BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002807
(878 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239
Pykevtedl Late Domain
pdb|2XS8|A Chain A, Crystal Structure Of Alix In Complex With The Sivagmtan-1
Aydparkll Late Domain
Length = 704
Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 182/719 (25%), Positives = 314/719 (43%), Gaps = 37/719 (5%)
Query: 13 TTNIMLAIYEKKTSSIDLYRPLRNYISLTY---SEREAFNLEDDLETVKQLRSDVERVPD 69
T +++ KKTS +DL +PL +I TY E +A E K R+ V R D
Sbjct: 6 TMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLD 65
Query: 70 PTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQ------KASQQN 123
LL+ Y+ +C IE +FP S ++ + F W DAF + K + +
Sbjct: 66 KHEGALETLLR-YYDQICSIEPKFPFSENQ---ICLTFTWKDAFDKGSLFGGSVKLALAS 121
Query: 124 IHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGS 183
+ EK+ VLFN A+ SQI + EG ++A+ + A+GAF ++++ + ++
Sbjct: 122 LGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLS--ALSR 179
Query: 184 STTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTV 243
TVDIS + G L +MLAQAQE F + AK++ Q Y+ +A
Sbjct: 180 EPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQ--- 236
Query: 244 APLKDHFDKAWVTHVQLKAALFYAEACYRYSXXXXXXXXXXXXXXRLKSGISALTEAKKS 303
KD K + K + A A Y S RL+ E K+
Sbjct: 237 CQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHA----AELIKT 292
Query: 304 PKGAAAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNE 363
+ ++ + +NR L A K+ND +Y RV ++VK +N
Sbjct: 293 VASRYDEYVN-VKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNV 351
Query: 364 VLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSI 423
+ +F +VP S ++L+ Y + D++ ++++ + L L ++LP +I
Sbjct: 352 PISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAI 411
Query: 424 LALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNXXXXXXXXXXXXXXATE 483
+ G+ T+P + + +V GG ++ +++L +L + N
Sbjct: 412 EDVSGD-TVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEAT 470
Query: 484 DAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD 543
D R++F RW R S+ L K L+ F L +A ++D +++ + H + +L
Sbjct: 471 DNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLC 530
Query: 544 R-RP-IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDD 601
+ P + +A+P+ A P ++ +E +V LK L L+ + +R GLE+ LK + D
Sbjct: 531 KPEPELNAAIPS-ANPAKTMQGSE--VVNVLKSLLSNLDEVKKEREGLENDLKSVNF--D 585
Query: 602 ILPKLMTSAG-----SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAI 655
+ K +T+ + E L E+ + Y + LL IQ ++EFS +
Sbjct: 586 MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 645
Query: 656 FNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714
+ RE+ K + A + E+ N+ EG KFY L + + + +CSD V R
Sbjct: 646 KQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 704
>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1
Length = 705
Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 181/715 (25%), Positives = 313/715 (43%), Gaps = 37/715 (5%)
Query: 17 MLAIYEKKTSSIDLYRPLRNYISLTY---SEREAFNLEDDLETVKQLRSDVERVPDPTPS 73
+++ KKTS +DL +PL +I TY E +A E K R+ V R D
Sbjct: 11 FISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEG 70
Query: 74 TRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQ------KASQQNIHLE 127
LL+ Y+ +C IE +FP S ++ + F W DAF + K + ++ E
Sbjct: 71 ALETLLR-YYDQICSIEPKFPFSENQ---ICLTFTWKDAFDKGSLFGGSVKLALASLGYE 126
Query: 128 KAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTV 187
K+ VLFN A+ SQI + EG ++A+ + A+GAF ++++ + ++ TV
Sbjct: 127 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLS--ALSREPTV 184
Query: 188 DISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLK 247
DIS + G L +MLAQAQE F + AK++ Q Y+ +A K
Sbjct: 185 DISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQ---CQYK 241
Query: 248 DHFDKAWVTHVQLKAALFYAEACYRYSXXXXXXXXXXXXXXRLKSGISALTEAKKSPKGA 307
