Citrus Sinensis ID: 002806

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------88
MGNGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSPAITPSNSERFTVDSSTLDSETLSGSFRHDSLDDPSGLHKPKSFPETTFKTISGASVSANVSTARTGNQSALFASDVQEPAASFESTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIERGVMSGPLDASDKSNFSAPLARGRRRPRLHRLMRSVSGPMRNTLSRTFSKHTMGSGWMERFFLHPVTRLAWQVKEAKYRSEAQRNCLEGGPSEGEYGNSCNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKSPTDHPELGHPKCQNAGISVEGTKVDQPELCLNKVSYCNLKESCNSSGMSREQSFTCEIVEESGEVTGCTRNGNITGRGRKSMRLYELLQIESWDGQGSTLISDIGPERKGSSDCQACQDTVGSSENLKGDNSVHRGEDPTTSGGDGRVGLESNQDSMDSLSVSVQRQGTRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG
ccccccccEEcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHcccccccccccEEcccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccEEEEcccccHHHHccccccccccccccccccHHHccccHHHHHHHHHccccccccccccccccEEcccccccEEcccccEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccccccEEEEccEEEEEccccccEEEEEcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHccccccccccccccEEEEEEEcccccccccc
cccccEEEEEcccccccccccEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEccccccccHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccHcccccccccccccccccccEEEccccccccccccccccEEEEccccccccccccccccccccEEEHHHccccccccccccEEEccccccccccHcccccccccccHHcccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEEEEcccEEEEEcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHccccccccEEccccccccccccccEEEEEEEcccccccHHHHHHHHHHHccccccEEEEcEEEEEEEEEEcHccHHcccccHcHHHHHHccccccccccEEEEccEEEEEEcccccEEEEEEcccHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccEEEEEEEEccccccccc
mgngtsrvvgcfvpfngksgvdleflepldeglghsfcyvrpsifdspaitpsnserftvdsstldsetlsgsfrhdslddpsglhkpksfpettfktisgasvsanvstartgnqsalfasdvqepaasfestasfaaiplqpvprgsgplngfmsgplergfasgpldrgggfmsgpiergvmsgpldasdksnfsaplargrrrprlhrlmrsvsgpmrntlsrtfskhtmgsgwmerfflhPVTRLAWQVKEAKYRSEAQRncleggpsegeygnscnlqwahgkagedRVHVVLSEEQGWLFIgiydgfsgpdapdfLMSHLYRAIDKELEGLLwdyedksptdhpelghpkcqnagisvegtkvdqpelclnkvsycnlkescnssgmsreqSFTCEIVeesgevtgctrngnitgrgrkSMRLYELLQIEswdgqgstlisdigperkgssdcqacqdtvgssenlkgdnsvhrgedpttsggdgrvglesnqdsmDSLSVSVQRQGTRKSLISSKIRKMYRKQKSLrkklfpwsydwhreepcidermvessgpirkcksgiiDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAIlaqerpndrhpnpsflkddsrhknrsrESLVRMELdriseespmhnqncqvnmmnknrdiSICRLKMRAVQlstdhstsVEEEIIRIkaehpddsqavfNDRVKGQLKVTRAfgagflkkptcNEALLEMFRVdyvgnapyvscipsivhhrlsssdrflvlssdglyqyfsnEEVVAHVTWFmenvpegdpAQYLIAELLFRAAKKNgmdfhelldiphgdrrkyhdDVSVMVVSLEgriwrssg
MGNGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFdspaitpsnserftvdsstldsETLSGSFRHDSLDDPSGLHKPKSFPETTFKTISGASVSANVSTARTGNQSALFASDVQEPAASFESTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIERGVMSgpldasdksnfsaplargrrrprlhrlmrsvsgpmrntlsrtfsKHTMGSGWMERFFLHPVTRLAWQVKEAKYRSEAQRNCLEGGPSEGEYGNSCNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKSPTDHPELGHPKCQNAGISVEGTKVDQPELCLNKVSYCNLKESCNSSGMSREQSFTCeiveesgevtgctrngnitgrgrkSMRLYELLQIESWDGQGSTLISDIGPERKGSSDCQACQDTVgssenlkgdnsvhrgedpttsggdgrVGLESNQDSmdslsvsvqrqgtrkslisskirkmyrkqkslrkklfpwsydwhreepcidermvessgpiRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILaqerpndrhpnpsflkddsrhknrsreSLVRMeldriseespmhnqncqvnMMNKNRDISICRLKMRAVqlstdhstsVEEEIIRIkaehpddsqavFNDRVKGQLKVTrafgagflkkPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLdiphgdrrkyhdDVSVMVVSlegriwrssg
MGNGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSPAITPSNSERFTVDSSTLDSETLSGSFRHDSLDDPSGLHKPKSFPETTFKTISGASVSANVSTARTGNQSALFASDVQEPaasfestasfaaIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIERGVMSGPLDASDKSNFSAPlargrrrprlhrlmrSVSGPMRNTLSRTFSKHTMGSGWMERFFLHPVTRLAWQVKEAKYRSEAQRNCLEGGPSEGEYGNSCNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKSPTDHPELGHPKCQNAGISVEGTKVDQPELCLNKVSYCNLKESCNSSGMSREQSFTCEIVEESGEVTGCTRNGNITGRGRKSMRLYELLQIESWDGQGSTLISDIGPERKGSSDCQACQDTVGSSENLKGDNSVHRGEDPTTSGGDGRVGLESNQDSMDSLSVSVQRQGTRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG
******RVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFD*****************************************************************************************************************************************************************************************HTMGSGWMERFFLHPVTRLAWQVKEAKYR****************YGNSCNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYE*******************I*VEGTKVDQPELCLNKVSYCNLKE************FTCEIVEESGEVTGCTRNGNITGRGRKSMRLYELLQIESWDGQGSTL***************************************************************************************LRKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAI*********************************************************RDISICRLKMRAVQL***********IIRI*********AVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIW****
***GTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSP********************************************ETTFKTISGASVSANVSTARTGNQSALFASDVQ**********SFAAIPLQP**************************************************************************************************************************************************GEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLW****************************************************************************************************************************************************************************************************KLFPWSYDWHREEPCIDERMV*********************AMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPS**************SLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFME*********YLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLE*RI*****
MGNGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSPAITPSNSERFTVDSSTLDSETLSGSFRHDSLDDPSGLHKPKSFPETTFKTISGASVSANVSTARTGNQSALFASDVQEPAASFESTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIERGVMSGPLDASDKSNFSAPLARGRRRPRLHRLMRSVSGPMRNTLSRTFSKHTMGSGWMERFFLHPVTRLAWQVKEAKYRSEAQRNCLEGGPSEGEYGNSCNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKSPTDHPELGHPKCQNAGISVEGTKVDQPELCLNKVSYCNLKES***********FTCEIVEESGEVTGCTRNGNITGRGRKSMRLYELLQIESWDGQGSTLISDIGP***********QDTVGSSENLKGDNSVHRGEDPTTSGGDGRVGLESN******************SLISSKIRKMYRKQKSLRKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLK***********SLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQ*********EEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG
**NGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSP********************************************ETTFKTISGASVSANVSTARTGNQSALFASDVQEPAASFESTASFAAIPLQPVPRGSGPL*GFMSGPLERGFASGPLDRGGGFMSGPIERGVMS*********************P*LHRLMRSVSGPMRNTLSRTFSKHTMGSGWMERFFLHPVTRLAWQV************************NSCNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYED*****************************************K*************FTC***EE**EVTGCTRNGNITGRGRKSMRLYELLQIESW****STLI**********************************************V****N*DS***********GTRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREE**********************DHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEG*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGNGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSPAITPSNSERFTVDSSTLDSETLSGSFRHDSLDDPSGLHKPKSFPETTFKTISGASVSANVSTARTGNQSALFASDVQEPAASFESTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIERGVMSGPLDASDKSNFSAPLARGRRRPRLHRLMRSVSGPMRNTLSRTFSKHTMGSGWMERFFLHPVTRLAWQVKEAKYRSEAQRNCLEGGPSEGEYGNSCNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKSPTDHPELGHPKCQNAGISVEGTKVDQPELCLNKVSYCNLKESCNSSGMSREQSFTCEIVEESGEVTGCTRNGNITGRGRKSMRLYELLQIESWDGQGSTLISDIGPERKGSSDCQACQDTVGSSENLKGDNSVHRGEDPTTSGGDGRVGLESNQDSMDSLSVSVQRQGTRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query879 2.2.26 [Sep-21-2011]
Q8RWN7856 Protein phosphatase 2C 32 yes no 0.941 0.967 0.674 0.0
Q9LQN6662 Probable protein phosphat no no 0.354 0.471 0.553 1e-102
O82302783 Protein phosphatase 2C 29 no no 0.399 0.448 0.517 1e-101
Q84T94639 Protein phosphatase 2C 35 no no 0.335 0.461 0.537 6e-98
Q9SR24650 Probable protein phosphat no no 0.310 0.42 0.601 2e-97
Q6ZGY0596 Probable protein phosphat no no 0.324 0.478 0.578 2e-97
Q9LZ86674 Probable protein phosphat no no 0.324 0.422 0.565 1e-96
Q9ZV25654 Probable protein phosphat no no 0.317 0.426 0.572 6e-96
Q10NB9631 Probable protein phosphat no no 0.326 0.454 0.509 1e-81
A3AZ89593 Putative protein phosphat no no 0.326 0.483 0.514 1e-80
>sp|Q8RWN7|P2C32_ARATH Protein phosphatase 2C 32 OS=Arabidopsis thaliana GN=POL PE=1 SV=2 Back     alignment and function desciption
 Score = 1182 bits (3057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/895 (67%), Positives = 703/895 (78%), Gaps = 67/895 (7%)

