BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002804
(879 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 166/293 (56%), Gaps = 46/293 (15%)
Query: 412 EQGITTKDKLDSGACNKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKL-PQNLKP 470
+Q + + K+D G K KRSA SK+ KA+K+ K R KRA++ LGV++LKL P KP
Sbjct: 292 DQTFSNEAKMDPGTSIK-KRSAPSKDAKARKRAKARIKRAQERIALGVKKLKLKPVAPKP 350
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K +KYC HYLKGRC EGDKCKFSHDT+P TK + CC+FA SCMKGD+CPFDHDLSKYP
Sbjct: 351 KPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCS-PCCYFATQSCMKGDDCPFDHDLSKYP 409
Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVS 590
C NF+ KGFC RGD+CLFSHK P+ AS+ P N VS
Sbjct: 410 CNNFITKGFCYRGDSCLFSHKGTPQS--------------------ASD--TPSANVTVS 447
Query: 591 HQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPK-GISYLFLGKSSFLEASNLGQGIS 649
+ A S S K +QSV +I K PA+ + S FL SS N
Sbjct: 448 STKITAAS----FSPQKTKKQSVRDAIAKLPAIQARVSSSVAFLKPSSHSNQRN------ 497
Query: 650 SPKKSDSSKFANQTAQIASDSVQSRDETPRRIP-VATKGVNFLSFGNRSLEDS 701
SD+S +++I ++ V P R P VA KG++FLS S ED+
Sbjct: 498 ---SSDAS-----SSKI-NEHVTPPQVPPLRKPSVAPKGMSFLSLDKTSQEDT 541
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 132/218 (60%), Gaps = 19/218 (8%)
Query: 427 NKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQE 486
N RKR+ L++E+KAKK + +R KRA + GV+RLKL +KPK VK CH YL G+CQ+
Sbjct: 387 NTRKRT-LTEERKAKKTKTKRIKRALQREAEGVKRLKLQPVIKPKVVKVCHFYLHGKCQQ 445
Query: 487 GDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNC 546
G+ CKFSHDT PLTKS K C H+AR SC+KGD+CP+DH+LSKYPC NF+ G C RGD C
Sbjct: 446 GNLCKFSHDTTPLTKS-KPCTHYARGSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKC 504
Query: 547 LFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLN-NNKVSHQNVDALSNHGKVSS 605
FSH +P E PS TP+ K S AS++ + N + S Q + + +S
Sbjct: 505 KFSHVIPTAE----GPS--TPDAKKS---NASSVPEKANCQEQTSRQKTSTVYSGEPATS 555
Query: 606 FKNIEQSVAKSIL-------KPPALAPKGISYLFLGKS 636
S+ K++ K P P+GI +L K+
Sbjct: 556 VPIKHHSILKNLAGISGNAQKVPVRIPRGIQFLPFNKA 593
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD CKF+HD L K + C ++ + C KG+NC + H S++P
Sbjct: 271 KGKQICKYFLEGRCIKGDHCKFNHDAE-LEKKKEVCKYYLQGYCTKGENCIYMH--SEFP 327
Query: 531 CENFVAKGFCNRGDNCLFSH 550
C+ + + C +GD C FSH
Sbjct: 328 CKFYHSGAKCYQGDKCKFSH 347
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
K + C ++L+GRC +GD+CKF HD L K + C + + C KG+NC + H+ ++P
Sbjct: 273 KGKQICKYFLEGRCIKGDQCKFDHDAE-LEKRKEICKFYLQGYCTKGENCIYMHN--EFP 329
Query: 531 CENFVAKGFCNRGDNCLFSH 550
C+ + + C +GDNC FSH
Sbjct: 330 CKFYHSGAKCYQGDNCKFSH 349
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
GN=ZC3H4 PE=1 SV=3
Length = 1303
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++++GRC GD C FSHD + L K + C + C + +NCP+ H +PC+ +
Sbjct: 396 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 452
Query: 536 AKGFCNRGDNCLFSH 550
G C GD+C+FSH
Sbjct: 453 TTGNCINGDDCMFSH 467
Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 470 PKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHD 525
PK + C Y+ G C + C + H P + +C+ GD+C F HD
Sbjct: 419 PKKRELCKFYITGFCARAENCPYMHGDFPCK------LYHTTGNCINGDDCMFSHD 468
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus
GN=Zc3h4 PE=1 SV=2
Length = 1304
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++++GRC GD C FSHD + L K + C + C + +NCP+ H +PC+ +
