Query 002807
Match_columns 878
No_of_seqs 284 out of 754
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 02:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xs1_A Programmed cell death 6 100.0 6E-125 2E-129 1136.5 82.2 683 9-714 4-704 (704)
2 3rau_A Tyrosine-protein phosph 100.0 1.3E-76 4.6E-81 660.9 36.6 355 11-377 5-363 (363)
3 1zb1_A BRO1 protein; AIP1, BRO 100.0 1.1E-76 3.9E-81 670.7 30.9 369 13-397 6-392 (392)
4 3c3r_A Programmed cell death 6 100.0 1.9E-71 6.5E-76 624.1 37.1 347 16-377 24-380 (380)
5 3r9m_A BRO1 domain-containing 100.0 1.6E-58 5.5E-63 518.5 35.4 333 17-362 7-359 (376)
6 3h0g_A DNA-directed RNA polyme 96.5 0.00039 1.3E-08 89.9 0.0 22 580-601 1345-1366(1752)
7 3h0g_A DNA-directed RNA polyme 96.4 0.00055 1.9E-08 88.5 0.0 13 280-292 837-849 (1752)
8 1twf_A B220, DNA-directed RNA 89.4 0.068 2.3E-06 69.5 0.0 20 581-600 1340-1359(1733)
9 3iot_A Maltose-binding protein 87.1 0.66 2.2E-05 52.3 6.3 17 695-711 356-372 (449)
10 1i84_S Smooth muscle myosin he 86.9 1.6 5.6E-05 55.5 10.4 24 151-174 419-444 (1184)
11 2crb_A Nuclear receptor bindin 86.3 4.3 0.00015 34.9 9.2 65 271-335 19-88 (97)
12 1twf_A B220, DNA-directed RNA 85.1 0.17 5.9E-06 65.8 0.0 14 188-201 522-535 (1733)
13 3ghg_A Fibrinogen alpha chain; 84.6 10 0.00036 42.5 13.7 86 449-543 66-151 (562)
14 1i84_S Smooth muscle myosin he 83.9 3.9 0.00013 52.1 11.7 12 76-87 186-197 (1184)
15 3s84_A Apolipoprotein A-IV; fo 79.5 63 0.0022 33.7 20.3 27 570-596 102-129 (273)
16 4gcn_A Protein STI-1; structur 76.1 20 0.00068 31.9 10.8 30 266-295 82-111 (127)
17 3q15_A PSP28, response regulat 73.2 34 0.0012 36.5 13.7 36 265-300 220-255 (378)
18 2w2u_A Hypothetical P60 katani 71.2 13 0.00044 31.5 7.5 63 264-331 16-78 (83)
19 4a5x_A MITD1, MIT domain-conta 70.3 22 0.00074 30.3 8.8 61 266-331 15-75 (86)
20 1wfd_A Hypothetical protein 15 69.6 23 0.0008 30.6 9.0 40 266-305 14-53 (93)
21 2hr2_A Hypothetical protein; a 69.1 80 0.0027 30.0 15.5 32 269-300 104-135 (159)
22 2v6y_A AAA family ATPase, P60 68.8 16 0.00055 30.9 7.6 66 266-336 10-75 (83)
23 3u3w_A Transcriptional activat 68.3 29 0.001 35.6 11.4 119 126-301 152-271 (293)
24 4fla_A Regulation of nuclear P 67.9 25 0.00086 33.4 9.5 48 662-709 95-142 (152)
25 3rkv_A Putative peptidylprolyl 67.7 73 0.0025 29.0 15.1 40 125-173 7-46 (162)
26 2cpt_A SKD1 protein, vacuolar 66.3 25 0.00085 31.8 8.8 39 266-304 17-55 (117)
27 3s84_A Apolipoprotein A-IV; fo 65.7 1.3E+02 0.0045 31.2 26.1 19 579-597 123-141 (273)
28 3ulq_A Response regulator aspa 65.3 67 0.0023 34.1 13.9 34 267-300 224-257 (383)
29 1deq_A Fibrinogen (alpha chain 65.1 71 0.0024 34.5 13.2 77 567-649 67-143 (390)
30 4fla_A Regulation of nuclear P 63.6 85 0.0029 29.7 12.3 35 614-648 74-108 (152)
31 3ro3_A PINS homolog, G-protein 63.3 77 0.0026 27.7 13.2 32 267-298 129-160 (164)
32 2v6x_A Vacuolar protein sortin 63.2 28 0.00095 29.4 8.1 39 266-304 12-50 (85)
33 2dl1_A Spartin; SPG20, MIT, st 62.7 52 0.0018 29.6 9.9 48 257-304 12-59 (116)
34 3vtx_A MAMA; tetratricopeptide 60.3 20 0.0007 33.4 7.6 29 127-164 3-31 (184)
35 4h8s_A DCC-interacting protein 59.1 2.1E+02 0.007 31.3 28.4 30 567-596 104-133 (407)
36 3eab_A Spastin; spastin, MIT, 58.1 48 0.0016 28.4 8.4 71 258-329 7-81 (89)
37 4a1s_A PINS, partner of inscut 57.3 1.8E+02 0.0061 30.6 15.6 34 267-300 303-336 (411)
38 4g1t_A Interferon-induced prot 55.9 1.1E+02 0.0037 33.2 13.8 25 270-294 433-457 (472)
39 1deq_A Fibrinogen (alpha chain 55.8 66 0.0023 34.7 10.9 30 450-479 70-99 (390)
40 3ghg_A Fibrinogen alpha chain; 55.7 1E+02 0.0035 34.7 12.8 33 676-708 130-162 (562)
41 3sf4_A G-protein-signaling mod 55.6 1.8E+02 0.006 30.3 15.0 19 126-144 124-142 (406)
42 1s0p_A CAP, adenylyl cyclase-a 55.5 20 0.0007 34.8 6.5 73 613-685 5-79 (176)
43 2qfc_A PLCR protein; TPR, HTH, 55.3 56 0.0019 33.4 10.6 118 126-300 152-270 (293)
44 3r84_A Mediator of RNA polymer 55.2 53 0.0018 27.9 8.2 45 664-708 16-68 (86)
45 2vrw_B P95VAV, VAV1, proto-onc 54.0 2E+02 0.0067 31.3 15.4 151 572-733 64-225 (406)
46 3q15_A PSP28, response regulat 52.6 2.3E+02 0.0078 29.8 16.4 30 271-300 340-369 (378)
47 3ro3_A PINS homolog, G-protein 52.5 1.2E+02 0.004 26.4 14.7 117 126-300 6-122 (164)
48 3o0z_A RHO-associated protein 52.4 24 0.00082 33.9 6.3 27 467-493 12-38 (168)
49 3gw4_A Uncharacterized protein 50.5 1.5E+02 0.0053 27.2 14.8 119 125-300 62-180 (203)
50 3sf4_A G-protein-signaling mod 48.5 1.4E+02 0.0049 31.0 12.8 37 126-171 84-120 (406)
51 2xs1_A Programmed cell death 6 48.1 4.1E+02 0.014 31.4 21.6 71 571-645 613-690 (704)
52 3nf1_A KLC 1, kinesin light ch 48.0 1.9E+02 0.0065 28.6 13.2 37 126-171 24-60 (311)
53 3ro2_A PINS homolog, G-protein 43.3 1.9E+02 0.0067 28.6 12.5 36 265-300 261-296 (338)
54 2pjw_H Uncharacterized protein 43.2 1.6E+02 0.0053 25.2 9.3 78 615-699 4-85 (88)
55 4a1s_A PINS, partner of inscut 42.8 3.1E+02 0.011 28.6 17.9 135 125-300 122-256 (411)
56 3ulq_A Response regulator aspa 42.5 2.9E+02 0.01 28.8 14.3 30 269-298 341-370 (383)
57 1hci_A Alpha-actinin 2; triple 41.7 3.9E+02 0.013 29.3 18.1 18 679-696 227-244 (476)
58 1m1j_A Fibrinogen alpha subuni 41.1 1.9E+02 0.0065 32.0 11.8 77 432-519 52-128 (491)
59 2q12_A DIP13 alpha, DCC-intera 40.9 3E+02 0.01 27.9 24.0 29 568-596 82-110 (265)
60 2pjw_V Vacuolar protein sortin 40.9 58 0.002 28.0 6.3 72 620-699 10-83 (91)
61 3mpx_A FYVE, rhogef and PH dom 40.5 2.6E+02 0.0088 30.6 13.7 153 570-731 70-233 (434)
62 3haj_A Human pacsin2 F-BAR; pa 40.5 4.3E+02 0.015 29.5 19.3 24 666-689 195-218 (486)
63 3edt_B KLC 2, kinesin light ch 39.6 2.7E+02 0.0091 26.8 12.7 36 126-170 40-75 (283)
64 1qoy_A Hemolysin E; toxin, mem 39.3 3.6E+02 0.012 28.3 21.0 27 688-714 273-307 (318)
65 2dfs_A Myosin-5A; myosin-V, in 38.8 4.2E+02 0.014 33.1 16.3 11 76-86 173-183 (1080)
66 4gwp_A Mediator of RNA polymer 38.7 86 0.0029 28.0 7.1 43 666-708 21-71 (115)
67 1hx1_B BAG-1, BAG-family molec 37.3 1.9E+02 0.0066 25.7 9.2 104 564-687 5-110 (114)
68 2avr_X Adhesion A; antiparalle 36.8 2.4E+02 0.0081 25.4 11.5 36 612-647 68-103 (119)
69 1quu_A Human skeletal muscle a 36.3 3.4E+02 0.012 27.1 17.5 16 616-631 49-64 (250)
70 3fx7_A Putative uncharacterize 35.8 2.1E+02 0.0073 24.6 11.5 70 616-700 13-82 (94)
71 4gyw_A UDP-N-acetylglucosamine 35.4 1.1E+02 0.0037 36.5 10.0 29 128-165 8-36 (723)
72 3uul_A Utrophin; spectrin repe 34.1 1.9E+02 0.0065 24.9 9.2 38 614-655 35-72 (118)
73 2qyw_A Vesicle transport throu 33.1 1.4E+02 0.0048 26.0 7.8 14 466-479 54-67 (102)
74 3ro2_A PINS homolog, G-protein 32.9 3.7E+02 0.013 26.5 16.2 34 266-299 182-215 (338)
75 3nf1_A KLC 1, kinesin light ch 31.8 3.8E+02 0.013 26.3 13.1 37 126-171 66-102 (311)
76 3ghg_C Fibrinogen gamma chain; 31.4 5.5E+02 0.019 28.1 13.8 36 565-600 36-71 (411)
77 3etw_A Adhesin A; antiparallel 31.3 2.9E+02 0.01 24.9 11.5 36 610-645 66-101 (119)
78 3iqc_A FLIS, flagellar protein 29.6 3.2E+02 0.011 24.8 10.2 73 263-335 32-105 (131)
79 3oja_B Anopheles plasmodium-re 29.3 6.2E+02 0.021 28.7 15.0 128 567-702 456-583 (597)
80 3vtx_A MAMA; tetratricopeptide 28.7 3.2E+02 0.011 24.7 10.4 27 269-295 143-169 (184)
81 3thf_A Protein shroom; coiled- 28.5 4.2E+02 0.014 25.8 15.6 116 573-699 22-140 (190)
82 1fzc_A Fibrin; blood coagulati 28.5 1.3E+02 0.0044 25.2 6.1 80 434-525 3-82 (87)
83 3id6_A NOP5, PRE mRNA splicing 27.5 3.8E+02 0.013 27.7 11.1 34 566-599 227-260 (268)
84 3gw4_A Uncharacterized protein 26.9 3.6E+02 0.012 24.5 13.2 34 127-169 24-57 (203)
85 1ihg_A Cyclophilin 40; ppiase 26.7 2.3E+02 0.008 30.2 10.1 39 124-171 218-256 (370)
86 3qwp_A SET and MYND domain-con 26.7 5.6E+02 0.019 28.0 13.4 36 266-301 370-405 (429)
87 4ad8_A DNA repair protein RECN 26.2 7.2E+02 0.025 27.7 14.7 51 686-736 304-358 (517)
88 2q13_A DCC-interacting protein 26.0 6.3E+02 0.021 27.0 25.5 29 569-597 83-111 (385)
89 1kmi_Z CHEZ, chemotaxis protei 25.7 3.2E+02 0.011 27.1 10.0 121 397-532 15-136 (214)
90 4abn_A Tetratricopeptide repea 25.4 5.3E+02 0.018 28.2 13.1 27 129-164 137-163 (474)
91 3t98_B Nucleoporin NUP58/NUP45 25.0 3E+02 0.01 23.7 8.2 17 671-687 52-68 (93)
92 1m1j_B Fibrinogen beta chain; 24.4 5.8E+02 0.02 28.5 12.6 81 449-542 102-187 (464)
93 3ky9_A Proto-oncogene VAV; cal 23.4 6.2E+02 0.021 28.9 13.4 150 573-733 237-397 (587)
94 3hhm_B NISH2 P85alpha; PI3KCA, 23.3 2.9E+02 0.01 29.9 9.8 48 671-718 213-260 (373)
95 3uun_A Dystrophin; triple heli 23.2 3.5E+02 0.012 23.0 10.5 37 614-654 35-71 (119)
96 3ghg_B Fibrinogen beta chain; 22.6 5.4E+02 0.018 28.6 11.7 34 449-482 97-130 (461)
97 1kt0_A FKBP51, 51 kDa FK506-bi 22.5 4.7E+02 0.016 28.5 11.9 35 124-167 263-297 (457)
98 1vcs_A Vesicle transport throu 22.5 96 0.0033 27.1 4.7 14 466-479 43-56 (102)
99 4etr_A Putative uncharacterize 22.5 1.9E+02 0.0066 26.9 7.3 54 673-726 10-65 (153)
100 3fhn_A Protein transport prote 22.2 2E+02 0.0068 34.0 8.7 77 570-647 10-99 (706)
101 3swk_A Vimentin; cytoskeleton, 22.0 3.6E+02 0.012 22.7 9.4 81 449-542 2-82 (86)
102 1sjj_A Actinin; 3-helix bundle 21.9 1.1E+03 0.036 28.2 16.0 135 569-712 365-499 (863)
103 2zqm_A Prefoldin beta subunit 21.8 3.8E+02 0.013 23.3 8.8 104 431-539 3-107 (117)
104 2pl2_A Hypothetical conserved 21.8 3.8E+02 0.013 25.5 9.8 120 131-296 7-147 (217)
105 2ieq_A S glycoprotein, spike g 21.6 1.4E+02 0.005 26.2 5.4 54 668-728 2-55 (109)
106 3l4q_C Phosphatidylinositol 3- 21.4 2E+02 0.0067 27.7 7.0 48 671-718 104-151 (170)
107 1p5q_A FKBP52, FK506-binding p 21.2 6.2E+02 0.021 26.1 12.0 35 124-167 142-176 (336)
108 3t06_A PDZ-rhogef, RHO guanine 21.2 7.9E+02 0.027 26.4 14.7 151 572-734 104-274 (418)
109 2v5f_A Prolyl 4-hydroxylase su 21.1 1E+02 0.0034 26.2 4.6 32 267-298 5-36 (104)
110 4g1t_A Interferon-induced prot 21.0 4.7E+02 0.016 27.8 11.4 34 129-171 51-84 (472)
111 2bez_C E2 glycoprotein; coiled 21.0 2.5E+02 0.0085 23.2 6.3 47 679-732 14-60 (77)
112 3onj_A T-snare VTI1; helix, HA 21.0 2.1E+02 0.0072 24.6 6.6 18 505-522 75-93 (97)
113 3gyz_A Chaperone protein IPGC; 20.9 3.6E+02 0.012 24.5 8.9 95 187-296 29-133 (151)
114 1m1j_A Fibrinogen alpha subuni 20.8 8.8E+02 0.03 26.8 15.5 70 458-543 55-124 (491)
115 3f1i_H Hepatocyte growth facto 20.7 4.1E+02 0.014 22.9 12.5 59 663-721 34-92 (98)
116 1lwu_A Fibrinogen alpha-1 chai 20.6 2.9E+02 0.01 24.6 7.2 54 432-493 23-76 (119)
117 3qwe_A GMIP, GEM-interacting p 20.6 7.2E+02 0.025 25.7 15.4 15 383-397 24-38 (279)
118 4adz_A CSOR; transcription, co 20.5 2.8E+02 0.0095 25.6 7.4 40 570-609 49-88 (136)
119 3gwk_C SAG1039, putative uncha 20.3 3.7E+02 0.013 22.3 10.6 62 451-523 12-76 (98)
No 1
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=100.00 E-value=5.8e-125 Score=1136.48 Aligned_cols=683 Identities=28% Similarity=0.451 Sum_probs=631.0
Q ss_pred ccccccccccccCCCCCCCCCChHHHHHHHhhhcC---CcchhhHHHHHHHHHHHHHHccc-CCCCCchhHHHHHHHHHH
Q 002807 9 SVAATTNIMLAIYEKKTSSIDLYRPLRNYISLTYS---EREAFNLEDDLETVKQLRSDVER-VPDPTPSTRRDLLQNYFK 84 (878)
Q Consensus 9 ~~~~~~~~~l~iplK~t~~vd~~~~L~~~I~~~y~---~~~~~~~~~dl~~l~~lR~~~~~-~~~~~~~~~~~~l~~Yy~ 84 (878)
+|.|+ +||+||||+|.+|||.++|++||.++|+ + +++.|+++|.+|+.||++++. ..+.++++ +++|.+||+
T Consensus 4 ~~~ms--~~l~~plK~t~~vd~~~~l~~~I~~~y~~~~e-~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~-~~~L~~Y~~ 79 (704)
T 2xs1_A 4 PFTMA--TFISVQLKKTSEVDLAKPLVKFIQQTYPSGGE-EQAQYCRAAEELSKLRRAAVGRPLDKHEGA-LETLLRYYD 79 (704)
T ss_dssp ----C--CCCCCCCCCBCCCCSHHHHHHHHHHTSCTTCH-HHHHHHHHHHHHHHHHHHHHTSCCCCCHHH-HHHHHHHHH
T ss_pred hhhHH--HhhcCCCCCCCcCCHHHHHHHHHHHhcCCccc-CHHHHHHHHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHH
Confidence 45666 6999999999999999999999999999 5 688999999999999999765 35666677 999999999
Q ss_pred HHHHHHhcCCCCCCCCCccccceeeecCCC------CCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHH
Q 002807 85 ALCLIETRFPISPDKDHINTVMFLWFDAFK------QKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLAS 158 (878)
Q Consensus 85 ~L~~l~~rfp~~~~~~~i~~l~F~W~ds~~------~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~ 158 (878)