Query: 1   MGNGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSPAITPSNSERFTV 60
           MGNGTSRVVGCFVP N K+GVDLEFLEPLDEGLGHSFCYVRPSIF+SP ITPSNSERFT+
Sbjct: 1   MGNGTSRVVGCFVPSNDKNGVDLEFLEPLDEGLGHSFCYVRPSIFESPDITPSNSERFTI 60

Query: 61  DSSTLDSETLSGSFRHDSLDDPSGL--HKPKSFPETTFKTISGASVSANVSTARTGNQSA 118
           DSST+DSETL+GSFR+D +DDPS L  H  K   ETTFK ISGASVSANVSTARTGNQ A
Sbjct: 61  DSSTIDSETLTGSFRNDIVDDPSFLNRHNSKGLAETTFKAISGASVSANVSTARTGNQMA 120

Query: 119 LFASDVQEPAASFESTASFAAIPLQPVPRG-SGPLNGFMSGPLERGFASGPLDRGGGFMS 177
           L +SDV EPAASFEST+SFA+IPLQP+PRG SGPLNGFMSGPLERGFASGPLDR  GFMS
Sbjct: 121 LCSSDVLEPAASFESTSSFASIPLQPLPRGGSGPLNGFMSGPLERGFASGPLDRNNGFMS 180

Query: 178 GPIERGVMSGPLDASDKSNFSAPLARGRRRPRLHRLMRSVSGPMRNTLSRTFSKHTMGSG 237
           GPIE+GVMSGPLD SD+SNFSAPL+  R++PR  R MRSVSGPM++TL+RTFS+ + G  
Sbjct: 181 GPIEKGVMSGPLDVSDRSNFSAPLSFRRKKPRFQRFMRSVSGPMKSTLARTFSRRSGGLS 240

Query: 238 WMERFFLHPVTRLAWQV-KEAKYRSEAQRNCLEGGPSEGEYGNSCNLQWAHGKAGEDRVH 296
           WM RFFLHP TR++W V K+ K   E   +CLE         ++ NLQWAHGKAGEDRVH
Sbjct: 241 WMHRFFLHPETRVSWAVGKDGKLHGEDPESCLE---------SNRNLQWAHGKAGEDRVH 291

Query: 297 VVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKS------PTDH 350
           VVLSEEQGWLFIGIYDGFSGPDAPDF+MSHLY+AIDKELEGLLWDYE+ S      P   
Sbjct: 292 VVLSEEQGWLFIGIYDGFSGPDAPDFVMSHLYKAIDKELEGLLWDYEEPSEDNQLQPDQE 351