Sbjct: 395 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 451
Query: 536 AKGFCNRGDNCLFSH 550
G C GD+C+FSH
Sbjct: 452 TTGNCINGDDCMFSH 466
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 470 PKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHD 525
PK + C Y+ G C + C + H P + +C+ GD+C F HD
Sbjct: 418 PKKRELCKFYITGFCARAENCPYMHGDFPCK------LYHTTGNCINGDDCMFSHD 467
>sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein 8 OS=Mus musculus
GN=Zc3h8 PE=1 SV=2
Length = 305
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++L+ +C +GD+CKF HD + K + C ++ + C KG+NC + H S+YPC+ +
Sbjct: 211 CKYFLERKCIKGDQCKFDHD-AEIEKKKEMCKYYVQGYCTKGENCLYLH--SEYPCKFYH 267
Query: 536 AKGFCNRGDNCLFSH 550
C +GD+C FSH
Sbjct: 268 TGTKCYQGDHCNFSH 282
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 501 KSTKACCHFARNSCMKGDNCPFDHDL----SKYPCENFVAKGFCNRGDNCLFSHKLPP 554
K + C +F C+KGD C FDHD K C+ +V +G+C +G+NCL+ H P
Sbjct: 206 KGKQVCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYV-QGYCTKGENCLYLHSEYP 262
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens
GN=ZC3H8 PE=1 SV=2
Length = 291
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++L+ +C +GD+CKF HD + K + C + + C +G+NC + H+ +YPC+ +
Sbjct: 197 CKYFLERKCIKGDQCKFDHD-AEIEKKKEMCKFYVQGYCTRGENCLYLHN--EYPCKFYH 253
Query: 536 AKGFCNRGDNCLFSHKLPPKEQDPPTPST 564
C +G+ C FSH P TP T
Sbjct: 254 TGTKCYQGEYCKFSHA-------PLTPET 275
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 501 KSTKACCHFARNSCMKGDNCPFDHDL----SKYPCENFVAKGFCNRGDNCLFSHKLPP 554
K + C +F C+KGD C FDHD K C+ F +G+C RG+NCL+ H P
Sbjct: 192 KGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCK-FYVQGYCTRGENCLYLHNEYP 248
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 471 KTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGD-NCPFDHDLS- 527
K +YC +Y + GRC G++C + HD + C F R +C K D CPF H +S
Sbjct: 668 KRKEYCMYYNRFGRCNRGERCPYIHD----PEKVAVCTRFVRGTCKKTDGTCPFSHHVSK 723
Query: 528 -KYPCENFVAKGFCNRGDNCLFSH 550
K P ++ KG C+ NC +SH
Sbjct: 724 EKMPVCSYFLKGICS-NSNCPYSH 746
Score = 37.4 bits (85), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 506 CCHFAR-NSCMKGDNCPFDHDLSKYP-CENFVAKGFCNRGD-NCLFSHKL 552
C ++ R C +G+ CP+ HD K C FV +G C + D C FSH +
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDPEKVAVCTRFV-RGTCKKTDGTCPFSHHV 721
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFA-RNSCMKGDNCPFDHDLSK 528
+ + C +LKG C G KCK H T C FA R +C +G C H K
Sbjct: 751 RKAEVCSDFLKGYCPLGAKCKKKH--------TLLCPDFARRGACPRGAQCQLLHRTQK 801
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit
4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3
Length = 179
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 464 LP-QNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPF 522
LP Q + C+ + KG C++G C F HD + C H+ R C KGD+C F
Sbjct: 28 LPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHDR---GEKMVVCKHWLRGLCKKGDHCKF 84
Query: 523 DH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
H DL++ P F +K G C+ + C F H P K QD P
Sbjct: 85 LHQYDLTRMPECYFYSKFGDCSNKE-CSFLHVKPAFKSQDCP 125
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 28/103 (27%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTK-------------STKACCHFARNSCMKGDNCPF 522
C H+L+G C++GD CKF H LT+ S K C K +CP+
Sbjct: 68 CKHWLRGLCKKGDHCKFLHQ-YDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQDCPW 126
Query: 523 -------DHDLSKYP------CENFVAKGFCNRGDNCLFSHKL 552