+|+.|+.|||.+... .. |.|+|+|+|+ ++++++++++.||++|||||+|++|+++|+.++|.+++|+|.||
T Consensus 80 ~L~~l~~rfp~~~~~--~~-i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~ 156 (704)
T 2xs1_A 80 QICSIEPKFPFSENQ--IC-LTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAA 156 (704)
T ss_dssp HHHHHGGGSCTTTCS--SC-CCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH
T ss_pred HHHHHHcCCCCCCCc--cc-ceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999987642 33 7799999996 23578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Q 002807 159 HSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEAL 238 (878)
Q Consensus 159 ~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~ 238 (878)
++||+|||||+||++++ .+.+.+.+++||++++|.+|..+||||||||+|+||+.+++++++|||||++|+++|++|.
T Consensus 157 ~~fq~AAG~f~~l~~~~--l~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k~~liAkLa~~~~~~Y~~A~ 234 (704)
T 2xs1_A 157 KHYQFASGAFLHIKETV--LSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAF 234 (704)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHCSSCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--ccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999995 3344568899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 002807 239 GALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKL 318 (878)
Q Consensus 239 ~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l 318 (878)
+.+. .++.++++|..||++|..||.|+||||+|.++.++++||++||||+.|...++++.+.++... .+..+
T Consensus 235 ~~l~---~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~-----~~~~l 306 (704)
T 2xs1_A 235 KQCQ---YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYV-----NVKDF 306 (704)
T ss_dssp HHHH---TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTTC-----CCHHH
T ss_pred HHHc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHhcchH-----hHHHH
Confidence 9997 456788999999999999999999999999999999999999999999999999987654321 35678
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCCCCCCCccccccCCccchhhhHhhhhhccCChHHHHHHHhhHHHHHHHHHH
Q 002807 319 EANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRT 398 (878)
Q Consensus 319 ~~~i~~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~~~~~dlF~~LvP~~V~ea~s~Y~e~k~~lvr~ 398 (878)
.+.|+..+++++||||+|||++||+.++||+|+++.||||+++.+..++...|+|.+|||++||+++|.|+|+|++|||.
T Consensus 307 ~~~i~~~l~~~~kdNd~IY~e~VP~~~~L~~i~~~~lvk~~~~~~p~~~~~~dlF~~lVP~~v~ea~s~Y~e~k~~lvr~ 386 (704)
T 2xs1_A 307 SDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNR 386 (704)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCGGGSCCCCCCCCCCCCCCCSCCSTTCCCTTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCeeeccCCCCccccCCccCccccccCCCCcccccchhHHHHcccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998765554459999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 399 QAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQ 478 (878)
Q Consensus 399 ~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~ 478 (878)
++++++++|++++++|.+||||++|+++++ .+||++|++|+++|+..||++.|++.+++|.+++.+++++|++++++|+
T Consensus 387 ~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~-~~lP~~l~~~~~~i~~~~g~~~l~~~~~~l~~l~~~~~~~L~e~~~~L~ 465 (704)
T 2xs1_A 387 SIAQMREATTLANGVLASLNLPAAIEDVSG-DTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLD 465 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHCSST-TSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCChHHHHHHhc-CCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCc
Q 002807 479 KEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESALPTLAR 556 (878)
Q Consensus 479 ~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~ 556 (878)
+|+.+|++||.+||++|+|+||+.++.+|++++++|+++|++|+++|..|+++|+++.+.|++|+ .++|.+.+|++..
T Consensus 466 ~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l~~~~p~~~~ 545 (704)
T 2xs1_A 466 EEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANP 545 (704)
T ss_dssp HHHHHHHHHHHHCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 6789999999753
Q ss_pred CcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcC---C--ChHHHHHHHHh-hhhHHHHH
Q 002807 557 PIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSA---G--SYEDLFRKEIS-KYDHICEE 630 (878)
Q Consensus 557 p~~~l~~~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~---~--~~e~lf~~eL~-kf~~l~~~ 630 (878)
+ .++. ..+.+.+|+.++++|++|+.+|+.++++||+ .+|||+++||... + .++.+|.+||+ ||++++++
T Consensus 546 ~-~~~~--~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~--~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k~~~~~~~~ 620 (704)
T 2xs1_A 546 A-KTMQ--GSEVVNVLKSLLSNLDEVKKEREGLENDLKS--VNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTK 620 (704)
T ss_dssp C-GGGS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-cccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCccHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 3 2222 2468999999999999999999999999988 4899999999751 2 46789999996 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 631 IAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDF 710 (878)
Q Consensus 631 I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df 710 (878)
|++++.+|++||.+|+..|++|...++.+....+|+.++++|..||++|.||++||.||++||++|.+.+++++++|+||
T Consensus 621 i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L~~~~~~~~~~~~df 700 (704)
T 2xs1_A 621 VQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI 700 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 002807 711 VMTR 714 (878)
Q Consensus 711 ~~~R 714 (878)
|++|
T Consensus 701 ~~~R 704 (704)
T 2xs1_A 701 VFAR 704 (704)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 9998
No 2
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-76 Score=660.91 Aligned_cols=355 Identities=28% Similarity=0.447 Sum_probs=327.0
Q ss_pred ccccccccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHH
Q 002807 11 AATTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIE 90 (878)
Q Consensus 11 ~~~~~~~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~ 90 (878)
+++..|||++|||+|.+|||.++|++||.++|++ +++.|++||++|++||+++++. ..+.+| +++|.+||.||+.|+
T Consensus 5 ~~~~~pmi~l~lK~t~~vd~~~~L~~~I~~~y~e-~~~~~~~~l~~l~~LR~~~~~~-~~~~~g-~~~L~~Yy~qL~~l~ 81 (363)
T 3rau_A 5 AVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGE-NPEAYNEELKKLELLRQNAVRV-PRDFEG-CSVLRKYLGQLHYLQ 81 (363)
T ss_dssp -CCCCCCCCCCCCCEEEECCHHHHHHHHHHTTCS-CTTTTHHHHHHHHHHHHHHHTC-CSSHHH-HHHHHHHHHHHHHHH
T ss_pred cCCcCCccCCCCCcCCCCChHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhccC-CCCHHH-HHHHHHHHHHHHHHH
Confidence 4456699999999999999999999999999999 7899999999999999998874 445688 899999999999999
Q ss_pred hcCCCCCCCCCccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHH
Q 002807 91 TRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAY 170 (878)
Q Consensus 91 ~rfp~~~~~~~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~ 170 (878)
.|||++.+. ... |.|+|+|+|+ ++++++.++.||++|||||+|++||++|+.++|.+++|+|.||++||+|||+|+|
T Consensus 82 ~rfp~~~~~-~~~-i~F~W~ds~~-~~~~~~~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~ 158 (363)
T 3rau_A 82 SRVPMGSGQ-EAA-VPVTWTEIFS-GKSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAY 158 (363)
T ss_dssp HHSCCSTTC-TTC-CCEEEECTTT-CCEEEESCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCccc-ccc-eeEEeecccC-CccccccCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 999988642 233 7799999996 7789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCC---C
Q 002807 171 LRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPL---K 247 (878)
Q Consensus 171 l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~---~ 247 (878)
|++++. +.+++||++++|.+|..+||||||||+|+||+.+++++++|||||++|+++|++|.+.+..... .
T Consensus 159 l~~~~~------~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k~~liAkLa~q~~~~Y~~a~~~l~~~~~~~~~ 232 (363)
T 3rau_A 159 LREHFP------QAYSVDMSRQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLL 232 (363)
T ss_dssp HHHHCC------SCSSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcC------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 999942 5788999999999999999999999999999999999999999999999999999999976542 3
Q ss_pred CcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 002807 248 DHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLD 327 (878)
Q Consensus 248 ~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~ 327 (878)
+.++++|..||++|..||.|+||||+|+++.++++||++||||+.|.+.++++.+.+++....+.+.++.+.+.|++.++
T Consensus 233 ~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~~~~~i~~~l~ 312 (363)
T 3rau_A 233 GRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQPDTVQDALRFTMDVIGGKYN 312 (363)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999988887777788889999999999999
Q ss_pred HHHhcccccccccCCCCCCCCCCCCCccccccCCccchh-hhHhhhhhccC
Q 002807 328 RAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLD-ASKEKMFASLV 377 (878)
Q Consensus 328 ~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~-~~~~dlF~~Lv 377 (878)
+++||||||||++||+..+||+|+++.|||++|+.+... ..|.|||.+||
T Consensus 313 ~aekdNd~IY~~~VP~~~~L~~i~~~~lvk~~p~~~~~~~~~g~dlF~~lv 363 (363)
T 3rau_A 313 SAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPAVTGPDIFAKLV 363 (363)
T ss_dssp HHHHHHHHTTCCCCCCGGGSCCCCCCCCCCCCCCCTTCHHHHCSCTTTTCC
T ss_pred HHHhccCcCCcccCCCccccCCCCCCccccCCCCCcccccccccchhHHhC
Confidence 999999999999999999999999999999999987422 25789999997
No 3
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-76 Score=670.66 Aligned_cols=369 Identities=19% Similarity=0.302 Sum_probs=315.9
Q ss_pred ccccccccCCCCCCCCCChHHHHHHHhhhcCCcc-hhhHHHHHH-HHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHH
Q 002807 13 TTNIMLAIYEKKTSSIDLYRPLRNYISLTYSERE-AFNLEDDLE-TVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIE 90 (878)
Q Consensus 13 ~~~~~l~iplK~t~~vd~~~~L~~~I~~~y~~~~-~~~~~~dl~-~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~ 90 (878)
..++||++|||+|.+|||.++|++||.++|++++ ++.|+++|+ +|++||+++++. ++++++ +++|.+||.+|+.|+
T Consensus 6 m~~~~l~~plK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~~lR~~~~~~-~~~~~~-~~~l~~Y~~~L~~l~ 83 (392)
T 1zb1_A 6 MKPYLFDLKLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGE-LAPSSL-SEQNLKYYSFLEHLY 83 (392)
T ss_dssp CCCCCCCCCCCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHHHHHHHTTSS-CCHHHH-HHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHhhcC-CCChHH-HHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999842 566799999 999999999875 666677 999999999999999
Q ss_pred hcCCCCCCCCCccccceeeecCCC----CCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHH
Q 002807 91 TRFPISPDKDHINTVMFLWFDAFK----QKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAG 166 (878)
Q Consensus 91 ~rfp~~~~~~~i~~l~F~W~ds~~----~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG 166 (878)
.|||.++. ... |.|+|+|+|+ ++++++++++.||++|||||+|++|+++|+.++|. |+|.||++||+|||
T Consensus 84 ~rf~~~~~--~~~-i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~~~r~---~lk~A~~~fq~AAG 157 (392)
T 1zb1_A 84 FRLGSKGS--RLK-MDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVIFTQIARENINE---DYKNSIANLTKAFS 157 (392)
T ss_dssp HHHGGGGG--GGC-CCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHHHHHHHHHTTTS---SSHHHHHHHHHHHH
T ss_pred hcCCCCCC--ccc-ceeeeecccccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHH
Confidence 99998653 233 7799999996 67899999999999999999999999999999886 99999999999999
Q ss_pred HHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHHHHHHHHhhc
Q 002807 167 AFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAK---GSTPGVCAKISRQVGLYYEEALGALTV 243 (878)
Q Consensus 167 ~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~---~~k~~liAKLA~qv~~~Y~~a~~~l~~ 243 (878)
+|+||+++++ +.+++||++++|.+|+.+||||||||+|+||+.+ ++++++|||||++++++|++|.+.+..