Query: 351 PELGHPKCQNAGISVEGTK---VDQPELCLNKVSYCNLKESCNSSGMSREQSFTCEIVEE 407
           P      C    IS + +K    +  E+ ++ +S     ++  + G              
Sbjct: 352 PPTEENMCDPESISEQHSKSVVAESEEVMIDDISSLGNTDTQIADGPP------------ 399

Query: 408 SGEVTGCTRNGNITGRGRKSMRLYELLQIESWDGQGSTLISDIGPERKGSSDCQACQDTV 467
                     G+  G G+KSMRLYELLQ+E W+G+      +IG +R G           
Sbjct: 400 ----------GDSAGPGKKSMRLYELLQLEQWEGE------EIGLKRYGG---------- 433

Query: 468 GSSENLKGDNSVHRGEDPTTSGGD-GRVGLESNQDSMDSLSVSVQRQGTRKSLISSKIRK 526
               N+  +N  ++ E+P+TSGG  G     +++ ++D +  S QR GT+KS ISSKIR+
Sbjct: 434 ----NVALNNMTNQVENPSTSGGGAGNDPCTTDRSALDGIPNSGQRHGTKKSQISSKIRR 489

Query: 527 MYRKQKSLRKKLFPWSYDWHREEP-CIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALE 585
           MY+KQKSLRKKLFPWSYDWHREE  C++E++VESSGPIR+  SG +DHDAVLRAMA+ALE
Sbjct: 490 MYQKQKSLRKKLFPWSYDWHREEGICVEEKIVESSGPIRRRWSGTVDHDAVLRAMARALE 549

Query: 586 STEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPN 645
           STEEAYM+MVEK+LD NPELALMGSCVLVMLMKDQDVYVMN+GDSRAILAQER +DRH N
Sbjct: 550 STEEAYMDMVEKSLDINPELALMGSCVLVMLMKDQDVYVMNVGDSRAILAQERLHDRHSN 609

Query: 646 PSFLKDDS-RHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQ 704
           P F  D+   HK+RSRESLVR+ELDRISEESP+HNQ   +++ NKNRD++  RLKMRAVQ
Sbjct: 610 PGFGNDEGIGHKSRSRESLVRIELDRISEESPIHNQATPISVSNKNRDVTSYRLKMRAVQ 669

Query: 705 LSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMF 764
           LS+DHSTSVEEEI RI++EHP+D Q++  DRVKGQLKVTRAFGAGFLKKP  NEALLEMF
Sbjct: 670 LSSDHSTSVEEEIWRIRSEHPEDDQSILKDRVKGQLKVTRAFGAGFLKKPNFNEALLEMF 729

Query: 765 RVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGD 824
           +V+Y+G  PY++C P  VHHRL+SSDRF+VLSSDGLY+YFSNEEVVAHVTWF+ENVPEGD
Sbjct: 730 QVEYIGTDPYITCEPCTVHHRLTSSDRFMVLSSDGLYEYFSNEEVVAHVTWFIENVPEGD 789

Query: 825 PAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG 879
           PAQYLIAELL RAA KNGM+FH+LLDIP GDRRKYHDDVSVMVVSLEGRIWRSSG
Sbjct: 790 PAQYLIAELLSRAATKNGMEFHDLLDIPQGDRRKYHDDVSVMVVSLEGRIWRSSG 844
Involved in the regulation of pedicel length and of CLAVATA pathways controlling stem cell identity at shoot and flower meristems.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q9LQN6|P2C04_ARATH Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=1 SV=1 Back     alignment and function description
>sp|O82302|P2C29_ARATH Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2 Back     alignment and function description
>sp|Q84T94|P2C35_ORYSJ Protein phosphatase 2C 35 OS=Oryza sativa subsp. japonica GN=XB15 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR24|P2C36_ARATH Probable protein phosphatase 2C 36 OS=Arabidopsis thaliana GN=PLL3 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZGY0|P2C26_ORYSJ Probable protein phosphatase 2C 26 OS=Oryza sativa subsp. japonica GN=Os02g0690500 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZ86|P2C66_ARATH Probable protein phosphatase 2C 66 OS=Arabidopsis thaliana GN=PLL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZV25|P2C23_ARATH Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1 Back     alignment and function description
>sp|Q10NB9|P2C31_ORYSJ Probable protein phosphatase 2C 31 OS=Oryza sativa subsp. japonica GN=Os03g0275100 PE=2 SV=1 Back     alignment and function description
>sp|A3AZ89|P2C46_ORYSJ Putative protein phosphatase 2C 46 OS=Oryza sativa subsp. japonica GN=Os05g0111800 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query879
225437734910 PREDICTED: protein phosphatase 2C 32-lik 0.997 0.963 0.773 0.0
255548189907 protein phosphatase 2c, putative [Ricinu 0.994 0.963 0.774 0.0
224068295882 predicted protein [Populus trichocarpa] 0.982 0.979 0.782 0.0
147855258871 hypothetical protein VITISV_031357 [Viti 0.968 0.977 0.763 0.0
224130784854 predicted protein [Populus trichocarpa] 0.968 0.996 0.778 0.0
356572864887 PREDICTED: protein phosphatase 2C 32-lik 0.978 0.969 0.731 0.0
356505703849 PREDICTED: protein phosphatase 2C 32-lik 0.959 0.992 0.744 0.0
30690550856 membrane associated protein phosphatase 0.941 0.967 0.674 0.0
20260146856 unknown protein [Arabidopsis thaliana] 0.941 0.967 0.673 0.0
297828421857 hypothetical protein ARALYDRAFT_904163 [ 0.937 0.961 0.672 0.0
>gi|225437734|ref|XP_002280642.1| PREDICTED: protein phosphatase 2C 32-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1427 bits (3693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/912 (77%), Positives = 772/912 (84%), Gaps = 35/912 (3%)

Query: 1   MGNGTSRVVGCFVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFDSPAITPSNSERFTV 60
           MGN TSRVVGCFVPFNGK GVDL+ LEPLDEGLGHSFCYVRP I DSPAITPSNSERFTV
Sbjct: 1   MGNSTSRVVGCFVPFNGKGGVDLDLLEPLDEGLGHSFCYVRPMILDSPAITPSNSERFTV 60