D L KY C N++ GFC G C F+ K+
Sbjct: 127 YDQGFCKDGPLCKYRHVPRIMCLNYLV-GFCPEGPKCQFAQKI 168
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 28/119 (23%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYP---------------------CENFVAKGFCNRGDNCLFSH 550
KGD C F H D++K P C N++ GFC G +C F H
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNYLV-GFCPEGPSCKFMH 134
>sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=yth1 PE=3 SV=1
Length = 254
Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 23/108 (21%)
Query: 473 VKYCHHYLKGRCQEGDKCKFSHDTVP-LTKSTKA--------------CCHFARNSCMKG 517
V C Y +G C G C H T +T ST C HF + C KG
Sbjct: 44 VPVCKAYSEGHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKG 103
Query: 518 DNCPFDHD--LSKYP-CENFVAKGFCNRGDNCLFSH-----KLPPKEQ 557
C + H+ L + P C++F G+C GD+CL+ H +LPP E
Sbjct: 104 MKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCEH 151
Score = 51.2 bits (121), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDHDLSKY---PC 531
C H+LKG C++G KC++ H+ + C F+R+ C GD+C + H + PC
Sbjct: 92 CKHFLKGLCKKGMKCEYLHEYN--LRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPC 149
Query: 532 ENFVAKGFCNRGDNCLFSH---KLPPKEQDPPTPSTCTPELKPSPPLYASNLLKP 583
E++ +GFC G C H +L P P P + P ++ NL KP
Sbjct: 150 EHY-DQGFCPLGPLCAKRHVRRRLCPYYVAGFCPE--GPNCANAHPRWSENLPKP 201
>sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1
Length = 255
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 23/108 (21%)
Query: 473 VKYCHHYLKGRCQEGDKCKFSHDTVP-LTKSTKA--------------CCHFARNSCMKG 517
V C Y +G C G C H T +T ST C HF + C KG
Sbjct: 44 VPVCKAYSEGHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKG 103
Query: 518 DNCPFDHD--LSKYP-CENFVAKGFCNRGDNCLFSH-----KLPPKEQ 557
C + H+ L + P C++F G+C GD+CL+ H +LPP E
Sbjct: 104 LKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCEH 151
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDHDLSKY---PC 531
C H+LKG C++G KC++ H+ + C F+R+ C GD+C + H + PC
Sbjct: 92 CKHFLKGLCKKGLKCEYLHEYN--LRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPC 149
Query: 532 ENFVAKGFCNRGDNCLFSH 550
E++ +GFC G C H
Sbjct: 150 EHY-DRGFCPLGPLCAKRH 167
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus
norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLP-PKEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH--DLSK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos
taurus GN=CPSF4 PE=2 SV=1
Length = 243
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLP-PKEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH--DLSK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1
PE=3 SV=1
Length = 254
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 473 VKYCHHYLKGRCQEGDKCKFSHDTVP-LTKSTKA--------------CCHFARNSCMKG 517
V C Y +G C G C H T +T ST C HF + C KG
Sbjct: 44 VPVCKAYSEGHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKG 103
Query: 518 DNCPFDHD--LSKYP-CENFVAKGFCNRGDNCLFSH-----KLPPKE 556
C + H+ L + P C++F G+C GD+CL+ H +LPP E
Sbjct: 104 LKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
Score = 50.4 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDHDLSKY---PC 531
C H+LKG C++G KC++ H+ + C F+R+ C GD+C + H + PC
Sbjct: 92 CKHFLKGLCKKGLKCEYLHEYN--LRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPC 149
Query: 532 ENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSP---PLYASNLLKP 583
EN+ +GFC G C S + + + PE K P P ++ NL KP
