Query 002807
Match_columns 878
No_of_seqs 284 out of 754
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 11:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2220 Predicted signal trans 100.0 3E-100 7E-105 900.2 68.6 688 18-727 6-699 (714)
2 cd09241 BRO1_ScRim20-like Prot 100.0 1.4E-77 3.1E-82 668.4 38.8 351 16-383 1-355 (355)
3 cd09239 BRO1_HD-PTP_like Prote 100.0 1.4E-76 3.1E-81 657.6 38.0 350 12-373 3-361 (361)
4 cd09246 BRO1_Alix_like_1 Prote 100.0 2.2E-76 4.7E-81 657.2 39.3 347 17-367 1-348 (353)
5 cd09240 BRO1_Alix Protein-inte 100.0 3.5E-74 7.6E-79 638.4 38.5 336 15-362 1-345 (346)
6 PF03097 BRO1: BRO1-like domai 100.0 1.2E-74 2.5E-79 655.3 32.6 372 16-400 1-377 (377)
7 cd09242 BRO1_ScBro1_like Prote 100.0 8.8E-74 1.9E-78 635.7 38.9 335 17-363 1-347 (348)
8 cd09244 BRO1_Rhophilin Protein 100.0 2.3E-69 4.9E-74 592.1 37.0 338 17-373 1-350 (350)
9 cd09248 BRO1_Rhophilin_1 Prote 100.0 1.1E-65 2.4E-70 560.8 36.1 336 17-373 1-384 (384)
10 cd09034 BRO1_Alix_like Protein 100.0 1.1E-64 2.4E-69 566.8 36.6 338 17-361 1-345 (345)
11 cd09238 V_Alix_like_1 Protein- 100.0 3.5E-62 7.6E-67 540.5 44.1 337 378-714 1-339 (339)
12 cd09236 V_AnPalA_UmRIM20_like 100.0 1.5E-60 3.3E-65 530.8 44.9 335 378-714 1-353 (353)
13 cd09235 V_Alix Middle V-domain 100.0 5.3E-60 1.2E-64 523.6 43.6 331 378-714 1-339 (339)
14 cd09249 BRO1_Rhophilin_2 Prote 100.0 1.2E-60 2.6E-65 520.4 35.8 338 17-373 1-385 (385)
15 cd08915 V_Alix_like Protein-in 100.0 2.8E-57 6.2E-62 505.1 43.7 333 378-714 1-342 (342)
16 cd09234 V_HD-PTP_like Protein- 100.0 2.2E-56 4.8E-61 494.8 44.1 331 378-714 1-337 (337)
17 cd09237 V_ScBro1_like Protein- 100.0 6.9E-56 1.5E-60 495.2 40.9 333 378-714 1-356 (356)
18 cd09243 BRO1_Brox_like Protein 100.0 2.5E-55 5.5E-60 482.6 36.3 330 18-361 3-353 (353)
19 cd09247 BRO1_Alix_like_2 Prote 100.0 2.8E-51 6.1E-56 455.2 31.4 324 20-362 3-345 (346)
20 cd09245 BRO1_UmRIM23-like Prot 100.0 8.1E-51 1.8E-55 456.9 32.1 286 73-361 57-408 (413)
21 PF13949 ALIX_LYPXL_bnd: ALIX 100.0 1.8E-46 4E-51 411.3 36.8 290 426-718 1-296 (296)
22 KOG2220 Predicted signal trans 99.0 5.1E-07 1.1E-11 108.8 31.8 181 15-211 101-282 (714)
23 KOG1924 RhoA GTPase effector D 98.9 1E-06 2.2E-11 101.6 30.8 48 409-462 148-195 (1102)
24 KOG1924 RhoA GTPase effector D 98.2 0.00024 5.1E-09 82.8 23.3 13 573-585 368-380 (1102)
25 KOG0994 Extracellular matrix g 96.9 2.1 4.6E-05 53.2 34.5 73 220-295 1170-1242(1758)
26 KOG0994 Extracellular matrix g 96.7 2.9 6.2E-05 52.1 32.6 125 401-541 1464-1595(1758)
27 KOG4368 Predicted RNA binding 96.7 1.9 4.1E-05 49.9 33.0 30 696-725 259-288 (757)
28 KOG0307 Vesicle coat complex C 96.6 2.4 5.1E-05 52.9 30.3 27 466-492 500-526 (1049)
29 PHA03247 large tegument protei 96.2 0.094 2E-06 69.4 16.4 119 565-685 1645-1771(3151)
30 KOG2199 Signal transducing ada 96.2 0.083 1.8E-06 58.2 13.7 22 676-697 344-365 (462)
31 PHA03247 large tegument protei 96.1 0.12 2.6E-06 68.5 16.3 31 504-534 1996-2026(3151)
32 KOG0260 RNA polymerase II, lar 95.6 0.44 9.5E-06 59.0 17.3 17 50-66 489-505 (1605)
33 KOG0250 DNA repair protein RAD 95.5 2.4 5.3E-05 52.9 23.5 184 506-689 278-465 (1074)
34 KOG4302 Microtubule-associated 95.4 9 0.00019 46.3 34.3 178 399-598 66-257 (660)
35 PRK04778 septation ring format 95.4 9.1 0.0002 46.3 38.9 50 249-301 68-118 (569)
36 PF13514 AAA_27: AAA domain 95.1 17 0.00036 47.8 35.5 55 469-523 751-805 (1111)
37 KOG4368 Predicted RNA binding 95.1 9 0.0002 44.6 26.1 21 714-734 266-286 (757)
38 KOG4849 mRNA cleavage factor I 94.9 0.57 1.2E-05 50.7 14.1 13 740-752 204-216 (498)
39 PF06160 EzrA: Septation ring 94.7 13 0.00029 44.7 34.2 101 386-495 63-163 (560)
40 COG1196 Smc Chromosome segrega 94.6 22 0.00047 46.9 31.4 54 674-727 967-1020(1163)
41 KOG0132 RNA polymerase II C-te 94.5 0.96 2.1E-05 54.0 15.8 21 221-241 27-47 (894)
42 KOG0260 RNA polymerase II, lar 94.1 1.6 3.6E-05 54.3 17.1 18 262-279 641-658 (1605)
43 KOG4672 Uncharacterized conser 93.8 0.39 8.4E-06 53.1 10.2 11 433-443 49-59 (487)
44 KOG0307 Vesicle coat complex C 93.8 0.88 1.9E-05 56.5 14.2 13 127-139 163-175 (1049)
45 KOG0996 Structural maintenance 93.2 32 0.0007 43.7 27.2 46 668-713 975-1020(1293)
46 KOG0132 RNA polymerase II C-te 93.1 2.2 4.7E-05 51.2 15.4 12 701-712 517-528 (894)
47 TIGR00606 rad50 rad50. This fa 92.9 36 0.00079 45.5 28.5 45 432-479 167-211 (1311)
48 PF05667 DUF812: Protein of un 92.8 29 0.00062 42.0 30.8 28 510-537 395-422 (594)
49 TIGR03185 DNA_S_dndD DNA sulfu 92.6 33 0.00071 42.2 26.6 18 446-463 178-195 (650)
50 KOG1923 Rac1 GTPase effector F 92.0 2.6 5.7E-05 50.6 14.3 11 701-711 223-233 (830)
51 KOG4302 Microtubule-associated 92.0 35 0.00076 41.4 28.2 114 482-598 75-191 (660)
52 PF09726 Macoilin: Transmembra 92.0 38 0.00083 41.8 25.4 220 502-731 418-658 (697)
53 PRK04778 septation ring format 91.6 39 0.00084 40.9 32.3 100 387-495 68-167 (569)
54 KOG4673 Transcription factor T 91.3 39 0.00085 40.4 27.4 109 474-600 376-486 (961)
55 PRK07764 DNA polymerase III su 91.2 43 0.00093 42.3 24.6 12 696-707 355-366 (824)
56 KOG1984 Vesicle coat complex C 91.1 7.1 0.00015 47.7 16.6 9 727-735 29-37 (1007)
57 KOG0995 Centromere-associated 90.7 41 0.00089 39.7 25.0 33 505-537 269-301 (581)
58 KOG0250 DNA repair protein RAD 90.5 60 0.0013 41.2 25.5 90 628-726 445-541 (1074)
59 TIGR02168 SMC_prok_B chromosom 90.3 56 0.0012 42.8 26.2 32 447-478 165-196 (1179)
60 PF07888 CALCOCO1: Calcium bin 90.3 46 0.00099 39.5 34.0 30 464-493 167-196 (546)
61 KOG1923 Rac1 GTPase effector F 89.5 13 0.00029 44.8 17.0 12 432-443 17-28 (830)
62 KOG1676 K-homology type RNA bi 89.4 2.6 5.6E-05 49.4 11.0 18 672-689 287-304 (600)
63 KOG0976 Rho/Rac1-interacting s 89.4 60 0.0013 39.6 27.6 31 567-597 372-402 (1265)
64 KOG0976 Rho/Rac1-interacting s 89.1 63 0.0014 39.5 30.5 33 506-538 246-278 (1265)
65 PRK10263 DNA translocase FtsK; 89.1 0.83 1.8E-05 58.5 7.4 10 488-498 520-529 (1355)
66 KOG1676 K-homology type RNA bi 88.6 2.2 4.8E-05 49.9 9.7 7 727-733 385-391 (600)
67 PF13949 ALIX_LYPXL_bnd: ALIX 88.4 33 0.00071 37.5 18.8 86 566-657 196-293 (296)
68 PF12128 DUF3584: Protein of u 88.1 1E+02 0.0023 40.8 29.5 27 700-726 897-923 (1201)
69 KOG2460 Signal recognition par 87.1 5.1 0.00011 46.4 11.2 56 251-306 406-461 (593)
70 PRK10263 DNA translocase FtsK; 87.1 2.5 5.5E-05 54.3 9.8 6 253-258 182-187 (1355)
71 KOG0161 Myosin class II heavy 86.7 1.4E+02 0.0031 40.9 32.4 90 627-718 1334-1423(1930)
72 PF04652 DUF605: Vta1 like; I 86.6 3.6 7.8E-05 46.9 10.1 22 566-587 40-61 (380)
73 KOG0933 Structural maintenance 86.1 1.1E+02 0.0023 38.7 23.2 263 433-727 158-424 (1174)
74 KOG0971 Microtubule-associated 85.8 1E+02 0.0022 38.4 28.1 85 449-543 233-317 (1243)
75 PRK02224 chromosome segregatio 85.8 1.2E+02 0.0025 38.9 37.5 38 505-542 408-445 (880)
76 KOG1830 Wiskott Aldrich syndro 85.1 14 0.00031 41.5 13.1 24 452-475 34-57 (518)
77 KOG4672 Uncharacterized conser 84.9 7.6 0.00017 43.4 10.8 14 461-474 81-94 (487)
78 KOG1830 Wiskott Aldrich syndro 84.8 32 0.0007 38.8 15.6 16 449-464 34-49 (518)
79 KOG0243 Kinesin-like protein [ 84.8 1.3E+02 0.0028 38.5 31.0 164 467-655 447-611 (1041)
80 PHA03378 EBNA-3B; Provisional 84.8 13 0.00027 44.3 13.0 11 524-534 418-428 (991)
81 PF06160 EzrA: Septation ring 84.5 1E+02 0.0022 37.2 41.6 27 569-595 343-369 (560)
82 cd09236 V_AnPalA_UmRIM20_like 84.4 66 0.0014 36.4 18.8 77 566-644 257-338 (353)
83 TIGR03185 DNA_S_dndD DNA sulfu 84.1 1.2E+02 0.0025 37.5 35.5 79 569-649 375-455 (650)
84 PHA03378 EBNA-3B; Provisional 84.0 21 0.00046 42.5 14.3 6 730-735 639-644 (991)
85 KOG0995 Centromere-associated 84.0 1E+02 0.0022 36.6 35.9 83 395-489 232-315 (581)
86 KOG0971 Microtubule-associated 83.1 1.3E+02 0.0029 37.4 29.6 28 668-695 519-546 (1243)
87 KOG0243 Kinesin-like protein [ 83.0 1.5E+02 0.0032 37.9 28.6 26 507-532 530-555 (1041)
88 COG1196 Smc Chromosome segrega 82.7 1.8E+02 0.0038 38.6 34.3 9 386-394 168-176 (1163)
89 PF01213 CAP_N: Adenylate cycl 82.0 44 0.00095 37.1 15.5 73 613-685 49-123 (312)
90 PRK10869 recombination and rep 82.0 1.3E+02 0.0027 36.4 23.3 32 706-737 360-391 (553)
91 PRK03918 chromosome segregatio 81.9 1.6E+02 0.0035 37.6 31.3 43 433-478 144-186 (880)
92 cd02679 MIT_spastin MIT: domai 81.7 10 0.00023 33.1 8.4 71 261-331 2-74 (79)
93 cd02682 MIT_AAA_Arch MIT: doma 81.2 11 0.00023 32.6 8.2 64 266-334 5-68 (75)
94 PHA03377 EBNA-3C; Provisional 81.1 15 0.00033 43.9 11.8 6 787-792 760-765 (1000)
95 PRK02224 chromosome segregatio 80.5 1.8E+02 0.0039 37.2 37.4 14 370-383 152-165 (880)
96 PF03276 Gag_spuma: Spumavirus 80.2 43 0.00092 39.3 14.8 21 705-725 150-170 (582)
97 PF10146 zf-C4H2: Zinc finger- 79.4 90 0.0019 33.1 17.1 55 639-693 49-104 (230)
98 KOG3091 Nuclear pore complex, 79.4 1.3E+02 0.0029 35.0 18.8 22 561-582 409-430 (508)
99 PRK04863 mukB cell division pr 79.3 2.5E+02 0.0054 38.1 33.5 41 691-732 558-598 (1486)
100 PRK04863 mukB cell division pr 79.2 2.5E+02 0.0054 38.1 32.9 38 506-543 439-476 (1486)
101 PHA03377 EBNA-3C; Provisional 79.0 27 0.00059 41.9 13.0 10 476-485 514-523 (1000)
102 PHA03369 capsid maturational p 78.8 25 0.00054 41.5 12.5 23 521-543 123-145 (663)
103 cd09238 V_Alix_like_1 Protein- 78.2 40 0.00086 37.9 14.1 32 565-596 242-273 (339)
104 PF04136 Sec34: Sec34-like fam 77.6 34 0.00074 34.0 11.8 44 662-705 44-87 (157)
105 TIGR02169 SMC_prok_A chromosom 77.6 2.4E+02 0.0052 37.0 34.8 54 674-727 976-1029(1164)
106 cd02681 MIT_calpain7_1 MIT: do 77.6 14 0.00031 31.9 7.9 65 266-335 5-70 (76)
107 KOG4403 Cell surface glycoprot 77.0 98 0.0021 35.2 15.9 174 445-639 237-431 (575)
108 KOG0161 Myosin class II heavy 76.0 3.3E+02 0.0071 37.7 34.3 36 452-487 892-927 (1930)
109 PHA02562 46 endonuclease subun 74.8 2E+02 0.0042 34.6 30.4 15 261-275 40-54 (562)
110 PF04108 APG17: Autophagy prot 74.5 1.7E+02 0.0037 33.8 26.7 34 453-486 8-41 (412)
111 PLN03229 acetyl-coenzyme A car 74.4 2.2E+02 0.0049 35.1 20.0 41 405-445 470-518 (762)
112 PF04212 MIT: MIT (microtubule 74.1 22 0.00047 29.8 8.2 61 266-331 4-64 (69)
113 PF10168 Nup88: Nuclear pore c 74.1 2.4E+02 0.0051 35.2 23.2 41 497-537 627-667 (717)
114 PF09403 FadA: Adhesion protei 73.6 53 0.0011 31.4 11.3 68 569-647 54-121 (126)
115 PF14643 DUF4455: Domain of un 73.5 2E+02 0.0043 34.0 35.0 173 397-596 36-234 (473)
116 KOG4460 Nuclear pore complex, 73.1 2E+02 0.0043 33.9 22.5 131 451-594 606-736 (741)
117 KOG0977 Nuclear envelope prote 72.3 2.2E+02 0.0047 34.0 24.4 81 457-542 42-125 (546)
118 PF12238 MSA-2c: Merozoite sur 71.1 1.3E+02 0.0029 31.1 15.5 26 685-710 103-128 (205)
119 KOG0612 Rho-associated, coiled 70.5 3.3E+02 0.0072 35.4 30.4 9 233-241 218-226 (1317)
120 PF05667 DUF812: Protein of un 70.4 2.6E+02 0.0056 34.1 24.3 95 624-727 489-589 (594)
121 COG5178 PRP8 U5 snRNP spliceos 70.0 3.6 7.8E-05 51.1 3.2 9 825-833 24-32 (2365)
122 KOG0391 SNF2 family DNA-depend 69.8 40 0.00087 43.1 11.8 35 370-407 1112-1146(1958)
123 PF05384 DegS: Sensor protein 69.7 1.2E+02 0.0027 30.1 14.5 62 524-596 56-117 (159)
124 PRK15319 AIDA autotransporter- 68.5 8.9 0.00019 50.7 6.4 12 125-136 1210-1221(2039)
125 KOG0977 Nuclear envelope prote 68.4 2.6E+02 0.0057 33.4 27.3 43 679-721 326-368 (546)
126 COG4477 EzrA Negative regulato 68.4 2.5E+02 0.0055 33.2 32.4 80 626-709 313-393 (570)
127 PRK11637 AmiB activator; Provi 68.0 2.4E+02 0.0052 32.8 25.5 18 584-601 121-138 (428)
128 KOG2604 Subunit of cis-Golgi t 67.1 43 0.00094 40.3 11.0 82 622-703 91-176 (733)
129 cd02683 MIT_1 MIT: domain cont 66.8 35 0.00075 29.6 7.9 63 266-333 5-67 (77)
130 PHA02562 46 endonuclease subun 66.8 2.8E+02 0.0062 33.2 31.3 16 370-385 153-168 (562)
131 PHA03369 capsid maturational p 66.7 96 0.0021 36.9 13.5 15 682-696 324-338 (663)
132 PF12128 DUF3584: Protein of u 66.4 4.3E+02 0.0094 35.2 32.5 27 570-596 366-392 (1201)
133 KOG4264 Nucleo-cytoplasmic pro 64.7 73 0.0016 37.1 11.8 8 727-734 508-515 (694)
134 PF07719 TPR_2: Tetratricopept 63.2 15 0.00033 25.4 4.3 30 267-296 1-30 (34)
135 KOG1840 Kinesin light chain [C 63.1 2.6E+02 0.0056 33.4 16.6 147 125-301 279-443 (508)
136 PRK11637 AmiB activator; Provi 62.8 3E+02 0.0064 32.0 28.9 26 661-686 213-238 (428)
137 smart00745 MIT Microtubule Int 62.7 56 0.0012 27.9 8.6 63 264-331 5-67 (77)
138 COG5185 HEC1 Protein involved 62.1 3E+02 0.0066 31.9 24.7 20 151-175 102-121 (622)
139 KOG4657 Uncharacterized conser 62.0 1.7E+02 0.0036 30.7 12.7 54 664-718 126-180 (246)
140 cd02677 MIT_SNX15 MIT: domain 61.8 72 0.0016 27.5 8.9 63 264-331 3-65 (75)
141 PF00515 TPR_1: Tetratricopept 61.7 17 0.00036 25.4 4.3 30 267-296 1-30 (34)
142 COG1382 GimC Prefoldin, chaper 61.3 1.5E+02 0.0032 28.1 12.7 103 431-539 3-107 (119)
143 KOG2391 Vacuolar sorting prote 61.0 26 0.00057 38.6 7.3 6 795-800 139-144 (365)
144 PF10191 COG7: Golgi complex c 60.8 4.4E+02 0.0094 33.3 25.7 20 506-525 112-131 (766)
145 PRK00409 recombination and DNA 60.5 74 0.0016 40.1 12.3 57 430-487 497-553 (782)
146 KOG3091 Nuclear pore complex, 60.1 1.7E+02 0.0037 34.2 13.8 25 667-691 469-493 (508)
147 KOG0917 Uncharacterized conser 60.1 71 0.0015 34.2 9.9 18 567-584 49-66 (338)
148 TIGR00634 recN DNA repair prot 59.8 3.8E+02 0.0083 32.3 23.4 45 692-736 347-395 (563)
149 cd02678 MIT_VPS4 MIT: domain c 59.6 83 0.0018 26.9 9.0 61 266-331 5-65 (75)
150 PF03276 Gag_spuma: Spumavirus 59.2 1.9E+02 0.0042 34.1 14.1 16 695-710 151-166 (582)
151 PF00261 Tropomyosin: Tropomyo 58.5 2.5E+02 0.0054 29.8 22.1 66 667-732 166-234 (237)
152 KOG2675 Adenylate cyclase-asso 58.5 3.4E+02 0.0074 31.3 15.7 39 613-651 53-91 (480)
153 PF03999 MAP65_ASE1: Microtubu 58.4 14 0.0003 45.2 5.4 33 566-598 206-238 (619)
154 PRK14086 dnaA chromosomal repl 57.4 2.4E+02 0.0052 34.4 15.2 9 721-729 74-82 (617)
155 KOG4643 Uncharacterized coiled 56.9 5.3E+02 0.011 33.0 32.2 53 669-721 452-507 (1195)
156 KOG0964 Structural maintenance 55.9 5.4E+02 0.012 32.8 29.7 101 438-543 154-271 (1200)
157 PF14938 SNAP: Soluble NSF att 55.8 1.1E+02 0.0025 33.1 11.6 43 124-174 29-71 (282)
158 KOG4552 Vitamin-D-receptor int 55.5 2E+02 0.0043 29.6 11.8 13 663-675 84-96 (272)
159 KOG0612 Rho-associated, coiled 55.2 6.1E+02 0.013 33.2 27.7 28 694-721 752-779 (1317)
160 KOG1125 TPR repeat-containing 54.7 1.8E+02 0.004 34.6 13.1 85 195-279 403-495 (579)
161 COG3096 MukB Uncharacterized p 54.6 5E+02 0.011 32.0 29.4 119 466-596 891-1010(1480)
162 cd02656 MIT MIT: domain contai 53.5 1.1E+02 0.0024 26.0 8.7 62 266-332 5-66 (75)
163 PF09537 DUF2383: Domain of un 52.4 56 0.0012 30.0 7.3 54 676-731 3-56 (111)
164 KOG0917 Uncharacterized conser 52.2 3.4E+02 0.0073 29.3 20.6 29 690-718 110-140 (338)
165 KOG4637 Adaptor for phosphoino 51.9 4E+02 0.0086 30.1 14.4 16 568-583 137-152 (464)
166 TIGR01069 mutS2 MutS2 family p 51.1 1.3E+02 0.0028 37.9 12.2 55 429-484 491-545 (771)
167 PF14712 Snapin_Pallidin: Snap 50.7 1.8E+02 0.0039 25.7 11.6 35 623-657 15-49 (92)
168 PF04100 Vps53_N: Vps53-like, 50.6 4.4E+02 0.0095 30.2 15.7 9 639-647 84-92 (383)
169 KOG1451 Oligophrenin-1 and rel 50.4 3.9E+02 0.0084 32.0 14.6 138 568-728 25-171 (812)
170 KOG1937 Uncharacterized conser 49.6 4.7E+02 0.01 30.3 26.7 23 627-649 460-482 (521)
171 PF05600 DUF773: Protein of un 49.2 5.3E+02 0.012 30.8 18.3 83 616-701 128-215 (507)
172 cd09234 V_HD-PTP_like Protein- 49.2 4.3E+02 0.0092 29.7 28.4 29 567-595 241-269 (337)
173 PF10498 IFT57: Intra-flagella 49.0 4.5E+02 0.0098 29.9 15.4 44 663-706 258-302 (359)
174 cd02684 MIT_2 MIT: domain cont 48.7 1.4E+02 0.003 25.7 8.5 63 266-333 5-67 (75)
175 PRK09343 prefoldin subunit bet 48.2 2.5E+02 0.0053 26.6 11.9 104 431-540 4-109 (121)
176 KOG0964 Structural maintenance 48.1 7.1E+02 0.015 31.9 32.5 53 467-523 747-799 (1200)
177 TIGR01005 eps_transp_fam exopo 47.8 6.6E+02 0.014 31.5 25.6 79 456-539 189-267 (754)
178 COG0497 RecN ATPase involved i 47.6 5.8E+02 0.013 30.7 25.5 35 702-736 357-391 (557)
179 PRK10807 paraquat-inducible pr 47.4 2.5E+02 0.0053 33.9 13.3 65 665-737 471-535 (547)
180 KOG4643 Uncharacterized coiled 47.4 7.3E+02 0.016 31.8 25.5 51 575-626 535-585 (1195)
181 KOG2911 Uncharacterized conser 46.4 5.2E+02 0.011 29.9 21.0 33 567-599 237-269 (439)
182 COG4477 EzrA Negative regulato 46.0 5.8E+02 0.013 30.3 29.4 63 445-520 102-164 (570)
183 PRK12370 invasion protein regu 45.0 2.1E+02 0.0046 34.4 12.6 15 48-62 138-153 (553)
184 KOG0980 Actin-binding protein 44.0 7.7E+02 0.017 31.1 21.9 34 506-539 421-454 (980)
185 KOG4642 Chaperone-dependent E3 43.6 1E+02 0.0023 32.8 8.1 35 266-300 77-111 (284)
186 KOG4286 Dystrophin-like protei 43.5 7.3E+02 0.016 30.8 18.8 47 506-555 82-130 (966)
187 COG3853 TelA Uncharacterized p 42.6 5.7E+02 0.012 29.2 16.1 148 529-717 95-242 (386)
188 cd00179 SynN Syntaxin N-termin 42.2 3.2E+02 0.007 26.3 15.7 34 623-656 3-36 (151)
189 KOG2002 TPR-containing nuclear 42.0 2E+02 0.0044 36.4 11.4 125 49-174 661-798 (1018)
190 KOG2572 Ribosome biogenesis pr 41.8 2.2E+02 0.0048 32.3 10.7 34 566-599 246-279 (498)
191 KOG3771 Amphiphysin [Intracell 41.7 6.3E+02 0.014 29.5 31.9 48 449-496 36-83 (460)
192 PF06008 Laminin_I: Laminin Do 41.7 4.8E+02 0.01 28.1 28.6 39 614-652 148-190 (264)
193 KOG3895 Synaptic vesicle prote 41.6 2E+02 0.0044 32.1 10.2 12 623-634 287-298 (488)
194 PF06552 TOM20_plant: Plant sp 41.4 59 0.0013 33.0 5.8 46 124-174 64-109 (186)
195 PF01920 Prefoldin_2: Prefoldi 41.3 74 0.0016 28.7 6.2 55 487-541 47-101 (106)
196 KOG2002 TPR-containing nuclear 41.1 8.9E+02 0.019 31.0 22.0 23 663-685 776-798 (1018)
197 KOG1941 Acetylcholine receptor 40.9 1.2E+02 0.0027 34.1 8.5 94 196-296 129-235 (518)
198 TIGR02338 gimC_beta prefoldin, 40.8 3E+02 0.0064 25.4 12.2 101 377-479 1-106 (110)
199 KOG0804 Cytoplasmic Zn-finger 40.4 4.2E+02 0.0092 30.7 12.7 81 450-543 371-452 (493)
200 PF15605 Toxin_52: Putative to 40.3 1.1E+02 0.0025 27.8 6.7 82 398-479 5-96 (103)
201 PF05008 V-SNARE: Vesicle tran 40.1 1.1E+02 0.0024 26.2 6.8 36 435-471 7-42 (79)
202 KOG0946 ER-Golgi vesicle-tethe 39.9 8.5E+02 0.019 30.5 26.9 58 149-211 298-357 (970)
203 cd07624 BAR_SNX7_30 The Bin/Am 39.8 4.4E+02 0.0095 27.1 20.2 41 682-725 139-179 (200)
204 KOG1937 Uncharacterized conser 39.6 6.7E+02 0.014 29.2 26.7 19 673-691 448-466 (521)
205 KOG3958 Putative dynamitin [Cy 39.3 5.5E+02 0.012 28.1 14.2 21 566-586 246-266 (371)
206 KOG0162 Myosin class I heavy c 39.2 4.4E+02 0.0095 32.5 13.0 12 121-132 188-199 (1106)
207 cd08915 V_Alix_like Protein-in 39.2 5.9E+02 0.013 28.5 24.2 80 566-647 246-330 (342)
208 PF05823 Gp-FAR-1: Nematode fa 39.1 2.3E+02 0.0051 28.0 9.6 58 498-555 76-137 (154)
209 KOG3523 Putative guanine nucle 38.9 2.3E+02 0.005 34.0 10.7 112 615-729 334-458 (695)
210 PF10481 CENP-F_N: Cenp-F N-te 38.3 5.5E+02 0.012 27.8 17.2 155 430-596 10-188 (307)
211 COG1842 PspA Phage shock prote 38.2 5.1E+02 0.011 27.4 13.1 35 567-601 49-83 (225)
212 PRK04654 sec-independent trans 38.1 3.6E+02 0.0079 28.1 10.9 35 448-482 21-55 (214)
213 PRK04098 sec-independent trans 37.8 1.8E+02 0.004 28.9 8.4 55 448-523 21-75 (158)
214 PF05110 AF-4: AF-4 proto-onco 37.8 1.1E+03 0.024 31.3 18.2 69 377-453 1117-1187(1191)
215 KOG0946 ER-Golgi vesicle-tethe 37.8 9.2E+02 0.02 30.3 25.5 21 575-595 811-831 (970)
216 KOG3895 Synaptic vesicle prote 37.7 2.4E+02 0.0053 31.5 10.0 19 715-733 375-394 (488)
217 PF07888 CALCOCO1: Calcium bin 37.6 8E+02 0.017 29.5 31.1 33 567-599 287-319 (546)
218 COG1340 Uncharacterized archae 37.1 6E+02 0.013 27.9 27.9 22 574-595 162-183 (294)
219 PF04740 LXG: LXG domain of WX 37.0 4.7E+02 0.01 26.7 18.2 13 717-729 174-186 (204)
220 COG1528 Ftn Ferritin-like prot 36.7 3.3E+02 0.0072 27.3 10.1 75 127-202 12-91 (167)
221 PTZ00332 paraflagellar rod pro 36.4 7.8E+02 0.017 29.0 23.0 42 452-493 262-303 (589)
222 KOG0608 Warts/lats-like serine 36.2 2E+02 0.0042 35.0 9.6 97 780-877 173-277 (1034)
223 PRK01919 tatB sec-independent 36.2 1.9E+02 0.0042 29.0 8.3 37 448-484 21-57 (169)
224 PRK09841 cryptic autophosphory 36.1 4.6E+02 0.01 32.8 13.9 87 452-542 258-344 (726)
225 COG1516 FliS Flagellin-specifi 36.1 3.4E+02 0.0075 26.2 9.7 73 263-335 27-100 (132)
226 PF10157 DUF2365: Uncharacteri 36.0 2.6E+02 0.0057 27.5 9.2 35 625-659 98-132 (149)
227 PF03999 MAP65_ASE1: Microtubu 35.9 1.2E+02 0.0026 37.1 8.6 139 502-649 203-353 (619)
228 TIGR03007 pepcterm_ChnLen poly 35.8 7.9E+02 0.017 28.9 25.0 68 464-536 164-231 (498)
229 PF13181 TPR_8: Tetratricopept 35.3 74 0.0016 21.9 4.1 29 268-296 2-30 (34)
230 PF13424 TPR_12: Tetratricopep 35.2 80 0.0017 26.5 5.1 36 125-169 42-77 (78)
231 PF11802 CENP-K: Centromere-as 35.0 6.2E+02 0.013 27.4 14.6 30 678-707 155-184 (268)
232 PF10475 DUF2450: Protein of u 34.5 6.5E+02 0.014 27.5 13.3 142 561-710 9-160 (291)
233 PF04108 APG17: Autophagy prot 34.4 7.8E+02 0.017 28.5 43.1 83 389-478 68-157 (412)
234 PRK11166 chemotaxis regulator 34.3 5.7E+02 0.012 26.8 17.0 118 399-535 17-135 (214)
235 PF13424 TPR_12: Tetratricopep 34.1 2.5E+02 0.0055 23.3 8.0 34 265-298 44-77 (78)
236 PF09432 THP2: Tho complex sub 33.9 86 0.0019 29.8 5.2 23 443-465 107-129 (132)
237 PF04100 Vps53_N: Vps53-like, 33.9 7.7E+02 0.017 28.2 20.3 38 507-548 66-105 (383)
238 cd00632 Prefoldin_beta Prefold 33.4 3.8E+02 0.0081 24.5 10.6 90 451-540 10-101 (105)
239 KOG2196 Nuclear porin [Nuclear 33.3 6.2E+02 0.013 27.0 20.8 125 568-695 72-203 (254)
240 PRK13729 conjugal transfer pil 33.2 5.8E+02 0.013 30.0 12.7 22 683-704 89-110 (475)
241 PRK10869 recombination and rep 33.1 9.4E+02 0.02 29.0 20.9 45 663-707 327-371 (553)
242 PF05478 Prominin: Prominin; 33.1 1.1E+03 0.024 29.9 21.6 108 373-493 188-305 (806)
243 PRK02603 photosystem I assembl 33.1 4.8E+02 0.01 25.6 14.0 39 265-303 111-149 (172)
244 cd07651 F-BAR_PombeCdc15_like 33.1 6E+02 0.013 26.7 21.7 64 670-736 164-227 (236)
245 PF06008 Laminin_I: Laminin Do 32.8 6.5E+02 0.014 27.0 28.0 17 631-647 183-199 (264)
246 PF07851 TMPIT: TMPIT-like pro 32.5 2.8E+02 0.0061 31.1 9.8 34 449-482 6-39 (330)
247 KOG2391 Vacuolar sorting prote 32.0 1.4E+02 0.003 33.2 7.1 11 598-608 44-54 (365)
248 TIGR00606 rad50 rad50. This fa 32.0 1.4E+03 0.031 30.7 44.0 27 34-63 171-197 (1311)
249 KOG0162 Myosin class I heavy c 31.8 4.2E+02 0.0091 32.6 11.4 9 645-653 702-710 (1106)
250 PRK03918 chromosome segregatio 31.6 1.2E+03 0.026 29.7 35.2 21 502-522 452-472 (880)
251 PF10454 DUF2458: Protein of u 31.0 4.3E+02 0.0094 26.1 9.9 114 562-677 22-149 (150)
252 cd00176 SPEC Spectrin repeats, 30.5 5.4E+02 0.012 25.4 19.5 12 569-580 145-156 (213)
253 COG4942 Membrane-bound metallo 30.4 9.1E+02 0.02 28.0 20.0 27 570-596 45-71 (420)
254 cd07685 F-BAR_Fes The F-BAR (F 29.9 7E+02 0.015 26.5 22.5 141 568-712 67-219 (237)
255 PF07889 DUF1664: Protein of u 29.6 3.6E+02 0.0077 25.9 8.7 76 392-474 48-123 (126)
256 KOG4451 Uncharacterized conser 29.5 6.9E+02 0.015 26.3 17.9 24 673-696 102-125 (286)
257 KOG0979 Structural maintenance 29.0 1.4E+03 0.03 29.6 22.7 11 717-727 903-913 (1072)
258 TIGR02284 conserved hypothetic 28.8 1.5E+02 0.0033 28.7 6.4 50 677-726 3-54 (139)
259 KOG2180 Late Golgi protein sor 28.8 1.2E+03 0.026 28.9 23.4 49 499-551 73-123 (793)
260 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.6 5.2E+02 0.011 24.6 14.4 41 452-492 8-48 (132)
261 PF11932 DUF3450: Protein of u 28.6 7.4E+02 0.016 26.4 13.3 122 456-604 23-147 (251)
262 PLN02910 polygalacturonate 4-a 28.6 7.9E+02 0.017 30.0 13.0 33 491-523 180-218 (657)
263 PHA03160 hypothetical protein; 28.6 1.6E+02 0.0035 34.3 7.3 11 527-537 203-213 (499)
264 TIGR00634 recN DNA repair prot 28.5 1.1E+03 0.024 28.4 23.8 25 575-599 271-295 (563)
265 PF04344 CheZ: Chemotaxis phos 28.4 3.1E+02 0.0067 28.7 9.0 33 504-536 92-124 (214)
266 PF00038 Filament: Intermediat 28.2 8.2E+02 0.018 26.7 26.2 259 457-727 4-266 (312)
267 PF13374 TPR_10: Tetratricopep 28.0 1.2E+02 0.0025 21.6 4.3 34 267-300 2-35 (42)
268 smart00035 CLa CLUSTERIN alpha 27.9 2.3E+02 0.005 29.4 7.5 30 463-492 111-140 (216)
269 PRK15313 autotransport protein 27.8 1.5E+02 0.0032 37.6 7.3 12 492-503 425-436 (955)
270 PF02561 FliS: Flagellar prote 27.8 5.1E+02 0.011 24.2 10.5 72 263-334 25-97 (122)
271 PF04849 HAP1_N: HAP1 N-termin 27.6 8.8E+02 0.019 26.9 25.6 212 480-710 73-302 (306)
272 smart00028 TPR Tetratricopepti 27.4 88 0.0019 19.7 3.3 27 269-295 3-29 (34)
273 smart00503 SynN Syntaxin N-ter 27.4 4.7E+02 0.01 23.7 12.2 34 622-655 4-37 (117)
274 PF05659 RPW8: Arabidopsis bro 27.4 3.4E+02 0.0073 26.7 8.5 81 623-712 31-115 (147)
275 cd07601 BAR_APPL The Bin/Amphi 27.2 7.5E+02 0.016 26.0 16.1 71 613-686 59-135 (215)
276 PF13310 Virulence_RhuM: Virul 27.0 7.4E+02 0.016 26.7 11.3 59 485-543 98-156 (260)
277 TIGR01541 tape_meas_lam_C phag 26.9 9.4E+02 0.02 27.0 19.3 57 663-721 144-200 (332)
278 PF14967 FAM70: FAM70 protein 26.9 4.6E+02 0.01 28.7 9.8 22 674-696 177-198 (327)
279 COG4867 Uncharacterized protei 26.8 1E+03 0.022 27.5 14.8 16 584-599 249-264 (652)
280 PRK10929 putative mechanosensi 26.7 1.6E+03 0.035 29.7 26.7 14 466-479 77-90 (1109)
281 PTZ00464 SNF-7-like protein; P 26.7 7.6E+02 0.016 25.8 13.3 27 676-702 123-149 (211)
282 COG4026 Uncharacterized protei 26.5 7.7E+02 0.017 25.9 11.9 21 469-489 136-156 (290)
283 KOG0804 Cytoplasmic Zn-finger 26.4 1.1E+03 0.023 27.5 15.1 55 669-726 391-445 (493)
284 smart00671 SEL1 Sel1-like repe 26.4 1E+02 0.0023 21.3 3.6 31 131-166 3-33 (36)
285 PF06785 UPF0242: Uncharacteri 26.3 9.5E+02 0.02 26.8 15.1 31 444-474 124-154 (401)
286 TIGR03017 EpsF chain length de 26.2 1E+03 0.023 27.3 22.6 38 456-493 166-203 (444)
287 PF03904 DUF334: Domain of unk 26.2 7.9E+02 0.017 25.9 13.6 28 662-689 126-153 (230)
288 PF08238 Sel1: Sel1 repeat; I 26.2 1.9E+02 0.004 20.5 5.1 33 131-166 3-36 (39)
289 KOG1087 Cytosolic sorting prot 26.0 1.1E+03 0.025 27.7 15.8 32 274-305 58-91 (470)
290 PF09385 HisK_N: Histidine kin 26.0 3E+02 0.0064 26.6 7.4 106 579-697 9-124 (133)
291 PRK14011 prefoldin subunit alp 26.0 6.3E+02 0.014 24.7 11.7 48 684-731 84-131 (144)
292 cd07653 F-BAR_CIP4-like The F- 26.0 8E+02 0.017 25.9 19.6 163 559-723 1-190 (251)
293 PF02071 NSF: Aromatic-di-Alan 25.8 28 0.00061 19.3 0.4 12 157-168 1-12 (12)
294 PRK11519 tyrosine kinase; Prov 25.8 9.1E+02 0.02 30.1 14.0 70 461-534 267-336 (719)
295 PF13093 FTA4: Kinetochore com 25.6 6E+02 0.013 26.6 10.4 180 423-631 18-210 (213)
296 COG1722 XseB Exonuclease VII s 25.4 2.3E+02 0.005 24.9 6.1 52 661-712 15-66 (81)
297 cd00176 SPEC Spectrin repeats, 25.4 6.6E+02 0.014 24.8 18.9 38 670-707 139-176 (213)
298 KOG1854 Mitochondrial inner me 25.3 1.3E+03 0.028 28.1 30.8 109 445-555 192-303 (657)
299 PF14782 BBS2_C: Ciliary BBSom 25.1 8.1E+02 0.018 28.6 12.3 41 567-609 304-344 (431)
300 PF07415 Herpes_LMP2: Gammaher 24.7 25 0.00055 38.6 0.1 9 793-801 55-63 (489)
301 PF07011 DUF1313: Protein of u 24.7 4.3E+02 0.0094 23.5 7.5 58 630-702 17-74 (87)
302 TIGR02865 spore_II_E stage II 24.5 1.5E+03 0.032 28.6 15.4 82 626-707 395-477 (764)
303 cd09237 V_ScBro1_like Protein- 24.5 1E+03 0.023 26.7 24.5 31 566-596 253-283 (356)
304 cd07623 BAR_SNX1_2 The Bin/Amp 24.5 8.3E+02 0.018 25.6 20.8 29 568-596 24-52 (224)
305 PF05427 FIBP: Acidic fibrobla 24.4 1.1E+03 0.023 26.9 12.8 33 566-598 230-262 (361)
306 PF09849 DUF2076: Uncharacteri 24.4 1.1E+02 0.0024 32.8 4.8 7 720-726 66-72 (247)
307 cd07664 BAR_SNX2 The Bin/Amphi 24.3 8.8E+02 0.019 25.8 20.1 31 567-597 33-63 (234)
308 COG4942 Membrane-bound metallo 24.3 1.2E+03 0.025 27.2 25.0 27 569-595 96-122 (420)
309 KOG2709 Uncharacterized conser 24.2 3.6E+02 0.0078 31.0 8.7 84 257-343 12-112 (560)
310 PHA03246 large tegument protei 24.2 2.3E+03 0.05 30.7 32.6 91 565-657 1719-1812(3095)
311 PF07777 MFMR: G-box binding p 23.9 1.6E+02 0.0034 30.2 5.5 7 803-809 57-63 (189)
312 PF07111 HCR: Alpha helical co 23.8 1.4E+03 0.031 28.1 33.1 211 456-705 192-415 (739)
313 PF05130 FlgN: FlgN protein; 23.6 6E+02 0.013 23.6 12.1 31 566-596 40-70 (143)
314 PF15254 CCDC14: Coiled-coil d 23.6 1.5E+03 0.033 28.3 21.4 22 522-543 352-373 (861)
315 KOG4367 Predicted Zn-finger pr 23.5 1.9E+02 0.0042 32.9 6.5 43 682-724 281-323 (699)
316 KOG0996 Structural maintenance 23.5 1.8E+03 0.039 29.1 35.5 31 679-709 558-588 (1293)
317 COG1711 DNA replication initia 23.4 2E+02 0.0043 30.1 6.1 37 689-725 23-59 (223)
318 PF10241 KxDL: Uncharacterized 23.2 5.3E+02 0.011 22.9 11.1 25 630-654 12-36 (88)
319 PF05781 MRVI1: MRVI1 protein; 23.2 1.3E+03 0.029 27.5 14.3 97 431-543 169-268 (538)
320 PF07083 DUF1351: Protein of u 23.2 8.7E+02 0.019 25.3 12.3 57 662-724 59-115 (215)
321 cd07648 F-BAR_FCHO The F-BAR ( 23.1 9.3E+02 0.02 25.7 21.9 19 574-592 19-37 (261)
322 PF09789 DUF2353: Uncharacteri 23.0 1.1E+03 0.023 26.4 19.3 35 502-536 79-113 (319)
323 PF13414 TPR_11: TPR repeat; P 22.9 1.3E+02 0.0029 24.3 4.2 30 267-296 3-32 (69)
324 PF13514 AAA_27: AAA domain 22.9 1.8E+03 0.04 29.1 37.1 63 464-526 683-750 (1111)
325 PF00103 Hormone_1: Somatotrop 22.9 5.9E+02 0.013 26.5 9.9 21 502-522 185-205 (214)
326 PF14944 TCRP1: Tongue Cancer 22.8 1.7E+02 0.0037 28.6 5.1 14 861-876 91-104 (195)
327 cd07655 F-BAR_PACSIN The F-BAR 22.7 9.6E+02 0.021 25.7 20.5 163 563-727 5-197 (258)
328 PF09849 DUF2076: Uncharacteri 22.7 6.9E+02 0.015 26.8 10.4 6 640-645 7-12 (247)
329 PRK05683 flgK flagellar hook-a 22.6 1.5E+03 0.033 28.0 14.8 52 626-677 156-211 (676)
330 PF10168 Nup88: Nuclear pore c 22.5 1.6E+03 0.034 28.1 20.6 71 510-583 580-652 (717)
331 TIGR00208 fliS flagellar biosy 22.5 5.3E+02 0.011 24.4 8.6 73 263-335 27-100 (124)
332 PRK01156 chromosome segregatio 22.5 1.7E+03 0.037 28.5 33.6 27 448-474 160-186 (895)
333 KOG0709 CREB/ATF family transc 22.4 2.8E+02 0.0061 32.2 7.7 82 637-722 245-330 (472)
334 PF07139 DUF1387: Protein of u 22.3 7.6E+02 0.016 27.3 10.6 23 566-588 181-203 (302)
335 PF14723 SSFA2_C: Sperm-specif 22.1 3.9E+02 0.0084 26.9 7.6 42 688-729 131-172 (179)
336 PF13176 TPR_7: Tetratricopept 22.0 1.9E+02 0.0041 20.6 4.3 28 269-296 1-28 (36)
337 PRK12715 flgK flagellar hook-a 21.9 1.4E+03 0.03 28.3 14.2 51 627-677 157-207 (649)
338 smart00787 Spc7 Spc7 kinetocho 21.9 1.1E+03 0.024 26.1 18.8 136 372-534 118-257 (312)
339 KOG0391 SNF2 family DNA-depend 21.7 8.7E+02 0.019 32.1 12.0 11 75-85 612-622 (1958)
340 PF05227 CHASE3: CHASE3 domain 21.6 6.5E+02 0.014 23.3 14.1 48 606-653 33-83 (138)
341 COG3750 Uncharacterized protei 21.6 1.9E+02 0.004 25.1 4.6 30 567-596 11-40 (85)
342 PF04740 LXG: LXG domain of WX 21.4 8.6E+02 0.019 24.7 18.5 28 680-707 141-168 (204)
343 PF02646 RmuC: RmuC family; I 21.4 6.4E+02 0.014 27.8 10.3 92 614-705 185-282 (304)
344 COG1704 LemA Uncharacterized c 21.3 8.9E+02 0.019 24.8 11.0 74 629-707 55-134 (185)
345 PHA00489 scaffolding protein 21.2 5.9E+02 0.013 22.7 7.9 44 661-714 21-64 (101)
346 PF08655 DASH_Ask1: DASH compl 21.2 4.7E+02 0.01 22.1 6.8 34 670-703 28-61 (66)
347 PF12761 End3: Actin cytoskele 21.1 5.2E+02 0.011 26.6 8.6 20 506-525 100-119 (195)
348 cd07630 BAR_SNX_like The Bin/A 21.0 9.3E+02 0.02 24.9 19.3 147 566-725 14-177 (198)
349 PRK05685 fliS flagellar protei 21.0 5.6E+02 0.012 24.5 8.5 73 263-335 31-104 (132)
350 PF10267 Tmemb_cc2: Predicted 20.9 1.3E+03 0.028 26.6 14.7 28 569-596 211-238 (395)
351 KOG3208 SNARE protein GS28 [In 20.7 1E+03 0.022 25.1 12.6 74 574-648 55-128 (231)
352 KOG0040 Ca2+-binding actin-bun 20.7 2.3E+03 0.049 29.3 19.4 119 453-592 1994-2127(2399)
353 cd07665 BAR_SNX1 The Bin/Amphi 20.6 1E+03 0.022 25.3 20.1 31 567-597 33-63 (234)
354 PF01031 Dynamin_M: Dynamin ce 20.5 1.1E+03 0.024 25.6 19.3 57 458-527 77-134 (295)
355 PRK14959 DNA polymerase III su 20.5 1.6E+03 0.035 27.5 18.6 10 432-441 162-171 (624)
356 KOG0979 Structural maintenance 20.3 1.9E+03 0.042 28.3 24.8 21 665-685 421-442 (1072)
357 KOG2150 CCR4-NOT transcription 20.2 1.5E+03 0.034 27.1 14.8 179 444-645 16-218 (575)
358 PF09976 TPR_21: Tetratricopep 20.1 2.4E+02 0.0051 27.0 5.9 68 227-295 8-76 (145)
359 cd02680 MIT_calpain7_2 MIT: do 20.1 5.8E+02 0.013 22.1 8.0 64 266-335 5-69 (75)
No 1
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=100.00 E-value=3.3e-100 Score=900.15 Aligned_cols=688 Identities=38% Similarity=0.572 Sum_probs=639.7
Q ss_pred cccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCCCC
Q 002807 18 LAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISP 97 (878)
Q Consensus 18 l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~~ 97 (878)
+++|+|+|.++||.++|.+||..+||+ ..+...++|+++.+||+.+++.. .+.++ .+.+.+||.+|+.|+.|||...