Query: 61  DSSTLDSETLSGSFRHDSLDDPSGLHKP-KSFPETTFKTISGASVSANVSTARTGNQSAL 119
           DSSTLDSETLSGSFRH+++DDPS +H+P K FPETTFK ISGASVSANVSTARTGN +AL
Sbjct: 61  DSSTLDSETLSGSFRHENIDDPSAVHRPNKCFPETTFKAISGASVSANVSTARTGNSNAL 120

Query: 120 FASDVQEPAASFESTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGP 179
           F SD QEPAASFEST+SFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPL+RGGGFMSGP
Sbjct: 121 FTSDAQEPAASFESTSSFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLERGGGFMSGP 180

Query: 180 IERGVMSGPLDASDKSNFSAPLARGRRRPRLHRLMRSVSGPMRNTLSRTFSKHTMGSGWM 239
           IE+GVMSGPLDA+DKSNFSAPLA GRRRP L RLMRSVSGPM++TLSRTFS+H++GS WM
Sbjct: 181 IEKGVMSGPLDATDKSNFSAPLAHGRRRPGLQRLMRSVSGPMKSTLSRTFSRHSIGSSWM 240

Query: 240 ERFFLHPVTRLAWQVKEAKYRSEAQRNCLEGGPSEGEYGNSCNLQWAHGKAGEDRVHVVL 299
           +RFFLHPVT+ AW  +E K+R EA RNCL+ GPSEGEY  + NLQWAHGKAGEDRVHVVL
Sbjct: 241 QRFFLHPVTQFAWHPREPKFRPEAPRNCLDVGPSEGEYRKTHNLQWAHGKAGEDRVHVVL 300

Query: 300 SEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKSPTDHPELGHPKCQ 359
           SEEQGWLFIGIYDGFSGPDAPDFLMSHLY+AIDKELEGLLWDYE+KS  D   L  P  +
Sbjct: 301 SEEQGWLFIGIYDGFSGPDAPDFLMSHLYKAIDKELEGLLWDYEEKSVNDLLNLELPMNR 360

Query: 360 NAGISVEGTKVDQPELCLNKVSYCNLKESCNSSGMSREQSFTCEIVEESGEVTG------ 413
           +A +  E  K + P   LN+V    L+ESCN  G  R+    CEIVEE   V G      
Sbjct: 361 DATVDSECGKDNHPISQLNEVISGTLEESCNP-GTIRDHCSNCEIVEEKDGVRGVLELQS 419

Query: 414 -CTRNG------------NITGRGRKSMRLYELLQIESWDGQGSTLISDIGPERKGSSDC 460
            C + G            N+TG+GRKS RLYELLQ+ESWDG+ S  +S+ G +R+GS D 
Sbjct: 420 SCGKPGVLGVESIAAPTANLTGQGRKSKRLYELLQMESWDGESSLSVSEGGNQRRGSWDW 479

Query: 461 QACQDTVGSSENL-------------KGDNSVHRGEDPTTSGGDGRVGLESNQDSMDSLS 507
           Q   D + S   L             KGD+S    EDPTTSG +G + +ESN   +  LS
Sbjct: 480 QPSSDVLHSRGILQEEQLRSCSVTSTKGDSSSQYCEDPTTSGENGGIRMESNS-VLAPLS 538

Query: 508 VSVQRQGTRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREEPCIDERMVESSGPIRKCK 567
           VS QRQG RKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREE C+D+RM E+SGP+R+CK
Sbjct: 539 VSEQRQGMRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREETCVDDRMAETSGPVRRCK 598

Query: 568 SGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNL 627
           SG+IDHDAVLRAMA+ALE+TEEAYMEMVEKALD NPELALMGSCVLVMLMKDQDVYVMNL
Sbjct: 599 SGVIDHDAVLRAMARALETTEEAYMEMVEKALDKNPELALMGSCVLVMLMKDQDVYVMNL 658

Query: 628 GDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMM 687
           GDSR ILAQERPNDRHPNP+  KDD RH+NRSRESLVRMELDRISEESPMHNQNCQVN  
Sbjct: 659 GDSRVILAQERPNDRHPNPNLAKDDVRHRNRSRESLVRMELDRISEESPMHNQNCQVNKA 718

Query: 688 NKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFG 747
           NKNR+IS CRLKMRAVQLSTDHSTS+EEE++RIKAEH DD+QA+ NDRVKGQLKVTRAFG
Sbjct: 719 NKNREISFCRLKMRAVQLSTDHSTSIEEEVLRIKAEHVDDNQAILNDRVKGQLKVTRAFG 778

Query: 748 AGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNE 807
           AGFLK+P CNEALLEMF++DYVG  PYVSCIPS++HHRLSSSDRFLVLSSDGLYQYFSNE
Sbjct: 779 AGFLKEPKCNEALLEMFQIDYVGTTPYVSCIPSVLHHRLSSSDRFLVLSSDGLYQYFSNE 838

Query: 808 EVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMV 867
           EVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMV
Sbjct: 839 EVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMV 898