D K + K + A A Y S RL+ E K+
Sbjct: 242 DTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHA----AELIKTVASR 297
Query: 308 AAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDA 367
+ ++ + +NR L A K+ND +Y RV ++VK +N +
Sbjct: 298 YDEYVN-VKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQ 356
Query: 368 SKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALE 427
+F +VP S ++L+ Y + D++ ++++ + L L ++LP +I +
Sbjct: 357 KFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVS 416
Query: 428 GNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNXXXXXXXXXXXXXXATEDAQF 487
G+ T+P + + +V GG ++ +++L +L + N D
Sbjct: 417 GD-TVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDL 475
Query: 488 RSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDR-RP 546
R++F RW R S+ L K L+ F L +A ++D +++ + H + +L + P
Sbjct: 476 RAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEP 535
Query: 547 -IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPK 605
+ +A+P+ A P ++ +E +V LK L L+ + +R GLE+ LK + D+ K
Sbjct: 536 ELNAAIPS-ANPAKTMQGSE--VVNVLKSLLSNLDEVKKEREGLENDLKSVNF--DMTSK 590
Query: 606 LMTSAG-----SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLE 659
+T+ + E L E+ + Y + LL IQ ++EFS +
Sbjct: 591 FLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSN 650
Query: 660 DYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714
+ RE+ K + A + E+ N+ EG KFY L + + + +CSD V R
Sbjct: 651 NEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 705
>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Ypltsl Late Domain
pdb|2R03|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE YPDL
Late Domain
pdb|2R05|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Yplasl Late Domain
Length = 697
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 181/715 (25%), Positives = 313/715 (43%), Gaps = 37/715 (5%)
Query: 17 MLAIYEKKTSSIDLYRPLRNYISLTY---SEREAFNLEDDLETVKQLRSDVERVPDPTPS 73
+++ KKTS +DL +PL +I TY E +A E K R+ V R D
Sbjct: 3 FISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEG 62
Query: 74 TRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQ------KASQQNIHLE 127
LL+ Y+ +C IE +FP S ++ + F W DAF + K + ++ E
Sbjct: 63 ALETLLR-YYDQICSIEPKFPFSENQI---CLTFTWKDAFDKGSLFGGSVKLALASLGYE 118
Query: 128 KAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTV 187
K+ VLFN A+ SQI + EG ++A+ + A+GAF ++++ + ++ TV
Sbjct: 119 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLS--ALSREPTV 176
Query: 188 DISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLK 247
DIS + G L +MLAQAQE F + AK++ Q Y+ +A K
Sbjct: 177 DISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQ---CQYK 233
Query: 248 DHFDKAWVTHVQLKAALFYAEACYRYSXXXXXXXXXXXXXXRLKSGISALTEAKKSPKGA 307
D K + K + A A Y S RL+ E K+
Sbjct: 234 DTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHA----AELIKTVASR 289
Query: 308 AAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDA 367
+ ++ + +NR L A K+ND +Y RV ++VK +N +
Sbjct: 290 YDEYVN-VKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQ 348
Query: 368 SKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALE 427
+F +VP S ++L+ Y + D++ ++++ + L L ++LP +I +
Sbjct: 349 KFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVS 408
Query: 428 GNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNXXXXXXXXXXXXXXATEDAQF 487
G+ T+P + + +V GG ++ +++L +L + N D
Sbjct: 409 GD-TVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDL 467
Query: 488 RSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDR-RP 546
R++F RW R S+ L K L+ F L +A ++D +++ + H + +L + P
Sbjct: 468 RAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEP 527
Query: 547 -IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPK 605
+ +A+P+ A P ++ +E +V LK L L+ + +R GLE+ LK + D+ K