T Consensus 6 ~~~~lK~t~e~d~~~~l~~~i~~~y~~-~~~~~~~~i~~~~~lR~~a~~~~-~~~~~-~~~l~~yy~qL~~l~~r~p~~~ 82 (714)
T KOG2220|consen 6 LPIPLKKTSEVDFLKPLSKLIQLSYGE-SQENRNDAIEKLEKLRNNANGVP-KPSEG-LEVLKRYYGQLCYLESRFPMSE 82 (714)
T ss_pred cCcccccCCccchhhhHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCC-cchhh-hHHHHHHHHHHHHHHHhcCccc
Confidence 899999999999999999999999999 43444599999999999888765 34466 8999999999999999999987
Q ss_pred CCCCccccceeeecCCCCC-CcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhh
Q 002807 98 DKDHINTVMFLWFDAFKQK-QKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA 176 (878)
Q Consensus 98 ~~~~i~~l~F~W~ds~~~~-~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~ 176 (878)
+ ++. . |+|+|+|+.+ .++++.+|.||++|||||||++|+++|+..+|.+++|+|.||++||.|||||.|++.+.
T Consensus 83 ~--~~~-~-F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq~aagaf~~l~~~~- 157 (714)
T KOG2220|consen 83 N--EIE-E-FTWKDAFDSGAKKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQAAAGAFRYLSRDA- 157 (714)
T ss_pred c--ccc-c-eeeeecccCCccceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhcHHh-
Confidence 6 344 4 9999999866 89999999999999999999999999999999999999999999999999999999442
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHH
Q 002807 177 TKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVT 256 (878)
Q Consensus 177 ~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~ 256 (878)
....+++|++.+++.++..+|+||||||||.|++.|++++++||||+.+|..+|.+|++++.. ...+.+.++|+.
T Consensus 158 ----~~~~~~~d~~~~~l~~~~~l~~AqAQec~f~ks~~d~~~~~~iaKis~q~~~fy~~Al~~~~~-~~~~~~~~~w~~ 232 (714)
T KOG2220|consen 158 ----LGVEPLVDLSSLTLVFLRFLMLAQAQECFFYKSLTDNPKPSIIAKLSAQVVLFYEEALKAQIG-ARADRITKEWLT 232 (714)
T ss_pred ----cCcccccccCHHHHHHHHHhhHHhhchheeehhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH-hhhcccchhHHH
Confidence 136889999999999999999999999999999999999999999999999999999999987 456788999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002807 257 HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRV 336 (878)
Q Consensus 257 ~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~I 336 (878)
++..|..+|.++++|+++..+++.+++|++|+||+.+...|.+|.+...+... .+....++|...+++++||||||
T Consensus 233 ~~~~k~~~~~~v~~~~~~~~~~e~~~~ge~i~~l~~~~~~l~~Aqk~~~~~~~----~~~~~~~~~~~~lk~a~kdNdFI 308 (714)
T KOG2220|consen 233 LVAAKFARFAGVAYYYQSLFLHEKSKDGEAIARLQLSLLMLSEAQKCSFGEFT----DVIESLSSLEKALKEAKKDNDFI 308 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccch----hHhhhhhHHHHHHHhhhcccchh
Confidence 99999999999999999999999999999999999999999999888765322 23334488999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccccccCCccchhhhHhhhhhccCChHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 002807 337 YLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKE 416 (878)
Q Consensus 337 Y~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~~~~~dlF~~LvP~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~ 416 (878)
||++||+..+||+|+++.||||+++..+.....++||+.|||+.||++++.|+|++++++|..+++++++|+.++.+|.+
T Consensus 309 yhe~vp~~~~l~~~~~~~~vkp~~~~~l~~~~~~~lF~~lvp~~v~~a~s~yse~ka~ll~~~~~~~~~~~q~l~~~l~s 388 (714)
T KOG2220|consen 309 YHERVPKVSELPPLKAAQLVKPLPWAVLLPSKAGDLFASLVPVEVAEALSAYSEEKADLLRESIARLREANQLLNSVLAS 388 (714)
T ss_pred hhcccccccccCCcchhHhhcCCCcccccchhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999988887788999999999999999999999999999999999999999999999
Q ss_pred cCC-chHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCC
Q 002807 417 MDL-PDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRW 495 (878)
Q Consensus 417 l~L-P~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W 495 (878)
++| |..+..+++...+|+++.+++..++. |+..+...++.|.++.+++++++++++++|++|+..|..+|.++|.+|
T Consensus 389 ~~l~p~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~l~~l~~~~~~~l~~~~~~l~~ea~~~~~lr~~~~~~~ 466 (714)
T KOG2220|consen 389 LNLDPLALSDLSGNKSLPESFKEKSAAVRR--GLSNLQQELSELRELKKKVREILDEIEEALDEEAALDNKLRAKLGQRW 466 (714)
T ss_pred hccChhhhhhhhcccccchhhhhhHHHHhh--hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc
Confidence 999 99999999988999999999999965 999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHH
Q 002807 496 TRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALK 573 (878)
Q Consensus 496 ~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr 573 (878)
+|.+|.+++..++.+++++++.|+.|...|..+++.++.|..++.+|+ ..+|...||+.+.+ ++.+.++.+.+++
T Consensus 467 ~~~~s~~~~~~~~~e~~k~~~~l~~a~~~d~~~~~~~~~~~~~~~ll~~~~~e~~~~lp~~~~~---~~~~~~~~~~~~k 543 (714)
T KOG2220|consen 467 TRTRSSELTLALYEELEKLREVLEPAKAADVQLKKAFEAHKKNIRLLSLPPPELQPSLPSLDGP---LNPNSDEIVRQLK 543 (714)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcchhhhcCCCchhhhhcCCCCCC---CCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 56699999998743 4456678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCCh-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 574 QSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSY-EDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEF 652 (878)
Q Consensus 574 ~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~-e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f 652 (878)
..+++|++++.+|..+..+++..+..|||++.|+.+.+.+ +++|.+++.||++++..|.+|+.+|+.++.+|+..+..|
T Consensus 544 ~~l~~~~e~k~~r~~L~~~l~~~i~~ddi~~sl~~~~~~~e~dl~~~~l~k~~~l~~~i~~nv~~q~~~l~~~~~~~~~~ 623 (714)
T KOG2220|consen 544 GYLDDLEELKAEREKLEGDLKVDIFKDDILNSLAIHGGIKEEDLFVSELGKFDPLKWLIHQNVVKQESLLGEIQAANQEF 623 (714)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhcccchhhhhcccccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754 789999999999999999999999999999999999999
Q ss_pred HHhhhch-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002807 653 SAIFNLE-DYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQR 727 (878)
Q Consensus 653 ~~~~~~~-~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~ 727 (878)
...++.. ....+|+.+++.|..||+.|+|+..++.+|++||++|+.++.++.++|.+|+.+|+.|++.++..+..
T Consensus 624 ~~~~~~~~~~~~~re~~l~~L~~a~~~~~el~~~~~~g~~fY~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 699 (714)
T KOG2220|consen 624 SKERSFLSPSSKKREKLLSTLAAAYDSYRELSKKLSEGTEFYNDLTNRLVNLANRVSDAGFARSTEKNKLLRPLSL 699 (714)
T ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhchhhhcchhhhccccCcccc
Confidence 9888753 44555999999999999999999999999999999999999999999999999999999999776554
No 2
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=100.00 E-value=1.4e-77 Score=668.41 Aligned_cols=351 Identities=35% Similarity=0.574 Sum_probs=324.6
Q ss_pred cccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCC
Q 002807 16 IMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPI 95 (878)
Q Consensus 16 ~~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~ 95 (878)
+||+||+|+|.+|||.++|++||.++|++ +++.|++||++|++||+++++. +.++++ +++|.+||.+|+.|+.|||
T Consensus 1 ~~l~ip~K~t~~vd~~~~l~~~I~~~y~~-~~~~~~~dl~~l~~lR~~~~~~-~~~~~~-~~~l~~Yy~~L~~l~~rfp- 76 (355)
T cd09241 1 NLLSIPFKRTLPVDLKDALRNYISNHYFQ-TPSSFEDDLAEIDKLRNDAINP-EPSVNG-LSLLKEYYAQLVVLSKKFP- 76 (355)
T ss_pred CcCccCCCcCCcCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhCC-CCChhH-HHHHHHHHHHHHHHHhcCC-
Confidence 58999999999999999999999999998 7899999999999999998876 557788 9999999999999999999
Q ss_pred CCCCCCccccceeeecCCCCC--CcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHh
Q 002807 96 SPDKDHINTVMFLWFDAFKQK--QKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRD 173 (878)
Q Consensus 96 ~~~~~~i~~l~F~W~ds~~~~--~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~ 173 (878)
+ .+ |.|+|+|+|+++ .++++.++.||++|||||+|++||++|.+++|.+++|+|.||++||+|||||+||++
T Consensus 77 ~---~~---i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~ 150 (355)
T cd09241 77 D---DQ---LEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQ 150 (355)
T ss_pred C---cC---CceeeecccCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 13 669999999753 578999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHh
Q 002807 174 NAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKA 253 (878)
Q Consensus 174 ~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~ 253 (878)
++ .+.. .++.||++++|.+|..|||||||||||+||+.+++++++|||||++|+.+|++|.+.+.. ++.++++
T Consensus 151 ~~--~~~~--~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~k~sliAKLa~qv~~~Y~~a~~~l~~---~~~i~~~ 223 (355)
T cd09241 151 HL--LPTL--SPPPDLDENTLKALESLMLAQAQECFWQKAISDGTKDSLIAKLAAQVSDYYQEALKYANK---SDLIRSD 223 (355)
T ss_pred hc--cccc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc---CCcccHH
Confidence 94 3211 488999999999999999999999999999999999999999999999999999999973 4568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002807 254 WVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKEN 333 (878)
Q Consensus 254 w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kdN 333 (878)
|..+|++|..||.|+||||+|..+.++++||++||||+.|...++++.+.+++....+.+++..+.+.|++.|++++|||
T Consensus 224 W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~l~~~i~~~l~~aekdN 303 (355)
T cd09241 224 WINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAACKEALKEARYGNKAVLEDLQGLKDIVKESLKRAERDN 303 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999887666666677889999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCccccccCCccchhh--hHhhhhhccCChHHHH
Q 002807 334 DRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDA--SKEKMFASLVPDSSAK 383 (878)
Q Consensus 334 d~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~~--~~~dlF~~LvP~~V~e 383 (878)
|+||||+||+.++||+|+++.|||+++++++..+ .+.|||.+|||++||+
T Consensus 304 d~IY~e~VP~~~~L~~i~~~~~vk~~~~~~~~~~~~~~~~lF~~lvP~~v~~ 355 (355)
T cd09241 304 DLIYLQPVPPASELPPIKPASMVKAIVPPELEEGSKLGKPLFKDLLPYGVHE 355 (355)
T ss_pred CeeCCcCCCCcccCCCCCCcccccccCchhhcccccccchHHHhccCHHhcC
Confidence 9999999999999999999999999999876532 4789999999999985
No 3
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=100.00 E-value=1.4e-76 Score=657.64 Aligned_cols=350 Identities=30% Similarity=0.448 Sum_probs=318.2
Q ss_pred cccccccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHh
Q 002807 12 ATTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIET 91 (878)
Q Consensus 12 ~~~~~~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~ 91 (878)
+|.-|||+||+|+|.+|||.++|++||.++|++ +++.|++||++|++||+++++. ..+.++ ++.|.+||.+|+.|+.
T Consensus 3 ~~~~p~l~iplK~t~~vd~~~~L~~~I~~~y~~-~~~~~~~~l~~l~~LR~~~~~~-~~~~~~-~~~l~~Yy~qL~~l~~ 79 (361)
T cd09239 3 VPRLPMLWLQLKSSGEFTFQPALKKYILENYGE-DPELYSEELKSLEQLRQEAVNP-PRDFEG-CSVLKRYYGQLHLLQS 79 (361)
T ss_pred CCCCCccccCCCCCCCCchHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhccC-CCChHH-HHHHHHHHHHHHHHHh
Confidence 455699999999999999999999999999998 7899999999999999998864 334678 9999999999999999
Q ss_pred cCCCCCCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHH
Q 002807 92 RFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYL 171 (878)
Q Consensus 92 rfp~~~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l 171 (878)
|||++.+. ++. |.|+|+|+|+ +.+++++++.||++||||||||+||++|+.++|.+++|+|.||++||+|||||+||
T Consensus 80 rfp~~~~~-~~~-v~F~W~d~~~-~~~~~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l 156 (361)
T cd09239 80 RFPMGAGQ-EAA-VPFTWTDIFS-GSEVTHEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYL 156 (361)
T ss_pred cCCCCccc-ccc-ceeeeecccC-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99988532 344 7899999997 78899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCC-----
Q 002807 172 RDNAATKASVGSSTT-VDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAP----- 245 (878)
Q Consensus 172 ~~~~~~~~~~~~~~~-~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~----- 245 (878)
+++++ +.++ +||++++|.+|..|||||||||||+||+.++++++||||||++|+++|++|++.+.+..
T Consensus 157 ~e~~~------~~~~~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~ 230 (361)
T cd09239 157 REHYP------QVYGAVDMSSQLLSFNYSLMLAQAQECLLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKI 230 (361)
T ss_pred HHhcc------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99952 2223 59999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHH
Q 002807 246 LKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAA--AQLLDAISKLEANLN 323 (878)
Q Consensus 246 ~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~--~~~~~~~~~l~~~i~ 323 (878)
+...++++|..||++|.+||.|+||||+|.++.++++||++||||+.|...++++.+..++.. ..+.+.++.+.+.|+
T Consensus 231 ~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l~~~i~ 310 (361)
T cd09239 231 ILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEAIKNAKGQPDTVNLQEALSFTMDVIG 310 (361)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 245789999999999999999999999999999999999999999999999999987766542 246788999999999
Q ss_pred HHHHHHHhcccccccccCCCCCCCCCCCCCccccccCCccch-hhhHhhhh
Q 002807 324 RNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVL-DASKEKMF 373 (878)
Q Consensus 324 ~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~-~~~~~dlF 373 (878)
+.|++++||||||||++||+.++||+|+++.|||++|+.+.. ...|.|||
T Consensus 311 ~~l~~aekDNd~IYhe~VP~~~~L~~i~~~~~vk~~p~~~~~~~~~g~d~f 361 (361)
T cd09239 311 GKRNSAKKENDFIYHEAVPKLDTLQAVKGANLVKGIPFSPTDPEVCGPDIF 361 (361)
T ss_pred HHHHHHhcccCceeecCCCChhhcCCCcCccccccCCCCcccccccCCCCC
Confidence 999999999999999999999999999999999999998752 23678888
No 4
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=100.00 E-value=2.2e-76 Score=657.18 Aligned_cols=347 Identities=57% Similarity=0.892 Sum_probs=321.0
Q ss_pred ccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCCC
Q 002807 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPIS 96 (878)
Q Consensus 17 ~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~ 96 (878)
||+||+|+|.+|||.++|++||.++|++.+++.|++||.+|++||+++++....++++ ++.|.+||.+|+.|+.|||++
T Consensus 1 ~l~ip~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~~LR~~~~~~~~~~~~~-~~~l~~Yy~~L~~l~~rfp~~ 79 (353)
T cd09246 1 MLSIHRKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQQLRSEVRTLQEKHAAS-RELLLRYYRALCAVESRFPIS 79 (353)
T ss_pred CCCCCCCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHhhcCCCCChhH-HHHHHHHHHHHHHHHccCCCC
Confidence 7899999999999999999999999997578999999999999999988765445567 999999999999999999998
Q ss_pred CCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhh
Q 002807 97 PDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA 176 (878)
Q Consensus 97 ~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~ 176 (878)
.++.++. |.|+|+|+|+++.++++.++.||++|||||+||+||++|..++|.+++|+|+||++||+|||||+||++++
T Consensus 80 ~~~~~~~-v~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~e~~- 157 (353)
T cd09246 80 EESGHAR-VSFSWYDAFRPHRKATQANVHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLRDKV- 157 (353)
T ss_pred ccccccc-ceeEeeccCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 6543455 88999999986689999999999999999999999999999999999999999999999999999999994
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHH
Q 002807 177 TKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVT 256 (878)
Q Consensus 177 ~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~ 256 (878)
.+.+...+++||++++|.+|..+||||||||+|+||+.+++++++|||||++|+++|++|.+.+++....+.++++|..
T Consensus 158 -~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~ 236 (353)
T cd09246 158 -SGKTGGFRTPDLTAECLGMLESLMLAQAQECFYEKAVADGKSPAVCSKLAKQARSYYEEALEALDSPPLKGHFDKSWVA 236 (353)
T ss_pred -cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHH
Confidence 4434456789999999999999999999999999999999999999999999999999999999987777889999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHHHHHHHHHHhcccc
Q 002807 257 HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAA-QLLDAISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 257 ~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~-~~~~~~~~l~~~i~~~l~~a~kdNd~ 335 (878)
||++|..||.|+||||+|.++.++++||++||||+.|.+.++++.+..++... .+.+.++.+.+.|+..+++++|||||
T Consensus 237 ~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~k~~~~~~~~~~~~~~~~l~~~v~~~l~~aekdNd~ 316 (353)
T cd09246 237 HVQLKAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASDALAEARKQAKGVNGDELIEAVSELEQVINELLERAEKENDC 316 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999877665432 57889999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCccccccCCccchhh
Q 002807 336 VYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDA 367 (878)
Q Consensus 336 IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~~ 367 (878)
|||++||+.++||+|+++.|||+++++++.+.
T Consensus 317 IY~~~VP~~~~Lp~i~~~~~vk~i~~~~~~~~ 348 (353)
T cd09246 317 VYLDRVPAPSDLPPLGAASMVKPAAPPAELDA 348 (353)
T ss_pred cccCCCCCcccCCCCCCcccccCCCCcchhhc
Confidence 99999999999999999999999999887654
No 5
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=100.00 E-value=3.5e-74 Score=638.44 Aligned_cols=336 Identities=32% Similarity=0.505 Sum_probs=308.6
Q ss_pred ccccccCCCCCCCCCChHHHHHHHhhhcC--CcchhhHHHHHHHHHHHHHHccc-CCCCCchhHHHHHHHHHHHHHHHHh
Q 002807 15 NIMLAIYEKKTSSIDLYRPLRNYISLTYS--EREAFNLEDDLETVKQLRSDVER-VPDPTPSTRRDLLQNYFKALCLIET 91 (878)
Q Consensus 15 ~~~l~iplK~t~~vd~~~~L~~~I~~~y~--~~~~~~~~~dl~~l~~lR~~~~~-~~~~~~~~~~~~l~~Yy~~L~~l~~ 91 (878)
++||+||+|+|.+|||.++|++||.++|+ + +++.|++||++|++||++++. ..+.++++ ++.|.+||.+|+.|+.
T Consensus 1 ~~~l~iplK~t~~vd~~~~l~~~I~~~y~~~~-~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~-~~~l~~Yy~qL~~l~~ 78 (346)
T cd09240 1 ASFISVPLKKSSEVDLVKPLEKFIKNTYSSGE-EQADYKEAIKELNKLRNNAVCRPLDKHESS-LELLLRYYDQLCAIEP 78 (346)
T ss_pred CCeeeccCcCCCcCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHhhcCCCCcchhH-HHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999 6 789999999999999998764 34556778 9999999999999999
Q ss_pred cCCCCCCCCCccccceeeecCCCCC------CcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHH
Q 002807 92 RFPISPDKDHINTVMFLWFDAFKQK------QKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAA 165 (878)
Q Consensus 92 rfp~~~~~~~i~~l~F~W~ds~~~~------~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AA 165 (878)
|||.++.. +. |.|+|+|+|+.+ ..++++++.||++|||||+|++||++|..++|.+++|+|.||++||+||
T Consensus 79 rfp~~~~~--~~-v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AA 155 (346)
T cd09240 79 KFPFSESQ--IQ-VTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAA 155 (346)
T ss_pred cCCCCccc--cc-ceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 99988653 44 779999999632 4578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCC
Q 002807 166 GAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAP 245 (878)
Q Consensus 166 G~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~ 245 (878)
|||+||++++ .+.....+++||++++|.+|..|||||||||||+||+.+++++++|||||++|+++|++|.+.+....
T Consensus 156 G~F~~l~e~~--~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~ 233 (346)
T cd09240 156 GIFNHLKETV--LSALQQEPTPDLSPDTLSALSALMLAQAQEVFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQRED 233 (346)
T ss_pred HHHHHHHHhc--cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999994 33334578899999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 002807 246 LKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRN 325 (878)
Q Consensus 246 ~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~ 325 (878)
..+.++++|..+|++|..||.|+|+||+|.++.++++||++||||+.|.+.++++.+.++.. .+++.+.+.|++.
T Consensus 234 ~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~~-----~~~~~l~~~i~~~ 308 (346)
T cd09240 234 VRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGEY-----VDVKDFAAKISRA 308 (346)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcch-----hHHHHHHHHHHHH
Confidence 77789999999999999999999999999999999999999999999999999998764432 1477899999999
Q ss_pred HHHHHhcccccccccCCCCCCCCCCCCCccccccCCc
Q 002807 326 LDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMN 362 (878)
Q Consensus 326 l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~ 362 (878)
|++++|||||||||+||+.++||+|+++.|||++|++
T Consensus 309 l~~aekDNd~IY~e~VP~~~~L~~i~~~~~vk~~p~~ 345 (346)
T cd09240 309 LTAAKKDNDFIYHDRVPDVKSLPPIGKAALAKPTPVN 345 (346)
T ss_pred HHHHhhccCeEeccCCCCchhccCCcCcccccCCCCC
Confidence 9999999999999999999999999999999999875
No 6
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=100.00 E-value=1.2e-74 Score=655.27 Aligned_cols=372 Identities=39% Similarity=0.596 Sum_probs=320.5
Q ss_pred cccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCC
Q 002807 16 IMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPI 95 (878)
Q Consensus 16 ~~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~ 95 (878)
|||+||+|+|++|||.++|++||.++|++ +++.|+++|++|+.||+++++..+.+.++ ++.|.+||.+|+.|+.|||.
T Consensus 1 ~~~~lplK~t~~vd~~~~l~~~i~~~y~~-~~~~~~~~l~~l~~lR~~~~~~~~~~~~~-~~~l~~Y~~~L~~l~~~~p~ 78 (377)
T PF03097_consen 1 PMLSLPLKKTKEVDLKKPLKKYISSHYGE-DPDSFDEDLKELDKLRQDARNPQSPSESG-LKLLEEYYPQLESLEKRFPS 78 (377)
T ss_dssp ---------BEEE-CHHHHHHHHHHHCSS-CCHCCHHHHHHHHHHHHHHHTSS-SSHHH-HHHHHHHHHHHHHHCCCSCS
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhccCCCchhH-HHHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999999999988 78899999999999999998754556567 99999999999999999984
Q ss_pred CCCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhh
Q 002807 96 SPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNA 175 (878)
Q Consensus 96 ~~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~ 175 (878)
+ .++ |.|+|+|+|+++++++++++.||++|||||+|++|+++|...+|.+++|+|.||++||+|||||+||++++
T Consensus 79 ~----~~~-i~F~W~d~~~~~~~~~~~~~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~ 153 (377)
T PF03097_consen 79 D----QIQ-ISFTWSDSLSTGKPVSQSSLAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENF 153 (377)
T ss_dssp S----CCT-T-EEEE-TTSTTSEEEESSHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred c----cce-eeEeeeccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 444 77999999977889999999999999999999999999999999999999999999999999999999993
Q ss_pred hccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHH
Q 002807 176 ATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWV 255 (878)
Q Consensus 176 ~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~ 255 (878)
...++.||++++|.+|.++||||||||+|+||+.+++++++|||||++|+++|++|.+.+........+++.|.
T Consensus 154 ------~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~ 227 (377)
T PF03097_consen 154 ------KDSPSPDLSPEVLSALSNLMLAQAQECFYEKAIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWR 227 (377)
T ss_dssp ------SS-SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHH
T ss_pred ------cccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHH
Confidence 26788899999999999999999999999999999999999999999999999999999998876667899999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002807 256 THVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKG--AAAQLLDAISKLEANLNRNLDRAVKEN 333 (878)
Q Consensus 256 ~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~--~~~~~~~~~~~l~~~i~~~l~~a~kdN 333 (878)
.+|.+|..||.|+|+||+|.++.++++||++||||+.|...++++.+..+. ....+.+.++.+.+.|+..+++++|||
T Consensus 228 ~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdN 307 (377)
T PF03097_consen 228 SYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLAKKCSKSSSLQDDLKSLLDQIQEKLEKAEKDN 307 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCCCHSCCSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999877653 334567789999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCccccccCCccchh---hhHhhhhhccCChHHHHHHHhhHHHHHHHHHHHH
Q 002807 334 DRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLD---ASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQA 400 (878)
Q Consensus 334 d~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~---~~~~dlF~~LvP~~V~ea~s~Y~e~k~~lvr~~~ 400 (878)
|+|||++||+..+||+++++.|||+++++++.. ..+.|+|.+|||++|+++.+.|+||++++||+++
T Consensus 308 d~Iy~e~VP~~~~L~~~~~~~~vk~~~~~~~~~~~~~~~~dlF~~lvP~~v~~a~s~y~e~~~~~~~~~~ 377 (377)
T PF03097_consen 308 DFIYHEPVPSESELPPIKPASMVKPIPPPEFTSPESVKGPDLFKKLVPLSVHEASSRYSERKAELVRDEI 377 (377)
T ss_dssp HHTT--S--SCGGSGGS-SSSTT----HHCCHCCHHHHHCHTTTTC--HHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccccccCCCcccccccccccccCCCCCccccccccccccchHHhcCCHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999998864 3678999999999999999999999999999875
No 7
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=100.00 E-value=8.8e-74 Score=635.71 Aligned_cols=335 Identities=30% Similarity=0.470 Sum_probs=310.3
Q ss_pred ccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCCC
Q 002807 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPIS 96 (878)
Q Consensus 17 ~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~ 96 (878)
||+||+|+|.+|||.++|++||.++|++ +++.|++||++|++||+++++... ++++ ++.|.+||.+|+.|+.|||++
T Consensus 1 ~l~lplK~t~~vd~~~~L~~~I~~~y~~-~~~~~~~~l~~l~~lR~~~~~~~~-~~~~-~~~l~~Yy~qL~~l~~rfp~~ 77 (348)
T cd09242 1 LISLPLKDTEEVDWKKPLSSYLKRSYGS-STFYYEEEIAEFDRLRQDANGVLA-DETG-RDLLYKYYGQLELLELRFPFN 77 (348)
T ss_pred CCCCCCCcCCccChHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhcCCCC-CHHH-HHHHHHHHHHHHHHHhhcCCC
Confidence 7899999999999999999999999998 789999999999999999987544 6678 999999999999999999998
Q ss_pred CCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhh
Q 002807 97 PDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA 176 (878)
Q Consensus 97 ~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~ 176 (878)
.. .++ |.|+|+|+|+++++++++++.||++|||||+|++|+++|..++|.+++|+|.||++||+|||||+||+++++
T Consensus 78 ~~--~~~-v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~ 154 (348)
T cd09242 78 NK--ELK-VDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFL 154 (348)
T ss_pred Cc--ccc-ceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54 344 779999999878899999999999999999999999999999999999999999999999999999999952
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHHHhhcCCC--CCcch
Q 002807 177 TKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKG---STPGVCAKISRQVGLYYEEALGALTVAPL--KDHFD 251 (878)
Q Consensus 177 ~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~---~k~~liAKLA~qv~~~Y~~a~~~l~~~~~--~~~~~ 251 (878)
+.++.||++++|.+|..|||||||||+|+||+.++ +++++|||||++|+++|++|.+.+..... .+.++
T Consensus 155 ------~~ps~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~~~~k~sliaKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~ 228 (348)
T cd09242 155 ------HAPSVDLQQENVKFLVKLMLAQAQEIFLLKLINGDDAQKKASLISKLASATANLYESCVEFLKEIQEKGISYGD 228 (348)
T ss_pred ------CCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhccccccccccC
Confidence 46789999999999999999999999999999998 89999999999999999999999986433 23589
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchh-------HHHHHHHHHHHHHHHH
Q 002807 252 KAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAA-------AQLLDAISKLEANLNR 324 (878)
Q Consensus 252 ~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~-------~~~~~~~~~l~~~i~~ 324 (878)
++|..+|++|..||+|+||||+|.++.++++||++||||+.|...++++.+..+... ..+.++++.+.+.|++
T Consensus 229 ~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 308 (348)
T cd09242 229 PKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEANPQKLSLKASAGDAAYALNDDFKGQKDTVEE 308 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987543222 3578899999999999
Q ss_pred HHHHHHhcccccccccCCCCCCCCCCCCCccccccCCcc
Q 002807 325 NLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNE 363 (878)
Q Consensus 325 ~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~ 363 (878)
.|++++||||||||++||+..+||+|+++.|||++|+++
T Consensus 309 ~l~~aekDNd~IY~~~VP~~~~L~~i~~~~~vk~~p~~~ 347 (348)
T cd09242 309 KLKELEKDNDFIYHDIVPSEVTLPSIKPLDAAKPIPIEE 347 (348)
T ss_pred HHHHHhcccCeeccCCCCCccccCCCCccccCCCCCCcc
Confidence 999999999999999999999999999999999999865
No 8
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=100.00 E-value=2.3e-69 Score=592.11 Aligned_cols=338 Identities=29% Similarity=0.446 Sum_probs=305.3
Q ss_pred ccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCCC
Q 002807 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPIS 96 (878)
Q Consensus 17 ~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~ 96 (878)
||+||+|+|++|||.++|++||.++|++ +++.|++||.+|++||+++++. ..+++| +++|.+||.||+.|+.|||.+
T Consensus 1 mi~l~lK~T~~vd~~~~L~~yI~~~Y~e-~~~~y~~~l~~l~~LR~~~~~~-~~~~~g-~~~L~~YY~qL~~le~RFp~~ 77 (350)
T cd09244 1 MIPLGLKETKEIDFMEPFKDFILEHYSE-DPSLYEDEIADFTDLRQAMRTP-SRDEAG-IELLFEYYNQLYFVERRFFPP 77 (350)
T ss_pred CCCCCCCcCCcCChHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhCC-CCChhH-HHHHHHHHHHHHHHHhcCCCc
Confidence 8999999999999999999999999998 8899999999999999998774 346788 999999999999999999877
Q ss_pred CCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhh
Q 002807 97 PDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA 176 (878)
Q Consensus 97 ~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~ 176 (878)
.. ++. |.|+|+|+|+ +.+++++++.|||+||||||||+||++|+.++|.+++|+|.||++||+|||+|+||++++.
T Consensus 78 ~~--~~~-v~F~W~Ds~~-~~~~~q~sl~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l~e~~~ 153 (350)
T cd09244 78 DR--SLG-IYFHWYDSLT-GVPSVQRSVAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLRENFS 153 (350)
T ss_pred cc--ccc-ceeeeecccC-CCccccccHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 54 344 7799999996 7899999999999999999999999999999999999999999999999999999999952
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccH-----HHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 002807 177 TKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKG-STPGV-----CAKISRQVGLYYEEALGALTVAPLKDHF 250 (878)
Q Consensus 177 ~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~-~k~~l-----iAKLA~qv~~~Y~~a~~~l~~~~~~~~~ 250 (878)
+.++.||++++|.+|..|||||||||||+|++.++ +|+++ |||||++|+++|++|.+.++...+++.+
T Consensus 154 ------~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~~k~~~~~~~~lAklA~qv~~~Y~~a~~~~~~~~~~~~i 227 (350)
T cd09244 154 ------NAPSMDLSPEMLEALIKLMLAQAQECVFEKLVLPGEDSKDIQACLDLAQEAAQVSDCYSEVHKLMNQEPVKDYI 227 (350)
T ss_pred ------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 68899999999999999999999999999999998 88888 9999999999999999999877788889
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcC---CCch--hHHHHHHHHHHHHHHHHH
Q 002807 251 DKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKS---PKGA--AAQLLDAISKLEANLNRN 325 (878)
Q Consensus 251 ~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~---~k~~--~~~~~~~~~~l~~~i~~~ 325 (878)
+++|+.+|++|.+||+|+||||+|+.+.+.+++|++||||+.|....+++.+. +|.. ...+.+.++...+.+..+
T Consensus 228 ~~~W~~~v~~K~~~f~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a~~~~~~c~~~~~~~~l~~~l~~~~~~~~~~ 307 (350)
T cd09244 228 PYSWISLVEVKSEHYKALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEALRLHRMCRFLRNVDSLQEVLKEAHDRSLNK 307 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999874 4433 356778899999999999
Q ss_pred HHHHHhcccccccccCCCCCCCCCCCCCccccccC-CccchhhhHhhhh
Q 002807 326 LDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMA-MNEVLDASKEKMF 373 (878)
Q Consensus 326 l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~-~~~~~~~~~~dlF 373 (878)
+..+++||||+|++.+|+ |.+....|+.+ .|++....++|+|
T Consensus 308 ~~~~~~~~d~~~~~~~p~------~~~~~~~~~~~~~p~~~~~~~~d~f 350 (350)
T cd09244 308 YSSLEEEDDFSDALDAPD------IQAKTKQQLEIIPPDFTQVKVKDLF 350 (350)
T ss_pred HHhhccccchhhccccCC------ccccccccccccCCCCCCCcCCCCC
Confidence 999999999999988765 56677777643 3455444567776
No 9
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=100.00 E-value=1.1e-65 Score=560.80 Aligned_cols=336 Identities=28% Similarity=0.451 Sum_probs=291.0
Q ss_pred ccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCCC
Q 002807 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPIS 96 (878)
Q Consensus 17 ~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~ 96 (878)
||+||+|+|.+|||.++|++||.++|++ +++.|++||.+|++||+++++ ...++++ ++.|.+||.||+.|+.|||.+
T Consensus 1 mi~lplK~T~~vDl~~pL~~yI~~~Y~q-~~~~y~~dl~~l~~LR~~~~~-~~~~~sg-le~L~~YY~qL~~Le~RFp~~ 77 (384)
T cd09248 1 MIPLGLKETKELDLPTPLKELISEHFGE-DGTSYEAEIRELEDLRQAMRT-PSRSEAG-LELLMAYYNQLCFLDARFFPP 77 (384)
T ss_pred CCCCCCCcCCcCChHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhcC-CCCChhH-HHHHHHHHHHHHHHHhcCCCC
Confidence 8999999999999999999999999998 789999999999999999654 4557788 999999999999999999987
Q ss_pred CCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhh
Q 002807 97 PDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA 176 (878)
Q Consensus 97 ~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~ 176 (878)
... +. |.|+|+|+|+ +.+++++++.|||+||||||||+||++|+.++|.+++|+|.||++||+|||||+||++++.
T Consensus 78 ~~~--~~-v~FtW~Daf~-~~~~~q~sl~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~ 153 (384)
T cd09248 78 AKS--LG-LFFHWYDSLT-GVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFS 153 (384)
T ss_pred ccc--cc-ceeeeeccCC-CCccccccHHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 553 44 7799999996 6789999999999999999999999999999999999999999999999999999999942
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 002807 177 TKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTI-------AKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDH 249 (878)
Q Consensus 177 ~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~-------~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~ 249 (878)
+.+++||++++|.+|..|||||||||||+|++ .+++++++|||||+||+++|++|++.+.....++.
T Consensus 154 ------~~Ps~Dms~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~d~~k~~~iAKlAaQvs~~Y~~a~~~~~~~~~~~~ 227 (384)
T cd09248 154 ------NAPSPDMSTASLSMLEQLMVAQAQECIFEGLLLPLLATPQDFFAQLQLAQEAAQVAAEYRLVHRTMAQPPVRDY 227 (384)
T ss_pred ------cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 67899999999999999999999999999999 77889999999999999999999999998888889
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhHhhhhh-----------------------------------hchHHHHHHHHHHH
Q 002807 250 FDKAWVTHVQLKAALFYAEACYRYSLELHEK-----------------------------------EEIAEEIARLKSGI 294 (878)
Q Consensus 250 ~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~-----------------------------------~~~GeaIa~L~~A~ 294 (878)
++++|+.+|++|..||.|+||||+|+++.+. .+.|+ |+|+.|.
T Consensus 228 i~~~W~~~v~~K~~hF~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ahl~~a~ 305 (384)
T cd09248 228 VPFSWTALVHVKAEHFCALAHYHAAMALCDSSPASEGELATQEKAFLQPHTSQPEGPSLPQEPEERRKLGK--AHLKRAI 305 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHhccCCCCCCCccccccChHHHHHHHH--HHHHHHH
Confidence 9999999999999999999999999986532 23555 8999999
Q ss_pred HHHHHHhcCCC---ch--hHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCCCccccc-cCCccchhhh
Q 002807 295 SALTEAKKSPK---GA--AAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKP-MAMNEVLDAS 368 (878)
Q Consensus 295 ~~l~~a~~~~k---~~--~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~-~~~~~~~~~~ 368 (878)
...++|.+..+ .+ ...+.+.+..-.+....++...++||||+|...-| .|.+..--|+ +..+++....
T Consensus 306 ~~~eea~r~~~~c~~l~~~~~l~~~l~~~~~~s~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~~~p~~~~~~ 379 (384)
T cd09248 306 LGQEEALRLHALCRILRKVDLLQAVLTQALRRSLAKYSELDREDDFFETGEAP------DIQPKTHQKPEIRAPSFSQVK 379 (384)
T ss_pred HhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhccccchhhccccC------ccccccccCcccCCCCccccc
Confidence 99999887643 11 24556677777788888899999999999866534 3555544444 3445555444
Q ss_pred Hhhhh
Q 002807 369 KEKMF 373 (878)
Q Consensus 369 ~~dlF 373 (878)
.+|+|
T Consensus 380 ~~d~f 384 (384)
T cd09248 380 VTDIF 384 (384)
T ss_pred ccCCC
Confidence 56666
No 10
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=100.00 E-value=1.1e-64 Score=566.81 Aligned_cols=338 Identities=30% Similarity=0.464 Sum_probs=305.1
Q ss_pred ccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCC---CchhHHHHHHHHHHHHHHHHhcC
Q 002807 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDP---TPSTRRDLLQNYFKALCLIETRF 93 (878)
Q Consensus 17 ~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~---~~~~~~~~l~~Yy~~L~~l~~rf 93 (878)
||++|+|+|.+|||..+|++||.++|++.+++.|+++|+++++||++++..... ..++ +++|.+||.+|..|+.||
T Consensus 1 ~i~~plk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~~lR~~~~~~~~~~~~~~~~-~~~l~~Y~~~L~~l~~~~ 79 (345)
T cd09034 1 FIGLPLKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLSKLRNNIVTEQNNDTTCENL-LEALKEYLPYLLGLEKKL 79 (345)
T ss_pred CCCCCCCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHHHHHHHHHhhccCCcchHHH-HHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999757899999999999999998775443 2455 999999999999999999
Q ss_pred CCCCCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCC-hHhHHHHHHHHHHHHHHHHHHH
Q 002807 94 PISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTT-VEGRRLASHSFIAAAGAFAYLR 172 (878)
Q Consensus 94 p~~~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~-~~~lK~A~~~fq~AAG~F~~l~ 172 (878)
|.+.. ... |.|+|+|+|+.++++.. ++.||++|||||+|++|+++|...++.+ ++|+|.||++||+|||+|+||+
T Consensus 80 ~~~~~--~~~-i~F~W~d~~~~~~~~~~-~l~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~ 155 (345)
T cd09034 80 PFQKL--RDN-VEFTWTDSFDTKKESAT-SLRYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLK 155 (345)
T ss_pred Ccccc--ccc-ceeEeecccCCCcchhh-hHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 97643 333 77999999986666666 9999999999999999999999999988 8999999999999999999999
Q ss_pred hhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHHHhhcCCCC--Cc
Q 002807 173 DNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKG-STPGVCAKISRQVGLYYEEALGALTVAPLK--DH 249 (878)
Q Consensus 173 ~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~-~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~--~~ 249 (878)
+++ .+.....+++||++++|.+|..+||||||||+|+||+.++ .+.++|||||++++++|++|.+.+.+.... ..
T Consensus 156 ~~~--~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~ 233 (345)
T cd09034 156 EHV--LPLPPDELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKN 233 (345)
T ss_pred Hhc--cccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Confidence 994 3333333678999999999999999999999999999999 999999999999999999999999876553 57
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 002807 250 FDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRA 329 (878)
Q Consensus 250 ~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a 329 (878)
++++|..+|.+|..+|+|+||||+|.++.+++++|++||||+.|...++++.+.++.....+.+.++.+.+.|++.++++
T Consensus 234 ~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 313 (345)
T cd09034 234 IPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESERLCKSFLLDVWGNLKKLKEKIEKELEKA 313 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987655433246788999999999999999
Q ss_pred HhcccccccccCCCCCCCCCCCCCccccccCC
Q 002807 330 VKENDRVYLMRVPSPSSLPPLPAFSMVKPMAM 361 (878)
Q Consensus 330 ~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~ 361 (878)
+||||+||||+||+.++||+|+++.|||++|+
T Consensus 314 ~kdNd~Iy~e~VP~~~~Lp~i~~~~~v~~~p~ 345 (345)
T cd09034 314 ERENDFIYFEEVPPEDPLPEIKGALLVKPPPL 345 (345)
T ss_pred HhhhhHhhcccCCCCCCCCccccccccCCCCC
Confidence 99999999999999999999999999998764
No 11
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=100.00 E-value=3.5e-62 Score=540.50 Aligned_cols=337 Identities=54% Similarity=0.881 Sum_probs=327.2
Q ss_pred ChHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHH--HHHHHHHhcCChhHHHHH
Q 002807 378 PDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLK--EEVEAVQISGGPAALEAE 455 (878)
Q Consensus 378 P~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~--~~~~~i~~~gg~~~l~~~ 455 (878)
|++||+|+|+|+|||++|||.++++++.++++++..|.+||||++|++++++.++|++|. ++++.|+..||++.|...