Query: 868 VSLEGRIWRSSG 879
           VSLEGRIWRSSG
Sbjct: 899 VSLEGRIWRSSG 910

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548189|ref|XP_002515151.1| protein phosphatase 2c, putative [Ricinus communis] gi|223545631|gb|EEF47135.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068295|ref|XP_002302697.1| predicted protein [Populus trichocarpa] gi|222844423|gb|EEE81970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147855258|emb|CAN83867.1| hypothetical protein VITISV_031357 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130784|ref|XP_002320925.1| predicted protein [Populus trichocarpa] gi|222861698|gb|EEE99240.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356572864|ref|XP_003554585.1| PREDICTED: protein phosphatase 2C 32-like [Glycine max] Back     alignment and taxonomy information
>gi|356505703|ref|XP_003521629.1| PREDICTED: protein phosphatase 2C 32-like [Glycine max] Back     alignment and taxonomy information
>gi|30690550|ref|NP_850463.1| membrane associated protein phosphatase 2C [Arabidopsis thaliana] gi|30690552|ref|NP_850464.1| membrane associated protein phosphatase 2C [Arabidopsis thaliana] gi|332278134|sp|Q8RWN7.2|P2C32_ARATH RecName: Full=Protein phosphatase 2C 32; Short=AtPP2C32; AltName: Full=Protein POLTERGEIST; AltName: Full=Protein phosphatase 2C POL; Short=PP2C POL gi|330255678|gb|AEC10772.1| membrane associated protein phosphatase 2C [Arabidopsis thaliana] gi|330255679|gb|AEC10773.1| membrane associated protein phosphatase 2C [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20260146|gb|AAM12971.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828421|ref|XP_002882093.1| hypothetical protein ARALYDRAFT_904163 [Arabidopsis lyrata subsp. lyrata] gi|297327932|gb|EFH58352.1| hypothetical protein ARALYDRAFT_904163 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query879
TAIR|locus:2041444856 POL "poltergeist" [Arabidopsis 0.464 0.476 0.744 2.1e-297
TAIR|locus:2026605662 PLL5 "pol-like 5" [Arabidopsis 0.235 0.312 0.613 1.9e-144
TAIR|locus:2053265654 PLL4 "poltergeist like 4" [Ara 0.236 0.318 0.602 1.3e-137
TAIR|locus:2083539650 PLL3 "pol-like 3" [Arabidopsis 0.246 0.333 0.619 1.3e-133
TAIR|locus:2062481783 PLL1 "poltergeist like 1" [Ara 0.432 0.485 0.496 8.1e-125
TAIR|locus:2180152674 PLL2 "pol-like 2" [Arabidopsis 0.232 0.302 0.613 1.2e-108
TAIR|locus:2089293493 AT3G16560 [Arabidopsis thalian 0.203 0.363 0.45 5.4e-55
TAIR|locus:2151256370 AT5G02760 [Arabidopsis thalian 0.189 0.451 0.386 1.3e-35
TAIR|locus:2081770379 AT3G51370 [Arabidopsis thalian 0.188 0.437 0.36 2.7e-33
TAIR|locus:2156877385 AT5G66080 [Arabidopsis thalian 0.192 0.438 0.376 8.9e-33
TAIR|locus:2041444 POL "poltergeist" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1588 (564.1 bits), Expect = 2.1e-297, Sum P(2) = 2.1e-297
 Identities = 306/411 (74%), Positives = 358/411 (87%)

Query:   472 NLKGDNSVHRGEDPTTSGGD-GRVGLESNQDSMDSLSVSVQRQGTRKSLISSKIRKMYRK 530
             N+  +N  ++ E+P+TSGG  G     +++ ++D +  S QR GT+KS ISSKIR+MY+K
Sbjct:   434 NVALNNMTNQVENPSTSGGGAGNDPCTTDRSALDGIPNSGQRHGTKKSQISSKIRRMYQK 493

Query:   531 QKSLRKKLFPWSYDWHREEP-CIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEE 589
             QKSLRKKLFPWSYDWHREE  C++E++VESSGPIR+  SG +DHDAVLRAMA+ALESTEE
Sbjct:   494 QKSLRKKLFPWSYDWHREEGICVEEKIVESSGPIRRRWSGTVDHDAVLRAMARALESTEE 553

Query:   590 AYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFL 649
             AYM+MVEK+LD NPELALMGSCVLVMLMKDQDVYVMN+GDSRAILAQER +DRH NP F 
Sbjct:   554 AYMDMVEKSLDINPELALMGSCVLVMLMKDQDVYVMNVGDSRAILAQERLHDRHSNPGFG 613

Query:   650 KDDS-RHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTD 708
              D+   HK+RSRESLVR+ELDRISEESP+HNQ   +++ NKNRD++  RLKMRAVQLS+D
Sbjct:   614 NDEGIGHKSRSRESLVRIELDRISEESPIHNQATPISVSNKNRDVTSYRLKMRAVQLSSD 673

Query:   709 HSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDY 768
             HSTSVEEEI RI++EHP+D Q++  DRVKGQLKVTRAFGAGFLKKP  NEALLEMF+V+Y
Sbjct:   674 HSTSVEEEIWRIRSEHPEDDQSILKDRVKGQLKVTRAFGAGFLKKPNFNEALLEMFQVEY 733

Query:   769 VGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQY 828
             +G  PY++C P  VHHRL+SSDRF+VLSSDGLY+YFSNEEVVAHVTWF+ENVPEGDPAQY
Sbjct:   734 IGTDPYITCEPCTVHHRLTSSDRFMVLSSDGLYEYFSNEEVVAHVTWFIENVPEGDPAQY 793

Query:   829 LIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG 879
             LIAELL RAA KNGM+FH+LLDIP GDRRKYHDDVSVMVVSLEGRIWRSSG
Sbjct:   794 LIAELLSRAATKNGMEFHDLLDIPQGDRRKYHDDVSVMVVSLEGRIWRSSG 844
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=ISM;NAS
GO:0009934 "regulation of meristem structural organization" evidence=IGI
GO:0005886 "plasma membrane" evidence=IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IGI;RCA
GO:0010074 "maintenance of meristem identity" evidence=IGI;RCA
GO:0005543 "phospholipid binding" evidence=IDA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2026605 PLL5 "pol-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053265 PLL4 "poltergeist like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083539 PLL3 "pol-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062481 PLL1 "poltergeist like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180152 PLL2 "pol-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089293 AT3G16560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151256 AT5G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081770 AT3G51370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156877 AT5G66080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWN7P2C32_ARATH3, ., 1, ., 3, ., 1, 60.67480.94190.9672yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.160.991
3rd Layer3.1.30.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_II0836
hypothetical protein (882 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query879
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 3e-33
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 5e-27
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 3e-19
PTZ00224381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 3e-07
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 1e-05
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 4e-05
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 8e-05
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  128 bits (324), Expect = 3e-33
 Identities = 71/299 (23%), Positives = 103/299 (34%), Gaps = 111/299 (37%)

Query: 572 DHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSR 631
             + +  A+ +A    +E  +E         P+ A  G+  +V L++   +YV N+G   
Sbjct: 67  SEEDIEEALRKAFLRADEEILEE----AQDEPDDARSGTTAVVALIRGNKLYVANVG--- 119

Query: 632 AILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNR 691
                               DSR                                     
Sbjct: 120 --------------------DSR------------------------------------- 122

