BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002808
(878 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 194/328 (59%), Gaps = 34/328 (10%)
Query: 69 VTVTVRFRPLSPREIRQGE--EIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYD 126
V V VR RPL+ RE GE ++ W D I + + + S + +DRVF TT++VY+
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKS--FNFDRVFHGNETTKNVYE 63
Query: 127 IAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM----------------------HTPNRE 164
A ++ A+ G NGTIFAYG T+SGKT+TM P+RE
Sbjct: 64 EIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDRE 123
Query: 165 FLLRVSYLEIYNEVVNDLL--NPAGQNLRIRED-SQGTFVEGVKEEVVLSPAHALSLIAA 221
FLLRVSY+EIYNE + DLL + L IRED ++ +V + EEVV + AL I
Sbjct: 124 FLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITK 183
Query: 222 GEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGE-AVNLSQLHLIDLAGSE-SSK 279
GE+ RH G T N SSRSHTIF + +ES GE S E +V +S L+L+DLAGSE +++
Sbjct: 184 GEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQ 243
Query: 280 AETTGVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSL 338
GVR KEG IN+SL LG VI KL+DG+ I YRDSKLTR+LQ+SL G+ + +
Sbjct: 244 TGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRI 303
Query: 339 ICTVTPXXXXXXXTHNTLKFAHRAKHIE 366
ICT+TP T L+FA AK+++
Sbjct: 304 ICTITPVSFDETLT--ALQFASTAKYMK 329
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 219 bits (558), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 182/333 (54%), Gaps = 36/333 (10%)
Query: 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDI 127
N+ V RFRPL+ E+ +G++ GE + P YA+DRVF +T+ VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---YAFDRVFQSSTSQEQVYND 64
Query: 128 AAQHVVSGAMDGINGTIFAYGVTSSGKTHTM----HTP---------------------- 161
A+ +V ++G NGTIFAYG TSSGKTHTM H P
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 162 NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED-SQGTFVEGVKEEVVLSPAHALSLIA 220
N EF ++VSY EIY + + DLL+ + NL + ED ++ +V+G E V SP + I
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 184
Query: 221 AGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SK 279
G+ +RHV TN N SSRSH+IF + ++ EN+ E +L+L+DLAGSE SK
Sbjct: 185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----ENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 280 AETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLI 339
G E INKSL LG VIS L +G +T++PYRDSK+TR+LQ SL G+ R +++
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIV 299
Query: 340 CTVTPXXXXXXXTHNTLKFAHRAKHIEILAAQN 372
+P T +TL F RAK I+ N
Sbjct: 300 ICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 219 bits (557), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 180/326 (55%), Gaps = 36/326 (11%)
Query: 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDI 127
N+ V RFRPL+ E+ +G++ GE + P YA+DRVF +T+ VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---YAFDRVFQSSTSQEQVYND 64
Query: 128 AAQHVVSGAMDGINGTIFAYGVTSSGKTHTM----HTP---------------------- 161
A+ +V ++G NGTIFAYG TSSGKTHTM H P
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 162 NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED-SQGTFVEGVKEEVVLSPAHALSLIA 220
N EF ++VSY EIY + + DLL+ + NL + ED ++ +V+G E V SP + I
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 184
Query: 221 AGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SK 279
G+ +RHV TN N SSRSH+IF + ++ EN+ E +L+L+DLAGSE SK
Sbjct: 185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----ENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 280 AETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLI 339
G E INKSL LG VIS L +G +T++PYRDSK+TR+LQ SL G+ R +++
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIV 299
Query: 340 CTVTPXXXXXXXTHNTLKFAHRAKHI 365
+P T +TL F RAK I
Sbjct: 300 ICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 218 bits (556), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 181/333 (54%), Gaps = 36/333 (10%)
Query: 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDI 127
N+ V RFRPL+ E+ +G++ GE + P YA+DRVF +T+ VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP---YAFDRVFQSSTSQEQVYND 64
Query: 128 AAQHVVSGAMDGINGTIFAYGVTSSGKTHTM----HTP---------------------- 161
A+ +V ++G NGTIFAYG TSSGK HTM H P
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 162 NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED-SQGTFVEGVKEEVVLSPAHALSLIA 220
N EF ++VSY EIY + + DLL+ + NL + ED ++ +V+G E V SP + I
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 184
Query: 221 AGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SK 279
G+ +RHV TN N SSRSH+IF + ++ EN+ E +L+L+DLAGSE SK
Sbjct: 185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----ENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 280 AETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLI 339
G E INKSL LG VIS L +G +T++PYRDSK+TR+LQ SL G+ R +++
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIV 299
Query: 340 CTVTPXXXXXXXTHNTLKFAHRAKHIEILAAQN 372
+P T +TL F RAK I+ N
Sbjct: 300 ICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 193/360 (53%), Gaps = 39/360 (10%)
Query: 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIA---YAYDRVFGPTTTT 121
+++++ V RFRPL+ E + G + E+ SIA Y +D+VF P +
Sbjct: 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNV---EENCISIAGKVYLFDKVFKPNASQ 65
Query: 122 RHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----------TP--------- 161
VY+ AA+ +V+ + G NGTIFAYG TSSGKTHTM P
Sbjct: 66 EKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNH 125
Query: 162 ------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED-SQGTFVEGVKEEVVLSPAH 214
N EF ++VSY EIY + + DLL+ + NL + ED ++ +V+G E V SP
Sbjct: 126 IYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPED 185
Query: 215 ALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAG 274
+I G+ +RH+ TN N SSRSH++F + ++ EN + +L+L+DLAG
Sbjct: 186 VFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ----ENLENQKKLSGKLYLVDLAG 241
Query: 275 SES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGH 333
SE SK G E INKSL LG VIS L DG THIPYRDSKLTR+LQ SL G+
Sbjct: 242 SEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGN 301
Query: 334 GRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIE-ILAAQNKLEDGQVKLQSRLEEEEDAK 392
R +++ +P T +TL F RAK ++ ++ +L + K + E+E++A+
Sbjct: 302 ARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNAR 361
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 175/333 (52%), Gaps = 34/333 (10%)
Query: 64 SSKENVTVTVRFRPLSPREIRQG-EEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTR 122
SS ++ V RFRP + EI G + I + +T + ++ +DRVF +
Sbjct: 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQS 62
Query: 123 HVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------------- 159
++D + + V ++G NGT+FAYG T +GK++TM
Sbjct: 63 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTS 122
Query: 160 ----TPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED-SQGTFVEGVKEEVVLSPAH 214
N E+ +RVSY+EIY E + DLL P NL + E+ ++G +V+G+ E V S
Sbjct: 123 ILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQE 182
Query: 215 ALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAG 274
++ G R V +TN N SSRSH+IF +TI SA QL L+DLAG
Sbjct: 183 VYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSG----QLFLVDLAG 238
Query: 275 SES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGH 333
SE K +G +E INKSL LG VI+ LTDG+++H+PYRDSKLTR+LQ SL G+
Sbjct: 239 SEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGN 298
Query: 334 GRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIE 366
R +LI +P T +TL+F RAK I+
Sbjct: 299 SRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 191/359 (53%), Gaps = 55/359 (15%)
Query: 65 SKENVTVTVRFRPLSPRE--IRQGEEIAWYADGETILRNEDNPSIA--YAYDRVFGPTTT 120
S +N+ V VR RPL+ RE IR E + E + R+ + + + +DR FGP +
Sbjct: 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESK 80
Query: 121 TRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---------------------- 158
VY + ++ ++G N T+FAYG T +GKTHTM
Sbjct: 81 QCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIP 140
Query: 159 ----HTPNR------EFLLRVSYLEIYNEVVNDLLNPAGQN-LRIREDSQ---GTFVEGV 204
H + E+ +R+SYLE+YNE + DLL+ +RI +DS ++G+
Sbjct: 141 RALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGL 200
Query: 205 KEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI---ESSPCGENSAGEA 261
