDDPD-CKLQHS---LDLDLMPICHLFLNRMCTNDNCPYLHVNLS 440
Query: 528 KYP--CENFVAKGFCNRGDNCLFSHKLPPKEQ 557
K C +F++ G+C +G C H KE+
Sbjct: 441 KDTEVCPDFIS-GYCPKGSKCELKHTYTKKEK 471
>WB|WBGene00044329 [details] [associations]
symbol:cpsf-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0009792
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0000910 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0040027 HOGENOM:HOG000212457 GeneTree:ENSGT00390000009627
KO:K14404 OMA:PLDQVTC EMBL:Z68297 RefSeq:NP_001023126.1
ProteinModelPortal:Q7YTG9 SMR:Q7YTG9 IntAct:Q7YTG9
MINT:MINT-6669146 STRING:Q7YTG9 PaxDb:Q7YTG9
EnsemblMetazoa:F11A10.8 GeneID:178151 KEGG:cel:CELE_F11A10.8
UCSC:F11A10.8 CTD:178151 WormBase:F11A10.8 InParanoid:Q7YTG9
NextBio:899930 Uniprot:Q7YTG9
Length = 302
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH---DLSKYPCE 532
C H+L+G C++GD+C+F H+ LTK + C F++ S CPF H + C
Sbjct: 82 CKHWLRGLCKKGDQCEFLHE-YDLTKMPE-CFFFSKYSACSNRECPFRHIDPETKMKDCP 139
Query: 533 NFVAKGFCNRGDNCLFSHK 551
+ +GFC G C H+
Sbjct: 140 -WYDRGFCRHGPYCKHRHR 157
>FB|FBgn0036203 [details] [associations]
symbol:Muc68D "Mucin 68D" species:7227 "Drosophila
melanogaster" [GO:0016490 "structural constituent of peritrophic
membrane" evidence=ISS] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0008061 "chitin binding" evidence=IEA]
[GO:0006030 "chitin metabolic process" evidence=IEA] [GO:0031012
"extracellular matrix" evidence=ISM] [GO:0005201 "extracellular
matrix structural constituent" evidence=ISM] InterPro:IPR002557
Pfam:PF01607 PROSITE:PS50940 SMART:SM00494 GO:GO:0005576
EMBL:AE014296 eggNOG:NOG12793 GO:GO:0031012 GO:GO:0008061
GO:GO:0005201 CAZy:CBM14 Gene3D:2.170.140.10 SUPFAM:SSF57625
GO:GO:0006030 GeneTree:ENSGT00700000104174 EMBL:AY075323
RefSeq:NP_648504.2 UniGene:Dm.20068 SMR:Q9VTN2 MINT:MINT-900668
STRING:Q9VTN2 EnsemblMetazoa:FBtr0076119 GeneID:39326
KEGG:dme:Dmel_CG6004 UCSC:CG6004-RB CTD:39326 FlyBase:FBgn0036203
InParanoid:Q9VTN2 OMA:STESSQD OrthoDB:EOG4WSTSF GenomeRNAi:39326
NextBio:813085 Uniprot:Q9VTN2
Length = 1514
Score = 117 (46.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 62/302 (20%), Positives = 120/302 (39%)
Query: 577 ASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSILKPPAL-APKGISYLFLGK 635
+S+ PL+ + N + + + S+ + S + P+ A + S
Sbjct: 745 SSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQD 804
Query: 636 SSFLEASNLGQGISSPKKSDSSKFANQTAQIAS--DSVQSRDETPRRIPVATKGVNFLSF 693
S+ E+S+ +G P ++SS AN+++ S DS + P++T+ ++
Sbjct: 805 STTQESSSSSEG---PLSTESSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATY 861
Query: 694 GNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSN 753
+ S E S + E T S G +E+SS+ S ++ TTQ S+
Sbjct: 862 ESSSTESSQDSTTQESSSSTEGPLSTESSTE-GSNESSSTESSQDS-------TTQESSS 913
Query: 754 SVQKSNDMPKKTQPAITPRGLNFLSTGK-ALANNTISNNQARLRSSAGDVINRSLE-ESP 811
S + P T+P+ + + + + + S+ + L + + N S ES
Sbjct: 914 STES----PLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLSTESSTEANESSSTESS 969
Query: 812 NTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSNSAQRALEFATKIEPKVKTNQ 871
++SS+ L S T G + S + ST+ + + E EP + N+
Sbjct: 970 QDSTTQESSSSTEGPLSTESSTEGSNESSSTESSQDSTTQESSSSTESPLSTEPSTEANE 1029
Query: 872 ST 873
S+
Sbjct: 1030 SS 1031
Score = 78 (32.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 49/261 (18%), Positives = 97/261 (37%)
Query: 169 NVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNSLXXXX 228
+ ES ++ Q + S+ + P S +SS + +S +++ ++DS + S T S
Sbjct: 498 STESSQDSTTQ--ESSSSSEGPLSTESSTEATNESSSTESSQDSTTQESSSSTESPLSTE 555
Query: 229 XXXXXXXXXXXLVHTNGIIGAHDHRAED-VEVEEG-EISGHFEVDEVSIDMIIDNAVVSN 286
+ ED + E E + E S D + S
Sbjct: 556 PSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATNESSSTESSQDSTTQESSSST 615
Query: 287 EKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLN---AVDHNASGGTVELQETV 343
E E ++ + + ++ T+K S ST L+ + + N S T Q++
Sbjct: 616 EGPLSTESSTEGSNESSSTESSQD-STTQKSSSSTESPLSTEPSTEANESSSTESSQDST 674
Query: 344 RNETQCKTK-IFADGTATMAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQK 402
E+ T+ + +T A + S + +S E +S+ S++ + +
Sbjct: 675 TQESSSSTEGPLSTEPSTEANESSSTESSQD-STTQESSSSSEGPLSTESSTEANESSST 733
Query: 403 EVVKQRVTQEQGITTKDKLDS 423
E + TQE +T+ L +
Sbjct: 734 ESSQDSTTQESSSSTESPLST 754
Score = 69 (29.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 50/267 (18%), Positives = 102/267 (38%)
Query: 166 QIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNS-L 224
Q + ES ++ Q + S+ + P S +SS + +S +++ ++DS + S T L
Sbjct: 393 QSSSTESSQDSTTQ--ESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESSSSTEGPL 450
Query: 225 XXXXXXXXXXXXXXXLVHTNGIIGAHDHRAED-VEVEEG-EISGHFEVDEVSIDMIIDNA 282
+ E + E E + E S D +
Sbjct: 451 STESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDSTTQES 510
Query: 283 VVSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLN---AVDHNASGGTVEL 339
S+E E S + T+++ + + T++ S ST L+ + + N S T
Sbjct: 511 SSSSEGPLSTES-STEATNESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTESS 569
Query: 340 QETVRNETQCKTKI-FADGTATMAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLDDS 398
Q++ E+ T+ + ++T A + + ++ +++S EG S +S + S
Sbjct: 570 QDSTTQESSSSTEDPLSTESSTEATN-ESSSTESSQDSTTQESSSSTEGPLSTESSTEGS 628
Query: 399 TVQK--EVVKQRVTQEQGITTKDKLDS 423
E + TQ+ +T+ L +
Sbjct: 629 NESSSTESSQDSTTQKSSSSTESPLST 655
>ZFIN|ZDB-GENE-020213-1 [details] [associations]
symbol:mkrn1 "makorin, ring finger protein, 1"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184 SMART:SM00356
UniPathway:UPA00143 Prosite:PS00518 ZFIN:ZDB-GENE-020213-1
GO:GO:0046872 GO:GO:0016874 GO:GO:0008270 GO:GO:0003676
GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 HSSP:P47974 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 EMBL:CR792454 EMBL:CT826375
EMBL:BC095243 EMBL:AF277173 IPI:IPI00639757 RefSeq:NP_694510.1
UniGene:Dr.78561 ProteinModelPortal:Q4VBT5 STRING:Q4VBT5
Ensembl:ENSDART00000061070 GeneID:170782 KEGG:dre:170782 CTD:23608
GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965 InParanoid:Q4VBT5
OMA:YQRGCCA OrthoDB:EOG45DWPM NextBio:20797100 Bgee:Q4VBT5
Uniprot:Q4VBT5
Length = 439
Score = 122 (48.0 bits), Expect = 0.00048, P = 0.00048
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 506 CCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQDPPT 561
C +F C +G+NC + HDLS C+ F KG C GD C + H P K+ + P+
Sbjct: 24 CRYFMHGLCKEGENCRYSHDLSSCKQTMICK-FFQKGCCAFGDRCRYEHTKPSKQDEVPS 82
Query: 562 PSTCTPELKPSPPLYASNL 580
KPS PL A+ L
Sbjct: 83 S-------KPSMPLTAAPL 94
Score = 118 (46.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EG+ C++SHD + K T C F + C GD C ++H
Sbjct: 24 CRYFMHGLCKEGENCRYSHD-LSSCKQTMICKFFQKGCCAFGDRCRYEH 71
Score = 64 (27.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 530 PCENF-VAKGFCNRGDNCLFSHKLPPKEQDPPTP 562
PC F +G C G NC + H P + P P
Sbjct: 324 PCRYFDEGRGTCPFGANCFYKHAFPDGRLEEPQP 357
>UNIPROTKB|E1BQC4 [details] [associations]
symbol:E1BQC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000012005 OMA:MTPPQQP
EMBL:AADN02023596 IPI:IPI00583683 Ensembl:ENSGALT00000010414
Uniprot:E1BQC4
Length = 731
Score = 113 (44.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 76/311 (24%), Positives = 121/311 (38%)
Query: 540 CNRGDNCLFSHKLPPKEQDPPT-PSTCTPELK-----PSPPLYA----SNLLKPLNNNKV 589
C GD+C + H ++ P ST +++ P P A N + N
Sbjct: 265 CESGDSCQYCHSRTEQQFHPEIYKSTKCNDMRQTGYCPRGPFCAFAHGENSIGITNEWSS 324