T Consensus 158 ~f~~l~~~~~------~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~ 231 (392)
T 1zb1_A 158 CFEYLSENFL------NSPSVDLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKLSRATCNLFQKCHDFMKE 231 (392)
T ss_dssp HHHHHHHHCC------CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999953 4788999999999999999999999999999984 889999999999999999999999997
Q ss_pred CC--CCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 002807 244 AP--LKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEAN 321 (878)
Q Consensus 244 ~~--~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~ 321 (878)
.. ..+.++++|..||++|..+|+|+||||+|.++.++++||++||||+.|.+.++++.+.++.....+ ++..+.+.
T Consensus 232 ~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~--d~~~l~~~ 309 (392)
T 1zb1_A 232 IDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSLPFKTWLVEFI--DFDGFKET 309 (392)
T ss_dssp CCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHGGGCTTTTTTS--CHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHH
Confidence 76 336789999999999999999999999999999999999999999999999999987765433222 46689999
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCCCCCCCccccccCCccchhh----hH---hhhhhccCChHHHHHHHhhHHHHHH
Q 002807 322 LNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDA----SK---EKMFASLVPDSSAKALSRYTEMVDD 394 (878)
Q Consensus 322 i~~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~~----~~---~dlF~~LvP~~V~ea~s~Y~e~k~~ 394 (878)
|++.+++++||||+||||+||+..+||+|+++.|||+++++++.++ .+ .|||.+|||++||+++|+|+|||++
T Consensus 310 i~~~l~~a~kdNd~IY~e~VP~~~~L~~i~~~~~vk~~~~~~~~~~~~~~~~~~~~dlF~~lvP~~v~~a~s~Y~e~k~~ 389 (392)
T 1zb1_A 310 LEKKQKELIKDNDFIYHESVPAVVQVDSIKALDAIKSPTWEKILEPYMQDVANKYDSLYRGIIPLDVYEKESIYSEEKAT 389 (392)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCSSCCGGGSCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHhCccCcCCCCCccccccCCCcCcccccCCcccchhHHHhcccccchHHHhhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986432 23 7999999999999999999999999
Q ss_pred HHH
Q 002807 395 VIR 397 (878)
Q Consensus 395 lvr 397 (878)
|||
T Consensus 390 lvr 392 (392)
T 1zb1_A 390 LLR 392 (392)
T ss_dssp ---
T ss_pred HhC
Confidence 987
No 4
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=100.00 E-value=1.9e-71 Score=624.10 Aligned_cols=347 Identities=29% Similarity=0.445 Sum_probs=316.1
Q ss_pred cccccCCCCCCCCCChHHHHHHHhhhcC---CcchhhHHHHHHHHHHHHHHcccC-CCCCchhHHHHHHHHHHHHHHHHh
Q 002807 16 IMLAIYEKKTSSIDLYRPLRNYISLTYS---EREAFNLEDDLETVKQLRSDVERV-PDPTPSTRRDLLQNYFKALCLIET 91 (878)
Q Consensus 16 ~~l~iplK~t~~vd~~~~L~~~I~~~y~---~~~~~~~~~dl~~l~~lR~~~~~~-~~~~~~~~~~~l~~Yy~~L~~l~~ 91 (878)
+||++|||+|.+|||.++|++||.++|+ + +++.|+++|++|++||++++.. .+.++++ +++|.+||.+|..|+.
T Consensus 24 ~~l~~plK~t~~vd~~~~l~~~I~~~y~~~~e-~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~-~~~L~~Y~~~L~~l~~ 101 (380)
T 3c3r_A 24 TFISVQLKKTSEVDLAKPLVKFIQQTYPSGGE-EQAQYCRAAEELSKLRRAAVGRPLDKHEGA-LETLLRYYDQICSIEP 101 (380)
T ss_dssp CCCCCCCCCBCCCCCHHHHHHHHHHHCCCCSS-STTSHHHHHHHHHHHHHHHHHSSCCCSHHH-HHHHHHHHHHHHHHTT
T ss_pred cccCCCCCCCCcCChHHHHHHHHHHhcCCccc-CHHHHHHHHHHHHHHHHHHhhcCCCcChHH-HHHHHHHHHHHHHHHc
Confidence 6999999999999999999999999999 6 7899999999999999998653 5566677 9999999999999999
Q ss_pred cCCCCCCCCCccccceeeecCCC------CCCcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHH
Q 002807 92 RFPISPDKDHINTVMFLWFDAFK------QKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAA 165 (878)
Q Consensus 92 rfp~~~~~~~i~~l~F~W~ds~~------~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AA 165 (878)
|||.++.. .. |.|+|+|+|+ +++++++.++.||++|||||+|++|+++|..++|.+++|+|.||++||+||
T Consensus 102 rfp~~~~~--~~-i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AA 178 (380)
T 3c3r_A 102 KFPFSENQ--IC-LTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFAS 178 (380)
T ss_dssp TTTCSSCC--CC-CCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCc--cc-eeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 99987643 33 7799999996 236789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCC
Q 002807 166 GAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAP 245 (878)
Q Consensus 166 G~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~ 245 (878)
|||+||++++ .+.+...+++||++++|.+|..+||||||||+|+||+.+++++++|||||++|+++|++|.+.+.
T Consensus 179 G~f~~l~~~~--l~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~--- 253 (380)
T 3c3r_A 179 GAFLHIKETV--LSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQ--- 253 (380)
T ss_dssp HHHHHHHHHH--HHHCSSCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhc--ccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHc---
Confidence 9999999995 33445688999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 002807 246 LKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRN 325 (878)
Q Consensus 246 ~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~ 325 (878)
.++.++++|+.+|++|..+|.|+|+||+|.++.++++||++||||+.|.+.++++.+.++... .++.+.+.|++.
T Consensus 254 ~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~-----~l~~l~~~i~~~ 328 (380)
T 3c3r_A 254 YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYV-----NVKDFSDKINRA 328 (380)
T ss_dssp TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTTC-----CCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcchH-----hHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999999999999987765432 356788999999
Q ss_pred HHHHHhcccccccccCCCCCCCCCCCCCccccccCCccchhhhHhhhhhccC
Q 002807 326 LDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLV 377 (878)
Q Consensus 326 l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~~~~~dlF~~Lv 377 (878)
+++++||||+||||+||+..+||+|+++.|||++++.+..++...|||.+||
T Consensus 329 l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~lvk~~~~~~p~~~~~~d~F~~lv 380 (380)
T 3c3r_A 329 LAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMV 380 (380)
T ss_dssp HHHHHHHHHHTTCCCCCCGGGSCCCCCCCCCCCCCCCSCCSSSCCCTTCCC-
T ss_pred HHHHHHhhCeecccCCCCcccCCCCCCCceecccCCCCCCccchhHHHHHhC
Confidence 9999999999999999999999999999999999998765554459999997
No 5
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=100.00 E-value=1.6e-58 Score=518.47 Aligned_cols=333 Identities=17% Similarity=0.232 Sum_probs=283.7
Q ss_pred ccccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHccc---CCCCCchhHHHHHHHHHHHHHHHHhcC
Q 002807 17 MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVER---VPDPTPSTRRDLLQNYFKALCLIETRF 93 (878)
Q Consensus 17 ~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~---~~~~~~~~~~~~l~~Yy~~L~~l~~rf 93 (878)
|-..|||.|..|+|.. ...+. + ....+.|++++.+|..++. .+..+.++++++|.+||.+|+.|..+|
T Consensus 7 ~~r~~lk~T~~v~F~~-------~~~~~-~-~~~~~~~~~l~~~R~~l~~~~~~~~~~~~~~~~~l~~Yl~~L~~l~~~~ 77 (376)
T 3r9m_A 7 FHRNPLKATAPVSFNY-------YGVVT-G-PSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSL 77 (376)
T ss_dssp CCCCCCCCBCCCCCCC-------GGGBC-S-HHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHGGGTBCS
T ss_pred cccCCCCCCceeeeee-------eeecC-C-chHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 5567999999999963 12222 2 4568889999999997753 233345677899999999999999999
Q ss_pred CCCCCCC-CccccceeeecCCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhC---CCCChHhHHHHHHHHHHHHHHHH
Q 002807 94 PISPDKD-HINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSC---DRTTVEGRRLASHSFIAAAGAFA 169 (878)
Q Consensus 94 p~~~~~~-~i~~l~F~W~ds~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~---~r~~~~~lK~A~~~fq~AAG~F~ 169 (878)
+...+.. ....|.|+|+|+|+++.++++.++.||++|||||||++|+++|+.+ +|.+++|+|.||++||+|||||+
T Consensus 78 ~~~~~~~~l~~~i~F~W~dsl~~~~~~~~~sl~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 78 DESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp SCTTCBCTTTTSCCEEECCTTSTTCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccccccceeEeeCCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 8643221 1134889999999877889999999999999999999999999975 67889999999999999999999
Q ss_pred HHHhhhhccccC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002807 170 YLRDNAATKASV--GSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLK 247 (878)
Q Consensus 170 ~l~~~~~~~~~~--~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~ 247 (878)
||+++++ +.+ ...+++||++++|.+|..+||||||||+|+||+.+++++++|||||++|+++|++|.+.+.. ..
T Consensus 158 ~l~~~~~--~~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~--~~ 233 (376)
T 3r9m_A 158 HLKESHL--PKLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSS--LE 233 (376)
T ss_dssp HHHHHTG--GGCSSCCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTT--SC
T ss_pred HHHHhhh--hcccCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHh--cc
Confidence 9999953 322 23578999999999999999999999999999999999999999999999999999999975 35
Q ss_pred CcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchh----------HHHHHHHHH
Q 002807 248 DHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAA----------AQLLDAISK 317 (878)
Q Consensus 248 ~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~----------~~~~~~~~~ 317 (878)
+.++.+|..||++|..||.|+||||+|.++.++++||++||||+.|.+.++++.+.++.+. ......++.
T Consensus 234 ~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (376)
T 3r9m_A 234 PAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRK 313 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCCGGGSHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhHHHH
Confidence 6789999999999999999999999999999999999999999999999999987644211 011235788
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCCCCCCC-CCccccccCCc
Q 002807 318 LEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLP-AFSMVKPMAMN 362 (878)
Q Consensus 318 l~~~i~~~l~~a~kdNd~IY~e~VP~~~~Lp~i~-~~~~vk~~~~~ 362 (878)
+.+.|++.+++++||||+||||+||+...+++++ +..||||+++.
T Consensus 314 l~~~i~~~l~~a~kdNd~IY~~~VP~~~p~~~~k~~~~lvk~~~~~ 359 (376)
T 3r9m_A 314 LGNLVKNTLEKCQRENGFIYFQKIPTEAPQLELKANYGLVEPIPFE 359 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCSSCCCCCCCCC
T ss_pred HHHHHHHHHHHHHhhccceecccCCCCCCCcccccccceecCcCCC
Confidence 9999999999999999999999999988888886 68999998764
No 6
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.53 E-value=0.00039 Score=89.92 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q 002807 580 ETLGAQRAGLEDMLKEMKRKDD 601 (878)
Q Consensus 580 ~~l~~qR~~l~~~lk~~~~~dd 601 (878)
=-|++-|+.++++|+.-+..+.
T Consensus 1345 lGIEAAR~~Ii~Ei~~v~~~~G 1366 (1752)
T 3h0g_A 1345 LGIEATRSALLKELRNVIEFDG 1366 (1752)
T ss_dssp SCHHHHHHHHHHHHHTTSCSSS
T ss_pred HhHHHHHHHHHHHHHHHHHhcC
Confidence 3688999999999999886543
No 7
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.37 E-value=0.00055 Score=88.54 Aligned_cols=13 Identities=23% Similarity=0.074 Sum_probs=6.4
Q ss_pred hhchHHHHHHHHH
Q 002807 280 KEEIAEEIARLKS 292 (878)
Q Consensus 280 ~~~~GeaIa~L~~ 292 (878)
..+-|-.-.||-.
T Consensus 837 TA~SGYLqRRLVk 849 (1752)
T 3h0g_A 837 TAETGYIQRRLVK 849 (1752)
T ss_dssp TTHHHHHHHHHHH
T ss_pred cCcCchhHHHHHH
Confidence 3455555555533
No 8
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=89.45 E-value=0.068 Score=69.53 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 002807 581 TLGAQRAGLEDMLKEMKRKD 600 (878)
Q Consensus 581 ~l~~qR~~l~~~lk~~~~~d 600 (878)
-+++-|+.++++++.-+..+
T Consensus 1340 GIEAAR~~Ii~Ei~~V~~~~ 1359 (1733)
T 1twf_A 1340 GIEAGRAALYKEVYNVIASD 1359 (1733)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhhc
Confidence 66778888888888776543
No 9
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=87.12 E-value=0.66 Score=52.27 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002807 695 TLQDAITNIKQQCSDFV 711 (878)
Q Consensus 695 ~L~~~l~~l~~~v~df~ 711 (878)
+..+.+.++.+++++..
T Consensus 356 ~~eeal~~~~~~~~~i~ 372 (449)
T 3iot_A 356 TVDAALAAAQTNAAAMA 372 (449)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 34555555565555543
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.91 E-value=1.6 Score=55.51 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=12.1
Q ss_pred hHhHHHHHHHHHHH--HHHHHHHHhh
Q 002807 151 VEGRRLASHSFIAA--AGAFAYLRDN 174 (878)
Q Consensus 151 ~~~lK~A~~~fq~A--AG~F~~l~~~ 174 (878)
.+....+...|-+| +-+|.||.+.