Sbjct: 528 ELNAAIPS-ANPAKTMQGSE--VVNVLKSLLSNLDEVKKEREGLENDLKSVNF--DMTSK 582
Query: 606 LMTSAG-----SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLE 659
+T+ + E L E+ + Y + LL IQ ++EFS +
Sbjct: 583 FLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSN 642
Query: 660 DYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714
+ RE+ K + A + E+ N+ EG KFY L + + + +CSD V R
Sbjct: 643 NEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 697
>pdb|3RAU|A Chain A, Crystal Structure Of The Hd-Ptp Bro1 Domain
pdb|3RAU|B Chain B, Crystal Structure Of The Hd-Ptp Bro1 Domain
Length = 363
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 165/366 (45%), Gaps = 18/366 (4%)
Query: 17 MLAIYEKKTSSIDLYRPLRNYISLTYSER-EAFNLEDDLETVKQLRSDVERVPDPTPSTR 75
M+ + K+ ++ ++ Y E EA+N ++L+ ++ LR + RVP
Sbjct: 11 MIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYN--EELKKLELLRQNAVRVPRDFEGC- 67
Query: 76 RDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNL 135
+L+ Y L +++R P+ ++ V W + F K A ++I E+A +L+NL
Sbjct: 68 -SVLRKYLGQLHYLQSRVPMGSGQE--AAVPVTWTEIFSGKSVA-HEDIKYEQACILYNL 123
Query: 136 GAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAG 195
GA++S +G R + EG +++ F AAGAFAYLR++ + +VD+S +
Sbjct: 124 GALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREH------FPQAYSVDMSRQILT 177
Query: 196 MLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALT---VAPLKDHFDK 252
+ LML QAQEC+ E ++ + A+IS QV YY+EA AL A L K
Sbjct: 178 LNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQK 237
Query: 253 AWVTHVQLKAALFYAEACYRYSXXXXXXXXXXXXXXRLKSGISALTEAKKSPKGAAAQLL 312
W VQ+K F A A +S + L EA K KG +
Sbjct: 238 DWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQPDTVQ 297
Query: 313 DAISKLEANLNRNLDRAVKENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDA-SKEK 371
DA+ + + A K+ND +Y V +VKP+ +N A +
Sbjct: 298 DALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPAVTGPD 357
Query: 372 MFASLV 377
+FA LV
Sbjct: 358 IFAKLV 363
>pdb|2OEW|A Chain A, Structure Of AlixAIP1 BRO1 DOMAIN
pdb|3C3O|A Chain A, Alix Bro1-Domain:chmip4a Co-Crystal Structure
pdb|3C3Q|A Chain A, Alix Bro1-domain:chmip4b Co-crystal Structure
pdb|3C3R|A Chain A, Alix Bro1 Chmp4c Complex
Length = 380
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 159/372 (42%), Gaps = 27/372 (7%)
Query: 17 MLAIYEKKTSSIDLYRPLRNYISLTY---SEREAFNLEDDLETVKQLRSDVERVPDPTPS 73
+++ KKTS +DL +PL +I TY E +A E K R+ V R D
Sbjct: 25 FISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEG 84
Query: 74 TRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQ------KASQQNIHLE 127
LL+ Y+ +C IE +FP S ++ + F W DAF + K + ++ E
Sbjct: 85 ALETLLR-YYDQICSIEPKFPFSENQ---ICLTFTWKDAFDKGSLFGGSVKLALASLGYE 140
Query: 128 KAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTV 187
K+ VLFN A+ SQI + EG ++A+ + A+GAF ++++ + ++ TV
Sbjct: 141 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLS--ALSREPTV 198
Query: 188 DISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLK 247
DIS + G L +MLAQAQE F + AK++ Q Y+ +A K
Sbjct: 199 DISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQ---CQYK 255
Query: 248 DHFDKAWVTHVQLKAALFYAEACYRYSXXXXXXXXXXXXXXRLKSGISALTEAKKSPKGA 307
D K + K + A A Y S + I+ L A + K
Sbjct: 256 DTLPKEVFPVLAAKHCIMQANAEYHQS-------ILAKQQKKFGEEIARLQHAAELIKTV 308
Query: 308 AAQLLDAIS--KLEANLNRNLDRAVKENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVL 365
A++ + ++ +NR L A K+ND +Y RV ++VK +N +
Sbjct: 309 ASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPI 368
Query: 366 DASKEKMFASLV 377
+F +V
Sbjct: 369 SQKFTDLFEKMV 380
>pdb|2OEX|A Chain A, Structure Of AlixAIP1 V DOMAIN
pdb|2OEX|B Chain B, Structure Of AlixAIP1 V DOMAIN
Length = 351
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 154/346 (44%), Gaps = 14/346 (4%)
Query: 377 VPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADL 436
+P S ++L+ Y + D++ + ++ + L L ++LP +I + G+ T+P +
Sbjct: 8 MPVSVQQSLAAYNQRKADLVNRSIAQXREATTLANGVLASLNLPAAIEDVSGD-TVPQSI 66
Query: 437 KEEVEAVQISGGPAALEAELQQLRDLRRVNXXXXXXXXXXXXXXATEDAQFRSQFGTRWT 496
+ +V GG ++ +++L +L + N D R++F RW
Sbjct: 67 LTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQ 126
Query: 497 RPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDR-RP-IESALPTL 554
R S+ L K L+ F L +A ++D +++ + H + +L + P + +A+P+
Sbjct: 127 RTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPS- 185
Query: 555 ARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAG--- 611
A P + +E +V LK L L+ + +R GLE+ LK + D K +T+
Sbjct: 186 ANPAKTXQGSE--VVNVLKSLLSNLDEVKKEREGLENDLKSVNF--DXTSKFLTALAQDG 241
Query: 612 --SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKC 668
+ E L E+ + Y + LL IQ ++EFS + RE+
Sbjct: 242 VINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKXKQSNNEANLREEV 301
Query: 669 YKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714
K + A + E+ N+ EG KFY L + + + +CSD V R
Sbjct: 302 LKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 347
>pdb|2OJQ|A Chain A, Crystal Structure Of Alix V Domain
Length = 348
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 153/345 (44%), Gaps = 14/345 (4%)
Query: 378 PDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLK 437
P S ++L+ Y + D++ + ++ + L L ++LP +I + G+ T+P +
Sbjct: 6 PVSVQQSLAAYNQRKADLVNRSIAQXREATTLANGVLASLNLPAAIEDVSGD-TVPQSIL 64
Query: 438 EEVEAVQISGGPAALEAELQQLRDLRRVNXXXXXXXXXXXXXXATEDAQFRSQFGTRWTR 497
+ +V GG ++ +++L +L + N D R++F RW R
Sbjct: 65 TKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQR 124
Query: 498 PQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDR-RP-IESALPTLA 555
S+ L K L+ F L +A ++D +++ + H + +L + P + +A+P+ A
Sbjct: 125 TPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPS-A 183
Query: 556 RPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAG---- 611
P + +E +V LK L L+ + +R GLE+ LK + D K +T+
Sbjct: 184 NPAKTXQGSE--VVSVLKSLLSNLDEVKKEREGLENDLKSVNF--DXTSKFLTALAQDGV 239
Query: 612 -SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKCY 669
+ E L E+ + Y + LL IQ ++EFS + RE+
Sbjct: 240 INEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKXKQSNNEANLREEVL 299
Query: 670 KQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714
K + A + E+ N+ EG KFY L + + + +CSD V R
Sbjct: 300 KNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 344
>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The
C-Terminal Tails Of Chmp5
pdb|3UM0|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 410
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 108/270 (40%), Gaps = 22/270 (8%)
Query: 107 FLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIG--LSCDRTTVEGRRLASH-SFIA 163
F W D + + ++QQ+ E ++ FN+ Y++ L+ E H S
Sbjct: 89 FKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKI 148
Query: 164 AAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLML---AQAQECVFENTIAKGSTP 220
AAG F +L+++ K + D+ + ++E ++ A+AQE I P
Sbjct: 149 AAGIFKHLKESHLPKLITPAEKGRDLE---SRLIEAYVIQCQAEAQEVTIARAIELKHAP 205
Query: 221 GVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEA-CYR-----YS 274
G+ A ++ + +Y++A T++ L+ + W ++ LK + A A CY S
Sbjct: 206 GLIAALAYETANFYQKA--DHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLAS 263
Query: 275 XXXXXXXXXXXXXXRLKSGISALTEAKKSPKGAAAQLLDA----ISKLEANLNRNLDRAV 330
+L + AL + KG + + KL + L++
Sbjct: 264 DKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQ 323
Query: 331 KENDRVYLMRVXXXXXXXXXXA-FSMVKPM 359
+EN +Y ++ A + +V+P+
Sbjct: 324 RENGFIYFQKIPTEAPQLELKANYGLVEPI 353
>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|B Chain B, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|C Chain C, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
Length = 407
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 108/270 (40%), Gaps = 22/270 (8%)
Query: 107 FLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIG--LSCDRTTVEGRRLASH-SFIA 163
F W D + + ++QQ+ E ++ FN+ Y++ L+ E H S
Sbjct: 96 FKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKI 155
Query: 164 AAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLML---AQAQECVFENTIAKGSTP 220
AAG F +L+++ K + D+ + ++E ++ A+AQE I P
Sbjct: 156 AAGIFKHLKESHLPKLITPAEKGRDLE---SRLIEAYVIQCQAEAQEVTIARAIELKHAP 212
Query: 221 GVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEA-CYR-----YS 274
G+ A ++ + +Y++A T++ L+ + W ++ LK + A A CY S
Sbjct: 213 GLIAALAYETANFYQKA--DHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLAS 270
Query: 275 XXXXXXXXXXXXXXRLKSGISALTEAKKSPKGAAAQLLDA----ISKLEANLNRNLDRAV 330
+L + AL + KG + + KL + L++
Sbjct: 271 DKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQ 330
Query: 331 KENDRVYLMRVXXXXXXXXXXA-FSMVKPM 359
+EN +Y ++ A + +V+P+
Sbjct: 331 RENGFIYFQKIPTEAPQLELKANYGLVEPI 360
>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp4b
Length = 411
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 108/270 (40%), Gaps = 22/270 (8%)
Query: 107 FLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIG--LSCDRTTVEGRRLASH-SFIA 163
F W D + + ++QQ+ E ++ FN+ Y++ L+ E H S
Sbjct: 90 FKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKI 149
Query: 164 AAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLML---AQAQECVFENTIAKGSTP 220
AAG F +L+++ K + D+ + ++E ++ A+AQE I P
Sbjct: 150 AAGIFKHLKESHLPKLITPAEKGRDLE---SRLIEAYVIQCQAEAQEVTIARAIELKHAP 206
Query: 221 GVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEA-CYR-----YS 274
G+ A ++ + +Y++A T++ L+ + W ++ LK + A A CY S
Sbjct: 207 GLIAALAYETANFYQKA--DHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLAS 264
Query: 275 XXXXXXXXXXXXXXRLKSGISALTEAKKSPKGAAAQLLDA----ISKLEANLNRNLDRAV 330
+L + AL + KG + + KL + L++
Sbjct: 265 DKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQ 324
Query: 331 KENDRVYLMRVXXXXXXXXXXA-FSMVKPM 359
+EN +Y ++ A + +V+P+
Sbjct: 325 RENGFIYFQKIPTEAPQLELKANYGLVEPI 354
>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM1|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 376
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Query: 107 FLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIG--LSCDRTTVEGRRLASH-SFIA 163
F W D + + ++QQ+ E ++ FN+ Y++ L+ E H S
Sbjct: 89 FKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKI 148
Query: 164 AAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLML---AQAQECVFENTIAKGSTP 220
AAG F +L+++ K + D+ + ++E ++ A+AQE I P
Sbjct: 149 AAGIFKHLKESHLPKLITPAEKGRDLE---SRLIEAYVIQCQAEAQEVTIARAIELKHAP 205
Query: 221 GVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEA-CYR 272
G+ A ++ + +Y++A T++ L+ + W ++ LK + A A CY
Sbjct: 206 GLIAALAYETANFYQKA--DHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYH 256
>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain
Length = 376
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Query: 107 FLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIG--LSCDRTTVEGRRLASH-SFIA 163
F W D + + ++QQ+ E ++ FN+ Y++ L+ E H S
Sbjct: 92 FKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKI 151
Query: 164 AAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLML---AQAQECVFENTIAKGSTP 220
AAG F +L+++ K + D+ + ++E ++ A+AQE I P
Sbjct: 152 AAGIFKHLKESHLPKLITPAEKGRDLE---SRLIEAYVIQCQAEAQEVTIARAIELKHAP 208
Query: 221 GVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEA-CYR 272
G+ A ++ + +Y++A T++ L+ + W ++ LK + A A CY
Sbjct: 209 GLIAALAYETANFYQKA--DHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYH 259
>pdb|1ZB1|A Chain A, Structure Basis For Endosomal Targeting By The Bro1 Domain
pdb|1ZB1|B Chain B, Structure Basis For Endosomal Targeting By The Bro1 Domain
Length = 392
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Query: 23 KKTSSIDLYRPLRNYISLTY--SEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQ 80
K T +D + L +Y+ +Y S+ F E + LR++ P+ + ++L
Sbjct: 16 KDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELAPSSLSEQNL-- 73
Query: 81 NYFKALCLIETRFPISPDKDHINTVMFLWFDA-FKQKQKA---SQQNIHLEKAAVLFNLG 136
Y+ L + R + ++ F W+DA + QK +Q + EK+ LFN+
Sbjct: 74 KYYSFLEHLYFRLGSKGSRLKMD---FTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIA 130
Query: 137 AVYSQIGLSCDRTTV-EGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAG 195
+++QI R + E + + + A F YL +N +S +VD+ E
Sbjct: 131 VIFTQIA----RENINEDYKNSIANLTKAFSCFEYLSENFL------NSPSVDLQSENTR 180
Query: 196 MLERLMLAQAQE 207
L + A+AQE
Sbjct: 181 FLANICHAEAQE 192
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 170 YLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQ 229
Y+ N A +G S VD ++ A ++ L + + + + G + A ++R+
Sbjct: 294 YIGKNGFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAADMARR 353
Query: 230 VGLYYEEALGALTVAPLKDHF 250
VG+ Y+E + +AP+ D F
Sbjct: 354 VGVRYDE----IAIAPMFDAF 370
>pdb|2YL0|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: As
Isolated L16a Variant At 0.95 A Resolution
pdb|2YL1|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Carbon
Monooxide Bound L16a Variant At 1.03 A Resolution -
Restraint Refinement
pdb|2YLG|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans:
Ascorbate And Carbon Monooxide Bound L16a Variant At
1.05 A Resolution
pdb|3ZQY|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Carbon
Monooxide Bound L16a Variant At 1.03 A Resolution-
Non-Restraint Refinement
Length = 127
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2YL3|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Carbon
Monooxide Bound L16g Variant At 1.04 A Resolution -
Restraint Refined
pdb|2YL7|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: As
Isolated L16g Variant At 0.9 A Resolution - Restraint
Refinement
pdb|3ZTM|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: As
Isolated L16g Variant At 0.9 A Resolution: Unrestraint
Refinement
pdb|3ZTZ|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Carbon
Monooxide Bound L16g Variant At 1.05 A Resolution:
Unrestraint Refinement
Length = 127
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|1CGO|A Chain A, Cytochrome C'
Length = 127
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2YKZ|A Chain A, Recombinant Native Cytochrome C Prime From Alcaligenes
Xylosoxidans At 0.84 A Resolution: Restrained Refinement
pdb|3ZQV|A Chain A, Recombinant Native Cytochrome C Prime From Alcaligenes
Xylosoxidans At 0.84 A Resolution: Non-Restrained
Refinement
Length = 127
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2XLO|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124e Variant With Bound No
pdb|2XM4|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124e Variant
Length = 127
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2XLE|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124k Variant With Bound No
pdb|2XM0|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124k Variant
Length = 127
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2XLH|A Chain A, Reduced Structure Of R124a Mutant Of Cytochrome C' From
Alcaligenes Xylosoxidans
pdb|2XL6|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124a Variant With Bound No
Length = 127
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|1E83|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans-Oxidized
Structure
pdb|1E84|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans-Reduced
Structure
pdb|1E85|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans-Reduced
Structure With No Bound To Proximal Side Of Heme
pdb|1E86|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans-Reduced
Structure With Co Bound To Distal Side Of Heme
pdb|2XLM|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
Recombinant Native With Bound No
pdb|2YLD|A Chain A, Recombinant Native Cytochrome C Prime From Alcaligenes
Xylosoxidans: Carbon Monooxide Bound At 1.25 A
pdb|2YLI|A Chain A, Recombinant Native Cytochrome C Prime From Alcaligenes
Xylosoxidans In Its Ferrous Form At 1.45 A
pdb|3ZWI|A Chain A, Recombinant Native Cytochrome C Prime From Alcaligenes
Xylosoxidans: Carbon Monooxide Bound At 1.25
A:unrestraint Refinement
Length = 127
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|1CGN|A Chain A, Cytochrome C'
Length = 127
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAAGFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2XLD|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124q Variant
pdb|2XLW|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124q Variant With Bound No
Length = 127
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2XL8|A Chain A, Reduced Structure Of R124f Mutant Of Cytochrome C' From
Alcaligenes Xylosoxidans
pdb|2XLV|A Chain A, Cytochrome C Prime From Alcaligenes Xylosoxidans: Ferrous
R124f Variant With Bound No
Length = 127
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 108 LWFDA--FKQKQKASQQNIHLEKAAV----LFNLGAVYSQIGLSC 146
+W DA FKQKQ+A Q NI AA L L A + +G SC
Sbjct: 72 IWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASC 116
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 337
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 666 EKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDV 725
+KC + +Q KY ++ E++ + Y+ + + + +QC F R + +E++ D+
Sbjct: 193 DKCRQDVQKTQEKYEKVLEDVGKTTPQYM---EGMEQVFEQCQQFEEKRLVFLKEVLLDI 249
Query: 726 QRQM 729
+R +
Sbjct: 250 KRHL 253
>pdb|2VAF|A Chain A, Crystal Structure Of Human Cardiac Calsequestrin
Length = 378
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNL--EDDLETVKQLRSDVERV 67
+L Y +KT IDL+RP +++T ++ + +DDL T ++L +E V
Sbjct: 292 LLVAYWEKTFKIDLFRPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDV 344
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 46 EAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTV 105
EA N + D +T + +++ D PS D+ + F+ + +N +
Sbjct: 62 EASNFQLDRKTRFIIHGFLDKAEDSWPS---DMCKKMFEV--------------EKVNCI 104
Query: 106 MFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHS 160
W + + QNI + A F + A+ +Q+G S + V G L +H+
Sbjct: 105 CVDWRHGSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHT 159
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 46 EAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTV 105
EA N + D +T + +++ D PS D+ + F+ + +N +
Sbjct: 64 EASNFQLDRKTRFIIHGFLDKAEDSWPS---DMCKKMFEV--------------EKVNCI 106
Query: 106 MFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHS 160
W + + QNI + A F + A+ +Q+G S + V G L +H+
Sbjct: 107 CVDWRHGSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHT 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,238,996
Number of Sequences: 62578
Number of extensions: 705947
Number of successful extensions: 1956
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1923
Number of HSP's gapped (non-prelim): 35
length of query: 878
length of database: 14,973,337
effective HSP length: 107
effective length of query: 771
effective length of database: 8,277,491
effective search space: 6381945561
effective search space used: 6381945561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)