Query: 590 SHQNVDAL-SNHGKVSSFKNIEQSVAKSILK-PPALAPKGISYLFLGK---SSFLE--AS 642
S ++L SN G+ + K S K P +S + SS AS
Sbjct: 325 SVNATNSLTSNSGQSGNAKQRSFSAENQQKKNEPDTKQNHLSVFSVVNPLASSITSSLAS 384
Query: 643 NLGQGISSPKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSS 702
++G SSP + S + QT S + + GVN S NR LED
Sbjct: 385 SVGSDSSSP--TTVSIISTQTLPFYSAGNTVESVIGSALDIHFNGVNVASI-NRELEDQE 441
Query: 703 GKKLANLFLNR---ENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQKSN 759
G L L + E+ A ++ + + +S SS + + + N+ +Q S S S
Sbjct: 442 GSDLGLASLGKRLLESSAPVNIPGSL-VRSSSLHSSSSLSTSPL-NSLSQSLSQSFVSST 499
Query: 760 DMPKKTQPAITPRGLNFLSTGKALANNTISNNQARLRSSAGDVINRSLEESPN------- 812
+P + QP N L T A ++N++ N + S D ++ + SP+
Sbjct: 500 MVPHQQQPQPLKSEQNILGTS-ASSHNSLGLNG--VTGSMWDFVSGNFSPSPSPVLSSGT 556
Query: 813 TPNMSQNSSAN 823
P++S NSS N
Sbjct: 557 APSVSSNSSGN 567
Score = 75 (31.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 27/83 (32%), Positives = 34/83 (40%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHY--LKGRCQEGDKCKFSHDTVPLTK--------STK 504
R+ +RR N P YC Y G C +GD C + H T T+ T
Sbjct: 63 RRRPIRRRDGTFNYSPDV--YCTKYDETTGICPDGDDCPYLHRTTGDTERKYHLRYYKTG 120
Query: 505 ACCHF--ARNSCMK-GDNCPFDH 524
C H AR C+K G +C F H
Sbjct: 121 TCIHETDARGHCVKNGIHCAFAH 143
>RGD|1307276 [details] [associations]
symbol:Zc3h3 "zinc finger CCCH type containing 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010793
"regulation of mRNA export from nucleus" evidence=IEA;ISO]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA;ISO]
[GO:0031124 "mRNA 3'-end processing" evidence=ISO] [GO:0032927
"positive regulation of activin receptor signaling pathway"
evidence=ISO] [GO:0046332 "SMAD binding" evidence=ISO] [GO:0070412
"R-SMAD binding" evidence=ISO] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 RGD:1307276 GO:GO:0005634
GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793 CTD:23144
OMA:TSLPGDK OrthoDB:EOG40ZQX1 IPI:IPI00361119 RefSeq:NP_001128337.1
UniGene:Rn.198237 Ensembl:ENSRNOT00000010120 GeneID:300032
KEGG:rno:300032 UCSC:RGD:1307276 NextBio:646159 Uniprot:D3ZKY5
Length = 952
Score = 152 (58.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 35/100 (35%), Positives = 52/100 (52%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNS 513
R L + ++ + K K +YC +Y + GRC G+ C + HD P + C F R +
Sbjct: 650 RSLAI--IRQAKQKKEKKREYCMYYNRFGRCNRGECCPYIHD--P--EKVAVCTRFVRGT 703
Query: 514 CMKGD-NCPFDHDLSK--YPCENFVAKGFCNRGDNCLFSH 550
C K D +CPF H +SK P ++ KG C+ NC +SH
Sbjct: 704 CKKTDGSCPFSHHVSKEKMPVCSYFLKGICSNS-NCPYSH 742
Score = 124 (48.7 bits), Expect = 0.00084, P = 0.00084
Identities = 38/130 (29%), Positives = 56/130 (43%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++LKG C + C +SH V +++ + C F + C G C H L C +F
Sbjct: 725 CSYFLKGICSNSN-CPYSH--VYVSRKAEVCGDFLKGYCPLGAKCKKKHTLL---CPDFA 778
Query: 536 AKGFCNRGDNCLFSHKLPPKE-----QDP-PTPSTCTPELKPSPPLYASNLLKPLNNNKV 589
+G C RG C H+ + P P PS TP K S +A L KP +
Sbjct: 779 RRGVCPRGTQCQLLHRNQKRHGRRTAAPPIPGPSDGTPRSKASAG-HA--LRKPTTTPRP 835
Query: 590 SHQNVDALSN 599
+ Q L++
Sbjct: 836 ARQMSSGLAS 845
Score = 37 (18.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 766 QPAITPRGLNFLSTGKALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPW 825
+P TPR +S+G A ++ R A S + ++P+ S ++ ++
Sbjct: 828 KPTTTPRPARQMSSGLASRTEAPASPPPSPRVLASTSTLSSKATAASSPSSSPSTGSSTP 887
Query: 826 SL 827
SL
Sbjct: 888 SL 889
>DICTYBASE|DDB_G0267686 [details] [associations]
symbol:DDB_G0267686 "protein kinase, TKL group"
species:44689 "Dictyostelium discoideum" [GO:0038032 "termination
of G-protein coupled receptor signaling pathway" evidence=IEA]
[GO:0016772 "transferase activity, transferring
phosphorus-containing groups" evidence=IEA] [GO:0006468 "protein
phosphorylation" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004674 "protein serine/threonine kinase
activity" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000342 InterPro:IPR000719 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR016137 InterPro:IPR017441
Pfam:PF00069 PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50011
PROSITE:PS50132 dictyBase:DDB_G0267686 GO:GO:0005524 eggNOG:COG0515
SUPFAM:SSF56112 GO:GO:0004674 EMBL:AAFI02000003 HSSP:P36897
GO:GO:0038032 SUPFAM:SSF48097 ProtClustDB:CLSZ2846746
RefSeq:XP_647220.1 ProteinModelPortal:Q55GG4 PRIDE:Q55GG4
EnsemblProtists:DDB0229847 GeneID:8616024 KEGG:ddi:DDB_G0267686
OMA:ICMIMEY Uniprot:Q55GG4
Length = 2230
Score = 92 (37.4 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 36/148 (24%), Positives = 69/148 (46%)
Query: 691 LSFGNRSLEDSS-GKKLANLFLNRENGAKTSLS-NNFGLHETSSSSSCGENDAEVGNATT 748
LS+ N S +S+ G L N + S + NN G+ TSS+++ +A + +
Sbjct: 1605 LSYNNNSNSNSNAGVGSIPLSFNEIVNSNNSPNINNNGIINTSSNNNINNTNASINGSAN 1664
Query: 749 QIFSNSVQKSND---MPKKTQ----------PAITPRGLNFLSTGKALANNTISNNQARL 795
Q+F+N + S + +P Q P +P+ ++F + + N + NN+A L
Sbjct: 1665 QLFNNPMTFSGNEIVLPPIVQSSGGSLFTDSPLSSPKRIHFHN---GIGNGDLLNNRAVL 1721
Query: 796 RSSAGDVINRSLEESPNTPNMSQNSSAN 823
S+ + N ++ + N N + N++ N
Sbjct: 1722 HSTVSN--NNNINSNNNNNNNNNNNNNN 1747
Score = 76 (31.8 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 35/157 (22%), Positives = 66/157 (42%)
Query: 284 VSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDST-SVCLNAVDHNAS--GGTVELQ 340
V ++KE E + K+ DK D +++ +K S +T SV + + N T
Sbjct: 318 VKEKEKEKENENEKNHNDKNDDDDDDEDNEKDKISKTTVSVSIKVSNENTPIINATDSSS 377
Query: 341 ETVR---NETQCKT--KIFADGTATMA-----IDPDRYNSMPGVGRNKRKASRGEEGISS 390
++ N + T ++ + G I+P + S +G N+ K+S G G +S
Sbjct: 378 NSINSSSNNSIATTPGRLSSSGLINHKKYDEFIEPTFFLSTASIGLNRLKSSNGASGSNS 437
Query: 391 FSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGACN 427
+ S T + Q+ +Q + K+ ++ CN
Sbjct: 438 GNVSPSGPTPILSTLFQKNNSKQDLL-KNSSENSFCN 473
Score = 74 (31.1 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 585 NNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLE---A 641
NNN ++ N + +N+ ++ F I+ S + S P+ + +++ G S + +
Sbjct: 537 NNNNNNNNNNNNNNNNNNINGFSTIKSSSSSSPTNSPSSSLNIMNFFNTGSISSIVGSGS 596
Query: 642 SNLGQGISSPKKSDSSKFANQTAQIASDSVQ 672
S+LG+G SS K DS N + A S Q
Sbjct: 597 SSLGKG-SSKKIKDSYSNNNNNSSTADLSEQ 626
Score = 51 (23.0 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 14/84 (16%), Positives = 37/84 (44%)
Query: 135 DELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFD 194
++L++I +I + E + +D +E+ + Q+ N E + + + +++ + N V +
Sbjct: 248 EKLQNIDPEIIIKLETEIKISSDEKENKEGGQVENKEEKEKLDQKLENENENEKVKEKEK 307
Query: 195 SSVDRNMDSHASKPAEDSEERNSK 218
+ ++ E N K
Sbjct: 308 EDEKEEQQVKVKEKEKEKENENEK 331
>UNIPROTKB|I3LCK9 [details] [associations]
symbol:LOC100738395 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 OMA:PLDQVTC EMBL:FP103031
Ensembl:ENSSSCT00000031676 Uniprot:I3LCK9
Length = 243
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 41/125 (32%), Positives = 56/125 (44%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G C H + C N+
Sbjct: 70 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPLCRHRHT-RRVICVNY 125
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPS--PPLY-ASNLLKPLNNN 587
+ GFC G +C F H +LP + PP P P K S PPL +S+L++ N
Sbjct: 126 LV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTTQN 184
Query: 588 KVSHQ 592
+Q
Sbjct: 185 SSPNQ 189
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/103 (34%), Positives = 48/103 (46%)
Query: 462 LKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCP 521
L LP + C +LK C +G C F H + + T C H+ R C KGD C