T Consensus 1 P~~v~~a~s~Y~erk~~lv~~e~~~l~~at~~~~~~L~~lnLP~sl~al~~~~~lp~sl~~~~~~~~v~~~gG~~~l~~~ 80 (339)
T cd09238 1 PESSAKALSKYTEMVDELIRTEADRLAAASDEARVALREMELPETLIALDGGASLPGDLGLDEEVEAVQISGGLAALEGE 80 (339)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCCCccchHHHHHHHHHcccHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002807 456 LQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDH 535 (878)
Q Consensus 456 l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~ 535 (878)
|++|.+++.+|..+|++|.++|+.|+.+|+.||.|||++|||+||+.+|++|+.++++|+++|++|.+||..|+++|++|
T Consensus 81 l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~~v~~k~~~~ 160 (339)
T cd09238 81 LPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSDESLRRRIEDA 160 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcChhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHH
Q 002807 536 SALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYED 615 (878)
Q Consensus 536 ~~~l~~L~~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~ 615 (878)
+.+|.+|+...+.+.+|++..++.++.+++..++..||.+|++|+.|+.+|..+++.||++.++|||+++||...+.++.
T Consensus 161 ~~~l~~L~~~~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~ 240 (339)
T cd09238 161 MDGMLILDDEPAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDA 240 (339)
T ss_pred HHHHHhcCcHhhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHH
Confidence 99999999888999999987666666666678899999999999999999999999999999999999999998877899
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002807 616 LFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVT 695 (878)
Q Consensus 616 lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~ 695 (878)
+|.+||+||++++.+|.+++.+|+.||.+|+..|+.|...++...+.++|+++++.|..||++|.||++||.+|++||++
T Consensus 241 lF~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~kFY~d 320 (339)
T cd09238 241 LFKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQIFDVEGWRAATESHATQIRAAVAKYRELREGMEEGLRFYSG 320 (339)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002807 696 LQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 696 L~~~l~~l~~~v~df~~~R 714 (878)
|.+.+.+|+++|+|||++|
T Consensus 321 L~~~~~~l~~~~~~fv~~R 339 (339)
T cd09238 321 FQEAVRRLKQECEDFVMTR 339 (339)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998
No 12
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=100.00 E-value=1.5e-60 Score=530.75 Aligned_cols=335 Identities=30% Similarity=0.524 Sum_probs=320.8
Q ss_pred ChHHHHHHHhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHH
Q 002807 378 PDSSAKALSRYTEMVDDVIRTQA-EKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAEL 456 (878)
Q Consensus 378 P~~V~ea~s~Y~e~k~~lvr~~~-~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l 456 (878)
|++||+|+|+|+|||++|||.++ ++++.+|++++.+|.+||||++|++++++.+||++|++||++|+..||++.|..+|
T Consensus 1 P~~v~ea~s~Y~erk~~lVr~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l 80 (353)
T cd09236 1 PFGVHLAISIYDDRKDRLVNESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASL 80 (353)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC-CCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002807 457 QQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT-RWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDH 535 (878)
Q Consensus 457 ~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~-~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~ 535 (878)
++|.+++..|..+|+++.++|+.|+.+|+.||.+||+ +|||+||+.++.+|+.++++|+++|++|.+||..|+++|+++
T Consensus 81 ~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~~ 160 (353)
T cd09236 81 DDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELVRRKLDEW 160 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCC--
Q 002807 536 SALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAG-- 611 (878)
Q Consensus 536 ~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~-- 611 (878)
...|.+|+ ..+|++.+|++..+. ..+.....|..||.+|++|+.|+.+|..++++||.++++|||+++||.+.+
T Consensus 161 ~~~l~lL~~~~~~l~~~~Ps~~~~~--~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~DDI~~~ll~~~~~~ 238 (353)
T cd09236 161 EDLIQILTGDERDLENFVPSSRRPS--IPPELERHVRALRVSLEELDRLESRRRRKVERARTKARADDIRPEILREAARL 238 (353)
T ss_pred HHHHHHHcCCHHHHHHhCCCCCCCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhh
Confidence 99999998 688999999976532 234567889999999999999999999999999999999999999997521
Q ss_pred ------------ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 002807 612 ------------SYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKY 679 (878)
Q Consensus 612 ------------~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y 679 (878)
.|++||.+||+||++++++|.+++.+|+.||.+|+..|+.|...++.+...++|+.++++|..||++|
T Consensus 239 ~~~~~~~~i~~~~fe~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~ay~~y 318 (353)
T cd09236 239 EREYPATEVAPAHFEDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKGDPATKERERALQSLDLAYFKY 318 (353)
T ss_pred hcccccccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHH
Confidence 26889999999999999999999999999999999999999988888888999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 680 REIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 680 ~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R 714 (878)
.||++||.+|++||++|.+++.+|+++|++||++|
T Consensus 319 ~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~~R 353 (353)
T cd09236 319 KEIVSNLDEGRKFYNDLAKILSQFRDACKAWVYER 353 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998
No 13
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=100.00 E-value=5.3e-60 Score=523.59 Aligned_cols=331 Identities=28% Similarity=0.480 Sum_probs=313.1
Q ss_pred ChHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHH
Q 002807 378 PDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQ 457 (878)
Q Consensus 378 P~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~ 457 (878)
|++||+|+|+|+|||++|||.++++++.+|++++.+|.+||||++|++++++ +||++|++||++|+..||++.|..+|+
T Consensus 1 P~~v~~a~s~Y~e~k~~lv~~~~~~l~~~~~~l~~~L~slnLP~sl~~l~~~-~lP~sl~~~~~~i~~~gg~~~l~~~l~ 79 (339)
T cd09235 1 PVSVHQALAAYNQRKAELVNREIGKLREATQLLNGVLASLNLPAAIEDVSGD-TVPQSLLEKSRTVIEKGGIQTIDQLIK 79 (339)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhcCC-CCCHHHHHHHHHHHhCCChHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999986 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 002807 458 QLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSA 537 (878)
Q Consensus 458 ~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~ 537 (878)
+|.++...|..+|++|.++|+.|+.+|+.||.+||++|||+||+.++.+||.++.+|+++|++|.++|..|+++|++|..
T Consensus 80 ~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~ 159 (339)
T cd09235 80 ELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQADKIVREKYESHRE 159 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhc---CC-
Q 002807 538 LMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTS---AG- 611 (878)
Q Consensus 538 ~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~---~~- 611 (878)
+|.+|+ .++|.+.+|+++. .. ...+...+..|+.+|++|+.|+.+|..++.+||.. +|||+++||.. .+
T Consensus 160 ~l~lLs~~~~~l~~~lPss~~-~~--~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~--~dDI~~~ll~~~~~~~~ 234 (339)
T cd09235 160 GIELLSKPEEELANAIPSASP-AK--TLQGSEAVQELRQLMEQVETIKAEREVIESELKSA--TFDMKSKFLSALAQDGA 234 (339)
T ss_pred HHHHHcCCHHHHHHhCCCCCC-CC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhcCC
Confidence 999998 6889999998742 11 12456789999999999999999999999999776 89999999964 23
Q ss_pred -ChHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002807 612 -SYEDLFRKEISK-YDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEG 689 (878)
Q Consensus 612 -~~e~lf~~eL~k-f~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG 689 (878)
.++.+|.+||+| |++++++|++++.+|+.||.+|+.+|.+|...+.......+|+.++++|..||++|.||++||.+|
T Consensus 235 ~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG 314 (339)
T cd09235 235 INEEAISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELTANLKEG 314 (339)
T ss_pred ccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 348899999975 999999999999999999999999999998888777778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 690 LKFYVTLQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 690 ~~FY~~L~~~l~~l~~~v~df~~~R 714 (878)
++||++|.+.+.+|+++|+|||++|
T Consensus 315 ~kFY~dL~~~~~~~~~~~~~fv~~R 339 (339)
T cd09235 315 TKFYNDLTEILVKFQNKCSDFVFAR 339 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998
No 14
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=100.00 E-value=1.2e-60 Score=520.45 Aligned_cols=338 Identities=30% Similarity=0.481 Sum_probs=274.3
Q ss_pred ccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCCC
Q 002807 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPIS 96 (878)
Q Consensus 17 ~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~ 96 (878)
||+||+|+|.+|||.++|++||.++|++ +++.|++||.+|++||+++.+ ++.+++| ++.|.+||.||+.|+.|||.+
T Consensus 1 ~i~lplK~T~~VD~~~pL~~yI~~~Y~q-~~~~y~~dl~~l~~LR~~~~~-~~~~~sg-~e~L~~YY~qL~~Le~RFp~~ 77 (385)
T cd09249 1 LIPLGLKETKDVDFSVPLKDFILEHYSE-DGSEYEDEIADLMDLRQACRT-PSRDEAG-VELLMSYFSQLGFLENRFFPP 77 (385)
T ss_pred CCCCCCCcCCccChHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhcC-CCCChhH-HHHHHHHHHHHHHHHhhCCCC
Confidence 7999999999999999999999999998 789999999999999999654 4556788 999999999999999999987
Q ss_pred CCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhh
Q 002807 97 PDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA 176 (878)
Q Consensus 97 ~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~ 176 (878)
..+ +. |.|+|+|+|+ +.+++++++.||++||||||||+||++|+.++|.+++|+|.||.+||+|||||+||++++.
T Consensus 78 ~~~--~~-v~FtW~Dsf~-~~~~~q~sl~fEkasVLFNigAl~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~ 153 (385)
T cd09249 78 TRQ--MG-ILFTWYDSFT-GVPVSQQNLLLEKASILFNIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYLKETFT 153 (385)
T ss_pred ccc--cc-ceeeeeccCC-CCccccccHHHHHHHHHHhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 553 44 7799999997 7899999999999999999999999999999999999999999999999999999999942
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH-----HHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 002807 177 TKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGV-----CAKISRQVGLYYEEALGALTVAPLKDHFD 251 (878)
Q Consensus 177 ~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~l-----iAKLA~qv~~~Y~~a~~~l~~~~~~~~~~ 251 (878)
+.++.||++++|.+|..|||||||||||+|++.+++++++ |||||++|+++|++|.+.++....++.++
T Consensus 154 ------~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~k~~~~~i~kiAklAaqvs~~Y~~a~~al~s~~~~~~i~ 227 (385)
T cd09249 154 ------HTPSYDMSPAMLSVLVKMMLAQAQECLFEKISLPGIRNEFFTLVKMAQEAAKVGEVYMQVHTAMNQAPVKENIP 227 (385)
T ss_pred ------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 5788999999999999999999999999999999999987 89999999999999999999888888999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHhhhhh-----------hc-hH----------------------H--HHHHHHHHHH
Q 002807 252 KAWVTHVQLKAALFYAEACYRYSLELHEK-----------EE-IA----------------------E--EIARLKSGIS 295 (878)
Q Consensus 252 ~~w~~~~~~K~~~f~A~A~y~~a~~~~e~-----------~~-~G----------------------e--aIa~L~~A~~ 295 (878)
++|+.||++|.+||.|+||||+|.++.+. ++ .| . +-|+|+.|..
T Consensus 228 ~~W~~~v~~K~~~f~AlA~Y~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~hl~~a~~ 307 (385)
T cd09249 228 YSWSSLVQVKAHHYNALAHYFVATLLIDHQLNPSDDEDKQEKALSQLYDHMPEGLTPLTILKNKQQRRLLGKAHLRRAIM 307 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHHhccccCChhhhhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987742 11 11 1 1256677766
Q ss_pred HHHHHhcCCCc---hh--HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCCCccccc-cCCccchhhhH
Q 002807 296 ALTEAKKSPKG---AA--AQLLDAISKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKP-MAMNEVLDASK 369 (878)
Q Consensus 296 ~l~~a~~~~k~---~~--~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~-~~~~~~~~~~~ 369 (878)
.-++|.+..+- +. ..+...+..-.+.-..++...++|.||-....- |.|.+..--|+ +..|++.....
T Consensus 308 ~~eea~r~~~~c~~l~~~~~l~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~~~v 381 (385)
T cd09249 308 HHEEAIREASLCKKLRNIDVLQEVLSAAHNRSLLKYAQHQKEDDFLDLIDA------PDIVSKTEKKVEMIIPQFSKVKV 381 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcccc------CCcccccccCccccCCCcccccc
Confidence 66666655221 11 122223333333334445556778887654422 33444433343 33445554445
Q ss_pred hhhh
Q 002807 370 EKMF 373 (878)
Q Consensus 370 ~dlF 373 (878)
+|+|
T Consensus 382 ~d~f 385 (385)
T cd09249 382 TDLF 385 (385)
T ss_pred CCCC
Confidence 6666
No 15
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=100.00 E-value=2.8e-57 Score=505.11 Aligned_cols=333 Identities=32% Similarity=0.530 Sum_probs=318.8
Q ss_pred ChHHHHHHHhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHH
Q 002807 378 PDSSAKALSRYTEMVDDVIRTQA-EKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAEL 456 (878)
Q Consensus 378 P~~V~ea~s~Y~e~k~~lvr~~~-~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l 456 (878)
|++||+|+|+|+|||+++||.++ ++++.+|++++++|.+||||++|++++++.+||++ ++|+++|+..||++.|...+
T Consensus 1 P~~V~ea~s~Y~E~k~~lvr~e~~~~~e~~~~~l~~~L~slnLP~sl~~l~~~~~lP~~-~~~~~~i~~~gg~~~l~~~~ 79 (342)
T cd08915 1 PYDVIESASAYNERQDDYVREHIVEPIEALNKLLNSFLAERNLPASIDDLQKPENLPDS-IQHSQEIIEEGGLDNIEQSF 79 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHhcCCCCCCch-HHHHHHHHccCcHHHHHHHH
Confidence 89999999999999999999999 99999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC-CCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002807 457 QQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT-RWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDH 535 (878)
Q Consensus 457 ~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~-~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~ 535 (878)
+.|.++...+.++|+++.++|+.|+.+|+.+|.+||+ +|+|++|+.++.+|+.++.+|+++|++|++||..|+++|+.+
T Consensus 80 ~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~ 159 (342)
T cd08915 80 KELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESI 159 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCC--
Q 002807 536 SALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAG-- 611 (878)
Q Consensus 536 ~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~-- 611 (878)
.+.|.+|+ .++|.+.+|+.. .+.++.....+..|+.+|++|+.|+.+|..++++||.++++|||+++||.+.+
T Consensus 160 ~~~l~lL~~~~~~l~~~~Ps~~---~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~ 236 (342)
T cd08915 160 DPNLVLLCGGYKELKAFIPSPY---PALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKN 236 (342)
T ss_pred HHHHHHhcCChHHHHHhCCCcc---ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhcc
Confidence 99999998 788999999322 12334556889999999999999999999999999999999999999998753
Q ss_pred ---ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002807 612 ---SYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINE 688 (878)
Q Consensus 612 ---~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~e 688 (878)
.++.||.+||+||++++.+|++++.+|+.||.+|+..|++|...++.+....+|+.++++|..||+.|.+|++||.+
T Consensus 237 ~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r~~~l~~L~~ay~~y~el~~~l~e 316 (342)
T cd08915 237 GTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNSNDSLDPREEALQDLEASYKKYLELKENLNE 316 (342)
T ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 47899999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 689 GLKFYVTLQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 689 G~~FY~~L~~~l~~l~~~v~df~~~R 714 (878)
|++||++|.+++++|+++|++||++|
T Consensus 317 G~~FY~dL~~~~~~l~~~~~~f~~~R 342 (342)
T cd08915 317 GSKFYNDLIEKVNRLLEECEDFVNAR 342 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998
No 16
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=100.00 E-value=2.2e-56 Score=494.79 Aligned_cols=331 Identities=23% Similarity=0.394 Sum_probs=315.7
Q ss_pred ChHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcC-CCCChhHHHHHHHHHhc-CChhHHHHH
Q 002807 378 PDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGN-MTLPADLKEEVEAVQIS-GGPAALEAE 455 (878)
Q Consensus 378 P~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~-~~lP~~l~~~~~~i~~~-gg~~~l~~~ 455 (878)
|++||+|+|+|+|||++|||.++++++.+|++++.+|.+||||+++.++.++ .+||++|++||++|+.. ||++.|...
T Consensus 1 P~~v~~a~S~Y~E~ka~lvr~~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~ 80 (337)
T cd09234 1 PMEAHEASSLYSEEKAKLLREVVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEA 80 (337)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHH
Confidence 8999999999999999999999999999999999999999999999999887 78999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002807 456 LQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDH 535 (878)
Q Consensus 456 l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~ 535 (878)
|++|.++...+.++|+++.++|+.|+.+|+.||.+||+ |++|..++++|+.++.+|+++|.+|++||..|+++|++|
T Consensus 81 ~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~---~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~ 157 (337)
T cd09234 81 MGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGK---RGSSIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLH 157 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCC---CCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 588888999999999999999999999999999999999
Q ss_pred HHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCC-C
Q 002807 536 SALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAG-S 612 (878)
Q Consensus 536 ~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~-~ 612 (878)
..+|.+|+ .++|.+.+|+++.+. .+.+..++..||.+|++|+.|+.+|..++++||+++++|||+++||.+.+ .
T Consensus 158 ~~~l~lL~~~~~~l~~~iPs~~~~~---~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~~~~ 234 (337)
T cd09234 158 IANLKLLAGPLDELQKKLPSPSLLD---RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTTGGD 234 (337)
T ss_pred HHHHHHHcCcHHHHHhhCCCccccC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhcchh
Confidence 99999998 788999999976432 22456789999999999999999999999999999999999999999875 5
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002807 613 YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNL-EDYRASREKCYKQIQAAIAKYREIKENINEGLK 691 (878)
Q Consensus 613 ~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~-~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~ 691 (878)
+++||.+||+||++++++|.+++.+|+.||.+|+.+|++|...++. +...++|+.++++|..||++|.||++||.+|++
T Consensus 235 ~e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~ 314 (337)
T cd09234 235 MEDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGID 314 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999999999999999999999988876 778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002807 692 FYVTLQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 692 FY~~L~~~l~~l~~~v~df~~~R 714 (878)
||++|.+.+.+|+++|++||++|
T Consensus 315 FY~dL~~~v~~~~~~~~~f~~~~ 337 (337)
T cd09234 315 FYKKLEGNVSKLLQRIKSVCKVQ 337 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875
No 17
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=100.00 E-value=6.9e-56 Score=495.22 Aligned_cols=333 Identities=19% Similarity=0.289 Sum_probs=312.0
Q ss_pred ChHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHH
Q 002807 378 PDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQ 457 (878)
Q Consensus 378 P~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~ 457 (878)
|++||+++|+|+|+|++|||.++++++.+|++++++|.+||||++|++++++. |+++. +++|+..||...+...++
T Consensus 1 P~~V~ea~S~YsE~ka~lvr~e~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~--~~~~~--~~~i~~~~g~~~~~~~~~ 76 (356)
T cd09237 1 PLAVHEKESLYSEEKAKLLRAEVERVEVANEEYASFLEYLNLPKLLVDLKERF--EGENE--LMEIVSGLKSSSVDSQLE 76 (356)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHhhhc--CCchh--HHHHHHhccCCCcchhHH
Confidence 89999999999999999999999999999999999999999999999999765 77777 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 002807 458 QLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSA 537 (878)
Q Consensus 458 ~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~ 537 (878)
.|.++...+.++|+++.++|+.|+.+|+.+|.+||++|||+||+.++.+||.++.+|+++|.+|++||..|+++|+++..
T Consensus 77 ~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~Wtr~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~ 156 (356)
T cd09237 77 LLRPQSASWVNEIDSSYNDLDEEMKEIEKMRKKILAKWTQSPSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKE 156 (356)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC--hhhhHhhC--CCCCcCcCCCCc----c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhH
Q 002807 538 LMSILD--RRPIESAL--PTLARPIMSLDA----T----EDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPK 605 (878)
Q Consensus 538 ~l~~L~--~~~l~~~l--P~~~~p~~~l~~----~----~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~k 605 (878)
.|.+|+ ..++++++ |++..+..++.+ . ....+..|+.+|++|+.|+.+|..++++||+++++|||+++
T Consensus 157 ~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~DDI~~~ 236 (356)
T cd09237 157 DIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHNDDISDI 236 (356)
T ss_pred HHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 999998 67788888 875444323221 2 46679999999999999999999999999999999999999
Q ss_pred HhhcCC----ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------chhHHHHHHHHHHHHHH
Q 002807 606 LMTSAG----SYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFN-------LEDYRASREKCYKQIQA 674 (878)
Q Consensus 606 Li~~~~----~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~-------~~~~~~~re~~l~~L~~ 674 (878)
||.+.+ .++.||.+||+||++++++|.+++.+|+.||.+|+..|+.|...++ .+...++|+.++++|..
T Consensus 237 ll~~~~~~~~~~e~lF~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ 316 (356)
T cd09237 237 LILNSKSKSEIEKQLFPEELEKFKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKK 316 (356)
T ss_pred HHHhcccccchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999875 3588999999999999999999999999999999999999976554 56678999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 675 AIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 675 A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R 714 (878)
||+.|.+|++||.+|++||++|.+.+.+|+++|++||++|
T Consensus 317 ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~fv~~R 356 (356)
T cd09237 317 AYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQAFVNQR 356 (356)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999987
No 18
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=100.00 E-value=2.5e-55 Score=482.55 Aligned_cols=330 Identities=19% Similarity=0.247 Sum_probs=269.8
Q ss_pred cccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHccc---CCCCCchhHHHHHHHHHHHHHHHHhcCC
Q 002807 18 LAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVER---VPDPTPSTRRDLLQNYFKALCLIETRFP 94 (878)
Q Consensus 18 l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~---~~~~~~~~~~~~l~~Yy~~L~~l~~rfp 94 (878)
-.-|||.|.+|+|. ++. .... .....-|..+..-|..+.. .+..+...+..+|.+|+..|.+|.....
T Consensus 3 ~r~~~k~t~~~~f~--~~~----~~~~---~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~a~~~Yl~ll~g~~~~~d 73 (353)
T cd09243 3 HRNPLKATAPVKFD--LKG----VATT---PAASKLCSDLRTARARLLELLSDPSNDVDTVKTAFNAYLSLLQGFILALD 73 (353)
T ss_pred CCCccccccccccc--ccc----ccCC---hhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhccc
Confidence 45699999999994 321 2222 3456667888888987653 3333456678999999999999987432
Q ss_pred CCC-CCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhh----CCCCChHhHHHHHHHHHHHHHHHH
Q 002807 95 ISP-DKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLS----CDRTTVEGRRLASHSFIAAAGAFA 169 (878)
Q Consensus 95 ~~~-~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~----~~r~~~~~lK~A~~~fq~AAG~F~ 169 (878)
... +......|.|+|+|+|+++.++++.++.||++|||||||++|+++|+. .+++ .+|+|.||++||+|||||+
T Consensus 74 ~~~~~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal~s~~As~~~~~~~~s-~e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 74 GKTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALWYTKHASKLAGKEDIT-EDEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred ccCCccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHHHHHHH
Confidence 211 112234588999999977889999999999999999999999876654 3443 4999999999999999999
Q ss_pred HHHhhhhccccCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002807 170 YLRDNAATKASVGS--STTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLK 247 (878)
Q Consensus 170 ~l~~~~~~~~~~~~--~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~ 247 (878)
||+++++ +.+.. .++.||++++|.+|..+||||||||+|+||+.++++++||||||++++++|++|.+.|.+ ..
T Consensus 153 ~l~e~~l--~~l~~~~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~k~k~sliaKLA~q~a~~Y~~A~~~l~~--~~ 228 (353)
T cd09243 153 FVKENYI--PKLIEPAEKGSDLDPRVLEAYINQCTAEAQEVTVARAIELKHNAGLISALAYETAKLFQKADDSLSS--LD 228 (353)
T ss_pred HHHHhhc--ccccccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 9999953 32222 377899999999999999999999999999999999999999999999999999999875 24
Q ss_pred CcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCC------chhH----HHHHHHHH
Q 002807 248 DHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPK------GAAA----QLLDAISK 317 (878)
Q Consensus 248 ~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k------~~~~----~~~~~~~~ 317 (878)
+.++.+|+.||++|..+|+|+||||+|..+.++++||++||+|+.|.++++++++.++ +... ...++++.
T Consensus 229 ~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~~~~~~~~~~~~~~~~~ 308 (353)
T cd09243 229 PEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKAEALCKEYAKTKGPGTTAKPDQHLFFRK 308 (353)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhhHHHHH
Confidence 4688999999999999999999999999999999999999999999999999876543 1111 22356888
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCCCCCCCCC-ccccccCC
Q 002807 318 LEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAF-SMVKPMAM 361 (878)
Q Consensus 318 l~~~i~~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~-~~vk~~~~ 361 (878)
+.+.|++.|++++||||||||++||+...++++++. .+|+|++|
T Consensus 309 l~~~I~~~L~~aeKDNdfIYh~~VP~e~p~~e~k~~~g~~~~~~~ 353 (353)
T cd09243 309 LGPLVKRTLEKCERENGFIYHQKVPDEVPQLELKATYGLVSPEEF 353 (353)
T ss_pred HHHHHHHHHHHHhhhhceeccccCCCCCCccccccccCccCCCCC
Confidence 999999999999999999999999986555565553 69998765
No 19
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=100.00 E-value=2.8e-51 Score=455.21 Aligned_cols=324 Identities=19% Similarity=0.217 Sum_probs=256.3
Q ss_pred cCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCC------ch----hHHHHHHHHHHHHHHH
Q 002807 20 IYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPT------PS----TRRDLLQNYFKALCLI 89 (878)
Q Consensus 20 iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~------~~----~~~~~l~~Yy~~L~~l 89 (878)
+.+-+|+.+.|.+ +|...- ......|.+.+.-|+.+....+.+ .. ..+..|..|+..|..+
T Consensus 3 ~~~p~t~~~~f~~----~~~~~~-----~~t~~~l~~~s~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~L~~~~~~L~~~ 73 (346)
T cd09247 3 FAKPKTKKIVFEK----TFQARD-----SLTLEQLKELSLRRRAIIESINGSPFIALAIAREKAQYLPYLEGYLPALENL 73 (346)
T ss_pred ccccCccccchhh----hhhcCC-----cccccccchhhHHHHHHHHHhhcCCCccHHHHHhhhhHHHHHHHHHHhhccC
Confidence 5567888898865 444431 112333444444444333211111 01 1244555555555555
Q ss_pred HhcCCCCCCCCCccccceeeecCCCC--C-CcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHH
Q 002807 90 ETRFPISPDKDHINTVMFLWFDAFKQ--K-QKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAG 166 (878)
Q Consensus 90 ~~rfp~~~~~~~i~~l~F~W~ds~~~--~-~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG 166 (878)
..++-. .... ..+.|+|+|+|+. + +.+++.++.||++|||||+|++|+++|....+. +|+|.||++||+|||
T Consensus 74 ~~~~~~--~~l~-~~i~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~~s~~A~~~~~~--e~~K~A~~~l~~AAG 148 (346)
T cd09247 74 VNHRDK--VQLN-EQLSFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAALRERASEVLPT--EDFKEAATHLRRAAG 148 (346)
T ss_pred CccchH--Hhhc-ccCceeeecccCCCCCCceeeccchHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHH
Confidence 554310 0011 2377999999975 2 457888999999999999999999999987664 899999999999999
Q ss_pred HHHHHHhhhhccccCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHh
Q 002807 167 AFAYLRDNAATKASVG-----SSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGAL 241 (878)
Q Consensus 167 ~F~~l~~~~~~~~~~~-----~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l 241 (878)
||+||+++++ +.+. ...++||+++++.+|..|||||||||+|+||+.++++++||||||++++++|++|.+.+
T Consensus 149 ~f~~l~~~~l--~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~~~~~~sliAKLa~~~~~~y~~A~~~l 226 (346)
T cd09247 149 VFEFLAHDEL--PRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEEKGTSPSLLAKLHYGATQFLEEAKNVL 226 (346)
T ss_pred HHHHHHhccc--cccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999853 2221 23478999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-CCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 002807 242 TVAPL-KDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEA 320 (878)
Q Consensus 242 ~~~~~-~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~ 320 (878)
.+... ...++++|+.|+.+|..+|+|+||||+|.++.++++||++||||+.|...++++.+..+. .+.++++.+.+
T Consensus 227 ~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~~~~---~~~~~~~~~~~ 303 (346)
T cd09247 227 RSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPGSDI---SSPVIFRDERA 303 (346)
T ss_pred HccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccCch---hHHHHHHHHHH
Confidence 86432 134789999999999999999999999999999999999999999999999998876432 23568889999
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCCCCCCCccccccCCc
Q 002807 321 NLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMN 362 (878)
Q Consensus 321 ~i~~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~ 362 (878)
.|+..+++++|||||||||+||+.++||+|+++.|||++|+.
T Consensus 304 ~i~~~l~~a~kdNd~IY~e~VP~~~~L~~~~~~~~vk~ip~~ 345 (346)
T cd09247 304 EVATLLQKYEKENEVIYFEKVPDIDELPLPEGKVIVKPVPYK 345 (346)
T ss_pred HHHHHHHHHHhccCeEEeecCCCccccCCCccccceeecCCC
Confidence 999999999999999999999999999999999999999874
No 20
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=100.00 E-value=8.1e-51 Score=456.91 Aligned_cols=286 Identities=19% Similarity=0.174 Sum_probs=240.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccccceeeecCCCCCC-----cccccchhHHHHHHHHHHHHHHHHHHhhC-
Q 002807 73 STRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQ-----KASQQNIHLEKAAVLFNLGAVYSQIGLSC- 146 (878)
Q Consensus 73 ~~~~~~l~~Yy~~L~~l~~rfp~~~~~~~i~~l~F~W~ds~~~~~-----~~~~~sl~fEka~VLfNiaal~s~~A~~~- 146 (878)
..++++|.+||.+|..|+.+||.+....... |.|+|+|+|+.+. .+++.++.||++|||||+|++|+++|.+.
T Consensus 57 ~~~~~aL~~Ylp~L~~l~~~~~~~~~~l~~~-i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l~S~~A~~~l 135 (413)
T cd09245 57 LTVVKALEEYLPYLLAIDACLSHDELILKSE-PTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYALSNLARSIL 135 (413)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchhccccc-ceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4459999999999999999999874333333 8899999997443 58999999999999999999999999982
Q ss_pred --------C--------CCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCC-----CCCCCCCCHHHHHHHHHHHHHHH
Q 002807 147 --------D--------RTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVG-----SSTTVDISVECAGMLERLMLAQA 205 (878)
Q Consensus 147 --------~--------r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~-----~~~~~Dls~~~L~~L~~lmLAQA 205 (878)
+ +.+++|+|.||++|++|||||+||+++++ +.+. ..+++||+++++.+|..||||||
T Consensus 136 ~~~~~~~~~~~is~~~~~~~~e~lK~A~~~l~~AAGvf~~L~~~~l--~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqA 213 (413)
T cd09245 136 APLGAYETDRSISDASRKQRDERLKAATKLLCKAAGIFDYLATRVL--PQWESNRGGAPPPPDLSPEVLSALSSLALAEA 213 (413)
T ss_pred cccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhccc--ccccccccCCCCCcccCHHHHHHHHHHHHHHH
Confidence 2 56789999999999999999999999953 3222 25678999999999999999999
Q ss_pred HHHHHHHHHh-------cCC-----------CccHHHHHHHHHHHHHHHHHHHhhcCCC---CCcchHhHHHHHHHHHHH
Q 002807 206 QECVFENTIA-------KGS-----------TPGVCAKISRQVGLYYEEALGALTVAPL---KDHFDKAWVTHVQLKAAL 264 (878)
Q Consensus 206 QEc~~~Ka~~-------~~~-----------k~~liAKLA~qv~~~Y~~a~~~l~~~~~---~~~~~~~w~~~~~~K~~~ 264 (878)
|||+|+|++. +++ +++||||||.+++++|++|...|..... ...++++|+.|+.+|..+
T Consensus 214 Qel~~~K~~~~~~~~d~~~~~~ap~~~k~~~s~sLiAKLa~~~~~~y~~A~~~l~~~~~~~~~~~i~~~~~~yl~~k~~~ 293 (413)
T cd09245 214 TLLAVRKLDPYPAAVDKDWMTPGPPLPKVHPSAHLLARLCLAASEHAESARALLSTPGSKRGSGEVSEELLRYLSDLRRV 293 (413)
T ss_pred HHHHHHhhhhhcccccchhcccCcccccccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHH
Confidence 9999999986 222 5699999999999999999999986543 346899999999999999
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCC---------ch------h-HHHHHHHHHHHHHHHHHHHH
Q 002807 265 FYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPK---------GA------A-AQLLDAISKLEANLNRNLDR 328 (878)
Q Consensus 265 f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k---------~~------~-~~~~~~~~~l~~~i~~~l~~ 328 (878)
|+|+||||+|+++.+++++|++||||+.|...++++++... +. . ......+..+..+|+..+++
T Consensus 294 ~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~e~~~i~~~l~~ 373 (413)
T cd09245 294 ARALACKFLGIDAGENGKVGEAIGWLRAAKKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKK 373 (413)
T ss_pred HHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhhhhhhchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888765321 00 0 00013577889999999999
Q ss_pred HHhcccccccccCCCCCCC--CCCCCCccccccCC
Q 002807 329 AVKENDRVYLMRVPSPSSL--PPLPAFSMVKPMAM 361 (878)
Q Consensus 329 a~kdNd~IY~e~VP~~~~L--p~i~~~~~vk~~~~ 361 (878)
++||||+||||+||+.++| +-..+..++++.++
T Consensus 374 ~~K~ND~Iy~q~VP~~~~L~~~~P~Gr~i~~~~~~ 408 (413)
T cd09245 374 YKKMNDTVSFQPVPPSSELQSSMPSGREAHTAKPY 408 (413)
T ss_pred HHHhcceeeeecCCChHhhhhcCCCcccccCCCCC
Confidence 9999999999999998887 33357788877654
No 21
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=100.00 E-value=1.8e-46 Score=411.29 Aligned_cols=290 Identities=34% Similarity=0.561 Sum_probs=255.9
Q ss_pred hhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHH
Q 002807 426 LEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTK 505 (878)
Q Consensus 426 l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~ 505 (878)
|+++.+||++|++++++|+..||+..|.++++.|.+++..++++|++|+++|++|+.+|+.+|.+||++|+|+||+.+++
T Consensus 1 l~~~~~lP~~l~~~~~~v~~~~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~ 80 (296)
T PF13949_consen 1 LEGPEGLPPSLLEKSEEVRSEGGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNA 80 (296)
T ss_dssp -STT-S--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCH
T ss_pred CCCCCCCChHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHH
Q 002807 506 NLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLG 583 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~ 583 (878)
+|+.+|.+|+++|++|.++|..|+++|+.+...|.+|+ .++|.+.||+++. .. .+.....+..|+.+|++|+.|+
T Consensus 81 ~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~-~~--~~~~~~~i~~L~~ll~~l~~l~ 157 (296)
T PF13949_consen 81 SLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSP-SD--SPQVSEVIRQLRELLNKLEELK 157 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B----S--SGSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCc-cc--ccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 6899999999862 21 1334789999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCchhHHhh-c---CCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 002807 584 AQRAGLEDMLKEMKRKDDILPKLMT-S---AGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLE 659 (878)
Q Consensus 584 ~qR~~l~~~lk~~~~~ddI~~kLi~-~---~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~ 659 (878)
.+|+.++++|+.+++.|||...|+. + ..+++.||.++|+||++++.+|++++..|+.||.+|+..|++|...++.+
T Consensus 158 ~eR~~~~~~lk~~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~ 237 (296)
T PF13949_consen 158 KEREELLEQLKEKLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSD 237 (296)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998866666665552 1 23578999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 660 DYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQC 718 (878)
Q Consensus 660 ~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~ 718 (878)
....+|+.+++.|..||+.|.+|++||.+|++||++|.+.+++|+++|++||++|+.|+
T Consensus 238 ~~~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~~~R~~E~ 296 (296)
T PF13949_consen 238 QEQKERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFCNARREEK 296 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 88899999999999999999999999999999999999999999999999999999985
No 22
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=98.97 E-value=5.1e-07 Score=108.82 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=140.5
Q ss_pred ccccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhc-C
Q 002807 15 NIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETR-F 93 (878)
Q Consensus 15 ~~~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~r-f 93 (878)
..|+++.|+++..+++..+|...|..++...+.+.|+..|..|+..|....... +..-+ ...+.. +..++....+ |
T Consensus 101 ~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq~aagaf~~l~-~~~~~-~~~~~d-~~~~~l~~~~~l 177 (714)
T KOG2220|consen 101 VTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQAAAGAFRYLS-RDALG-VEPLVD-LSSLTLVFLRFL 177 (714)
T ss_pred eeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhc-HHhcC-cccccc-cCHHHHHHHHHh
Confidence 368899999999999999999999999994478999999999999997664332 11112 233333 3333332222 3
Q ss_pred CCCCCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHh
Q 002807 94 PISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRD 173 (878)
Q Consensus 94 p~~~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~ 173 (878)
+....+ . +-| ++++. +....+--..+++.+|+||.+|++++++...+|.+.++++.+...|+.++|++.|+..
T Consensus 178 ~~AqAQ-e---c~f--~ks~~-d~~~~~~iaKis~q~~~fy~~Al~~~~~~~~~~~~~~w~~~~~~k~~~~~~v~~~~~~ 250 (714)
T KOG2220|consen 178 MLAQAQ-E---CFF--YKSLT-DNPKPSIIAKLSAQVVLFYEEALKAQIGARADRITKEWLTLVAAKFARFAGVAYYYQS 250 (714)
T ss_pred hHHhhc-h---hee--ehhhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333211 1 224 77774 5556666778999999999999999999878899999999999999999999999998
Q ss_pred hhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002807 174 NAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFE 211 (878)
Q Consensus 174 ~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~ 211 (878)
.+. +.+..|...-.+-.+...||++||+|...
T Consensus 251 ~~~------~e~~~~ge~i~~l~~~~~~l~~Aqk~~~~ 282 (714)
T KOG2220|consen 251 LFL------HEKSKDGEAIARLQLSLLMLSEAQKCSFG 282 (714)
T ss_pred HHh------hhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 853 67788999999999999999999999986
No 23
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1e-06 Score=101.65 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 002807 409 LTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDL 462 (878)
Q Consensus 409 ~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l 462 (878)
++.+-|..++|+..|+.+. +.|-..=++|++.+ |++++-..+..|.+|
T Consensus 148 ~l~~gl~t~~l~~CleslR--VsL~~npVSwvn~F----gvegl~ll~~~Lkrl 195 (1102)
T KOG1924|consen 148 ELRSGLSTKKLLECLESLR--VSLTSNPVSWVNKF----GVEGLGLLLDVLKRL 195 (1102)
T ss_pred HHHcccccccHHHHHHHHh--hhhcCCccHHHHHh----hhhhHHHHHHHHHHH
Confidence 4455577788888877775 44545556677776 344444444444444
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.20 E-value=0.00024 Score=82.79 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 002807 573 KQSLRQLETLGAQ 585 (878)
Q Consensus 573 r~ll~~l~~l~~q 585 (878)
..+..+|++++.+
T Consensus 368 ~el~~rledir~e 380 (1102)
T KOG1924|consen 368 EELSGRLEDIRAE 380 (1102)
T ss_pred HHHHhHHHhhhhh
Confidence 3344445554433
No 25
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.87 E-value=2.1 Score=53.18 Aligned_cols=73 Identities=8% Similarity=0.098 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHH
Q 002807 220 PGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGIS 295 (878)
Q Consensus 220 ~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~ 295 (878)
+.|+++|+..+..+-..|.++=... ..+.+..++. .++-|...-+++-. -.+....+-.+++.++.-|+.-..
T Consensus 1170 D~il~~L~~rt~rl~~~A~~l~~tG-v~gay~s~f~-~me~kl~~ir~il~-~~svs~~~i~~l~~~~~~lr~~l~ 1242 (1758)
T KOG0994|consen 1170 DAILQELALRTHRLINRAKELKQTG-VLGAYASRFL-DMEEKLEEIRAILS-APSVSAEDIAQLASATESLRRQLQ 1242 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-CchhhHhHHH-HHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHH
Confidence 4588999999988877776544333 3333433332 23333333332210 112234444566666666654433
No 26
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.68 E-value=2.9 Score=52.10 Aligned_cols=125 Identities=10% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcC---ChhHHHHHHHHHHHHH---HHHHHHHHHHH
Q 002807 401 EKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISG---GPAALEAELQQLRDLR---RVNQELLVQTE 474 (878)
Q Consensus 401 ~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~g---g~~~l~~~l~~l~~l~---~~~~~~L~e~~ 474 (878)
.+.++.+.+++..+.+++ +.+.+...=|++|.+-+++|-... ..+.|..+..+|++.- .++..||.++.
T Consensus 1464 ~q~~~s~~el~~Li~~v~-----~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~ 1538 (1758)
T KOG0994|consen 1464 SQMEESNRELRNLIQQVR-----DFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTK 1538 (1758)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 444444445444444332 233344456677776666654321 2334444444443322 23455555554
Q ss_pred HHHHH-HHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 002807 475 ELLQK-EATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSI 541 (878)
Q Consensus 475 ~~L~~-E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~ 541 (878)
..++. |.-+.++-|++ +| ...++...+.+++.|++|..+-......|+....++..
T Consensus 1539 ~di~ra~~L~s~A~~a~---~~--------A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~ 1595 (1758)
T KOG0994|consen 1539 GDIARAENLQSEAERAR---SR--------AEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRL 1595 (1758)
T ss_pred hhHHHHHHHHHHHHHHH---hH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 43332 22222222322 12 34678888899999999999998888888887777653
No 27
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=96.67 E-value=1.9 Score=49.91 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002807 696 LQDAITNIKQQCSDFVMTRNIQCREMIEDV 725 (878)
Q Consensus 696 L~~~l~~l~~~v~df~~~R~~E~~~L~~~l 725 (878)
|...+..+..+-+.|+..-..+..+++..+
T Consensus 259 ~~~~~~~~~~qh~~~~q~~q~q~~~~e~~~ 288 (757)
T KOG4368|consen 259 FQQQIQTLKTQHEEFVQQQQQQMPQMEAEV 288 (757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 334445556666667666555555555444
No 28
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=2.4 Score=52.91 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhC
Q 002807 466 NQELLVQTEELLQKEATEDAQFRSQFG 492 (878)
Q Consensus 466 ~~~~L~e~~~~L~~E~~eD~~~R~kyG 492 (878)
..+.+.-++..|..+.--|.-+-+..|
T Consensus 500 tgd~~~aV~~cl~~~~~a~AliiA~~g 526 (1049)
T KOG0307|consen 500 TGDFKSAVELCLEANKMADALIIAHAG 526 (1049)
T ss_pred hccHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 444455555555555555555555555
No 29
>PHA03247 large tegument protein UL36; Provisional
Probab=96.20 E-value=0.094 Score=69.37 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002807 565 EDAIVGALKQSLRQLETLGAQRAGLEDMLKEM---KRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQL 641 (878)
Q Consensus 565 ~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~---~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~L 641 (878)
.+++|.+..-||+++++-.+-=-+-++-|++. +.....+.+++.+.| --..|.+.|.+...++.++++-...=+.-
T Consensus 1645 ~~dIVtQaALLL~~vEea~ELDvqAVeWL~qAr~IiDsHpLT~~~~d~~G-Pm~~yaeRidaL~~lR~~ld~Lrr~le~A 1723 (3151)
T PHA03247 1645 VAEIVDQIELLLEQTEKAAELDVAAVDWLEHARRVFEAHPLTAARGGGPD-PLARLHARLDALGETRRRTEALRRSLEAA 1723 (3151)
T ss_pred HHHHHHHHHHHHHHhhhccccCHHHHHHHHHHHHHhccCCcceeccCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777776654333444444433 344445544444433 34577888887777777776554433444
Q ss_pred HHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 642 LMQIQAQNEEFSAIFNL-----EDYRASREKCYKQIQAAIAKYREIKEN 685 (878)
Q Consensus 642 l~~I~~~n~~f~~~~~~-----~~~~~~re~~l~~L~~A~~~y~el~~n 685 (878)
.-...+.|..|...++. +.....++++- .|+.+......|+++
T Consensus 1724 EaaWDeaW~~F~r~~~~~~~S~e~~~~A~~~a~-aLQas~~~V~~Lrad 1771 (3151)
T PHA03247 1724 EAEWDEVWGRFGRVRGGAWKSPEALRAAREQLR-ALQTATNTVLGLRAD 1771 (3151)
T ss_pred HHHHHHHHHHHHHhccccccChHHHHHHHHHHH-HHHHHHHHHHhhhcc
Confidence 44666778888776531 22233333322 455555555555444
No 30
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=96.18 E-value=0.083 Score=58.18 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 002807 676 IAKYREIKENINEGLKFYVTLQ 697 (878)
Q Consensus 676 ~~~y~el~~nl~eG~~FY~~L~ 697 (878)
.....+|...|.+++.-|++|.