Sbjct: 150 ENY-DQGFCELGPLC--SKRHVRRRLCKYYLAGFCPEGKACPDAHPRWSENLPKP 201
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKSACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLP-PKEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 35/123 (28%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTK---------------------------ST 503
KTV C H+L+G C++GD+C+F H+ +TK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPECYFYSKFGECSNKECPFLHIDPESKI 121
Query: 504 KACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSH---KLP-PKEQDP 559
K C + R C G C H + C N++ GFC G NC F H +LP + P
Sbjct: 122 KDCPWYDRGFCKHGPLCRHRHT-RRVICVNYLV-GFCIEGPNCKFMHPRFELPMGTAEQP 179
Query: 560 PTP 562
P P
Sbjct: 180 PLP 182
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKSACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLP-PKEQDPP 560
KGD C F H D++K P F +K G C+ + C F H P K +D P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKIKDCP 125
Score = 43.5 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH--DLSK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++LKG C + C +SH V +++ + C F + C G C H L C +F
Sbjct: 724 CSYFLKGICSNSN-CPYSH--VYVSRKAEVCSDFLKGYCPLGAKCKKKHTLL---CPDFA 777
Query: 536 AKGFCNRGDNCLFSHK 551
+G C RG C H+
Sbjct: 778 RRGICPRGSQCQLLHR 793
Score = 36.6 bits (83), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 501 KSTKACCHFAR-NSCMKGDNCPFDHDLSKYP-CENFVAKGFCNRGD-NCLFSHKL 552
K + C ++ R C +G+ CP+ HD K C FV +G C + D +C FSH +
Sbjct: 663 KKREYCMYYNRFGRCNRGECCPYIHDPEKVAVCTRFV-RGTCKKTDGSCPFSHHV 716
>sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=yth1 PE=3 SV=1
Length = 170
Score = 50.1 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 37/117 (31%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHF--ARNSCMKGDNCPFDH-DLSKY--- 529
C H+L+G C++G++C F H+ CHF R C G+ C + H D SK
Sbjct: 54 CKHWLRGLCKKGEQCDFLHE---YNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVGV 110
Query: 530 ------------------------PCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTP 562
PC ++A GFC G NC +H PK +PP P
Sbjct: 111 CAWYNMGFCPLGPICRGKHVRKPRPCPKYLA-GFCPLGPNCPDAH---PKHSEPPHP 163
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARN--SCMKGDNCPFDHDLSKYPCEN 533
C H+L+G C +G+ C F H K+ C F R+ C + D C + H N
Sbjct: 64 CRHWLRGLCMKGEACGFLHQ---FDKARMPVCRFFRDFGECREPD-CAYKHSYDDVKECN 119
Query: 534 FVAKGFCNRGDNCLFSH 550
GFC G NC + H
Sbjct: 120 MYKMGFCPNGPNCRYKH 136
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 507 CHFARN-SCMKGDNCPFDHDL-SKYPCENFVAKGFCNRGDNCLFSHKLP 553
C F RN +C G+NCPF H L ++ P + KG C G C SH LP
Sbjct: 47 CKFFRNGTCTAGENCPFSHSLETERPICKYFLKGNCKFGPKCALSHALP 95
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDL 526
C + G C G+ C FSH L C +F + +C G C H L
Sbjct: 47 CKFFRNGTCTAGENCPFSHS---LETERPICKYFLKGNCKFGPKCALSHAL 94
>sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio
GN=mkrn2 PE=2 SV=2
Length = 414
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C ++L G C+EG +C FSHD + +K + C ++ R +C GD C +DH
Sbjct: 8 CRYFLHGVCREGSRCLFSHD-LTTSKPSTICKYYQRGACAYGDRCRYDH 55
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 506 CCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPP 554
C +F C +G C F HDL+ C+ + +G C GD C + H PP
Sbjct: 8 CRYFLHGVCREGSRCLFSHDLTTSKPSTICK-YYQRGACAYGDRCRYDHIKPP 59
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTK------STKACCHFARNSCMKGDNCPFDHD--LS 527