Query: 692 DISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFL 751
              +CR    AVQL+ DH    EEE  RI+         V N RV G L VTRA G   L
Sbjct: 123 -AVLCR-NGEAVQLTKDHKPVNEEERERIEKAG----GRVSNGRVPGVLAVTRALGDFDL 176

Query: 752 KKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVA 811
           K                    P VS  P +   +L+  D FL+L+SDGL+   SN+E V 
Sbjct: 177 K--------------------PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVD 216

Query: 812 HVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSL 870
            V      + + D  +   A+ L   A + G                 HD+++V+VV L
Sbjct: 217 IVR---SELAKEDLQE--AAQELVDLALRRG----------------SHDNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 879
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
PLN03145365 Protein phosphatase 2c; Provisional 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 100.0
KOG0699542 consensus Serine/threonine protein phosphatase [Si 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 99.97
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.96
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.96
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.96
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.94
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.67
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.59
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.32
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.27
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 98.85
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 98.73
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 96.59
KOG0698330 consensus Serine/threonine protein phosphatase [Si 94.69
PLN03145365 Protein phosphatase 2c; Provisional 90.11
PTZ00224381 protein phosphatase 2C; Provisional 89.25
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 89.13
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 88.85
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-77  Score=653.61  Aligned_cols=221  Identities=55%  Similarity=0.890  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceeEEEEEECCeEEEEEeccCcEEEEecCCCCCCCCCCCcccc
Q 002806          573 HDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDD  652 (879)
Q Consensus       573 ~~~V~~AL~rAf~~tdea~le~~~~~~~~n~ela~mGSTalV~LI~~~~LyVANVGDSRAVL~r~~~~~~~~~~~~~~~~  652 (879)
                      +..+.+||.+||+++|++|+++++++...+|+++.|||||+|++|++.+|||||+|||||||++..++.           
T Consensus       166 ~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~-----------  234 (390)
T KOG0700|consen  166 HGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNG-----------  234 (390)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCC-----------
Confidence            456999999999999999999999999999999999999999999999999999999999998877211           


Q ss_pred             ccccccchhhhHHhhhhhhcccCCcccccchhcccccccchhhhcccceEEEccccCCCCcHHHHHHHHHcCCCCCcccc
Q 002806          653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF  732 (879)
Q Consensus       653 ~~~~~~~~~~~~~~~l~ri~Ee~~~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHsps~~eEv~RI~~aGpd~~~~i~  732 (879)
                                                                   ..|.++|||+||++++++|+.||+.+||++..++.
T Consensus       235 ---------------------------------------------~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv  269 (390)
T KOG0700|consen  235 ---------------------------------------------SWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVV  269 (390)
T ss_pred             ---------------------------------------------CeEEEEecChhhccccHHHHHHHHHhCCCCcceEe
Confidence                                                         12689999999999999999999999999999988


Q ss_pred             cc--cccCceeeeeeccCCCCCCCcch-HHHHHhhhhcccCCCCCccccceEEEEEecCCCeEEEEECCcCCCCCCHHHH
Q 002806          733 ND--RVKGQLKVTRAFGAGFLKKPTCN-EALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEV  809 (879)
Q Consensus       733 n~--RV~G~LaVTRAfGD~~lKq~k~n-~~lle~fr~~yigt~P~VS~ePdV~~~~L~~~D~FLVLASDGLwD~LSneEV  809 (879)
                      +.  ||+|.|+|||||||.+||++++| +.|++||+++|++|+|||||+|+|++|+|+++|+|||||||||||+||||||
T Consensus       270 ~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeea  349 (390)
T KOG0700|consen  270 NKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEA  349 (390)
T ss_pred             eccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHH
Confidence            87  99999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhc-CCCCChHHHHHHHHHHHHHHHcCCCccccc
Q 002806          810 VAHVTWFMEN-VPEGDPAQYLIAELLFRAAKKNGMDFHELL  849 (879)
Q Consensus       810 v~iV~~~l~~-~~~gdpAq~LaaelL~raAkk~G~d~~ell  849 (879)
                      |.+|..|+.. .|.+++|++||.++|.++|++++|++++|+
T Consensus       350 V~lV~~~i~~~~pd~~~A~hLIr~aL~~aakk~~~r~s~ll  390 (390)
T KOG0700|consen  350 VSLVHEFISGKFPDGNPATHLIRHALGRAAKKRGMRLSDLL  390 (390)
T ss_pred             HHHHHHhhccCCCCCCHHHHHHHHHHhhhhhhccccHhhcC
Confidence            9999999987 899999999999999999999999888764

>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query879
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 3e-10
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 3e-10
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 9e-05
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 1e-04
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 8e-04
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 50/223 (22%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDD--SQAVFNDRVKGQLKVTRAFGAGFLK------- 752
           AV LS DH+   E E+ R+K EHP +     V  DR+ G L   RAFG    K       
Sbjct: 236 AVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQK 295
Query: 753 ------KPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSN 806
                     N+     F        PY++  P + +HRL   D+FLVL++DGL++    
Sbjct: 296 RVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHR 355
Query: 807 EEVVAHVTWFMENVPEGDPAQ---YLI-------------------------AELLFRAA 838
           ++VV  V  ++  +    P     Y +                         A  L R A
Sbjct: 356 QDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHA 415
Query: 839 KKN---GMDFHE----LLDIPHGDRRKYHDDVSVMVVSLEGRI 874
             N   G   HE    +L +P    R Y DD++++VV     +
Sbjct: 416 VGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHV 458
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query879
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 2e-40
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 5e-07
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 1e-28
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 2e-04
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 4e-21
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 3e-04
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 7e-21
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 2e-04
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 2e-20
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 4e-20
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 8e-20
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 9e-19
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 2e-04
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 2e-18
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 4e-17
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 5e-17
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 5e-04
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 1e-15
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 8e-04
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
 Score =  154 bits (390), Expect = 2e-40
 Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 50/226 (22%)

Query: 699 KMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF--NDRVKGQLKVTRAFGAGFLKKP-- 754
              AV LS DH+   E E+ R+K EHP +        DR+ G L   RAFG    K    
Sbjct: 233 SWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSID 292