+E V S L+ G+E R +T N SSRSHT+F++ + E+ GE +
Sbjct: 201 EEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE----DM 256
Query: 262 VNLSQLHLIDLAGSE--SSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRD 319
+ + +L+L+DLAGSE S G+R +E IN+SLLTLG VI+ L D RA H+PYR+
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRE 315
Query: 320 SKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIEILAAQNKLEDGQ 378
SKLTRLLQ SL G + S+I T++P T +TL++AHRAK+I QNK E Q
Sbjct: 316 SKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNI-----QNKPEVNQ 369
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 179/339 (52%), Gaps = 41/339 (12%)
Query: 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNP------------SIAYAYD 112
S +N+ V VR RPL+ RE R+ D + D P + +D
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 113 RVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM-------------- 158
V+ T+ ++ + + ++ ++G N TIFAYG T +GKT TM
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 159 ---------HTPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED-SQGTFVEGVKEEV 208
+ N+ FL+ SYLE+YNE + DL+ L ++ED ++G +V+G+
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHR 180
Query: 209 VLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268
V + A +L+ G +RHV +T N SSRSH+IF + IE S EN E + + +L+
Sbjct: 181 VTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK--EVIRVGKLN 238
Query: 269 LIDLAGSE-SSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQ 327
L+DLAGSE SK TG EG+ IN SL LG VISKL +G ATHIPYRDSKLTRLLQ
Sbjct: 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-ATHIPYRDSKLTRLLQ 297
Query: 328 SSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIE 366
SL G+ + + ++P T +TL++A RAK I+
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/373 (35%), Positives = 188/373 (50%), Gaps = 54/373 (14%)
Query: 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYAD---GETILRNEDNPS----IAYAYDRVFG 116
S E+V V VR RP++ +E + D G+ ++N + + +D V+
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYD 77
Query: 117 PTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM------------------ 158
+YD + +V + G NGTIFAYG T +GKT+TM
Sbjct: 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFD 137
Query: 159 -------HTPNREFLLRVSYLEIYNEVVNDLLNPAGQN---LRIREDSQGTFVEGVKEEV 208
+ N+++L+R SYLEIY E + DLL+ L+ R D+ G +V+ + V
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDT-GVYVKDLSSFV 196
Query: 209 VLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268
S ++ G ++R VG+TN N SSRSH IF +TIE S G + + + +L+
Sbjct: 197 TKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH-IRVGKLN 255
Query: 269 LIDLAGSE-SSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQ 327
L+DLAGSE +K G R KE + IN SL LG VIS L DG++THIPYRDSKLTRLLQ
Sbjct: 256 LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQ 315
Query: 328 SSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEE 387
SL G+ + ++ V P T TL++A+RAK+I +++
Sbjct: 316 DSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNI----------------KNKPRV 359
Query: 388 EEDAKSALLSRIQ 400
ED K ALL Q
Sbjct: 360 NEDPKDALLREFQ 372
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 174/346 (50%), Gaps = 51/346 (14%)
Query: 69 VTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIA----------YAYDRVFGPT 118
V V VR RP++ RE + D ++ N N +++ +AYD F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 119 TTTRH--------VYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM------------ 158
+ V+ ++++ A DG N IFAYG T SGK++TM
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 159 ------------HTPNREFLLRVSYLEIYNEVVNDLLNPAG--QNLRIREDSQ-GTFVEG 203
+ F + VSY+EIYNE V DLL+P G Q L++RE S G +V+G
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDG 182
Query: 204 VKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVN 263
+ + V S SL++ G + R V +TN N SSRSH +F +T+ + S
Sbjct: 183 LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEK 242
Query: 264 LSQLHLIDLAGSE-SSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA-----THIPY 317
+ +L L+DLAGSE ++K G R KEGS INKSL TLG VIS L D A +PY
Sbjct: 243 VGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPY 302
Query: 318 RDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAK 363
RDS LT LL+ SL G+ + +++ TV+P T +TL++A RAK
Sbjct: 303 RDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 175/344 (50%), Gaps = 48/344 (13%)
Query: 63 PSSKE-NVTVTVRFRPLSPREIRQGEEIAWYAD---GETILRNEDNPSIAYAYDRVFGPT 118
P ++E V V +R RPL P+E+ G + + G L + + + + V
Sbjct: 6 PGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH----FGFHVVLAED 61
Query: 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH--------------TPNR- 163
VY Q ++ +G N T+FAYG T SGKT+TM P
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAM 121
Query: 164 -------------EFLLRVSYLEIYNEVVNDLL--NPAGQNLRIREDSQGTFV-EGVKEE 207
+ L+ VSYLE+Y E DLL A +++++RED +G V GVKE
Sbjct: 122 AEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEV 181
Query: 208 VVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIE-----SSPCGENSAGEAV 262
V LSL+ G RH G+T+ N LSSRSHT+FT+T+E S + G+ +
Sbjct: 182 DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241
Query: 263 NLSQLHLIDLAGSESS-KAETTGVRRKEGSYINKSLLTLGTVISKLTDG--RATHIPYRD 319
+S+ H +DLAGSE K +TG R KE IN SLL LG VIS L D R +HIPYRD
Sbjct: 242 -VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRD 300
Query: 320 SKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAK 363
SK+TR+L+ SL G+ + +I V+P T NTL +A RA+
Sbjct: 301 SKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 185/365 (50%), Gaps = 66/365 (18%)
Query: 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYAD---GETILRNEDNPSIA-------YAYDR 113
+ E + V R RPLS +E G E D G+ LRN P A + +D
Sbjct: 18 GASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRN---PRAAPGELPKTFTFDA 74
Query: 114 VFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-------------- 159
V+ ++ +YD + ++ + G NGT+FAYG T +GKT+TM
Sbjct: 75 VYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPN 134
Query: 160 -----------TPNREFLLRVSYLEIYNEVVNDLLNP-AGQNLRIREDSQ-GTFVEGVKE 206
+ N+++L+R SYLEIY E + DLL+ G+ L ++E+ + G +++ +
Sbjct: 135 AFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSS 194
Query: 207 EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQ 266
V + ++ G + R VGST+ N +SSRSH IF +T+E S G + + + + +
Sbjct: 195 FVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQ-DHIRVGK 253
Query: 267 LHLIDLAGSE---SSKAETTGV----------------------RRKEGSYINKSLLTLG 301
L+L+DLAGSE + T G R KE S IN SL LG
Sbjct: 254 LNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALG 313
Query: 302 TVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHR 361
VI+ L R+THIPYRDSKLTRLLQ SL G+ + ++ T+ P + +TL+FA+R
Sbjct: 314 NVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 373
Query: 362 AKHIE 366
AK+I+
Sbjct: 374 AKNIK 378
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 175/344 (50%), Gaps = 48/344 (13%)
Query: 63 PSSKE-NVTVTVRFRPLSPREIRQGEEIAWYAD---GETILRNEDNPSIAYAYDRVFGPT 118
P ++E V V +R RPL P+E+ G + + G L + + + + V
Sbjct: 6 PGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH----FGFHVVLAED 61
Query: 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH--------------TPNR- 163
VY Q ++ +G N T+FAYG T SGKT+TM P
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAM 121
Query: 164 -------------EFLLRVSYLEIYNEVVNDLL--NPAGQNLRIREDSQGTFV-EGVKEE 207
+ L+ VSYLE+Y E DLL A +++++RED +G V GVKE
Sbjct: 122 AEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEV 181
Query: 208 VVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIE-----SSPCGENSAGEAV 262
V LSL+ G RH G+T+ N LSSRSHT+FT+T++ S + G+ +
Sbjct: 182 DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLL 241
Query: 263 NLSQLHLIDLAGSESS-KAETTGVRRKEGSYINKSLLTLGTVISKLTDG--RATHIPYRD 319
+S+ H +DLAGSE K +TG RKE IN SLL LG VIS L D R ++IPYRD
Sbjct: 242 -VSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRD 300
Query: 320 SKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAK 363
SK+TR+L+ SL G+ + +I V+P T NTL +A RA+
Sbjct: 301 SKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 54/348 (15%)
Query: 67 ENVTVTVRFRPL-------SPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTT 119
+N+ V VR RP S I + + + T + + Y +D VFG +T
Sbjct: 17 KNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 120 TTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE------------ 164
VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGII 136
Query: 165 -----------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIREDSQ---GTFV 201
F ++VS LEIYNE + DLLNP+ + L++ +D + G +
Sbjct: 137 PRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 202 EGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI---ESSPCGENSA 258
+G++E V + ++ G R +T N SSRSH++F++TI E++ GE
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE--- 253
Query: 259 GEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPY 317
E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+ L + R H+PY
Sbjct: 254 -ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPY 311
Query: 318 RDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
R+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 172 bits (436), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 246 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 302 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 246 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 302 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 126 TWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 246 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 302 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 126 TWEEDPLDGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 246 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 302 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 68 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 127
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 128 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 187
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 188 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 247
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 248 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 303
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 304 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 65 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 124
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 125 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 184
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 185 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 244
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 245 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 300
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 301 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 176
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 177 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 236
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 237 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 292
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 293 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 47/299 (15%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM---HTPNRE- 164
Y +D VFG +T VY ++ + G N TIFAYG T +GKT TM +PN E
Sbjct: 51 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 110
Query: 165 ----------------------------FLLRVSYLEIYNEVVNDLLNPAG---QNLRIR 193
F ++VS LEIYNE + DLLNP+ + L++
Sbjct: 111 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 170
Query: 194 EDSQ---GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTI-- 248
+D + G ++G++E V + ++ G R +T N SSRSH++F++TI
Sbjct: 171 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 230
Query: 249 -ESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISK 306
E++ GE E V + +L+L+DLAGSE+ ++ R +E IN+SLLTLG VI+
Sbjct: 231 KETTIDGE----ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 286
Query: 307 LTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
L + R H+PYR+SKLTR+LQ SL G R S+I T++P T +TL++AHRAK+I
Sbjct: 287 LVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 176/344 (51%), Gaps = 51/344 (14%)
Query: 71 VTVRFRPLSPREIRQG-------------------EEIAWYADGETILRN---EDNPSIA 108
V VR RP + +E G EE++++ +T +N + N +
Sbjct: 14 VVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLK 73
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM----HTPNRE 164
+ +D VF T+T V++ + ++ ++G N T+ AYG T +GKTHTM P
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 165 FLLR-------------------VSYLEIYNEVVNDLLNPAGQNLRIREDSQ-GTFVEGV 204
+L VSYLE+YNE + DLL +G L +RED+Q G V G+
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP-LAVREDTQKGVVVHGL 192
Query: 205 KEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264
S L L+ G ++R T+ N SSRSH +F + + S + V +
Sbjct: 193 TLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQD-KTASINQNVRI 251
Query: 265 SQLHLIDLAGSE-SSKAETTGVRRKEGSYINKSLLTLGTVISKLTDG--RATHIPYRDSK 321
+++ LIDLAGSE +S + G R EG+ IN+SLL LG VI+ L D + HIPYR+SK
Sbjct: 252 AKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSK 311
Query: 322 LTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
LTRLL+ SL G+ + +I V+P T+NTLK+A+RAK I
Sbjct: 312 LTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 172/340 (50%), Gaps = 46/340 (13%)
Query: 64 SSKENVTVTVRFRPLSPREIRQGEE----IAWYADGETI--LRNEDNPSIAYAYDRVFGP 117
SK N+ V R RP++ +E +G E + + AD ++I L ++ P +++ D+VF P
Sbjct: 1 GSKGNIRVIARVRPVT-KEDGEGPEATNAVTFDADDDSIIHLLHKGKP-VSFELDKVFSP 58
Query: 118 TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH------------------ 159
+ + V+ Q +V+ +DG N IFAYG T +GKT+TM
Sbjct: 59 QASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFS 117
Query: 160 -----TPNREFLLRVSYLEIYNEVVNDLLNPAGQN---LRIREDSQG-TFVEGVKEEVVL 210
+ E+ + VS EIYNEV+ DLL Q +R+ D G +V G+ E V
Sbjct: 118 EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQ 177
Query: 211 SPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPC--GENSAGEAVNLSQLH 268
S + G +R TN N SSRSH + +T+ C G + G +L+
Sbjct: 178 SVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTG------KLN 231
Query: 269 LIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQ 327
L+DLAGSE K+ G R +E +INKSL LG VI+ L R H+P+R+SKLT LLQ
Sbjct: 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS-RQGHVPFRNSKLTYLLQ 290
Query: 328 SSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIEI 367
SLSG + ++ V+P T +LKFA R + +E+
Sbjct: 291 DSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 169/351 (48%), Gaps = 56/351 (15%)
Query: 69 VTVTVRFRPLSPREI-RQGEEIAWYADGETILRNEDNP-------SIAYAYDRVFGP--- 117
V V VR RP + RE+ R + I + T + N P S Y+Y P
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 118 -TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------- 159
+ + VY + ++ A +G N IFAYG T +GK++TM
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 160 ---------TPNREFLLRVSYLEIYNEVVNDLLNPAGQ-NLRIREDSQ-GTFVEGVKEEV 208
N + + VSY+EIY E V DLLNP + NLR+RE G +VE + +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 209 VLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268
V S L+ +G + R V +TN N SSRSH +F + + +S++
Sbjct: 186 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKIS 245
Query: 269 LIDLAGSESSKAETTG---VRRKEGSYINKSLLTLGTVISKLTD-----------GRATH 314
L+DLAGSE +A++TG R KEG+ INKSL TLG VIS L + +
Sbjct: 246 LVDLAGSE--RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDF 303
Query: 315 IPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
IPYRDS LT LL+ +L G+ R +++ ++P T +TL++A RAK I
Sbjct: 304 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 166/330 (50%), Gaps = 36/330 (10%)
Query: 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETILRN--EDNPSIAYAYDRVFGPTTTTRH 123
K + V R RPL +EI E A + E + + +D+ + + YDRVF T
Sbjct: 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDD 63
Query: 124 VYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH--------TP-------------- 161
V++ +++V A+DG N IFAYG T SGKT T++ TP
Sbjct: 64 VFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDS 122
Query: 162 NR-EFLLRVSYLEIYNEVVNDLLNPAGQN---LRIREDSQGTF-VEGVKEEVVLSPAHAL 216
N+ F L+ +E+Y + + DLL P L I++DS+G VE V + +
Sbjct: 123 NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELK 182
Query: 217 SLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSE 276
++I G E RH T N SSRSH I ++ IES+ N +A+ +L +DLAGSE
Sbjct: 183 TIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST----NLQTQAIARGKLSFVDLAGSE 238
Query: 277 S-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGR 335
K+ + G + KE INKSL LG VIS L+ G HIPYR+ KLT L+ SL G+ +
Sbjct: 239 RVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAK 297
Query: 336 VSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
+ ++P THN+L +A R + I
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASRVRSI 327
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 169/351 (48%), Gaps = 56/351 (15%)
Query: 69 VTVTVRFRPLSPREI-RQGEEIAWYADGETILRNEDNP-------SIAYAYDRVFGP--- 117
V V VR RP + RE+ R + I + T + N P S Y+Y P
Sbjct: 22 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 81
Query: 118 -TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------- 159
+ + VY + ++ A +G N IFAYG T +GK++TM
Sbjct: 82 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 141
Query: 160 ---------TPNREFLLRVSYLEIYNEVVNDLLNPAGQ-NLRIREDSQ-GTFVEGVKEEV 208
N + + VSY+EIY E V DLLNP + NLR+RE G +VE + +
Sbjct: 142 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 201
Query: 209 VLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268
V S L+ +G + R V +TN N SSRSH +F + + +S++
Sbjct: 202 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKIS 261
Query: 269 LIDLAGSESSKAETTG---VRRKEGSYINKSLLTLGTVISKLTD-----------GRATH 314
L+DLAGSE +A++TG R KEG+ INKSL TLG VIS L + +
Sbjct: 262 LVDLAGSE--RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDF 319
Query: 315 IPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
IPYRDS LT LL+ +L G+ R +++ ++P T +TL++A RAK I
Sbjct: 320 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 169/351 (48%), Gaps = 56/351 (15%)
Query: 69 VTVTVRFRPLSPREI-RQGEEIAWYADGETILRNEDNP-------SIAYAYDRVFGP--- 117
V V VR RP + RE+ R + I + T + N P S Y+Y P
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 118 -TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------- 159
+ + VY + ++ A +G N IFAYG T +GK++TM
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 160 ---------TPNREFLLRVSYLEIYNEVVNDLLNPAGQ-NLRIREDSQ-GTFVEGVKEEV 208
N + + VSY+EIY E V DLLNP + NLR+RE G +VE + +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 209 VLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268
V S L+ +G + R V +TN N SSRSH +F + + +S++
Sbjct: 186 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKIS 245
Query: 269 LIDLAGSESSKAETTG---VRRKEGSYINKSLLTLGTVISKLTD-----------GRATH 314
L+DLAGSE +A++TG R KEG+ INKSL TLG VIS L + +
Sbjct: 246 LVDLAGSE--RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDF 303
Query: 315 IPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
IPYRDS LT LL+ +L G+ R +++ ++P T +TL++A RAK I
Sbjct: 304 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 169/351 (48%), Gaps = 56/351 (15%)
Query: 69 VTVTVRFRPLSPREI-RQGEEIAWYADGETILRNEDNP-------SIAYAYDRVFGP--- 117
V V VR RP + RE+ R + I + T + N P S Y+Y P
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 118 -TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------- 159
+ + VY + ++ A +G N IFAYG T +GK++TM
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 160 ---------TPNREFLLRVSYLEIYNEVVNDLLNPAGQ-NLRIREDSQ-GTFVEGVKEEV 208
N + + VSY+EIY E V DLLNP + NLR+RE G +VE + +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 209 VLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268
V S L+ +G + R V +TN N SSRSH +F + + +S++
Sbjct: 186 VTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKIS 245
Query: 269 LIDLAGSESSKAETTG---VRRKEGSYINKSLLTLGTVISKLTD-----------GRATH 314
L+DLAGSE +A++TG R KEG+ INKSL TLG VIS L + +
Sbjct: 246 LVDLAGSE--RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDF 303
Query: 315 IPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
IPYRDS LT LL+ +L G+ R +++ ++P T +TL++A RAK I
Sbjct: 304 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 165/339 (48%), Gaps = 38/339 (11%)
Query: 58 YYTENPSSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRN--EDNPSIAYAYDRVF 115
YY K + V R RPL+ +E + E+ E + + +D+ + YDRVF
Sbjct: 4 YYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVF 63
Query: 116 GPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH--------TPNR---- 163
+ +++ +++V A+DG N IFAYG T SGKT T++ TP
Sbjct: 64 DMRASQDDIFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKEL 122
Query: 164 -----------EFLLRVSYLEIYNEVVNDLLNPAGQ---NLRIREDSQG-TFVEGVKEEV 208
F L+ +E+Y + + DLL P L I++DS+G FVE V +
Sbjct: 123 FNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTT-I 181
Query: 209 VLSPAHALSLIAA-GEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQL 267
+S L +I G E RHV TN N SSRSH I ++ IES SA +L
Sbjct: 182 PISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARG----KL 237
Query: 268 HLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLL 326
+DLAGSE K+ + G + KE INKSL LG VI L+ G HIPYR+ KLT L+
Sbjct: 238 SFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ-HIPYRNHKLTMLM 296
Query: 327 QSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
SL G+ + + V+P T+N+L +A R + I
Sbjct: 297 SDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 164/348 (47%), Gaps = 56/348 (16%)
Query: 59 YTENPSSKENVTVTVRFRPL--------SPREIRQGE----EIA-WYADGETILRNEDNP 105
Y + P ++ V V VR RP P +R + EIA W ET+
Sbjct: 15 YFQGPPAR--VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETL------- 65
Query: 106 SIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM-HTP--- 161
Y +D +G +T + +Y + Q ++ ++G N ++ AYG T +GKTHTM +P
Sbjct: 66 --KYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP 123
Query: 162 --------------------NREFLLRV--SYLEIYNEVVNDLLNPAGQNLRIREDSQGT 199
R + L V SYLEIY E V DLL+PA +L IRED +G
Sbjct: 124 GVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGN 183
Query: 200 -FVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSA 258
+ G+ ++ + S A +R VG+T N SSRSH + + ++ E A
Sbjct: 184 ILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR---ERLA 240
Query: 259 GEAVNLSQLHLIDLAGSESSK-AETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPY 317
+L+LIDLAGSE ++ G+R KE IN SL LG V+ L G +PY
Sbjct: 241 PFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG-LPRVPY 299
Query: 318 RDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
RDSKLTRLLQ SL G LI + P T + L FA R+K +
Sbjct: 300 RDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 154/310 (49%), Gaps = 56/310 (18%)
Query: 120 TTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM--------------------- 158
T HVYD + + +G + IFAYG T SGK++TM
Sbjct: 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRI 175
Query: 159 -----HTPNREFLLRVSYLEIYNEVVNDLLNPAGQN-----LRIRED-SQGTFVEGVKEE 207
TPN + ++VSY E+YNE V DLL P N L++RE ++G +V+ + E
Sbjct: 176 ASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEV 235
Query: 208 VVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQL 267
V + + G+ R V ST N SSRSH +FT+ ++ + S++
Sbjct: 236 PVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRI 295
Query: 268 HLIDLAGSESSKA-ETTGVRRKEGSYINKSLLTLGTVISKLTDGRATH------------ 314
L+DLAGSE +K+ E TG R +EGS INKSL TLG VI+ L D +++
Sbjct: 296 RLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRG 355
Query: 315 ---------IPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
+PYRDS LT LL+ SL G+ + ++I ++P T +TL++A +AK I
Sbjct: 356 RTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP--TDYDETLSTLRYADQAKRI 413
Query: 366 EILAAQNKLE 375
A N+++
Sbjct: 414 RTRAVVNQVD 423
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 139/272 (51%), Gaps = 34/272 (12%)
Query: 124 VYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT----------------------- 160
VY+ A+ VVS A+DG NGTI YG T +GKT+TM
Sbjct: 88 VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIE 147
Query: 161 --PNREFLLRVSYLEIYNEVVNDLLN------PAGQNLRIREDSQGTFVEGVKEEVVLSP 212
P +RVSYLEIYNE + DLL+ P+ + I E+ QG F++G+ +
Sbjct: 148 ERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQE 207
Query: 213 AHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDL 272
A SL+ GE +R + S N SSRSH IFT+ +E+ + E S+++L+DL
Sbjct: 208 EDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHS--RTLSEEKYITSKINLVDL 265
Query: 273 AGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLS 331
AGSE K+ + G KE +YINKSL L I L D + HIP+R KLT L+ SL
Sbjct: 266 AGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLG 325
Query: 332 GHGRVSLICTVTPXXXXXXXTHNTLKFAHRAK 363
G+ + L+ + T ++L+FA R K
Sbjct: 326 GNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 144 bits (364), Expect = 2e-34, Method: Composition-based stats.
Identities = 93/237 (39%), Positives = 128/237 (54%), Gaps = 35/237 (14%)
Query: 68 NVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYD 126
++ V RFRPL+ EI +G++ I + ET++ + P Y +DRV P TT VY+
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKP---YVFDRVLPPNTTQEQVYN 63
Query: 127 IAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM----HTP--------------------- 161
A+ +V ++G NGTIFAYG TSSGKTHTM H P
Sbjct: 64 ACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMD 123
Query: 162 -NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQGT-FVEGVKEEVVLSPAHALSLI 219
N EF ++VSY EIY + + DLL+ + NL + ED +V+G E V SP + +I
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVI 183
Query: 220 AAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSE 276
G+ +RHV TN N SSRSH+IF + I+ EN E +L+L+DLAGSE
Sbjct: 184 DEGKANRHVAVTNMNEHSSRSHSIFLINIKQ----ENVETEKKLSGKLYLVDLAGSE 236
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 166/330 (50%), Gaps = 47/330 (14%)
Query: 66 KENVTVTVRFRPLSPREIRQGEEIA-W-YADGETI-LRNEDNPSIA------YAYDRVFG 116
++N+ V R RP P E + W Y D T+ L++ D + + +++D+VF
Sbjct: 58 RDNIRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFH 115
Query: 117 PTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-TP-------------- 161
P ++ ++++ + ++ A+DG N IFAYG T SGKT+TM P
Sbjct: 116 PLSSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF 174
Query: 162 ---------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIR---EDSQGTFVEGVKEEVV 209
E+ ++ ++LEIYNEV+ DLL+ +++ IR + +V + EE V
Sbjct: 175 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETV 234
Query: 210 LSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269
L P H L+ + +R ST N SSRSH + L + G ++ + +++ ++L
Sbjct: 235 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINL 290
Query: 270 IDLAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSS 329
+DLAGSES K T R E IN+SL L VI L + HIPYR+SKLT LL S
Sbjct: 291 VDLAGSESPK---TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 346
Query: 330 LSGHGRVSLICTVTPXXXXXXXTHNTLKFA 359
L G+ + + V+P + +L+FA
Sbjct: 347 LGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 164/328 (50%), Gaps = 47/328 (14%)
Query: 68 NVTVTVRFRP-LSPREIRQGEEIAW-YADGETI-LRNEDNPSIA------YAYDRVFGPT 118
N+ V R RP L E R W Y D T+ L++ D + + +++D+VF P
Sbjct: 68 NIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 125
Query: 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-TP---------------- 161
++ ++++ + ++ A+DG N IFAYG T SGKT+TM P
Sbjct: 126 SSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 184
Query: 162 -------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIR---EDSQGTFVEGVKEEVVLS 211
E+ ++ ++LEIYNEV+ DLL+ +++ IR + +V + EE VL
Sbjct: 185 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 244
Query: 212 PAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLID 271
P H L+ + +R ST N SSRSH + L + G ++ + +++ ++L+D
Sbjct: 245 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVD 300
Query: 272 LAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLS 331
LAGSES K T R E IN+SL L VI L + HIPYR+SKLT LL SL
Sbjct: 301 LAGSESPK---TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 356
Query: 332 GHGRVSLICTVTPXXXXXXXTHNTLKFA 359
G+ + + V+P + +L+FA
Sbjct: 357 GNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 164/328 (50%), Gaps = 47/328 (14%)
Query: 68 NVTVTVRFRPLSPREIRQGEEIA-W-YADGETI-LRNEDNPSIA------YAYDRVFGPT 118
N+ V R RP P E + W Y D T+ L++ D + + +++D+VF P
Sbjct: 54 NIRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 111
Query: 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-TP---------------- 161
++ ++++ + ++ A+DG N IFAYG T SGKT+TM P
Sbjct: 112 SSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 170
Query: 162 -------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIR---EDSQGTFVEGVKEEVVLS 211
E+ ++ ++LEIYNEV+ DLL+ +++ IR + +V + EE VL
Sbjct: 171 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 230
Query: 212 PAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLID 271
P H L+ + +R ST N SSRSH + L + G ++ + +++ ++L+D
Sbjct: 231 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVD 286
Query: 272 LAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLS 331
LAGSES K T R E IN+SL L VI L + HIPYR+SKLT LL SL
Sbjct: 287 LAGSESPK---TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 342
Query: 332 GHGRVSLICTVTPXXXXXXXTHNTLKFA 359
G+ + + V+P + +L+FA
Sbjct: 343 GNSKTLMFINVSPFQDCFQESVKSLRFA 370
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 164/328 (50%), Gaps = 47/328 (14%)
Query: 68 NVTVTVRFRPLSPREIRQGEEIA-W-YADGETI-LRNEDNPSIA------YAYDRVFGPT 118
N+ V R RP P E + W Y D T+ L++ D + + +++D+VF P
Sbjct: 57 NIRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 114
Query: 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-TP---------------- 161
++ ++++ + ++ A+DG N IFAYG + SGKT+TM P
Sbjct: 115 SSQSDIFEMVSP-LIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDS 173
Query: 162 -------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIR---EDSQGTFVEGVKEEVVLS 211
E+ ++ ++LEIYNEV+ DLL+ +++ IR + +V + EE VL
Sbjct: 174 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 233
Query: 212 PAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLID 271
P H L+ + +R ST N SSRSH + L + G ++ + +++ ++L+D
Sbjct: 234 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVD 289
Query: 272 LAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLS 331
LAGSES K T R E IN+SL L VI L + HIPYR+SKLT LL SL
Sbjct: 290 LAGSESPK---TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 345
Query: 332 GHGRVSLICTVTPXXXXXXXTHNTLKFA 359
G+ + + V+P + +L+FA
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 153/303 (50%), Gaps = 39/303 (12%)
Query: 97 TILRNEDN--PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGK 154
I RN +N ++ + +D++F + V++ +Q ++ ++DG N +FAYG T SGK
Sbjct: 418 VITRNINNNFSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGK 476
Query: 155 THTMHTPNR----------------------EFLLRVSYLEIYNEVVNDLLNP---AGQN 189
T TM P + +R ++EIYNE + DLLNP
Sbjct: 477 TFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTK 536
Query: 190 LRIRED--SQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLT 247
I+ D + T V V + SP A++++ + R +T N SSRSH+IF +
Sbjct: 537 YEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIID 596
Query: 248 IESSPCGENSAGEAVNLSQLHLIDLAGSE---SSKAETTGVRRKEGSYINKSLLTLGTVI 304
++ G NS + + L+LIDLAGSE +S+AE G R KE INKSL LG VI
Sbjct: 597 LQ----GYNSLTKESSYGTLNLIDLAGSERLNNSRAE--GDRLKETQAINKSLSCLGDVI 650
Query: 305 SKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKH 364
L +H+PYR+SKLT LL+ SL G+ + + ++P T N+L+FA + +
Sbjct: 651 HSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNN 710
Query: 365 IEI 367
I
Sbjct: 711 TRI 713
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 163/328 (49%), Gaps = 47/328 (14%)
Query: 68 NVTVTVRFRPLSPREIRQGEEIA-W-YADGETI-LRNEDNPSIA------YAYDRVFGPT 118
N+ V R RP P E + W Y D T+ L++ D + + +++D+VF P
Sbjct: 57 NIRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 114
Query: 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-TP---------------- 161
++ ++++ + ++ A+DG N IFAYG T SGKT+TM P
Sbjct: 115 SSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 173
Query: 162 -------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIR---EDSQGTFVEGVKEEVVLS 211
E+ ++ ++LEIYNEV+ DLL+ +++ IR + +V + EE VL
Sbjct: 174 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 233
Query: 212 PAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLID 271
P H L+ + +R ST N SSRSH + L + G ++ + +++ ++L+D
Sbjct: 234 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVD 289
Query: 272 LAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLS 331
LAGSES K T R E I +SL L VI L + HIPYR+SKLT LL SL
Sbjct: 290 LAGSESPK---TSTRMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 345
Query: 332 GHGRVSLICTVTPXXXXXXXTHNTLKFA 359
G+ + + V+P + +L+FA
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 163/352 (46%), Gaps = 63/352 (17%)
Query: 62 NPSSKENVTVTVRFRPLSPREIRQGE-EIAWYADGETILRNEDNPSI---------AYAY 111
+P + + V VR RPL+ +E+ + E ++ +L +E + A+ +
Sbjct: 66 DPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCF 125
Query: 112 DRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH------------ 159
D F T + VY A+ +V +G T FAYG T SGKTHTM
Sbjct: 126 DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASK 185
Query: 160 ----TPNRE-FLLR-------------VSYLEIYNEVVNDLLNPAGQNLRIREDS-QGTF 200
+R+ FLL+ V++ EIYN V DLLN + LR+ EDS Q
Sbjct: 186 GIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQ 244
Query: 201 VEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGE 260
V G++E +V + +I G R G T N SSRSH F + + +
Sbjct: 245 VVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--------- 295
Query: 261 AVNLSQLH----LIDLAGSESSKAETTGVR--RKEGSYINKSLLTLGTVISKLTDGRATH 314
+LH L+DLAG+E ++ R R EG+ INKSLL L I L +A H
Sbjct: 296 ----GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-H 350
Query: 315 IPYRDSKLTRLLQSSLSG-HGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
P+R+SKLT++L+ S G + R +I ++P T NTL++A R K +
Sbjct: 351 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 165/346 (47%), Gaps = 51/346 (14%)
Query: 68 NVTVTVRFRPLSPREIRQGEEIAW--YAD-----GETILRNEDNPSIAYAYDRVFGPTTT 120
N+ V R RP P E E I + D G TI R ++ I + +D++F T
Sbjct: 29 NIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRG-NSQVIPFKFDKIFDQQET 87
Query: 121 TRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------------------ 162
++ Q ++ ++DG N IFAYG T SGKT+TM P
Sbjct: 88 NDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPATINHIFSWIDKL 146
Query: 163 --REFLLRVS--YLEIYNEVVNDLLN---PAGQN----------LRIREDSQGTFVEGVK 205
R + +VS ++EIYNE + DLL P+ +N +R ++ + T++ +
Sbjct: 147 AARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNIT 206
Query: 206 EEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLS 265
V+ S ++ + R ST N SSRSH+IF + +E G + +
Sbjct: 207 TCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGI--- 263
Query: 266 QLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLT--DGRATHIPYRDSKL 322
L+L+DLAGSE + + G R +E INKSL LG VI L DG+ HIP+R+SKL
Sbjct: 264 -LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKL 322
Query: 323 TRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIEIL 368
T LLQ SL G + + ++P T N+L+FA + + +++
Sbjct: 323 TYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTKMI 368
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 160/345 (46%), Gaps = 63/345 (18%)
Query: 69 VTVTVRFRPLSPREIRQGE-EIAWYADGETILRNEDNPSI---------AYAYDRVFGPT 118
+ V VR RPL+ +E+ + E ++ +L +E + A+ +D F T
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------TPN 162
+ VY A+ +V +G T FAYG T SGKTHTM +
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 163 RE-FLLR-------------VSYLEIYNEVVNDLLNPAGQNLRIREDS-QGTFVEGVKEE 207
R+ FLL+ V++ EIYN V DLLN + LR+ EDS Q V G++E
Sbjct: 121 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQEY 179
Query: 208 VVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQL 267
+V + +I G R G T N SSRSH F + + + +L
Sbjct: 180 LVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-------------GRL 226
Query: 268 H----LIDLAGSESSKAETTGVR--RKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSK 321
H L+DLAG+E ++ R R EG+ INKSLL L I L +A H P+R+SK
Sbjct: 227 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESK 285
Query: 322 LTRLLQSSLSG-HGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
LT++L+ S G + R +I ++P T NTL++A R K +
Sbjct: 286 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 163/348 (46%), Gaps = 55/348 (15%)
Query: 62 NPSSKENVTVTVRFRPLSPREIRQGE-EIAWYADGETILRNEDNPSI---------AYAY 111
+P + + V VR RPL+ +E+ + E ++ +L +E + A+ +
Sbjct: 46 DPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCF 105
Query: 112 DRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH------------ 159
D F T + VY A+ +V +G T FAYG T SGKTHTM
Sbjct: 106 DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASK 165
Query: 160 ----TPNRE-FLLR-------------VSYLEIYNEVVNDLLNPAGQNLRIREDS-QGTF 200
+R+ FLL+ V++ EIYN + DLLN + LR+ ED Q
Sbjct: 166 GIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK-LRVLEDGKQQVQ 224
Query: 201 VEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGE 260
V G++E +V S + +I G R G T N SSRSH F + + + +
Sbjct: 225 VVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA---------K 275
Query: 261 AVNLSQLHLIDLAGSESSKAETTGVR--RKEGSYINKSLLTLGTVISKLTDGRATHIPYR 318
+ L+DLAG+E ++ R R EG+ INKSLL L I L +A H P+R
Sbjct: 276 GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFR 334
Query: 319 DSKLTRLLQSSLSG-HGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
+SKLT++L+ S G + R +I T++P T NTL++A R K +
Sbjct: 335 ESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 160/348 (45%), Gaps = 55/348 (15%)
Query: 68 NVTVTVRFRPLSPREIRQGEEI-------AWYADGETILRNEDNP-SIAYAYDRVFGPTT 119
N+ V R RP E + I A A TI RNE S + +D +F P+
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSH 65
Query: 120 TTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM-----------------HTPN 162
T + +++ Q +V ++DG N IFAYG T SGKT+TM T N
Sbjct: 66 TNKEIFEEIRQ-LVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTAN 124
Query: 163 -----REFLLRVSYLEIYNEVVNDLL-------------NPAGQNLRIREDSQGTFVEGV 204
+ + Y+EIYNE + DLL + ++R + QGT++ V
Sbjct: 125 LKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNV 184
Query: 205 KEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSP--CGENSAGEAV 262
+ S + +++ + R +T N SSRSH++F + I GE S G
Sbjct: 185 TRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQG--- 241
Query: 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLT--DGRATHIPYRD 319
+L+L+DLAGSE + + TG R +E INKSL LG VI L D +IP+R+
Sbjct: 242 ---KLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRN 298
Query: 320 SKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHIEI 367
SKLT LLQ SL G + + + P T N+L+FA + +I
Sbjct: 299 SKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKI 346
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 157/355 (44%), Gaps = 65/355 (18%)
Query: 60 TENPSSKENVTVTVRFRPLSPREIRQGE-EIAWYADGETILRNEDNPSI---------AY 109
T +P + + V VR RPL+ +E + + ++ + ++ +E + +
Sbjct: 82 TADPIDEHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTF 141
Query: 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM----------- 158
+D F + VY A+ +V + T FAYG T SGKTHTM
Sbjct: 142 RFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDC 201
Query: 159 ----------------HTPNR---EFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS-QG 198
PN E + ++ EIY+ V DLLN + LR+ ED Q
Sbjct: 202 SKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQQ 260
Query: 199 TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSA 258
V G++E V L LI G R G T+ N SSRSH +F + +
Sbjct: 261 VQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK------- 313
Query: 259 GEAVNLSQLH----LIDLAGSESSKAETTGVR--RKEGSYINKSLLTLGTVISKLTDGR- 311
+LH LIDLAG+E ++ R R EG+ INKSLL L I L GR
Sbjct: 314 ------GKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL--GRN 365
Query: 312 ATHIPYRDSKLTRLLQSSLSG-HGRVSLICTVTPXXXXXXXTHNTLKFAHRAKHI 365
H P+R SKLT++L+ S G + R +I T++P T NTL++A+R K +
Sbjct: 366 KPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 164/370 (44%), Gaps = 80/370 (21%)
Query: 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADGE----------TILRNEDN--------- 104
S K N+ V R RP+ P E + + G ++ R+++
Sbjct: 19 SLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPA 78
Query: 105 --PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT-- 160
P +++DRVF P + V++ A V S A+DG IFAYG T SGKT TM
Sbjct: 79 PPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQS-ALDGYPVCIFAYGQTGSGKTFTMEGGP 137
Query: 161 ---PNREFLLR-----------------------VSYLEIYNEVVNDLLNPA-----GQN 189
P E L+ SY+EIYNE V DLL G
Sbjct: 138 GGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGE 197
Query: 190 LRIREDSQGTFVEGVKEEVVLSPAHAL---------SLIAAGEEHRHVGSTNFNLLSSRS 240
IR G+ EE+ ++ A + +L+ ++R V T N SSRS
Sbjct: 198 CEIRRAGPGS------EELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRS 251
Query: 241 HTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSE---SSKAETTGVRRK--EGSYINK 295
H++F L I GE+S+ + L L+DLAGSE A G R + E IN
Sbjct: 252 HSVFQLQIS----GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINS 307
Query: 296 SLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNT 355
SL TLG VI L++ + +H+PYR+SKLT LLQ+SL G ++ + ++P + N+
Sbjct: 308 SLSTLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNS 366
Query: 356 LKFAHRAKHI 365
L+FA +
Sbjct: 367 LRFASKVNQC 376
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 133/299 (44%), Gaps = 59/299 (19%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------ 162
+ +D++F T V+ Q +V ++DG N IFAYG T SGKT TM P
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPS 168
Query: 163 ----------------REFLLRVSYLEIYNEVVNDLLNPAGQNLR---------IREDSQ 197
++ + ++EIYNE + DLL N IR D +
Sbjct: 169 TISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 228
Query: 198 GTFVEGVKE-----------EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTL 246
E++L A+ L R ST N SSRSH+IF +
Sbjct: 229 TKTTTITNVTSVKLESEEMVEIILKKANKL---------RSTASTASNEHSSRSHSIFII 279
Query: 247 TIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVIS 305
+ G N+ A + L+L+DLAGSE + ++ G R +E INKSL LG VI
Sbjct: 280 HL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIH 335
Query: 306 KL--TDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRA 362
L D HIP+R+SKLT LLQ SL+G + + ++P T N+L+FA +
Sbjct: 336 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 133/299 (44%), Gaps = 59/299 (19%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------ 162
+ +D++F T V+ Q +V ++DG N IFAYG T SGKT TM P
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 123
Query: 163 ----------------REFLLRVSYLEIYNEVVNDLLNPAGQN---------LRIREDSQ 197
++ + ++EIYNE + DLL N IR D +
Sbjct: 124 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 183
Query: 198 GTFVEGVKE-----------EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTL 246
E++L A+ L R ST N SSRSH+IF +
Sbjct: 184 TKTTTITNVTSCKLESEEMVEIILKKANKL---------RSTASTASNEHSSRSHSIFII 234
Query: 247 TIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVIS 305
+ G N+ A + L+L+DLAGSE + ++ G R +E INKSL LG VI
Sbjct: 235 HLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 290
Query: 306 KL--TDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRA 362
L D HIP+R+SKLT LLQ SL+G + + ++P T N+L+FA +
Sbjct: 291 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 133/299 (44%), Gaps = 59/299 (19%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------ 162
+ +D++F T V+ Q +V ++DG N IFAYG T SGKT TM P
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 111
Query: 163 ----------------REFLLRVSYLEIYNEVVNDLLNPAGQN---------LRIREDSQ 197
++ + ++EIYNE + DLL N IR D +
Sbjct: 112 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 171
Query: 198 GTFVEGVKE-----------EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTL 246
E++L A+ L R ST N SSRSH+IF +
Sbjct: 172 TKTTTITNVTSCKLESEEMVEIILKKANKL---------RSTASTASNEHSSRSHSIFII 222
Query: 247 TIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVIS 305
+ G N+ A + L+L+DLAGSE + ++ G R +E INKSL LG VI
Sbjct: 223 HLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 278
Query: 306 KL--TDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRA 362
L D HIP+R+SKLT LLQ SL+G + + ++P T N+L+FA +
Sbjct: 279 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 132/299 (44%), Gaps = 59/299 (19%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------ 162
+ +D++F T V+ Q +V ++DG N IFAYG T SGKT TM P
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 163 ----------------REFLLRVSYLEIYNEVVNDLLNPAGQN---------LRIREDSQ 197
++ + ++EIYNE + DLL N IR D +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 198 GTFVEGVKE-----------EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTL 246
E++L A+ L R ST N SSRSH+IF +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKL---------RSTASTASNEHSSRSHSIFII 223
Query: 247 TIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVIS 305
+ G N+ A + L+L+DLAGS + ++ G R +E INKSL LG VI
Sbjct: 224 HLS----GSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIH 279
Query: 306 KL--TDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRA 362
L D HIP+R+SKLT LLQ SL+G + + ++P T N+L+FA +
Sbjct: 280 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 132/299 (44%), Gaps = 59/299 (19%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------ 162
+ +D++F T V+ Q +V ++DG N IFAYG T SGKT TM P
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 163 ----------------REFLLRVSYLEIYNEVVNDLLNPAGQN---------LRIREDSQ 197
++ + ++EIYNE + DLL N IR D +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 198 GTFVEGVKE-----------EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTL 246
E++L A+ L R ST N SSRSH+IF +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKL---------RSTASTASNEHSSRSHSIFII 223
Query: 247 TIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVIS 305
+ G N+ A + L+L+DLAGSE + ++ G R +E I KSL LG VI
Sbjct: 224 HLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIH 279
Query: 306 KL--TDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRA 362
L D HIP+R+SKLT LLQ SL+G + + ++P T N+L+FA +
Sbjct: 280 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 132/299 (44%), Gaps = 59/299 (19%)
Query: 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------ 162
+ +D++F T V+ Q +V ++DG N IFAYG T SGKT TM P
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 163 ----------------REFLLRVSYLEIYNEVVNDLLNPAGQN---------LRIREDSQ 197
++ + ++EIYNE + DLL N IR D +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 198 GTFVEGVKE-----------EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTL 246
E++L A+ L R ST N SS SH+IF +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKL---------RSTASTASNEHSSASHSIFII 223
Query: 247 TIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVIS 305
+ G N+ A + L+L+DLAGSE + ++ G R +E INKSL LG VI
Sbjct: 224 HLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 279
Query: 306 KL--TDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRA 362
L D HIP+R+SKLT LLQ SL+G + + ++P T N+L+FA +
Sbjct: 280 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 140/308 (45%), Gaps = 52/308 (16%)
Query: 92 YADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTS 151
++DG++++ +++ + +D F T + +Y +V ++G T AYG T
Sbjct: 50 WSDGKSLIVDQNE----FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG 105
Query: 152 SGKTHTM-HTPNREFL------------------------------LRVSYLEIYNEVVN 180
+GK+++M TP E L + S++EIYNE
Sbjct: 106 TGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPF 165
Query: 181 DLLNPAGQNLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRS 240
DLL + Q + + L H L L G +R V TN N SSRS
Sbjct: 166 DLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSNSSRS 220
Query: 241 HTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSK-AETTGVRRKEGSYINKSLLT 299
H I T+ ++S + S+++++DLAGSE + GV R+EG IN LL+
Sbjct: 221 HAIVTIHVKSK----------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLS 270
Query: 300 LGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFA 359
+ V+ + G T IPYRDS LT +LQ+SL+ ++ + ++P T +TL+F
Sbjct: 271 INKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFG 329
Query: 360 HRAKHIEI 367
AK + +
Sbjct: 330 TSAKKLRL 337
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 138/304 (45%), Gaps = 52/304 (17%)
Query: 92 YADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTS 151
++DG++++ +++ + +D F T + +Y +V ++G T AYG T
Sbjct: 50 WSDGKSLIVDQNE----FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG 105
Query: 152 SGKTHTM-HTPNREFL------------------------------LRVSYLEIYNEVVN 180
+GK+++M TP E L + S++EIYNE
Sbjct: 106 TGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPF 165
Query: 181 DLLNPAGQNLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRS 240
DLL + Q + + L H L L G +R V TN N SSRS
Sbjct: 166 DLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSNSSRS 220
Query: 241 HTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSK-AETTGVRRKEGSYINKSLLT 299
H I T+ ++S + S+++++DLAGSE + GV R+EG IN LL+
Sbjct: 221 HAIVTIHVKSK----------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLS 270
Query: 300 LGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFA 359
+ V+ + G T IPYRDS LT +LQ+SL+ ++ + ++P T +TL+F
Sbjct: 271 INKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFG 329
Query: 360 HRAK 363
AK
Sbjct: 330 TSAK 333
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 151/338 (44%), Gaps = 51/338 (15%)
Query: 69 VTVTVRFRPLSPREIRQGE-EIAWYADGETILRNEDNPSI---------AYAYDRVFGPT 118
+ V VR RPLS E ++ + +I + T+ +E + + D+VF T
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 119 TTTRHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTM---------HTPN------ 162
VY+ + ++ +G + FAYG T SGKT+TM TP
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 163 ---REFL----------LRVSYLEIYNEVVNDLLNPAGQNLRIREDSQGTFVEGVKEEVV 209
FL + +S+ EIY + DLL + + V+ +K V
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRV 181
Query: 210 LSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269
L+ + + G R +G + N SSRSH I L I+ +N++ L ++
Sbjct: 182 LTKEELILKMIDGVLLRKIGVNSQNDESSRSHAI--LNIDLKDINKNTS-----LGKIAF 234
Query: 270 IDLAGSESSKAETTGVRRK---EGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLL 326
IDLAGSE A+T ++ +G+ IN+SLL L I + D HIP+RDS+LT++L
Sbjct: 235 IDLAGSERG-ADTVSQNKQTQTDGANINRSLLALKECIRAM-DSDKNHIPFRDSELTKVL 292
Query: 327 QSSLSGHGRVSLICTVTPXXXXXXXTHNTLKFAHRAKH 364
+ G + +I ++P T NTL+++ R K+
Sbjct: 293 RDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%)
Query: 293 INKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXT 352
INKSL LG VIS L +G TH+PYRDSK+TR+LQ SL G+ R +++ +P T
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 353 HNTLKFAHRAKHIE 366
+TL F RAK I+
Sbjct: 64 KSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%)
Query: 294 NKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPXXXXXXXTH 353
NKSL LG VIS L +G TH+PYRDSK+TR+LQ SL G+ R +++ +P T
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 354 NTLKFAHRAKHIE 366
+TL F RAK I+
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus.
pdb|4DQ1|B Chain B, Thymidylate Synthase From Staphylococcus Aureus
Length = 321
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 717 EAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPT 776
+ KEQ++ Q++ E+ ++AK V K + V K NH ++L + K +P
Sbjct: 123 QYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDKDGNHFDQLKTVIEQIKHNPD 182
Query: 777 QRR 779
RR
Sbjct: 183 SRR 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,989,649
Number of Sequences: 62578
Number of extensions: 797033
Number of successful extensions: 2356
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1993
Number of HSP's gapped (non-prelim): 169
length of query: 878
length of database: 14,973,337
effective HSP length: 107
effective length of query: 771
effective length of database: 8,277,491
effective search space: 6381945561
effective search space used: 6381945561
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)