C + G C G +C H + T ++ C H+ R C KG++C F H+ L
Sbjct: 43 CKAFQSGHCPNGTRCPERHVSDSKTSQPTGGLNSLVCKHWLRGLCKKGEHCEFLHEYNLR 102
Query: 528 KYP-CENFVAKGFCNRGDNCLFSHKLPPKEQDPPTP 562
K P C F+ G+C+ GD CL+ H + P+ + PP P
Sbjct: 103 KMPECNFFMRNGYCSNGDECLYLH-IDPQSRLPPCP 137
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 468 LKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
+ PK V C ++L G C+EG +C FSHD +K + C F R C G C +DH
Sbjct: 1 MSPKQVT-CRYFLHGVCREGSRCLFSHDLA-TSKPSTVCRFFLRGQCAYGTRCRYDH 55
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD S C +F R C+ GD C ++H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGDRCRYEH 108
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 506 CCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQD 558
C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K+++
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLKQEE 116
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 505 ACCHFARNSCMKGDNCPFDHD--LSKYP-CENFVAKGFCNRGDNCLFSHKLPPKEQDPPT 561
C H+ R C KG++C F H+ L K P C FV G+C+ GD CL+ H + P + PP
Sbjct: 98 VCKHWLRGLCKKGESCEFLHEYNLRKMPECNFFVRNGYCSNGDECLYLH-IDPLSRLPPC 156
Query: 562 P 562
P
Sbjct: 157 P 157
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD + C F + +C+ GD C F+H
Sbjct: 24 CRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGDRCRFEH 72
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 506 CCHFARNSCMKGDNCPFDHDLS-----KYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPP 560
C +F C +GDNC + HDL+ C+ F KG C GD C F H P K ++ P
Sbjct: 24 CRYFMHGLCKEGDNCRYSHDLTNSKPAAMICK-FFQKGNCVFGDRCRFEHCKPAKNEELP 82
Query: 561 TP 562
P
Sbjct: 83 AP 84
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD + C F + +C+ G+ C FDH
Sbjct: 24 CRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGERCRFDH 72
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 31/128 (24%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHD----TVP----LTKSTKA----------------- 505
K + C HYL+ C+ GD C+++HD T+P K K
Sbjct: 94 KKLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLYFHPRDRRVE 153
Query: 506 CCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTC 565
C + R C+ G NCP H + + C+ + A GFC G +C +H P PP S
Sbjct: 154 CPDYNRGFCVLGPNCPRKH-IRRRLCDAYAA-GFCPDGKDCKLAH---PSPNRPPAESYI 208
Query: 566 TPELKPSP 573
P + P P
Sbjct: 209 NP-IPPDP 215
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 31/128 (24%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHD----TVP----LTKSTKA----------------- 505
K + C HYL+ C+ GD C+++HD T+P K K
Sbjct: 94 KKLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLYFHPRDRRVE 153
Query: 506 CCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTC 565
C + R C+ G NCP H + + C+ + A GFC G +C +H P PP S
Sbjct: 154 CPDYNRGFCVLGPNCPRKH-IRRRLCDAYAA-GFCPDGKDCKLAH---PSPNRPPAESYI 208
Query: 566 TPELKPSP 573
P + P P
Sbjct: 209 NP-IPPDP 215
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD + C F + +C+ G+ C F+H
Sbjct: 24 CRYFMHGLCKEGDNCRYSHDLTSSKPAAMMCKFFQKGNCVFGERCRFEH 72
Score = 40.0 bits (92), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 496 TVPLTKSTK---ACCHFARNSCMKGDNCPFDHDL-SKYPCE---NFVAKGFCNRGDNCLF 548
T+P+T C +F C +GDNC + HDL S P F KG C G+ C F
Sbjct: 11 TLPVTGGWTKHVTCRYFMHGLCKEGDNCRYSHDLTSSKPAAMMCKFFQKGNCVFGERCRF 70
Query: 549 SHKLPPKEQDPPTPSTCTPELKPSP 573
H P K ++ P P P
Sbjct: 71 EHCKPTKSEEVSNPQMLLLSSTPPP 95
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHD 525
C +++ G C+EG C++SHD + ++S C +F R C GD C ++H+
Sbjct: 40 CRYFIHGVCKEGINCRYSHD-LATSRSAMICRYFQRGCCAYGDRCRYEHN 88
Score = 40.0 bits (92), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 506 CCHFARNSCMKGDNCPFDHDL----SKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPT 561
C +F C +G NC + HDL S C F +G C GD C + H P Q+ PT
Sbjct: 40 CRYFIHGVCKEGINCRYSHDLATSRSAMICRYF-QRGCCAYGDRCRYEHNKP--LQEDPT 96
Query: 562 PSTCT 566
TCT
Sbjct: 97 GDTCT 101
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFAR--NSCMKGDNCPFDHDLSKYPCEN 533
C H+L+G C +GD C F H K+ C F R C + D C + H N
Sbjct: 66 CRHWLRGLCMKGDACGFLHQ---FDKARMPICRFFRLYGECREQD-CVYKHTNEDIKECN 121
Query: 534 FVAKGFCNRGDNCLFSH 550
GFC G +C + H
Sbjct: 122 MYKLGFCPNGPDCRYRH 138
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 506 CCHFARNSCMKGDNCPFDHDLSKYP----CENFVAKGFCNRGDNCLFSHKLPPKEQD 558
C +F C +GDNC + HDLS P C+ F +G+C GD C + H P K+++
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYF-QRGYCVYGDRCRYEHSKPLKQEE 116
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTK--ACCHFARNSCMKGDNCPFDH 524
C +++ G C+EGD C++SHD L+ S C +F R C+ GD C ++H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHD---LSDSPYGVVCKYFQRGYCVYGDRCRYEH 108
>sp|O22243|C3H31_ARATH Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis
thaliana GN=At2g47680 PE=2 SV=2
Length = 1015
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 505 ACCHFARNSCMKGDNCPFDHDL--SKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTP 562
C +F C +G C F H L ++ C+ F + C G++CLFSH + + P
Sbjct: 732 VCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPP 791
Query: 563 STCTPE 568
C PE
Sbjct: 792 PQCLPE 797
>sp|Q6GLD9|MKRN2_XENTR Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus
tropicalis GN=mkrn2 PE=2 SV=1
Length = 418
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 25/170 (14%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
C ++L G C+EG +C FSHD +K + C + R C G C +DH PC V
Sbjct: 8 CRYFLHGVCREGGRCLFSHDLA-TSKPSTVCRFYQRGQCAYGARCRYDH---VKPCNGSV 63
Query: 536 AKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVD 595
PP+E P P TP L P+ P+ + +
Sbjct: 64 F---------------YPPQEMA-PAPLESTPPLLPT-----QEAAAPVTKSAPQRREKK 102
Query: 596 ALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLG 645
++ + ++E++ L+P A +S L S+LEA G
Sbjct: 103 SVVLRDRDLCGASVEKAHPDPALRPGCAADPPVSELEAKPHSYLEAICTG 152
>sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=YTH1 PE=3 SV=1
Length = 209
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDH--DLSKY-PC 531
C H+L+G C++ D C++ H+ + C +A+N C + C + H LSK PC
Sbjct: 68 CKHWLRGLCKKNDNCEYLHEYN--LRKMPECVFYAKNGFCTQSPECQYLHIDPLSKVPPC 125
Query: 532 ENFVAKGFCNRGDNCLFSH 550
E++ GFC +G C H
Sbjct: 126 EDY-EMGFCPKGSACEKRH 143
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C++G+ C++SHD + ++S C ++ R C GD C ++H
Sbjct: 57 CRYFMHGVCKKGNNCRYSHD-LSTSQSAMVCRYYQRGCCAYGDRCRYEH 104
Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 506 CCHFARNSCMKGDNCPFDHDL----SKYPCENFVAKGFCNRGDNCLFSHKLPPKEQD 558
C +F C KG+NC + HDL S C + +G C GD C + H P K ++
Sbjct: 57 CRYFMHGVCKKGNNCRYSHDLSTSQSAMVC-RYYQRGCCAYGDRCRYEHTKPLKREE 112
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo
sapiens GN=CPSF4 PE=1 SV=1
Length = 269
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 455 RQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSC 514
+QLG + L P + C +LK C +G C F H + + T C H+ R C
Sbjct: 21 QQLGAQPLPFP-GMDKSGAAVCEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLC 76
Query: 515 MKGDNCPFDH--DLSKYP-CENFVAKGFCNRGDNCLFSHKLP 553
KGD C F H D++K P C + G C+ + C F H P
Sbjct: 77 KKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDP 117
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH--DLSK 528
KTV C H+L+G C++GD+C+F H+ +TK + C +++ CPF H SK
Sbjct: 64 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLHIDPESK 120
Query: 529 YPCENFVAKGFCNRGDNCLFSH 550
+ +GFC G C H
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRH 142
>sp|Q06102|YTH1_YEAST mRNA 3'-end-processing protein YTH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YTH1 PE=1 SV=1
Length = 208
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDH--DLSKYP-C 531
C H+L+G C++ D+C++ H+ + C F++N C + +C + H SK P C
Sbjct: 67 CRHWLRGLCKKNDQCEYLHEYN--LRKMPECVFFSKNGYCTQSPDCQYLHIDPASKIPKC 124
Query: 532 ENFVAKGFCNRGDNCLFSH 550
EN+ GFC G +C H
Sbjct: 125 ENY-EMGFCPLGSSCPRRH 142
Score = 41.2 bits (95), Expect = 0.036, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 484 CQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHD--LSKYP-CENFVAKGFC 540
C G C H +P+ ++ C H+ R C K D C + H+ L K P C F G+C
Sbjct: 46 CPRGPLCPKKH-VLPIFQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYC 104
Query: 541 NRGDNCLFSHKLP 553
+ +C + H P
Sbjct: 105 TQSPDCQYLHIDP 117
>sp|Q5NU13|MKRN2_TAKRU Probable E3 ubiquitin-protein ligase makorin-2 OS=Takifugu rubripes
GN=mkrn2 PE=2 SV=1
Length = 402
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C ++L G C+EG+ C+FSHD +K + C + R +C G+ C +DH
Sbjct: 8 CRYFLHGVCREGNHCQFSHDPSS-SKPSTICKFYQRGTCAYGERCRYDH 55
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 506 CCHFARNSCMKGDNCPFDHDLSKYPCEN-----FVAKGFCNRGDNCLFSHKLPPKEQDPP 560
C +F C +G+NC + HDLS C+ F KG C GD C + H P K+ +
Sbjct: 24 CRYFMHGLCKEGENCRYSHDLSS--CKQTMICKFFQKGCCAFGDRCRYEHTKPSKQDE-- 79
Query: 561 TPSTCTPELKPSPPLYASNL 580
P KPS PL A+ L
Sbjct: 80 -----VPSSKPSMPLTAAPL 94
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C +++ G C+EG+ C++SHD + K T C F + C GD C ++H
Sbjct: 24 CRYFMHGLCKEGENCRYSHD-LSSCKQTMICKFFQKGCCAFGDRCRYEH 71
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 22/80 (27%)
Query: 466 QNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLT---------KSTK-----------A 505
QN + + V C + +G C GD CKFSHD +S+K
Sbjct: 128 QNREARGV--CRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGV 185
Query: 506 CCHFARNSCMKGDNCPFDHD 525
C F R C +GD+C F HD
Sbjct: 186 CRAFQRGECTRGDSCKFSHD 205
>sp|Q0U9D6|DUS3_PHANO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=DUS3 PE=3 SV=2
Length = 739
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 493 SHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKY--------------PCENFVAKG 538
SHD +PL + F+ C GD C F+HDL KY C + +G
Sbjct: 141 SHDKLPLCGTRALSNEFSAPECRFGDKCKFEHDLRKYLKEGRREDLTTFDGQCPIYEVRG 200
Query: 539 FCNRGDNCLF 548
+C+ G C F
Sbjct: 201 YCHLGWKCRF 210
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus
GN=Zc3h15 PE=2 SV=1
Length = 426
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 31/122 (25%)
Query: 463 KLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHF-ARNSCMKGD--- 518
K+ + PK+V C + +G+C +GDKCKFSHD K K + AR+ ++ D
Sbjct: 93 KISKGADPKSV-VCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMD 151
Query: 519 -----------NCPFDHDLSKYPCENFVAKGFCNR---------------GDNCLFSHKL 552
N K P V + F GDNC++ H L
Sbjct: 152 NWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHAL 211
Query: 553 PP 554
PP
Sbjct: 212 PP 213
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus
GN=Zc3h15 PE=1 SV=2
Length = 426
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 31/122 (25%)
Query: 463 KLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHF-ARNSCMKGD--- 518
K+ + PK+V C + +G+C +GDKCKFSHD K K + AR+ ++ D
Sbjct: 93 KISKGADPKSV-VCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMD 151
Query: 519 -----------NCPFDHDLSKYPCENFVAKGFCNR---------------GDNCLFSHKL 552
N K P V + F GDNC++ H L
Sbjct: 152 NWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHAL 211
Query: 553 PP 554
PP
Sbjct: 212 PP 213
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 463 KLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPF 522
KL + P+ + C +YL+G C + C + H V + C F + C +GD C
Sbjct: 288 KLTHKVIPERMPDCSYYLQGLCN-NEACPYRH--VHVNPIAPICDGFLKGYCSEGDECRK 344
Query: 523 DHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQ 557
H Y C F A G C++G C H PK Q
Sbjct: 345 KHS---YNCPVFEATGSCSQGLKCKLHH---PKNQ 373
Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 463 KLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPF 522
K P P + C +L G C + CK +H +P + C ++ + C + CP+
Sbjct: 261 KCPYVHDPSKIAVCTKFLNGLCANAN-CKLTHKVIP--ERMPDCSYYLQGLC-NNEACPY 316
Query: 523 DHDLSKYP----CENFVAKGFCNRGDNCLFSH 550
H + P C+ F+ KG+C+ GD C H
Sbjct: 317 RH-VHVNPIAPICDGFL-KGYCSEGDECRKKH 346
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 499 LTKSTKACCHFAR-NSCMKGDN-CPFDHDLSKYP-CENFVAKGFCNRGDNCLFSHKLPP 554
L K K C F R C K D CP+ HD SK C F+ G C NC +HK+ P
Sbjct: 239 LAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFL-NGLCANA-NCKLTHKVIP 295
>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
quinqueradiata GN=mkrn2 PE=2 SV=1
Length = 423
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C ++L G C+EG +C FSHD + +K + C + R C G+ C +DH
Sbjct: 8 CRYFLHGVCREGSRCLFSHD-LNNSKPSTICKFYQRGVCAYGERCRYDH 55
>sp|Q5H7N8|ZC3HF_CHICK Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus
GN=ZC3H15 PE=1 SV=1
Length = 429
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 31/122 (25%)
Query: 463 KLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHF-ARNSCMKGD--- 518
K+ + PK+V C + +G+C +GDKCKFSHD K K + AR+ ++ D
Sbjct: 94 KISKGADPKSV-VCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYIDARDEDLEKDTMD 152
Query: 519 -----------NCPFDHDLSKYPCENFVAKGFCNR---------------GDNCLFSHKL 552
N K P V K F + GDNC++ H L
Sbjct: 153 NWDEKKLEEVVNKKHGEAEKKKPKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHAL 212
Query: 553 PP 554
PP
Sbjct: 213 PP 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 323,611,104
Number of Sequences: 539616
Number of extensions: 14390491
Number of successful extensions: 61678
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 715
Number of HSP's that attempted gapping in prelim test: 56793
Number of HSP's gapped (non-prelim): 4313
length of query: 879
length of database: 191,569,459
effective HSP length: 126
effective length of query: 753
effective length of database: 123,577,843
effective search space: 93054115779
effective search space used: 93054115779
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)