T Consensus 419 ~~~a~~~rdalak~lY~~lF~wlv~~ 444 (1184)
T 1i84_S 419 KEQADFAIEALAKAKFERLFRWILTR 444 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555444 3466776543
No 11
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=86.31 E-value=4.3 Score=34.92 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=44.6
Q ss_pred HHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchh--H--HHHHH-HHHHHHHHHHHHHHHHhcccc
Q 002807 271 YRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAA--A--QLLDA-ISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 271 y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~--~--~~~~~-~~~l~~~i~~~l~~a~kdNd~ 335 (878)
-+.|..+...++|++||.+.+.|..+|.+|.+...... . .+..+ =..-...|+...+++.++-.+
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqLQrd~HlKQ~~liq~r~k~~~~ee~l 88 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERWKRAKREERL 88 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34677788899999999999999999999998864321 1 11111 112235777788888776543
No 12
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=85.10 E-value=0.17 Score=65.84 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHHH
Q 002807 188 DISVECAGMLERLM 201 (878)
Q Consensus 188 Dls~~~L~~L~~lm 201 (878)
-++.+++.+++.|+
T Consensus 522 ~~~QD~v~g~y~lT 535 (1733)
T 1twf_A 522 GIVQDTLCGIRKLT 535 (1733)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred eeeccccccceeee
Confidence 44455555555554
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.57 E-value=10 Score=42.49 Aligned_cols=86 Identities=13% Similarity=0.232 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARI 528 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v 528 (878)
++.|+..++++.+.+..+......+.++|.+.......+...|+ +++.+|+..+..++..+..=...=..|
T Consensus 66 INELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtyn---------E~S~ELRRrIqyLKekVdnQlsnIrvL 136 (562)
T 3ghg_A 66 INKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYN---------RVSEDLRSRIEVLKRKVIEKVQHIQLL 136 (562)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888888899999999888888888888875 556778888888877665433333444
Q ss_pred HHHHHHhHHHHhhcC
Q 002807 529 ERSVRDHSALMSILD 543 (878)
Q Consensus 529 ~~k~~~~~~~l~~L~ 543 (878)
+..|++....|+.|.
T Consensus 137 QsnLedq~~kIQRLE 151 (562)
T 3ghg_A 137 QKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555554
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=83.94 E-value=3.9 Score=52.06 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q 002807 76 RDLLQNYFKALC 87 (878)
Q Consensus 76 ~~~l~~Yy~~L~ 87 (878)
...+.+|+..+.
T Consensus 186 ~k~~~~yla~~~ 197 (1184)
T 1i84_S 186 TKKVIQYLAVVA 197 (1184)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 466667776654
No 15
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=79.49 E-value=63 Score=33.65 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=12.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 002807 570 GALKQ-SLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 570 ~~Lr~-ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
.+|+. +...+++++..=.-+.++++.+
T Consensus 102 eelr~kl~~~veelk~~L~Py~eelr~k 129 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYADEFKVK 129 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhHhHHHHHHHH
Confidence 33443 3334444544444444444444
No 16
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=76.10 E-value=20 Score=31.94 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHH
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGIS 295 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~ 295 (878)
.|.+++..|..+...+++-+||..++.|..
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777888888888889999988877653
No 17
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=73.17 E-value=34 Score=36.45 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 265 FYAEACYRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 265 f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
..+.+++..|..+...+++.+|+.+++.|.......
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 345566667777777788889999998888876654
No 18
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=71.17 E-value=13 Score=31.53 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 264 LFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVK 331 (878)
Q Consensus 264 ~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~k 331 (878)
.=.|+.....|..+...++|.+|+.+++.|.+.|..+.+..+.. . .-..+.+.|..-++|+++
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~--~---~k~~ir~K~~eY~~RAE~ 78 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDG--S---TAAIYEQMINEYKRRIEV 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTS--S---THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH--H---HHHHHHHHHHHHHHHHHH
Confidence 34567777788888889999999999999999998886553221 1 122355666666777664
No 19
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=70.33 E-value=22 Score=30.31 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=43.4
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVK 331 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~k 331 (878)
.|+.....|......++|.+|+.++..|.+.|-.+.+..... . .-..+...|..-++++|+
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~--~---~k~~lr~K~~eYl~RAE~ 75 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDN--T---KRCNLREKISKYMDRAEN 75 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCH--H---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCH--H---HHHHHHHHHHHHHHHHHH
Confidence 456667778888888999999999999999998887654321 1 123345566666666655
No 20
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=69.62 E-value=23 Score=30.55 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=34.5
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCC
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPK 305 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k 305 (878)
.|+.....|..+...++|.+|+.++..|.+.|..+.+...
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~ 53 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK 53 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6777788888888889999999999999999998877643
No 21
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=69.13 E-value=80 Score=30.01 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 269 ACYRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 269 A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
|+|..|..+..-+++-+||..|+.|.++.-+-
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 55888888888899999999999998887543
No 22
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=68.81 E-value=16 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=49.3
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRV 336 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~I 336 (878)
.|+.....|......++|.+|+.++..|.+.|..+.+..+.. . .-..+...|..-++|+++--..+
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~--~---~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPES--V---ARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTC--T---THHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH--H---HHHHHHHHHHHHHHHHHHHHHHc
Confidence 677778888888889999999999999999998886543221 1 12345677788888888765554
No 23
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=68.30 E-value=29 Score=35.55 Aligned_cols=119 Identities=12% Similarity=0.009 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 002807 126 LEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQA 205 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQA 205 (878)
+..+.+++|+|.+|...+. ...|..+|++|--++.-+ .+.......++.++.....
T Consensus 152 ~~~~~~~~~lg~~y~~~g~---------~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~nlg~~y~ 207 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGY---------LKKGIDLFEQILKQLEAL---------------HDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp THHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHS---------------SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhc---------------ccchhHHHHHHHHHHHHHH
Confidence 4667789999999986543 688999999976544321 0122333444444433211
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhh-chH
Q 002807 206 QECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKE-EIA 284 (878)
Q Consensus 206 QEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~-~~G 284 (878)
..--| .++-.+|+.|++...... ..++.+.+++..|..+...+ .+-
T Consensus 208 ~~~~y-----------------~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~lg~~~~~~g~~~~ 254 (293)
T 3u3w_A 208 LDSRY-----------------EESLYQVNKAIEISCRIN----------------SMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HTTCH-----------------HHHHHHHHHHHHHHHHTT----------------BCTTHHHHHHHHHHHHHHTTCCHH
T ss_pred HHhHH-----------------HHHHHHHHHHHHHHHHcC----------------cHHHHHHHHHHHHHHHHHhCCcHH
Confidence 11111 122345666665443221 12334667777777777767 468
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002807 285 EEIARLKSGISALTEAK 301 (878)
Q Consensus 285 eaIa~L~~A~~~l~~a~ 301 (878)
+|+.+++.|..+.+...
T Consensus 255 ~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 255 EIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999988887553
No 24
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=67.94 E-value=25 Score=33.36 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 662 RASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSD 709 (878)
Q Consensus 662 ~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~d 709 (878)
.+.|..+++.|..+...|.+......+-.+=|.+..+.+..++.++.+
T Consensus 95 ~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 95 LEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655555555555555555555555555555544443
No 25
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=67.68 E-value=73 Score=28.96 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHh
Q 002807 125 HLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRD 173 (878)
Q Consensus 125 ~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~ 173 (878)
..+.+..+.+.|..+...+ ....|+.+|++|..++.....
T Consensus 7 ~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~al~~~~~~~~ 46 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQK---------DYKEAIDAYRDALTRLDTLIL 46 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcc
Confidence 4577888888888887543 478999999998887766543
No 26
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=66.32 E-value=25 Score=31.83 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=33.0
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCC
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSP 304 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~ 304 (878)
.|+.....|......++|.+||-+|..|.++|..+.+..
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e 55 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYE 55 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677778888888999999999999999998887654
No 27
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=65.70 E-value=1.3e+02 Score=31.21 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002807 579 LETLGAQRAGLEDMLKEMK 597 (878)
Q Consensus 579 l~~l~~qR~~l~~~lk~~~ 597 (878)
+++++..=..-+++|++.+
T Consensus 123 ~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 123 ADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555543
No 28
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=65.27 E-value=67 Score=34.06 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
+.+++..|..+...+++.+|+.+++.|....+..
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 4455666776777788888888888887776543
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.06 E-value=71 Score=34.51 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQ 646 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~ 646 (878)
..|.+|+..|..+...-.+=..++..+.+.+ .+-+....+.+.+|.+...-....+..|..++..|-.-|+.|+
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~l------k~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVELM------RGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4456666666655555555555555554433 2223333344555544444333344445555555554555555
Q ss_pred HHH
Q 002807 647 AQN 649 (878)
Q Consensus 647 ~~n 649 (878)
...
T Consensus 141 ~~l 143 (390)
T 1deq_A 141 KNV 143 (390)
T ss_pred HHH
Confidence 433
No 30
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=63.64 E-value=85 Score=29.66 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 614 EDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQ 648 (878)
Q Consensus 614 e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~ 648 (878)
...|++...+...++.++.+.+.....|+.-|.+.
T Consensus 74 ~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~ 108 (152)
T 4fla_A 74 SKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEY 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666555543
No 31
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=63.27 E-value=77 Score=27.67 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=23.2
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISALT 298 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~ 298 (878)
+.+++..|..+...+++-+|+.+++.|....+
T Consensus 129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45556666667777888889888888776654
No 32
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=63.17 E-value=28 Score=29.38 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=32.2
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCC
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSP 304 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~ 304 (878)
.|+.....|......++|.+|+..+..|.+.+..+.+..
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e 50 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYE 50 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 566667778888888999999999999999998876543
No 33
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.75 E-value=52 Score=29.59 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCC
Q 002807 257 HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSP 304 (878)
Q Consensus 257 ~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~ 304 (878)
+-.+|.+|=+|..+.-.|+...|.++--+|+.+|+.+...|..+....
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~ 59 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISIS 59 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcccc
Confidence 445788888899999999999998888899999999999999998764
No 34
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=60.33 E-value=20 Score=33.42 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHH
Q 002807 127 EKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAA 164 (878)
Q Consensus 127 Eka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~A 164 (878)
|.+.|.||+|.+|...|. ...|..+|++|
T Consensus 3 e~~~iy~~lG~~~~~~g~---------~~~A~~~~~~a 31 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGD---------FDGAIRAYKKV 31 (184)
T ss_dssp -CHHHHHHHHHHHHHHTC---------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCC---------HHHHHHHHHHH
Confidence 567899999999987654 67888888886
No 35
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=59.09 E-value=2.1e+02 Score=31.25 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
.....|...-.-++++...+..+++.+...
T Consensus 104 ~~~~~l~~f~~~~~ei~~~~~~L~~~~~~~ 133 (407)
T 4h8s_A 104 EVISTLHYFSKVVDELNLLHTELAKQLADT 133 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666767777777666543
No 36
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=58.08 E-value=48 Score=28.40 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhh---hchHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHH
Q 002807 258 VQLKAALFYAEACYRYSLELHEK---EEIAEEIARLKSGISALTEAKKSP-KGAAAQLLDAISKLEANLNRNLDRA 329 (878)
Q Consensus 258 ~~~K~~~f~A~A~y~~a~~~~e~---~~~GeaIa~L~~A~~~l~~a~~~~-k~~~~~~~~~~~~l~~~i~~~l~~a 329 (878)
..+|.+|=.|.-+.-.|+...|. ++-.+||.+|+.....|..+.... .+ ..+-++....+++.+...|..+
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g-~G~~we~Ar~LQ~KM~~nL~~v 81 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTG-QGEQCERARRLQAKMMTNLVMA 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCC-CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCC-CChhHHHHHHHHHHHHHHHHHH
Confidence 35667777777777788888887 667789999999999999887763 22 2334566677777776666655
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=57.32 E-value=1.8e+02 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=21.6
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
+.+++..|..+...+++.+|+.+++.|.......
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 4455556666666677777777777776665443
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=55.93 E-value=1.1e+02 Score=33.16 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=6.9
Q ss_pred HHHHhHhhhhhhchHHHHHHHHHHH
Q 002807 270 CYRYSLELHEKEEIAEEIARLKSGI 294 (878)
Q Consensus 270 ~y~~a~~~~e~~~~GeaIa~L~~A~ 294 (878)
++..|..+...+++-+|+.+++.|.
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444445555554443
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.77 E-value=66 Score=34.75 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 450 AALEAELQQLRDLRRVNQELLVQTEELLQK 479 (878)
Q Consensus 450 ~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~ 479 (878)
+.|...|..+.+....+......+.++|.+
T Consensus 70 e~L~~~L~~~s~s~~~~~~y~~~~~~~lk~ 99 (390)
T 1deq_A 70 NKLRDSLFNYQKNSKDSNTLTKNIVELMRG 99 (390)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.74 E-value=1e+02 Score=34.68 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 676 IAKYREIKENINEGLKFYVTLQDAITNIKQQCS 708 (878)
Q Consensus 676 ~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~ 708 (878)
+.....|+.+|++=..=-..|+..|..-.+.|+
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444444444444443
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=55.62 E-value=1.8e+02 Score=30.27 Aligned_cols=19 Identities=42% Similarity=0.711 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002807 126 LEKAAVLFNLGAVYSQIGL 144 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~ 144 (878)
...+.+++++|.+|...+.
T Consensus 124 ~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 124 VGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC
Confidence 3457789999999998887
No 42
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=55.50 E-value=20 Score=34.82 Aligned_cols=73 Identities=11% Similarity=0.224 Sum_probs=51.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 613 YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFN--LEDYRASREKCYKQIQAAIAKYREIKEN 685 (878)
Q Consensus 613 ~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~--~~~~~~~re~~l~~L~~A~~~y~el~~n 685 (878)
|++++...|+.|-.+...|...+..|..++.+.-..-..|...-. ..+....-+.+|+-|..++..-.+++++
T Consensus 5 fD~~i~~~l~~~~~~s~~iGg~v~~~a~~v~~aF~~qr~~L~~as~~kKP~~~~~~~lL~pl~~~i~~i~~~re~ 79 (176)
T 1s0p_A 5 FQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDS 79 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHc
Confidence 677889999999999999999999998888777766666654321 1222233556777777777666666654
No 43
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=55.33 E-value=56 Score=33.38 Aligned_cols=118 Identities=11% Similarity=-0.015 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 002807 126 LEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQA 205 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQA 205 (878)
+..+.+++|+|.+|...+ ....|..+|++|-.++.-..+. ......++.++.....
T Consensus 152 ~~~~~~~~~lg~~y~~~~---------~~~~A~~~~~kal~~~~~~~~~---------------~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENG---------YLKKGIDLFEQILKQLEALHDN---------------EEFDVKVRYNHAKALY 207 (293)
T ss_dssp THHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHhcCcc---------------ccchHHHHHhHHHHHH
Confidence 346778999999998643 3688999999987666432111 1111123332221111
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHH
Q 002807 206 QECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAE 285 (878)
Q Consensus 206 QEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~Ge 285 (878)
..|. -.++-.+|+.|++...... ..+..+.+++..|..+...+++-+
T Consensus 208 ---------~~~~--------y~~Al~~~~kal~~~~~~~----------------~~~~~~~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 208 ---------LDSR--------YEESLYQVNKAIEISCRIN----------------SMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp ---------HTTC--------HHHHHHHHHHHHHHHHHTT----------------BCSSHHHHHHHHHHHHHHTTCCHH
T ss_pred ---------HHhh--------HHHHHHHHHHHHHHHHhcC----------------cHHHHHHHHHHHHHHHHHcCCcHH
Confidence 0110 0123345555554432211 122335667777887888888989
Q ss_pred H-HHHHHHHHHHHHHH
Q 002807 286 E-IARLKSGISALTEA 300 (878)
Q Consensus 286 a-Ia~L~~A~~~l~~a 300 (878)
| ..+++.|..+.+..
T Consensus 255 Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 255 EIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9 66688888776543
No 44
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=55.21 E-value=53 Score=27.92 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-------HHHH-HHHHHHHHHHHHHHHHHHH
Q 002807 664 SREKCYKQIQAAIAKYREIKEN-------INEG-LKFYVTLQDAITNIKQQCS 708 (878)
Q Consensus 664 ~re~~l~~L~~A~~~y~el~~n-------l~eG-~~FY~~L~~~l~~l~~~v~ 708 (878)
+--.+++....++..|.+.+.+ +++. ..||..|...-.+|+++|+
T Consensus 16 ~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk 68 (86)
T 3r84_A 16 QLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQ 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666666665442 4433 4599999888888887654
No 45
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=54.03 E-value=2e+02 Score=31.32 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 572 LKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEE 651 (878)
Q Consensus 572 Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~ 651 (878)
++.+...+++|..--..++.+|++...+.+ .....++|.+....|..+...+.. ...-..+++++...+..
T Consensus 64 ~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~--------~~~ig~~f~~~~~~~~~Y~~Y~~n-~~~a~~~l~~~~~~~~~ 134 (406)
T 2vrw_B 64 METIFVNIEELFSVHTHFLKELKDALAGPG--------ATTLYQVFIKYKERFLVYGRYCSQ-VESASKHLDQVATARED 134 (406)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSGG--------GTTHHHHHHHHTTGGGHHHHHHHH-HHHHHHHHHHHHHHCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhcCCC--------ccHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhcCHH
Confidence 445566666666655667777777654321 112455666665555555554432 23334556666555555
Q ss_pred HHHhhhchhHHH-----HHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHH
Q 002807 652 FSAIFNLEDYRA-----SREKC----YKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMT--RNIQCRE 720 (878)
Q Consensus 652 f~~~~~~~~~~~-----~re~~----l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~--R~~E~~~ 720 (878)
|...-..-.... .-..+ +|+|..=--.+.+|..+. ++..=|.+|.+.+..+. .+.+.++. |+.|...
T Consensus 135 f~~~l~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t-~~~~d~~~l~~Al~~i~-~v~~~iNe~~r~~e~~~ 212 (406)
T 2vrw_B 135 VQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAMR-DLAQCVNEVKRDNETLR 212 (406)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHTTHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCCcchHHHhhhHHHHHhhHHHHHHHHHHhC-CCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 533211000000 00111 244433333445555555 44444667776666655 34445554 3344444
Q ss_pred HHHHHHHhccccc
Q 002807 721 MIEDVQRQMAGLN 733 (878)
Q Consensus 721 L~~~l~~~~~~~~ 733 (878)
-+.+|+..+.+..
T Consensus 213 ~l~~lq~~i~~~~ 225 (406)
T 2vrw_B 213 QITNFQLSIENLD 225 (406)
T ss_dssp HHHHHHHHEESCS
T ss_pred HHHHHHHHHhCCC
Confidence 4556777776543
No 46
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=52.58 E-value=2.3e+02 Score=29.76 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=18.7
Q ss_pred HHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 271 YRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 271 y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
+..|......+++-+|+.+++.|...-+..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345555556677777777777766555443
No 47
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=52.48 E-value=1.2e+02 Score=26.39 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 002807 126 LEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQA 205 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQA 205 (878)
...+.+++++|.++...+ ....|..+|++|-.++.-..+. . ..+.....+|..
T Consensus 6 ~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~al~~~~~~~~~----------------~--~~~~~~~~l~~~ 58 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLG---------NFRDAVIAHEQRLLIAKEFGDK----------------A--AERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCH----------------H--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHHHHhCCc----------------h--HHHHHHHHHHHH
Confidence 457788999999887543 3688888998877666443221 1 111122222221
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchHH
Q 002807 206 QECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAE 285 (878)
Q Consensus 206 QEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~Ge 285 (878)
. + ..+. -..+..+|+.|+........ ....+.+++..|..+...+++.+
T Consensus 59 ~--~-----~~g~--------~~~A~~~~~~a~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~ 107 (164)
T 3ro3_A 59 Y--I-----FLGE--------FETASEYYKKTLLLARQLKD----------------RAVEAQSCYSLGNTYTLLQDYEK 107 (164)
T ss_dssp H--H-----HTTC--------HHHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred H--H-----HcCC--------HHHHHHHHHHHHHHHHHhCC----------------cHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 0 0111 12334466666665543211 11224445556666667788888
Q ss_pred HHHHHHHHHHHHHHH
Q 002807 286 EIARLKSGISALTEA 300 (878)
Q Consensus 286 aIa~L~~A~~~l~~a 300 (878)
++.+++.|.......
T Consensus 108 A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 108 AIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888887776543
No 48
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=52.44 E-value=24 Score=33.90 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhCC
Q 002807 467 QELLVQTEELLQKEATEDAQFRSQFGT 493 (878)
Q Consensus 467 ~~~L~e~~~~L~~E~~eD~~~R~kyG~ 493 (878)
...|+++...|..|......+|...+.
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tE 38 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTE 38 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446777788888888777777776553
No 49
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=50.49 E-value=1.5e+02 Score=27.24 Aligned_cols=119 Identities=16% Similarity=0.109 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHH
Q 002807 125 HLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQ 204 (878)
Q Consensus 125 ~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQ 204 (878)
....+.+++|+|.+|...+ ....|..+|++|..++.-.. |-......+ ...+|.
T Consensus 62 ~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~--~~~lg~ 115 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAG---------NWDAARRCFLEERELLASLP---------------EDPLAASAN--AYEVAT 115 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHSC---------------CCHHHHHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHcC---------------ccHHHHHHH--HHHHHH
Confidence 3566788999999887654 36788888888777664211 111111222 222222
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchH
Q 002807 205 AQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIA 284 (878)
Q Consensus 205 AQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~G 284 (878)
.... .|. -.++..+|++|+....... .....+.++...|..+...+++.
T Consensus 116 ~~~~-------~g~--------~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 116 VALH-------FGD--------LAGARQEYEKSLVYAQQAD----------------DQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHH-------HTC--------HHHHHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHH-------hCC--------HHHHHHHHHHHHHHHHhcc----------------chHHHHHHHHHHHHHHHHCcCHH
Confidence 1100 011 1123345556655443221 12233455566677777788899
Q ss_pred HHHHHHHHHHHHHHHH
Q 002807 285 EEIARLKSGISALTEA 300 (878)
Q Consensus 285 eaIa~L~~A~~~l~~a 300 (878)
+++.+++.|.....+.
T Consensus 165 ~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 165 EAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999888877654
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=48.46 E-value=1.4e+02 Score=31.02 Aligned_cols=37 Identities=22% Similarity=0.056 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHH
Q 002807 126 LEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYL 171 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l 171 (878)
...+.+++++|.+|...+ ....|..+|++|-.++.-.
T Consensus 84 ~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLG---------NFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHhc
Confidence 455777888888886543 3678888888877666543
No 51
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=48.10 E-value=4.1e+02 Score=31.40 Aligned_cols=71 Identities=6% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCC----hHH---HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002807 571 ALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS----YED---LFRKEISKYDHICEEIAQNIEAQEQLLM 643 (878)
Q Consensus 571 ~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~----~e~---lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~ 643 (878)
....+.+.|+......+.++.+|+.. +.++... ..... -+. -+.....+|..+...|++......+|.+
T Consensus 613 ~~~~~~~~i~~~~~~Q~~ll~~i~~~--~~~f~~~--~~~~~~~~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L~~ 688 (704)
T 2xs1_A 613 VYGGLTTKVQESLKKQEGLLKNIQVS--HQEFSKM--KQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTE 688 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--hccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778888988888999999999875 2333221 00000 011 1333445666666666666666665554
Q ss_pred HH
Q 002807 644 QI 645 (878)
Q Consensus 644 ~I 645 (878)
.+
T Consensus 689 ~~ 690 (704)
T 2xs1_A 689 IL 690 (704)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=47.99 E-value=1.9e+02 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHH
Q 002807 126 LEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYL 171 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l 171 (878)
-+.+.+++++|.++...+ ....|..+|+.|-.++.-.
T Consensus 24 ~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~a~~~~~~~ 60 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQG---------RYEVAVPLCKQALEDLEKT 60 (311)
T ss_dssp CHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHH
Confidence 367788999999887543 3678888888877665543
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=43.32 E-value=1.9e+02 Score=28.63 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 002807 265 FYAEACYRYSLELHEKEEIAEEIARLKSGISALTEA 300 (878)
Q Consensus 265 f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a 300 (878)
..+.+++..|..+...+++.+|+.+++.|.......
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 345566666777777788888888888887776554
No 54
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=43.20 E-value=1.6e+02 Score=25.18 Aligned_cols=78 Identities=9% Similarity=0.162 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002807 615 DLFRKEISKYDHICEEIAQNIEAQ--EQLL--MQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGL 690 (878)
Q Consensus 615 ~lf~~eL~kf~~l~~~I~~~~~~Q--~~Ll--~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~ 690 (878)
.||. +.++.+.+...+...--.. .+++ .+|+..+.+...+| -+--+++.+...-++.+.++.+.+....
T Consensus 4 ~vf~-q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lR------PkL~~li~kysqKk~eL~~Ln~kl~~a~ 76 (88)
T 2pjw_H 4 IVFS-QKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLR------PQVTRMLGKYAKEKEDMLSLRQVLANAE 76 (88)
T ss_dssp HHHH-THHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-hHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 5666666666554321111 2444 46776666554433 2344566666777777778888888888
Q ss_pred HHHHHHHHH
Q 002807 691 KFYVTLQDA 699 (878)
Q Consensus 691 ~FY~~L~~~ 699 (878)
+-|++|.+.
T Consensus 77 ~~Yd~lle~ 85 (88)
T 2pjw_H 77 RSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888888653
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=42.81 E-value=3.1e+02 Score=28.58 Aligned_cols=135 Identities=14% Similarity=0.028 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHH
Q 002807 125 HLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQ 204 (878)
Q Consensus 125 ~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQ 204 (878)
....+.+++++|.+|...+ ....|..+|++|..++.-+.+.. ....++..|..+...+
T Consensus 122 ~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~-------------~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMG---------RFDEAAICCERHLTLARQLGDRL-------------SEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCHH-------------HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHhhchH-------------HHHHHHHHHHHHHHHc
Confidence 3566777888888776543 36788888888776665443220 0011111222222211
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHHhHhhhhhhchH
Q 002807 205 AQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIA 284 (878)
Q Consensus 205 AQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A~y~~a~~~~e~~~~G 284 (878)
.+- .+.-..+....--.+.-..+..+|+.|++...... .....+.+++..|..+...+++.
T Consensus 180 g~~---~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 180 GKH---LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG----------------DRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp HHH---HHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred Ccc---cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHHHHHcCChH
Confidence 110 00011111111112223344455555554443211 11223445666677777778899
Q ss_pred HHHHHHHHHHHHHHHH
Q 002807 285 EEIARLKSGISALTEA 300 (878)
Q Consensus 285 eaIa~L~~A~~~l~~a 300 (878)
+|+.+++.|.......
T Consensus 241 ~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 241 AAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999998887777653
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=42.47 E-value=2.9e+02 Score=28.81 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=17.0
Q ss_pred HHHHHhHhhhhhhchHHHHHHHHHHHHHHH
Q 002807 269 ACYRYSLELHEKEEIAEEIARLKSGISALT 298 (878)
Q Consensus 269 A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~ 298 (878)
++...|..+...+++.+|+.+++.|...-+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666655443
No 57
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=41.69 E-value=3.9e+02 Score=29.34 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=8.6
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 002807 679 YREIKENINEGLKFYVTL 696 (878)
Q Consensus 679 y~el~~nl~eG~~FY~~L 696 (878)
..+-+..|.+...|+..+
T Consensus 227 ~~~R~~~L~~~~~~~~~~ 244 (476)
T 1hci_A 227 TQKRREALERMEKLLETI 244 (476)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555555433
No 58
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.15 E-value=1.9e+02 Score=31.98 Aligned_cols=77 Identities=10% Similarity=0.251 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHH
Q 002807 432 LPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRL 511 (878)
Q Consensus 432 lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l 511 (878)
|-..|.+.-..|+.. ++.|...+.++.++..........+.++|.+-....+.+-..|+ +++.+|+.++
T Consensus 52 LqglL~kqerdv~~r--I~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~---------e~S~eLe~ri 120 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQR--IDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYG---------HVSTELRRRI 120 (491)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHH--HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHH---------HHHHHHHHHH
Confidence 444455555556543 77777888888888888888888888888887776666666664 4455666666
Q ss_pred HHHHHHHH
Q 002807 512 NRFAGNLK 519 (878)
Q Consensus 512 ~k~~~~L~ 519 (878)
.-++..+.
T Consensus 121 ~yIK~kVd 128 (491)
T 1m1j_A 121 VTLKQRVA 128 (491)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 59
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=40.93 E-value=3e+02 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 568 IVGALKQSLRQLETLGAQRAGLEDMLKEM 596 (878)
Q Consensus 568 ~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~ 596 (878)
....|...-+-+.+|...|..++.++...
T Consensus 82 ~~~~L~~f~~~l~ei~~~~~~l~~~~~~~ 110 (265)
T 2q12_A 82 MSSTLQQFSKVIDELSSCHAVLSTQLADA 110 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777788888888777554
No 60
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=40.86 E-value=58 Score=28.02 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002807 620 EISKYDHICEEIAQNIEAQEQLL--MQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQ 697 (878)
Q Consensus 620 eL~kf~~l~~~I~~~~~~Q~~Ll--~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~ 697 (878)
-+-.|..+++++... .+.+++ .+|++.+.+-...|. +-.+.+..-..-++.+.++.+++.+.++-|..|.
T Consensus 10 ~I~lF~~lv~~~k~~--~~~~i~~d~~LqeLy~kv~~lRP------KL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lL 81 (91)
T 2pjw_V 10 SIYMFASLVEKMKSR--PLNEILEDSKLQNLAQRVFASKA------RLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLL 81 (91)
T ss_dssp HHHHHHHHHHHHHTC--SCSTTTTTTHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CcccccCCHHHHHHHHHHHhHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666555443 233444 356666655444332 2334455555566677788888888888888886
Q ss_pred HH
Q 002807 698 DA 699 (878)
Q Consensus 698 ~~ 699 (878)
+.
T Consensus 82 E~ 83 (91)
T 2pjw_V 82 EQ 83 (91)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 61
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.54 E-value=2.6e+02 Score=30.56 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 570 GALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQN 649 (878)
Q Consensus 570 ~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n 649 (878)
..++.+...|++|..--..++.+|+....+.+. .....++|.+....|..+...+. +...-..+++++...+
T Consensus 70 ~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~~~-------~~~ig~ifl~~~~~~~~Y~~Y~~-n~~~a~~~l~~~~~~~ 141 (434)
T 3mpx_A 70 EELRQGLSELPAIHDLHQGILEELEERLSNWES-------QQKVADVFLAREQGFDHHATHIL-QFDRYLGLLSENCLHS 141 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-------CCCCTHHHHTTTTTHHHHHHHHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccC-------cccHHHHHHHhhHHHHHHHHHHH-hHHHHHHHHHHHHHhC
Confidence 456667888888888777799999887654211 01123344333333333332222 1122233333333333
Q ss_pred HHHHHhhh---chh--HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHH
Q 002807 650 EEFSAIFN---LED--YRASREKC----YKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMT--RNIQC 718 (878)
Q Consensus 650 ~~f~~~~~---~~~--~~~~re~~----l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~--R~~E~ 718 (878)
..|...-+ ... ..-.-..+ +++|..=--.+.+|..+..++..=|.+|.+.+..+.. +.+.++. |+.|.
T Consensus 142 ~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~-v~~~iN~~~~~~e~ 220 (434)
T 3mpx_A 142 PRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISK-VTDRANDSMEQGEN 220 (434)
T ss_dssp HHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHH-HHHHHHHHCTTHHH
T ss_pred hHHHHHHHHHHcCcccCCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33332111 000 00001111 3444433344556666655555567777777776663 3334443 44455
Q ss_pred HHHHHHHHHhccc
Q 002807 719 REMIEDVQRQMAG 731 (878)
Q Consensus 719 ~~L~~~l~~~~~~ 731 (878)
.+-+.+|+..+.+
T Consensus 221 ~~~l~~l~~~i~~ 233 (434)
T 3mpx_A 221 LQKLVHIEHSVRG 233 (434)
T ss_dssp HHHHHHHHHHEET
T ss_pred HHHHHHHHHHhcC
Confidence 5555667776654
No 62
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=40.52 E-value=4.3e+02 Score=29.52 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 002807 666 EKCYKQIQAAIAKYREIKENINEG 689 (878)
Q Consensus 666 e~~l~~L~~A~~~y~el~~nl~eG 689 (878)
+++.+.+..|-+.|......+++-
T Consensus 195 ~k~~~~~~~a~~~Y~~~v~~~n~~ 218 (486)
T 3haj_A 195 EKCKQDVLKTKEKYEKSLKELDQG 218 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445554444444433
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=39.58 E-value=2.7e+02 Score=26.84 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHH
Q 002807 126 LEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAY 170 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~ 170 (878)
-+.+.+++++|.+|...+ ....|..+|+.|-.++.-
T Consensus 40 ~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~~ 75 (283)
T 3edt_B 40 PDVATMLNILALVYRDQN---------KYKEAAHLLNDALAIREK 75 (283)
T ss_dssp HHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc---------cHHHHHHHHHHHHHHHHH
Confidence 345677888888776543 357788888887666543
No 64
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=39.35 E-value=3.6e+02 Score=28.30 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=18.0
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Q 002807 688 EGLKFY--------VTLQDAITNIKQQCSDFVMTR 714 (878)
Q Consensus 688 eG~~FY--------~~L~~~l~~l~~~v~df~~~R 714 (878)
|++.|| ..|...+.++-+.|..|..-|
T Consensus 273 ~~~~~~~~~d~~l~~~l~~~~~~l~~~C~eY~~~h 307 (318)
T 1qoy_A 273 ETTRFYVDYDDLMLSLLKEAAKKMINTCNEYQKRH 307 (318)
T ss_dssp HTCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCceeeeeCCHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 456775 346677778888887776543
No 65
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.76 E-value=4.2e+02 Score=33.09 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 002807 76 RDLLQNYFKAL 86 (878)
Q Consensus 76 ~~~l~~Yy~~L 86 (878)
.+.+.+|+..+
T Consensus 173 ~K~i~~yla~~ 183 (1080)
T 2dfs_A 173 AKYAMRYFATV 183 (1080)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 45555665544
No 66
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=38.75 E-value=86 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------HH-HHHHHHHHHHHHHHHHHHHHH
Q 002807 666 EKCYKQIQAAIAKYREIKEN-------IN-EGLKFYVTLQDAITNIKQQCS 708 (878)
Q Consensus 666 e~~l~~L~~A~~~y~el~~n-------l~-eG~~FY~~L~~~l~~l~~~v~ 708 (878)
-.+++.+..++..|.+++.+ +. ....||.+|......|++.|+
T Consensus 21 ~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK 71 (115)
T 4gwp_A 21 CSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQ 71 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666654332 22 345699999988888887664
No 67
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=37.29 E-value=1.9e+02 Score=25.71 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002807 564 TEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLM 643 (878)
Q Consensus 564 ~~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~ 643 (878)
.++.....|+.+-..++.+..+=+.+..+|... ..+.- .+.++.+.+.+.+.-+.... +.=..+|+
T Consensus 5 eeE~~lK~L~~veksv~~~~kkl~~~~~el~~i----------ekGFL-~kel~~eal~kldKrik~~~---E~~MK~LE 70 (114)
T 1hx1_B 5 QEEVELKKLKHLEKSVEKIADQLEELNKELTGI----------QQGFL-PKDLQAEALCKLDRRVKATI---EQFMKILE 70 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHSCS-CHHHHHHHHHTTHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHccc-ccHhHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344556677777666666665555555555332 11211 26788888888776444333 22355555
Q ss_pred HHHHH--HHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002807 644 QIQAQ--NEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENIN 687 (878)
Q Consensus 644 ~I~~~--n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~ 687 (878)
.|... .+.| ...+..|..++.++..+.+.-..+..+|.
T Consensus 71 ~lDsl~i~e~~------~~~R~kRK~lV~~iQ~~l~~cD~l~~~i~ 110 (114)
T 1hx1_B 71 EIDTLILPENF------KDSRLKRKGLVKKVQAFLAECDTVEQNIC 110 (114)
T ss_dssp HHTTCCCCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhhcccCChhH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55432 1223 34456788888888887777776666553
No 68
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=36.79 E-value=2.4e+02 Score=25.42 Aligned_cols=36 Identities=17% Similarity=0.420 Sum_probs=31.1
Q ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002807 612 SYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQA 647 (878)
Q Consensus 612 ~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~ 647 (878)
-+.+-|..-+++|+.+...|+..+..|+.+|.....
T Consensus 68 ~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 68 FYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999875544
No 69
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=36.29 E-value=3.4e+02 Score=27.06 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=8.1
Q ss_pred HHHHHHhhhhHHHHHH
Q 002807 616 LFRKEISKYDHICEEI 631 (878)
Q Consensus 616 lf~~eL~kf~~l~~~I 631 (878)
-....++|+..+...|
T Consensus 49 ~v~~llkkh~~~~~el 64 (250)
T 1quu_A 49 EVRALLRKHEAFESDL 64 (250)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555665554444
No 70
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=35.77 E-value=2.1e+02 Score=24.63 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=40.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002807 616 LFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVT 695 (878)
Q Consensus 616 lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~ 695 (878)
-|..+|+.|.. .|-.+....+..|....+.++ .+|.++-..+......+....++..+=+.|-..
T Consensus 13 ~Fa~~L~~F~d-------------~Lq~~~~~L~~~f~~L~sWqD--qkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~ 77 (94)
T 3fx7_A 13 EFVGHLERFKE-------------LLREEVNSLSNHFHNLESWRD--ARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKE 77 (94)
T ss_dssp HHHHHHHHHHH-------------HHHHHHHHHHHHHHHCCSCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHhccchHhh--HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHH
Confidence 36666666643 334556666777777654443 455555555555555555555566666666665
Q ss_pred HHHHH
Q 002807 696 LQDAI 700 (878)
Q Consensus 696 L~~~l 700 (878)
++..+
T Consensus 78 ~i~vl 82 (94)
T 3fx7_A 78 RIRVL 82 (94)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=35.43 E-value=1.1e+02 Score=36.50 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHH
Q 002807 128 KAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAA 165 (878)
Q Consensus 128 ka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AA 165 (878)
.+-.++|+|.+|...|. +.+|..+|++|-
T Consensus 8 ~a~al~nLG~~~~~~G~---------~~eAi~~~~kAl 36 (723)
T 4gyw_A 8 HADSLNNLANIKREQGN---------IEEAVRLYRKAL 36 (723)
T ss_dssp HHHHHHHHHHHHHHTTC---------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC---------HHHHHHHHHHHH
Confidence 46689999999986653 678888888863
No 72
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=34.05 E-value=1.9e+02 Score=24.88 Aligned_cols=38 Identities=5% Similarity=0.141 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 614 EDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAI 655 (878)
Q Consensus 614 e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~~ 655 (878)
-......++++..+...|. .....+..|...-..+...
T Consensus 35 ~~~v~~~l~~h~~l~~ei~----~~~~~v~~v~~~g~~L~~~ 72 (118)
T 3uul_A 35 VEDVKEQFATHETFMMELS----AHQSSVGSVLQAGNQLMTQ 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 4556777888887766554 4566677777766666543
No 73
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=33.12 E-value=1.4e+02 Score=26.05 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 002807 466 NQELLVQTEELLQK 479 (878)
Q Consensus 466 ~~~~L~e~~~~L~~ 479 (878)
+...|+|++++|+.
T Consensus 54 ie~~ldEA~eLl~q 67 (102)
T 2qyw_A 54 FDEKQQEANETLAE 67 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555544
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=32.86 E-value=3.7e+02 Score=26.46 Aligned_cols=34 Identities=6% Similarity=-0.083 Sum_probs=22.7
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHH
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTE 299 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~ 299 (878)
.+.+++..|..+...+++.+++..++.|......
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3445555666666677778888877777666554
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=31.82 E-value=3.8e+02 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHH
Q 002807 126 LEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYL 171 (878)
Q Consensus 126 fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l 171 (878)
...+.+++++|.+|...+ ....|..+|+.|..++.-+
T Consensus 66 ~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQN---------KYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHH
Confidence 345678888888887543 3677888888876665443
No 76
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.44 E-value=5.5e+02 Score=28.14 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002807 565 EDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKD 600 (878)
Q Consensus 565 ~~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~d 600 (878)
++..+.+|+..|++|.+.-.+=..++..|+.....+
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~ 71 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPD 71 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccc
Confidence 356788888888888888888888888888775544
No 77
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=31.29 E-value=2.9e+02 Score=24.85 Aligned_cols=36 Identities=17% Similarity=0.404 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002807 610 AGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQI 645 (878)
Q Consensus 610 ~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I 645 (878)
...|.+.|..-+++|..+...|+..+..|+.+++..
T Consensus 66 ~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 66 TRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334788999999999999999999999999887644
No 78
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=29.61 E-value=3.2e+02 Score=24.83 Aligned_cols=73 Identities=16% Similarity=0.038 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002807 263 ALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKG-AAAQLLDAISKLEANLNRNLDRAVKENDR 335 (878)
Q Consensus 263 ~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~-~~~~~~~~~~~l~~~i~~~l~~a~kdNd~ 335 (878)
.|=.|+.....|..+.+.+.+-+....+..|...+.+-...-.. ...++...+..|.+-+.+.|-++...||.
T Consensus 32 Lydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~An~~~d~ 105 (131)
T 3iqc_A 32 LYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDA 105 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhhhcCH
Confidence 44456666777777777777777777777777777654332211 11356667788888888888888888775
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.33 E-value=6.2e+02 Score=28.65 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002807 567 AIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQ 646 (878)
Q Consensus 567 ~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~ 646 (878)
+.+.+++..+.++++-..+-+..+..++..+ ++....+...........+..-+.+..+.++.+........+.+++.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEI--DTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002807 647 AQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITN 702 (878)
Q Consensus 647 ~~n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~ 702 (878)
+..+++ +...++++++-+.++...+...+++..+..-.+=..+|.+.+.+
T Consensus 534 ~~~~~~------~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 534 AKQKET------EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhcch------hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
No 80
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=28.73 E-value=3.2e+02 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=18.2
Q ss_pred HHHHHhHhhhhhhchHHHHHHHHHHHH
Q 002807 269 ACYRYSLELHEKEEIAEEIARLKSGIS 295 (878)
Q Consensus 269 A~y~~a~~~~e~~~~GeaIa~L~~A~~ 295 (878)
+++..|..+...+++.+|+..++.|.+
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455566666667777788877776654
No 81
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.54 E-value=4.2e+02 Score=25.77 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHH
Q 002807 573 KQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNI---EAQEQLLMQIQAQN 649 (878)
Q Consensus 573 r~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~---~~Q~~Ll~~I~~~n 649 (878)
..+-.+|..|+++|+.+.++++....--+-...++.. ..--.++.||.-++..|+.-+ -.-..-|..+....
T Consensus 22 ~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~-----~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL 96 (190)
T 3thf_A 22 KHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAE-----KVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSL 96 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456678888899999998887642211111111221 122445566666655554332 11222222222221
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002807 650 EEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDA 699 (878)
Q Consensus 650 ~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~ 699 (878)
..-...+ .....+|+....++..| .++++|+..-..+-.++...
T Consensus 97 ~~~~~Er--~sL~~K~~~L~~Q~EDA----keLKe~ldRRe~~V~~iL~~ 140 (190)
T 3thf_A 97 ETRQQER--GALESKRDLLYEQMEEA----QRLKSDIERRGVSIAGLLAK 140 (190)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 1100000 11223333334444444 67788887777666555443
No 82
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=28.49 E-value=1.3e+02 Score=25.25 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHH
Q 002807 434 ADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNR 513 (878)
Q Consensus 434 ~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k 513 (878)
++|..+++.++.. +...++.|.-|..++++.+.+ |..-|-.-|-.+|+=-|+ -.|.-.-++....+.+++|
T Consensus 3 edLrrrI~~Lkrk-----V~~q~~~i~~Lq~nvr~Q~ve---mkRLEVDIDIKiRsCKGS-Car~~~~~vd~~~Y~~~qK 73 (87)
T 1fzc_A 3 EDLRSRIEVLKRK-----VIEKVQHIQLLQKNVRAQLVD---MKRLEVDIDIKIRSCRGS-CSRALAREVDLKDYEDQQK 73 (87)
T ss_dssp ------CTTTHHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTTTT-BSCCCCCCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhhccch-HHHHHHHHhcHHhHHHHHH
Confidence 3445555555433 666777777887777777765 555688899999999997 2333444555555555544
Q ss_pred HHHHHHHHHhhH
Q 002807 514 FAGNLKQAAESD 525 (878)
Q Consensus 514 ~~~~L~~A~~sD 525 (878)
.|+++...|
T Consensus 74 ---ql~q~~a~~ 82 (87)
T 1fzc_A 74 ---QLEQVIAKD 82 (87)
T ss_dssp ---HHHHHHHTC
T ss_pred ---HHHHHhhhc
Confidence 444444433
No 83
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=27.49 E-value=3.8e+02 Score=27.66 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002807 566 DAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRK 599 (878)
Q Consensus 566 ~~~v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ 599 (878)
...+..++.+++++-+|.+.|..+.+=|+.++.+
T Consensus 227 e~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~ 260 (268)
T 3id6_A 227 EDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKE 260 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888889999999999999999999988754
No 84
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=26.89 E-value=3.6e+02 Score=24.51 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHH
Q 002807 127 EKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFA 169 (878)
Q Consensus 127 Eka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~ 169 (878)
..+.+++++|.++...+ ....|..+|++|-.++.
T Consensus 24 ~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~ 57 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMD---------RFDEARASFQALQQQAQ 57 (203)
T ss_dssp THHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---------cHHHHHHHHHHHHHHHH
Confidence 35678888888887543 36788888888776663
No 85
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=26.73 E-value=2.3e+02 Score=30.20 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHH
Q 002807 124 IHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYL 171 (878)
Q Consensus 124 l~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l 171 (878)
-..+.+..++++|..+...+ ....|..+|++|..++...
T Consensus 218 ~~~~~a~~~~~~g~~~~~~g---------~~~~Ai~~y~kAl~~~~~~ 256 (370)
T 1ihg_A 218 KILLISEDLKNIGNTFFKSQ---------NWEMAIKKYTKVLRYVEGS 256 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHhhcC
Confidence 35567777888887776443 3688999999987766553
No 86
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=26.65 E-value=5.6e+02 Score=27.95 Aligned_cols=36 Identities=3% Similarity=0.023 Sum_probs=30.7
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHh
Q 002807 266 YAEACYRYSLELHEKEEIAEEIARLKSGISALTEAK 301 (878)
Q Consensus 266 ~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~ 301 (878)
.|.+++-.|..+...+++.+|+..|+.|...++...
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 466677778888888999999999999999998774
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.17 E-value=7.2e+02 Score=27.74 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHhccccccCC
Q 002807 686 INEGLKFYVTLQDAITNIKQQCSD----FVMTRNIQCREMIEDVQRQMAGLNFQD 736 (878)
Q Consensus 686 l~eG~~FY~~L~~~l~~l~~~v~d----f~~~R~~E~~~L~~~l~~~~~~~~~~~ 736 (878)
+..|......+...+..+...+.. .-..|+.....+...+...+..+.+..
T Consensus 304 l~~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~R~~~~~~l~~~i~~~l~~l~~~~ 358 (517)
T 4ad8_A 304 LEEDERDAGSLQADVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPH 358 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344444455555555555444433 335577777788888888888776653
No 88
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=25.99 E-value=6.3e+02 Score=26.98 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002807 569 VGALKQSLRQLETLGAQRAGLEDMLKEMK 597 (878)
Q Consensus 569 v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~ 597 (878)
...|...-+-+.+|...|..++..+...+
T Consensus 83 ~~~l~~f~~~~~ei~~~~~~l~~~~~~~~ 111 (385)
T 2q13_A 83 SSTLQQFSKVIDELSSCHAVLSTQLADAM 111 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777777776653
No 89
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=25.75 E-value=3.2e+02 Score=27.14 Aligned_cols=121 Identities=10% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCchHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 397 RTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEEL 476 (878)
Q Consensus 397 r~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~ 476 (878)
+..+.++-.++..|++.|..+++-..|.. ....||+ .-..|...+..-.+...++-+.++.+..+
T Consensus 15 ~~~~~~iG~ltR~Lh~sl~~l~~d~~l~~--a~~~ipd-------------A~~rL~~Vv~~TE~AA~~iLd~vE~~~~~ 79 (214)
T 1kmi_Z 15 GDIIARIGSLTRMLRDSLRELGLDQAIAE--AAEAIPD-------------ARDRLYYVVQMTAQAAERALNSVEASQPH 79 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHH--TTTTHHH-------------HHHHTTTHHHHHHHTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCChHhHH--HHHHhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHH-HHHHhhHHHHHHHH
Q 002807 477 LQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNL-KQAAESDARIERSV 532 (878)
Q Consensus 477 L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L-~~A~~sD~~v~~k~ 532 (878)
.+.=+..-..++.++..--.++.+..-.+.+..++..|...+ +.....+..+.+-+
T Consensus 80 ~~~l~~~~~~l~~~w~~l~~~~~~~~~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm 136 (214)
T 1kmi_Z 80 QDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNAQLLKIM 136 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 90
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=25.40 E-value=5.3e+02 Score=28.23 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHH
Q 002807 129 AAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAA 164 (878)
Q Consensus 129 a~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~A 164 (878)
+.+++++|.+|...+ ....|..+|++|
T Consensus 137 ~~a~~~lg~~~~~~g---------~~~~A~~~~~~a 163 (474)
T 4abn_A 137 VEAWNQLGEVYWKKG---------DVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHHHT---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---------CHHHHHHHHHHH
Confidence 346677777776553 356677777665
No 91
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.99 E-value=3e+02 Score=23.66 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHH
Q 002807 671 QIQAAIAKYREIKENIN 687 (878)
Q Consensus 671 ~L~~A~~~y~el~~nl~ 687 (878)
-|..-++.|..|.+.+.
T Consensus 52 ~l~~~h~~FiaLAa~l~ 68 (93)
T 3t98_B 52 AMQKIYQTFVALAAQLQ 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555543
No 92
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.41 E-value=5.8e+02 Score=28.47 Aligned_cols=81 Identities=7% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhH---
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESD--- 525 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD--- 525 (878)
++.|+..+++|..........+..+...|+..+..=..+. .....+..+|++...++++....+
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~-------------n~~~~~~~~~e~~~~~i~~~~~~~~~~ 168 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDND-------------IILSEYNTEMELHYNYIKDNLDNNIPS 168 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchh-------------hHHHHHHHHHHHHHHHHHHHHhccchh
Q ss_pred --HHHHHHHHHhHHHHhhc
Q 002807 526 --ARIERSVRDHSALMSIL 542 (878)
Q Consensus 526 --~~v~~k~~~~~~~l~~L 542 (878)
..|...++.....|..|
T Consensus 169 ~i~~L~~~~~~l~~ki~~l 187 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 93
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=23.41 E-value=6.2e+02 Score=28.91 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 573 KQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEF 652 (878)
Q Consensus 573 r~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f 652 (878)
..+...+++|..--..++.+|+....+.. ....-++|.+....|..+...+. +......+++.+...+..|
T Consensus 237 ~~iF~ni~~I~~~h~~fL~~L~~~~~~~~--------~~~ig~if~~~~~~f~~Y~~Y~~-n~~~a~~~l~~~~~~~~~f 307 (587)
T 3ky9_A 237 EIIFINIEDLLRVHTHFLKEMKEALGTPG--------AANLYQVFIKYKERFLVYGRYCS-QVESASKHLDRVAAAREDV 307 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSST--------TCSHHHHHHHTTTGGGHHHHHHH-HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHhccC--------ccHHHHHHHHHHHhcchHHHHHh-ChHHHHHHHHHHHhcCHHH
Confidence 34556666666655668888887655421 11234566665555555544443 3334456666666666666
Q ss_pred HHhhhc-hh--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Q 002807 653 SAIFNL-ED--------YRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMT--RNIQCREM 721 (878)
Q Consensus 653 ~~~~~~-~~--------~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~--R~~E~~~L 721 (878)
...-+. .. ...=--.=+|+|..=--.+.+|..+..+. .=|.+|...+..+.. +.+.++. |+.|...-
T Consensus 308 ~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~~~-~d~~~L~~Al~~i~~-v~~~iNe~~r~~e~~~~ 385 (587)
T 3ky9_A 308 QMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEA-MEKENLRLALDAMRD-LAQCVNEVKRDNETLRQ 385 (587)
T ss_dssp HTTTTHHHHHHHSSSCCHHHHHHHHHHHHTTHHHHHHHHHHTCCCH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCHHHHHhHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 532210 00 00000011344433333455555555433 446777777666663 3344444 33444444
Q ss_pred HHHHHHhccccc
Q 002807 722 IEDVQRQMAGLN 733 (878)
Q Consensus 722 ~~~l~~~~~~~~ 733 (878)
+..|+..+.+..
T Consensus 386 l~~lq~~i~~~~ 397 (587)
T 3ky9_A 386 ITNFQLSIENLD 397 (587)
T ss_dssp HHHHHHHEETCC
T ss_pred HHHHHHHhhcCc
Confidence 556777776643
No 94
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.25 E-value=2.9e+02 Score=29.93 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 671 QIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQC 718 (878)
Q Consensus 671 ~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~ 718 (878)
+|..-.+.=..|...|..-...|..+...++.|+-.+..++..|..-.
T Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~ 260 (373)
T 3hhm_B 213 RISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYL 260 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 333333344455556666667778888888888887776666555433
No 95
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=23.19 E-value=3.5e+02 Score=23.03 Aligned_cols=37 Identities=5% Similarity=0.131 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 614 EDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSA 654 (878)
Q Consensus 614 e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f~~ 654 (878)
-......++++..+...|. .....+..|...-..+..
T Consensus 35 ~~~v~~~l~~h~~l~~ei~----~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLT----AHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHH
Confidence 4456667777776665554 445566666666556544
No 96
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=22.60 E-value=5.4e+02 Score=28.63 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEAT 482 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ 482 (878)
++.|+..|++|......+.+.+..++..+...+.
T Consensus 97 l~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~ 130 (461)
T 3ghg_B 97 VDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQK 130 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccC
Confidence 6667777777777777777777777776666543
No 97
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=22.50 E-value=4.7e+02 Score=28.52 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHH
Q 002807 124 IHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGA 167 (878)
Q Consensus 124 l~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~ 167 (878)
..-+.+..++|.|.++...+ ....|..+|++|..+
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g---------~~~~A~~~y~~Al~~ 297 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGG---------KYMQAVIQYGKIVSW 297 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHH
Confidence 34567788889988887543 368888999887654
No 98
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=22.49 E-value=96 Score=27.09 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 002807 466 NQELLVQTEELLQK 479 (878)
Q Consensus 466 ~~~~L~e~~~~L~~ 479 (878)
+...|+++.++|+.
T Consensus 43 ie~~l~EA~ell~q 56 (102)
T 1vcs_A 43 VEKQLEEARELLEQ 56 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 99
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=22.48 E-value=1.9e+02 Score=26.87 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHH
Q 002807 673 QAAIAKYREIKENINEGLKFYVTLQDAIT--NIKQQCSDFVMTRNIQCREMIEDVQ 726 (878)
Q Consensus 673 ~~A~~~y~el~~nl~eG~~FY~~L~~~l~--~l~~~v~df~~~R~~E~~~L~~~l~ 726 (878)
...++..++|......|..+|....+.+. .|+.....|...|+.-..+|...|.
T Consensus 10 ~~~i~~Ln~Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~ 65 (153)
T 4etr_A 10 DDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVL 65 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888889999999999888775 4554444555555554555544444
No 100
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=22.19 E-value=2e+02 Score=34.01 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----------CchhHHhhcCCChHHHHHHHHhhhhHH--HHHHHHHHH
Q 002807 570 GALKQSLRQLETLGAQRAGLEDMLKEMKRKD-----------DILPKLMTSAGSYEDLFRKEISKYDHI--CEEIAQNIE 636 (878)
Q Consensus 570 ~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~d-----------dI~~kLi~~~~~~e~lf~~eL~kf~~l--~~~I~~~~~ 636 (878)
..|-.+-..++++.++|..+...|+....+. .|...++.+..+.+. .++-.+||..+ ..+++..+.
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~~l~~~yg~l~il~~l~~~~~ 88 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEG-LEQLRAKYGDLQILNKLEKVAV 88 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHSCSSHHH-HHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccccHHH-HHHHHHHcCCcHHHHHHHHHHH
Confidence 3444556678888999998888887654321 133444444333322 22223466544 344555555
Q ss_pred HHHHHHHHHHH
Q 002807 637 AQEQLLMQIQA 647 (878)
Q Consensus 637 ~Q~~Ll~~I~~ 647 (878)
.|+.+-..+..
T Consensus 89 ~~~~~~~~~~~ 99 (706)
T 3fhn_A 89 QQTQMQAGVDK 99 (706)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 101
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.98 E-value=3.6e+02 Score=22.69 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 449 PAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARI 528 (878)
Q Consensus 449 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v 528 (878)
+..|+..+..+..=+.+....++.+...+++ ||.||.+- -..-...-.++..+++.+..|.-+-..+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~ed-------fk~KyE~E------~~~R~~~E~d~~~LrkdvD~a~l~r~dL 68 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMR-------LREKLQEE------MLQREEAENTLQSFRQDVDNASLARLDL 68 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH------HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHhhc
Q 002807 529 ERSVRDHSALMSIL 542 (878)
Q Consensus 529 ~~k~~~~~~~l~~L 542 (878)
..+++.-.+-|..|
T Consensus 69 E~kvesL~eEl~fL 82 (86)
T 3swk_A 69 ERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 102
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=21.90 E-value=1.1e+03 Score=28.17 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 569 VGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQ 648 (878)
Q Consensus 569 v~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~ 648 (878)
..+|.+++.+...-..+...-+++....+..+++.. ..-.-.+..++++..+...|......=..+....+..
T Consensus 365 ~~~Le~l~~~F~~~~~~~~~Wl~~~e~~l~~~~~g~-------~dl~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L 437 (863)
T 1sjj_A 365 LERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYET-------ATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQEL 437 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTS-------SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807 649 NEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVM 712 (878)
Q Consensus 649 n~~f~~~~~~~~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~ 712 (878)
... .......+....+.+.+++..-.+...+=+..|.+.++++..+.+....+..++.++..
T Consensus 438 ~~~--~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a~~~~~ 499 (863)
T 1sjj_A 438 NEL--DYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNN 499 (863)
T ss_dssp HHT--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HhC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 103
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.84 E-value=3.8e+02 Score=23.31 Aligned_cols=104 Identities=12% Similarity=0.215 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHH
Q 002807 431 TLPADLKEEVEAVQISG-GPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQD 509 (878)
Q Consensus 431 ~lP~~l~~~~~~i~~~g-g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~ 509 (878)
.+|+.+.+.+..++... -+..+...+..+..-...+...++++..+ + +|..+-..-|...-..+-+++...+..
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l-~----~d~~vy~~iG~vfv~~~~~ea~~~L~~ 77 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL-P----DDAVVYKTVGTLIVKTTKDKAVAELKE 77 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C----TTCCEEEEETTEEEEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C----CCcHhHHHhhHHHhhccHHHHHHHHHH
Confidence 46777777766665421 12333333333333333333333332221 1 222233445554445566778888888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 002807 510 RLNRFAGNLKQAAESDARIERSVRDHSALM 539 (878)
Q Consensus 510 ~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l 539 (878)
+++.+...++.-...=..+...+.+.+..|
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777766665556666666655544
No 104
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=21.83 E-value=3.8e+02 Score=25.49 Aligned_cols=120 Identities=19% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002807 131 VLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVF 210 (878)
Q Consensus 131 VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~ 210 (878)
+++++|.++...+. ...|...|++| ..++++...++..+.....+.--+
T Consensus 7 ~~~~lg~~~~~~g~---------~~~A~~~~~~a----------------------l~~~p~~~~a~~~lg~~~~~~g~~ 55 (217)
T 2pl2_A 7 NPLRLGVQLYALGR---------YDAALTLFERA----------------------LKENPQDPEALYWLARTQLKLGLV 55 (217)
T ss_dssp HHHHHHHHHHHTTC---------HHHHHHHHHHH----------------------HTTSSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCC---------HHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHcCCH
Q ss_pred HHHHh--------cCCCccHHHHHHHHHHHH-------------HHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHH
Q 002807 211 ENTIA--------KGSTPGVCAKISRQVGLY-------------YEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEA 269 (878)
Q Consensus 211 ~Ka~~--------~~~k~~liAKLA~qv~~~-------------Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~f~A~A 269 (878)
.+|+. +.........|+.-.... |++|...+..+ ++..=-.+.+
T Consensus 56 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---------------l~~~P~~~~~ 120 (217)
T 2pl2_A 56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA---------------ERVNPRYAPL 120 (217)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---------------HHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH---------------HHhCcccHHH
Q ss_pred HHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 270 CYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 270 ~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
++..|..+...+++.+|+..|+.|.+.
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc
No 105
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=21.62 E-value=1.4e+02 Score=26.20 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 002807 668 CYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQ 728 (878)
Q Consensus 668 ~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~ 728 (878)
++..+..|+..|..-...+.+|..|-+.- ..++.|-|+.-.....+|..++...
T Consensus 2 a~~nit~a~~~~n~Ai~~~~~gf~tv~~A-------l~kiQdVVN~q~~aLs~ll~QLn~N 55 (109)
T 2ieq_A 2 AINNIVASFSSVNDAITQTAEAIHTVTIA-------LNKIQDVVNQQGSALNHLTSQLRHN 55 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCC---
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35677888888888888888888875433 3344445555445555565555443
No 106
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=21.37 E-value=2e+02 Score=27.66 Aligned_cols=48 Identities=6% Similarity=0.094 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002807 671 QIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQC 718 (878)
Q Consensus 671 ~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~ 718 (878)
.|..-.+.=..|...|..-...+..|...++.|.-.+......|..-.
T Consensus 104 RL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl 151 (170)
T 3l4q_C 104 RIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333333334455566666667777777777877777666655444433
No 107
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=21.20 E-value=6.2e+02 Score=26.12 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHH
Q 002807 124 IHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGA 167 (878)
Q Consensus 124 l~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~ 167 (878)
..-+.+.+++|+|.+|...+. ...|..+|++|..+
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~---------~~~A~~~y~~Al~~ 176 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGK---------YKQALLQYKKIVSW 176 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHH
Confidence 355678899999999886543 67888888887543
No 108
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=21.16 E-value=7.9e+02 Score=26.38 Aligned_cols=151 Identities=13% Similarity=0.171 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCChHHHHHHHH---------hhhhHHHHHHHHHHHHHHHHH
Q 002807 572 LKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEI---------SKYDHICEEIAQNIEAQEQLL 642 (878)
Q Consensus 572 Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~e~lf~~eL---------~kf~~l~~~I~~~~~~Q~~Ll 642 (878)
+..++..+++|..--..++..|+....+.... ...-++|.+.+ +.|..++..-. .-..++
T Consensus 104 ~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~-------~~ig~ifl~~~~~~~~~~~~~~Y~~Y~~n~~----~a~~~l 172 (418)
T 3t06_A 104 LARLFPNLPELIEIHNSWCEAMKKLREEGPII-------KEISDLMLARFDGPAREELQQVAAQFCSYQS----IALELI 172 (418)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHHGGGCSSC-------CCCHHHHHHHHSTHHHHHHHHHHHHHHHTHH----HHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHhcCCCc-------CcHHHHHHHhcchhhhHHHhhhhHHHhhhHH----HHHHHH
Confidence 45566666777666666888887765443211 01233444332 34555554322 233555
Q ss_pred HHHHHHHHHHHHhhh---chh--HHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002807 643 MQIQAQNEEFSAIFN---LED--YRASREK----CYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMT 713 (878)
Q Consensus 643 ~~I~~~n~~f~~~~~---~~~--~~~~re~----~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~ 713 (878)
+.....+..|....+ ... ..-.-.. =+|+|..=--.+.+|..+..++..=|.+|...+..+.. +-..++.
T Consensus 173 ~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~-v~~~iN~ 251 (418)
T 3t06_A 173 KTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCRE-ILKYVNE 251 (418)
T ss_dssp HHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhCcccccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH-HHHHHHH
Confidence 555554554443211 000 0000111 13555444445667777766666667777777776653 3344444
Q ss_pred h--HHHHHHHHHHHHHhcccccc
Q 002807 714 R--NIQCREMIEDVQRQMAGLNF 734 (878)
Q Consensus 714 R--~~E~~~L~~~l~~~~~~~~~ 734 (878)
. +.|...-+..|+..+....+
T Consensus 252 ~~~~~e~~~~l~~i~~~l~~~~~ 274 (418)
T 3t06_A 252 AVKQTENRHRLEGYQKRLDATAL 274 (418)
T ss_dssp HHHHHHHHHHHHHHHHSEECCTT
T ss_pred HHHHHHHHHHHHHHHHHhCcccc
Confidence 3 33444446677777765443
No 109
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=21.13 E-value=1e+02 Score=26.23 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHHhHhhhhhhchHHHHHHHHHHHHHHH
Q 002807 267 AEACYRYSLELHEKEEIAEEIARLKSGISALT 298 (878)
Q Consensus 267 A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~ 298 (878)
+.-||..|..+.+.+.|..||.||+.|.+...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 45577788888888899999999988877764
No 110
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=21.04 E-value=4.7e+02 Score=27.82 Aligned_cols=34 Identities=15% Similarity=-0.034 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHH
Q 002807 129 AAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYL 171 (878)
Q Consensus 129 a~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l 171 (878)
+.++.++|.++...|. .++|..+|++|--++.-.
T Consensus 51 a~~yn~Lg~~~~~~G~---------~~eAl~~~~kAl~~~~~~ 84 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ---------NEAALECLRKAEELIQQE 84 (472)
T ss_dssp CHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHhc
Confidence 4445567888876553 689999999997776543
No 111
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=20.99 E-value=2.5e+02 Score=23.15 Aligned_cols=47 Identities=11% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Q 002807 679 YREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGL 732 (878)
Q Consensus 679 y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~~~~~~ 732 (878)
|.....++.+|.. .+..-..+|.|-+++.......|..+|...|...
T Consensus 14 FN~A~~~i~~g~~-------tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAI 60 (77)
T 2bez_C 14 FNKAISQIQESLT-------TTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAI 60 (77)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444555555543 4455566788888888888888888887766543
No 112
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.96 E-value=2.1e+02 Score=24.62 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=10.7
Q ss_pred HHHHHHHHH-HHHHHHHHH
Q 002807 505 KNLQDRLNR-FAGNLKQAA 522 (878)
Q Consensus 505 ~~l~~~l~k-~~~~L~~A~ 522 (878)
+.++.+|++ ++.-|++..
T Consensus 75 r~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 75 REWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 456666666 666655443
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=20.93 E-value=3.6e+02 Score=24.50 Aligned_cols=95 Identities=8% Similarity=-0.093 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH-------HHHHHHHHhcCCCc-cHHHH--HHHHHHHHHHHHHHHhhcCCCCCcchHhHHH
Q 002807 187 VDISVECAGMLERLMLAQAQ-------ECVFENTIAKGSTP-GVCAK--ISRQVGLYYEEALGALTVAPLKDHFDKAWVT 256 (878)
Q Consensus 187 ~Dls~~~L~~L~~lmLAQAQ-------Ec~~~Ka~~~~~k~-~liAK--LA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~ 256 (878)
..++++...++..+-.+..+ .-.|++++.-...+ ..... .+......|++|...+..+... -+.+
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~--- 103 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKND--- 103 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSC---
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCC---
Confidence 46778888877766554433 22335666544322 22111 2222233445555444322100 0001
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 002807 257 HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISA 296 (878)
Q Consensus 257 ~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~ 296 (878)
+.++|..|..+...+++.+|+..|+.|...
T Consensus 104 ----------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 104 ----------YTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ----------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 224555666666777788888888777654
No 114
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.76 E-value=8.8e+02 Score=26.81 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 002807 458 QLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSA 537 (878)
Q Consensus 458 ~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~ 537 (878)
.|.+-.+.+...|+++.+.|++=.+ .+.....-++.-.+.+++.+.++.+.|..+.+-.++.+.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~----------------s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ 118 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQN----------------KYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRR 118 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHh----------------hcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3455566777788888887776322 122334445566666788889999998877766666555
Q ss_pred HHhhcC
Q 002807 538 LMSILD 543 (878)
Q Consensus 538 ~l~~L~ 543 (878)
.|..|.
T Consensus 119 ri~yIK 124 (491)
T 1m1j_A 119 RIVTLK 124 (491)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 115
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.68 E-value=4.1e+02 Score=22.90 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002807 663 ASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREM 721 (878)
Q Consensus 663 ~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L 721 (878)
..-+..+..|..=.-........+++-..+|..|++.|+.++..=...-.-|..-+..|
T Consensus 34 ssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~ALdaLR~eH~~Kl 92 (98)
T 3f1i_H 34 SAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEHREKL 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888899999999999999999998865433333344433333
No 116
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=20.63 E-value=2.9e+02 Score=24.58 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCC
Q 002807 432 LPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT 493 (878)
Q Consensus 432 lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~ 493 (878)
+-++|..+++.++.+ +...++.|.-|..++++.+.+ |..-|-.-|-++|+=-|+
T Consensus 23 vsedLrrrIe~LkrK-----V~~Qvq~i~~Lq~nVrdQvve---MkRLEVDIDIKiRsCKGS 76 (119)
T 1lwu_A 23 VLRELERRIIHLQRR-----INMQLQQLTLLQHNIKTQVSQ---ILRVEVDIDVALRACKGS 76 (119)
T ss_dssp HHTTTHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhhccch
Confidence 556778888888765 777888888888888887776 455688899999999997
No 117
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=20.59 E-value=7.2e+02 Score=25.69 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=7.1
Q ss_pred HHHHhhHHHHHHHHH
Q 002807 383 KALSRYTEMVDDVIR 397 (878)
Q Consensus 383 ea~s~Y~e~k~~lvr 397 (878)
...+.|..+-...|+
T Consensus 24 K~s~~~~Ke~~~flk 38 (279)
T 3qwe_A 24 KTWSRYAKELLAWTE 38 (279)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555444443
No 118
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=20.45 E-value=2.8e+02 Score=25.57 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhc
Q 002807 570 GALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTS 609 (878)
Q Consensus 570 ~~Lr~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~ 609 (878)
..-++++++|+.++-|=..+..++.+...=.||+..|...
T Consensus 49 ~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAV 88 (136)
T 4adz_A 49 KQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSAS 88 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445678888888888888888886643334566555443
No 119
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.32 E-value=3.7e+02 Score=22.30 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCCCCCchHhH---HHHHHHHHHHHHHHHHHHh
Q 002807 451 ALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLT---KNLQDRLNRFAGNLKQAAE 523 (878)
Q Consensus 451 ~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W~r~~S~~l~---~~l~~~l~k~~~~L~~A~~ 523 (878)
.|+..-..+...+..+.++|..+...++.=. ..|....+.... ..++..+.++...|..-..
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~-----------~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~ 76 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVID-----------ENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQ 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555444421 258877765332 2344455555555544433
Done!