BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002805
(879 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 499 LTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSH 550
L K + C + C + +NCP+ H +PC+ + G C GD+C+FSH
Sbjct: 9 LPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYHTTGNCINGDDCMFSH 58
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 470 PKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHD 525
PK + C Y+ G C + C + H P + +C+ GD+C F HD
Sbjct: 10 PKKRELCKFYITGFCARAENCPYMHGDFPCKL------YHTTGNCINGDDCMFSHD 59
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
KTV C H+L+G C++GD+C+F H+ +TK ++ C +++ CPF H
Sbjct: 15 KTV-VCKHWLRGLCKKGDQCEFLHE-YDMTKMSE-CYFYSKFGECSNKECPFLH 65
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 501 KSTKACCHFARNSCMKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLP 553
+ T C H+ R C KGD C F H D++K F +K G C+ + C F H P
Sbjct: 14 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKE-CPFLHIDP 68
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
C H+L+G C++GD+C+F H+ +TK + C +++ CPF H
Sbjct: 13 CKHWLRGLCKKGDQCEFLHE-YDMTKMPE-CYFYSKFGECSNKECPFLH 59
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 501 KSTKACCHFARNSCMKGDNCPFDH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLP-PKE 556
+ T C H+ R C KGD C F H D++K P F +K G C+ + C F H P K
Sbjct: 8 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE-CPFLHIDPESKI 66
Query: 557 QDPP 560
+D P
Sbjct: 67 KDCP 70
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 458 GVRRLKL-PQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTV 497
GVR L L P + K++K C +L+G+C+ + C+FSH V
Sbjct: 63 GVRVLYLYPTH---KSLKPCPFFLEGKCRFKENCRFSHGQV 100
>pdb|2IDL|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Streptococcus Pneumoniae
pdb|2IDL|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Streptococcus Pneumoniae
Length = 117
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 243 TNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMI 278
+N +I A RAED E+ EI+GH E E +D++
Sbjct: 1 SNAMIQAVFERAEDGELRSAEITGHAESGEYGLDVV 36
>pdb|2D9M|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 3 In
Zinc Finger Ccch-Type Domain Containing 7a
Length = 69
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 476 CHHYLKGRCQEGDKCKFSHDTVPL 499
C Y+ G C EG+ CKF+H L
Sbjct: 23 CDRYMNGTCPEGNSCKFAHGNAEL 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,341,494
Number of Sequences: 62578
Number of extensions: 989938
Number of successful extensions: 1688
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1663
Number of HSP's gapped (non-prelim): 30
length of query: 879
length of database: 14,973,337
effective HSP length: 107
effective length of query: 772
effective length of database: 8,277,491
effective search space: 6390223052
effective search space used: 6390223052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)