Sbjct: 1 LILPGMAEKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLCKKGDQCE 57
Query: 522 FDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 58 FLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 99
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 38 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 94
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 95 IKDCPWYDRGFCKHGPLCRHRH 116
>MGI|MGI:1859353 [details] [associations]
symbol:Mkrn1 "makorin, ring finger protein, 1" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1859353 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003682 GO:GO:0003676 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965 OrthoDB:EOG45DWPM
EMBL:AF192785 IPI:IPI00459256 IPI:IPI00850315 UniGene:Mm.270484
ProteinModelPortal:Q9QXP6 SMR:Q9QXP6 STRING:Q9QXP6
PhosphoSite:Q9QXP6 PaxDb:Q9QXP6 PRIDE:Q9QXP6
Ensembl:ENSMUST00000114822 InParanoid:Q9QXP6 ChiTaRS:MKRN1
Bgee:Q9QXP6 CleanEx:MM_MKRN1 Genevestigator:Q9QXP6
GermOnline:ENSMUSG00000029922 Uniprot:Q9QXP6
Length = 481
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 500 TKSTKACCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPK 555
TK C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K
Sbjct: 56 TKQV-TCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYF-QRGYCVYGDRCRYEHSKPLK 113
Query: 556 EQD-PPTPSTCTPELKPSPPLYAS-NLLKPLNNNKVSHQN 593
+++ T + P L S L + L +N+ + +N
Sbjct: 114 QEEVTATDLSAKPSLAASSSLSSGVGSLAEMNSGEAESRN 153
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD C +F R C+ GD C ++H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYGV-VCKYFQRGYCVYGDRCRYEH 108
Score = 57 (25.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 526 LSKYPCENF-VAKGFCNRGDNCLFSHKLPPKEQDPP 560
+S C F +G C G NC + H P ++ P
Sbjct: 365 MSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP 400
>FB|FBgn0015621 [details] [associations]
symbol:Clp "Clipper" species:7227 "Drosophila melanogaster"
[GO:0004521 "endoribonuclease activity" evidence=IDA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0022008
GO:GO:0046872 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GO:GO:0004521 Gene3D:4.10.60.10 GO:GO:0005847 GO:GO:0006379
EMBL:U26549 ProteinModelPortal:Q24081 SMR:Q24081 STRING:Q24081
PRIDE:Q24081 FlyBase:FBgn0015621 InParanoid:Q24081
OrthoDB:EOG4XKSPS ArrayExpress:Q24081 Bgee:Q24081 Uniprot:Q24081
Length = 296
Score = 130 (50.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFAR-NSCMKGDNCPFDH-D-LSKYPCE 532
C H+L+G C++GD+C+F H+ +TK + C ++R N+C + CPF H D SK
Sbjct: 70 CKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSRFNACHNKE-CPFLHIDPQSKVKDC 126
Query: 533 NFVAKGFCNRGDNCLFSH 550
+ +GFC G +C H
Sbjct: 127 PWYKRGFCRHGPHCRHQH 144
>POMBASE|SPBC215.13 [details] [associations]
symbol:SPBC215.13 "sequence orphan" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009986 "cell surface"
evidence=NAS] [GO:0031225 "anchored to membrane" evidence=IEA]
PomBase:SPBC215.13 GO:GO:0005783 GO:GO:0005886 GO:GO:0009986
GO:GO:0031225 EMBL:CU329671 PIR:T39903 RefSeq:NP_596690.1
ProteinModelPortal:O94317 EnsemblFungi:SPBC215.13.1 GeneID:2540669
KEGG:spo:SPBC215.13 eggNOG:opiNOG43420 OMA:NPTDVTS NextBio:20801793
Uniprot:O94317
Length = 534
Score = 134 (52.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 75/321 (23%), Positives = 137/321 (42%)
Query: 566 TPELKPSPPLYASNLLKPLNNN---KVSHQNVDALSNHGKVSSFKNIEQS--VAKSILKP 620
TP P +++ + N+ VS + A S +SF + S S
Sbjct: 77 TPTSSSEPSIFSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESS 136
Query: 621 PALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASD--SVQSRDETP 678
L P +S L S+ +E S +SS SS F++ ++ +S SV S +
Sbjct: 137 SLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSST 196
Query: 679 --RRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSL-SNNFGLHETSSS-- 733
P +T ++LS + SS ++ L + + +S+ S + TSSS
Sbjct: 197 FSSAAPTSTSS-SYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLS 255
Query: 734 SSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTISNNQA 793
SS + A ++++ I S+S S+ P T I+ + S+ ++TIS++
Sbjct: 256 SSSSSSTASSSSSSSSIISSS-SSSSSSPTSTSSTISSSSSS--SSSPTSTSSTISSS-- 310
Query: 794 RLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSNSA 853
SS+ + +L S +MS +SS + S SS T+ S + + ST++S+
Sbjct: 311 ---SSSSSSFSSTLSSS----SMSSSSSFSS-SPTSSSSTISSSSSSPSSSSFSSTTSSS 362
Query: 854 QRALEFATKIEPKVKTNQSTV 874
+ + F++ + T+ ST+
Sbjct: 363 KSSSSFSSTVSSSSSTSSSTL 383
>UNIPROTKB|C9J031 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003682 GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 EMBL:AC069335 HGNC:HGNC:7112 IPI:IPI00946491
ProteinModelPortal:C9J031 SMR:C9J031 STRING:C9J031
Ensembl:ENST00000467513 ArrayExpress:C9J031 Bgee:C9J031
Uniprot:C9J031
Length = 165
Score = 117 (46.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 514 CMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQDPP-TPSTCTPE 568
C +GDNC + HDLS P C+ F +G+C GD C + H P K+++ T T
Sbjct: 5 CKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLKQEEATATELTTKSS 63
Query: 569 LKPSPPLYASNLLKPL 584
L S L S+++ PL
Sbjct: 64 LAASSSL--SSIVGPL 77
Score = 105 (42.0 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 480 LKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
+ G C+EGD C++SHD S C +F R C+ GD C ++H
Sbjct: 1 MHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCRYEH 44
Score = 40 (19.1 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 525 DLSKYPCENFVAKGFCNRGDNCL 547
+ K C + A G C G+NC+
Sbjct: 144 ETKKQLCP-YAAVGECRYGENCV 165
>UNIPROTKB|Q13434 [details] [associations]
symbol:MKRN4P "Putative E3 ubiquitin-protein ligase
makorin-4" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0008270 GO:GO:0003676
GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOVERGEN:HBG066965 HPA:HPA000567 EMBL:U41315 IPI:IPI00006148
ProteinModelPortal:Q13434 SMR:Q13434 DMDM:17368441 PRIDE:Q13434
GeneCards:GC0XP040694 HGNC:HGNC:7115 neXtProt:NX_Q13434
PharmGKB:PA30834 Genevestigator:Q13434 GermOnline:ENSG00000197639
Uniprot:Q13434
Length = 485
Score = 132 (51.5 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 39/121 (32%), Positives = 53/121 (43%)
Query: 482 GRCQEGDKCKFSHDTV--PLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCE---NFVA 536
G C D C S D+ TK C +F C +GDNC + HDLS C +
Sbjct: 71 GACGGSDACDGSGDSSGDSWTKQV-TCRYFKYGICKEGDNCRYSHDLSDRLCGVVCKYFQ 129
Query: 537 KGFCNRGDNCLFSHKLPPKEQDPP-TPSTCTPELKPSPPLYASNLLKPL---NNNKVSHQ 592
+G C GD C H P K+++ T T L S L S+++ PL N N+ +
Sbjct: 130 RGCCVYGDRCRCEHSKPLKQEEATATELTTKSSLAASSSL--SSIVGPLVEMNTNEAESR 187
Query: 593 N 593
N
Sbjct: 188 N 188
>CGD|CAL0004807 [details] [associations]
symbol:orf19.7385 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 CGD:CAL0004807 GO:GO:0008270 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG5084 InterPro:IPR026290
PANTHER:PTHR11224 RefSeq:XP_716626.1 ProteinModelPortal:Q5A4E9
GeneID:3641745 KEGG:cal:CaO19.7385 HOGENOM:HOG000093942
Uniprot:Q5A4E9
Length = 501
Score = 132 (51.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 67/255 (26%), Positives = 102/255 (40%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACC-HFARNSCMKGDNCPFDHDLSKYPCENF 534
C + +G CQ G+ C FSH+ + K C +F + +C G C H L N
Sbjct: 116 CKFFKQGVCQAGNSCPFSHNLEGALGADKLPCKYFQKGNCKFGLKCALAHFLPDGTRVN- 174
Query: 535 VAKGFCN-RGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNN-KVSHQ 592
+K F G+ +H+ T S+ P + SPP Y + + NN + S
Sbjct: 175 -SKSFLQLNGNGKPNNHR---GSFGSYTASSY-P-IDYSPPEYEKSFVDANNNGIESSPS 228
Query: 593 NVDALSNHGKVSSFKNIEQSVAKSILKP--PALAPKGISYLFLGKSSFLEASNLGQGISS 650
N + + K +SF NI + S+ + ++ + L +S SN Q I
Sbjct: 229 NTVFATQNSKTTSFINIGNGTSSSLQQQYQQPISLSSVPQESLDRSRSFNRSNSLQNIPQ 288
Query: 651 PKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKL-ANL 709
P + SS ++ Q +I+ S P V+ SF N S+G +N
Sbjct: 289 PDNTPSSPYSQQP-KISHQRSLSMQHHPSIFLVSN------SFNNGLSNASNGFSFRSNP 341
Query: 710 FLNRENGAKTSLSNN 724
L R N SLSNN
Sbjct: 342 PLGRSNSI--SLSNN 354
>UNIPROTKB|Q5A4E9 [details] [associations]
symbol:LEE1 "Putative uncharacterized protein LEE1"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 CGD:CAL0004807 GO:GO:0008270 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG5084 InterPro:IPR026290
PANTHER:PTHR11224 RefSeq:XP_716626.1 ProteinModelPortal:Q5A4E9
GeneID:3641745 KEGG:cal:CaO19.7385 HOGENOM:HOG000093942
Uniprot:Q5A4E9
Length = 501
Score = 132 (51.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 67/255 (26%), Positives = 102/255 (40%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACC-HFARNSCMKGDNCPFDHDLSKYPCENF 534
C + +G CQ G+ C FSH+ + K C +F + +C G C H L N
Sbjct: 116 CKFFKQGVCQAGNSCPFSHNLEGALGADKLPCKYFQKGNCKFGLKCALAHFLPDGTRVN- 174
Query: 535 VAKGFCN-RGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNN-KVSHQ 592
+K F G+ +H+ T S+ P + SPP Y + + NN + S
Sbjct: 175 -SKSFLQLNGNGKPNNHR---GSFGSYTASSY-P-IDYSPPEYEKSFVDANNNGIESSPS 228
Query: 593 NVDALSNHGKVSSFKNIEQSVAKSILKP--PALAPKGISYLFLGKSSFLEASNLGQGISS 650
N + + K +SF NI + S+ + ++ + L +S SN Q I
Sbjct: 229 NTVFATQNSKTTSFINIGNGTSSSLQQQYQQPISLSSVPQESLDRSRSFNRSNSLQNIPQ 288
Query: 651 PKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKL-ANL 709
P + SS ++ Q +I+ S P V+ SF N S+G +N
Sbjct: 289 PDNTPSSPYSQQP-KISHQRSLSMQHHPSIFLVSN------SFNNGLSNASNGFSFRSNP 341
Query: 710 FLNRENGAKTSLSNN 724
L R N SLSNN
Sbjct: 342 PLGRSNSI--SLSNN 354
>UNIPROTKB|H7C016 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HGNC:HGNC:2327
EMBL:AC073063 ProteinModelPortal:H7C016 Ensembl:ENST00000452047
Bgee:H7C016 Uniprot:H7C016
Length = 229
Score = 125 (49.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/89 (37%), Positives = 44/89 (49%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH--DLSKYPCEN 533
C +LK C +G C F H + + T C H+ R C KGD C F H D++K P
Sbjct: 8 CEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECY 64
Query: 534 FVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
F +K G C+ + C F H P K +D P
Sbjct: 65 FYSKFGECSNKE-CPFLHIDPESKIKDCP 92
>UNIPROTKB|C9J7K5 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224
EMBL:AC069335 HGNC:HGNC:7112 IPI:IPI00946335
ProteinModelPortal:C9J7K5 SMR:C9J7K5 STRING:C9J7K5
Ensembl:ENST00000481705 ArrayExpress:C9J7K5 Bgee:C9J7K5
Uniprot:C9J7K5
Length = 148
Score = 108 (43.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNC 520
C +++ G C+EGD C++SHD S C +F R C+ GD C
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRC 104
Score = 107 (42.7 bits), Expect = 0.00014, P = 0.00014
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 500 TKSTKACCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPK 555
TK C +F C +GDNC + HDLS P C+ F +G+C GD C S L P+
Sbjct: 56 TKQV-TCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRRSLTLSPR 113
>ZFIN|ZDB-GENE-020213-2 [details] [associations]
symbol:mkrn2 "makorin, ring finger protein, 2"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISS] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097
Prosite:PS00518 ZFIN:ZDB-GENE-020213-2 GO:GO:0007399 GO:GO:0030154
GO:GO:0006355 GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 EMBL:AF277172 EMBL:BC065352 IPI:IPI00493411
RefSeq:NP_694511.1 UniGene:Dr.77762 STRING:Q9DFG8
Ensembl:ENSDART00000019997 Ensembl:ENSDART00000130504 GeneID:170783
KEGG:dre:170783 CTD:23609 OrthoDB:EOG4229K2 NextBio:20797101
ArrayExpress:Q9DFG8 Bgee:Q9DFG8 InterPro:IPR026293
PANTHER:PTHR11224:SF17 Uniprot:Q9DFG8
Length = 414
Score = 126 (49.4 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C ++L G C+EG +C FSHD + +K + C ++ R +C GD C +DH
Sbjct: 8 CRYFLHGVCREGSRCLFSHD-LTTSKPSTICKYYQRGACAYGDRCRYDH 55
Score = 49 (22.3 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 522 FDHDLSKYPCENF-VAKGFCNRGDNCLFSHKLPP-KEQDPPTP 562
F +SK C+ F +G C G C + H + +P P
Sbjct: 317 FKSGVSKKACKYFDQGRGTCPFGGKCFYMHAYADGRRAEPDKP 359
Score = 44 (20.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 534 FVAKGFCNRGDNCLFSH 550
F+A G C G++C + H
Sbjct: 172 FLAAGQCQYGESCPYLH 188
>UNIPROTKB|Q6EE22 [details] [associations]
symbol:UNK "RING finger protein unkempt homolog"
species:9615 "Canis lupus familiaris" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184 SMART:SM00356
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:NOG69137 HOVERGEN:HBG061441 HOGENOM:HOG000115711
OrthoDB:EOG4QRH3P EMBL:AY422569 RefSeq:NP_001003390.1
UniGene:Cfa.10768 ProteinModelPortal:Q6EE22 GeneID:444855
KEGG:cfa:444855 CTD:85451 InParanoid:Q6EE22 NextBio:20831746
Uniprot:Q6EE22
Length = 810
Score = 105 (42.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 41/144 (28%), Positives = 62/144 (43%)
Query: 514 CMKGDNCPFDHDLSK---YP-------CENFVAKGFCNRGDNCLFSH-KLPPKEQDPPTP 562
C GD C + H ++ +P C + G C RG C F+H + PP D
Sbjct: 272 CENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPS 331
Query: 563 STCTPELKPSPPLY---ASNLLKPLNNNKVSHQNVDAL-SNHGKVSSFKNIEQSVAKSIL 618
ST + +P P LY A+ P++ + ++ L + + S N+ S SI
Sbjct: 332 STVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSTLLCRNSNLGSPSNLCGSPPGSIR 391
Query: 619 KPPALAPKGISYLFLGKSSFLEAS 642
KPP L +GI +F G+S S
Sbjct: 392 KPPNL--EGI--VFPGESGLAPGS 411
Score = 78 (32.5 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHY--LKGRCQEGDKCKFSHDTVPLTK--------STK 504
R+ +RR N P YC Y G C EGD+C F H T T+ T
Sbjct: 71 RRRSIRRRDGTFNYSPDV--YCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTG 128
Query: 505 ACCHF--ARNSCMK-GDNCPFDH 524
C H ++ +C K G +C F H
Sbjct: 129 ICIHETDSKGNCTKNGLHCAFAH 151
>UNIPROTKB|Q9UHC7 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 Reactome:REACT_6900 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003682 GO:GO:0003676 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH236950 EMBL:CH471070
eggNOG:COG5084 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 KO:K15687 EMBL:AC069335 CTD:23608
HOVERGEN:HBG066965 OMA:YQRGCCA OrthoDB:EOG45DWPM EMBL:AF192784
EMBL:AF192793 EMBL:AF192789 EMBL:AF192790 EMBL:AF192791
EMBL:AF192792 EMBL:AM236048 EMBL:AF117233 EMBL:AL136812
EMBL:AK127030 EMBL:AK315552 EMBL:BC025955 EMBL:BC037400
EMBL:BC064838 EMBL:AB209298 IPI:IPI00033350 IPI:IPI00921845
IPI:IPI00946774 IPI:IPI00973591 RefSeq:NP_001138597.1
RefSeq:NP_038474.2 UniGene:Hs.741212 ProteinModelPortal:Q9UHC7
SMR:Q9UHC7 IntAct:Q9UHC7 MINT:MINT-1365598 STRING:Q9UHC7
PhosphoSite:Q9UHC7 DMDM:67477468 PRIDE:Q9UHC7 DNASU:23608
Ensembl:ENST00000255977 Ensembl:ENST00000443720
Ensembl:ENST00000474576 GeneID:23608 KEGG:hsa:23608 UCSC:uc003vvs.2
GeneCards:GC07M140152 HGNC:HGNC:7112 HPA:HPA000567 MIM:607754
neXtProt:NX_Q9UHC7 PharmGKB:PA30831 InParanoid:Q9UHC7
PhylomeDB:Q9UHC7 GenomeRNAi:23608 NextBio:46308 ArrayExpress:Q9UHC7
Bgee:Q9UHC7 CleanEx:HS_MKRN1 Genevestigator:Q9UHC7
GermOnline:ENSG00000133606 Uniprot:Q9UHC7
Length = 482
Score = 129 (50.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/90 (35%), Positives = 45/90 (50%)
Query: 500 TKSTKACCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPK 555
TK C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K
Sbjct: 56 TKQV-TCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLK 113
Query: 556 EQDPP-TPSTCTPELKPSPPLYASNLLKPL 584
+++ T T L S L S+++ PL
Sbjct: 114 QEEATATELTTKSSLAASSSL--SSIVGPL 141
Score = 119 (46.9 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD S C +F R C+ GD C ++H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCRYEH 108
Score = 57 (25.1 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 526 LSKYPCENF-VAKGFCNRGDNCLFSHKLPPKEQDPP 560
+S C F +G C G NC + H P ++ P
Sbjct: 365 MSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP 400
Score = 49 (22.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 525 DLSKYPCENFVAKGFCNRGDNCLFSH 550
+ K C + A G C G+NC++ H
Sbjct: 208 ETKKQLCP-YAAVGECRYGENCVYLH 232
>UNIPROTKB|F1P815 [details] [associations]
symbol:UNK "RING finger protein unkempt homolog"
species:9615 "Canis lupus familiaris" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GeneTree:ENSGT00390000012005
OMA:HLEQVDK EMBL:AAEX03006289 Ensembl:ENSCAFT00000007926
Uniprot:F1P815
Length = 885
Score = 105 (42.0 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 41/144 (28%), Positives = 62/144 (43%)
Query: 514 CMKGDNCPFDHDLSK---YP-------CENFVAKGFCNRGDNCLFSH-KLPPKEQDPPTP 562
C GD C + H ++ +P C + G C RG C F+H + PP D
Sbjct: 347 CENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPS 406
Query: 563 STCTPELKPSPPLY---ASNLLKPLNNNKVSHQNVDAL-SNHGKVSSFKNIEQSVAKSIL 618
ST + +P P LY A+ P++ + ++ L + + S N+ S SI
Sbjct: 407 STVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSTLLCRNSNLGSPSNLCGSPPGSIR 466
Query: 619 KPPALAPKGISYLFLGKSSFLEAS 642
KPP L +GI +F G+S S
Sbjct: 467 KPPNL--EGI--VFPGESGLAPGS 486
Score = 78 (32.5 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHY--LKGRCQEGDKCKFSHDTVPLTK--------STK 504
R+ +RR N P YC Y G C EGD+C F H T T+ T
Sbjct: 146 RRRSIRRRDGTFNYSPDV--YCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTG 203
Query: 505 ACCHF--ARNSCMK-GDNCPFDH 524
C H ++ +C K G +C F H
Sbjct: 204 ICIHETDSKGNCTKNGLHCAFAH 226
>UNIPROTKB|F1MF12 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 OMA:YQRGCCA
EMBL:DAAA02011734 EMBL:DAAA02011733 IPI:IPI00701209
Ensembl:ENSBTAT00000010932 ArrayExpress:F1MF12 Uniprot:F1MF12
Length = 480
Score = 129 (50.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 502 STKACCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQ 557
S +C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K++
Sbjct: 57 SVFSCWYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYF-QRGYCIYGDRCRYEHSKPLKQE 115
Query: 558 DPP-TPSTCTPELKPSPPLYASNLLKPLNNNKVSHQN 593
+ T T L S L + +N + +N
Sbjct: 116 EATATDLTAKSSLAASSSLSSVGPTVDMNMGEAESRN 152
Score = 113 (44.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD C +F R C+ GD C ++H
Sbjct: 61 CWYFMHGVCKEGDNCRYSHDLSDSPYGV-VCKYFQRGYCIYGDRCRYEH 108
Score = 57 (25.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 526 LSKYPCENF-VAKGFCNRGDNCLFSHKLPPKEQDPP 560
+S C F +G C G NC + H P ++ P
Sbjct: 364 MSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP 399
>UNIPROTKB|Q9C0B0 [details] [associations]
symbol:UNK "RING finger protein unkempt homolog"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:NOG69137
HOVERGEN:HBG061441 HOGENOM:HOG000115711 OrthoDB:EOG4QRH3P CTD:85451
EMBL:AB051540 EMBL:BC053362 IPI:IPI00028276 RefSeq:NP_001073888.2
UniGene:Hs.584768 UniGene:Hs.732048 ProteinModelPortal:Q9C0B0
SMR:Q9C0B0 IntAct:Q9C0B0 MINT:MINT-2816977 STRING:Q9C0B0
PhosphoSite:Q9C0B0 DMDM:47117622 PaxDb:Q9C0B0 PRIDE:Q9C0B0
Ensembl:ENST00000293218 GeneID:85451 KEGG:hsa:85451 UCSC:uc002jpm.3
GeneCards:GC17P073780 HGNC:HGNC:29369 HPA:HPA023636 HPA:HPA027962
neXtProt:NX_Q9C0B0 PharmGKB:PA162408651 InParanoid:Q9C0B0
GenomeRNAi:85451 NextBio:76061 Bgee:Q9C0B0 CleanEx:HS_UNK
Genevestigator:Q9C0B0 GermOnline:ENSG00000132478 Uniprot:Q9C0B0
Length = 810
Score = 104 (41.7 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 41/144 (28%), Positives = 62/144 (43%)
Query: 514 CMKGDNCPFDHDLSK---YP-------CENFVAKGFCNRGDNCLFSH-KLPPKEQDPPTP 562
C GD C + H ++ +P C + G C RG C F+H + PP D
Sbjct: 272 CENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPS 331
Query: 563 STCTPELKPSPPLY---ASNLLKPLNNNKVSHQNVDAL-SNHGKVSSFKNIEQSVAKSIL 618
S + +P P LY A+ P++ + ++ AL + + S N+ S SI
Sbjct: 332 SAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIR 391
Query: 619 KPPALAPKGISYLFLGKSSFLEAS 642
KPP L +GI +F G+S S
Sbjct: 392 KPPNL--EGI--VFPGESGLAPGS 411
Score = 78 (32.5 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHY--LKGRCQEGDKCKFSHDTVPLTK--------STK 504
R+ +RR N P YC Y G C EGD+C F H T T+ T
Sbjct: 71 RRRSIRRRDGTFNYSPDV--YCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTG 128
Query: 505 ACCHF--ARNSCMK-GDNCPFDH 524
C H ++ +C K G +C F H
Sbjct: 129 ICIHETDSKGNCTKNGLHCAFAH 151
>UNIPROTKB|B7Z7B0 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000212457
HOVERGEN:HBG051108 OrthoDB:EOG4KH2VQ UniGene:Hs.489287
HGNC:HGNC:2327 EMBL:AC073063 EMBL:AK301745 IPI:IPI00924476
SMR:B7Z7B0 STRING:B7Z7B0 Ensembl:ENST00000441580 UCSC:uc011kix.2
Uniprot:B7Z7B0
Length = 191
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH-DL-SK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H D SK
Sbjct: 11 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 67
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 68 IKDCPWYDRGFCKHGPLCRHRH 89
Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
Identities = 34/104 (32%), Positives = 44/104 (42%)
Query: 476 CHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENF 534
C+ Y K G C + C F H P +K K C + R C G C H + C N+
Sbjct: 43 CYFYSKFGECSNKE-CPFLHID-PESK-IKDCPWYDRGFCKHGPLCRHRHT-RRVICVNY 98
Query: 535 VAKGFCNRGDNCLFSH---KLPP-KEQDPPTPSTCTPELKPSPP 574
+ GFC G +C F H +LP + PP P P K P
Sbjct: 99 LV-GFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQRTP 141
>UNIPROTKB|G3V789 [details] [associations]
symbol:Mkrn1 "Protein Mkrn1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 GeneTree:ENSGT00390000014093
OMA:YQRGCCA ProteinModelPortal:G3V789 Ensembl:ENSRNOT00000013124
Uniprot:G3V789
Length = 481
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 31/84 (36%), Positives = 42/84 (50%)
Query: 500 TKSTKACCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPK 555
TK C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K
Sbjct: 56 TKQV-TCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYF-QRGYCVYGDRCRYEHSKPLK 113
Query: 556 EQDPPTPSTCTP-ELKPSPPLYAS 578
+++ T T KPSP +S
Sbjct: 114 QEEV----TATDLSAKPSPAASSS 133
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD C +F R C+ GD C ++H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYGV-VCKYFQRGYCVYGDRCRYEH 108
Score = 57 (25.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 526 LSKYPCENF-VAKGFCNRGDNCLFSHKLPPKEQDPP 560
+S C F +G C G NC + H P ++ P
Sbjct: 365 MSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP 400
>UNIPROTKB|E2RRA5 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 OMA:YQRGCCA
EMBL:AAEX03010214 EMBL:AAEX03010213 Ensembl:ENSCAFT00000006351
Uniprot:E2RRA5
Length = 487
Score = 127 (49.8 bits), Expect = 0.00016, P = 0.00016
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 504 KACCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQD 558
K+C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K+++
Sbjct: 64 KSCKYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYF-QRGYCIYGDRCRYEHSKPLKQEE 121
Score = 117 (46.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 474 KYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
K C +++ G C+EGD C++SHD C +F R C+ GD C ++H
Sbjct: 64 KSCKYFMHGVCKEGDNCRYSHDLSDSPYGV-VCKYFQRGYCIYGDRCRYEH 113
Score = 57 (25.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 526 LSKYPCENF-VAKGFCNRGDNCLFSHKLPPKEQDPP 560
+S C F +G C G NC + H P ++ P
Sbjct: 370 MSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP 405
Score = 49 (22.3 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 525 DLSKYPCENFVAKGFCNRGDNCLFSH 550
+ K C + A G C G+NC++ H
Sbjct: 213 ETKKQLCP-YAAVGECRYGENCVYLH 237
>UNIPROTKB|F1RVY8 [details] [associations]
symbol:UNK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000012005 OMA:HLEQVDK EMBL:CU928968
EMBL:CU928029 Ensembl:ENSSSCT00000018726 Uniprot:F1RVY8
Length = 811
Score = 102 (41.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 41/144 (28%), Positives = 62/144 (43%)
Query: 514 CMKGDNCPFDHDLSK---YP-------CENFVAKGFCNRGDNCLFSH-KLPPKEQDPPTP 562
C GD C + H ++ +P C + G C RG C F+H + PP D
Sbjct: 272 CENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLGDDLQPS 331
Query: 563 STCTPELKPSPPLY---ASNLLKPLNNNKVSHQNVDAL-SNHGKVSSFKNIEQSVAKSIL 618
S + +P P LY A+ P++ + ++ AL + + S N+ S SI
Sbjct: 332 SAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIR 391
Query: 619 KPPALAPKGISYLFLGKSSFLEAS 642
KPP L +GI +F G+S S
Sbjct: 392 KPPNL--EGI--VFPGESGLAPGS 411
Score = 78 (32.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHY--LKGRCQEGDKCKFSHDTVPLTK--------STK 504
R+ +RR N P YC Y G C EGD+C F H T T+ T
Sbjct: 71 RRRSIRRRDGTFNYSPDV--YCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTG 128
Query: 505 ACCHF--ARNSCMK-GDNCPFDH 524
C H ++ +C K G +C F H
Sbjct: 129 ICIHETDSKGNCTKNGLHCAFAH 151
>WB|WBGene00020827 [details] [associations]
symbol:T26A8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0040011 GO:GO:0040018 GO:GO:0003676 GO:GO:0040035
GO:GO:0040019 eggNOG:NOG245027 GeneTree:ENSGT00530000063288
EMBL:FO081662 PIR:T29668 RefSeq:NP_501435.1
ProteinModelPortal:Q22805 SMR:Q22805 IntAct:Q22805 STRING:Q22805
PaxDb:Q22805 EnsemblMetazoa:T26A8.4.1 EnsemblMetazoa:T26A8.4.2
GeneID:177643 KEGG:cel:CELE_T26A8.4 UCSC:T26A8.4.1 CTD:177643
WormBase:T26A8.4 HOGENOM:HOG000021418 InParanoid:Q22805 OMA:YANSFCK
NextBio:897736 Uniprot:Q22805
Length = 574
Score = 135 (52.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C + +G C++GD C +SH + C +A + C KG C H ++PC++F
Sbjct: 171 CKFFREGYCRDGDNCLYSHQAEDSLRRPVLCNFYANSFCKKGLQCLMLH--GEFPCKSF- 227
Query: 536 AKGFCNRGDNCLFSH 550
KG CN D C FSH
Sbjct: 228 HKGQCNH-DPCRFSH 241
Score = 39 (18.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 770 TPRGLNFLSTGKALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSS 821
+P+G N +A+ N ++N + + S +V+ ++SP +P S SS
Sbjct: 435 SPQGFNL----EAMLNK-MANGEKLISSPRNNVV----DDSPASPPPSNYSS 477
>UNIPROTKB|F1SRP7 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0003682 GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224 KO:K15687
CTD:23608 GeneTree:ENSGT00390000014093 OMA:YQRGCCA EMBL:CU655865
RefSeq:XP_003134656.1 UniGene:Ssc.10393 Ensembl:ENSSSCT00000017962
GeneID:100514261 KEGG:ssc:100514261 Uniprot:F1SRP7
Length = 482
Score = 126 (49.4 bits), Expect = 0.00020, P = 0.00020
Identities = 30/83 (36%), Positives = 40/83 (48%)
Query: 500 TKSTKACCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPK 555
TK C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K
Sbjct: 56 TKQV-TCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYF-QRGYCIYGDRCRYEHSKPLK 113
Query: 556 EQDPP-TPSTCTPELKPSPPLYA 577
+++ T T L S L A
Sbjct: 114 QEETTATDLTAESSLAASSSLSA 136
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD C +F R C+ GD C ++H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYGV-VCKYFQRGYCIYGDRCRYEH 108
Score = 57 (25.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 526 LSKYPCENF-VAKGFCNRGDNCLFSHKLPPKEQDPP 560
+S C F +G C G NC + H P ++ P
Sbjct: 365 MSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP 400
>UNIPROTKB|C9IY57 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003682 GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 EMBL:AC069335 HGNC:HGNC:7112 IPI:IPI00947551
ProteinModelPortal:C9IY57 SMR:C9IY57 STRING:C9IY57
Ensembl:ENST00000471104 ArrayExpress:C9IY57 Bgee:C9IY57
Uniprot:C9IY57
Length = 193
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 514 CMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQDPP-TPSTCTPE 568
C +GDNC + HDLS P C+ F +G+C GD C + H P K+++ T T
Sbjct: 5 CKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLKQEEATATELTTKSS 63
Query: 569 LKPSPPLYASNLLKPL 584
L S L S+++ PL
Sbjct: 64 LAASSSL--SSIVGPL 77
Score = 105 (42.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 480 LKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
+ G C+EGD C++SHD S C +F R C+ GD C ++H
Sbjct: 1 MHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCRYEH 44
Score = 49 (22.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 525 DLSKYPCENFVAKGFCNRGDNCLFSH 550
+ K C + A G C G+NC++ H
Sbjct: 144 ETKKQLCP-YAAVGECRYGENCVYLH 168
>UNIPROTKB|B0F0H3 [details] [associations]
symbol:mkrn2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:8355 "Xenopus laevis" [GO:0005622
"intracellular" evidence=IC] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0009798 "axis specification" evidence=IMP]
[GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IMP]
[GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0050768 "negative
regulation of neurogenesis" evidence=IMP] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0014065 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0003676 GO:GO:0005622
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0043491
GO:GO:0009798 GO:GO:0050768 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 KO:K15687 HOVERGEN:HBG066965 InterPro:IPR026293
PANTHER:PTHR11224:SF17 EMBL:EF626804 RefSeq:NP_001116070.1
UniGene:Xl.76333 GeneID:100141485 KEGG:xla:100141485 Uniprot:B0F0H3
Length = 409
Score = 127 (49.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 468 LKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLS 527
+ PK V C ++L G C+EG +C FSHD + +K + C F R C G C +DH
Sbjct: 1 MSPKQVT-CRYFLHGVCREGSRCLFSHD-LATSKPSTVCRFFLRGQCAYGTRCRYDH--- 55
Query: 528 KYPCENFV 535
PC V
Sbjct: 56 VKPCNGTV 63
Score = 42 (19.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 534 FVAKGFCNRGDNCLFSH 550
F G C+ GD+C + H
Sbjct: 165 FAQAGECHCGDSCPYLH 181
>UNIPROTKB|E2REH2 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AAEX03012060
Ensembl:ENSCAFT00000007980 Uniprot:E2REH2
Length = 416
Score = 109 (43.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EG++C FSHD ST C ++ + C G C +DH
Sbjct: 8 CRYFMHGVCREGNQCLFSHDLANSKPST-ICKYYQKGYCAYGTRCRYDH 55
Score = 60 (26.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 522 FDHDLSKYPCENFV-AKGFCNRGDNCLFSHKLPP-KEQDPPTP 562
F + K C+ F KG C G CL+ H P + +P P
Sbjct: 318 FKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 360
>POMBASE|SPCC1739.01 [details] [associations]
symbol:SPCC1739.01 "zf-CCCH type zinc finger protein"
species:4896 "Schizosaccharomyces pombe" [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 PomBase:SPCC1739.01
GO:GO:0005829 EMBL:CU329672 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5084 InterPro:IPR026290 PANTHER:PTHR11224
OrthoDB:EOG49S9H4 PIR:T41213 RefSeq:NP_588409.2
ProteinModelPortal:O74463 EnsemblFungi:SPCC1739.01.1 GeneID:2539315
KEGG:spo:SPCC1739.01 NextBio:20800480 Uniprot:O74463
Length = 547
Score = 134 (52.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 86/345 (24%), Positives = 142/345 (41%)
Query: 507 CHFARN-SCMKGDNCPFDHDL-SKYP-CENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPS 563
C F RN +C G+NCPF H L ++ P C+ F+ KG C G C SH LP P S
Sbjct: 47 CKFFRNGTCTAGENCPFSHSLETERPICKYFL-KGNCKFGPKCALSHALPGNTNLPNGTS 105
Query: 564 TCTPELKPSPPLYASNLLKPLNNNKVSHQ-NVDALSNHG-KVSSFK--NIEQSVAKSILK 619
T T + +S K + N++S + + N K ++ ++ + A S
Sbjct: 106 TNTMASMAANGGASSVASKQMGANQISPSLSSKTMKNPADKANNTTATDVRGNTATSPYF 165
Query: 620 PPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDS-SKFANQTAQIASDSVQSRDETP 678
P + +P S G S+ +SS S S +F N ++ S +P
Sbjct: 166 PFSRSPGRHS----GNSTINGMMTTPNFLSSGVNSRSVDEFNNSSSGFPSSLNGIPIASP 221
Query: 679 RRIPVATKGVNFLSFGNRSLEDSSGKKLANLF--LNRENGAKTSLSNNFGLHETSSSSSC 736
P+AT +F + S + G K LF + EN + S L T + C
Sbjct: 222 ---PLATSPTSFSLASSASSTNLGGSK-GLLFQQMTSENN-RDYFSRRPTLLNTYGNR-C 275
Query: 737 GENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTISNNQARLR 796
D ++ +++ S K++ +P ++ P + P+ TG +L+ ++ +Q+
Sbjct: 276 SSTDTL--SSLSRLTSQDPLKAS-LPLQSPP-LAPK------TGVSLSRPRLTLDQSLGN 325
Query: 797 SSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHS 841
S G IN+ + + S SLP + L H +D S
Sbjct: 326 LSLGSGINQRRQVPRSNSYAGAFPSVVSASLP-TKVDLNHQMDVS 369
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 342 TVRNETQCKTKIFADGTAT 360
TV+N K F +GT T
Sbjct: 38 TVKNLQHVPCKFFRNGTCT 56
>DICTYBASE|DDB_G0281657 [details] [associations]
symbol:DDB_G0281657 "Probable E3 ubiquitin-protein
ligase makorin-2" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 dictyBase:DDB_G0281657 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AAFI02000042 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 eggNOG:NOG268458 KO:K15687 RefSeq:XP_640562.1
ProteinModelPortal:Q54TM9 EnsemblProtists:DDB0204588 GeneID:8623172
KEGG:ddi:DDB_G0281657 InParanoid:Q54TM9 Uniprot:Q54TM9
Length = 974
Score = 104 (41.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 65/307 (21%), Positives = 115/307 (37%)
Query: 534 FVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQN 593
F G C G NC FSH + P + P T +K S L +N NNN Q
Sbjct: 31 FFKNGNCLSGSNCKFSHDITPSDTISTPPITQKINIKSSETLKQNN-----NNNYQPPQY 85
Query: 594 -VDALSNHGKVSSFKNIEQSVAKS---ILKPPA--LAPKGISYLFLGKSSFLEASNLGQG 647
+ + V NI + S ++ P + K I +S +N+ +
Sbjct: 86 YTQSQTQQNPVLITTNINTNTTTSTNTVVTSPLQQYSKKSIEISSSDNNSSSIKNNIIE- 144
Query: 648 ISSPKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKG----VNFLSFGNRSLEDSSG 703
ISS ++++ N +++ S+ + P+ +KG + + + SL S+G
Sbjct: 145 ISSTNNNNNNNNNNNNNNNNNNNNNSKINSQENTPIVSKGFVIPIENIIHSSPSLTSSTG 204
Query: 704 K-------KLANLFLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQ 756
+N F+N S +NN + +++++ N+ N +N+
Sbjct: 205 LPSPKNGFNSSNDFMNNNLNGNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 264
Query: 757 KSNDMPKKTQPAITPRGLNFLSTGKALANNTISN--NQARLRSSAGDVINRSLEESPNTP 814
SN + + K NN +N N ++ ++ IN + S N
Sbjct: 265 NSNKAYSLLDEGFNRESIPNSTFIKNYNNNNTNNLQNPYQIGTTPIQFINGN--NSNNNN 322
Query: 815 NMSQNSS 821
N + NSS
Sbjct: 323 NNNSNSS 329
Score = 74 (31.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 469 KPKTVKYCHHYLKGRCQEGDKCKFSHDTVP 498
K +K C + G C G CKFSHD P
Sbjct: 23 KSNPIK-CRFFKNGNCLSGSNCKFSHDITP 51
>TAIR|locus:2028175 [details] [associations]
symbol:CPSF30 "AT1G30460" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=RCA;IDA;TAS]
[GO:0004519 "endonuclease activity" evidence=IDA] [GO:0004521
"endoribonuclease activity" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0006979 "response to oxidative
stress" evidence=IMP] [GO:1900363 "regulation of mRNA
polyadenylation" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006378 EMBL:AC009917 GO:GO:0003723
GO:GO:0005516 GO:GO:0004521 eggNOG:COG5084 GO:GO:0005847 KO:K14404
EMBL:EU250988 EMBL:AY140901 IPI:IPI00527840 IPI:IPI00846485
PIR:B86429 PIR:C86429 RefSeq:NP_001077629.1 RefSeq:NP_174334.2
UniGene:At.40546 UniGene:At.69479 ProteinModelPortal:A9LNK9
SMR:A9LNK9 IntAct:A9LNK9 STRING:A9LNK9 PaxDb:A9LNK9 PRIDE:A9LNK9
EnsemblPlants:AT1G30460.1 GeneID:839925 KEGG:ath:AT1G30460
TAIR:At1g30460 HOGENOM:HOG000242019 InParanoid:A9LNK9 OMA:AKMTSRI
PhylomeDB:A9LNK9 ProtClustDB:CLSN2714254 Genevestigator:A9LNK9
GO:GO:1900363 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
Uniprot:A9LNK9
Length = 631
Score = 125 (49.1 bits), Expect = 0.00039, P = 0.00039
Identities = 31/90 (34%), Positives = 39/90 (43%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFAR--NSCMKGDNCPFDHDLSKYPCEN 533
C H+L+G C +GD C F H K+ C F R C + D C + H N
Sbjct: 66 CRHWLRGLCMKGDACGFLHQ---FDKARMPICRFFRLYGECREQD-CVYKHTNEDIKECN 121
Query: 534 FVAKGFCNRGDNCLFSH-KLPPKEQDPPTP 562
GFC G +C + H KLP PP P
Sbjct: 122 MYKLGFCPNGPDCRYRHAKLP----GPPPP 147
>UNIPROTKB|F6QHJ6 [details] [associations]
symbol:UNK "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000012005 OMA:HLEQVDK EMBL:DAAA02049511
EMBL:DAAA02049512 IPI:IPI00701968 Ensembl:ENSBTAT00000021663
Uniprot:F6QHJ6
Length = 809
Score = 99 (39.9 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 40/144 (27%), Positives = 62/144 (43%)
Query: 514 CMKGDNCPFDHDLSK---YP-------CENFVAKGFCNRGDNCLFSH-KLPPKEQDPPTP 562
C GD+C + H ++ +P C + G C RG C F+H + PP D
Sbjct: 272 CENGDSCQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPS 331
Query: 563 STCTPELKPSPPLY---ASNLLKPLNNNKVSHQNVDAL-SNHGKVSSFKNIEQSVAKSIL 618
S + +P P LY A+ P++ + ++ AL + + S N+ S SI
Sbjct: 332 SAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIR 391
Query: 619 KPPALAPKGISYLFLGKSSFLEAS 642
KP L +GI +F G+S S
Sbjct: 392 KPSNL--EGI--VFPGESGLAPGS 411
Score = 81 (33.6 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 28/83 (33%), Positives = 35/83 (42%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHY--LKGRCQEGDKCKFSHDTVPLTK--------STK 504
R+ +RR N P YC Y G C EGD+C F H T T+ T
Sbjct: 71 RRRSIRRRDGTFNYSPDV--YCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTG 128
Query: 505 ACCHF--ARNSCMK-GDNCPFDH 524
C H A+ +C K G +C F H
Sbjct: 129 ICIHETDAKGNCTKNGLHCAFAH 151
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 14/69 (20%), Positives = 28/69 (40%)
Query: 729 ETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTI 788
E +S + E+ V+K + ++ P+ L +AL+ +T+
Sbjct: 683 EAGERASAAGAECELAREQRDALEVQVKKLQEELERLHSGPDPQALPAFPGLEALSLSTL 742
Query: 789 SNNQARLRS 797
+ Q RLR+
Sbjct: 743 HSLQKRLRA 751
>ASPGD|ASPL0000046029 [details] [associations]
symbol:AN1537 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:BN001307 GO:GO:0008270 GO:GO:0003676
EnsemblFungi:CADANIAT00008164 HOGENOM:HOG000158348 OMA:KVAICKD
Uniprot:C8VMX4
Length = 467
Score = 123 (48.4 bits), Expect = 0.00041, P = 0.00041
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 470 PKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSK 528
P V C +L+ G+C G+ C SH+ P + AC HF R C + C + H +
Sbjct: 296 PNKVAICKDFLQTGKCSAGNSCDLSHEPSP--HRSPACVHFLRGRCSNPE-CRYAH-VRV 351
Query: 529 YP----CENFVAKGFCNRGDNCLFSH 550
P C F G+C++G+ C H
Sbjct: 352 TPGAPVCRAFATLGYCDKGETCEERH 377
>UNIPROTKB|Q9H000 [details] [associations]
symbol:MKRN2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005622 "intracellular"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 EMBL:CH471055 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 HOVERGEN:HBG066965 CTD:23609
OrthoDB:EOG4229K2 InterPro:IPR026293 PANTHER:PTHR11224:SF17
EMBL:AF302084 EMBL:AF277170 EMBL:AF277164 EMBL:AF277165
EMBL:AF277166 EMBL:AF277167 EMBL:AF277168 EMBL:AF277169
EMBL:AF161555 EMBL:AK091318 EMBL:AC018500 EMBL:BC001799
EMBL:BC015715 EMBL:AL834512 IPI:IPI00396406 RefSeq:NP_054879.3
UniGene:Hs.591666 ProteinModelPortal:Q9H000 SMR:Q9H000
IntAct:Q9H000 STRING:Q9H000 PhosphoSite:Q9H000 DMDM:45645205
PRIDE:Q9H000 DNASU:23609 Ensembl:ENST00000170447 GeneID:23609
KEGG:hsa:23609 UCSC:uc003bxd.3 GeneCards:GC03P012598 HGNC:HGNC:7113
HPA:HPA037559 HPA:HPA037560 MIM:608426 neXtProt:NX_Q9H000
PharmGKB:PA30832 InParanoid:Q9H000 OMA:KGYCAYG ChiTaRS:MKRN2
GenomeRNAi:23609 NextBio:46312 ArrayExpress:Q9H000 Bgee:Q9H000
CleanEx:HS_MKRN2 Genevestigator:Q9H000 GermOnline:ENSG00000075975
Uniprot:Q9H000
Length = 416
Score = 108 (43.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EG +C FSHD ST C ++ + C G C +DH
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPST-ICKYYQKGYCAYGTRCRYDH 55
Score = 60 (26.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 522 FDHDLSKYPCENFV-AKGFCNRGDNCLFSHKLPP-KEQDPPTP 562
F + K C+ F KG C G CL+ H P + +P P
Sbjct: 318 FKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 360
>UNIPROTKB|F1MRH0 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Pfam:PF00097
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 GeneTree:ENSGT00390000014093
EMBL:DAAA02011734 EMBL:DAAA02011733 IPI:IPI00701209
Ensembl:ENSBTAT00000040303 ArrayExpress:F1MRH0 Uniprot:F1MRH0
Length = 340
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 508 HFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQDPP-TP 562
+F C +GDNC + HDLS P C+ F +G+C GD C + H P K+++ T
Sbjct: 75 YFMHGVCKEGDNCRYSHDLSDSPYGVVCKYF-QRGYCIYGDRCRYEHSKPLKQEEATATD 133
Query: 563 STCTPELKPSPPLYASNLLKPLNNNKVSHQN 593
T L S L + +N + +N
Sbjct: 134 LTAKSSLAASSSLSSVGPTVDMNMGEAESRN 164
>ASPGD|ASPL0000012800 [details] [associations]
symbol:chiA species:162425 "Emericella nidulans"
[GO:0004568 "chitinase activity" evidence=ISS;RCA] [GO:0006032
"chitin catabolic process" evidence=ISS;RCA] [GO:0043169 "cation
binding" evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0001896 "autolysis" evidence=IEA] InterPro:IPR001223
InterPro:IPR001579 InterPro:IPR013781 Pfam:PF00704 PROSITE:PS01095
GO:GO:0043169 Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445
GO:GO:0005975 GO:GO:0004553 EMBL:BN001302 CAZy:GH18 KO:K01183
EMBL:AACD01000145 PIR:JW0067 RefSeq:XP_681510.1
ProteinModelPortal:G5EB30 EnsemblFungi:CADANIAT00004295
GeneID:2869070 KEGG:ani:AN8241.2 HOGENOM:HOG000159794 OMA:APWAPSS
Uniprot:G5EB30
Length = 961
Score = 126 (49.4 bits), Expect = 0.00052, P = 0.00052
Identities = 74/330 (22%), Positives = 128/330 (38%)
Query: 554 PKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNN-KVSHQNVDALSNHGKVSSFKNIEQS 612
P T ST TP PSP +S+ + + + K S S + S S
Sbjct: 389 PTTSTTSTTSTTTPTPSPSPSTASSSTTETVTPSPKPSPSESSTTSETSSLPSTSTPVVS 448
Query: 613 VAKSILKPP--ALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDS 670
S K P + AP S +G SS +S+ +P S S++ ++T+ S S
Sbjct: 449 ETPSETKTPTSSSAPPLSSSSPVGGSSSTASSSTSTPSETPSAS-STRAVSETSTHISTS 507
Query: 671 VQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHET 730
S ET + S + ++ SS ++ TS S++ + T
Sbjct: 508 TSSGPETSLTGSSTSVPATSSSVPSSAISPSSTPVISET----PRPPVTSSSSSTFVSST 563
Query: 731 SSSSSCGENDAEVGNATTQIFSNSVQKSNDMPK-KTQPAITPRGLNFLSTGKALANNTIS 789
S+S+ C E+ +G ++ S + S T P T F + G +++ T S
Sbjct: 564 STSTDCSESSTAIGTHSSSSISETPSASTPAASPSTSPETTKTLTVFPTPGSSVSTGTTS 623
Query: 790 NN--QARLRSSAG---DVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQG 844
+ + + +++G + S + TP+ S + P + S+ T + SA G
Sbjct: 624 ASTLSSSVPATSGGHTETSTVSTSSANQTPSASTSKPLIPTNSASSTSTGSVTSTPSAPG 683
Query: 845 YYRSTSNSAQRALEFATKIEPKVKTNQSTV 874
S++ S + A T EP T+ +V
Sbjct: 684 VPSSSAGSDETATTSTTDSEP-TSTSSGSV 712
>MGI|MGI:1914277 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1914277 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH466523 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AF277171 EMBL:AK011295
EMBL:AK077926 EMBL:BC025547 IPI:IPI00620251 RefSeq:NP_075779.2
UniGene:Mm.101316 ProteinModelPortal:Q9ERV1 SMR:Q9ERV1
PhosphoSite:Q9ERV1 PRIDE:Q9ERV1 Ensembl:ENSMUST00000000449
GeneID:67027 KEGG:mmu:67027 InParanoid:Q6GTY9 NextBio:323348
Bgee:Q9ERV1 CleanEx:MM_MKRN2 Genevestigator:Q9ERV1
GermOnline:ENSMUSG00000000439 Uniprot:Q9ERV1
Length = 416
Score = 107 (42.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EG +C FSHD ST C ++ + C G C +DH
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPST-ICKYYQKGYCAYGARCRYDH 55
Score = 60 (26.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 522 FDHDLSKYPCENFV-AKGFCNRGDNCLFSHKLPP-KEQDPPTP 562
F + K C+ F KG C G CL+ H P + +P P
Sbjct: 318 FKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 360
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 107 (42.7 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EG +C FSHD ST C ++ + C G C +DH
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPST-ICKYYQKGYCAYGARCRYDH 55
Score = 60 (26.2 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 522 FDHDLSKYPCENFV-AKGFCNRGDNCLFSHKLPP-KEQDPPTP 562
F + K C+ F KG C G CL+ H P + +P P
Sbjct: 319 FKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 361
>UNIPROTKB|F8WAS8 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224
EMBL:AC069335 HGNC:HGNC:7112 IPI:IPI00945768
ProteinModelPortal:F8WAS8 SMR:F8WAS8 Ensembl:ENST00000495305
ArrayExpress:F8WAS8 Bgee:F8WAS8 Uniprot:F8WAS8
Length = 175
Score = 111 (44.1 bits), Expect = 0.00063, P = 0.00063
Identities = 31/100 (31%), Positives = 46/100 (46%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNC-----PFDHDLSKY- 529
C +++ G C+EGD C++SHD S C +F R C+ GD C P S +
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCSRALRPMRRTWSSHL 119
Query: 530 PCENFVAKGFCNRGDNCLFSHKLP-P-KEQDPPTPSTCTP 567
PC A+ +C G +S + P P +P+ TP
Sbjct: 120 PCS--AARTWCV-GSAWRWSMRKPTPVSAASGSSPTATTP 156
>UNIPROTKB|C9JYI0 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 GO:GO:0008270
GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224 EMBL:AC069335
HGNC:HGNC:7112 IPI:IPI00945351 ProteinModelPortal:C9JYI0 SMR:C9JYI0
STRING:C9JYI0 Ensembl:ENST00000480552 ArrayExpress:C9JYI0
Bgee:C9JYI0 Uniprot:C9JYI0
Length = 111
Score = 97 (39.2 bits), Expect = 0.00082, P = 0.00082
Identities = 30/96 (31%), Positives = 43/96 (44%)
Query: 480 LKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNC-----PFDHDLSKY-PCEN 533
+ G C+EGD C++SHD S C +F R C+ GD C P S + PC
Sbjct: 1 MHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCSRALRPMRRTWSSHLPCS- 58
Query: 534 FVAKGFCNRGDNCLFSHKLP-P-KEQDPPTPSTCTP 567
A+ +C G +S + P P +P+ TP
Sbjct: 59 -AARTWCV-GSAWRWSMRKPTPVSAASGSSPTATTP 92
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.127 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 879 838 0.00081 122 3 11 23 0.49 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 96
No. of states in DFA: 614 (65 KB)
Total size of DFA: 390 KB (2190 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 98.16u 0.11s 98.27t Elapsed: 00:00:09
Total cpu time: 98.18u 0.11s 98.29t Elapsed: 00:00:09
Start: Thu May 9 14:01:15 2013 End: Thu May 9 14:01:24 2013