T Consensus 344 ~~eL~~Ln~~l~~Al~lY~kLm 365 (462)
T KOG2199|consen 344 HEELSQLNVKLLDALRLYNKLM 365 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777888888773
No 31
>PHA03247 large tegument protein UL36; Provisional
Probab=96.05 E-value=0.12 Score=68.49 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002807 504 TKNLQDRLNRFAGNLKQAAESDARIERSVRD 534 (878)
Q Consensus 504 ~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~ 534 (878)
.-.+..+|..+|-.+++|..++-.++.+|=-
T Consensus 1996 A~~vl~eI~~LRl~~~~A~~~gF~~F~rFVR 2026 (3151)
T PHA03247 1996 AMCTVPLITRLQLALSDAQGAGFRLFGRFVR 2026 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 3366788888888888888888877776543
No 32
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=95.55 E-value=0.44 Score=59.04 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHccc
Q 002807 50 LEDDLETVKQLRSDVER 66 (878)
Q Consensus 50 ~~~dl~~l~~lR~~~~~ 66 (878)
-+.+|.+|.-+=.++++
T Consensus 489 tkAEl~EL~~vpkQiis 505 (1605)
T KOG0260|consen 489 TKAELEELAMVPKQIIS 505 (1605)
T ss_pred HHHHHHHHhhhhhhhcC
Confidence 35667777666666654
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.46 E-value=2.4 Score=52.93 Aligned_cols=184 Identities=14% Similarity=0.219 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHH
Q 002807 506 NLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLG 583 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~ 583 (878)
....+++.....+....+-=..+.++++.-...+..+. ..++++.+-....-..-.|.........|+.+...+.+++
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444444444444444444333 2233332211110000011222344555556666666667
Q ss_pred HHHHHHHHHHHHhhccCCchhHHhhcCC-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchhH
Q 002807 584 AQRAGLEDMLKEMKRKDDILPKLMTSAG-SYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAI-FNLEDY 661 (878)
Q Consensus 584 ~qR~~l~~~lk~~~~~ddI~~kLi~~~~-~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~-~~~~~~ 661 (878)
.+-......++......|...+.|.+.. ....-...++.+-..-.+.|...+.+=+.++..|....++|... +...+.
T Consensus 358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7777777777777667777777776532 11123334443333334444444444455666666666665442 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002807 662 RASREKCYKQIQAAIAKYREIKENINEG 689 (878)
Q Consensus 662 ~~~re~~l~~L~~A~~~y~el~~nl~eG 689 (878)
...++.-+..|..+...+.+...+|..+
T Consensus 438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 438 KEHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334455556666655555544444443
No 34
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.38 E-value=9 Score=46.28 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=86.7
Q ss_pred HHHHHHHhhHHHHHHHHhcCCchHHHh-hhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 399 QAEKLQQGSELTRVRLKEMDLPDSILA-LEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELL 477 (878)
Q Consensus 399 ~~~~~~~~~~~l~~~L~~l~LP~~l~~-l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L 477 (878)
....+.....++++.+..|+.+-.+.- .++ .-..|.++...|... +.+|+..-.+...+..+++
T Consensus 66 L~~~ia~~eael~~l~s~l~~~~~~~~~~~k---~e~tLke~l~~l~~~------------le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 66 LLQEIAVIEAELNDLCSALGEPSIIGEISDK---IEGTLKEQLESLKPY------------LEGLRKQKDERRAEFKELY 130 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccc---cCccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888888654332 111 111455555544322 3333333333344444444
Q ss_pred HHHHhHHHHHHHhhCC--CCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC-------hhhhH
Q 002807 478 QKEATEDAQFRSQFGT--RWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD-------RRPIE 548 (878)
Q Consensus 478 ~~E~~eD~~~R~kyG~--~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~-------~~~l~ 548 (878)
.+-+.-++.+=..++. .-..-.+ .---.+++.|+..|.+..+--..=.+++.+....|..|| ...+.
T Consensus 131 ~qie~l~~~l~g~~~~~~~~~~D~~----dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt 206 (660)
T KOG4302|consen 131 HQIEKLCEELGGPEDLPSFLIADES----DLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVT 206 (660)
T ss_pred HHHHHHHHHhcCCccCCcccccCcc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh
Confidence 4433333333322221 1111111 111145555555555555433333344444444444433 11111
Q ss_pred hhCCCCCcC----cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002807 549 SALPTLARP----IMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKR 598 (878)
Q Consensus 549 ~~lP~~~~p----~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~ 598 (878)
..=|+.... ... -..+-+..|..++.+|.+.+.+|..-++.|...+.
T Consensus 207 ~~~~sL~~~~~~~~~~---is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~ 257 (660)
T KOG4302|consen 207 DVEPSLVDHDGEQSRS---ISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLL 257 (660)
T ss_pred hhhhhhhhccCccccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222110 011 11467888888999999999999988888877653
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.37 E-value=9.1 Score=46.26 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=23.9
Q ss_pred cchHhHHHHHHHHHHHHHHH-HHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHh
Q 002807 249 HFDKAWVTHVQLKAALFYAE-ACYRYSLELHEKEEIAEEIARLKSGISALTEAK 301 (878)
Q Consensus 249 ~~~~~w~~~~~~K~~~f~A~-A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~ 301 (878)
.|..+|..++... |..+ -+.+-|..+.++-++..|=.-+..+.+.+..+.
T Consensus 68 ~w~~~~~~i~~~~---~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e 118 (569)
T PRK04778 68 EWRQKWDEIVTNS---LPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIE 118 (569)
T ss_pred HHHHHHHHHHHhh---hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3556776655432 2222 233344444444455555555555555555443
No 36
>PF13514 AAA_27: AAA domain
Probab=95.11 E-value=17 Score=47.78 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHh
Q 002807 469 LLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAE 523 (878)
Q Consensus 469 ~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~ 523 (878)
.+..++..++.=+.+-..+-..+|..|...+.......++..++..+........
T Consensus 751 ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~ 805 (1111)
T PF13514_consen 751 RIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERER 805 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555667777777666555445556677666666655444433
No 37
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=95.08 E-value=9 Score=44.62 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHhcccccc
Q 002807 714 RNIQCREMIEDVQRQMAGLNF 734 (878)
Q Consensus 714 R~~E~~~L~~~l~~~~~~~~~ 734 (878)
-+++-.+...+++++|..|--
T Consensus 266 ~~~qh~~~~q~~q~q~~~~e~ 286 (757)
T KOG4368|consen 266 LKTQHEEFVQQQQQQMPQMEA 286 (757)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 345556666677776666543
No 38
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.91 E-value=0.57 Score=50.70 Aligned_cols=13 Identities=8% Similarity=-0.048 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCCC
Q 002807 740 SGSYDGSYPTVGQ 752 (878)
Q Consensus 740 ~~~~~~~~~~~~~ 752 (878)
++++++..-..|+
T Consensus 204 G~~~~~~sG~~GP 216 (498)
T KOG4849|consen 204 GRTGTSVSGRSGP 216 (498)
T ss_pred CCcCCCCCCCCCC
Confidence 3455444433333
No 39
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.72 E-value=13 Score=44.74 Aligned_cols=101 Identities=12% Similarity=0.202 Sum_probs=56.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 002807 386 SRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRV 465 (878)
Q Consensus 386 s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~ 465 (878)
..|+..=+.|+...+..|+..=..+......+++-.+-..+. .+.+.+..+. ..+..|...++.|.+....
T Consensus 63 e~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~-------~~~~~l~~~e--~~i~~i~~~l~~L~~~e~~ 133 (560)
T PF06160_consen 63 EEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIK-------EIEEQLDEIE--EDIKEILDELDELLESEEK 133 (560)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 345555556666555555555555555555555533322222 1222222222 2255566666666666677
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhCCCC
Q 002807 466 NQELLVQTEELLQKEATEDAQFRSQFGTRW 495 (878)
Q Consensus 466 ~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W 495 (878)
++..+.+++...+.=.++=...|..||..|
T Consensus 134 nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~ 163 (560)
T PF06160_consen 134 NREEIEELKEKYRELRKELLAHSFSYGPAI 163 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhH
Confidence 777777777777666666666777888644
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.64 E-value=22 Score=46.90 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002807 674 AAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQR 727 (878)
Q Consensus 674 ~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~ 727 (878)
.|++.|.++...+.+...=|.+|.+....|+..+.++-..++..-.+.-..+..
T Consensus 967 ~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~ 1020 (1163)
T COG1196 967 RAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINE 1020 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999988877666655555554444
No 41
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=94.50 E-value=0.96 Score=54.04 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHh
Q 002807 221 GVCAKISRQVGLYYEEALGAL 241 (878)
Q Consensus 221 ~liAKLA~qv~~~Y~~a~~~l 241 (878)
..|.|.|+.+.++|+.....+
T Consensus 27 ~~ITkaAikaIk~ykhVVqsV 47 (894)
T KOG0132|consen 27 LKITKAAIKAIKLYKHVVQSV 47 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888776554
No 42
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=94.13 E-value=1.6 Score=54.32 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHhhhh
Q 002807 262 AALFYAEACYRYSLELHE 279 (878)
Q Consensus 262 ~~~f~A~A~y~~a~~~~e 279 (878)
..+|..++....+-.+.+
T Consensus 641 ~~f~~~iQ~lin~wll~~ 658 (1605)
T KOG0260|consen 641 RGFFDSIQTLINSWLLRE 658 (1605)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 355666665555444443
No 43
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=93.81 E-value=0.39 Score=53.14 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=4.7
Q ss_pred ChhHHHHHHHH
Q 002807 433 PADLKEEVEAV 443 (878)
Q Consensus 433 P~~l~~~~~~i 443 (878)
|+.|.++++.+
T Consensus 49 p~qi~~~m~kl 59 (487)
T KOG4672|consen 49 PDQITSKMEKL 59 (487)
T ss_pred HHHHHHHHHhh
Confidence 34444444444
No 44
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=0.88 Score=56.49 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 002807 127 EKAAVLFNLGAVY 139 (878)
Q Consensus 127 Eka~VLfNiaal~ 139 (878)
|.-|+=+|-..-|
T Consensus 163 eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSH 175 (1049)
T ss_pred cceEeccchhhhH
Confidence 4444445544433
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.16 E-value=32 Score=43.71 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 668 CYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMT 713 (878)
Q Consensus 668 ~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~ 713 (878)
.-..+..+-+...|+++-+..-..+|.++....+.|....-|+++.
T Consensus 975 ~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K 1020 (1293)
T KOG0996|consen 975 LEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENK 1020 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3356777778888888888889999999999999998844446544
No 46
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=93.08 E-value=2.2 Score=51.19 Aligned_cols=12 Identities=0% Similarity=0.152 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 002807 701 TNIKQQCSDFVM 712 (878)
Q Consensus 701 ~~l~~~v~df~~ 712 (878)
.+|....+.||.
T Consensus 517 ~kLt~dl~~~~e 528 (894)
T KOG0132|consen 517 EKLTDDLEAWCE 528 (894)
T ss_pred HhcCHHHHHhhh
Confidence 444444555654
No 47
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.91 E-value=36 Score=45.47 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=30.3
Q ss_pred CChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 432 LPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQK 479 (878)
Q Consensus 432 lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~ 479 (878)
=|..+.+.+..|- |+..+....+.+..++......+...+..|.-
T Consensus 167 ~~~~rk~~~d~if---~~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~ 211 (1311)
T TIGR00606 167 EGKALKQKFDEIF---SATRYIKALETLRQVRQTQGQKVQEHQMELKY 211 (1311)
T ss_pred ChHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666664 67777777777777777777777766555443
No 48
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.76 E-value=29 Score=42.03 Aligned_cols=28 Identities=7% Similarity=0.213 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 002807 510 RLNRFAGNLKQAAESDARIERSVRDHSA 537 (878)
Q Consensus 510 ~l~k~~~~L~~A~~sD~~v~~k~~~~~~ 537 (878)
.+.++++.++.+.+-=..|..+|+.++.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777777754
No 49
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.57 E-value=33 Score=42.24 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=11.0
Q ss_pred cCChhHHHHHHHHHHHHH
Q 002807 446 SGGPAALEAELQQLRDLR 463 (878)
Q Consensus 446 ~gg~~~l~~~l~~l~~l~ 463 (878)
-.|+..+..+..+|..+.
T Consensus 178 LlGl~~~~~L~~dl~~~~ 195 (650)
T TIGR03185 178 LLGLDLIDRLAGDLTNVL 195 (650)
T ss_pred HhCcHHHHHHHHHHHHHH
Confidence 356666666666666554
No 50
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=92.03 E-value=2.6 Score=50.58 Aligned_cols=11 Identities=0% Similarity=-0.009 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 002807 701 TNIKQQCSDFV 711 (878)
Q Consensus 701 ~~l~~~v~df~ 711 (878)
.++...|+.++
T Consensus 223 ~k~~~~~e~~l 233 (830)
T KOG1923|consen 223 QKLSIEKERSL 233 (830)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 51
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.03 E-value=35 Score=41.39 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=62.8
Q ss_pred hHHHHHHHhhCCCCCC-CCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcChhhhH--hhCCCCCcCc
Q 002807 482 TEDAQFRSQFGTRWTR-PQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIE--SALPTLARPI 558 (878)
Q Consensus 482 ~eD~~~R~kyG~~W~r-~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~~~~l~--~~lP~~~~p~ 558 (878)
.+...+...-|..=.+ .-+..--.+|++.+.++..+|++=..-+..=+..|.+...-|+-||. +|- ..+|... +
T Consensus 75 ael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~-~l~g~~~~~~~~--~ 151 (660)
T KOG4302|consen 75 AELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE-ELGGPEDLPSFL--I 151 (660)
T ss_pred HHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccCCccc--c
Confidence 3344455555541111 11233334789999999999887776666555556666555655551 110 1111111 1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002807 559 MSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKR 598 (878)
Q Consensus 559 ~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~ 598 (878)
.+..+-..+.+.+|+.-|..|...+..|-.-+..++..++
T Consensus 152 ~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~ 191 (660)
T KOG4302|consen 152 ADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIK 191 (660)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1101111456777777888888888888777777776653
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.03 E-value=38 Score=41.80 Aligned_cols=220 Identities=14% Similarity=0.241 Sum_probs=116.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH-------HhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHH
Q 002807 502 TLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSAL-------MSILD--RRPIESALPTLARPIMSLDATEDAIVGAL 572 (878)
Q Consensus 502 ~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~-------l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~L 572 (878)
.....|..+|++++.-|......+..++.++...... |.-|- .++|...+-+... .-......|
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~-------aRq~DKq~l 490 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ-------ARQQDKQSL 490 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 4445799999999999999999999999886543221 11121 2444443322210 001223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC----C-chhHHhhcCC---ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002807 573 KQSLRQLETLGAQRAGLEDMLKEMKRKD----D-ILPKLMTSAG---SYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQ 644 (878)
Q Consensus 573 r~ll~~l~~l~~qR~~l~~~lk~~~~~d----d-I~~kLi~~~~---~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~ 644 (878)
..+=.+|.+....|..++.+|.+.-... . -...+..... +-.+......+-.+.-+..+...+..-++-+..
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~ 570 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRE 570 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777888888888887653211 1 0000000000 011112221111112222222222222222222
Q ss_pred HHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHH
Q 002807 645 IQAQNEEFSAIFNL-EDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSD---FVMTRNIQCRE 720 (878)
Q Consensus 645 I~~~n~~f~~~~~~-~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~d---f~~~R~~E~~~ 720 (878)
+.....++ +.. .+...+.|.++..|..-=++=..|-.+|..-+++=-||...|++-+.+++. -+..|..|..+
T Consensus 571 ~e~~~~~l---r~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~ 647 (697)
T PF09726_consen 571 LESELQEL---RKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEE 647 (697)
T ss_pred HHHHHHHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 211 112344555566666555666677888888888999999999999888765 45567777777
Q ss_pred HHHHHHHhccc
Q 002807 721 MIEDVQRQMAG 731 (878)
Q Consensus 721 L~~~l~~~~~~ 731 (878)
|...|.+-++=
T Consensus 648 lk~ki~~~~av 658 (697)
T PF09726_consen 648 LKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHhc
Confidence 77777654443
No 53
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.56 E-value=39 Score=40.91 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 002807 387 RYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVN 466 (878)
Q Consensus 387 ~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~ 466 (878)
.|+..-+.|+...+..|+..=..+...+..+++-.+-..+. .+.+.+..+. ..+..|...++.|.+....+
T Consensus 68 ~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~-------~~~~~l~~~e--~~~~~i~~~l~~l~~~e~~n 138 (569)
T PRK04778 68 EWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEIN-------EIESLLDLIE--EDIEQILEELQELLESEEKN 138 (569)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666555556666665543333222 1122222221 12444555555566666666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhCCCC
Q 002807 467 QELLVQTEELLQKEATEDAQFRSQFGTRW 495 (878)
Q Consensus 467 ~~~L~e~~~~L~~E~~eD~~~R~kyG~~W 495 (878)
+..+.+++..-+.=.+.=-..|-.||..|
T Consensus 139 r~~v~~l~~~y~~~rk~ll~~~~~~G~a~ 167 (569)
T PRK04778 139 REEVEQLKDLYRELRKSLLANRFSFGPAL 167 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccchH
Confidence 66666666655554444445566677543
No 54
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.29 E-value=39 Score=40.45 Aligned_cols=109 Identities=12% Similarity=0.206 Sum_probs=66.0
Q ss_pred HHHHHH--HHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcChhhhHhhC
Q 002807 474 EELLQK--EATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESAL 551 (878)
Q Consensus 474 ~~~L~~--E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~~~~l~~~l 551 (878)
+.+|.+ ...+++.+|.+-.. ..-+.+...|.++|..+.+.+..+..--..++..++..+. +|.+.|
T Consensus 376 ka~lee~~~n~~~e~~~~k~~~----s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~--------ela~~l 443 (961)
T KOG4673|consen 376 KAMLEEEQLNSVTEDLKRKSNE----SEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKK--------ELAAAL 443 (961)
T ss_pred HHHHHHHHhhhHHHHHHHHhhc----ccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHhh
Confidence 344444 23466677776543 1234567789999999999888887666566665555443 444455
Q ss_pred CCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002807 552 PTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKD 600 (878)
Q Consensus 552 P~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~d 600 (878)
++.- -...+++|+.|..--++|..-.-....++..||.+....
T Consensus 444 ~~De------LaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~ 486 (961)
T KOG4673|consen 444 LKDE------LAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA 486 (961)
T ss_pred hhHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 4411 113356666666666666666666677777777665543
No 55
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.19 E-value=43 Score=42.26 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 002807 696 LQDAITNIKQQC 707 (878)
Q Consensus 696 L~~~l~~l~~~v 707 (878)
|+.++.++...+
T Consensus 355 LElLllrLll~~ 366 (824)
T PRK07764 355 LELLCARMLLPS 366 (824)
T ss_pred HHHHHHHHHhhc
Confidence 444444444433
No 56
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=7.1 Score=47.71 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=5.2
Q ss_pred HhccccccC
Q 002807 727 RQMAGLNFQ 735 (878)
Q Consensus 727 ~~~~~~~~~ 735 (878)
..+..++++
T Consensus 29 ~~~~~~~~~ 37 (1007)
T KOG1984|consen 29 QAMPNGSIN 37 (1007)
T ss_pred hhccCCccC
Confidence 445666665
No 57
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.71 E-value=41 Score=39.68 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 002807 505 KNLQDRLNRFAGNLKQAAESDARIERSVRDHSA 537 (878)
Q Consensus 505 ~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~ 537 (878)
+.++++++||+.++.+=..-......+++....
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~ 301 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKS 301 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 358899999999988766655555555554433
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.51 E-value=60 Score=41.25 Aligned_cols=90 Identities=12% Similarity=0.242 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHH
Q 002807 628 CEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREI-------KENINEGLKFYVTLQDAI 700 (878)
Q Consensus 628 ~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el-------~~nl~eG~~FY~~L~~~l 700 (878)
+..|...+..+..-|+.|......+...++- .--.++..|...+..|.-- .=.|.+| +|-......|
T Consensus 445 i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~-----~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~-KWa~aIE~~L 518 (1074)
T KOG0250|consen 445 ILQLRKKIENISEELKDLKKTKTDKVSAFGP-----NMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEP-KWALAIERCL 518 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhcch-----hhHHHHHHHHHHHhcCCCCCCCCccceeEecCc-HHHHHHHHHH
Confidence 3344455555555556665555444444431 1223445555554443110 0014455 7878888888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002807 701 TNIKQQCSDFVMTRNIQCREMIEDVQ 726 (878)
Q Consensus 701 ~~l~~~v~df~~~R~~E~~~L~~~l~ 726 (878)
+++.+. ||-.-..+..-|..-++
T Consensus 519 ~n~lna---Fiv~sh~D~~~Lr~i~~ 541 (1074)
T KOG0250|consen 519 GNLLNA---FIVTSHKDARILRAIMR 541 (1074)
T ss_pred HHhhhh---heeCCHhhHHHHHHHHH
Confidence 888775 77766666655544443
No 59
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=90.26 E-value=56 Score=42.84 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=16.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 447 GGPAALEAELQQLRDLRRVNQELLVQTEELLQ 478 (878)
Q Consensus 447 gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~ 478 (878)
.|+..+........+.-.++.+++.++...|.
T Consensus 165 ~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 165 AGISKYKERRKETERKLERTRENLDRLEDILN 196 (1179)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555544444444555555555555444
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.25 E-value=46 Score=39.50 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhCC
Q 002807 464 RVNQELLVQTEELLQKEATEDAQFRSQFGT 493 (878)
Q Consensus 464 ~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~ 493 (878)
...+..+++.+..|.....+.+.++.+++.
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666677777777777766653
No 61
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.54 E-value=13 Score=44.84 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=5.1
Q ss_pred CChhHHHHHHHH
Q 002807 432 LPADLKEEVEAV 443 (878)
Q Consensus 432 lP~~l~~~~~~i 443 (878)
.|+.+-..+..+
T Consensus 17 ~p~A~~~ia~S~ 28 (830)
T KOG1923|consen 17 VPPAIACIANSS 28 (830)
T ss_pred CchHHHHhhHhh
Confidence 444444444333
No 62
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=89.40 E-value=2.6 Score=49.35 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 002807 672 IQAAIAKYREIKENINEG 689 (878)
Q Consensus 672 L~~A~~~y~el~~nl~eG 689 (878)
+..|-+...||.+...+|
T Consensus 287 ie~Aa~lI~eii~~~~~~ 304 (600)
T KOG1676|consen 287 IEHAAELINEIIAEAEAG 304 (600)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 333333344444444443
No 63
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.37 E-value=60 Score=39.60 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMK 597 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~ 597 (878)
+..+..+.++..|.++.++|+.-++.+|..+
T Consensus 372 e~k~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 372 EKKENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556677788888899999999998865
No 64
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.14 E-value=63 Score=39.47 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH
Q 002807 506 NLQDRLNRFAGNLKQAAESDARIERSVRDHSAL 538 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~ 538 (878)
.+|..+.++++--..-..+...|..++.+++.-
T Consensus 246 p~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~k 278 (1265)
T KOG0976|consen 246 PLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAK 278 (1265)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555554455555555555555443
No 65
>PRK10263 DNA translocase FtsK; Provisional
Probab=89.13 E-value=0.83 Score=58.46 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=5.2
Q ss_pred HHhhCCCCCCC
Q 002807 488 RSQFGTRWTRP 498 (878)
Q Consensus 488 R~kyG~~W~r~ 498 (878)
|.++|. |..+
T Consensus 520 ~~~~~~-~~~~ 529 (1355)
T PRK10263 520 REQLAA-WYQP 529 (1355)
T ss_pred cccccc-cccC
Confidence 555665 4443
No 66
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=88.58 E-value=2.2 Score=49.89 Aligned_cols=7 Identities=0% Similarity=0.283 Sum_probs=3.1
Q ss_pred Hhccccc
Q 002807 727 RQMAGLN 733 (878)
Q Consensus 727 ~~~~~~~ 733 (878)
-++.+..
T Consensus 385 ~kvg~~~ 391 (600)
T KOG1676|consen 385 DKVGDIA 391 (600)
T ss_pred HHhcccC
Confidence 3444444
No 67
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=88.39 E-value=33 Score=37.52 Aligned_cols=86 Identities=12% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCC------hHH---HHHHHHhhhhHHHHHHHHHHH
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS------YED---LFRKEISKYDHICEEIAQNIE 636 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~------~e~---lf~~eL~kf~~l~~~I~~~~~ 636 (878)
...+..+....+.|+........++.+|+...... ....+. -+. -+.....+|..+...|.+.+.
T Consensus 196 ~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~------~~~~~~~~~~~~r~~~~~~l~~a~~~y~el~~~l~eG~~ 269 (296)
T PF13949_consen 196 EEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEF------AQSRKSDQEQKERESALQRLEAAYDAYKELSSNLEEGLK 269 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56677788899999999999999999998864221 111111 122 245556788889999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHhhh
Q 002807 637 AQEQLLMQIQAQ---NEEFSAIFN 657 (878)
Q Consensus 637 ~Q~~Ll~~I~~~---n~~f~~~~~ 657 (878)
....|...+... ..+|+..|+
T Consensus 270 FY~~L~~~~~~l~~~~~~f~~~R~ 293 (296)
T PF13949_consen 270 FYNDLLEILNKLQQKVEDFCNARR 293 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888766553 445655443
No 68
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.14 E-value=1e+02 Score=40.82 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002807 700 ITNIKQQCSDFVMTRNIQCREMIEDVQ 726 (878)
Q Consensus 700 l~~l~~~v~df~~~R~~E~~~L~~~l~ 726 (878)
++.+...|.+++..|.....++...++
T Consensus 897 ~~~~~~~~~~~~~~~~~l~~~l~~~~~ 923 (1201)
T PF12128_consen 897 VDERLRDLEDLLQRRKRLREELKKAVE 923 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888877776666654443
No 69
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.13 E-value=5.1 Score=46.36 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=50.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCc
Q 002807 251 DKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKG 306 (878)
Q Consensus 251 ~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~ 306 (878)
|+....-+.+|..||+|.=|++.|..+...++|.||+|-+-.|.+.++++.+..+.
T Consensus 406 D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s 461 (593)
T KOG2460|consen 406 DKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELES 461 (593)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 56788889999999999999999999999999999999999999999988765443
No 70
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.12 E-value=2.5 Score=54.32 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=2.6
Q ss_pred hHHHHH
Q 002807 253 AWVTHV 258 (878)
Q Consensus 253 ~w~~~~ 258 (878)
+|..++
T Consensus 182 SwlsIl 187 (1355)
T PRK10263 182 SWVTIA 187 (1355)
T ss_pred HHHHHH
Confidence 354443
No 71
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=86.73 E-value=1.4e+02 Score=40.92 Aligned_cols=90 Identities=10% Similarity=0.162 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002807 627 ICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQ 706 (878)
Q Consensus 627 l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~ 706 (878)
+.+.+++....-..|+..+...+.+-...+.. ...........+..+-....+-.+.+.+-+.+.+.....+.+.+.+
T Consensus 1334 l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k--~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~ 1411 (1930)
T KOG0161|consen 1334 LREQLEEEQEAKNELERKLSKANAELAQWKKK--FEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNR 1411 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555544333221 0111122233444444445555555555555555555555555555
Q ss_pred HHHHHHhhHHHH
Q 002807 707 CSDFVMTRNIQC 718 (878)
Q Consensus 707 v~df~~~R~~E~ 718 (878)
+...+..+..+.
T Consensus 1412 l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1412 LQQELEDLQLDL 1423 (1930)
T ss_pred HHhHHHHHHHHH
Confidence 444444444443
No 72
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=86.56 E-value=3.6 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002807 566 DAIVGALKQSLRQLETLGAQRA 587 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~ 587 (878)
.+...-|..||++|+.++.+-.
T Consensus 40 ~e~~~~~~~Ll~~lE~~K~~~~ 61 (380)
T PF04652_consen 40 KECRQFLTSLLDKLEKMKAELG 61 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-
T ss_pred hhHHHHHHHHHHHHHHhhhccC
Confidence 3455566668888877765433
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.06 E-value=1.1e+02 Score=38.75 Aligned_cols=263 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHH
Q 002807 433 PADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLN 512 (878)
Q Consensus 433 P~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~ 512 (878)
|++|+.-+++- .|....+..-..-..+-..=+..|+|+..+|++| ..+...+|+
T Consensus 158 p~EILsMvEEA---AGTrmye~kKe~A~ktiekKetKlkEi~~lL~ee-----------------------I~P~l~KLR 211 (1174)
T KOG0933|consen 158 PSEILSMVEEA---AGTRMYENKKEAAEKTIEKKETKLKEINTLLREE-----------------------ILPRLEKLR 211 (1174)
T ss_pred cHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHh--HHHHhhcC-hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 513 RFAGNLKQAAESDARIERSVRDH--SALMSILD-RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGL 589 (878)
Q Consensus 513 k~~~~L~~A~~sD~~v~~k~~~~--~~~l~~L~-~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l 589 (878)
.=++...+-+.....+...-.-. .+.+..-. ...+...+-.....+..++......-.++..+=+++.+|..+|+.-
T Consensus 212 ~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~e 291 (1174)
T KOG0933|consen 212 EERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAE 291 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-HHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 002807 590 EDML-KEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKC 668 (878)
Q Consensus 590 ~~~l-k~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~ 668 (878)
+... +......+-...+++...+.-.+..+-|..-..-...|..++...+..|.+=......- ........+.
T Consensus 292 m~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~------~~~~~~~ke~ 365 (1174)
T KOG0933|consen 292 MGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKV------EEGYEKLKEA 365 (1174)
T ss_pred hchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhh------hhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002807 669 YKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQR 727 (878)
Q Consensus 669 l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~ 727 (878)
.+++..++..+.++.+.|..|+.==++-..-+..-...|++-+..-+.+.......+++
T Consensus 366 ~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~ 424 (1174)
T KOG0933|consen 366 FQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEH 424 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 74
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.83 E-value=1e+02 Score=38.35 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARI 528 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v 528 (878)
+..|.+.|+.+...+.+....|.|.+++-= +-+.-+++|.|.-. .-..|..+|.+-|.-.++|.+.-...
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~Elekmki-qleqlqEfkSkim~---------qqa~Lqrel~raR~e~keaqe~ke~~ 302 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELEKMKI-QLEQLQEFKSKIME---------QQADLQRELKRARKEAKEAQEAKERY 302 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666665544311 11122335554321 23468888888888899999988888
Q ss_pred HHHHHHhHHHHhhcC
Q 002807 529 ERSVRDHSALMSILD 543 (878)
Q Consensus 529 ~~k~~~~~~~l~~L~ 543 (878)
+.-+.++.+.|++++
T Consensus 303 k~emad~ad~iEmaT 317 (1243)
T KOG0971|consen 303 KEEMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999998888766
No 75
>PRK02224 chromosome segregation protein; Provisional
Probab=85.80 E-value=1.2e+02 Score=38.90 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhc
Q 002807 505 KNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSIL 542 (878)
Q Consensus 505 ~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L 542 (878)
..+...+..++..+..+.+....+...+..+...+..+
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666667666666666666666665555544
No 76
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=85.14 E-value=14 Score=41.47 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 452 LEAELQQLRDLRRVNQELLVQTEE 475 (878)
Q Consensus 452 l~~~l~~l~~l~~~~~~~L~e~~~ 475 (878)
|-..+-+|..|++-++++..|+-.
T Consensus 34 LaniIRQLsSLSKhAEdIFGELf~ 57 (518)
T KOG1830|consen 34 LANIIRQLSSLSKHAEDIFGELFN 57 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777765443
No 77
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=84.85 E-value=7.6 Score=43.40 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 002807 461 DLRRVNQELLVQTE 474 (878)
Q Consensus 461 ~l~~~~~~~L~e~~ 474 (878)
+.+++.++.++.+.
T Consensus 81 dkrKK~rEtfer~~ 94 (487)
T KOG4672|consen 81 DKRKKRRETFERGK 94 (487)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444333
No 78
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=84.84 E-value=32 Score=38.84 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 002807 449 PAALEAELQQLRDLRR 464 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~ 464 (878)
+.+|...|..|.+-.+
T Consensus 34 LaniIRQLsSLSKhAE 49 (518)
T KOG1830|consen 34 LANIIRQLSSLSKHAE 49 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 79
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.78 E-value=1.3e+02 Score=38.50 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcChhh
Q 002807 467 QELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRP 546 (878)
Q Consensus 467 ~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~~~~ 546 (878)
...|++.+..|+.=+.+=..++..|+.. ...+..++.+..++++.|..-...=..+...+.+....|.. ++.
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~------~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~--~e~ 518 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQ------LEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE--EEE 518 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3334444444444333444455555531 24455677777777777764443333333333333332221 222
Q ss_pred hHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHh-hhh
Q 002807 547 IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEIS-KYD 625 (878)
Q Consensus 547 l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~-kf~ 625 (878)
+...+-.+ +...+.....+...++.....=..+...|..+...||--.. ...-|..+|. .+.
T Consensus 519 ii~~~~~s----------e~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~-------~~~~~~~~l~~~~~ 581 (1041)
T KOG0243|consen 519 IISQQEKS----------EEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQE-------VIDDFQSQLSENLS 581 (1041)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHH-------HHHHHhhhhhHHHH
Confidence 22222111 11222223334444455555555555555554433332111 1223444443 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 626 HICEEIAQNIEAQEQLLMQIQAQNEEFSAI 655 (878)
Q Consensus 626 ~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~ 655 (878)
.+-..+..+...|..++.........|...
T Consensus 582 ~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~ 611 (1041)
T KOG0243|consen 582 TLHGLVASSSSQQISQLTTMLAQMESFLSA 611 (1041)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhHHHhhh
Confidence 555666666666666666666655555443
No 80
>PHA03378 EBNA-3B; Provisional
Probab=84.77 E-value=13 Score=44.27 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 002807 524 SDARIERSVRD 534 (878)
Q Consensus 524 sD~~v~~k~~~ 534 (878)
+|-.|.+.+++
T Consensus 418 td~svi~~i~e 428 (991)
T PHA03378 418 TDPSVIKAIEE 428 (991)
T ss_pred cCHHHHHHHHH
Confidence 34444444443
No 81
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.48 E-value=1e+02 Score=37.21 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 569 VGALKQSLRQLETLGAQRAGLEDMLKE 595 (878)
Q Consensus 569 v~~Lr~ll~~l~~l~~qR~~l~~~lk~ 595 (878)
+...+.+-++++.|...-..+...+.+
T Consensus 343 ~~~~~~l~~~l~~l~~~~~~~~~~i~~ 369 (560)
T PF06160_consen 343 LEIVRELEKQLKELEKRYEDLEERIEE 369 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455556666666555555555543
No 82
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=84.42 E-value=66 Score=36.40 Aligned_cols=77 Identities=9% Similarity=0.108 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCC-----hHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS-----YEDLFRKEISKYDHICEEIAQNIEAQEQ 640 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~-----~e~lf~~eL~kf~~l~~~I~~~~~~Q~~ 640 (878)
.+.++......+.|+........++.+|+.. ++++...--..... .-+-++....+|..++..|.+.......
T Consensus 257 ~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~--n~~f~~~~~~~~~~~~re~~lq~L~~ay~~y~el~~nl~eG~kFY~d 334 (353)
T cd09236 257 DKRLAKYDKDLDAVSEEAQEQEEILQQIEVA--NKAFLQSRKGDPATKERERALQSLDLAYFKYKEIVSNLDEGRKFYND 334 (353)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788999999999999999999875 23332110000000 1122344445666677777777776666
Q ss_pred HHHH
Q 002807 641 LLMQ 644 (878)
Q Consensus 641 Ll~~ 644 (878)
|...
T Consensus 335 L~~~ 338 (353)
T cd09236 335 LAKI 338 (353)
T ss_pred HHHH
Confidence 6543
No 83
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.11 E-value=1.2e+02 Score=37.50 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc-CCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002807 569 VGALKQSLRQLE-TLGAQRAGLEDMLKEMKRK-DDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQ 646 (878)
Q Consensus 569 v~~Lr~ll~~l~-~l~~qR~~l~~~lk~~~~~-ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~ 646 (878)
+..+..+++.+. ....+...+.++++..... ++|..+|..... . ..+.+-.++...+...+.+....-+.+..+|.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~-~-e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS-E-EQIAQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555 3455555555555544332 334444433322 1 22222223333333444444333444444444
Q ss_pred HHH
Q 002807 647 AQN 649 (878)
Q Consensus 647 ~~n 649 (878)
...
T Consensus 453 ~~~ 455 (650)
T TIGR03185 453 TLK 455 (650)
T ss_pred HHH
Confidence 433
No 84
>PHA03378 EBNA-3B; Provisional
Probab=83.99 E-value=21 Score=42.46 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.4
Q ss_pred cccccC
Q 002807 730 AGLNFQ 735 (878)
Q Consensus 730 ~~~~~~ 735 (878)
...+|+
T Consensus 639 qp~~f~ 644 (991)
T PHA03378 639 QPITFN 644 (991)
T ss_pred cccccc
Confidence 334443
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.97 E-value=1e+02 Score=36.63 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhc-CCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 395 VIRTQAEKLQQGSELTRVRLKEM-DLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQT 473 (878)
Q Consensus 395 lvr~~~~~~~~~~~~l~~~L~~l-~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~ 473 (878)
.+.+.++.++.-+.+|...+.+. ..|+.++ ++.++.+.++. -++.++..+..+...++.....|...
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~e----------slre~~~~L~~--D~nK~~~y~~~~~~k~~~~~~~l~~l 299 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINEREKDPGKEE----------SLREKKARLQD--DVNKFQAYVSQMKSKKQHMEKKLEML 299 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHH----------HHHHHHHHHHh--HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455677777777776666643 2344333 34455555553 36666666766666666666666666
Q ss_pred HHHHHHHHhHHHHHHH
Q 002807 474 EELLQKEATEDAQFRS 489 (878)
Q Consensus 474 ~~~L~~E~~eD~~~R~ 489 (878)
...+.+-+.|.+.++.
T Consensus 300 ~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555554443
No 86
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.12 E-value=1.3e+02 Score=37.45 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002807 668 CYKQIQAAIAKYREIKENINEGLKFYVT 695 (878)
Q Consensus 668 ~l~~L~~A~~~y~el~~nl~eG~~FY~~ 695 (878)
.+-+.+..+.+|+|+..+|.+-++--.|
T Consensus 519 t~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 519 TVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888999999998887765444
No 87
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.05 E-value=1.5e+02 Score=37.94 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002807 507 LQDRLNRFAGNLKQAAESDARIERSV 532 (878)
Q Consensus 507 l~~~l~k~~~~L~~A~~sD~~v~~k~ 532 (878)
+.+...+++..++.++.--..+.+|+
T Consensus 530 l~~~a~~l~~~~~~s~~d~s~l~~kl 555 (1041)
T KOG0243|consen 530 LVDRATKLRRSLEESQDDLSSLFEKL 555 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556666666555444444443
No 88
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.70 E-value=1.8e+02 Score=38.59 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=4.3
Q ss_pred HhhHHHHHH
Q 002807 386 SRYTEMVDD 394 (878)
Q Consensus 386 s~Y~e~k~~ 394 (878)
+.|.+++.+
T Consensus 168 ~~y~~r~~e 176 (1163)
T COG1196 168 SKYKERKEE 176 (1163)
T ss_pred HHHHHHHHH
Confidence 445555444
No 89
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=81.99 E-value=44 Score=37.08 Aligned_cols=73 Identities=18% Similarity=0.341 Sum_probs=48.0
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 613 YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFN--LEDYRASREKCYKQIQAAIAKYREIKEN 685 (878)
Q Consensus 613 ~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~--~~~~~~~re~~l~~L~~A~~~y~el~~n 685 (878)
|++++...|++|-.+...|...+..|.+++.+.-.....|...-. .......-..+|+-|..++....+++++
T Consensus 49 fD~~i~~~l~~f~~~S~~igg~V~~~a~~v~~aF~~qr~~L~~as~~kKP~~~~~~~lL~Pl~~~i~~i~~~ke~ 123 (312)
T PF01213_consen 49 FDELINGPLKPFVELSKKIGGDVAEQAQLVKKAFQAQRKFLLVASKCKKPDQSELQELLKPLSEAIQKIQEFKEK 123 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHBE---HHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhHHHHHHHHHHHHHHHHHHHhc
Confidence 678888999999999999999999998888888777777754322 1222234455555566666555554443
No 90
>PRK10869 recombination and repair protein; Provisional
Probab=81.98 E-value=1.3e+02 Score=36.40 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=24.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q 002807 706 QCSDFVMTRNIQCREMIEDVQRQMAGLNFQDR 737 (878)
Q Consensus 706 ~v~df~~~R~~E~~~L~~~l~~~~~~~~~~~~ 737 (878)
.+...-..|+.....|...+...+.+|.|.+.
T Consensus 360 ~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~~a 391 (553)
T PRK10869 360 TAQKLHQSRQRYAKELAQLITESMHELSMPHG 391 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 33455567888889999999999999988753
No 91
>PRK03918 chromosome segregation protein; Provisional
Probab=81.95 E-value=1.6e+02 Score=37.55 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 433 PADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQ 478 (878)
Q Consensus 433 P~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~ 478 (878)
|....+.+..| -|++.+......+.+........+..+...+.
T Consensus 144 ~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 186 (880)
T PRK03918 144 DESREKVVRQI---LGLDDYENAYKNLGEVIKEIKRRIERLEKFIK 186 (880)
T ss_pred cHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 35666666666666666666666665555553
No 92
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.71 E-value=10 Score=33.05 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 261 KAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPK--GAAAQLLDAISKLEANLNRNLDRAVK 331 (878)
Q Consensus 261 K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k--~~~~~~~~~~~~l~~~i~~~l~~a~k 331 (878)
|..|=.|..+.-.|+...|.+.--.||++|+.|...|.++....- ......++....+++.+...+..+..
T Consensus 2 k~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~ 74 (79)
T cd02679 2 RGYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKT 74 (79)
T ss_pred chHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777888888888889999999999999999977643 22345667777788888777776654
No 93
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.19 E-value=11 Score=32.59 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKEND 334 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kdNd 334 (878)
.|..+...|..+...+++++||.+++.|.+.|-.+.+....-. . ...+.+.|+.-+++++.--.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~--~---k~~yr~ki~eY~~Rae~Lk~ 68 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP--T---RLIYEQMINEYKRRIEVLEK 68 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH--H---HHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999999999999999999999998877644321 1 22345556666666654433
No 94
>PHA03377 EBNA-3C; Provisional
Probab=81.08 E-value=15 Score=43.87 Aligned_cols=6 Identities=50% Similarity=0.805 Sum_probs=3.3
Q ss_pred CCCCCC
Q 002807 787 MVPGYG 792 (878)
Q Consensus 787 ~~~~~~ 792 (878)
|||||.
T Consensus 760 pYpGy~ 765 (1000)
T PHA03377 760 PYPGYW 765 (1000)
T ss_pred CCCccc
Confidence 555555
No 95
>PRK02224 chromosome segregation protein; Provisional
Probab=80.52 E-value=1.8e+02 Score=37.18 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.9
Q ss_pred hhhhhccCChHHHH
Q 002807 370 EKMFASLVPDSSAK 383 (878)
Q Consensus 370 ~dlF~~LvP~~V~e 383 (878)
..+|..|.-+...+
T Consensus 152 ~~ii~~l~~l~~~e 165 (880)
T PRK02224 152 QDMIDDLLQLGKLE 165 (880)
T ss_pred HHHHHHHhCCHHHH
Confidence 35677666654433
No 96
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=80.19 E-value=43 Score=39.26 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=9.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 002807 705 QQCSDFVMTRNIQCREMIEDV 725 (878)
Q Consensus 705 ~~v~df~~~R~~E~~~L~~~l 725 (878)
..+.+-+..-+.|.+.|.+.+
T Consensus 150 ~~mi~~i~~~~~Eir~Lr~~~ 170 (582)
T PF03276_consen 150 EQMIDDIGMQQREIRDLRETI 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444555554444
No 97
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.43 E-value=90 Score=33.09 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002807 639 EQLLMQIQAQNEEFSAIFN-LEDYRASREKCYKQIQAAIAKYREIKENINEGLKFY 693 (878)
Q Consensus 639 ~~Ll~~I~~~n~~f~~~~~-~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY 693 (878)
...+++|+..+.+...+-. +.....+|++..+.+...++.|.-+++.+++..+=|
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444332211 223345666666666666677777766666665544
No 98
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.41 E-value=1.3e+02 Score=35.02 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=13.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHH
Q 002807 561 LDATEDAIVGALKQSLRQLETL 582 (878)
Q Consensus 561 l~~~~~~~v~~Lr~ll~~l~~l 582 (878)
|..+|++.-.+|..++.+|+.=
T Consensus 409 L~~~EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 409 LTPDEEELRAKLDTLLAQLNAP 430 (508)
T ss_pred CCccHHHHHHHHHHHHHHhcCh
Confidence 4455666667777777776543
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.29 E-value=2.5e+02 Score=38.10 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Q 002807 691 KFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGL 732 (878)
Q Consensus 691 ~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~~~~~ 732 (878)
.++.+....+..+.....+....| .+.+.-+.+|..+|..+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~qL~~~i~~l 598 (1486)
T PRK04863 558 QLQEELEARLESLSESVSEARERR-MALRQQLEQLQARIQRL 598 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344455555555555555444333 33333445555555444
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.21 E-value=2.5e+02 Score=38.08 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC
Q 002807 506 NLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD 543 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~ 543 (878)
++...++.|.+.+.+....=..+..++......++.+.