Query: 755 -----------TCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQY 803
                        N+     F        PY++  P + +HRL   D+FLVL++DGL++ 
Sbjct: 293 LQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWET 352

Query: 804 FSNEEVVAHVTWFMENVPEGDP---------------------------------AQYLI 830
              ++VV  V  ++  +    P                                 A +LI
Sbjct: 353 MHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLI 412

Query: 831 AELLF--RAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRI 874
              +        +     ++L +P    R Y DD++++VV     +
Sbjct: 413 RHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHV 458
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query879
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.97
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.96
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.96
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.96
3rnr_A211 Stage II sporulation E family protein; structural 99.95
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.44
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.36
3f79_A255 Probable two-component response regulator; adaptor 99.17
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 98.88
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.49
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 97.36
3eq2_A394 Probable two-component response regulator; adaptor 97.15
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 91.25
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 90.83
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 90.13
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 89.94
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 88.93
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 85.32
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 83.65
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 82.92
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 82.22
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 81.75
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 81.2
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
Probab=100.00  E-value=8.8e-45  Score=410.67  Aligned_cols=239  Identities=30%  Similarity=0.432  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCCCCCcceeEEEEEECCeEEEEEeccCcEEEEecCCCCCCCCCCC
Q 002806          575 AVLRAMAQALESTEEAYMEMVEKA------LDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSF  648 (879)
Q Consensus       575 ~V~~AL~rAf~~tdea~le~~~~~------~~~n~ela~mGSTalV~LI~~~~LyVANVGDSRAVL~r~~~~~~~~~~~~  648 (879)
                      .+.++|++||..+|+.|.+.....      ....++...||||+++++|.+++|||||||||||||++..++        
T Consensus       160 ~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~vAnvGDSRa~l~r~~~~--------  231 (467)
T 2pnq_A          160 DVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEED--------  231 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETTEEEEEEESSCEEEEEEECTT--------
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcceEEEEEEECCEEEEEECCCceEEEEEecCC--------
Confidence            578999999999999997654320      001123456999999999999999999999999999997410        


Q ss_pred             ccccccccccchhhhHHhhhhhhcccCCcccccchhcccccccchhhhcccceEEEccccCCCCcHHHHHHHHHcCCCCC
Q 002806          649 LKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDS  728 (879)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~l~ri~Ee~~~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHsps~~eEv~RI~~aGpd~~  728 (879)
                                                                       +.|.+.+||.||++.++.|++||.++||...
T Consensus       232 -------------------------------------------------g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~  262 (467)
T 2pnq_A          232 -------------------------------------------------GSWSAVTLSNDHNAQNERELQRLKLEHPKNE  262 (467)
T ss_dssp             -------------------------------------------------SCEEEEECCCCCSTTCHHHHHHHHHTSCGGG
T ss_pred             -------------------------------------------------CcEEEEECCCCCCCCCHHHHHHHHHcCCCcc
Confidence                                                             1357999999999999999999999998653


Q ss_pred             --cccccccccCceeeeeeccCCCCCCCcchHHHHHhhhh----------------cccCCCCCccccceEEEEEecCCC
Q 002806          729 --QAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRV----------------DYVGNAPYVSCIPSIVHHRLSSSD  790 (879)
Q Consensus       729 --~~i~n~RV~G~LaVTRAfGD~~lKq~k~n~~lle~fr~----------------~yigt~P~VS~ePdV~~~~L~~~D  790 (879)
                        .++.++||.|.|+|||||||..+|.++   .+.+....                ....++|||+++|+|..++|.++|
T Consensus       263 ~~~~~~~~Rv~G~l~vtRAlGd~~~K~~~---~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D  339 (467)
T 2pnq_A          263 AKSVVKQDRLLGLLMPFRAFGDVKFKWSI---DLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQD  339 (467)
T ss_dssp             HHHHBSSSSBTTTBSSSBCEECGGGTSCH---HHHHHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTE
T ss_pred             cceeEecCccccccccchhcCchhhcccc---hhhhhhhcccccccccccccccccccccCCCcccccceEEEEEcCCCC
Confidence              345678999999999999999988642   22222222                223478999999999999999999


Q ss_pred             eEEEEECCcCCCCCCHHHHHHHHHHhhhcCCCCCh----------------------------HHHHHHHHHHHHHHHcC
Q 002806          791 RFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDP----------------------------AQYLIAELLFRAAKKNG  842 (879)
Q Consensus       791 ~FLVLASDGLwD~LSneEVv~iV~~~l~~~~~gdp----------------------------Aq~LaaelL~raAkk~G  842 (879)
                      +|||||||||||+|+++||+++|..++......+|                            ....++..|++.|...|
T Consensus       340 ~fLVLaSDGLwd~ls~~eiv~iv~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~  419 (467)
T 2pnq_A          340 KFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNN  419 (467)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHTTCSSCC-------------------------------CCHHHHHHHHHHC--
T ss_pred             eEEEEEecCccccCChHHHHHHHHHHHhhccccCcccccccCccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCC
Confidence            99999999999999999999999988754322222                            01235677788888765


Q ss_pred             ----CCc---cccccCCCCCCCCCCCceEEEEEEcCCc
Q 002806          843 ----MDF---HELLDIPHGDRRKYHDDVSVMVVSLEGR  873 (879)
Q Consensus       843 ----~d~---~ell~ip~g~rR~y~DNITVIVV~Legr  873 (879)
                          |++   .+|+.||++.+|+|+||||||||+|+..
T Consensus       420 ~~Ge~~~~~~~~ll~~~~~~~R~~~DdITViVv~~~~~  457 (467)
T 2pnq_A          420 EFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSH  457 (467)
T ss_dssp             -----------------------CCSCEEEEEEEECHH
T ss_pred             CcCcchHHHHHhhhcCCccccccCCCCcEEEEEEeCch
Confidence                554   4689999999999999999999999754
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 879
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 7e-10
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 0.002
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 7e-10
 Identities = 37/197 (18%), Positives = 61/197 (30%), Gaps = 34/197 (17%)

Query: 677 MHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRV 736
           +         +N      +     +    + DH  S   E  RI+        +V   RV
Sbjct: 131 VLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGG----SVMIQRV 186