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888887777777777777777766666555
No 101
>PHA03377 EBNA-3C; Provisional
Probab=79.03 E-value=27 Score=41.86 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=4.0
Q ss_pred HHHHHHhHHH
Q 002807 476 LLQKEATEDA 485 (878)
Q Consensus 476 ~L~~E~~eD~ 485 (878)
.+|-|..+++
T Consensus 514 vidvett~ee 523 (1000)
T PHA03377 514 VIDVETTEEE 523 (1000)
T ss_pred EEeccccccc
Confidence 3344444333
No 102
>PHA03369 capsid maturational protease; Provisional
Probab=78.79 E-value=25 Score=41.50 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHHHHhHHHHhhcC
Q 002807 521 AAESDARIERSVRDHSALMSILD 543 (878)
Q Consensus 521 A~~sD~~v~~k~~~~~~~l~~L~ 543 (878)
|.+.|...+.+|..-.+++++++
T Consensus 123 ~gd~~~e~~~kYhLp~~n~e~~~ 145 (663)
T PHA03369 123 AGDMDPEHMRKYHLPRENAEYMV 145 (663)
T ss_pred CCccChhHhhhccCchhhhhcee
Confidence 34555555556655555555555
No 103
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=78.17 E-value=40 Score=37.94 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 565 EDAIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 565 ~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
+.+.+.......+.|+......+.++.+|+..
T Consensus 242 F~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~ 273 (339)
T cd09238 242 FKEELKKYDSVREAVSKNISSQDDLLSRLRAL 273 (339)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888888888765
No 104
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=77.64 E-value=34 Score=33.99 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002807 662 RASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQ 705 (878)
Q Consensus 662 ~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~ 705 (878)
...-...+++|..-...+.++.+.|.+-++||..|......|..
T Consensus 44 T~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~ 87 (157)
T PF04136_consen 44 TNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNS 87 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcC
Confidence 34555667788888889999999999999999988776665543
No 105
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=77.58 E-value=2.4e+02 Score=37.03 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002807 674 AAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQR 727 (878)
Q Consensus 674 ~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~ 727 (878)
.|...|.++...+..-.+=+.+|.+....|...+.+.-..|+..-.+.-..|..
T Consensus 976 ~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~ 1029 (1164)
T TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINE 1029 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777776666555555444333333
No 106
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.57 E-value=14 Score=31.94 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=47.0
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSP-KGAAAQLLDAISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~-k~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~ 335 (878)
.|+.+-..|..+...++|.+||.+++.|.+.|..+.+.. +. +.. ...+...|..-++|++.--+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n--~~~---k~~ir~K~~eYl~RAE~Lk~~ 70 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLN--DSH---LKTIQEKSNEYLDRAQALHQL 70 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCC--hHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 467777889999999999999999999999998774332 22 221 233466777777777765544
No 107
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.96 E-value=98 Score=35.22 Aligned_cols=174 Identities=17% Similarity=0.238 Sum_probs=96.5
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHhhCC--CCCCCCchHhHHHHHHHHHHHH
Q 002807 445 ISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDA-------QFRSQFGT--RWTRPQSSTLTKNLQDRLNRFA 515 (878)
Q Consensus 445 ~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~-------~~R~kyG~--~W~r~~S~~l~~~l~~~l~k~~ 515 (878)
.+..-+.+.+++++|..| +.+++.|.+.+++|+++..|.. .++.+... +-.---+...+...+++|+.+|
T Consensus 237 nk~akehv~km~kdle~L-q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR 315 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGL-QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLR 315 (575)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH
Confidence 333344456666666655 3456667777777777665522 13333322 1111223455667778888999
Q ss_pred HHHHHHHhhHHHHHHHHHHhH------HHHhhcC-hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 516 GNLKQAAESDARIERSVRDHS------ALMSILD-RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAG 588 (878)
Q Consensus 516 ~~L~~A~~sD~~v~~k~~~~~------~~l~~L~-~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~ 588 (878)
..|+.|.. .++.+. .+=..|. .-+++...=.-.. .....+|+...+..+.|++.|..
T Consensus 316 ~~L~kAEk-------ele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkr---------qnaekql~~Ake~~eklkKKrss 379 (575)
T KOG4403|consen 316 VALEKAEK-------ELEANSSWSAPLALQKWLQLTHEVEVQYYNKKR---------QNAEKQLKEAKEMAEKLKKKRSS 379 (575)
T ss_pred HHHHHHHH-------HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHhhcc
Confidence 88888764 122221 0001111 1122211100000 12346777777888899999999
Q ss_pred HHHHHHHh--hccCCchhHHhhcCCChH---HHHHHHHhhhhHHHHHHHHHHHHHH
Q 002807 589 LEDMLKEM--KRKDDILPKLMTSAGSYE---DLFRKEISKYDHICEEIAQNIEAQE 639 (878)
Q Consensus 589 l~~~lk~~--~~~ddI~~kLi~~~~~~e---~lf~~eL~kf~~l~~~I~~~~~~Q~ 639 (878)
++..|+-. ..-||+-.+++......+ ....+.|.... +|+..+-.|.
T Consensus 380 v~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWq----QIE~lcGf~i 431 (575)
T KOG4403|consen 380 VFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQ----QIESLCGFQI 431 (575)
T ss_pred hheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCcee
Confidence 99988744 568999999998765443 35666666554 3444444443
No 108
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.98 E-value=3.3e+02 Score=37.74 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002807 452 LEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQF 487 (878)
Q Consensus 452 l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~ 487 (878)
.+..+..+..-+......|.+....++.++.....+
T Consensus 892 aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~l 927 (1930)
T KOG0161|consen 892 AEELLERLRAEKQELEKELKELKERLEEEEEKNAEL 927 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666666666655544433
No 109
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.76 E-value=2e+02 Score=34.57 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhH
Q 002807 261 KAALFYAEACYRYSL 275 (878)
Q Consensus 261 K~~~f~A~A~y~~a~ 275 (878)
|+..+.|+.+-..|.
T Consensus 40 KStll~aI~~~l~G~ 54 (562)
T PHA02562 40 KSTMLEALTFALFGK 54 (562)
T ss_pred HHHHHHHHHHHHcCC
Confidence 566666666555454
No 110
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=74.51 E-value=1.7e+02 Score=33.83 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002807 453 EAELQQLRDLRRVNQELLVQTEELLQKEATEDAQ 486 (878)
Q Consensus 453 ~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~ 486 (878)
++.|.....+-+++.+++..+...|.+-.....+
T Consensus 8 k~sL~~a~~vc~~An~~~~~ar~~l~~~~~~~~k 41 (412)
T PF04108_consen 8 KRSLSSAQHVCREANEILTSARQSLEESVPLSAK 41 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666677778888888888776554443
No 111
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=74.40 E-value=2.2e+02 Score=35.09 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=29.0
Q ss_pred HhhHHHHHHHHhcCCchHHHhhh--------cCCCCChhHHHHHHHHHh
Q 002807 405 QGSELTRVRLKEMDLPDSILALE--------GNMTLPADLKEEVEAVQI 445 (878)
Q Consensus 405 ~~~~~l~~~L~~l~LP~~l~~l~--------~~~~lP~~l~~~~~~i~~ 445 (878)
+-|.++..+..+++|-..|.+|. ...-+-+.|.++++.++.
T Consensus 470 E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~ 518 (762)
T PLN03229 470 EIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKD 518 (762)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 55677888888899988888776 222355667787776654
No 112
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.10 E-value=22 Score=29.83 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=46.4
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVK 331 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~k 331 (878)
.|+.....|..+.+.+++.+||-+++.|.+.|..+.+...+ ... -..+.+.+..-+++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~--~~~---~~~l~~k~~~yl~RAE~ 64 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESN--PER---RQALRQKMKEYLERAEK 64 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTT--HHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCC--HHH---HHHHHHHHHHHHHHHHH
Confidence 56677788999999999999999999999999988765432 121 22267777777787765
No 113
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.06 E-value=2.4e+02 Score=35.22 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=28.5
Q ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 002807 497 RPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSA 537 (878)
Q Consensus 497 r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~ 537 (878)
.+..+.+-+.|+++|+++++.|+.=+.+=.+++.+++....
T Consensus 627 ~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 627 LPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667899999999999887655555556666554433
No 114
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=73.63 E-value=53 Score=31.40 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 569 VGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQA 647 (878)
Q Consensus 569 v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~ 647 (878)
...+..-|.++..+...|...+..++.. .....+.+-|..-+++|+.+.+.|+..+..++.++.....
T Consensus 54 ae~a~~~L~~~~~~~~~i~e~~~kl~~~-----------~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 54 AEAAEAELAELKELYAEIEEKIEKLKQD-----------SKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777666553 1222467889999999999999999999999999876654
No 115
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=73.47 E-value=2e+02 Score=34.02 Aligned_cols=173 Identities=17% Similarity=0.167 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHH--hcCChhHHHHHHHHHHHHH-HHHHHHHHHH
Q 002807 397 RTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQ--ISGGPAALEAELQQLRDLR-RVNQELLVQT 473 (878)
Q Consensus 397 r~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~--~~gg~~~l~~~l~~l~~l~-~~~~~~L~e~ 473 (878)
....+++...++.++..+..|+-...+...+. .-=..||..+.... ....+..+.+.+..+..-+ ...+..|...
T Consensus 36 ~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~--~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~ 113 (473)
T PF14643_consen 36 EDLKQKLAESDEEIEEIFSKLEDDSALLEYSI--QDLLELWDEVAEHSQKRKQWIKELDEDLEELEKERADKLKKVLRKY 113 (473)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcCchhHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457777788888888888876644443331 00012333333311 1123444444444444333 2233344333
Q ss_pred H---------------HHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHH---HHHHHHHHHHHHHHH-hhHHHHHHHHHH
Q 002807 474 E---------------ELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNL---QDRLNRFAGNLKQAA-ESDARIERSVRD 534 (878)
Q Consensus 474 ~---------------~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l---~~~l~k~~~~L~~A~-~sD~~v~~k~~~ 534 (878)
. .++++|.. .+|..+ |..+.++-..|..+. +.....+.+|++
T Consensus 114 ~~~L~~ia~~~~~dv~rli~~ea~-------------------~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~~w~~ 174 (473)
T PF14643_consen 114 VEILEKIAHLLPPDVERLIEKEAM-------------------EINQALLGNRRAYADLFANLMEAELQRELSYRRRWQD 174 (473)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHH-------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333322 223322 334444444454443 555566677777
Q ss_pred hHHHHhhcChhh----hHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 535 HSALMSILDRRP----IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 535 ~~~~l~~L~~~~----l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
....++.|..+. ....|-+... .++ ......+..+...-..+...|..++..+...
T Consensus 175 ~~~~Wr~l~~~~~i~~f~~~~~s~~~----~~P--~~~~~~~e~~~~~Q~~l~~~r~~~L~~l~~l 234 (473)
T PF14643_consen 175 RVDDWRALRHERAIQEFREFMASEEF----QNP--PERKQLLEQMRKEQVDLHEKRLELLQSLCDL 234 (473)
T ss_pred HHHHHHHHhHHHHHHHHHHHhCcccc----CCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777777777322 2334433321 111 2344556667777777888999999888764
No 116
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.10 E-value=2e+02 Score=33.93 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002807 451 ALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIER 530 (878)
Q Consensus 451 ~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~ 530 (878)
.+++..+.+.++.....+.++++.+.=+.=.+-..++|..+|+ ..+++..+-..|++++..+-..+..=+++=.+++.
T Consensus 606 ~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~--~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~ 683 (741)
T KOG4460|consen 606 YCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHS--ELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTM 683 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc--cCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455555566666666667777776666666677889999997 34778888889999997766655555555555666
Q ss_pred HHHHhHHHHhhcChhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 531 SVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLK 594 (878)
Q Consensus 531 k~~~~~~~l~~L~~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk 594 (878)
+++..+..+ +...+++|+..-. +. +.+.+.+...|.+|..+..+--+-+..++
T Consensus 684 ~~~KQ~~H~-----~~v~~al~K~~Y~---l~---~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~ 736 (741)
T KOG4460|consen 684 KKDKQQQHM-----EKVLSALPKPTYI---LS---AYQRKCIQSILKELGEHIREMVKQVKDIR 736 (741)
T ss_pred HHHHHHHHH-----HHHHhhccCCccc---cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665543333 3444556655321 11 34455666666666666554444444443
No 117
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=72.27 E-value=2.2e+02 Score=34.03 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC---CCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002807 457 QQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT---RWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVR 533 (878)
Q Consensus 457 ~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~---~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~ 533 (878)
.+|.+|..+....++.+..+ +. ++..|...++. .|.+. ++.+..-|-.++...+..|+++...-..+...+.
T Consensus 42 ~El~~LNDRLA~YIekVR~L-Ea---qN~~L~~di~~lr~~~~~~-ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~ 116 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFL-EA---QNRKLEHDINLLRGVVGRE-TSGIKAKYEAELATARKLLDETARERAKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHhhccCC-CcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666665543 22 22223222221 34443 3455666788888888888888776666666655
Q ss_pred HhHHHHhhc
Q 002807 534 DHSALMSIL 542 (878)
Q Consensus 534 ~~~~~l~~L 542 (878)
...+-++.|
T Consensus 117 kl~~e~~el 125 (546)
T KOG0977|consen 117 KLREELKEL 125 (546)
T ss_pred HhHHHHHHH
Confidence 555544433
No 118
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=71.05 E-value=1.3e+02 Score=31.09 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 685 NINEGLKFYVTLQDAITNIKQQCSDF 710 (878)
Q Consensus 685 nl~eG~~FY~~L~~~l~~l~~~v~df 710 (878)
+...-.+||+++++.-+-+..-.+.|
T Consensus 103 d~~~lv~~ck~Fl~~~s~f~~l~~~~ 128 (205)
T PF12238_consen 103 DYNGLVKFCKDFLDSESPFMKLYKAF 128 (205)
T ss_pred cHHHHHHHHHHHhccccHHHHHHHHH
Confidence 44555567777666655444444433
No 119
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=70.54 E-value=3.3e+02 Score=35.41 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=5.7
Q ss_pred HHHHHHHHh
Q 002807 233 YYEEALGAL 241 (878)
Q Consensus 233 ~Y~~a~~~l 241 (878)
-|+.|+++-
T Consensus 218 DFGsClkm~ 226 (1317)
T KOG0612|consen 218 DFGSCLKMD 226 (1317)
T ss_pred cchhHHhcC
Confidence 466777665
No 120
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.44 E-value=2.6e+02 Score=34.07 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002807 624 YDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNI 703 (878)
Q Consensus 624 f~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l 703 (878)
|..-+-.|-.|+.+|.+=|..|-.- .....++-..+-.+|...|....|+.=.=.+--..+......|..|
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~D---------Tr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~l 559 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSD---------TRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASL 559 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4444455556666665544444322 1223456666677788888776665544444444677778888889
Q ss_pred HHHHHHHHHhh------HHHHHHHHHHHHH
Q 002807 704 KQQCSDFVMTR------NIQCREMIEDVQR 727 (878)
Q Consensus 704 ~~~v~df~~~R------~~E~~~L~~~l~~ 727 (878)
+..|.+.+..= ..|.++|+.+|+.
T Consensus 560 h~~c~~Li~~v~~tG~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 560 HENCSQLIETVEETGTISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99998887542 2356677777664
No 121
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=70.05 E-value=3.6 Score=51.11 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 002807 825 QPLPPSHEY 833 (878)
Q Consensus 825 ~~~~~~~~~ 833 (878)
|||||+|++
T Consensus 24 pppPppPg~ 32 (2365)
T COG5178 24 PPPPPPPGV 32 (2365)
T ss_pred CCCccCCCc
Confidence 333333444
No 122
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=69.82 E-value=40 Score=43.07 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=18.8
Q ss_pred hhhhhccCChHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 002807 370 EKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGS 407 (878)
Q Consensus 370 ~dlF~~LvP~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~ 407 (878)
.++|.+.+|-.|.+.+ .|++..++....+++...+
T Consensus 1112 at~~~g~~pr~~~~kl---ee~Rkrql~erl~ri~~~~ 1146 (1958)
T KOG0391|consen 1112 ATLAVGEPPRAIGGKL---EEERKRQLKERLDRIYLVN 1146 (1958)
T ss_pred hhhccCCCccccccch---hhHHHHHHHHHHHHHhhcc
Confidence 4688888887755543 3334444444444444333
No 123
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=69.66 E-value=1.2e+02 Score=30.13 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhHHHHhhcChhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 524 SDARIERSVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 524 sD~~v~~k~~~~~~~l~~L~~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
-....+.++-+...+|...+..+|..+.-... ..--.|-.+-++-..|+..|+.|...|+..
T Consensus 56 ~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~-----------~lQ~~L~~~re~E~qLr~rRD~LErrl~~l 117 (159)
T PF05384_consen 56 RERQARQRLAEVSRNFDRYSEEDIKEAYEEAH-----------ELQVRLAMLREREKQLRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHHHHHhhhcccCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666667777666666665543321 222334445566778888888888888775
No 124
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=68.53 E-value=8.9 Score=50.74 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHH
Q 002807 125 HLEKAAVLFNLG 136 (878)
Q Consensus 125 ~fEka~VLfNia 136 (878)
.||...||.+..
T Consensus 1210 ~f~v~~~l~d~~ 1221 (2039)
T PRK15319 1210 SFNVAATLTDVD 1221 (2039)
T ss_pred ceEEEeeeeccc
Confidence 555555555544
No 125
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=68.45 E-value=2.6e+02 Score=33.40 Aligned_cols=43 Identities=2% Similarity=0.095 Sum_probs=21.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002807 679 YREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREM 721 (878)
Q Consensus 679 y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L 721 (878)
..+|...+.+-.++|...++.-..-..+..+=|.+--.|...|
T Consensus 326 I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 326 IEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666555443333333333333333444444
No 126
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=68.36 E-value=2.5e+02 Score=33.18 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002807 626 HICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDY-RASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIK 704 (878)
Q Consensus 626 ~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~-~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~ 704 (878)
.+...+.........|..+|...... +...+. .....++=..|...-..|.+|.+++.++..=|+.|.+.+..+.
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~~s----Y~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~ 388 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVKES----YRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIE 388 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH----hccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33444444444444454555444333 232221 1222233456777778888999999999999999998888877
Q ss_pred HHHHH
Q 002807 705 QQCSD 709 (878)
Q Consensus 705 ~~v~d 709 (878)
..+.+
T Consensus 389 ~~l~~ 393 (570)
T COG4477 389 KALTD 393 (570)
T ss_pred HHHHH
Confidence 76654
No 127
>PRK11637 AmiB activator; Provisional
Probab=67.96 E-value=2.4e+02 Score=32.75 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhccCC
Q 002807 584 AQRAGLEDMLKEMKRKDD 601 (878)
Q Consensus 584 ~qR~~l~~~lk~~~~~dd 601 (878)
..++.+-..++....+.+
T Consensus 121 ~~~~~l~~rlra~Y~~g~ 138 (428)
T PRK11637 121 AQERLLAAQLDAAFRQGE 138 (428)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344445555555555444
No 128
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.09 E-value=43 Score=40.32 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=59.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002807 622 SKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFN----LEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQ 697 (878)
Q Consensus 622 ~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~----~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~ 697 (878)
.+|...++.+..-++.+..+|.++...++.+....+ .......-..++++|..-=.++.|+.++|.+|+.+++.|.
T Consensus 91 ~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~kl~elae~I~k~L~yF~~le 170 (733)
T KOG2604|consen 91 PKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSKLSELAEGIRKKLHYFAELE 170 (733)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 366666677777777777778777777777665432 2233445556677787778889999999999999999988
Q ss_pred HHHHHH
Q 002807 698 DAITNI 703 (878)
Q Consensus 698 ~~l~~l 703 (878)
+.-.+|
T Consensus 171 ~l~~~l 176 (733)
T KOG2604|consen 171 ELNRRL 176 (733)
T ss_pred HHHHhh
Confidence 773333
No 129
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.78 E-value=35 Score=29.61 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=43.7
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKEN 333 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kdN 333 (878)
.|+.....|..+...++|.+||.++..|.+.|..+.+.-+. ... -+.+...|..-+++++.--
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d--~~~---k~~~r~ki~eY~~RAE~Lk 67 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKD--EAK---KKNLRQKISEYMDRAEAIK 67 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCC--HHH---HHHHHHHHHHHHHHHHHHH
Confidence 45666778888888999999999999999999988765432 111 2234455555566665433
No 130
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.76 E-value=2.8e+02 Score=33.17 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=9.5
Q ss_pred hhhhhccCChHHHHHH
Q 002807 370 EKMFASLVPDSSAKAL 385 (878)
Q Consensus 370 ~dlF~~LvP~~V~ea~ 385 (878)
..+|..|.-+.+...+
T Consensus 153 ~~il~~l~~~~~~~~~ 168 (562)
T PHA02562 153 RKLVEDLLDISVLSEM 168 (562)
T ss_pred HHHHHHHhCCHHHHHH
Confidence 3566666666655543
No 131
>PHA03369 capsid maturational protease; Provisional
Probab=66.70 E-value=96 Score=36.86 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=8.8
Q ss_pred HHHhHHHHHHHHHHH
Q 002807 682 IKENINEGLKFYVTL 696 (878)
Q Consensus 682 l~~nl~eG~~FY~~L 696 (878)
+...|.+|.+-|..+
T Consensus 324 ~~~yl~~G~~~F~~I 338 (663)
T PHA03369 324 IEQYLIEGRKLFSTI 338 (663)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345567776666554
No 132
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=66.44 E-value=4.3e+02 Score=35.18 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 570 GALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 570 ~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
..+..+.++..++..+-+.+...|+..
T Consensus 366 ~~~~~Lt~~~~di~~ky~~~~~~l~~~ 392 (1201)
T PF12128_consen 366 EQLDLLTSKHQDIESKYNKLKQKLEEA 392 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444
No 133
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=64.70 E-value=73 Score=37.09 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=3.2
Q ss_pred Hhcccccc
Q 002807 727 RQMAGLNF 734 (878)
Q Consensus 727 ~~~~~~~~ 734 (878)
.+..++..
T Consensus 508 aq~~~~Qr 515 (694)
T KOG4264|consen 508 AQSEGYQR 515 (694)
T ss_pred hhhhhhhc
Confidence 33344443
No 134
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=63.19 E-value=15 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=24.3
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
|.+++++|..+...+++.+|+..++.|..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 457788899999999999999999888654
No 135
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=63.10 E-value=2.6e+02 Score=33.36 Aligned_cols=147 Identities=17% Similarity=0.072 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHH-
Q 002807 125 HLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLA- 203 (878)
Q Consensus 125 ~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLA- 203 (878)
+.=.+.+|.|+|.+|.. ....++|-.++.+|-.|++.+... ..+++-..|..+...
T Consensus 279 h~~va~~l~nLa~ly~~---------~GKf~EA~~~~e~Al~I~~~~~~~--------------~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYK---------QGKFAEAEEYCERALEIYEKLLGA--------------SHPEVAAQLSELAAIL 335 (508)
T ss_pred CHHHHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHHHHHhhcc--------------ChHHHHHHHHHHHHHH
Confidence 45567888888888832 234788999999999999883211 112222222222111
Q ss_pred -----HHHHHH-HHHHHh---c--CCCccHHHHHHHHHHHHHH------HHHHHhhcCCCCCcchHhHHHHHHHHHHHHH
Q 002807 204 -----QAQECV-FENTIA---K--GSTPGVCAKISRQVGLYYE------EALGALTVAPLKDHFDKAWVTHVQLKAALFY 266 (878)
Q Consensus 204 -----QAQEc~-~~Ka~~---~--~~k~~liAKLA~qv~~~Y~------~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~ 266 (878)
-=|.|. +++++. + +-.+..++|+-...+.+|- +|.++++.+.. -..-...|..++.
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~-------~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ-------ILRELLGKKDYGV 408 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-------HHHhcccCcChhh
Confidence 111111 223322 1 2234356666665555543 34433332210 0000123457777
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHh
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISALTEAK 301 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~ 301 (878)
++...++|.++.+.++++++-.-+..|..+++.+.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 88889999999889999999999999999985554
No 136
>PRK11637 AmiB activator; Provisional
Probab=62.76 E-value=3e+02 Score=31.99 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002807 661 YRASREKCYKQIQAAIAKYREIKENI 686 (878)
Q Consensus 661 ~~~~re~~l~~L~~A~~~y~el~~nl 686 (878)
...+++..+..|..-...+......+
T Consensus 213 ~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 213 ARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444333
No 137
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=62.74 E-value=56 Score=27.88 Aligned_cols=63 Identities=24% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 264 LFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVK 331 (878)
Q Consensus 264 ~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~k 331 (878)
+-.|+.....|....+.+++.+|+.++..|.+.|..+.+.... .. ....+...+...++++++
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~--~~---~~~~~~~k~~eyl~raE~ 67 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESD--SK---RREAVKAKAAEYLDRAEE 67 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC--HH---HHHHHHHHHHHHHHHHHH
Confidence 4456666778888888899999999999999999988765432 11 122344455555555543
No 138
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.06 E-value=3e+02 Score=31.90 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhh
Q 002807 151 VEGRRLASHSFIAAAGAFAYLRDNA 175 (878)
Q Consensus 151 ~~~lK~A~~~fq~AAG~F~~l~~~~ 175 (878)
+-+...+| +-||+.||.++.
T Consensus 102 dk~yqq~c-----~~~I~~yL~eng 121 (622)
T COG5185 102 DKNYQQAC-----QEEIYDYLKENG 121 (622)
T ss_pred cchHHHHH-----HHHHHHHHHHcC
Confidence 44555554 679999999985
No 139
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.99 E-value=1.7e+02 Score=30.68 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHH
Q 002807 664 SREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDA-ITNIKQQCSDFVMTRNIQC 718 (878)
Q Consensus 664 ~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~-l~~l~~~v~df~~~R~~E~ 718 (878)
+|+...+....+.+. .+=+.++.+...||++.+.. +......|-.|+++|=..+
T Consensus 126 kr~~~~Ka~e~~~kR-kQdsa~~~e~a~wy~dyLGleie~~hgevikfiFTnIdpk 180 (246)
T KOG4657|consen 126 KRQALSKAKENAGKR-KQDSADIHEAASWYNDYLGLEIEAGHGEVIKFIFTNIDPK 180 (246)
T ss_pred HHHHHHHHHHHHHHH-HhhhhccHHHHHHHHHhcCceeeeccCceEEEEEeccCCC
Confidence 344444555555555 55567889999999987654 4555555556666554433
No 140
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.77 E-value=72 Score=27.51 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 264 LFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVK 331 (878)
Q Consensus 264 ~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~k 331 (878)
..+|+.....|......++|.+|+-++..|.+.+..+.+..+. ... -+.+...|..-+++||+
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~--~~~---k~~ir~K~~eYl~RAE~ 65 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSS--PER---REAVKRKIAEYLKRAEE 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC--HHH---HHHHHHHHHHHHHHHHH
Confidence 3567788888998888999999999999999999888665432 222 23455677777777765
No 141
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=61.72 E-value=17 Score=25.39 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=24.4
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
|.+++..|......+++.+||..++.|.++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 457888888888899999999999888764
No 142
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=61.29 E-value=1.5e+02 Score=28.06 Aligned_cols=103 Identities=16% Similarity=0.293 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHhhCCCCCCCCchHhHHHHH
Q 002807 431 TLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEAT--EDAQFRSQFGTRWTRPQSSTLTKNLQ 508 (878)
Q Consensus 431 ~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~--eD~~~R~kyG~~W~r~~S~~l~~~l~ 508 (878)
.||+.+......++. +...++.+-.-+..+...|.+++..|++=+. +|...=..-|.-.-...-+.+..++.
T Consensus 3 ~lpp~~q~~l~q~Qq------Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~ 76 (119)
T COG1382 3 QLPPEVQAQLAQLQQ------LQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELE 76 (119)
T ss_pred CCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHH
Confidence 477777777666653 5666666666667778888888888877554 44445556777555556678888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 002807 509 DRLNRFAGNLKQAAESDARIERSVRDHSALM 539 (878)
Q Consensus 509 ~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l 539 (878)
++++.+.--++.=.+.-..+.++|++....|
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877776676777777777765544
No 143
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.95 E-value=26 Score=38.57 Aligned_cols=6 Identities=50% Similarity=1.215 Sum_probs=2.6
Q ss_pred CCCCCC
Q 002807 795 PPPYGN 800 (878)
Q Consensus 795 ~~~~~~ 800 (878)
||-|+.
T Consensus 139 pP~ys~ 144 (365)
T KOG2391|consen 139 PPVYSR 144 (365)
T ss_pred CccccC
Confidence 333554
No 144
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=60.77 E-value=4.4e+02 Score=33.27 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 002807 506 NLQDRLNRFAGNLKQAAESD 525 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD 525 (878)
..+.+++..+..|++|.+-+
T Consensus 112 ~vK~rm~~a~~~L~EA~~w~ 131 (766)
T PF10191_consen 112 SVKSRMEAARETLQEADNWS 131 (766)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 45666666666666666555
No 145
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.51 E-value=74 Score=40.06 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=42.3
Q ss_pred CCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002807 430 MTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQF 487 (878)
Q Consensus 430 ~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~ 487 (878)
.|+|++|++++..+-..+ -..+++++..|.+.+...+....++++.+.+-++.-+++
T Consensus 497 ~Glp~~ii~~A~~~~~~~-~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 497 LGLPENIIEEAKKLIGED-KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred hCcCHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999997664 448899999998888887777777666665544333333
No 146
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.14 E-value=1.7e+02 Score=34.17 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 002807 667 KCYKQIQAAIAKYREIKENINEGLK 691 (878)
Q Consensus 667 ~~l~~L~~A~~~y~el~~nl~eG~~ 691 (878)
+++.+-.+++..+.+|..+.-|+++
T Consensus 469 e~lt~~~e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 469 EHLTQEQEALTKLVNILKGDQEDIK 493 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444555555555555555555
No 147
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.06 E-value=71 Score=34.19 Aligned_cols=18 Identities=28% Similarity=0.195 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002807 567 AIVGALKQSLRQLETLGA 584 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~ 584 (878)
+...-|..||+.|+.|++
T Consensus 49 e~rk~lsgLm~~lealkk 66 (338)
T KOG0917|consen 49 ECRKFLSGLMDQLEALKK 66 (338)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556667777777655
No 148
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.85 E-value=3.8e+02 Score=32.34 Aligned_cols=45 Identities=9% Similarity=0.327 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHhccccccCC
Q 002807 692 FYVTLQDAITNIKQQCSD----FVMTRNIQCREMIEDVQRQMAGLNFQD 736 (878)
Q Consensus 692 FY~~L~~~l~~l~~~v~d----f~~~R~~E~~~L~~~l~~~~~~~~~~~ 736 (878)
.-..|...+.++..++.+ .-..|+.-...|...+...+..+.+.+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344444445544444443 335577777778888888888877765
No 149
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=59.61 E-value=83 Score=26.91 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=43.4
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVK 331 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~k 331 (878)
.|+.....|......++|.+|+.++..|.+.+..+.+.... .. ....+...+..-+++++.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~--~~---~k~~~~~k~~eyl~RaE~ 65 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKN--PK---SKESIRAKCTEYLDRAEK 65 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC--HH---HHHHHHHHHHHHHHHHHH
Confidence 56677778888888999999999999999999887655332 11 223345556666666654
No 150
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=59.19 E-value=1.9e+02 Score=34.12 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002807 695 TLQDAITNIKQQCSDF 710 (878)
Q Consensus 695 ~L~~~l~~l~~~v~df 710 (878)
.+.+.|.-.+.++.+.
T Consensus 151 ~mi~~i~~~~~Eir~L 166 (582)
T PF03276_consen 151 QMIDDIGMQQREIRDL 166 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 151
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.53 E-value=2.5e+02 Score=29.77 Aligned_cols=66 Identities=11% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhcccc
Q 002807 667 KCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVM---TRNIQCREMIEDVQRQMAGL 732 (878)
Q Consensus 667 ~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~---~R~~E~~~L~~~l~~~~~~~ 732 (878)
.+.++...--+....|...|.+...-+......+.+|...+.+... .-+.....+...|.+-|+.|
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444556777888888888888888888877777655432 23333344445555444443
No 152
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=58.49 E-value=3.4e+02 Score=31.30 Aligned_cols=39 Identities=15% Similarity=0.411 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 613 YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEE 651 (878)
Q Consensus 613 ~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~ 651 (878)
++++..+-|..|-.+...|..-+..+.+++...-.....
T Consensus 53 yd~~i~~~l~~~~~lS~kIggdv~~~~~~v~~~F~s~R~ 91 (480)
T KOG2675|consen 53 YDDLISEPLAEYLKLSKKIGGDVADVAEMVKSAFASQRA 91 (480)
T ss_pred HHHHHHhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 466666667777666666666666665555544444433
No 153
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=58.44 E-value=14 Score=45.21 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKR 598 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~ 598 (878)
...+..|+.++++|.+.+.+|...++.++..+.
T Consensus 206 ~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~ 238 (619)
T PF03999_consen 206 DENLEKLQELLQELEEEKEEREEKLQELREKIE 238 (619)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999988887654
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=57.36 E-value=2.4e+02 Score=34.42 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=4.0
Q ss_pred HHHHHHHhc
Q 002807 721 MIEDVQRQM 729 (878)
Q Consensus 721 L~~~l~~~~ 729 (878)
|-..+-+.|
T Consensus 74 Ls~~~Gr~i 82 (617)
T PRK14086 74 LSRELGRPI 82 (617)
T ss_pred HHHHhCCCe
Confidence 334455443
No 155
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=56.93 E-value=5.3e+02 Score=33.01 Aligned_cols=53 Identities=9% Similarity=0.192 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHH
Q 002807 669 YKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQC---SDFVMTRNIQCREM 721 (878)
Q Consensus 669 l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v---~df~~~R~~E~~~L 721 (878)
......++..+.-....+.+-+.-|.++......++.++ ..-++.|..|...+
T Consensus 452 ~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl 507 (1195)
T KOG4643|consen 452 TSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRL 507 (1195)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666777766666666553 33444444444333
No 156
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.92 E-value=5.4e+02 Score=32.84 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=57.0
Q ss_pred HHHHHHHhcCChhHHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHH---------HhhCC-CCCCCCc
Q 002807 438 EEVEAVQISGGPAALEA----ELQQLRD---LRRVNQELLVQTEELLQKEATEDAQFR---------SQFGT-RWTRPQS 500 (878)
Q Consensus 438 ~~~~~i~~~gg~~~l~~----~l~~l~~---l~~~~~~~L~e~~~~L~~E~~eD~~~R---------~kyG~-~W~r~~S 500 (878)
++.+.++.-+|....+. ++.-|.+ .+..+...|..+++.|..=+.|-+.++ ..+-- .+.|
T Consensus 154 eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdr--- 230 (1200)
T KOG0964|consen 154 ERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDR--- 230 (1200)
T ss_pred HHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhh---
Confidence 34444555566655443 3333333 345566677777776665333333332 21111 1211
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC
Q 002807 501 STLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD 543 (878)
Q Consensus 501 ~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~ 543 (878)
+ ..+.+.++.++.+.-..|.+.+.++...+.+..+.++-|.
T Consensus 231 -E-l~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~ 271 (1200)
T KOG0964|consen 231 -E-LNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLK 271 (1200)
T ss_pred -H-HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence 2 3456777777777777788888888888877777666555
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=55.75 E-value=1.1e+02 Score=33.08 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhh
Q 002807 124 IHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDN 174 (878)
Q Consensus 124 l~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~ 174 (878)
-.||.|.-+|+-|+....++.. .+.|...|.+||-++.-+.+.
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~--------~~~A~~ay~kAa~~~~~~~~~ 71 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKD--------WEKAAEAYEKAADCYEKLGDK 71 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHTT-H
T ss_pred CCHHHHHHHHHHHHHHHHHHhc--------cchhHHHHHHHHHHHHHcCCH
Confidence 3799999999999998877653 688999999999998775543
No 158
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=55.46 E-value=2e+02 Score=29.59 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 002807 663 ASREKCYKQIQAA 675 (878)
Q Consensus 663 ~~re~~l~~L~~A 675 (878)
..|.+.+++|...
T Consensus 84 EkrD~~IQqLqk~ 96 (272)
T KOG4552|consen 84 EKRDEVIQQLQKN 96 (272)
T ss_pred HHhHHHHHHHHHH
Confidence 3466666665543
No 159
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.15 E-value=6.1e+02 Score=33.21 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002807 694 VTLQDAITNIKQQCSDFVMTRNIQCREM 721 (878)
Q Consensus 694 ~~L~~~l~~l~~~v~df~~~R~~E~~~L 721 (878)
+.+.+.+.+|+...+.+..+|..-.++|
T Consensus 752 ~~~~~~vl~Lq~~LEqe~~~r~~~~~eL 779 (1317)
T KOG0612|consen 752 DQLITEVLKLQSMLEQEISKRLSLQREL 779 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 4566666777777777777766555444
No 160
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.72 E-value=1.8e+02 Score=34.55 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--CccHHH--HHHHHHHHHHHHHHHHhhcCCC-CCcchHhHHHHHHH---HHHHHH
Q 002807 195 GMLERLMLAQAQECVFENTIAKGS--TPGVCA--KISRQVGLYYEEALGALTVAPL-KDHFDKAWVTHVQL---KAALFY 266 (878)
Q Consensus 195 ~~L~~lmLAQAQEc~~~Ka~~~~~--k~~liA--KLA~qv~~~Y~~a~~~l~~~~~-~~~~~~~w~~~~~~---K~~~f~ 266 (878)
+++...+|+--|+.|++-|...+. .+.|-+ -+-.-.+.-|+.|.++++.+-. ...=-.-|.++=-. -...-.
T Consensus 403 s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~E 482 (579)
T KOG1125|consen 403 SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEE 482 (579)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHH
Confidence 344566788889999999888773 333332 3445666777888877765522 22223457654222 124556
Q ss_pred HHHHHHHhHhhhh
Q 002807 267 AEACYRYSLELHE 279 (878)
Q Consensus 267 A~A~y~~a~~~~e 279 (878)
||.-|+.|+.+.-
T Consensus 483 AIsAY~rALqLqP 495 (579)
T KOG1125|consen 483 AISAYNRALQLQP 495 (579)
T ss_pred HHHHHHHHHhcCC
Confidence 7777777776543
No 161
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=54.65 E-value=5e+02 Score=32.01 Aligned_cols=119 Identities=14% Similarity=0.201 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhCCCCC-CCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcCh
Q 002807 466 NQELLVQTEELLQKEATEDAQFRSQFGTRWT-RPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDR 544 (878)
Q Consensus 466 ~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~-r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~~ 544 (878)
..+.+.+|.+.|+ +..+++.|-.+||...+ ..|-..+-.+=-+..+.++....+|.+.-..++.++-...+.+..=.
T Consensus 891 L~dRveE~~E~L~-~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~- 968 (1480)
T COG3096 891 LADRVEEIRERLD-EAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRA- 968 (1480)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 3455667777776 46788999999996322 12211111111234455666777777777666655433333322111
Q ss_pred hhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 545 RPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 545 ~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
.+--+.... +-....+.-.+|| .+|+.+..+|..--++|+++
T Consensus 969 -----HF~Y~ds~~--~l~e~sdLnekLr---~rL~q~eaeR~~~reqlrQ~ 1010 (1480)
T COG3096 969 -----HFSYSDSAE--MLSENSDLNEKLR---QRLEQAEAERTRAREQLRQH 1010 (1480)
T ss_pred -----ccccchhhh--hhcccchhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 111010000 0001112223343 45667778888888888875
No 162
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.54 E-value=1.1e+02 Score=26.01 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=43.7
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKE 332 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kd 332 (878)
.|+.....|....+.+++-+|+-++..|.+.|..+.+.... . ..-..+...|...+++++.-
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~--~---~~k~~l~~k~~~yl~RaE~L 66 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKE--P---KLRKLLRKKVKEYLDRAEFL 66 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC--H---HHHHHHHHHHHHHHHHHHHH
Confidence 45566667888888899999999999999999888755432 1 12344556666666666553
No 163
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=52.39 E-value=56 Score=30.04 Aligned_cols=54 Identities=9% Similarity=0.245 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Q 002807 676 IAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAG 731 (878)
Q Consensus 676 ~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~~~~ 731 (878)
.+..++|...+..|..+|.+..+.+.. ..++.++..+..++......|+..+..
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~--~~lk~~f~~~~~~~~~~~~~L~~~i~~ 56 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAEKAED--PELKSLFQEFAQERQQHAEELQAEIQE 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--S--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888999999988888873 333344444455555555555544433
No 164
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.18 E-value=3.4e+02 Score=29.32 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 690 LKFYV--TLQDAITNIKQQCSDFVMTRNIQC 718 (878)
Q Consensus 690 ~~FY~--~L~~~l~~l~~~v~df~~~R~~E~ 718 (878)
-.||. -|.++|..+-.--++|+..|+=.+
T Consensus 110 kaFYtA~~~~dILs~FGel~e~~l~~rKYAk 140 (338)
T KOG0917|consen 110 KAFYTASLLIDILSVFGELTEENLKHRKYAK 140 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHhhhHHhH
Confidence 35665 355666666655567777776543
No 165
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=51.88 E-value=4e+02 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002807 568 IVGALKQSLRQLETLG 583 (878)
Q Consensus 568 ~v~~Lr~ll~~l~~l~ 583 (878)
+-.+++.-+.++.+..
T Consensus 137 ~~~~~~~~~q~lq~~~ 152 (464)
T KOG4637|consen 137 VGKKLREYHQQLQEKS 152 (464)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344555555554443
No 166
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.12 E-value=1.3e+02 Score=37.87 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=40.3
Q ss_pred CCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002807 429 NMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATED 484 (878)
Q Consensus 429 ~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD 484 (878)
..|+|++|++.+..+-... -..+++++..|.+.+...+....+++..+.+-+..-
T Consensus 491 ~~Glp~~ii~~A~~~~~~~-~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~ 545 (771)
T TIGR01069 491 RYGIPHFIIEQAKTFYGEF-KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLK 545 (771)
T ss_pred HhCcCHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999997653 447888888888888777777776666655443333
No 167
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=50.72 E-value=1.8e+02 Score=25.75 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002807 623 KYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFN 657 (878)
Q Consensus 623 kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~ 657 (878)
..+.+...|.+-...|..|+..|...+.+|.....
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677778899999999999998876554
No 168
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=50.63 E-value=4.4e+02 Score=30.22 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 002807 639 EQLLMQIQA 647 (878)
Q Consensus 639 ~~Ll~~I~~ 647 (878)
+..+.+|+.
T Consensus 84 E~~V~~it~ 92 (383)
T PF04100_consen 84 EQMVQEITR 92 (383)
T ss_pred HHHHHHHHH
Confidence 444444443
No 169
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=50.37 E-value=3.9e+02 Score=31.99 Aligned_cols=138 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCC---------ChHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002807 568 IVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAG---------SYEDLFRKEISKYDHICEEIAQNIEAQ 638 (878)
Q Consensus 568 ~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~---------~~e~lf~~eL~kf~~l~~~I~~~~~~Q 638 (878)
...+|.+.-.-+.++.++=..|+..+|+......--.+-+.... +.|-.....|+.|..+...| .
T Consensus 25 he~el~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~v------e 98 (812)
T KOG1451|consen 25 HEVELDRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQV------E 98 (812)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHH------H
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 639 EQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQC 718 (878)
Q Consensus 639 ~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~ 718 (878)
++-+.-+-.+.+.+. ....+=|.+.|.-+.++-++|. .||.+||..|...|+---.+-.+| +.
T Consensus 99 ~er~~~v~~Ase~li-----~PlekFRkEqIG~~KE~KkKyd------Ke~ekfy~~LekHLhLSskkesql------qe 161 (812)
T KOG1451|consen 99 DERMRMVGNASESLI-----EPLEKFRKEQIGTLKEEKKKYD------KESEKFYQTLEKHLHLSSKKESQL------QE 161 (812)
T ss_pred HHHHHHHhhhHHHHH-----hHHHHHHHHHhhhhHHHHhhhh------hhhHHHHHHHHHHhccccchhhHH------HH
Q ss_pred HHHHHHHHHh
Q 002807 719 REMIEDVQRQ 728 (878)
Q Consensus 719 ~~L~~~l~~~ 728 (878)
.++..+.+++
T Consensus 162 AD~Qvd~~r~ 171 (812)
T KOG1451|consen 162 ADAQVDTQRK 171 (812)
T ss_pred HHHHHHHHHH
No 170
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.65 E-value=4.7e+02 Score=30.30 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002807 627 ICEEIAQNIEAQEQLLMQIQAQN 649 (878)
Q Consensus 627 l~~~I~~~~~~Q~~Ll~~I~~~n 649 (878)
.|+.|-+.+..-..+..++.+.-
T Consensus 460 nc~ei~E~i~~tg~~~revrdlE 482 (521)
T KOG1937|consen 460 NCMEILEMIRETGALKREVRDLE 482 (521)
T ss_pred HHHHHHHHHHHcchHHHHHHHHH
Confidence 34444444444444444444443
No 171
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=49.24 E-value=5.3e+02 Score=30.78 Aligned_cols=83 Identities=13% Similarity=0.303 Sum_probs=51.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhch--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002807 616 LFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSA---IFNLE--DYRASREKCYKQIQAAIAKYREIKENINEGL 690 (878)
Q Consensus 616 lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~---~~~~~--~~~~~re~~l~~L~~A~~~y~el~~nl~eG~ 690 (878)
-+.+.+.|... .+.+...+-.++.+.....-++|.. ..+.. ..+.+-...+..|-..|+...+..++|.+++
T Consensus 128 ~lkKqi~k~~q---~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i~~l~~ai 204 (507)
T PF05600_consen 128 ALKKQIAKCQQ---QLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAISDLQEAI 204 (507)
T ss_pred HHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45555655543 3444444455555544444444433 22332 3445555667888888888888889999999
Q ss_pred HHHHHHHHHHH
Q 002807 691 KFYVTLQDAIT 701 (878)
Q Consensus 691 ~FY~~L~~~l~ 701 (878)
.||..+...+.
T Consensus 205 e~Y~~f~~~~~ 215 (507)
T PF05600_consen 205 EYYQAFVEFVH 215 (507)
T ss_pred HHHHHHHHHHH
Confidence 99999877655
No 172
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=49.21 E-value=4.3e+02 Score=29.66 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKE 595 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~ 595 (878)
+.+.....+.+.|+......+.++.+|+.
T Consensus 241 ~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~ 269 (337)
T cd09234 241 EELKKHDQLVNLIEQNLAAQENILKALTE 269 (337)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666654
No 173
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.95 E-value=4.5e+02 Score=29.87 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002807 663 ASREKCY-KQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQ 706 (878)
Q Consensus 663 ~~re~~l-~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~ 706 (878)
..||+.| ++|..-...|+.++..|.+...=|+...+.++.+.+.
T Consensus 258 ~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 258 ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455554 3355555555555555555555555555444444433
No 174
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=48.73 E-value=1.4e+02 Score=25.69 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=46.0
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKEN 333 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kdN 333 (878)
+|+.....|......++|-+|+-.+..|.+.+..+.+..+. .. .-+.+...+...+++|++-=
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~--~~---~k~~lr~k~~eyl~RAE~LK 67 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETD--AQ---RKEALRQKVLQYVSRAEELK 67 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCC--HH---HHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888899999999999999999887655432 22 23345667777777776643
No 175
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.23 E-value=2.5e+02 Score=26.60 Aligned_cols=104 Identities=13% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHhhCCCCCCCCchHhHHHHH
Q 002807 431 TLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEAT--EDAQFRSQFGTRWTRPQSSTLTKNLQ 508 (878)
Q Consensus 431 ~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~--eD~~~R~kyG~~W~r~~S~~l~~~l~ 508 (878)
+||+.|...+..++. +...+..+..-+......+.+++..+++=.. +|...=.-.|...-+.+-+++..++.
T Consensus 4 ~~~~~~q~~~~~~q~------lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~ 77 (121)
T PRK09343 4 NIPPEVQAQLAQLQQ------LQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELK 77 (121)
T ss_pred hhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHH
Confidence 477777777776654 3444444444444445555554444444222 44455555777667778888888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHh
Q 002807 509 DRLNRFAGNLKQAAESDARIERSVRDHSALMS 540 (878)
Q Consensus 509 ~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~ 540 (878)
.+++.+...++.-.+--..+++++.+....|.
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777666666666666666655543
No 176
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.06 E-value=7.1e+02 Score=31.88 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHh
Q 002807 467 QELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAE 523 (878)
Q Consensus 467 ~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~ 523 (878)
...|..+...|..=+..-+.+.+-.|+.. +++++..-.+.+.++..-+.+++.
T Consensus 747 ~~~Le~i~~~l~~~~~~~~~~e~el~sel----~sqLt~ee~e~l~kLn~eI~~l~~ 799 (1200)
T KOG0964|consen 747 GKELEEIKTSLHKLESQSNYFESELGSEL----FSQLTPEELERLSKLNKEINKLSV 799 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHH----HhhcCHHHHHHHHHhhHHHHHHHH
Confidence 33444444444443333333444444411 244455555555555555555443
No 177
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.83 E-value=6.6e+02 Score=31.47 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002807 456 LQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDH 535 (878)
Q Consensus 456 l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~ 535 (878)
.+......+-..+.|.+.++.|++-+.+=++||.++|-.= .....+ ..++|..+...|..|..-=.....+++..
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~--~~~~~~---~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLM--GNNATL---ATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455677888888889988888999999999621 111111 12556666666665554333333344444
Q ss_pred HHHH
Q 002807 536 SALM 539 (878)
Q Consensus 536 ~~~l 539 (878)
+..+
T Consensus 264 ~~~l 267 (754)
T TIGR01005 264 KKAL 267 (754)
T ss_pred HHHH
Confidence 3333
No 178
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.56 E-value=5.8e+02 Score=30.73 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCC
Q 002807 702 NIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQD 736 (878)
Q Consensus 702 ~l~~~v~df~~~R~~E~~~L~~~l~~~~~~~~~~~ 736 (878)
++...|......|+.-...|...+...+..+.+..
T Consensus 357 ~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~ 391 (557)
T COG0497 357 ELLEAAEALSAIRKKAAKELEKEVTAELKALAMEK 391 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445566667788899999999999888888764
No 179
>PRK10807 paraquat-inducible protein B; Provisional
Probab=47.39 E-value=2.5e+02 Score=33.90 Aligned_cols=65 Identities=9% Similarity=0.225 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q 002807 665 REKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDR 737 (878)
Q Consensus 665 re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~~~~~~~~~~ 737 (878)
++..-.++..+......+.+++..|..+|.+|.+.+.+|.+-.. +.+.|...|+++=+.+=|+..
T Consensus 471 ~~~Lp~~L~~TL~~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r--------~lr~l~~~L~~~P~aLi~g~~ 535 (547)
T PRK10807 471 MQQLPADMQKTLRELNRSMQGFQPGSPAYNKMVADMQRLDQVLR--------ELQPVLKTLNEKSNALVFEAK 535 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCchhhhcCCC
Confidence 33444677777777777777777899999999999988887654 556788999988888877743
No 180
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.38 E-value=7.3e+02 Score=31.84 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhH
Q 002807 575 SLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDH 626 (878)
Q Consensus 575 ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~ 626 (878)
+-+.+-.++++++.|+.++...+.. .--..++.......++|..++++|-.
T Consensus 535 Le~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~id 585 (1195)
T KOG4643|consen 535 LEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYID 585 (1195)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344555667788888777665432 11112222222345688888887643
No 181
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.42 E-value=5.2e+02 Score=29.86 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMKRK 599 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ 599 (878)
........+..+++.|.++=+..-+.++..+++
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~ 269 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKE 269 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444446666777766666666666655433
No 182
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=46.03 E-value=5.8e+02 Score=30.33 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=30.6
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHH
Q 002807 445 ISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQ 520 (878)
Q Consensus 445 ~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~ 520 (878)
+...++.++++|..+ ......+++.+..++..|+++++..+. +-.+-..++.++-..+..+.+
T Consensus 102 A~~~i~~ie~~l~~i---E~~i~~il~~l~~Lv~sEekN~~~i~~----------~~ely~elr~~vl~n~~~~Ge 164 (570)
T COG4477 102 AKHEIDDIEQQLTLI---EEDIEQILEDLNELVESEEKNSEEIDH----------VLELYEELRRDVLANRHQYGE 164 (570)
T ss_pred hhhhHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHHHHHHHHHhhhhhhh
Confidence 333444455544433 334556666666666666665554332 113334555555555554443
No 183
>PRK12370 invasion protein regulator; Provisional
Probab=45.05 E-value=2.1e+02 Score=34.35 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=9.4
Q ss_pred hhHHHHH-HHHHHHHH
Q 002807 48 FNLEDDL-ETVKQLRS 62 (878)
Q Consensus 48 ~~~~~dl-~~l~~lR~ 62 (878)
+.+.+|| ..|+++|.
T Consensus 138 dg~~edli~~Ls~~~~ 153 (553)
T PRK12370 138 ESLHYSIVKGLSQYAP 153 (553)
T ss_pred hhhHHHHHHHHhhCCC
Confidence 4455554 77777773
No 184
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=43.98 E-value=7.7e+02 Score=31.15 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 002807 506 NLQDRLNRFAGNLKQAAESDARIERSVRDHSALM 539 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l 539 (878)
....+.+++++.+.+=..-+..+.+|++++..-+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl 454 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL 454 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666777776665433
No 185
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.61 E-value=1e+02 Score=32.77 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
.+.+||+.|....+.+.|-++|..|..|.+++++.
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 56788888888888999999999999998888755
No 186
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=43.49 E-value=7.3e+02 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCC
Q 002807 506 NLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESALPTLA 555 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~ 555 (878)
.+|.+-..+++.|+.+.+--.++.--+ .+.|.-|. .++|.+.+|...
T Consensus 82 ~l~kks~~ir~~lea~~~~w~kl~~~l---~el~~wl~~kd~el~~q~p~gg 130 (966)
T KOG4286|consen 82 ELRKKSLNIRSHLEASSDQWKRLHLSL---QELLVWLQLKDDELSRQAPIGG 130 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHhhhHHHHhcCCCCC
Confidence 688888889999988877655444333 33444455 688888888764
No 187
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=42.58 E-value=5.7e+02 Score=29.22 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=74.6
Q ss_pred HHHHHHhHHHHhhcChhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhh
Q 002807 529 ERSVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMT 608 (878)
Q Consensus 529 ~~k~~~~~~~l~~L~~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~ 608 (878)
-..+.+....+...+.+++.+. |..-. .-........+...+.+-..+..+-+.+...|... + ..|..
T Consensus 95 g~~l~~l~~~l~~~d~d~l~~~-~~~f~-----~Kif~r~~~siqe~~~kYQt~~~~id~I~~~l~k~--k----d~L~~ 162 (386)
T COG3853 95 GKMLEQLMFILKRFDPDELPSD-KKGFL-----TKIFGRSKSSIQEIFSKYQTIGAQIDRIIESLSKG--K----DELTR 162 (386)
T ss_pred HHHHHHHHHHHhhcCCcccccc-cchHH-----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--h----HHHHh
Confidence 3345555555555555555443 22210 00112222334445555555555555555555432 1 12223
Q ss_pred cCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002807 609 SAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINE 688 (878)
Q Consensus 609 ~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~e 688 (878)
.....|.+|+.-.+.|..+...|...-...+.|-.+|...... ... . ++ ..
T Consensus 163 dn~~Le~l~~~n~~~~~~L~~yI~agel~~eel~~~i~~~~~~------ka~--~--------------------~~-q~ 213 (386)
T COG3853 163 DNKMLELLYEKNREYFEHLEKYIAAGELKDEELETEIIPELKT------KAE--S--------------------GN-QM 213 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCC--c--------------------cc-hh
Confidence 3334577888888888888888877766666665544432211 000 0 01 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002807 689 GLKFYVTLQDAITNIKQQCSDFVMTRNIQ 717 (878)
Q Consensus 689 G~~FY~~L~~~l~~l~~~v~df~~~R~~E 717 (878)
...|-+++...++.|.++|.|+..+|-.-
T Consensus 214 ~v~~v~~~~~~~~~L~qRv~Dl~~a~~Va 242 (386)
T COG3853 214 DVQQVNELTLFINRLEQRVYDLLLARMVA 242 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445566666666777777777766543
No 188
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=42.20 E-value=3.2e+02 Score=26.27 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 623 KYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIF 656 (878)
Q Consensus 623 kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~ 656 (878)
.|-..++.|..++..=+..+..|...+..+....
T Consensus 3 ~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~ 36 (151)
T cd00179 3 EFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAP 36 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555566666666666666677777766665443
No 189
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=41.97 E-value=2e+02 Score=36.36 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHcccCCCCC--chhHHHHHHHHHHHHHHHH---hcCCCCCCCCCc-cccceeeecCCCCC--Cc--
Q 002807 49 NLEDDLETVKQLRSDVERVPDPT--PSTRRDLLQNYFKALCLIE---TRFPISPDKDHI-NTVMFLWFDAFKQK--QK-- 118 (878)
Q Consensus 49 ~~~~dl~~l~~lR~~~~~~~~~~--~~~~~~~l~~Yy~~L~~l~---~rfp~~~~~~~i-~~l~F~W~ds~~~~--~~-- 118 (878)
.|.+.+.-|.+.|.+.....+.- ..-+.-....|-..+...+ ++|... ++.++ .-+-=.|++.-.-. +.
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~-~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK-NRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 57788888999997654222211 1112334445555544443 344322 11111 00112566543200 00
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhC---CCCChHhHHHHHHHHHHHHHHHHHHHhh
Q 002807 119 ASQQNIHLEKAAVLFNLGAVYSQIGLSC---DRTTVEGRRLASHSFIAAAGAFAYLRDN 174 (878)
Q Consensus 119 ~~~~sl~fEka~VLfNiaal~s~~A~~~---~r~~~~~lK~A~~~fq~AAG~F~~l~~~ 174 (878)
..-..+.-+--.|+||+|.++.++|.+. .+.|.+.+..|..-+..|--+|.+|+.+
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000111111239999999999999974 5678999999999999999999999987
No 190
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=41.82 E-value=2.2e+02 Score=32.34 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRK 599 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ 599 (878)
+.-+-.++.+++++-++.+-|..+.+-|+..+..
T Consensus 246 ~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~ 279 (498)
T KOG2572|consen 246 DSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRT 279 (498)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677889999999999999999999998754
No 191
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.69 E-value=6.3e+02 Score=29.49 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCC
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWT 496 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~ 496 (878)
.+++..+..+-.+|....+.-++.+..|+.....--+.++.-|+..|.
T Consensus 36 ~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~ 83 (460)
T KOG3771|consen 36 ERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWP 83 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 455666677777888888888888888888888888889999998775
No 192
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.68 E-value=4.8e+02 Score=28.06 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 002807 614 EDLFRKEISKYDHICEEIAQNIE----AQEQLLMQIQAQNEEF 652 (878)
Q Consensus 614 e~lf~~eL~kf~~l~~~I~~~~~----~Q~~Ll~~I~~~n~~f 652 (878)
...-+.|++....+..+|...+. ..+.+.+.|.+...+|
T Consensus 148 ~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~ 190 (264)
T PF06008_consen 148 RQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDY 190 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHH
Confidence 34556666666666666665542 2234444555444444
No 193
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.65 E-value=2e+02 Score=32.06 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHH
Q 002807 623 KYDHICEEIAQN 634 (878)
Q Consensus 623 kf~~l~~~I~~~ 634 (878)
|||-.++.|..|
T Consensus 287 KYDiriQKIG~n 298 (488)
T KOG3895|consen 287 KYDIRIQKIGHN 298 (488)
T ss_pred cceeehhhhhhh
Confidence 555555444444
No 194
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=41.44 E-value=59 Score=33.04 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhh
Q 002807 124 IHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDN 174 (878)
Q Consensus 124 l~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~ 174 (878)
|...+.-.|||+|.+|+.+|.-. .+..+|-.+|.+|..+|+-..+.
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~-----~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLT-----PDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHhc
Confidence 44455678999999999999863 23578999999999999887654
No 195
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=41.30 E-value=74 Score=28.75 Aligned_cols=55 Identities=9% Similarity=0.270 Sum_probs=44.3
Q ss_pred HHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 002807 487 FRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSI 541 (878)
Q Consensus 487 ~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~ 541 (878)
+-...|..+-..+..++...+..+++.+..-+..-...-..+..++++....|..
T Consensus 47 ~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 47 VYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777778889999999999999999988888888888888888776653
No 196
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=41.05 E-value=8.9e+02 Score=31.02 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002807 663 ASREKCYKQIQAAIAKYREIKEN 685 (878)
Q Consensus 663 ~~re~~l~~L~~A~~~y~el~~n 685 (878)
.+....++.|+.|...|.+|..+
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455678888888888888765
No 197
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=40.87 E-value=1.2e+02 Score=34.08 Aligned_cols=94 Identities=13% Similarity=0.224 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHh--cC-CCccHHHHHHHHHHHHHHHHHHHhhcC-------CCCCcch-HhHHHHHHHHH
Q 002807 196 MLERLMLAQAQECV--FENTIA--KG-STPGVCAKISRQVGLYYEEALGALTVA-------PLKDHFD-KAWVTHVQLKA 262 (878)
Q Consensus 196 ~L~~lmLAQAQEc~--~~Ka~~--~~-~k~~liAKLA~qv~~~Y~~a~~~l~~~-------~~~~~~~-~~w~~~~~~K~ 262 (878)
.+.++-|.+-|.|. |++|+. .+ ....+--+++...+.+|...-..=+.. .+...+. ++|.
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~------- 201 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS------- 201 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh-------
Confidence 44555566656543 566654 22 234444566776777766443221111 1111121 4553
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 263 ALFYAEACYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 263 ~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
.-|++++.||+|..+...++.|.|--+.+.|.++
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5688999999999999888888776555554443
No 198
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.76 E-value=3e+02 Score=25.43 Aligned_cols=101 Identities=20% Similarity=0.356 Sum_probs=0.0
Q ss_pred CChHHHHHHHhhHHHHHH--HHHHHHHHHHHhhHHHHHHHHhc-CCchHHHhhh--cCCCCChhHHHHHHHHHhcCChhH
Q 002807 377 VPDSSAKALSRYTEMVDD--VIRTQAEKLQQGSELTRVRLKEM-DLPDSILALE--GNMTLPADLKEEVEAVQISGGPAA 451 (878)
Q Consensus 377 vP~~V~ea~s~Y~e~k~~--lvr~~~~~~~~~~~~l~~~L~~l-~LP~~l~~l~--~~~~lP~~l~~~~~~i~~~gg~~~ 451 (878)
+|..+-+....|..-+.+ .+......++..-.+...++.+| +||+.-..+. |++-|..++-+-...+... +..
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r--~e~ 78 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEK--KET 78 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 452 LEAELQQLRDLRRVNQELLVQTEELLQK 479 (878)
Q Consensus 452 l~~~l~~l~~l~~~~~~~L~e~~~~L~~ 479 (878)
|+..+..+.+-....+..+.++++.|.+
T Consensus 79 ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.41 E-value=4.2e+02 Score=30.67 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhh-HHHH
Q 002807 450 AALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAES-DARI 528 (878)
Q Consensus 450 ~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~s-D~~v 528 (878)
..++..-+.+.+..+.....++++.+.|..|..++..+|..- ..++.+++++++.++.+..+ |.+|
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq-------------~vw~~kl~~~~e~~~~~~~s~d~~I 437 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ-------------DVWRGKLKELEEREKEALGSKDEKI 437 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666678888999999999998888888642 24667777777777766643 3333
Q ss_pred HHHHHHhHHHHhhcC
Q 002807 529 ERSVRDHSALMSILD 543 (878)
Q Consensus 529 ~~k~~~~~~~l~~L~ 543 (878)
...=++.++.+-.|+
T Consensus 438 ~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 438 TDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHhHheehh
Confidence 333233333333444
No 200
>PF15605 Toxin_52: Putative toxin 52
Probab=40.31 E-value=1.1e+02 Score=27.83 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=51.3
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCC-CC-hhHHHHHHHHHhc-CChhHHHHHHHH-H------HHHHHHHH
Q 002807 398 TQAEKLQQGSELTRVRLKEMDLPDSILALEGNMT-LP-ADLKEEVEAVQIS-GGPAALEAELQQ-L------RDLRRVNQ 467 (878)
Q Consensus 398 ~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~-lP-~~l~~~~~~i~~~-gg~~~l~~~l~~-l------~~l~~~~~ 467 (878)
.....+...+..+++.|..+++-+++..+.+..- =| -.-|.++.+++.. .|+..+.+.++. | ...+...+
T Consensus 5 ~q~~~i~k~dn~I~~hltd~D~sgt~Rdl~G~pVpKp~GgywdHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq 84 (103)
T PF15605_consen 5 AQRSAINKIDNIINSHLTDMDFSGTLRDLQGNPVPKPDGGYWDHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQ 84 (103)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 3445566666778888999999999999987432 11 2378888888754 355555555544 1 12334455
Q ss_pred HHHHHHHHHHHH
Q 002807 468 ELLVQTEELLQK 479 (878)
Q Consensus 468 ~~L~e~~~~L~~ 479 (878)
+.|+++...|++
T Consensus 85 ~~l~ea~~~l~k 96 (103)
T PF15605_consen 85 SKLNEANNYLDK 96 (103)
T ss_pred HHHHHHHHHHHH
Confidence 566666666555
No 201
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.10 E-value=1.1e+02 Score=26.15 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 002807 435 DLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLV 471 (878)
Q Consensus 435 ~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~ 471 (878)
+|..++..+....| +.=...+..+...-..+.+.|+
T Consensus 7 ~i~~~l~~~~~~~~-~~r~~~i~~~e~~l~ea~~~l~ 42 (79)
T PF05008_consen 7 EIKSKLERIKNLSG-EQRKSLIREIERDLDEAEELLK 42 (79)
T ss_dssp HHHHHHHHGGGS-C-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555 3333344443333333333333
No 202
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.92 E-value=8.5e+02 Score=30.51 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=35.7
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHH
Q 002807 149 TTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQ--AQECVFE 211 (878)
Q Consensus 149 ~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQ--AQEc~~~ 211 (878)
...-+.+.+|...-...++..-|...+ +.+ ..+.|+-.+++.+..++..+. ||.-|..
T Consensus 298 ~Nt~~~~~q~qk~l~ss~ll~~Lc~il-~~~----~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 298 GNTSSITHQNQKALVSSHLLDVLCTIL-MHP----GVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred CCcHHHHHHHHHHHHHcchHHHHHHHH-cCC----CCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 345678888866666667777777663 221 145677777777777666543 4555543
No 203
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.76 E-value=4.4e+02 Score=27.12 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002807 682 IKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDV 725 (878)
Q Consensus 682 l~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l 725 (878)
+...+.++.+ .+......+...+..|-..|..+...+...+
T Consensus 139 l~~ev~~a~~---~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~ 179 (200)
T cd07624 139 LLKEVEKLQD---KLECANADLKADLERWKQNKRQDLKKILLDM 179 (200)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554 4444455667888888888888877776543
No 204
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.61 E-value=6.7e+02 Score=29.16 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 002807 673 QAAIAKYREIKENINEGLK 691 (878)
Q Consensus 673 ~~A~~~y~el~~nl~eG~~ 691 (878)
..||+.+..|..|+.|-+.
T Consensus 448 R~aykllt~iH~nc~ei~E 466 (521)
T KOG1937|consen 448 RLAYKLLTRIHLNCMEILE 466 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655443
No 205
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=39.29 E-value=5.5e+02 Score=28.11 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002807 566 DAIVGALKQSLRQLETLGAQR 586 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR 586 (878)
+.+..+|..++.++++|-+.|
T Consensus 246 d~vEqRL~s~lgK~~~IaEk~ 266 (371)
T KOG3958|consen 246 DQVEQRLQSVLGKVNEIAEKH 266 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345567777777777776433
No 206
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=39.19 E-value=4.4e+02 Score=32.48 Aligned_cols=12 Identities=42% Similarity=0.492 Sum_probs=6.1
Q ss_pred ccchhHHHHHHH
Q 002807 121 QQNIHLEKAAVL 132 (878)
Q Consensus 121 ~~sl~fEka~VL 132 (878)
.+++..||.-|.
T Consensus 188 isNfLLEKsRVV 199 (1106)
T KOG0162|consen 188 ISNFLLEKSRVV 199 (1106)
T ss_pred hhHHHHhhhhhh
Confidence 345555555443
No 207
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=39.16 E-value=5.9e+02 Score=28.45 Aligned_cols=80 Identities=9% Similarity=0.116 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhc-CCC----hHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTS-AGS----YEDLFRKEISKYDHICEEIAQNIEAQEQ 640 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~-~~~----~e~lf~~eL~kf~~l~~~I~~~~~~Q~~ 640 (878)
.+.+..+..+.+.|+......+.++.+|+..- +++...--.. ... +-+-+.....+|..+...|.+.......
T Consensus 246 ~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~--~~f~~~~~~~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~d 323 (342)
T cd08915 246 EEHLKKFDKDLTYVEKTKKKQIELIKEIDAAN--QEFSQVKNSNDSLDPREEALQDLEASYKKYLELKENLNEGSKFYND 323 (342)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45567777888899999999999999998752 3332211001 111 1223455556777778888888888877
Q ss_pred HHHHHHH
Q 002807 641 LLMQIQA 647 (878)
Q Consensus 641 Ll~~I~~ 647 (878)
|...+..
T Consensus 324 L~~~~~~ 330 (342)
T cd08915 324 LIEKVNR 330 (342)
T ss_pred HHHHHHH
Confidence 7765544
No 208
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=39.07 E-value=2.3e+02 Score=28.00 Aligned_cols=58 Identities=10% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCchHhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhHHHHhhcC---hhhhHhhCCCCC
Q 002807 498 PQSSTLTKNLQDRLNRFAGNLKQAAE-SDARIERSVRDHSALMSILD---RRPIESALPTLA 555 (878)
Q Consensus 498 ~~S~~l~~~l~~~l~k~~~~L~~A~~-sD~~v~~k~~~~~~~l~~L~---~~~l~~~lP~~~ 555 (878)
+.|.....++......+......+.. +...+.....+....+..|+ +++|++.+|...
T Consensus 76 peak~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i~ 137 (154)
T PF05823_consen 76 PEAKAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNFPIIA 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-TT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHCccch
Confidence 44445555565554444443333332 23345666677778888898 799999999875
No 209
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=38.88 E-value=2.3e+02 Score=33.99 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=65.7
Q ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHH-----HH----HHHHHHHHHHHHHHH
Q 002807 615 DLFRKEIS-KYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIF-NLEDYRASRE-----KC----YKQIQAAIAKYREIK 683 (878)
Q Consensus 615 ~lf~~eL~-kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~-~~~~~~~~re-----~~----l~~L~~A~~~y~el~ 683 (878)
+|..++-. .|+.++..+. |-.-|+.-+..|...|..|...- +++. ....+ .+ +|+|..=--....|.
T Consensus 334 Div~~ha~~~f~vYv~Y~t-NQ~YQeRT~qrL~~~n~~F~e~l~rLE~-~p~C~~Lpl~SFLiLPmQRITRL~LLl~nIl 411 (695)
T KOG3523|consen 334 DIVEDHAAKHFSVYVKYCT-NQVYQERTLQRLLTENPAFREVLERLES-SPKCQGLPLRSFLILPMQRITRLPLLLDNIL 411 (695)
T ss_pred HHHHHhcccccceeehhcc-chHHHHHHHHHHHhcChHHHHHHHHHhc-CccccCCCchhhhhchHHHHHHHHHHHHHHH
Confidence 45555543 4566666664 44568888888988888887642 2210 01111 11 244443333445667
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhc
Q 002807 684 ENINEGLKFYVTLQDAITNIKQQCSDFV--MTRNIQCREMIEDVQRQM 729 (878)
Q Consensus 684 ~nl~eG~~FY~~L~~~l~~l~~~v~df~--~~R~~E~~~L~~~l~~~~ 729 (878)
....+|..=|..-...++.+.+-|.+ | .+|++|+.+.+-.|.+++
T Consensus 412 ~rt~~~ser~~~a~~Al~av~klVr~-CNe~a~rMertEeli~i~~~l 458 (695)
T KOG3523|consen 412 KRTEEGSERYETATKALKAVSKLVRD-CNEGARRMERTEELIRISRQL 458 (695)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 77788888887766666555543332 3 358888888877777653
No 210
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.35 E-value=5.5e+02 Score=27.82 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHH
Q 002807 430 MTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQD 509 (878)
Q Consensus 430 ~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~ 509 (878)
.|||...+.+|.+| +..++.|..=++.-+=.|+.++..|++-...-+.-+..|.+ -.|.- ..-.+..+
T Consensus 10 eGL~~~aLqKIqel---------E~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~-LkREn--q~l~e~c~ 77 (307)
T PF10481_consen 10 EGLPTRALQKIQEL---------EQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSA-LKREN--QSLMESCE 77 (307)
T ss_pred ccCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh-hhhhh--hhHHHHHH
Confidence 47888777777665 34444444444444556677777777665555555554443 11111 00112222
Q ss_pred HHHHHHHHHHH-HH---hhHHHHHHHHHHhHHHHhhcC------hhhhHhhCCCC----------CcCcC----CCCcch
Q 002807 510 RLNRFAGNLKQ-AA---ESDARIERSVRDHSALMSILD------RRPIESALPTL----------ARPIM----SLDATE 565 (878)
Q Consensus 510 ~l~k~~~~L~~-A~---~sD~~v~~k~~~~~~~l~~L~------~~~l~~~lP~~----------~~p~~----~l~~~~ 565 (878)
.+.+-+..|.. +. .--..+...+...+..|+.|. +.+|+..-... +.|-. .+.+..
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q 157 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQ 157 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhh
Confidence 33333332221 11 111123334444455555554 34454321111 11110 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
...-..+..|-++.+.--++|..++.++|..
T Consensus 158 ~~~~sk~e~L~ekynkeveerkrle~e~k~l 188 (307)
T PF10481_consen 158 YYSDSKYEELQEKYNKEVEERKRLEAEVKAL 188 (307)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1223455666677777778899999998865
No 211
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.15 E-value=5.1e+02 Score=27.39 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDD 601 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~dd 601 (878)
.++..-+.+-.+++.+..+.+.+....+..+...+
T Consensus 49 ~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~ 83 (225)
T COG1842 49 QAIARQKQLERKLEEAQARAEKLEEKAELALQAGN 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44555666777788888888888877777765544
No 212
>PRK04654 sec-independent translocase; Provisional
Probab=38.14 E-value=3.6e+02 Score=28.06 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 448 GPAALEAELQQLRDLRRVNQELLVQTEELLQKEAT 482 (878)
Q Consensus 448 g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ 482 (878)
|.++|-+....+-+.-++.+..++.+++.+++|..
T Consensus 21 GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 21 GPERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777777777777777777777777777776643
No 213
>PRK04098 sec-independent translocase; Provisional
Probab=37.83 E-value=1.8e+02 Score=28.85 Aligned_cols=55 Identities=15% Similarity=0.346 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHh
Q 002807 448 GPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAE 523 (878)
Q Consensus 448 g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~ 523 (878)
|...|-..+..+...-+..+..++++++.+++|-..+ .+++++.+|+..|+++..
T Consensus 21 GP~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~~~---------------------elk~e~~k~k~~l~~~~~ 75 (158)
T PRK04098 21 GPDKLPQAMVDIAKFFKAVKKTINDAKSTLDKEINIE---------------------EIKEEALKYKKEFESAVE 75 (158)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888888888888876433 456666666666665554
No 214
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=37.81 E-value=1.1e+03 Score=31.25 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=50.7
Q ss_pred CChHHHHHHHhhHHHHHHHHHHH--HHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHH
Q 002807 377 VPDSSAKALSRYTEMVDDVIRTQ--AEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALE 453 (878)
Q Consensus 377 vP~~V~ea~s~Y~e~k~~lvr~~--~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~ 453 (878)
||..||..++.|.+.-..|++.. -|..+.+..+-.+|+.+| +.+-++..|-.++.+-+..+|+ |+..|+
T Consensus 1117 iPq~Ih~m~~~~v~it~~~l~a~e~WeqAd~L~~~~~eFf~~L------d~~~gpLtl~SSm~~lv~Y~rq--gl~~LR 1187 (1191)
T PF05110_consen 1117 IPQRIHQMAASYVNITSHVLYAYELWEQADNLARENKEFFAEL------DTLMGPLTLHSSMTDLVRYTRQ--GLQWLR 1187 (1191)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH------HHhcCcccccccHHHHHHHHHH--HHHHHH
Confidence 89999999999999877777653 366666666667777765 3455677788888888888875 444443
No 215
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.80 E-value=9.2e+02 Score=30.26 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002807 575 SLRQLETLGAQRAGLEDMLKE 595 (878)
Q Consensus 575 ll~~l~~l~~qR~~l~~~lk~ 595 (878)
+-.++..++++-++++..++.
T Consensus 811 ~q~e~~~~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 811 LQSELTQLKEQIQTLLERTSA 831 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444555544444
No 216
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.66 E-value=2.4e+02 Score=31.50 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH-HHhccccc
Q 002807 715 NIQCREMIEDV-QRQMAGLN 733 (878)
Q Consensus 715 ~~E~~~L~~~l-~~~~~~~~ 733 (878)
..|-++|+..| ..+++.+-
T Consensus 375 ~eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 375 QEEDRQLISELVVSKMAQLL 394 (488)
T ss_pred hhHHHHHHHHHHHHHhhhcc
Confidence 34444555444 33454443
No 217
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=37.64 E-value=8e+02 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMKRK 599 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ 599 (878)
....+||.+-+++...+.+...+-++|.+....
T Consensus 287 ~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~ 319 (546)
T PF07888_consen 287 ALKEQLRSAQEQLQASQQEAELLRKELSDAVNV 319 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777777665433
No 218
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.09 E-value=6e+02 Score=27.94 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002807 574 QSLRQLETLGAQRAGLEDMLKE 595 (878)
Q Consensus 574 ~ll~~l~~l~~qR~~l~~~lk~ 595 (878)
.++.+++.++..+..+...+..
T Consensus 162 el~aei~~lk~~~~e~~eki~~ 183 (294)
T COG1340 162 ELKAEIDELKKKAREIHEKIQE 183 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 219
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.99 E-value=4.7e+02 Score=26.65 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhc
Q 002807 717 QCREMIEDVQRQM 729 (878)
Q Consensus 717 E~~~L~~~l~~~~ 729 (878)
+..+++..+...+
T Consensus 174 ~~~~~~~~l~~~l 186 (204)
T PF04740_consen 174 EIEELLQALQSGL 186 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555433
No 220
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=36.72 E-value=3.3e+02 Score=27.34 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCChHhH-----HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHH
Q 002807 127 EKAAVLFNLGAVYSQIGLSCDRTTVEGR-----RLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLM 201 (878)
Q Consensus 127 Eka~VLfNiaal~s~~A~~~~r~~~~~l-----K~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lm 201 (878)
|..+-=|+.+-+|.++|+.|+..+-+|+ +.|-.-...|=-+|+|+++... .+.++....|...-..+.-+...+
T Consensus 12 ~Q~N~E~yas~lYl~maa~~~~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~-~~~l~~I~~P~~~~~s~~e~f~~t 90 (167)
T COG1528 12 EQMNLEFYASNLYLQMAAWCSSESLPGFAKFLRAQAQEELTHAMKLFNYLNERGA-RPELKAIEAPPNKFSSLKELFEKT 90 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceecCcCCCccccCCHHHHHHHH
Confidence 4455567778888888888763333332 3344444457779999998753 222333333344434444444444
Q ss_pred H
Q 002807 202 L 202 (878)
Q Consensus 202 L 202 (878)
|
T Consensus 91 l 91 (167)
T COG1528 91 L 91 (167)
T ss_pred H
Confidence 4
No 221
>PTZ00332 paraflagellar rod protein; Provisional
Probab=36.38 E-value=7.8e+02 Score=28.99 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC
Q 002807 452 LEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT 493 (878)
Q Consensus 452 l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~ 493 (878)
+..+.+.-.++.++|.+-|..+.+.+.+-..+|..-|.+|++
T Consensus 262 ~sa~~daK~R~~~~CE~Dl~~i~d~iq~~~~eDa~~~KRy~a 303 (589)
T PTZ00332 262 TSQMKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAMKRYAT 303 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHh
Confidence 445555566778889999999999999999999999999997
No 222
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=36.21 E-value=2e+02 Score=35.04 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCC
Q 002807 780 YRPPEQPMVPGYG----HPPPPYGNPQPLHPYQPAPVPGAPYPPPQAQQQPLPPSHEYGQ----PAYPGWRGPYYNAHGQ 851 (878)
Q Consensus 780 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~ 851 (878)
|.|-...|.||-. .|-. --.+..|||+.-.--|+.....+++++.-|+-+...+. ++||-+...|--|||+
T Consensus 173 yh~~s~~P~p~~~~~~~~pan-~rv~~~~pp~vr~~~P~~t~~gpp~q~~tp~k~ygg~~eav~~p~p~qg~~~g~pppp 251 (1034)
T KOG0608|consen 173 YHPRSGTPMPGRHFMMDTPAN-ERVFRSPPPMVRNGNPSTTPSGPPQQQLTPPKYYGGTEEAVRPPHPIQGYRYGMPPPP 251 (1034)
T ss_pred cCCCCCCCCCcchhhccCccc-ccCCCCCcccccCCCCCCCCCCCcccccCCCCCCCCCcccccCCcCcccccCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002807 852 QPGSFPRPPYAAPAPYTYPNQSSYYK 877 (878)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (878)
+|+++.-+.-+.-+...||++|+|.+
T Consensus 252 ~p~s~~aqs~ps~qspt~~q~s~y~s 277 (1034)
T KOG0608|consen 252 YPMSPNAQSSPSRQSPTPPQQSAYDS 277 (1034)
T ss_pred CCCCcccccCcccCCCCCCCcccccc
No 223
>PRK01919 tatB sec-independent translocase; Provisional
Probab=36.17 E-value=1.9e+02 Score=28.97 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002807 448 GPAALEAELQQLRDLRRVNQELLVQTEELLQKEATED 484 (878)
Q Consensus 448 g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD 484 (878)
|.+.|-+....+-.+-.+.+..++++++.+++|...|
T Consensus 21 GPekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e~d 57 (169)
T PRK01919 21 GPERLPRVARTAGALFGRAQRYINDVKAEVSREIELD 57 (169)
T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6777777777887777888888888888888776544
No 224
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.12 E-value=4.6e+02 Score=32.78 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002807 452 LEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERS 531 (878)
Q Consensus 452 l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k 531 (878)
++.....-.+...-..+.|.+++..|+.=+..=+.||.++|.- ..+.+. ..+.+++..++.-+.++..-...+..+
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~---d~~~ea-~~~l~~~~~l~~ql~~l~~~~~~l~~~ 333 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV---DLNLEA-KAVLEQIVNVDNQLNELTFREAEISQL 333 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445566777777888887777778899999852 123333 445667777777776666555555555
Q ss_pred HHHhHHHHhhc
Q 002807 532 VRDHSALMSIL 542 (878)
Q Consensus 532 ~~~~~~~l~~L 542 (878)
|.+.-+.+..|
T Consensus 334 ~~~~hP~v~~l 344 (726)
T PRK09841 334 YKKDHPTYRAL 344 (726)
T ss_pred hcccCchHHHH
Confidence 55544444333
No 225
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=36.10 E-value=3.4e+02 Score=26.16 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002807 263 ALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKG-AAAQLLDAISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 263 ~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~-~~~~~~~~~~~l~~~i~~~l~~a~kdNd~ 335 (878)
.|=.|+...-.|..+.+.+++-+..-.+..|.+.+.+-...-.. ....+-+.+..|.+-+.+.|..+...||-
T Consensus 27 Lyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y~~~rL~~ANl~nd~ 100 (132)
T COG1516 27 LYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDYMVRRLVQANLKNDA 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 34456667777888888888888888888999988865433211 11356677888888888889998888884
No 226
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=35.97 E-value=2.6e+02 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.551 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 002807 625 DHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLE 659 (878)
Q Consensus 625 ~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~ 659 (878)
+.+++.++.+++....||....+.++.-....+..
T Consensus 98 ~~~cdsvD~sik~~y~liakceELn~~M~~v~~La 132 (149)
T PF10157_consen 98 DKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLA 132 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667789999999999999999888776665543
No 227
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=35.88 E-value=1.2e+02 Score=37.07 Aligned_cols=139 Identities=18% Similarity=0.259 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHH
Q 002807 502 TLTKNLQDRLNRFAGNLKQAAE-SDARIERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQ 578 (878)
Q Consensus 502 ~l~~~l~~~l~k~~~~L~~A~~-sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~ 578 (878)
.++....+.|.++...|+.-.. -...+.........++..|+ .++.+.++..... + + ...+..++.-|++
T Consensus 203 ~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~-l-s-----~~~i~~l~~El~R 275 (619)
T PF03999_consen 203 CLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSG-L-S-----LDTIEALEEELER 275 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCc-c-h-----HHHHHHHHHHHHH
Confidence 3444445555555555543222 12233334444556666677 4555555433221 0 1 2345556666666
Q ss_pred HHHHHHHH-HHHHHHHHHhhccCCchhHHhhc---CCC----hHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 579 LETLGAQR-AGLEDMLKEMKRKDDILPKLMTS---AGS----YEDLFRKE-ISKYDHICEEIAQNIEAQEQLLMQIQAQN 649 (878)
Q Consensus 579 l~~l~~qR-~~l~~~lk~~~~~ddI~~kLi~~---~~~----~e~lf~~e-L~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n 649 (878)
|+.|+.+. ..++..++..+.. +-.++.-. ... +.+.+.++ |..++.-+.++.+.......|++.|..+.
T Consensus 276 L~~lK~~~lk~~I~~~R~ei~e--lWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~ 353 (619)
T PF03999_consen 276 LEELKKQNLKEFIEKKRQEIEE--LWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPILELVEKWE 353 (619)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH--HHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665432 1222333322211 11111110 011 12233332 45666666777777777777777666543
No 228
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.82 E-value=7.9e+02 Score=28.93 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q 002807 464 RVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHS 536 (878)
Q Consensus 464 ~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~ 536 (878)
.-..+.+.+.+..|++-+.+=..||.++|.-- ++. ...+..++..+++.+.++..-=..+..+++...
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~---~~~--~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGIL---PDQ--EGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccC---ccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777667778899988631 111 224567777777777666554444444444433
No 229
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=35.33 E-value=74 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=23.3
Q ss_pred HHHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 268 EACYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 268 ~A~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
-+++..|....+.+++.+|+..|+.|.+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677888888888999999999887654
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=35.16 E-value=80 Score=26.47 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHH
Q 002807 125 HLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFA 169 (878)
Q Consensus 125 ~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~ 169 (878)
..+.+.+++|+|.+|...+. .+.|..+|++|--+|+
T Consensus 42 ~~~~a~~~~~lg~~~~~~g~---------~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 42 HPDTANTLNNLGECYYRLGD---------YEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTH---------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhhhc
Confidence 35678999999999986544 6889999999887764
No 231
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=35.00 E-value=6.2e+02 Score=27.44 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 678 KYREIKENINEGLKFYVTLQDAITNIKQQC 707 (878)
Q Consensus 678 ~y~el~~nl~eG~~FY~~L~~~l~~l~~~v 707 (878)
.|.+++..+....+|+.+|...++.+..+-
T Consensus 155 v~~el~~K~~~~k~~~e~Ll~~LgeFLeeH 184 (268)
T PF11802_consen 155 VFQELKTKIEKIKEYKEKLLSFLGEFLEEH 184 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888899999888888877653
No 232
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.46 E-value=6.5e+02 Score=27.51 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHH
Q 002807 561 LDATEDAIVGALKQSLRQ---LETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEA 637 (878)
Q Consensus 561 l~~~~~~~v~~Lr~ll~~---l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~ 637 (878)
.+++++..--.|+.+.+. .+.+.+.++.+-..+ |-|..+|...-.....-|-.++..++.+...+......
T Consensus 9 F~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~l------dvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~ 82 (291)
T PF10475_consen 9 FDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYL------DVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVI 82 (291)
T ss_pred cCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-hhhchhHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 638 QEQLLMQIQAQNEEFSA-IFNLEDYRASREKC------YKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDF 710 (878)
Q Consensus 638 Q~~Ll~~I~~~n~~f~~-~~~~~~~~~~re~~------l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df 710 (878)
=.++=+.|....+.+.. ....-...++|+.+ ++.+....+.-..|..-|++|- |..-.+.+...++-..++
T Consensus 83 ~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~d--y~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 83 CKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGD--YPGALDLIEECQQLLEEL 160 (291)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhc
No 233
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=34.40 E-value=7.8e+02 Score=28.46 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhc---CCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHH----HHHHHHHHH
Q 002807 389 TEMVDDVIRTQAEKLQQGSELTRVRLKEM---DLPDSILALEGNMTLPADLKEEVEAVQISGGPAAL----EAELQQLRD 461 (878)
Q Consensus 389 ~e~k~~lvr~~~~~~~~~~~~l~~~L~~l---~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l----~~~l~~l~~ 461 (878)
.+............++.+++.|...|..| .+|..+. .+.+=+..|.+ +-..+|+..| +..+++++.
T Consensus 68 ~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~---~~~~~~ktL~D----FVd~~~v~~L~~~l~~~i~~~~~ 140 (412)
T PF04108_consen 68 YEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFFR---PPGEEPKTLYD----FVDEDSVEILRENLKISIDELQA 140 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCcccc---CCCCCCCcHHH----hcCHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566667777777777766554 2322211 11122333333 2233444444 555566666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002807 462 LRRVNQELLVQTEELLQ 478 (878)
Q Consensus 462 l~~~~~~~L~e~~~~L~ 478 (878)
++....+.+.....+|+
T Consensus 141 ~~~~~d~~~~~~~~~~~ 157 (412)
T PF04108_consen 141 IQEQLDNSLLQFDNDLR 157 (412)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 65555555544333333
No 234
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=34.32 E-value=5.7e+02 Score=26.83 Aligned_cols=118 Identities=11% Similarity=0.117 Sum_probs=61.1
Q ss_pred HHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 399 QAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQ 478 (878)
Q Consensus 399 ~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~ 478 (878)
.+.++-.++..|.+.|.++++-..|+.. ...||+. -++|.-.+..-.+...++-+.++.+.-+-+
T Consensus 17 ~~~~vG~lTR~LHdsl~~lg~d~~l~~a--~~~iPDA-------------rdRL~YVi~~TEqAA~rtLnaVE~a~p~~d 81 (214)
T PRK11166 17 IIARIGQLTRMLRDSLRELGLDQAIEEA--AEAIPDA-------------RDRLDYVAQMTEQAAERVLNAVEAAQPHQD 81 (214)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHH--HHhCCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567778888999999999987666422 2345542 222333333333333344444444444433
Q ss_pred HHHhHHHHHHHhhCCCCCCCCchH-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002807 479 KEATEDAQFRSQFGTRWTRPQSST-LTKNLQDRLNRFAGNLKQAAESDARIERSVRDH 535 (878)
Q Consensus 479 ~E~~eD~~~R~kyG~~W~r~~S~~-l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~ 535 (878)
.=..+...++.+ |.+--... -...++.-+...+++|....+....+...+-++
T Consensus 82 ~l~~~a~~L~~~----w~~l~~~~~~~~e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI 135 (214)
T PRK11166 82 QLEKEAKALDAR----WDEWFANPIELADARELVTDTRAFLADVPEHTSFTNAQLLEI 135 (214)
T ss_pred HHHHHHHHHHHH----HHHHHcCCCCHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 333344445443 44211111 123455555666677776666555555555444
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=34.06 E-value=2.5e+02 Score=23.31 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHH
Q 002807 265 FYAEACYRYSLELHEKEEIAEEIARLKSGISALT 298 (878)
Q Consensus 265 f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~ 298 (878)
..|.+++.+|......+++-+|+.+++.|.++.+
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 3466777788888888888899999988887765
No 236
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=33.92 E-value=86 Score=29.77 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=16.9
Q ss_pred HHhcCChhHHHHHHHHHHHHHHH
Q 002807 443 VQISGGPAALEAELQQLRDLRRV 465 (878)
Q Consensus 443 i~~~gg~~~l~~~l~~l~~l~~~ 465 (878)
+-=.+|..+++.+++.+..++..
T Consensus 107 ~mFGD~pnSmkkMl~nveslk~~ 129 (132)
T PF09432_consen 107 LMFGDGPNSMKKMLQNVESLKSK 129 (132)
T ss_pred HHhcCChHHHHHHHHHHHHHHHH
Confidence 33357888999999888877643
No 237
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=33.87 E-value=7.7e+02 Score=28.23 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhH
Q 002807 507 LQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIE 548 (878)
Q Consensus 507 l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~ 548 (878)
+.+=+.++...=..|.+|-..| .+....|+-|| +..|.
T Consensus 66 i~~L~~~i~~ik~kA~~sE~~V----~~it~dIk~LD~AKrNLT 105 (383)
T PF04100_consen 66 IQELFEKISEIKSKAEESEQMV----QEITRDIKQLDNAKRNLT 105 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3333333444444666666544 46667777777 55554
No 238
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.41 E-value=3.8e+02 Score=24.46 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 451 ALEAELQQLRDLRRVNQELLVQTEELLQKEAT--EDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARI 528 (878)
Q Consensus 451 ~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~--eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v 528 (878)
.+...++.|..-+......+.+....+++=.. .|..+-..-|...-..+-+++...+.++++.+...++.-.+.=..+
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l 89 (105)
T cd00632 10 QLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDL 89 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555544332 4556667788766667778888888888888888777666555556
Q ss_pred HHHHHHhHHHHh
Q 002807 529 ERSVRDHSALMS 540 (878)
Q Consensus 529 ~~k~~~~~~~l~ 540 (878)
.+.+.+.+..|.
T Consensus 90 ~~~~~elk~~l~ 101 (105)
T cd00632 90 QEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 239
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=33.26 E-value=6.2e+02 Score=26.95 Aligned_cols=125 Identities=11% Similarity=0.083 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 568 IVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQA 647 (878)
Q Consensus 568 ~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~ 647 (878)
.-..|..++++|..-.++.++...+.-..++. .-..||.+...... +-.+..+....+++|++++..=..-..+|..
T Consensus 72 ~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNa--WDr~LI~ngekI~~-Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~ 148 (254)
T KOG2196|consen 72 TYKTLEELINKWSLELEEQERVFLQQATQVNA--WDRTLIENGEKISG-LYNEVVKVKLDQKRLDQELEFILSQQQELED 148 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhCcHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999987666655555444333332 33566666532222 3445566667777888777543333333333
Q ss_pred HHHHHHHh----hh---chhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002807 648 QNEEFSAI----FN---LEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVT 695 (878)
Q Consensus 648 ~n~~f~~~----~~---~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~ 695 (878)
....|... .. .+....+|++.++.-.+--...+.+.++|.+-++=-|+
T Consensus 149 ~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 149 LLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 33222221 11 23445778877655444444555555555555554443
No 240
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.20 E-value=5.8e+02 Score=30.02 Aligned_cols=22 Identities=14% Similarity=-0.006 Sum_probs=9.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 002807 683 KENINEGLKFYVTLQDAITNIK 704 (878)
Q Consensus 683 ~~nl~eG~~FY~~L~~~l~~l~ 704 (878)
+..+++-.++=.++...|+++.
T Consensus 89 rqElq~~saq~~dle~KIkeLE 110 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLG 110 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHH
Confidence 3444433344444444444443
No 241
>PRK10869 recombination and repair protein; Provisional
Probab=33.12 E-value=9.4e+02 Score=29.01 Aligned_cols=45 Identities=4% Similarity=0.025 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 663 ASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQC 707 (878)
Q Consensus 663 ~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v 707 (878)
++.+.-++.|.+.-+...++...+.+..+=|..+...|++.++++
T Consensus 327 ~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 327 QQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677777777788888888888888888888777764
No 242
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=33.09 E-value=1.1e+03 Score=29.85 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=58.4
Q ss_pred hhccCChHHHHHHHh-hHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHH---HHHHHHhcCC
Q 002807 373 FASLVPDSSAKALSR-YTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKE---EVEAVQISGG 448 (878)
Q Consensus 373 F~~LvP~~V~ea~s~-Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~---~~~~i~~~gg 448 (878)
|-+=+|..+...... |++-++.+......-=...-..+.+.+.. ..+..++ +|.+ ...+.+ ..
T Consensus 188 ~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~lg~~i~~~l~~----~~~~~L~-------~i~~l~~~~~~~~--~~ 254 (806)
T PF05478_consen 188 FLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLLGGDIQDQLGS----NVYPALD-------SILDLAQAMQETK--EL 254 (806)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----hhHHHHH-------HHHHHHHHHHHHH--HH
Confidence 666677777777766 87777766554322222222222222222 2222222 2222 222222 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHhhCC
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEATE------DAQFRSQFGT 493 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~e------D~~~R~kyG~ 493 (878)
+..+...+.+|.....+.++.|.++++.|...-.. |..+|.....
T Consensus 255 L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~ 305 (806)
T PF05478_consen 255 LQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDI 305 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccc
Confidence 55566677777777777777777777777776655 6667666654
No 243
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=33.07 E-value=4.8e+02 Score=25.63 Aligned_cols=39 Identities=13% Similarity=-0.011 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcC
Q 002807 265 FYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKS 303 (878)
Q Consensus 265 f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~ 303 (878)
..+.+++..+....+.+.+..++.++..|.+.++.+...
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666666666777889999999999999888654
No 244
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=33.06 E-value=6e+02 Score=26.73 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCC
Q 002807 670 KQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQD 736 (878)
Q Consensus 670 ~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~~~~~~~~~ 736 (878)
..+..+=+.|......+..-..+|. .....+.+.|.+|-..|-.-.++.+-.....++..++.+
T Consensus 164 ~~~~~~~~~Y~~~v~~~~~~~~~~~---~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~ 227 (236)
T cd07651 164 SSINSSRRDYQNAVKALRELNEIWN---REWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDD 227 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3334444445555554444444332 223455556667877777777766665655666555554
No 245
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=32.77 E-value=6.5e+02 Score=27.01 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002807 631 IAQNIEAQEQLLMQIQA 647 (878)
Q Consensus 631 I~~~~~~Q~~Ll~~I~~ 647 (878)
|...+...+.-|.++++
T Consensus 183 i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRD 199 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 246
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.51 E-value=2.8e+02 Score=31.05 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEAT 482 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ 482 (878)
++.|++..++|++..+.-.+.+++..+..+....
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~s 39 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSS 39 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777666665543
No 247
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.04 E-value=1.4e+02 Score=33.20 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.5
Q ss_pred ccCCchhHHhh
Q 002807 598 RKDDILPKLMT 608 (878)
Q Consensus 598 ~~ddI~~kLi~ 608 (878)
++|+-...|+.
T Consensus 44 ~~Dg~s~~ll~ 54 (365)
T KOG2391|consen 44 HNDGRSRLLLQ 54 (365)
T ss_pred ecCCCccchhh
Confidence 34444444443
No 248
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.00 E-value=1.4e+03 Score=30.75 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=13.3
Q ss_pred HHHHHhhhcCCcchhhHHHHHHHHHHHHHH
Q 002807 34 LRNYISLTYSEREAFNLEDDLETVKQLRSD 63 (878)
Q Consensus 34 L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~ 63 (878)
+++.+..-||- +.|...+..+..+|..
T Consensus 171 rk~~~d~if~~---~~y~k~~~~~~~~~k~ 197 (1311)
T TIGR00606 171 LKQKFDEIFSA---TRYIKALETLRQVRQT 197 (1311)
T ss_pred HHHHHHHHhhh---hHHHHHHHHHHHHHHH
Confidence 44555555543 4455545555554443
No 249
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=31.75 E-value=4.2e+02 Score=32.61 Aligned_cols=9 Identities=33% Similarity=0.346 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 002807 645 IQAQNEEFS 653 (878)
Q Consensus 645 I~~~n~~f~ 653 (878)
|+.+|.+|.
T Consensus 702 IQkAWRrfv 710 (1106)
T KOG0162|consen 702 IQKAWRRFV 710 (1106)
T ss_pred HHHHHHHHH
Confidence 333333333
No 250
>PRK03918 chromosome segregation protein; Provisional
Probab=31.58 E-value=1.2e+03 Score=29.68 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 002807 502 TLTKNLQDRLNRFAGNLKQAA 522 (878)
Q Consensus 502 ~l~~~l~~~l~k~~~~L~~A~ 522 (878)
++...+..++..++.-+....
T Consensus 452 el~~~~~~ei~~l~~~~~~l~ 472 (880)
T PRK03918 452 ELLEEYTAELKRIEKELKEIE 472 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666655554443
No 251
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=31.02 E-value=4.3e+02 Score=26.07 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCC-----h-----HHHHHHHHhhhhHHHHH
Q 002807 562 DATEDAIVGALKQ-SLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS-----Y-----EDLFRKEISKYDHICEE 630 (878)
Q Consensus 562 ~~~~~~~v~~Lr~-ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~-----~-----e~lf~~eL~kf~~l~~~ 630 (878)
+++....|++|.. --+--......|+.|+..-+....+-..+...+...|. . +.-++.||.+|| ..-
T Consensus 22 n~~~~~~Ir~Li~~Q~~~Er~w~~~Re~l~~k~~~r~e~~k~l~~~l~s~g~~i~~~~~~~~~~~e~~~EL~~fD--~kV 99 (150)
T PF10454_consen 22 NPEFLQRIRRLIKEQHDHERQWWEGREALIAKQKARAEKKKKLDEVLRSVGGGISDQSEVTTPEKEDEAELDKFD--EKV 99 (150)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHHH
Q 002807 631 IAQNIEAQEQLLMQIQAQNEEFSAIFN---LEDYRASREKCYKQIQAAIA 677 (878)
Q Consensus 631 I~~~~~~Q~~Ll~~I~~~n~~f~~~~~---~~~~~~~re~~l~~L~~A~~ 677 (878)
+.+...--.....+++...--|-.+.. .......+.++|+-|.+-|.
T Consensus 100 ~~a~~~m~~~~~~~L~~LgVPfF~~~~~~~~~el~~~q~rmL~lL~Dl~~ 149 (150)
T PF10454_consen 100 YKASKQMSKEQQAELKELGVPFFYIKEDISDEELRELQKRMLQLLEDLCK 149 (150)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeeeCCCCCCcHHHHHHHHHHHHHHHHHhc
No 252
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=30.55 E-value=5.4e+02 Score=25.42 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 002807 569 VGALKQSLRQLE 580 (878)
Q Consensus 569 v~~Lr~ll~~l~ 580 (878)
+..++.+.+.+.
T Consensus 145 l~~~~~~~~~~~ 156 (213)
T cd00176 145 LKKHKELEEELE 156 (213)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 253
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.41 E-value=9.1e+02 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 570 GALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 570 ~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
+++..+-..+.....++..+.++|++.
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~ 71 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555543
No 254
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=29.90 E-value=7e+02 Score=26.53 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCC----h---HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002807 568 IVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS----Y---EDLFRKEISKYDHICEEIAQNIEAQEQ 640 (878)
Q Consensus 568 ~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~----~---e~lf~~eL~kf~~l~~~I~~~~~~Q~~ 640 (878)
+.+.-..++.+.+.+-.....+-++|....- +.+ ..|+..... + -+-|.+++. +...+.|+........
T Consensus 67 i~~sW~~il~QTE~isk~~~~~Aeeln~~~~-~kL-s~L~~~k~~~rK~~~~~~q~i~~e~~--~~t~~eveK~Kk~Y~~ 142 (237)
T cd07685 67 ISQSWAVLVSQTETLSQVLRKHAEDLNAGPL-SKL-SLLIRDKQQLRKTFSEQWQLLKQEYT--KTTQQDIEKLKSQYRS 142 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666644321 111 222222111 1 123444433 2223467777777788
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHH---HHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 641 LLMQIQAQNEEFSAIFNLEDYRASREKCY---KQIQAAIAKYREIK--ENINEGLKFYVTLQDAITNIKQQCSDFVM 712 (878)
Q Consensus 641 Ll~~I~~~n~~f~~~~~~~~~~~~re~~l---~~L~~A~~~y~el~--~nl~eG~~FY~~L~~~l~~l~~~v~df~~ 712 (878)
+......+-.+|....+.....+.+++.+ .+|..+.+.|.=-. .|.-+---||.+|-+.++.++.-.++++.
T Consensus 143 ~c~~~e~AR~K~ekas~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy~q~lP~LLd~lQ~lnE~~v~ 219 (237)
T cd07685 143 LAKDSAQAKRKYQEASKDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQRILPGLLESLQSLHEEMVL 219 (237)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 88888887777766544323333333332 33444444443211 12222223555666666666655554443
No 255
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.62 E-value=3.6e+02 Score=25.85 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 002807 392 VDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLV 471 (878)
Q Consensus 392 k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~ 471 (878)
..+=+....+.+....+.|...|..++ ..|+.. ..+-..+.+.+.+++ +.+..|..-++.++.+-...+..|.
T Consensus 48 v~kql~~vs~~l~~tKkhLsqRId~vd--~klDe~---~ei~~~i~~eV~~v~--~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHLSQRIDRVD--DKLDEQ---KEISKQIKDEVTEVR--EDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHH---HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666553 222222 234556666666665 3466666666666666555555555
Q ss_pred HHH
Q 002807 472 QTE 474 (878)
Q Consensus 472 e~~ 474 (878)
+++
T Consensus 121 ~ie 123 (126)
T PF07889_consen 121 EIE 123 (126)
T ss_pred HHh
Confidence 443
No 256
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=29.53 E-value=6.9e+02 Score=26.28 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 002807 673 QAAIAKYREIKENINEGLKFYVTL 696 (878)
Q Consensus 673 ~~A~~~y~el~~nl~eG~~FY~~L 696 (878)
..-++.|.++++.+++-.+-|-+|
T Consensus 102 ~r~~eey~~lk~h~d~lR~~~lgl 125 (286)
T KOG4451|consen 102 GRKGEEYMELKSHADELRQINLGL 125 (286)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCc
Confidence 345778888888888888777665
No 257
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.01 E-value=1.4e+03 Score=29.59 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 002807 717 QCREMIEDVQR 727 (878)
Q Consensus 717 E~~~L~~~l~~ 727 (878)
..++|..+|..
T Consensus 903 ~le~~V~~In~ 913 (1072)
T KOG0979|consen 903 KLEEMVEQINE 913 (1072)
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 258
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=28.80 E-value=1.5e+02 Score=28.65 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHH
Q 002807 677 AKYREIKENINEGLKFYVTLQDAIT--NIKQQCSDFVMTRNIQCREMIEDVQ 726 (878)
Q Consensus 677 ~~y~el~~nl~eG~~FY~~L~~~l~--~l~~~v~df~~~R~~E~~~L~~~l~ 726 (878)
+..++|...+..|.++|....+.+. .|+....+|...|+.-..+|...|.
T Consensus 3 ~~Ln~Lie~~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~ 54 (139)
T TIGR02284 3 HSLNDLIEISIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVA 54 (139)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999998886 4555555555555555555544443
No 259
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.76 E-value=1.2e+03 Score=28.86 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=31.7
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhC
Q 002807 499 QSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESAL 551 (878)
Q Consensus 499 ~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~l 551 (878)
..+.+++.+.+-..++.+.=..|.+++..|+ +....|+-|| +..|...|
T Consensus 73 ~l~da~~ai~eL~~~i~eiks~ae~Te~~V~----eiTrdIKqLD~AKkNLTtSi 123 (793)
T KOG2180|consen 73 NLADAQAAIEELFQKIQEIKSVAESTEAMVQ----EITRDIKQLDFAKKNLTTSI 123 (793)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHhhhHHHhhHHHHH
Confidence 3566677777777777776677888877555 5556666677 55554433
No 260
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.58 E-value=5.2e+02 Score=24.64 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q 002807 452 LEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFG 492 (878)
Q Consensus 452 l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG 492 (878)
+...+..+..........+..+...|+.....-.....+|-
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555554
No 261
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.58 E-value=7.4e+02 Score=26.37 Aligned_cols=122 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002807 456 LQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDH 535 (878)
Q Consensus 456 l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~ 535 (878)
++.+.+........=.++.+..++=..+-..+...|. .+..+++.++.+.++-...=....+.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~-------------~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYR-------------QLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCCchh
Q 002807 536 SALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLR-QLETLGAQRAGLEDMLKEMKRKDDILP 604 (878)
Q Consensus 536 ~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~-~l~~l~~qR~~l~~~lk~~~~~ddI~~ 604 (878)
...++.+. ..+|.-.| ...+..|+..++ ++=-+..+|..-++.|+..+.+-|+..
T Consensus 90 ~~qi~~~~~~~~~l~p~m--------------~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~ 147 (251)
T PF11932_consen 90 EQQIEQIEETRQELVPLM--------------EQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSL 147 (251)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCH
No 262
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=28.56 E-value=7.9e+02 Score=29.99 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=26.5
Q ss_pred hCC--CCCCC----CchHhHHHHHHHHHHHHHHHHHHHh
Q 002807 491 FGT--RWTRP----QSSTLTKNLQDRLNRFAGNLKQAAE 523 (878)
Q Consensus 491 yG~--~W~r~----~S~~l~~~l~~~l~k~~~~L~~A~~ 523 (878)
+|. .|.+. -++...+.++++|-.-+.++.-|..
T Consensus 180 ~g~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY~~iak~ 218 (657)
T PLN02910 180 KGKYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKS 218 (657)
T ss_pred ccceeeecccccccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 676 79874 3577788999999999999888874
No 263
>PHA03160 hypothetical protein; Provisional
Probab=28.55 E-value=1.6e+02 Score=34.31 Aligned_cols=11 Identities=9% Similarity=-0.010 Sum_probs=5.6
Q ss_pred HHHHHHHHhHH
Q 002807 527 RIERSVRDHSA 537 (878)
Q Consensus 527 ~v~~k~~~~~~ 537 (878)
-|+++|+..+.
T Consensus 203 fIrdR~~~Lk~ 213 (499)
T PHA03160 203 FIKDRLQLLKT 213 (499)
T ss_pred HHHHHHHHHHH
Confidence 35555555443
No 264
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.52 E-value=1.1e+03 Score=28.39 Aligned_cols=25 Identities=8% Similarity=-0.043 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 002807 575 SLRQLETLGAQRAGLEDMLKEMKRK 599 (878)
Q Consensus 575 ll~~l~~l~~qR~~l~~~lk~~~~~ 599 (878)
+.+.++++..+-+.+..+++.....
T Consensus 271 ~~~~l~~~~~~l~d~~~~l~~~~~~ 295 (563)
T TIGR00634 271 LAEQVGNALTEVEEATRELQNYLDE 295 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555554433
No 265
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=28.38 E-value=3.1e+02 Score=28.69 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q 002807 504 TKNLQDRLNRFAGNLKQAAESDARIERSVRDHS 536 (878)
Q Consensus 504 ~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~ 536 (878)
...|+.-+.+...+|....+.-..+...+-++.
T Consensus 92 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm 124 (214)
T PF04344_consen 92 PDEFRELAHETDAFLQQVEENAQQLRAQLTEIM 124 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345777777778888777766666666655543
No 266
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.16 E-value=8.2e+02 Score=26.73 Aligned_cols=259 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC-CCC-CCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002807 457 QQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT-RWT-RPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRD 534 (878)
Q Consensus 457 ~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~-~W~-r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~ 534 (878)
..|..|..+...-|+.+..+ +.++..+..+... +.. ....+.+...|..+|..++..|..+..-...+.-.++.
T Consensus 4 ~eL~~LNdRla~YIekVr~L----E~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFL----EQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Q ss_pred hHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCC
Q 002807 535 HSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS 612 (878)
Q Consensus 535 ~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~ 612 (878)
....+.-+- .....+..-....-+..+-...+......-.+-.++..++.+..-+...-.+.+..-.-.-. -.....
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~-~~~~~e 158 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ-SSVTVE 158 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-ccccee
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002807 613 YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKF 692 (878)
Q Consensus 613 ~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~F 692 (878)
.+..+... +...|.+--...+.++...+...+..-..+ ...........-..+..+-.-..+++..+..-..=
T Consensus 159 ~~~~~~~d------L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k-~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~e 231 (312)
T PF00038_consen 159 VDQFRSSD------LSAALREIRAQYEEIAQKNREELEEWYQSK-LEELRQQSEKSSEELESAKEELKELRRQIQSLQAE 231 (312)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccc------chhhhhhHHHHHHHHHhhhhhhhhhhcccc-cccccccccccccccchhHhHHHHHHhhhhHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002807 693 YVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQR 727 (878)
Q Consensus 693 Y~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~ 727 (878)
..+|......|...+.+.-.....+...+...|..
T Consensus 232 l~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~ 266 (312)
T PF00038_consen 232 LESLRAKNASLERQLRELEQRLDEEREEYQAEIAE 266 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhc
No 267
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=28.01 E-value=1.2e+02 Score=21.65 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=24.4
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
|.++...|..+...+++.+|+.++..|....+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4566677888888899999999998887776644
No 268
>smart00035 CLa CLUSTERIN alpha chain.
Probab=27.87 E-value=2.3e+02 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q 002807 463 RRVNQELLVQTEELLQKEATEDAQFRSQFG 492 (878)
Q Consensus 463 ~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG 492 (878)
.+.-.++|...+..+..=..-=++|+.+||
T Consensus 111 tqqYd~lL~~~q~~m~nTs~Lle~ln~QFg 140 (216)
T smart00035 111 TQQYDQLLQSYQKKMLNTSSLLEQLNEQFG 140 (216)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 344444454444444444444556788887
No 269
>PRK15313 autotransport protein MisL; Provisional
Probab=27.84 E-value=1.5e+02 Score=37.55 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=6.6
Q ss_pred CCCCCCCCchHh
Q 002807 492 GTRWTRPQSSTL 503 (878)
Q Consensus 492 G~~W~r~~S~~l 503 (878)
++.|+..-++.+
T Consensus 425 ~S~WnmTgdS~v 436 (955)
T PRK15313 425 DATWNMTSSSTL 436 (955)
T ss_pred ccEEeeecCccc
Confidence 346766555544
No 270
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=27.81 E-value=5.1e+02 Score=24.24 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 002807 263 ALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKG-AAAQLLDAISKLEANLNRNLDRAVKEND 334 (878)
Q Consensus 263 ~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~-~~~~~~~~~~~l~~~i~~~l~~a~kdNd 334 (878)
.|=.++.+...|..+.+.+.+-.....+..|...+.+-...-.. ....+-..+..|..-+.+.+-.+...||
T Consensus 25 Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~L~~A~~~~d 97 (122)
T PF02561_consen 25 LYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQLVQANLKKD 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44455556666666666666666666666666666655433211 1234555666677777777777666665
No 271
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.56 E-value=8.8e+02 Score=26.89 Aligned_cols=212 Identities=18% Similarity=0.260 Sum_probs=101.9
Q ss_pred HHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcChhhhHhhCCCCCc--C
Q 002807 480 EATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPTLAR--P 557 (878)
Q Consensus 480 E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~~~~l~~~lP~~~~--p 557 (878)
|...|-.+.++-|-. --+-|..+..+...+.+.|..+.+--..++.-+..-.+.|.+++.+. +...+.+.. +
T Consensus 73 EkerDLelaA~iGqs-----Ll~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~-ee~~~~~~~~~~ 146 (306)
T PF04849_consen 73 EKERDLELAARIGQS-----LLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDD-EESEPESSESTP 146 (306)
T ss_pred HHhhhHHHHHHHhHH-----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHh-hhcccccCCCcc
Confidence 455566677777741 01225667788888888888888877778777777778888888211 111122211 1
Q ss_pred cCC----CCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCchhHHhhcCCChHHHHHHHHhhh
Q 002807 558 IMS----LDA----TEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRK-----DDILPKLMTSAGSYEDLFRKEISKY 624 (878)
Q Consensus 558 ~~~----l~~----~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~-----ddI~~kLi~~~~~~e~lf~~eL~kf 624 (878)
... ... +.+..-++||.+-+.-..|+.+...+..+....-.+ .|+...|..... .-.-+.++|.+
T Consensus 147 ~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~-qia~LseELa~- 224 (306)
T PF04849_consen 147 LRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQ-QIASLSEELAR- 224 (306)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcch-hHHHHHHHHHH-
Confidence 100 000 111222223323222233333333332221111000 011111111111 11223444432
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002807 625 DHICEEIAQNIEAQEQ---LLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAIT 701 (878)
Q Consensus 625 ~~l~~~I~~~~~~Q~~---Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~ 701 (878)
..+++...|++ |+.+|.+.-.+. .....+-+...+.|..+-+.=..|...|.+--.=|.....++.
T Consensus 225 -----k~Ee~~rQQEEIt~LlsqivdlQ~r~------k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 225 -----KTEENRRQQEEITSLLSQIVDLQQRC------KQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333 333333332222 2233456667777777777777787877777777777777777
Q ss_pred HHHHHHHHH
Q 002807 702 NIKQQCSDF 710 (878)
Q Consensus 702 ~l~~~v~df 710 (878)
..+..++.+
T Consensus 294 EaQEElk~l 302 (306)
T PF04849_consen 294 EAQEELKTL 302 (306)
T ss_pred HHHHHHHHh
Confidence 777666554
No 272
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=27.40 E-value=88 Score=19.66 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=19.0
Q ss_pred HHHHHhHhhhhhhchHHHHHHHHHHHH
Q 002807 269 ACYRYSLELHEKEEIAEEIARLKSGIS 295 (878)
Q Consensus 269 A~y~~a~~~~e~~~~GeaIa~L~~A~~ 295 (878)
+++..|..+...+++..++.+++.+.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566667777788888888876643
No 273
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=27.39 E-value=4.7e+02 Score=23.74 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 622 SKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAI 655 (878)
Q Consensus 622 ~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~ 655 (878)
..|-..++.|..++..=+..+..|...+......
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~ 37 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTP 37 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466667778777777777788888888776543
No 274
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=27.36 E-value=3.4e+02 Score=26.67 Aligned_cols=81 Identities=15% Similarity=0.326 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHH--HHHH
Q 002807 623 KYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLK--FYV--TLQD 698 (878)
Q Consensus 623 kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~--FY~--~L~~ 698 (878)
.|+...+++..+++.=.-++++|...+...- ..|...+++|..-...-.+|..++.+... +|. .+..
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld---------~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~ 101 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPIIKEIDKLNVELD---------RPRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYAR 101 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC---------CchhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHH
Confidence 4666777777777777777777777665432 22344455555555555666666666443 222 4667
Q ss_pred HHHHHHHHHHHHHH
Q 002807 699 AITNIKQQCSDFVM 712 (878)
Q Consensus 699 ~l~~l~~~v~df~~ 712 (878)
.+.+|...+..|+.
T Consensus 102 Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 102 KIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHHHhc
Confidence 77788888887775
No 275
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.23 E-value=7.5e+02 Score=25.97 Aligned_cols=71 Identities=8% Similarity=0.266 Sum_probs=41.5
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--hhhchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002807 613 YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQ----NEEFSA--IFNLEDYRASREKCYKQIQAAIAKYREIKENI 686 (878)
Q Consensus 613 ~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~----n~~f~~--~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl 686 (878)
.+.+..+.|.+|......|... ...|+.++... ...|.. ++...+.++.=+++..+++.|..+|..+..+=
T Consensus 59 dDe~~~~~l~kFs~~l~El~~~---~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k 135 (215)
T cd07601 59 DDEILVSTLKQFSKVVDELSTM---HSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKR 135 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCC
Confidence 3556666788887766655433 45555544432 233432 22333445555667788888888888877763
No 276
>PF13310 Virulence_RhuM: Virulence protein RhuM family
Probab=26.98 E-value=7.4e+02 Score=26.71 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=35.5
Q ss_pred HHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC
Q 002807 485 AQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD 543 (878)
Q Consensus 485 ~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~ 543 (878)
.+.|.-|-....-.++++.++.|...+++---+--.+.-+=..|..+-+..++++.+-+
T Consensus 98 qki~di~a~s~DYd~~~~~t~~Ffa~vQNKlh~Av~g~TAAElI~~Rad~~kp~MGLTt 156 (260)
T PF13310_consen 98 QKITDIYATSIDYDPKSEETKQFFATVQNKLHYAVTGHTAAELIYERADAEKPNMGLTT 156 (260)
T ss_pred HHHHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHhccChHHHHHhhcccCCCCCCccc
Confidence 33444455444556788889999888876554444444445555566555666665544
No 277
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=26.94 E-value=9.4e+02 Score=27.02 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002807 663 ASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREM 721 (878)
Q Consensus 663 ~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L 721 (878)
..|......+..++..|.|-..|+..-.+ +-+...++.+.+.+.+|+..=+.--.++
T Consensus 144 ~~q~dw~~G~~~a~~~y~d~a~n~a~~~~--~~~~~af~gm~dal~~fvttGk~~f~d~ 200 (332)
T TIGR01541 144 ALQGDWLAGARSGLADYGETATNVASAAA--QLATNAFGGMASNIAQMLTTGKANWKSF 200 (332)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 34445556666677777665555544332 3344455555666666665444443333
No 278
>PF14967 FAM70: FAM70 protein
Probab=26.93 E-value=4.6e+02 Score=28.74 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 002807 674 AAIAKYREIKENINEGLKFYVTL 696 (878)
Q Consensus 674 ~A~~~y~el~~nl~eG~~FY~~L 696 (878)
.+|-.|..+++ +.+-+.+|.=|
T Consensus 177 ~~YyEf~gV~S-CqDVvhLy~LL 198 (327)
T PF14967_consen 177 GSYYEFVGVSS-CQDVVHLYRLL 198 (327)
T ss_pred CcceEEeccch-HHHHHHHHHHH
Confidence 34445555443 56667777654
No 279
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=26.80 E-value=1e+03 Score=27.46 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhcc
Q 002807 584 AQRAGLEDMLKEMKRK 599 (878)
Q Consensus 584 ~qR~~l~~~lk~~~~~ 599 (878)
.+|.+++..+.+..-.
T Consensus 249 eqr~ELM~l~qqAfgs 264 (652)
T COG4867 249 EQRDELMALAQQAFGS 264 (652)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4677788777766533
No 280
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.74 E-value=1.6e+03 Score=29.66 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 002807 466 NQELLVQTEELLQK 479 (878)
Q Consensus 466 ~~~~L~e~~~~L~~ 479 (878)
.-..+.++++.|+.
T Consensus 77 ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 77 FPKLSAELRQQLNN 90 (1109)
T ss_pred hHHHHHHHHHHHHh
Confidence 33344444444444
No 281
>PTZ00464 SNF-7-like protein; Provisional
Probab=26.67 E-value=7.6e+02 Score=25.84 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002807 676 IAKYREIKENINEGLKFYVTLQDAITN 702 (878)
Q Consensus 676 ~~~y~el~~nl~eG~~FY~~L~~~l~~ 702 (878)
++....|...+.|.+..-+.+.+.++.
T Consensus 123 id~Vd~l~Dei~E~~e~~~EI~e~Ls~ 149 (211)
T PTZ00464 123 VDKVEDLQDELADLYEDTQEIQEIMGR 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555556666666555555555543
No 282
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.54 E-value=7.7e+02 Score=25.88 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 002807 469 LLVQTEELLQKEATEDAQFRS 489 (878)
Q Consensus 469 ~L~e~~~~L~~E~~eD~~~R~ 489 (878)
.+.+|+..|+++..+.+.++.
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~ 156 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLK 156 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 283
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.38 E-value=1.1e+03 Score=27.54 Aligned_cols=55 Identities=9% Similarity=0.264 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002807 669 YKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQ 726 (878)
Q Consensus 669 l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~ 726 (878)
++++..-...-+|+-.+|.++..-. .+.+.++..+-++++.+-..+.++|.++|.
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw---~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVW---RGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333345555555554432 233444444545555555556666655554
No 284
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=26.37 E-value=1e+02 Score=21.33 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHH
Q 002807 131 VLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAG 166 (878)
Q Consensus 131 VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG 166 (878)
.+|++|.+|. .| .....+.+.|+.+|++||-
T Consensus 3 a~~~lg~~~~-~G----~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYE-YG----LGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHH-cC----CCCCcCHHHHHHHHHHHHH
Confidence 4677887773 12 1344578899999999984
No 285
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.27 E-value=9.5e+02 Score=26.84 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=15.9
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 444 QISGGPAALEAELQQLRDLRRVNQELLVQTE 474 (878)
Q Consensus 444 ~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~ 474 (878)
+.+|..+.++..+..+.+-.+..+-.|++..
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344556666666555554444444444433
No 286
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.22 E-value=1e+03 Score=27.34 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC
Q 002807 456 LQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT 493 (878)
Q Consensus 456 l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~ 493 (878)
.........-..+.|.++++.|++-+..=+.||.++|-
T Consensus 166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344445556777778888888777777788888875
No 287
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.21 E-value=7.9e+02 Score=25.93 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002807 662 RASREKCYKQIQAAIAKYREIKENINEG 689 (878)
Q Consensus 662 ~~~re~~l~~L~~A~~~y~el~~nl~eG 689 (878)
+++-+++++.+..+++.|.....-+-.|
T Consensus 126 r~e~~~ml~evK~~~E~y~k~~k~~~~g 153 (230)
T PF03904_consen 126 REENKSMLQEVKQSHEKYQKRQKSMYKG 153 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666555544444
No 288
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=26.20 E-value=1.9e+02 Score=20.47 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHH-HHHhhCCCCChHhHHHHHHHHHHHHH
Q 002807 131 VLFNLGAVYS-QIGLSCDRTTVEGRRLASHSFIAAAG 166 (878)
Q Consensus 131 VLfNiaal~s-~~A~~~~r~~~~~lK~A~~~fq~AAG 166 (878)
..|++|.++. ..|. .....+.+.|+.+|++||-
T Consensus 3 A~~~lg~~~~~~~g~---~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 3 AQYNLGMYYMYYNGK---GGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHTS---TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcc---CCccccccchHHHHHHHHH
Confidence 4678883222 1222 2234579999999999984
No 289
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.02 E-value=1.1e+03 Score=27.71 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=21.2
Q ss_pred hHhhhh--hhchHHHHHHHHHHHHHHHHHhcCCC
Q 002807 274 SLELHE--KEEIAEEIARLKSGISALTEAKKSPK 305 (878)
Q Consensus 274 a~~~~e--~~~~GeaIa~L~~A~~~l~~a~~~~k 305 (878)
|+.+.| -++||..+-..-...++|.+-.+..|
T Consensus 58 ALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k 91 (470)
T KOG1087|consen 58 ALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPK 91 (470)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 334444 26788888777777778887666654
No 290
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=26.01 E-value=3e+02 Score=26.62 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCC-hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 002807 579 LETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS-YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIF- 656 (878)
Q Consensus 579 l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~-~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~- 656 (878)
+.=|+..++.+++..++.+ ++...+- .+.|-+.....|+-+.+.+..++..+ .|+....+++..|
T Consensus 9 ~~~L~~~~~~fl~~W~~~i--------~i~~~D~~k~~i~~NG~~~~~lvie~l~~~~~~~-----~i~~la~KiAkER~ 75 (133)
T PF09385_consen 9 VNFLEEHKENFLSNWKKKI--------LISEDDPFKEEIHQNGEAMFELVIEYLREEISLE-----EIQQLAYKIAKERA 75 (133)
T ss_dssp HHHHHHCHHHHHHHHHCCS-----------TT-TTHHHHHHHHHHHHHHHHHHHTTSS-GG-----GGHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhce--------eeCCCCchHHHHHHHHHHHHHHHHHHHHhCCcHH-----HHHHHHHHHHHHHh
Confidence 3445667888888888764 2222222 25566667777777777666655444 3333333333222
Q ss_pred ----hch----hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002807 657 ----NLE----DYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQ 697 (878)
Q Consensus 657 ----~~~----~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~ 697 (878)
+.. ...-.|..+++-+..+--.+.|++-=+++-..||+.|.
T Consensus 76 ~A~iNIgeFVYN~NlGR~~~~~~l~~~~~~~~el~~~i~~IN~~FDkfi 124 (133)
T PF09385_consen 76 EANINIGEFVYNVNLGRSELLKYLFKLGIDWNELQPIIEKINYFFDKFI 124 (133)
T ss_dssp HHT--THHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 24567888888888777788888888888888888874
No 291
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.99 E-value=6.3e+02 Score=24.73 Aligned_cols=48 Identities=6% Similarity=0.203 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Q 002807 684 ENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAG 731 (878)
Q Consensus 684 ~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~~~~ 731 (878)
..+.++++||++=.+.+.+...++..-+..-+.+.+++...|+.++..
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348889999998888888888888777777777777777777665544
No 292
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=25.98 E-value=8e+02 Score=25.89 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHhhccCCchhH----HhhcCCChHHHHHHHHhhhhHH
Q 002807 559 MSLDATEDAIVGALKQ---SLRQLETLGAQRAGLEDM----LKEMKRKDDILPK----LMTSAGSYEDLFRKEISKYDHI 627 (878)
Q Consensus 559 ~~l~~~~~~~v~~Lr~---ll~~l~~l~~qR~~l~~~----lk~~~~~ddI~~k----Li~~~~~~e~lf~~eL~kf~~l 627 (878)
..|-+..+.....+.. +++++..+..+|..++.+ |+..+....-... .......--.-+..++......
T Consensus 1 ~~L~d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~ 80 (251)
T cd07653 1 TELWDQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQ 80 (251)
T ss_pred CcchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------
Q 002807 628 CEEIAQNIEAQEQLLMQIQAQNEEFSAIFNL-----EDYRASREKCYKQIQAAIAKYREIKENINEGLKFY--------- 693 (878)
Q Consensus 628 ~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~-----~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY--------- 693 (878)
-..+.+++ ...+...|.....+....++. ....+.+...+..+..+-..|............-|
T Consensus 81 H~~~a~~l--~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~ 158 (251)
T cd07653 81 HELIAENL--NSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNL 158 (251)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002807 694 --VTLQDAITNIKQQCSDFVMTRNIQCREMIE 723 (878)
Q Consensus 694 --~~L~~~l~~l~~~v~df~~~R~~E~~~L~~ 723 (878)
.++...-.++.....++..+|+.-...+..
T Consensus 159 s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~ 190 (251)
T cd07653 159 TKADVEKAKANANLKTQAAEEAKNEYAAQLQK 190 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 293
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=25.84 E-value=28 Score=19.26 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 002807 157 ASHSFIAAAGAF 168 (878)
Q Consensus 157 A~~~fq~AAG~F 168 (878)
|.+++++||-||
T Consensus 1 A~~~y~~Aa~~y 12 (12)
T PF02071_consen 1 AIKCYEKAAECY 12 (12)
T ss_pred CcHHHHHHHhhC
Confidence 456778887765
No 294
>PRK11519 tyrosine kinase; Provisional
Probab=25.77 E-value=9.1e+02 Score=30.14 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002807 461 DLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRD 534 (878)
Q Consensus 461 ~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~ 534 (878)
+...=..+.|.+++..|+.-+..=++||.++|.- ..+. -.....+.+..++..+.+....-..+..++.+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v---d~~~-ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~ 336 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV---DLPL-EAKAVLDSMVNIDAQLNELTFKEAEISKLYTK 336 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344456677777778888777778899999862 1112 23344555566665555544433344444443
No 295
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=25.63 E-value=6e+02 Score=26.63 Aligned_cols=180 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchH
Q 002807 423 ILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSST 502 (878)
Q Consensus 423 l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~ 502 (878)
+..|.++..+++++..-...-...+-+.. +.+.+.|..+...|..- +|.-|...=++.-..+
T Consensus 18 vriLsqPL~ps~~wr~~~~~~~~~~~l~~------------k~v~~vL~klN~~lkqH------~r~vys~Qa~~hVaeQ 79 (213)
T PF13093_consen 18 VRILSQPLAPSRDWRSINSEPASEDPLSD------------KVVQDVLQKLNARLKQH------NRRVYSPQAIRHVAEQ 79 (213)
T ss_pred HHHcCCCCCCCHHHHHhcccccccCCCCH------------HHHHHHHHHHHHHHHHH------HHHhCCHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcChhhhHhhCCCCCcCc--CCCCcchHHHHHHHHHHHHHHH
Q 002807 503 LTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPTLARPI--MSLDATEDAIVGALKQSLRQLE 580 (878)
Q Consensus 503 l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~~~~l~~~lP~~~~p~--~~l~~~~~~~v~~Lr~ll~~l~ 580 (878)
..+-++.++..-.+.+........ -.+.....-|+..++.+.||..- +. .+-.+...+...+...+..+|-
T Consensus 80 I~~ly~~~~~~~~~~~~~~~~~~~------~~~l~~~~dls~~~~I~~LP~~w-~~~~~~~~~~~~e~~~rY~~l~~~L~ 152 (213)
T PF13093_consen 80 IDKLYWQKAERVNDQLDKIEYGIE------PIILPDFADLSNPENIEELPESW-PRQQEQDEDASPEEAERYAELRERLI 152 (213)
T ss_pred HHHHHHHHHHHhhccccccccccc------hhhcccccccccHhHHHHCCchh-hhcccccccCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh-----------hccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHH
Q 002807 581 TLGAQRAGLEDMLKEM-----------KRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEI 631 (878)
Q Consensus 581 ~l~~qR~~l~~~lk~~-----------~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I 631 (878)
++-++|..+...+... ...+.|-+-|++..| -...||.+|.-+..+|
T Consensus 153 ~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~~IQ~NLvtr~g----~l~~El~rmR~LlarV 210 (213)
T PF13093_consen 153 ELSEQRQYLQQRLEYLRRLRSLLEPFDSPQENIQPNLVTRDG----ELEAELERMRMLLARV 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccCCCCc----hHHHHHHHHHHHHHHH
No 296
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=25.44 E-value=2.3e+02 Score=24.91 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 661 YRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVM 712 (878)
Q Consensus 661 ~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~ 712 (878)
..++-+.++++|.++-....+......+|++.|......|..-.+++.....
T Consensus 15 ~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~~l~~ 66 (81)
T COG1722 15 ALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLLE 66 (81)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777776677777777778888777766666666666655443
No 297
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=25.44 E-value=6.6e+02 Score=24.77 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 670 KQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQC 707 (878)
Q Consensus 670 ~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v 707 (878)
..+......+.++...+......+..+.+....|...+
T Consensus 139 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (213)
T cd00176 139 ESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEG 176 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 44555555566666666666556666555555555444
No 298
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=25.31 E-value=1.3e+03 Score=28.14 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=55.4
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHH
Q 002807 445 ISGGPAALEAELQQLRDLRRVNQELLVQTEE---LLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQA 521 (878)
Q Consensus 445 ~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~---~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A 521 (878)
..+|++++...+..-..+.+.+.+....+++ .|-.+...-++.-.- +..--.+.+..-...+-.++..+...+ ..
T Consensus 192 ~~~~w~sv~~aL~~~~~~ad~da~AEk~aRn~~e~L~~i~n~g~~~eTa-q~nPlI~~t~~ta~kLs~qldnv~~ev-~~ 269 (657)
T KOG1854|consen 192 KEAGWNSVTTALKLPESAADKDATAEKSARNAQEKLVTIANLGETGETA-QANPLITATKDTAHKLSNQLDNVKREV-SS 269 (657)
T ss_pred hhccchhHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHhcccchhh-hcccchHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4568888888777766666644444443333 333332211110000 011112233333445666666666553 34
Q ss_pred HhhHHHHHHHHHHhHHHHhhcChhhhHhhCCCCC
Q 002807 522 AESDARIERSVRDHSALMSILDRRPIESALPTLA 555 (878)
Q Consensus 522 ~~sD~~v~~k~~~~~~~l~~L~~~~l~~~lP~~~ 555 (878)
.++-..|..+|.+..+...-.=..+|++.+|..+
T Consensus 270 ~~se~~vv~ky~~~ve~ar~~F~~EL~si~p~l~ 303 (657)
T KOG1854|consen 270 SNSEAEVVGKYSELVEKARHQFEQELESILPGLS 303 (657)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4555566666666544433222578999999654
No 299
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=25.15 E-value=8.1e+02 Score=28.60 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhc
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTS 609 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~ 609 (878)
...++|+.++++|+++..-|.++-.++-+.. .-|...|+..
T Consensus 304 ~~~~el~~~l~~V~~~~~vr~~ltaemAd~~--~~ik~llvrA 344 (431)
T PF14782_consen 304 DEMEELREILEKVDELNEVRQRLTAEMADHS--NLIKSLLVRA 344 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHh
Confidence 4688999999999999999999998887753 3355555554
No 300
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=24.71 E-value=25 Score=38.64 Aligned_cols=9 Identities=67% Similarity=1.686 Sum_probs=0.5
Q ss_pred CCCCCCCCC
Q 002807 793 HPPPPYGNP 801 (878)
Q Consensus 793 ~~~~~~~~~ 801 (878)
++||||+.+
T Consensus 55 ~~pp~y~~~ 63 (489)
T PF07415_consen 55 HNPPPYDDP 63 (489)
T ss_dssp -----S---
T ss_pred CCCCCCCCC
Confidence 344445443
No 301
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=24.66 E-value=4.3e+02 Score=23.46 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002807 630 EIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITN 702 (878)
Q Consensus 630 ~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~ 702 (878)
.|+.-+.....||.+|...++. | +=..|..-+...+||-.||..-..-|.+|.....+
T Consensus 17 qVQ~iLDqNR~LI~eINqNHeS----r-----------~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~sFs~ 74 (87)
T PF07011_consen 17 QVQSILDQNRLLINEINQNHES----R-----------IPDNLSRNVGLIRELNGNISRVVDLYSDLSSSFSK 74 (87)
T ss_pred HHHHHHHHhHHHHHHHhhcccc----c-----------CCchhhHhHHHHHHHHhhHHHHHHHHHHHhHHHHH
Confidence 4444445557888888765532 1 11234444556678889999999999998655443
No 302
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=24.54 E-value=1.5e+03 Score=28.62 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002807 626 HICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNL-EDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIK 704 (878)
Q Consensus 626 ~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~-~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~ 704 (878)
.+-..+.....+-.++++.+....+.+...+.+ +.....|+-+..+|..--+...++..+++...++-..+.+.+.+..
T Consensus 395 ~~p~~~~~~C~r~~~~~~~~~~~~~~~~~n~~w~~rl~e~R~~va~Ql~~~s~~l~~~a~e~~~~~~~~~~~e~~i~~~L 474 (764)
T TIGR02865 395 KLPDEFERKCIKRKELINTTEDILNNYIINEMWRKRLEEGRRLVAEQLKGVAESVEDIAKEINLEIVFHQLLEEKIIRAL 474 (764)
T ss_pred hhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 445555556666778888888777766554443 2346678888899999999999999999999999999988777766
Q ss_pred HHH
Q 002807 705 QQC 707 (878)
Q Consensus 705 ~~v 707 (878)
++.
T Consensus 475 ~~~ 477 (764)
T TIGR02865 475 NKN 477 (764)
T ss_pred HHC
Confidence 654
No 303
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=24.51 E-value=1e+03 Score=26.73 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
.+.++..+.+.+.|+......+.++.+|+..
T Consensus 253 ~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~ 283 (356)
T cd09237 253 PEELEKFKPLQNRLEATIFKQSSLINELKIE 283 (356)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778999999999999999999874
No 304
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=24.51 E-value=8.3e+02 Score=25.57 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 568 IVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 568 ~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
.-.+|+.+...++.|-..|..+-..+-+.
T Consensus 24 Le~~Lk~l~~~~e~lv~~r~ela~~~~~f 52 (224)
T cd07623 24 LDQQLRKLHASVESLVNHRKELALNTGSF 52 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888888888887766544
No 305
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=24.44 E-value=1.1e+03 Score=26.85 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKR 598 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~ 598 (878)
...+++||-++++=+.+...|.-+...|+.+..
T Consensus 230 lqdLRdlK~ll~~k~~ld~hk~lV~~~L~~~l~ 262 (361)
T PF05427_consen 230 LQDLRDLKTLLNDKDELDQHKHLVCRRLKGKLS 262 (361)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHhhhhhh
Confidence 456777777888878888888888888888654
No 306
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=24.36 E-value=1.1e+02 Score=32.77 Aligned_cols=7 Identities=29% Similarity=0.435 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 002807 720 EMIEDVQ 726 (878)
Q Consensus 720 ~L~~~l~ 726 (878)
+|+.+|+
T Consensus 66 eLe~ql~ 72 (247)
T PF09849_consen 66 ELEAQLQ 72 (247)
T ss_pred HHHHHHH
Confidence 4444443
No 307
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.28 E-value=8.8e+02 Score=25.76 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMK 597 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~ 597 (878)
..-.+|+++...++.|-.+|..+...+-+..
T Consensus 33 ~Le~~Lk~l~k~~~~lv~~rkela~~~~efa 63 (234)
T cd07664 33 NLDQQLRKLHASVESLVCHRKELSANTAAFA 63 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888999999999998887766543
No 308
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.27 E-value=1.2e+03 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 569 VGALKQSLRQLETLGAQRAGLEDMLKE 595 (878)
Q Consensus 569 v~~Lr~ll~~l~~l~~qR~~l~~~lk~ 595 (878)
+..+...++.|+.=+.+|...+..+-.
T Consensus 96 I~~~~~~l~~l~~q~r~qr~~La~~L~ 122 (420)
T COG4942 96 IADLNARLNALEVQEREQRRRLAEQLA 122 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555444444444444333
No 309
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.21 E-value=3.6e+02 Score=30.96 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCC---C----c--h--hHHHHHHHHHHHHHHHHH
Q 002807 257 HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSP---K----G--A--AAQLLDAISKLEANLNRN 325 (878)
Q Consensus 257 ~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~---k----~--~--~~~~~~~~~~l~~~i~~~ 325 (878)
+..+...|-.|.+..-+|+...|.+..|++++.|+.+..+|.+..... + + . +-.+...++.-...|+..
T Consensus 12 ~a~Ir~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~R 91 (560)
T KOG2709|consen 12 TAQIRAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHR 91 (560)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888899999999999999999999999998843221 1 0 1 123445666667788888
Q ss_pred HHHHHh------cccccccccCCC
Q 002807 326 LDRAVK------ENDRVYLMRVPS 343 (878)
Q Consensus 326 l~~a~k------dNd~IY~e~VP~ 343 (878)
|+-.+| ||+. +.+|.
T Consensus 92 l~vL~kqkqsid~~~~---q~tpk 112 (560)
T KOG2709|consen 92 LNVLKKQKQSIDEGPK---QPTPK 112 (560)
T ss_pred HHHHHhhhcccccCcc---ccCch
Confidence 888888 6663 55554
No 310
>PHA03246 large tegument protein UL36; Provisional
Probab=24.21 E-value=2.3e+03 Score=30.68 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002807 565 EDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKR---KDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQL 641 (878)
Q Consensus 565 ~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~---~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~L 641 (878)
.+++|.+..-||.++++-++-=-+-++-|++..+ ....+. .+.+.| .-..|.+.|.+...+..++++-...=+..
T Consensus 1719 a~DIVTQaALLL~~vEet~ELDvqAVeWL~hAr~IIDSHpLT~-rIDg~G-Pm~~yaeRIDaL~~LR~rLd~Lr~~L~~A 1796 (3095)
T PHA03246 1719 ANDIVTQAALLLTKVEETKELDTQTVEWLKHAESVIDSHDLTV-RIDESG-PMTIYAERIDALVRLENRLAELKSELALA 1796 (3095)
T ss_pred HHHHHHHHHHHHHHhhhccccCHHHHHHHHHHHHHhccCcccc-ccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888777654555555555432 233332 222222 35678888888877877776543311222
Q ss_pred HHHHHHHHHHHHHhhh
Q 002807 642 LMQIQAQNEEFSAIFN 657 (878)
Q Consensus 642 l~~I~~~n~~f~~~~~ 657 (878)
--.-.+.|..|...++
T Consensus 1797 EaaWDeaW~~F~r~~~ 1812 (3095)
T PHA03246 1797 EVAWDDTWSTFIHDKD 1812 (3095)
T ss_pred HhhHHHHHHHHhhccC
Confidence 2344566788876553
No 311
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.92 E-value=1.6e+02 Score=30.21 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 002807 803 PLHPYQP 809 (878)
Q Consensus 803 ~~~~~~~ 809 (878)
+||||.-
T Consensus 57 ~phPYMW 63 (189)
T PF07777_consen 57 QPHPYMW 63 (189)
T ss_pred CCCCccc
Confidence 3455443
No 312
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.79 E-value=1.4e+03 Score=28.13 Aligned_cols=211 Identities=14% Similarity=0.188 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhH-------HHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 456 LQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLT-------KNLQDRLNRFAGNLKQAAESDARI 528 (878)
Q Consensus 456 l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~-------~~l~~~l~k~~~~L~~A~~sD~~v 528 (878)
|.....-+...++.|..+...|+.....=+.+|.--|..- |+..-+ ..|.+.++++++ -...+
T Consensus 192 La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~---p~~~~~~~we~Er~~L~~tVq~L~e-------dR~~L 261 (739)
T PF07111_consen 192 LAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQV---PPEVHSQAWEPEREELLETVQHLQE-------DRDAL 261 (739)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhC---CcccccHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 3333444455677888888888888888888999888632 222112 233333333332 11122
Q ss_pred HHHHHH---hHHH-HhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 002807 529 ERSVRD---HSAL-MSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDI 602 (878)
Q Consensus 529 ~~k~~~---~~~~-l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI 602 (878)
....+- -... =.+|+ ..+|...++.++ |+ - .+..++.+.+|+.|.+ .++.-+-+.. ..++
T Consensus 262 ~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d-~L---e---~e~~~K~q~LL~~WRE------KVFaLmVQLk-aQel 327 (739)
T PF07111_consen 262 QATAELLQVRVQSLTDILTLQEEELCRKVQPSD-PL---E---PEFSRKCQQLLSRWRE------KVFALMVQLK-AQEL 327 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CC---C---chhHHHHHHHHHHHHH------HHHHHHHHhh-HHHH
Confidence 211111 1111 12334 677877776554 22 1 2344566666666633 2222211110 0000
Q ss_pred hhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 603 LPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREI 682 (878)
Q Consensus 603 ~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el 682 (878)
...+....-..+...+...+...-..|.-|.+.|++.-+++.-.+- .-+.....|..|.+...-+
T Consensus 328 ---------eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv------~sktLQ~ELsrAqea~~~l 392 (739)
T PF07111_consen 328 ---------EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERV------GSKTLQAELSRAQEARRRL 392 (739)
T ss_pred ---------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHH
Confidence 0111122222244555555555555566666677665555532221 1112233455555555555
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 002807 683 KENINEGLKFYVTLQDAITNIKQ 705 (878)
Q Consensus 683 ~~nl~eG~~FY~~L~~~l~~l~~ 705 (878)
...+..+..-+.-+.+.++.++.
T Consensus 393 qqq~~~aee~Lk~v~eav~S~q~ 415 (739)
T PF07111_consen 393 QQQTASAEEQLKLVSEAVSSSQQ 415 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444443
No 313
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=23.55 E-value=6e+02 Score=23.62 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
...+.+...++.++..+...|..++..+...
T Consensus 40 ~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 40 EELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3556677779999999999999999887665
No 314
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.55 E-value=1.5e+03 Score=28.30 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=17.6
Q ss_pred HhhHHHHHHHHHHhHHHHhhcC
Q 002807 522 AESDARIERSVRDHSALMSILD 543 (878)
Q Consensus 522 ~~sD~~v~~k~~~~~~~l~~L~ 543 (878)
...|..+.+.+.+....+.+|-
T Consensus 352 eq~DsE~qRLitEvE~cislLP 373 (861)
T PF15254_consen 352 EQEDSEVQRLITEVEACISLLP 373 (861)
T ss_pred ccchHHHHHHHHHHHHHHHhhh
Confidence 4578889999988888887765
No 315
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=23.46 E-value=1.9e+02 Score=32.88 Aligned_cols=43 Identities=21% Similarity=0.480 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002807 682 IKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIED 724 (878)
Q Consensus 682 l~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~ 724 (878)
|.+.-+++..|-.+|..++..++++|.+|-..--.+.+.|++.
T Consensus 281 lsdrak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q~d~lid~ 323 (699)
T KOG4367|consen 281 LSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDA 323 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544444444444433
No 316
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.46 E-value=1.8e+03 Score=29.12 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 679 YREIKENINEGLKFYVTLQDAITNIKQQCSD 709 (878)
Q Consensus 679 y~el~~nl~eG~~FY~~L~~~l~~l~~~v~d 709 (878)
+.++..++.+-.+=-..|...+.++++++..
T Consensus 558 ~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE 588 (1293)
T KOG0996|consen 558 LKEKEKELPKLRKEERNLKSQLNKLRQRVEE 588 (1293)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333444444444443
No 317
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=23.39 E-value=2e+02 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002807 689 GLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDV 725 (878)
Q Consensus 689 G~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l 725 (878)
+-.||.++...+..|+..+.+..++|..|...++.++
T Consensus 23 d~dFY~~v~~~I~eLe~~~~~~~~~~D~e~~~~~~~~ 59 (223)
T COG1711 23 DEDFYRDVRSFIKELEDEAGRAEEARDIEKYLLTDRI 59 (223)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHH
Confidence 4468888888888888888888888888877665533
No 318
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=23.25 E-value=5.3e+02 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 630 EIAQNIEAQEQLLMQIQAQNEEFSA 654 (878)
Q Consensus 630 ~I~~~~~~Q~~Ll~~I~~~n~~f~~ 654 (878)
.|+..+..|..++..|...|+....
T Consensus 12 d~~~~l~~Q~~~l~~ln~tn~~L~~ 36 (88)
T PF10241_consen 12 DLDEILALQAQTLGRLNKTNEELLN 36 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999888877654
No 319
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=23.18 E-value=1.3e+03 Score=27.51 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHH
Q 002807 431 TLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDR 510 (878)
Q Consensus 431 ~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~ 510 (878)
.||+..+.++..-+...+-.+=++.-...-.|+-..+.-.=..+..+..|+++-+ -.-.+++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~s~~EkEvE~~F~~lsL~f~~D~~TLe~R~~~~eR~Rd----------------laEeNl~kE 232 (538)
T PF05781_consen 169 SLPDTMLKKLNLRQSLPGSASEKEVEAEFLRLSLGFKCDRFTLEKRLKLEERSRD----------------LAEENLKKE 232 (538)
T ss_pred CCchhhhhhhhhhcCCCCCCcHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 4888888888777666555433333333344443333333344455555543221 223478889
Q ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHhHHHHhhcC
Q 002807 511 LNRFAGNLKQAAES---DARIERSVRDHSALMSILD 543 (878)
Q Consensus 511 l~k~~~~L~~A~~s---D~~v~~k~~~~~~~l~~L~ 543 (878)
|..+++.|+.-..- |...++.|+.....|.+|.
T Consensus 233 i~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~ 268 (538)
T PF05781_consen 233 IENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLH 268 (538)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999888755433 7777877877777777776
No 320
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=23.17 E-value=8.7e+02 Score=25.34 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002807 662 RASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIED 724 (878)
Q Consensus 662 ~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~ 724 (878)
..+|..+-+.+..-++.|..-...+. ..+.+.++.+...+.+|-..|+.++.+-+..
T Consensus 59 d~~RK~ikk~~~~P~~~Fe~~~K~l~------~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~ 115 (215)
T PF07083_consen 59 DDKRKEIKKEYSKPIKEFEAKIKELI------APIDEASDKIDEQIKEFEEKEKEEKREKIKE 115 (215)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665544433 4456677777888888888888777665543
No 321
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.12 E-value=9.3e+02 Score=25.68 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002807 574 QSLRQLETLGAQRAGLEDM 592 (878)
Q Consensus 574 ~ll~~l~~l~~qR~~l~~~ 592 (878)
.+++++.....+|..++++
T Consensus 19 ~~~~el~~f~keRa~IEe~ 37 (261)
T cd07648 19 IAVKELADFLRERATIEET 37 (261)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788888888899888876
No 322
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.02 E-value=1.1e+03 Score=26.38 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q 002807 502 TLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHS 536 (878)
Q Consensus 502 ~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~ 536 (878)
+-|..+..++..++..|.+|..-...++.++....
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 34566666777777777666665555665555543
No 323
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=22.93 E-value=1.3e+02 Score=24.31 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=22.1
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
|.+++..|..+...+++.+||..|..|.+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 456667777777778888888888777664
No 324
>PF13514 AAA_27: AAA domain
Probab=22.92 E-value=1.8e+03 Score=29.06 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhCC---CCCCCCc--hHhHHHHHHHHHHHHHHHHHHHhhHH
Q 002807 464 RVNQELLVQTEELLQKEATEDAQFRSQFGT---RWTRPQS--STLTKNLQDRLNRFAGNLKQAAESDA 526 (878)
Q Consensus 464 ~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~---~W~r~~S--~~l~~~l~~~l~k~~~~L~~A~~sD~ 526 (878)
......+.+.+..+..-+..-+..+.+++. .+..++. ........+.+..+...+.+......
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 750 (1111)
T PF13514_consen 683 QQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRR 750 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544444455554442 1112222 22222355566666665555554443
No 325
>PF00103 Hormone_1: Somatotropin hormone family; InterPro: IPR001400 Somatotropin is a hormone that plays an important role in growth control. It belongs to a family that includes choriomammotropin (lactogen), its placental analogue; prolactin, which promotes lactation in the mammary gland, and placental prolactin-related proteins; proliferin and proliferin related protein; and somatolactin from various fish [, , , ]. The 3D structure of bovine somatotropin has been predicted using a combination of heuristics and energy minimisation [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3HHR_A 1HUW_A 1KF9_D 1HGU_A 1HWG_A 1AXI_A 1A22_A 1BP3_A 1HWH_A 1F6F_A ....
Probab=22.90 E-value=5.9e+02 Score=26.54 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 002807 502 TLTKNLQDRLNRFAGNLKQAA 522 (878)
Q Consensus 502 ~l~~~l~~~l~k~~~~L~~A~ 522 (878)
.+-.-||.+..|+..+|+-.+
T Consensus 185 ~Ll~CfrrD~hKVetyLkvLk 205 (214)
T PF00103_consen 185 NLLHCFRRDSHKVETYLKVLK 205 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHh
Confidence 356678888888888887443
No 326
>PF14944 TCRP1: Tongue Cancer Chemotherapy Resistant Protein 1
Probab=22.75 E-value=1.7e+02 Score=28.58 Aligned_cols=14 Identities=43% Similarity=1.044 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCCCCC
Q 002807 861 YAAPAPYTYPNQSSYY 876 (878)
Q Consensus 861 ~~~~~~~~~~~~~~~~ 876 (878)
|+++.+|+ +||.||
T Consensus 91 YPQQn~Ya--qQGaYY 104 (195)
T PF14944_consen 91 YPQQNPYA--QQGAYY 104 (195)
T ss_pred CcccCchh--hcCcee
Confidence 33344444 444444
No 327
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=22.73 E-value=9.6e+02 Score=25.69 Aligned_cols=163 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred cchHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHhhccCCchhHHhhcCCCh---HHHHHHHHhhhhHHHHHHH
Q 002807 563 ATEDAIVGALKQ---SLRQLETLGAQRAGLEDM----LKEMKRKDDILPKLMTSAGSY---EDLFRKEISKYDHICEEIA 632 (878)
Q Consensus 563 ~~~~~~v~~Lr~---ll~~l~~l~~qR~~l~~~----lk~~~~~ddI~~kLi~~~~~~---e~lf~~eL~kf~~l~~~I~ 632 (878)
++.+..+.+++. +|++|..+..+|..++.+ |+..+.+-.-...=-...|++ -..+..+.+.....-..|.
T Consensus 5 ~~y~~~~kr~~~G~~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~ 84 (258)
T cd07655 5 GNYKRTVKRIEDGHKLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLSIR 84 (258)
T ss_pred CCchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHhhhchhH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--
Q 002807 633 QNIEAQEQLLMQIQAQNEE---------FSAIFNLEDY----RASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQ-- 697 (878)
Q Consensus 633 ~~~~~Q~~Ll~~I~~~n~~---------f~~~~~~~~~----~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~-- 697 (878)
+++ +..+...|.....+ |...+..... .+.....++.+..|-..|...+...+....-|+.-.
T Consensus 85 ~~L--~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d 162 (258)
T cd07655 85 DKL--LNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSD 162 (258)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q ss_pred -----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002807 698 -----DAITNIKQQCSDFVMTRNIQCREMIEDVQR 727 (878)
Q Consensus 698 -----~~l~~l~~~v~df~~~R~~E~~~L~~~l~~ 727 (878)
..+.+++.+...-...-..-+++....|+.
T Consensus 163 ~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~ 197 (258)
T cd07655 163 TSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALED 197 (258)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 328
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=22.68 E-value=6.9e+02 Score=26.82 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.3
Q ss_pred HHHHHH
Q 002807 640 QLLMQI 645 (878)
Q Consensus 640 ~Ll~~I 645 (878)
+||+.|
T Consensus 7 qLI~~l 12 (247)
T PF09849_consen 7 QLIDDL 12 (247)
T ss_pred HHHHHH
Confidence 344333
No 329
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.56 E-value=1.5e+03 Score=28.01 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHHHHHH
Q 002807 626 HICEEIAQNIEAQEQLLMQIQAQNEEFSAIFN----LEDYRASREKCYKQIQAAIA 677 (878)
Q Consensus 626 ~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~----~~~~~~~re~~l~~L~~A~~ 677 (878)
..-.+|...+..=+.++++|.+.|.+...... -++...+|++++.+|..-++
T Consensus 156 ~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~v~ 211 (676)
T PRK05683 156 NINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNELVG 211 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhhcC
Confidence 34446666666668899999999999876432 24678999999988865443
No 330
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.55 E-value=1.6e+03 Score=28.14 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHH
Q 002807 510 RLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLG 583 (878)
Q Consensus 510 ~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~ 583 (878)
+|..+++..+.-.+....+.+||++..+.=+.|. .+.+...+ ....|. ++..+.+...+|+.+-++|+.|+
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l-~~~~P~--LS~AEr~~~~EL~~~~~~l~~l~ 652 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL-NSQLPV--LSEAEREFKKELERMKDQLQDLK 652 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555444443333 12222222 112222 12334555666666655665554
No 331
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=22.55 E-value=5.3e+02 Score=24.44 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002807 263 ALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKG-AAAQLLDAISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 263 ~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~-~~~~~~~~~~~l~~~i~~~l~~a~kdNd~ 335 (878)
.|=.++.....|..+.+.+.+.+.-..+..|...+.+-...-.. ....+-+.+..|.+-+.+.|.++...||.
T Consensus 27 Lydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~~L~~An~~~d~ 100 (124)
T TIGR00208 27 LYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYRRLVQANIKNDT 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 44455666677777777777777666677777766544332211 12356667788888888888888777775
No 332
>PRK01156 chromosome segregation protein; Provisional
Probab=22.47 E-value=1.7e+03 Score=28.45 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 448 GPAALEAELQQLRDLRRVNQELLVQTE 474 (878)
Q Consensus 448 g~~~l~~~l~~l~~l~~~~~~~L~e~~ 474 (878)
|+..+....+.+.+........+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ei~~le 186 (895)
T PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNID 186 (895)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444444444443
No 333
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=22.44 E-value=2.8e+02 Score=32.19 Aligned_cols=82 Identities=10% Similarity=0.214 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 637 AQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYR----EIKENINEGLKFYVTLQDAITNIKQQCSDFVM 712 (878)
Q Consensus 637 ~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~----el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~ 712 (878)
.++++|.+|+... ...+..++.+++++.+++.|+.-+..|. ||+.++.++..==..|..-|.+|+..+..-.+
T Consensus 245 aEEriLKrvRRKI---rNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 245 AEERILKRVRRKI---RNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred HHHHHHHHHHHHH---HhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc
Confidence 4677777776532 2233345667888899999999998885 89999999999889999999999887765444
Q ss_pred hhHHHHHHHH
Q 002807 713 TRNIQCREMI 722 (878)
Q Consensus 713 ~R~~E~~~L~ 722 (878)
+..+.....
T Consensus 322 -~s~qt~tC~ 330 (472)
T KOG0709|consen 322 -KSTQTSTCL 330 (472)
T ss_pred -chhccchhH
Confidence 444444333
No 334
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=22.30 E-value=7.6e+02 Score=27.28 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002807 566 DAIVGALKQSLRQLETLGAQRAG 588 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~ 588 (878)
+..+..+++.++.|.....+|+.
T Consensus 181 d~S~k~ik~~F~~l~~cL~dREv 203 (302)
T PF07139_consen 181 DSSIKKIKQTFAELQSCLMDREV 203 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777776666654
No 335
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=22.13 E-value=3.9e+02 Score=26.92 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 002807 688 EGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQM 729 (878)
Q Consensus 688 eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~~ 729 (878)
+-.-||.+|.+.=..=-......-.+=+.|..+|+-+|+..+
T Consensus 131 QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl 172 (179)
T PF14723_consen 131 QQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRL 172 (179)
T ss_pred hHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477766554333333333444555567777777776543
No 336
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=21.99 E-value=1.9e+02 Score=20.57 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 269 ACYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 269 A~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
|+...|..+...+++.+||..++.|..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455677777888899999999887643
No 337
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=21.95 E-value=1.4e+03 Score=28.27 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 002807 627 ICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIA 677 (878)
Q Consensus 627 l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~ 677 (878)
.-.+|...+..=+.++++|.+.|.+........+...+|.+++++|..-++
T Consensus 157 ~n~~I~~~V~~iN~l~~qIA~LN~qI~~~~~~ndLlDqRD~ll~eLS~~v~ 207 (649)
T PRK12715 157 STLQVTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQLSGYTD 207 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHhHHHHHHHHHHHHhhcC
Confidence 344566666666788888888888865322234678899999888865443
No 338
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.90 E-value=1.1e+03 Score=26.15 Aligned_cols=136 Identities=16% Similarity=0.228 Sum_probs=73.8
Q ss_pred hhhccCChHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhH
Q 002807 372 MFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAA 451 (878)
Q Consensus 372 lF~~LvP~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~ 451 (878)
-|..+--++=.+|.+.|=|=+-+++....+.++..-+.|..-...+. ..++.++ ++=+.+.++.+.++.
T Consensus 118 Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~--~~~~~l~---~~~~~l~~~~~~L~~------ 186 (312)
T smart00787 118 QFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLM--KELELLN---SIKPKLRDRKDALEE------ 186 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHH------
Confidence 46666666667888888888888877777666655555544333321 2222222 233344444444432
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHH
Q 002807 452 LEAELQQLRDLRRV----NQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDAR 527 (878)
Q Consensus 452 l~~~l~~l~~l~~~----~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~ 527 (878)
.+..|.+.... ..+.|+.+++.|.+...+-+.+|.+. ..+..+++.+...++...+-=..
T Consensus 187 ---e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l-------------~e~~~~l~~l~~~I~~~~~~k~e 250 (312)
T smart00787 187 ---ELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL-------------EELEEELQELESKIEDLTNKKSE 250 (312)
T ss_pred ---HHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 34577777777777666666555442 35666666666666655554444
Q ss_pred HHHHHHH
Q 002807 528 IERSVRD 534 (878)
Q Consensus 528 v~~k~~~ 534 (878)
+...+.+
T Consensus 251 ~~~~I~~ 257 (312)
T smart00787 251 LNTEIAE 257 (312)
T ss_pred HHHHHHH
Confidence 4444433
No 339
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=21.65 E-value=8.7e+02 Score=32.05 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 002807 75 RRDLLQNYFKA 85 (878)
Q Consensus 75 ~~~~l~~Yy~~ 85 (878)
++-.|.+|-..
T Consensus 612 LrGqLReYQki 622 (1958)
T KOG0391|consen 612 LRGQLREYQKI 622 (1958)
T ss_pred HHHHHHHHHHh
Confidence 34455555443
No 340
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=21.65 E-value=6.5e+02 Score=23.33 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=23.2
Q ss_pred HhhcCCChHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002807 606 LMTSAGSYEDLFRKEISKYDHICEEIAQNIE---AQEQLLMQIQAQNEEFS 653 (878)
Q Consensus 606 Li~~~~~~e~lf~~eL~kf~~l~~~I~~~~~---~Q~~Ll~~I~~~n~~f~ 653 (878)
|+++...+-.-|.+....|......|...+. .|...|..|......+.
T Consensus 33 lltgd~~~l~~y~~~~~~~~~~l~~L~~l~~~~p~q~~~l~~l~~~~~~~~ 83 (138)
T PF05227_consen 33 LLTGDPEFLEPYQEARARLEKALAQLRQLVQDNPEQQERLDQLEELIDQWR 83 (138)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHhhhchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3444333334455554444444444443332 56666777776665543
No 341
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=1.9e+02 Score=25.15 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
-...+||+.+++++.|..+...+-+++|+-
T Consensus 11 va~~QLrafIerIERlEeEk~~i~~dikdv 40 (85)
T COG3750 11 VAAGQLRAFIERIERLEEEKKTIADDIKDV 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999888764
No 342
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.43 E-value=8.6e+02 Score=24.66 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 680 REIKENINEGLKFYVTLQDAITNIKQQC 707 (878)
Q Consensus 680 ~el~~nl~eG~~FY~~L~~~l~~l~~~v 707 (878)
..+..++.+..+-.++..+.+..+..+-
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555444
No 343
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.40 E-value=6.4e+02 Score=27.84 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhHHHHHHH-HHH--HHHH---HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002807 614 EDLFRKEISKYDHICEEIA-QNI--EAQE---QLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENIN 687 (878)
Q Consensus 614 e~lf~~eL~kf~~l~~~I~-~~~--~~Q~---~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~ 687 (878)
|.+|...++....+...-- .++ ..-. .+|..|...|..+...++.....+.-..+..++..-.+.+..+..+|.
T Consensus 185 E~~~~~a~~~d~~l~~~A~~k~V~l~sPstL~a~L~~v~~~w~~~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~ 264 (304)
T PF02646_consen 185 ESAYSAALEADPELIEYAFKKNVVLVSPSTLMALLRTVAYLWRQEAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLD 264 (304)
T ss_pred hHHHHHHHhcChHHHHHHHHCCcEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766544432211 110 0112 344566666776666666555555666666777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002807 688 EGLKFYVTLQDAITNIKQ 705 (878)
Q Consensus 688 eG~~FY~~L~~~l~~l~~ 705 (878)
...+-|+++...+.+...
T Consensus 265 ~a~~~~~~~~~~~~~~~~ 282 (304)
T PF02646_consen 265 KAVKSYNKAVGSLEKRVG 282 (304)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 777777777655555443
No 344
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=8.9e+02 Score=24.76 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhch------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002807 629 EEIAQNIEAQEQLLMQIQAQNEEFSAIFNLE------DYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITN 702 (878)
Q Consensus 629 ~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~------~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~ 702 (878)
+-|........+.|++|..+-..-......+ .....-..++.+|-...+.|=+|++| .=+.+|+..+..
T Consensus 55 etVKgYa~hEketLe~Vt~aRs~a~~a~~~~~~~~~~~aq~~Ls~~L~rl~a~~E~YPdLKAn-----~~f~~Lq~ql~~ 129 (185)
T COG1704 55 ETVKGYASHEKETLEEVTEARSRAMSATTPNEQLTDQEAQAELSSALGRLFAVAEAYPDLKAN-----ENFLELQSQLEG 129 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCcchhhh-----hHHHHHHHHHHh
Confidence 3344444455666666666554443322211 22244456788888888999998887 335667777777
Q ss_pred HHHHH
Q 002807 703 IKQQC 707 (878)
Q Consensus 703 l~~~v 707 (878)
+.++|
T Consensus 130 tEn~I 134 (185)
T COG1704 130 TENRI 134 (185)
T ss_pred HHHHH
Confidence 77776
No 345
>PHA00489 scaffolding protein
Probab=21.24 E-value=5.9e+02 Score=22.69 Aligned_cols=44 Identities=14% Similarity=0.388 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 661 YRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 661 ~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R 714 (878)
...+|..++++|...|..|.. =|++|.+.+.++...-+|.+.+.
T Consensus 21 ~~sErTeaLqqlr~~ygSf~s----------Ey~elT~a~eKl~aek~DLivsN 64 (101)
T PHA00489 21 TESERTEALQQLRESYGSFHS----------EYEELTEALEKLTAEKEDLIVSN 64 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhhhhhhh
Confidence 346788899999888877643 25666666666666555555443
No 346
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.18 E-value=4.7e+02 Score=22.11 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002807 670 KQIQAAIAKYREIKENINEGLKFYVTLQDAITNI 703 (878)
Q Consensus 670 ~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l 703 (878)
+++.=++..|.+.++++-++.+|...|.+...++
T Consensus 28 ~~IlP~v~rY~~~s~~i~~~~~fwk~fFe~sAnV 61 (66)
T PF08655_consen 28 DKILPAVERYGESSEKIWDSAKFWKQFFEQSANV 61 (66)
T ss_pred cccchHHHHHHHHHHHHHHHHhHHHHHHHhhhcc
Confidence 4677788999999999999999999998766544
No 347
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.10 E-value=5.2e+02 Score=26.65 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 002807 506 NLQDRLNRFAGNLKQAAESD 525 (878)
Q Consensus 506 ~l~~~l~k~~~~L~~A~~sD 525 (878)
.|+.+|..+...|..+...-
T Consensus 100 rLkrELa~Le~~l~~~~~~~ 119 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAA 119 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999888776533
No 348
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.04 E-value=9.3e+02 Score=24.86 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHH---HHHHHHhhhhHHHHHHHHHHHHH-HHH
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYED---LFRKEISKYDHICEEIAQNIEAQ-EQL 641 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~---lf~~eL~kf~~l~~~I~~~~~~Q-~~L 641 (878)
...-..|+.+...++.|-..|..+...+ .+|...+-.-....+. .+...|.++......|......| .+-
T Consensus 14 ~~l~~~lk~~~~~~~~lv~~rk~la~~~------~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d 87 (198)
T cd07630 14 TKLSANMKEAAEKFLKIVNTEQRLANAL------GHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNN 87 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHHHHHH
Q 002807 642 LMQIQAQNEEFSAIFN-LEDYRASREKCYKQIQAAIAKYREIKENINEG------------LKFYVTLQDAITNIKQQCS 708 (878)
Q Consensus 642 l~~I~~~n~~f~~~~~-~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG------------~~FY~~L~~~l~~l~~~v~ 708 (878)
.-.+-.....+...-. ....-.+|.+++..+.+| ..+|.++ ...-..+.++....+..+.
T Consensus 88 ~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a-------~k~l~Kar~~k~~~ae~~~~~a~~~fe~iS~~~k~EL~ 160 (198)
T cd07630 88 ENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENA-------SKALEKAKPQKKEQAEEAKKKAETEFEEISSLAKKELE 160 (198)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHH
Q 002807 709 DFVMTRNIQCREMIEDV 725 (878)
Q Consensus 709 df~~~R~~E~~~L~~~l 725 (878)
.|-..|-.+-+.-+..+
T Consensus 161 rF~~~Rv~~fk~~l~~~ 177 (198)
T cd07630 161 RFHRQRVLELQSALVCY 177 (198)
T ss_pred HHHHHHHHHHHHHHHHH
No 349
>PRK05685 fliS flagellar protein FliS; Validated
Probab=20.98 E-value=5.6e+02 Score=24.51 Aligned_cols=73 Identities=18% Similarity=0.073 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002807 263 ALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKG-AAAQLLDAISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 263 ~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~-~~~~~~~~~~~l~~~i~~~l~~a~kdNd~ 335 (878)
.|=.|+.....|..+.+.+.+-+.--.+..|...+.+-...-.. ....+-+.+..|..-+...+-.+...||.
T Consensus 31 Lydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d~ 104 (132)
T PRK05685 31 LYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRNDV 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 44456666677777777777766666666677666554433211 12356667778888888888888777775
No 350
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.93 E-value=1.3e+03 Score=26.57 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 569 VGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 569 v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
-..+..++++|.++++....+.+.+...
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~L 238 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKL 238 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777766666665543
No 351
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.72 E-value=1e+03 Score=25.11 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 574 QSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQ 648 (878)
Q Consensus 574 ~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~ 648 (878)
.+-.+++.|.++|..+.+.+.+-...+.....+|..-...-+|+.+.-+.|...+..+++- ..-+.|+...++.
T Consensus 55 s~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~-~e~~~Ll~s~~~~ 128 (231)
T KOG3208|consen 55 SLENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAK-RERESLLESVRAD 128 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 3444555555666667777766333344444444433334556666666666666555332 3345555555543
No 352
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=20.71 E-value=2.3e+03 Score=29.29 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC--------------CCCCCCchHhHHHHHHHHHHHHHHH
Q 002807 453 EAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT--------------RWTRPQSSTLTKNLQDRLNRFAGNL 518 (878)
Q Consensus 453 ~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~--------------~W~r~~S~~l~~~l~~~l~k~~~~L 518 (878)
......+..++...+.+|-+.+.-|.+-+..+..++.+-.. .|.+.. ...-+.+++....+...|
T Consensus 1994 ~~rw~~l~~~s~~~~kkLLe~Q~~fkk~ee~~l~faKkaSafNwwfenaEE~l~~~~~~ns-~~Ei~~l~~~h~~f~~sl 2072 (2399)
T KOG0040|consen 1994 IKRWQQLLAASAARRQKLLEMQSQFRKIEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNS-LEEIRALRDAHEDFQASL 2072 (2399)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHhcccccccccc-hHHHHHHHHHHHHHHHHH
Confidence 33444555666667777777777777777777777665322 333332 222344566665555555
Q ss_pred HHHHhhHHHHHHHHHHhHHHHhhcC-hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 519 KQAAESDARIERSVRDHSALMSILD-RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDM 592 (878)
Q Consensus 519 ~~A~~sD~~v~~k~~~~~~~l~~L~-~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~ 592 (878)
..|.. .|.-|. .+.-.+.++..+.|.- --.+..|....+.|+.+.++|...++.
T Consensus 2073 s~a~~--------------df~~l~~ld~~iks~~v~~~pyt------w~t~e~Le~tw~~L~~iI~eR~~el~~ 2127 (2399)
T KOG0040|consen 2073 SSAQA--------------DFKQLAELDQQIKSFNVGSNPYT------WFTMEALEETWRNLQQIISERERELDK 2127 (2399)
T ss_pred hhchh--------------hHHHHHHHHHHHHhcCCCCCCce------eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 122111 1111223444333321 123567788888899999999887754
No 353
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.63 E-value=1e+03 Score=25.26 Aligned_cols=31 Identities=19% Similarity=0.044 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMK 597 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~ 597 (878)
..-.+|+.+...++.|-.+|..+-..+-+..
T Consensus 33 ~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa 63 (234)
T cd07665 33 CEEQRLRKLHAVVETLVNHRKELALNTALFA 63 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999999999988776543
No 354
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=20.55 E-value=1.1e+03 Score=25.57 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCC-CchHhHHHHHHHHHHHHHHHHHHHhhHHH
Q 002807 458 QLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRP-QSSTLTKNLQDRLNRFAGNLKQAAESDAR 527 (878)
Q Consensus 458 ~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~-~S~~l~~~l~~~l~k~~~~L~~A~~sD~~ 527 (878)
.|+.+...+...|.+++..|+. +|. .++ ..++...-+..-+.+|...+..+.++...
T Consensus 77 ~LP~l~~~I~~~l~~~~~eL~~-----------lG~--~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~ 134 (295)
T PF01031_consen 77 SLPSLKSEIQKKLQEAEKELKR-----------LGP--PRPETPEEQRAYLLQIISKFSRIFKDAIDGEYS 134 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----------HHH--CSSSCHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred hCcHHHHHHHHHHHHHHHHHHH-----------hCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3566666666666666665544 774 233 44566778888999999888888765543
No 355
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.51 E-value=1.6e+03 Score=27.51 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=4.4
Q ss_pred CChhHHHHHH
Q 002807 432 LPADLKEEVE 441 (878)
Q Consensus 432 lP~~l~~~~~ 441 (878)
|+..|+++|.
T Consensus 162 ll~TI~SRcq 171 (624)
T PRK14959 162 FPVTIVSRCQ 171 (624)
T ss_pred hhHHHHhhhh
Confidence 4444444444
No 356
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.32 E-value=1.9e+03 Score=28.31 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=13.5
Q ss_pred HHHHH-HHHHHHHHHHHHHHHh
Q 002807 665 REKCY-KQIQAAIAKYREIKEN 685 (878)
Q Consensus 665 re~~l-~~L~~A~~~y~el~~n 685 (878)
+...+ +.+..+|++|.=++.|
T Consensus 421 ~~~~l~~~~~d~~dAy~wlren 442 (1072)
T KOG0979|consen 421 RYRVLRQGSSDAYDAYQWLREN 442 (1072)
T ss_pred HHHHhccCchHHHHHHHHHHHC
Confidence 34444 4567778877777766
No 357
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.22 E-value=1.5e+03 Score=27.14 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHh
Q 002807 444 QISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAE 523 (878)
Q Consensus 444 ~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~ 523 (878)
+...|++-+.+..+.+.... +-+.=+..+..|.+|-..=..+|.+-.+ | ..|+.+-.. +.|-.+|..++++.+
T Consensus 16 Kv~Egve~Fd~i~ek~~~~~--n~sqkeK~e~DLKkEIKKLQRlRdQIKt-W--~ss~dIKDK--~~L~d~RrlIE~~ME 88 (575)
T KOG2150|consen 16 KVDEGVEIFDEIYEKLHSAN--NVSQKEKLESDLKKEIKKLQRLRDQIKT-W--QSSSDIKDK--DSLLDNRRLIEQRME 88 (575)
T ss_pred HhhhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHh-h--hcccccccH--HHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 002807 524 SDARIERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLED---------- 591 (878)
Q Consensus 524 sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~---------- 591 (878)
+|+..+...++=. +..| .....+|+-+.+.-....=+-+.|++|..|-+.++.
T Consensus 89 -------rfK~vEke~KtKa~SkegL--------~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh 153 (575)
T KOG2150|consen 89 -------RFKAVEKEMKTKAFSKEGL--------SAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERH 153 (575)
T ss_pred -------HHHHHHHHhhccccchhhc--------cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------HHHHhhccCCchhHHhhcCCCh-HHHHHHHHh-hh-hHHHHHHHHHHHHHHHHHHHH
Q 002807 592 ---------MLKEMKRKDDILPKLMTSAGSY-EDLFRKEIS-KY-DHICEEIAQNIEAQEQLLMQI 645 (878)
Q Consensus 592 ---------~lk~~~~~ddI~~kLi~~~~~~-e~lf~~eL~-kf-~~l~~~I~~~~~~Q~~Ll~~I 645 (878)
.||-. .|+++.+.-+....++ ..-.+.-.. .| +....+++-+++.++.++..+
T Consensus 154 ~~H~~~lEliLr~L-~N~E~~pe~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~l~le~~e~~~~~~ 218 (575)
T KOG2150|consen 154 RWHQQKLELILRLL-DNDELDPEAVNKVQDDITYYVESNQDPDFLEDETIYDDLNLEELEASMDAV 218 (575)
T ss_pred HHHHHHHHHHHHHh-hccccCHHHHhhhhHHHHHHHHhccCchhhhhhHHhhccCchhhhhhHhhh
No 358
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.10 E-value=2.4e+02 Score=27.03 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHH-HHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHH
Q 002807 227 SRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLK-AALFYAEACYRYSLELHEKEEIAEEIARLKSGIS 295 (878)
Q Consensus 227 A~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K-~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~ 295 (878)
..+++..|..+...+..... ..+...+..++.-. ..-|...|.+..|..+.+.+++-+|+..|+.+..
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~-~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDP-AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45677888888877753321 22333344444443 2447888889899988888888888888876544
No 359
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.09 E-value=5.8e+02 Score=22.10 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=40.4
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHHHHHHHHHHHHhcccc
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDA-ISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~-~~~l~~~i~~~l~~a~kdNd~ 335 (878)
+|+.....|....+.++|-+|+-.|..|.+.+... +. ....+. ...+....+..++|+++--++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e-kn-----~~~k~~i~~K~~~~a~~yl~RAE~Lk~~ 69 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT-SN-----ETMDQALQTKLKQLARQALDRAEALKES 69 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh-cC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667888888899999999999999988762 21 111111 123333334677777765443
Done!