Query: 737 KGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLS 796
            G L V+RA G    K                V   P V  I      R    D+F++L+
Sbjct: 187 NGSLAVSRALGDFDYKCVHGK-----GPTEQLVSPEPEVHDI-----ERSEEDDQFIILA 236

Query: 797 SDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDR 856
            DG++    NEE+   V   +E     D  +  +   +       G              
Sbjct: 237 CDGIWDVMGNEELCDFVRSRLEV--TDDLEK--VCNEVVDTCLYKGS------------- 279

Query: 857 RKYHDDVSVMVVSLEGR 873
               D++SV+++     
Sbjct: 280 ---RDNMSVILICFPNA 293
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query879
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.97
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 94.33
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=366.22  Aligned_cols=259  Identities=23%  Similarity=0.269  Sum_probs=205.1

Q ss_pred             ccccccchhhhhhHHHHHHhhhccCCeeEEEEEEcCCchhHHHHHHHHhhCcccccc-------CCCCCHHHHHHHHHHH
Q 002806          511 QRQGTRKSLISSKIRKMYRKQKSLRKKLFPWSYDWHREEPCIDERMVESSGPIRKCK-------SGIIDHDAVLRAMAQA  583 (879)
Q Consensus       511 ~~~~~r~~~~~~~i~~~~~k~~~~~k~~lfGVfDGHGG~~~~~S~~v~e~l~~~l~~-------s~~~d~~~V~~AL~rA  583 (879)
                      ..||.|+++++..+-... .........||||||||||..  ++.++.+.++..+..       ......+.+.++|++|
T Consensus        27 s~~G~R~~~ED~~~~~~~-~~~~~~~~~lf~V~DGhGG~~--~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~al~~a  103 (295)
T d1a6qa2          27 SMQGWRVEMEDAHTAVIG-LPSGLESWSFFAVYDGHAGSQ--VAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTG  103 (295)
T ss_dssp             EEEETSSSCCEEEEEEEE-ETTTEEEEEEEEEEEEESCSH--HHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHHHHHH
T ss_pred             eCccCCCcccCeeEEEcc-cCCCCCceEEEEEEeCCCChH--HHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHH
Confidence            358899998876432111 011224578999999999986  566666665544322       2334567799999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCcceeEEEEEECCeEEEEEeccCcEEEEecCCCCCCCCCCCccccccccccchhhh
Q 002806          584 LESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESL  663 (879)
Q Consensus       584 f~~tdea~le~~~~~~~~n~ela~mGSTalV~LI~~~~LyVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (879)
                      |..+++.+....    ........||||+++++|.++++||+||||||||+++.+                         
T Consensus       104 ~~~~~~~~~~~~----~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~-------------------------  154 (295)
T d1a6qa2         104 FLEIDEHMRVMS----EKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR-------------------------  154 (295)
T ss_dssp             HHHHHHHHHHHH----HHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT-------------------------
T ss_pred             HHHHHHHHhhhh----hhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecc-------------------------
Confidence            999999885543    334556679999999999999999999999999999977                         


Q ss_pred             HHhhhhhhcccCCcccccchhcccccccchhhhcccceEEEccccCCCCcHHHHHHHHHcCCCCCcccccccccCceeee
Q 002806          664 VRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVT  743 (879)
Q Consensus       664 ~~~~l~ri~Ee~~~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHsps~~eEv~RI~~aGpd~~~~i~n~RV~G~LaVT  743 (879)
                                                           .+.+||.||+|.++.|++||.+.|+    .+...|+.|.|++|
T Consensus       155 -------------------------------------~~~~lT~dH~~~~~~E~~Ri~~~gg----~v~~~r~~g~l~~t  193 (295)
T d1a6qa2         155 -------------------------------------KVHFFTQDHKPSNPLEKERIQNAGG----SVMIQRVNGSLAVS  193 (295)
T ss_dssp             -------------------------------------EEEEECCCCCTTSHHHHHHHHHTTC----CEETTEETTTBSCS
T ss_pred             -------------------------------------cceeeccccCcccHHHHhhHhhcCC----cccccccCCceeee
Confidence                                                 7899999999999999999999995    45578999999999


Q ss_pred             eeccCCCCCCCcchHHHHHhhhhcccCCCCCccccceEEEEEec-CCCeEEEEECCcCCCCCCHHHHHHHHHHhhhcCCC
Q 002806          744 RAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLS-SSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPE  822 (879)
Q Consensus       744 RAfGD~~lKq~k~n~~lle~fr~~yigt~P~VS~ePdV~~~~L~-~~D~FLVLASDGLwD~LSneEVv~iV~~~l~~~~~  822 (879)
                      |||||..+|....           +....++|+++|+|..+++. ++|.|||||||||||+|+++||+++|...+..   
T Consensus       194 Ra~Gd~~~k~~~~-----------~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~---  259 (295)
T d1a6qa2         194 RALGDFDYKCVHG-----------KGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEV---  259 (295)
T ss_dssp             BCEECGGGSCCTT-----------CCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTT---
T ss_pred             eccCcHHhhhccc-----------cCcccccccccccceEEEeecccceeEeeecCcccccCCHHHHHHHHHHHhhc---
Confidence            9999999987532           23456899999999999986 56789999999999999999999999866542   


Q ss_pred             CChHHHHHHHHHHHHHHHcCCCccccccCCCCCCCCCCCceEEEEEEcCCc
Q 002806          823 GDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGR  873 (879)
Q Consensus       823 gdpAq~LaaelL~raAkk~G~d~~ell~ip~g~rR~y~DNITVIVV~Legr  873 (879)
                      ...++. +++.|+..|.++|.                +||||||||.|.+.
T Consensus       260 ~~~~~~-~a~~Lv~~A~~~gs----------------~DNiTvivv~~~~~  293 (295)
T d1a6qa2         260 TDDLEK-VCNEVVDTCLYKGS----------------RDNMSVILICFPNA  293 (295)
T ss_dssp             CCCHHH-HHHHHHHHHHHTTC----------------CSCEEEEEEECTTS
T ss_pred             CCCHHH-HHHHHHHHHHhcCC----------------CCCeEEEEEeccCC
Confidence            333333 66777788887664                89999999999864
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure