Query 002808
Match_columns 878
No_of_seqs 418 out of 1993
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 11:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0240 Kinesin (SMY1 subfamil 100.0 1.7E-93 3.8E-98 797.5 31.2 472 65-623 5-514 (607)
2 KOG0243 Kinesin-like protein [ 100.0 1.1E-82 2.4E-87 752.7 40.8 331 64-407 46-421 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 1.8E-83 4E-88 746.2 21.9 328 66-395 3-376 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 8.4E-83 1.8E-87 727.8 25.1 328 66-406 4-365 (574)
5 KOG0242 Kinesin-like protein [ 100.0 2.9E-81 6.3E-86 737.3 25.2 589 66-741 5-657 (675)
6 PLN03188 kinesin-12 family pro 100.0 3.9E-79 8.4E-84 728.2 38.4 309 62-376 93-445 (1320)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.4E-75 3.1E-80 644.9 31.5 296 67-365 1-337 (337)
8 cd01370 KISc_KIP3_like Kinesin 100.0 6.9E-75 1.5E-79 639.7 32.4 297 68-365 1-338 (338)
9 KOG0241 Kinesin-like protein [ 100.0 1.4E-74 3E-79 660.0 25.1 321 66-388 3-372 (1714)
10 cd01368 KISc_KIF23_like Kinesi 100.0 2.5E-73 5.5E-78 629.0 31.5 297 67-363 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.4E-73 1.2E-77 628.5 32.3 306 67-372 1-356 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.9E-71 6.3E-76 613.5 32.0 305 67-373 2-351 (352)
13 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.7E-71 1E-75 605.5 31.0 295 67-365 2-325 (325)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 8.7E-71 1.9E-75 605.8 32.2 298 67-365 1-333 (333)
15 cd01367 KISc_KIF2_like Kinesin 100.0 6E-71 1.3E-75 604.7 29.5 288 67-363 1-322 (322)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 3.1E-70 6.7E-75 598.4 32.4 297 68-365 1-321 (321)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 6.7E-70 1.5E-74 599.8 31.4 296 68-366 2-341 (341)
18 cd01376 KISc_KID_like Kinesin 100.0 7.6E-70 1.6E-74 595.2 31.5 289 68-363 1-319 (319)
19 cd01375 KISc_KIF9_like Kinesin 100.0 4.3E-69 9.3E-74 592.8 31.5 290 68-363 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 5.2E-68 1.1E-72 582.2 32.3 296 66-367 1-328 (329)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 1.4E-67 3E-72 619.7 21.3 306 61-372 308-647 (670)
22 smart00129 KISc Kinesin motor, 100.0 7.2E-66 1.6E-70 566.0 32.4 303 68-372 1-335 (335)
23 KOG0246 Kinesin-like protein [ 100.0 1.3E-66 2.8E-71 579.8 25.7 294 64-366 205-542 (676)
24 cd00106 KISc Kinesin motor dom 100.0 5.5E-65 1.2E-69 556.8 32.5 294 68-363 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 3.9E-66 8.4E-71 567.4 18.6 292 74-365 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 4.2E-63 9.2E-68 564.7 32.4 305 64-372 28-443 (809)
27 KOG0244 Kinesin-like protein [ 100.0 1.8E-60 3.8E-65 556.9 29.1 292 75-373 1-325 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.9E-57 6.2E-62 528.5 25.9 299 65-373 20-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.2E-46 2.6E-51 382.6 14.7 178 124-344 8-186 (186)
30 PF07888 CALCOCO1: Calcium bin 98.0 0.0071 1.5E-07 71.3 29.6 278 517-855 163-463 (546)
31 COG5059 KIP1 Kinesin-like prot 97.6 8.1E-07 1.8E-11 105.6 -9.4 231 64-308 302-566 (568)
32 TIGR02169 SMC_prok_A chromosom 97.6 0.054 1.2E-06 69.3 32.2 15 145-159 27-41 (1164)
33 TIGR02169 SMC_prok_A chromosom 97.5 0.13 2.8E-06 65.8 34.2 56 805-860 447-502 (1164)
34 TIGR02168 SMC_prok_B chromosom 97.5 0.071 1.5E-06 68.0 31.1 16 143-158 25-40 (1179)
35 TIGR02168 SMC_prok_B chromosom 97.4 0.13 2.9E-06 65.6 32.0 23 747-769 868-890 (1179)
36 PRK11637 AmiB activator; Provi 97.4 0.021 4.6E-07 66.1 22.1 86 557-655 45-130 (428)
37 PRK04863 mukB cell division pr 97.2 0.2 4.4E-06 66.2 31.0 305 519-865 301-620 (1486)
38 PRK02224 chromosome segregatio 97.2 0.44 9.5E-06 59.9 32.9 87 557-653 204-290 (880)
39 COG1196 Smc Chromosome segrega 97.0 0.39 8.4E-06 62.6 30.3 130 519-654 180-314 (1163)
40 PRK03918 chromosome segregatio 96.9 0.76 1.7E-05 57.7 31.2 124 518-651 158-282 (880)
41 TIGR00606 rad50 rad50. This fa 96.9 0.83 1.8E-05 60.3 32.5 79 564-653 797-875 (1311)
42 KOG0963 Transcription factor/C 96.8 0.33 7.1E-06 58.0 24.5 130 517-655 120-269 (629)
43 COG1196 Smc Chromosome segrega 96.8 0.92 2E-05 59.2 30.9 49 802-850 859-907 (1163)
44 PRK02224 chromosome segregatio 96.4 2 4.3E-05 54.2 29.9 15 144-158 26-40 (880)
45 KOG0161 Myosin class II heavy 96.4 1.1 2.5E-05 60.2 28.0 147 702-860 1216-1362(1930)
46 PF15070 GOLGA2L5: Putative go 96.4 1.1 2.4E-05 54.6 25.8 102 742-854 283-387 (617)
47 PRK11637 AmiB activator; Provi 96.3 0.5 1.1E-05 54.8 22.3 68 515-582 44-119 (428)
48 PHA02562 46 endonuclease subun 96.3 0.9 1.9E-05 54.1 24.5 69 517-587 180-248 (562)
49 PF12128 DUF3584: Protein of u 96.2 3.2 6.9E-05 54.5 31.0 71 702-772 606-676 (1201)
50 PF04849 HAP1_N: HAP1 N-termin 96.1 0.32 7E-06 54.1 17.8 127 698-839 169-295 (306)
51 PRK03918 chromosome segregatio 96.0 6.6 0.00014 49.5 33.9 31 517-547 206-236 (880)
52 PF09726 Macoilin: Transmembra 96.0 0.18 3.9E-06 62.0 17.3 132 516-650 416-581 (697)
53 KOG0946 ER-Golgi vesicle-tethe 96.0 2.4 5.3E-05 52.2 25.6 272 517-840 656-952 (970)
54 PF05701 WEMBL: Weak chloropla 95.9 4.9 0.00011 48.2 28.2 41 619-659 114-154 (522)
55 TIGR00606 rad50 rad50. This fa 95.8 5.9 0.00013 52.6 30.6 35 619-653 879-913 (1311)
56 PF04849 HAP1_N: HAP1 N-termin 95.8 0.77 1.7E-05 51.2 19.0 121 517-653 110-245 (306)
57 PF00038 Filament: Intermediat 95.7 4.5 9.7E-05 44.7 27.8 120 516-653 16-135 (312)
58 KOG0933 Structural maintenance 95.6 4.2 9E-05 51.3 25.7 198 550-755 732-937 (1174)
59 PF09726 Macoilin: Transmembra 95.5 1.7 3.6E-05 53.8 22.4 190 556-841 422-629 (697)
60 COG3883 Uncharacterized protei 95.3 2.1 4.5E-05 47.0 20.0 40 700-750 194-233 (265)
61 KOG0971 Microtubule-associated 95.3 5.2 0.00011 49.9 25.0 131 614-767 403-547 (1243)
62 KOG0161 Myosin class II heavy 95.3 17 0.00036 49.8 31.7 29 130-158 156-185 (1930)
63 KOG0980 Actin-binding protein 95.1 13 0.00028 46.7 32.8 49 518-571 329-377 (980)
64 KOG4674 Uncharacterized conser 95.1 2.2 4.8E-05 56.9 22.7 221 551-835 1159-1389(1822)
65 PF10174 Cast: RIM-binding pro 94.8 12 0.00025 47.1 26.9 63 701-766 526-588 (775)
66 TIGR02680 conserved hypothetic 94.7 22 0.00047 47.6 30.6 61 600-660 340-400 (1353)
67 KOG4674 Uncharacterized conser 94.7 20 0.00044 48.5 29.5 47 801-847 1438-1486(1822)
68 KOG0976 Rho/Rac1-interacting s 94.6 17 0.00036 45.2 28.7 43 616-658 171-213 (1265)
69 PHA02562 46 endonuclease subun 94.6 10 0.00022 45.2 25.3 17 142-158 28-44 (562)
70 COG4942 Membrane-bound metallo 94.5 4.6 9.9E-05 47.0 20.9 47 607-653 38-84 (420)
71 PF00038 Filament: Intermediat 94.4 4.5 9.8E-05 44.7 20.3 28 746-773 277-304 (312)
72 PRK04863 mukB cell division pr 94.2 18 0.0004 48.6 28.4 65 802-866 1063-1130(1486)
73 COG4942 Membrane-bound metallo 94.1 9.1 0.0002 44.7 22.4 56 713-772 202-258 (420)
74 PF07888 CALCOCO1: Calcium bin 94.0 19 0.00041 43.5 31.3 36 616-651 201-236 (546)
75 KOG0971 Microtubule-associated 93.9 24 0.00052 44.5 28.3 122 523-653 229-357 (1243)
76 PF14662 CCDC155: Coiled-coil 93.6 4.2 9.1E-05 42.6 16.8 57 702-772 66-122 (193)
77 PRK04778 septation ring format 93.4 3.5 7.6E-05 49.9 18.6 94 554-653 326-429 (569)
78 PRK09039 hypothetical protein; 93.4 1.8 3.9E-05 49.2 15.1 127 517-650 45-173 (343)
79 PF15619 Lebercilin: Ciliary p 93.2 2.1 4.6E-05 45.0 14.2 107 517-653 81-189 (194)
80 KOG0612 Rho-associated, coiled 93.1 30 0.00065 45.0 25.8 76 698-773 576-651 (1317)
81 PRK06893 DNA replication initi 93.0 0.074 1.6E-06 56.4 3.3 47 107-159 11-57 (229)
82 PF00308 Bac_DnaA: Bacterial d 92.9 0.056 1.2E-06 57.1 2.2 49 108-159 4-52 (219)
83 COG0556 UvrB Helicase subunit 92.8 0.16 3.4E-06 59.9 5.6 68 107-179 3-100 (663)
84 PF09730 BicD: Microtubule-ass 92.6 35 0.00076 42.6 25.8 190 517-758 264-460 (717)
85 PRK04778 septation ring format 92.5 31 0.00067 41.9 29.1 101 746-862 311-411 (569)
86 KOG0933 Structural maintenance 92.4 16 0.00035 46.5 21.9 30 557-586 263-292 (1174)
87 KOG0612 Rho-associated, coiled 92.3 24 0.00053 45.8 23.6 23 137-159 84-106 (1317)
88 KOG4673 Transcription factor T 91.9 39 0.00084 41.6 25.4 63 748-840 883-945 (961)
89 PRK06620 hypothetical protein; 91.6 0.084 1.8E-06 55.7 1.6 49 107-159 11-62 (214)
90 PRK09039 hypothetical protein; 91.6 5.8 0.00013 45.1 16.2 40 801-840 139-178 (343)
91 PF05667 DUF812: Protein of un 91.5 19 0.0004 44.1 21.1 121 598-728 424-544 (594)
92 PF04111 APG6: Autophagy prote 91.5 1.2 2.5E-05 50.1 10.4 123 521-656 12-134 (314)
93 PF09789 DUF2353: Uncharacteri 90.9 12 0.00026 42.3 17.3 102 550-658 77-184 (319)
94 PF15035 Rootletin: Ciliary ro 90.7 2.1 4.6E-05 44.6 10.6 95 560-654 17-114 (182)
95 COG2805 PilT Tfp pilus assembl 90.3 0.15 3.3E-06 56.6 2.0 31 129-159 113-143 (353)
96 PRK01156 chromosome segregatio 89.8 69 0.0015 40.8 32.6 17 143-159 25-41 (895)
97 PRK05642 DNA replication initi 89.7 0.23 5E-06 53.0 2.8 46 107-159 14-63 (234)
98 COG2804 PulE Type II secretory 89.6 0.27 6E-06 57.9 3.5 30 130-159 247-276 (500)
99 PRK14086 dnaA chromosomal repl 89.5 0.2 4.3E-06 60.7 2.3 50 107-159 283-332 (617)
100 PF14988 DUF4515: Domain of un 89.4 9.3 0.0002 40.6 14.4 138 516-656 45-198 (206)
101 PF10473 CENP-F_leu_zip: Leuci 89.2 14 0.0003 37.1 14.5 75 556-650 7-81 (140)
102 PF08614 ATG16: Autophagy prot 89.2 2.3 5E-05 44.4 9.6 54 603-656 126-179 (194)
103 PRK12377 putative replication 89.2 0.31 6.8E-06 52.8 3.3 50 108-159 70-119 (248)
104 PRK09087 hypothetical protein; 89.1 0.2 4.3E-06 53.3 1.8 47 107-159 16-62 (226)
105 COG0419 SbcC ATPase involved i 89.0 80 0.0017 40.6 29.7 17 142-158 26-42 (908)
106 COG5185 HEC1 Protein involved 89.0 20 0.00044 42.1 17.5 88 520-611 297-386 (622)
107 PRK14088 dnaA chromosomal repl 88.9 0.26 5.6E-06 57.6 2.6 49 107-159 100-148 (440)
108 PRK06526 transposase; Provisio 88.9 0.23 5.1E-06 53.9 2.1 44 111-159 73-116 (254)
109 COG1579 Zn-ribbon protein, pos 88.8 35 0.00076 37.2 18.3 109 520-653 12-128 (239)
110 PRK08116 hypothetical protein; 88.6 0.29 6.3E-06 53.5 2.6 52 107-160 80-133 (268)
111 PF09730 BicD: Microtubule-ass 88.6 77 0.0017 39.8 29.8 60 701-774 263-322 (717)
112 PRK08084 DNA replication initi 88.6 0.31 6.7E-06 52.0 2.8 47 107-159 17-63 (235)
113 PF06818 Fez1: Fez1; InterPro 88.4 4.9 0.00011 42.6 11.3 90 517-653 9-98 (202)
114 PRK00149 dnaA chromosomal repl 88.0 0.32 7E-06 56.7 2.7 50 107-159 117-166 (450)
115 PF06160 EzrA: Septation ring 87.9 73 0.0016 38.8 26.6 135 704-863 272-408 (560)
116 TIGR00362 DnaA chromosomal rep 87.7 0.34 7.5E-06 55.6 2.6 50 107-159 105-154 (405)
117 KOG0249 LAR-interacting protei 87.6 15 0.00032 45.2 15.8 162 621-862 91-258 (916)
118 KOG4643 Uncharacterized coiled 87.4 1E+02 0.0022 39.8 27.8 49 517-571 176-224 (1195)
119 KOG0250 DNA repair protein RAD 87.2 1.1E+02 0.0023 39.9 23.6 162 557-750 279-448 (1074)
120 PF05622 HOOK: HOOK protein; 87.2 0.18 3.9E-06 62.2 0.0 85 554-655 241-328 (713)
121 KOG0240 Kinesin (SMY1 subfamil 87.2 42 0.00092 40.6 19.0 35 513-547 336-370 (607)
122 KOG0250 DNA repair protein RAD 87.2 1.1E+02 0.0023 39.9 28.7 190 555-773 692-885 (1074)
123 KOG0996 Structural maintenance 86.8 1.2E+02 0.0025 39.9 29.9 136 517-653 777-918 (1293)
124 PF05557 MAD: Mitotic checkpoi 86.8 2.4 5.2E-05 52.6 9.4 23 745-767 606-628 (722)
125 TIGR02928 orc1/cdc6 family rep 86.6 0.62 1.4E-05 52.1 3.8 22 138-159 37-58 (365)
126 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.6 24 0.00051 34.7 14.3 128 560-729 4-131 (132)
127 PRK07952 DNA replication prote 86.4 0.51 1.1E-05 51.1 2.9 50 108-159 68-117 (244)
128 PRK14087 dnaA chromosomal repl 86.4 0.44 9.6E-06 55.9 2.6 49 108-159 111-159 (450)
129 PRK00411 cdc6 cell division co 85.8 0.69 1.5E-05 52.4 3.7 22 138-159 52-73 (394)
130 PRK08181 transposase; Validate 85.6 0.72 1.6E-05 50.6 3.6 45 110-159 79-124 (269)
131 PTZ00112 origin recognition co 85.6 0.87 1.9E-05 57.2 4.6 22 138-159 778-799 (1164)
132 PRK10884 SH3 domain-containing 85.5 6 0.00013 42.0 10.2 33 619-651 137-169 (206)
133 TIGR03420 DnaA_homol_Hda DnaA 85.4 0.76 1.7E-05 47.7 3.5 47 107-159 10-56 (226)
134 PRK08727 hypothetical protein; 85.0 0.55 1.2E-05 50.0 2.3 44 108-159 15-59 (233)
135 PF10498 IFT57: Intra-flagella 84.8 33 0.00072 39.5 16.4 81 557-653 239-319 (359)
136 PRK06835 DNA replication prote 84.7 0.45 9.7E-06 53.7 1.5 35 123-159 167-201 (329)
137 cd00009 AAA The AAA+ (ATPases 84.6 0.74 1.6E-05 42.7 2.7 29 131-159 9-37 (151)
138 PRK01156 chromosome segregatio 84.0 1.4E+02 0.003 38.3 31.5 23 560-582 191-213 (895)
139 PRK08903 DnaA regulatory inact 83.9 0.87 1.9E-05 47.8 3.2 48 107-159 13-60 (227)
140 PF04851 ResIII: Type III rest 83.9 0.71 1.5E-05 45.4 2.4 29 131-159 14-43 (184)
141 COG0593 DnaA ATPase involved i 83.7 0.67 1.5E-05 53.7 2.4 51 106-159 81-131 (408)
142 KOG0977 Nuclear envelope prote 83.7 1.1E+02 0.0025 37.1 28.0 127 516-657 54-198 (546)
143 PF06818 Fez1: Fez1; InterPro 83.5 22 0.00048 37.7 13.2 46 605-650 36-81 (202)
144 PF13514 AAA_27: AAA domain 83.4 1.6E+02 0.0036 38.7 29.3 121 618-772 798-923 (1111)
145 smart00787 Spc7 Spc7 kinetocho 83.4 30 0.00064 39.1 15.0 57 596-656 204-260 (312)
146 TIGR02538 type_IV_pilB type IV 83.4 0.95 2.1E-05 54.6 3.6 28 132-159 307-334 (564)
147 PRK08939 primosomal protein Dn 83.3 0.75 1.6E-05 51.4 2.5 50 109-159 124-174 (306)
148 KOG4643 Uncharacterized coiled 83.3 52 0.0011 42.2 17.9 91 562-658 477-569 (1195)
149 KOG0978 E3 ubiquitin ligase in 83.0 60 0.0013 40.4 18.3 174 516-749 466-639 (698)
150 PF11559 ADIP: Afadin- and alp 82.8 54 0.0012 32.7 15.3 53 516-571 33-85 (151)
151 PF08317 Spc7: Spc7 kinetochor 82.7 50 0.0011 37.3 16.7 42 613-654 222-263 (325)
152 PF12325 TMF_TATA_bd: TATA ele 82.0 47 0.001 32.5 13.9 97 517-653 15-114 (120)
153 KOG4360 Uncharacterized coiled 81.9 32 0.0007 40.9 14.7 120 701-839 171-294 (596)
154 PRK10869 recombination and rep 81.8 51 0.0011 40.1 17.2 48 519-566 172-219 (553)
155 PRK10929 putative mechanosensi 81.8 1.9E+02 0.0041 38.3 23.1 29 744-772 271-299 (1109)
156 PF10168 Nup88: Nuclear pore c 81.6 65 0.0014 40.4 18.4 115 520-652 545-663 (717)
157 PF05667 DUF812: Protein of un 81.5 48 0.001 40.7 16.8 53 715-767 431-483 (594)
158 TIGR02533 type_II_gspE general 81.2 1.4 3E-05 52.3 3.8 28 132-159 233-260 (486)
159 PRK11281 hypothetical protein; 81.1 44 0.00096 43.9 17.2 29 744-772 291-319 (1113)
160 KOG0977 Nuclear envelope prote 81.1 20 0.00044 43.2 13.2 103 702-823 41-172 (546)
161 PF12128 DUF3584: Protein of u 81.0 2.1E+02 0.0045 38.2 32.1 17 142-158 18-34 (1201)
162 PRK03992 proteasome-activating 80.8 1.4 3.1E-05 50.6 3.7 52 108-159 127-183 (389)
163 COG1340 Uncharacterized archae 80.7 1E+02 0.0023 34.6 20.9 131 516-653 53-190 (294)
164 PRK11281 hypothetical protein; 80.6 91 0.002 41.1 19.7 137 517-653 79-252 (1113)
165 PRK10436 hypothetical protein; 80.5 0.97 2.1E-05 53.3 2.2 28 132-159 209-236 (462)
166 KOG0976 Rho/Rac1-interacting s 80.2 1.8E+02 0.0038 36.9 25.9 46 608-656 267-312 (1265)
167 smart00053 DYNc Dynamin, GTPas 80.1 4.9 0.00011 43.5 7.2 53 208-277 85-137 (240)
168 cd00046 DEXDc DEAD-like helica 79.7 0.75 1.6E-05 42.1 0.8 16 144-159 3-18 (144)
169 PF05622 HOOK: HOOK protein; 79.4 0.59 1.3E-05 57.8 0.0 93 557-652 330-422 (713)
170 TIGR01242 26Sp45 26S proteasom 79.2 2.1 4.5E-05 48.6 4.3 52 108-159 118-174 (364)
171 PF12325 TMF_TATA_bd: TATA ele 79.2 23 0.00049 34.7 10.7 64 748-841 47-110 (120)
172 COG1474 CDC6 Cdc6-related prot 79.0 1.6 3.5E-05 50.0 3.3 25 135-159 35-60 (366)
173 PF08317 Spc7: Spc7 kinetochor 78.7 55 0.0012 37.0 15.3 57 595-651 211-267 (325)
174 PF15070 GOLGA2L5: Putative go 78.6 1.8E+02 0.0039 36.1 25.8 97 558-655 35-142 (617)
175 KOG1029 Endocytic adaptor prot 78.5 57 0.0012 40.8 15.7 52 558-615 436-487 (1118)
176 PF08614 ATG16: Autophagy prot 78.4 8.8 0.00019 40.1 8.3 58 594-651 82-139 (194)
177 PRK06921 hypothetical protein; 78.3 1.6 3.4E-05 47.8 2.8 35 124-159 98-135 (266)
178 PRK12422 chromosomal replicati 77.7 1.5 3.4E-05 51.4 2.7 50 107-159 106-159 (445)
179 COG1579 Zn-ribbon protein, pos 77.6 46 0.00099 36.3 13.5 54 801-854 91-144 (239)
180 PF13245 AAA_19: Part of AAA d 77.4 1.2 2.7E-05 39.6 1.4 26 133-159 3-28 (76)
181 PF10481 CENP-F_N: Cenp-F N-te 77.3 88 0.0019 34.8 15.3 68 702-769 59-133 (307)
182 TIGR00634 recN DNA repair prot 77.3 72 0.0016 38.7 16.7 48 519-566 176-223 (563)
183 PF06005 DUF904: Protein of un 77.0 8.8 0.00019 34.3 6.6 32 702-733 24-55 (72)
184 PF13401 AAA_22: AAA domain; P 77.0 0.8 1.7E-05 43.1 0.1 19 141-159 4-22 (131)
185 PF14915 CCDC144C: CCDC144C pr 76.8 1.4E+02 0.003 33.7 26.4 80 562-657 27-106 (305)
186 PTZ00454 26S protease regulato 76.4 1.8 3.8E-05 50.2 2.7 52 108-159 141-197 (398)
187 smart00382 AAA ATPases associa 76.2 1 2.2E-05 41.1 0.6 18 142-159 3-20 (148)
188 KOG0804 Cytoplasmic Zn-finger 75.9 49 0.0011 39.0 13.7 29 627-655 420-448 (493)
189 PF14662 CCDC155: Coiled-coil 75.9 1.1E+02 0.0024 32.4 15.2 123 526-654 61-191 (193)
190 PF10458 Val_tRNA-synt_C: Valy 75.8 13 0.00028 32.3 7.2 42 557-598 2-43 (66)
191 PF00270 DEAD: DEAD/DEAH box h 75.6 1.5 3.2E-05 43.0 1.5 25 133-159 8-32 (169)
192 PRK13169 DNA replication intia 75.4 4 8.7E-05 39.3 4.3 35 698-732 17-51 (110)
193 KOG4807 F-actin binding protei 75.3 1.4E+02 0.003 34.7 16.8 23 696-718 512-534 (593)
194 COG0419 SbcC ATPase involved i 75.1 2.6E+02 0.0056 36.1 30.9 24 518-541 167-190 (908)
195 PF12718 Tropomyosin_1: Tropom 75.1 47 0.001 33.3 12.0 28 555-582 17-44 (143)
196 TIGR03007 pepcterm_ChnLen poly 75.0 1.3E+02 0.0028 35.6 17.7 65 519-583 162-235 (498)
197 PRK09183 transposase/IS protei 74.8 1.6 3.4E-05 47.5 1.7 44 111-159 77-120 (259)
198 TIGR01420 pilT_fam pilus retra 74.7 1.6 3.4E-05 49.4 1.6 27 133-159 114-140 (343)
199 cd01131 PilT Pilus retraction 74.6 1.2 2.6E-05 46.3 0.6 19 141-159 1-19 (198)
200 PF00437 T2SE: Type II/IV secr 74.0 1 2.2E-05 48.6 -0.0 19 141-159 127-145 (270)
201 TIGR02525 plasmid_TraJ plasmid 74.0 1.8 3.9E-05 49.8 1.9 20 140-159 148-167 (372)
202 PF06120 Phage_HK97_TLTM: Tail 73.7 91 0.002 35.2 14.9 41 616-656 129-169 (301)
203 PF12846 AAA_10: AAA-like doma 73.6 1.3 2.8E-05 47.3 0.6 19 141-159 1-19 (304)
204 PF06120 Phage_HK97_TLTM: Tail 73.5 1.3E+02 0.0028 34.0 16.0 33 621-653 141-173 (301)
205 KOG1029 Endocytic adaptor prot 73.3 2.6E+02 0.0057 35.4 24.7 29 701-729 484-512 (1118)
206 PF04156 IncA: IncA protein; 73.2 36 0.00077 35.0 11.1 33 621-653 151-183 (191)
207 KOG0994 Extracellular matrix g 73.1 3.2E+02 0.0069 36.2 26.1 30 823-852 1706-1735(1758)
208 COG1484 DnaC DNA replication p 73.0 2.9 6.2E-05 45.5 3.1 49 108-159 75-123 (254)
209 PF06156 DUF972: Protein of un 72.8 5.1 0.00011 38.4 4.3 33 699-731 18-50 (107)
210 PF10186 Atg14: UV radiation r 72.7 74 0.0016 34.5 14.0 68 705-772 22-90 (302)
211 PF13604 AAA_30: AAA domain; P 72.7 1.9 4.2E-05 44.8 1.6 28 132-159 9-36 (196)
212 TIGR02524 dot_icm_DotB Dot/Icm 72.4 1.9 4.2E-05 49.2 1.7 20 140-159 133-152 (358)
213 PF05701 WEMBL: Weak chloropla 72.4 2.3E+02 0.005 34.3 23.5 43 713-755 361-403 (522)
214 PTZ00361 26 proteosome regulat 72.3 4.3 9.2E-05 47.8 4.5 90 70-159 128-235 (438)
215 PF09787 Golgin_A5: Golgin sub 72.3 2.3E+02 0.0049 34.2 26.5 53 818-871 339-391 (511)
216 COG0497 RecN ATPase involved i 72.3 1.6E+02 0.0034 36.0 17.3 48 519-566 172-219 (557)
217 PF15397 DUF4618: Domain of un 71.9 1.2E+02 0.0026 33.6 14.9 138 514-656 77-221 (258)
218 PF10481 CENP-F_N: Cenp-F N-te 71.8 1.5E+02 0.0033 33.0 15.4 148 557-723 23-182 (307)
219 TIGR00631 uvrb excinuclease AB 71.6 3.7 7.9E-05 50.6 3.9 66 109-179 2-97 (655)
220 KOG0243 Kinesin-like protein [ 71.2 52 0.0011 42.5 13.5 74 560-633 442-516 (1041)
221 PF01935 DUF87: Domain of unkn 71.1 1.7 3.7E-05 45.6 0.8 16 144-159 26-41 (229)
222 PF11559 ADIP: Afadin- and alp 70.8 70 0.0015 31.9 12.2 53 517-582 51-103 (151)
223 cd01129 PulE-GspE PulE/GspE Th 70.7 2.4 5.3E-05 46.3 1.9 27 133-159 72-98 (264)
224 PF05673 DUF815: Protein of un 70.6 2.2 4.7E-05 46.5 1.5 129 108-245 23-156 (249)
225 PF10211 Ax_dynein_light: Axon 70.6 20 0.00043 37.6 8.5 65 705-769 122-187 (189)
226 TIGR00634 recN DNA repair prot 70.0 2.6E+02 0.0057 34.0 20.0 40 551-590 167-206 (563)
227 PF01637 Arch_ATPase: Archaeal 70.0 2.3 5E-05 43.4 1.4 30 130-159 9-38 (234)
228 PF04111 APG6: Autophagy prote 70.0 55 0.0012 37.0 12.4 32 625-656 96-127 (314)
229 COG5008 PilU Tfp pilus assembl 69.8 3 6.6E-05 46.0 2.3 31 129-159 115-145 (375)
230 PLN03188 kinesin-12 family pro 69.7 3.9E+02 0.0084 35.8 24.7 37 622-658 968-1009(1320)
231 PF03962 Mnd1: Mnd1 family; I 69.7 54 0.0012 34.4 11.5 75 574-656 13-97 (188)
232 smart00787 Spc7 Spc7 kinetocho 69.6 77 0.0017 35.9 13.4 52 602-653 227-282 (312)
233 PF01695 IstB_IS21: IstB-like 69.6 2.7 5.8E-05 43.2 1.8 18 142-159 48-65 (178)
234 PF12761 End3: Actin cytoskele 69.5 55 0.0012 34.7 11.3 99 517-649 95-195 (195)
235 KOG4302 Microtubule-associated 69.2 55 0.0012 40.6 12.8 63 595-657 105-182 (660)
236 KOG0989 Replication factor C, 68.9 3.9 8.4E-05 46.0 2.9 36 124-159 39-75 (346)
237 PF06156 DUF972: Protein of un 68.8 24 0.00052 33.9 7.9 57 593-656 1-57 (107)
238 TIGR03015 pepcterm_ATPase puta 68.6 3 6.4E-05 44.5 2.0 23 137-159 39-61 (269)
239 PLN00020 ribulose bisphosphate 68.5 3.9 8.6E-05 47.2 3.0 53 107-159 110-166 (413)
240 PF13870 DUF4201: Domain of un 68.2 1.5E+02 0.0032 30.4 20.9 85 550-654 40-124 (177)
241 PF05911 DUF869: Plant protein 67.9 3.1E+02 0.0068 34.9 19.2 191 546-775 13-206 (769)
242 PRK10929 putative mechanosensi 67.8 2.3E+02 0.005 37.6 18.6 22 752-773 258-279 (1109)
243 TIGR03007 pepcterm_ChnLen poly 67.4 2.4E+02 0.0052 33.4 17.7 71 516-586 202-295 (498)
244 KOG2991 Splicing regulator [RN 67.3 2.1E+02 0.0045 31.8 17.5 56 528-583 139-201 (330)
245 PF09755 DUF2046: Uncharacteri 67.2 2.3E+02 0.0049 32.2 23.1 67 696-762 171-246 (310)
246 TIGR02782 TrbB_P P-type conjug 66.9 2.7 5.8E-05 46.8 1.3 28 131-159 123-150 (299)
247 KOG0964 Structural maintenance 66.8 3.9E+02 0.0085 34.8 23.1 71 702-772 417-494 (1200)
248 PF09738 DUF2051: Double stran 66.7 2.1E+02 0.0045 32.4 15.9 132 513-654 107-245 (302)
249 PF00004 AAA: ATPase family as 66.7 2.1 4.4E-05 40.0 0.3 16 144-159 1-16 (132)
250 TIGR01843 type_I_hlyD type I s 66.6 82 0.0018 35.8 13.2 27 626-652 244-270 (423)
251 PF00769 ERM: Ezrin/radixin/mo 66.4 93 0.002 34.0 12.9 20 830-849 192-211 (246)
252 PRK12704 phosphodiesterase; Pr 66.4 1.3E+02 0.0029 36.4 15.3 56 602-657 91-146 (520)
253 PF04156 IncA: IncA protein; 66.4 1.3E+02 0.0029 30.8 13.5 25 559-583 123-147 (191)
254 KOG0996 Structural maintenance 66.1 4.3E+02 0.0094 35.1 27.3 117 514-637 263-382 (1293)
255 PF05970 PIF1: PIF1-like helic 66.1 3.9 8.6E-05 46.6 2.5 38 118-159 3-40 (364)
256 PRK12402 replication factor C 66.0 4.4 9.6E-05 44.6 2.8 43 109-159 12-54 (337)
257 PF13479 AAA_24: AAA domain 65.7 3.8 8.2E-05 43.1 2.1 21 141-161 3-23 (213)
258 PF13086 AAA_11: AAA domain; P 65.1 3.1 6.7E-05 42.5 1.2 17 143-159 19-35 (236)
259 PF15254 CCDC14: Coiled-coil d 64.9 1.6E+02 0.0035 37.1 15.4 54 602-655 503-556 (861)
260 smart00487 DEXDc DEAD-like hel 64.4 4.6 9.9E-05 39.4 2.3 24 135-159 19-42 (201)
261 KOG0018 Structural maintenance 64.3 3.9E+02 0.0085 35.1 18.9 20 517-536 651-670 (1141)
262 TIGR01817 nifA Nif-specific re 64.3 4.4 9.4E-05 48.5 2.5 110 108-223 192-318 (534)
263 PF13863 DUF4200: Domain of un 64.2 73 0.0016 30.5 10.5 35 621-655 74-108 (126)
264 KOG0979 Structural maintenance 64.2 1.9E+02 0.0042 37.4 16.2 31 517-547 180-210 (1072)
265 PF00448 SRP54: SRP54-type pro 63.8 2.4 5.2E-05 44.3 0.1 17 143-159 3-19 (196)
266 KOG0946 ER-Golgi vesicle-tethe 63.5 4.1E+02 0.009 33.9 23.4 24 628-651 737-760 (970)
267 PF07106 TBPIP: Tat binding pr 63.4 31 0.00067 35.1 8.1 61 516-580 77-137 (169)
268 TIGR03185 DNA_S_dndD DNA sulfu 63.1 3.7E+02 0.0081 33.3 27.7 32 625-656 259-290 (650)
269 PRK13169 DNA replication intia 63.0 36 0.00078 32.9 7.9 54 594-654 2-55 (110)
270 PF13191 AAA_16: AAA ATPase do 62.9 2.6 5.6E-05 41.8 0.2 23 137-159 20-42 (185)
271 PRK13894 conjugal transfer ATP 62.9 3.4 7.3E-05 46.6 1.1 28 131-159 139-166 (319)
272 PF13207 AAA_17: AAA domain; P 62.5 2.8 6E-05 39.1 0.3 17 143-159 1-17 (121)
273 KOG0018 Structural maintenance 62.5 4.1E+02 0.0089 34.9 18.6 104 550-653 315-420 (1141)
274 PF15294 Leu_zip: Leucine zipp 62.2 49 0.0011 36.9 9.8 27 557-583 130-156 (278)
275 KOG4360 Uncharacterized coiled 62.2 1.5E+02 0.0033 35.7 14.0 98 524-647 204-301 (596)
276 TIGR02338 gimC_beta prefoldin, 62.0 55 0.0012 31.1 9.0 28 557-584 8-35 (110)
277 PF00580 UvrD-helicase: UvrD/R 61.9 3.2 6.9E-05 44.6 0.7 20 140-159 12-31 (315)
278 COG1222 RPT1 ATP-dependent 26S 61.7 7.9 0.00017 44.4 3.7 91 67-157 93-201 (406)
279 PF05557 MAD: Mitotic checkpoi 61.7 2.6 5.7E-05 52.3 0.0 26 748-773 250-278 (722)
280 PF14197 Cep57_CLD_2: Centroso 61.3 25 0.00054 31.2 6.0 56 516-571 3-66 (69)
281 PF03962 Mnd1: Mnd1 family; I 61.0 59 0.0013 34.1 9.8 51 557-607 67-117 (188)
282 TIGR01005 eps_transp_fam exopo 60.7 2.3E+02 0.0051 35.5 16.7 31 517-547 236-266 (754)
283 PHA02544 44 clamp loader, smal 60.7 4.7 0.0001 44.4 1.7 22 138-159 39-61 (316)
284 PF07106 TBPIP: Tat binding pr 60.1 85 0.0018 31.9 10.6 67 702-773 71-137 (169)
285 PRK12723 flagellar biosynthesi 60.1 7.3 0.00016 45.2 3.2 19 141-159 174-192 (388)
286 PHA00729 NTP-binding motif con 60.0 6 0.00013 42.6 2.3 32 129-160 5-36 (226)
287 TIGR02231 conserved hypothetic 59.8 63 0.0014 38.7 11.1 35 622-656 139-173 (525)
288 cd01130 VirB11-like_ATPase Typ 59.6 5.6 0.00012 40.7 2.0 29 130-159 15-43 (186)
289 PF10498 IFT57: Intra-flagella 59.4 1.4E+02 0.003 34.6 13.1 86 557-648 264-355 (359)
290 PF06309 Torsin: Torsin; Inte 59.4 4.7 0.0001 39.8 1.3 15 144-158 55-70 (127)
291 PF02456 Adeno_IVa2: Adenoviru 58.9 4.4 9.6E-05 45.6 1.1 43 298-347 274-320 (369)
292 TIGR03499 FlhF flagellar biosy 58.9 8.2 0.00018 42.5 3.2 17 143-159 196-212 (282)
293 PF12072 DUF3552: Domain of un 58.8 1.3E+02 0.0029 31.6 12.0 76 562-657 67-142 (201)
294 PF00910 RNA_helicase: RNA hel 58.7 3.5 7.6E-05 38.5 0.3 16 144-159 1-16 (107)
295 KOG2751 Beclin-like protein [S 58.5 2.1E+02 0.0045 33.9 14.2 118 520-651 145-262 (447)
296 PRK13833 conjugal transfer pro 58.3 4.9 0.00011 45.4 1.4 27 132-159 136-162 (323)
297 KOG4673 Transcription factor T 58.2 4.7E+02 0.01 32.8 25.6 189 622-849 440-634 (961)
298 PF13671 AAA_33: AAA domain; P 58.1 3.8 8.1E-05 39.2 0.4 16 144-159 2-17 (143)
299 PF02403 Seryl_tRNA_N: Seryl-t 58.0 97 0.0021 29.0 9.9 71 516-586 27-101 (108)
300 TIGR03319 YmdA_YtgF conserved 57.9 2.3E+02 0.005 34.3 15.2 52 606-657 89-140 (514)
301 TIGR00635 ruvB Holliday juncti 57.8 6.3 0.00014 43.1 2.1 40 119-159 7-48 (305)
302 PF02562 PhoH: PhoH-like prote 57.7 6.3 0.00014 41.8 2.0 20 140-159 18-37 (205)
303 cd00268 DEADc DEAD-box helicas 57.5 6.8 0.00015 39.8 2.2 23 134-158 31-53 (203)
304 PF14362 DUF4407: Domain of un 57.4 45 0.00098 36.9 8.7 41 734-774 124-164 (301)
305 KOG3850 Predicted membrane pro 57.0 1E+02 0.0022 35.8 11.2 47 592-655 291-337 (455)
306 PRK05022 anaerobic nitric oxid 56.9 7 0.00015 46.6 2.5 108 110-223 185-309 (509)
307 PTZ00121 MAEBL; Provisional 56.8 78 0.0017 42.3 11.3 101 736-846 1575-1680(2084)
308 PTZ00424 helicase 45; Provisio 56.7 6 0.00013 44.9 1.8 25 133-159 59-83 (401)
309 TIGR03752 conj_TIGR03752 integ 56.5 1.1E+02 0.0024 36.5 11.9 89 513-654 54-142 (472)
310 KOG2543 Origin recognition com 56.4 4.3 9.3E-05 46.8 0.5 70 143-221 32-106 (438)
311 PF03915 AIP3: Actin interacti 56.4 1.6E+02 0.0035 34.8 13.2 300 504-868 71-414 (424)
312 KOG0963 Transcription factor/C 56.4 4.8E+02 0.01 32.4 23.0 35 702-736 241-275 (629)
313 PRK13900 type IV secretion sys 56.3 6.7 0.00014 44.4 2.0 29 130-159 150-178 (332)
314 PRK00106 hypothetical protein; 56.2 4.2E+02 0.009 32.5 16.9 55 603-657 107-161 (535)
315 TIGR02894 DNA_bind_RsfA transc 56.2 51 0.0011 33.9 8.0 52 605-656 88-139 (161)
316 PRK03947 prefoldin subunit alp 56.0 70 0.0015 31.4 8.9 29 622-650 109-137 (140)
317 PF09789 DUF2353: Uncharacteri 55.9 1.6E+02 0.0034 33.7 12.5 130 516-652 84-227 (319)
318 PF08172 CASP_C: CASP C termin 55.7 1.6E+02 0.0035 32.4 12.3 31 556-586 3-33 (248)
319 PF01576 Myosin_tail_1: Myosin 55.6 3.9 8.4E-05 52.0 0.0 151 702-863 270-420 (859)
320 PRK15422 septal ring assembly 55.5 16 0.00035 33.2 3.9 32 702-733 24-62 (79)
321 PF13514 AAA_27: AAA domain 55.1 6.4E+02 0.014 33.4 33.3 65 702-769 807-871 (1111)
322 PF01580 FtsK_SpoIIIE: FtsK/Sp 55.0 4.2 9E-05 42.0 0.1 17 143-159 40-56 (205)
323 PF03215 Rad17: Rad17 cell cyc 54.7 7.3 0.00016 46.8 2.1 31 129-159 31-63 (519)
324 PF10186 Atg14: UV radiation r 54.7 3.1E+02 0.0067 29.7 16.5 34 621-654 119-152 (302)
325 PRK11776 ATP-dependent RNA hel 54.5 7.5 0.00016 45.4 2.1 23 134-158 36-58 (460)
326 TIGR02903 spore_lon_C ATP-depe 54.3 6.7 0.00015 48.0 1.8 43 109-159 151-193 (615)
327 PRK13764 ATPase; Provisional 54.1 6.2 0.00013 48.2 1.4 21 139-159 255-275 (602)
328 PRK13851 type IV secretion sys 54.1 5.1 0.00011 45.7 0.6 28 131-159 153-180 (344)
329 PRK10884 SH3 domain-containing 54.0 51 0.0011 35.1 8.0 72 700-774 97-168 (206)
330 PF01920 Prefoldin_2: Prefoldi 53.9 1.1E+02 0.0025 28.0 9.5 27 557-583 3-29 (106)
331 PRK10820 DNA-binding transcrip 53.9 7.1 0.00015 46.7 1.8 111 107-223 199-326 (520)
332 PF07728 AAA_5: AAA domain (dy 53.6 4.6 0.0001 38.8 0.2 16 144-159 2-17 (139)
333 PF05266 DUF724: Protein of un 53.4 2E+02 0.0043 30.4 12.1 18 635-652 159-176 (190)
334 PF14988 DUF4515: Domain of un 53.3 3.1E+02 0.0067 29.3 16.6 31 737-770 144-174 (206)
335 PRK11388 DNA-binding transcrip 53.2 9.7 0.00021 46.5 2.9 110 108-223 321-444 (638)
336 PRK10361 DNA recombination pro 53.2 3.3E+02 0.0072 32.8 15.2 58 592-649 135-193 (475)
337 KOG0992 Uncharacterized conser 53.2 4.5E+02 0.0098 31.8 15.8 22 526-547 232-253 (613)
338 TIGR01241 FtsH_fam ATP-depende 53.1 6 0.00013 46.9 1.0 51 108-159 51-106 (495)
339 COG5185 HEC1 Protein involved 52.9 4.8E+02 0.01 31.4 20.8 60 706-772 371-430 (622)
340 COG4962 CpaF Flp pilus assembl 52.8 7.4 0.00016 44.4 1.6 28 131-159 164-191 (355)
341 PF00063 Myosin_head: Myosin h 52.8 8.1 0.00017 47.8 2.1 37 122-158 66-102 (689)
342 PF10473 CENP-F_leu_zip: Leuci 52.7 2.6E+02 0.0057 28.2 15.1 83 554-642 19-101 (140)
343 PF06414 Zeta_toxin: Zeta toxi 52.6 6 0.00013 40.9 0.8 19 141-159 15-33 (199)
344 PRK06547 hypothetical protein; 52.5 9.7 0.00021 39.0 2.3 29 131-159 5-33 (172)
345 PF13238 AAA_18: AAA domain; P 52.1 5.3 0.00011 37.0 0.3 16 144-159 1-16 (129)
346 TIGR02881 spore_V_K stage V sp 51.9 13 0.00028 40.2 3.3 18 142-159 43-60 (261)
347 PF06048 DUF927: Domain of unk 51.8 11 0.00024 41.5 2.8 33 126-159 179-211 (286)
348 PF09744 Jnk-SapK_ap_N: JNK_SA 51.5 2.9E+02 0.0063 28.4 13.4 25 702-726 88-112 (158)
349 COG2433 Uncharacterized conser 51.4 1.1E+02 0.0024 37.5 10.9 47 789-840 598-646 (652)
350 PRK11192 ATP-dependent RNA hel 51.4 8.6 0.00019 44.4 2.0 24 133-158 32-55 (434)
351 PRK13342 recombination factor 51.4 7.4 0.00016 45.1 1.4 24 136-159 31-54 (413)
352 PF14282 FlxA: FlxA-like prote 51.2 1.3E+02 0.0029 28.6 9.6 62 515-585 16-77 (106)
353 PF14362 DUF4407: Domain of un 51.2 2.2E+02 0.0048 31.5 12.9 32 551-582 134-165 (301)
354 PF06785 UPF0242: Uncharacteri 51.0 1.2E+02 0.0026 34.6 10.4 115 520-656 58-176 (401)
355 PF10267 Tmemb_cc2: Predicted 50.7 89 0.0019 36.6 9.8 30 625-657 262-291 (395)
356 PF07724 AAA_2: AAA domain (Cd 50.6 6 0.00013 40.5 0.4 18 142-159 4-21 (171)
357 KOG1962 B-cell receptor-associ 50.4 1.2E+02 0.0026 32.7 10.0 47 605-651 163-209 (216)
358 CHL00081 chlI Mg-protoporyphyr 50.1 8.9 0.00019 43.9 1.7 44 108-159 13-56 (350)
359 PRK14722 flhF flagellar biosyn 50.0 6.8 0.00015 45.2 0.8 19 141-159 137-155 (374)
360 PRK10536 hypothetical protein; 49.9 8.2 0.00018 42.5 1.4 42 108-159 51-92 (262)
361 COG1223 Predicted ATPase (AAA+ 49.6 6.8 0.00015 43.3 0.7 19 141-159 151-169 (368)
362 COG1419 FlhF Flagellar GTP-bin 49.3 13 0.00028 43.3 2.9 85 122-221 180-278 (407)
363 KOG0982 Centrosomal protein Nu 49.3 3.1E+02 0.0066 32.5 13.5 211 592-847 202-423 (502)
364 TIGR03185 DNA_S_dndD DNA sulfu 49.2 6.1E+02 0.013 31.4 32.2 91 555-653 258-355 (650)
365 PLN03025 replication factor C 49.2 13 0.00028 41.5 2.8 18 142-159 35-52 (319)
366 PRK00440 rfc replication facto 49.1 12 0.00027 40.7 2.7 22 138-159 35-56 (319)
367 PRK04837 ATP-dependent RNA hel 48.9 9.7 0.00021 44.0 1.9 24 133-158 39-62 (423)
368 PRK09343 prefoldin subunit bet 48.9 1.1E+02 0.0023 29.9 8.8 50 598-657 65-114 (121)
369 PF01486 K-box: K-box region; 48.9 1.9E+02 0.004 27.0 10.1 85 562-652 15-99 (100)
370 KOG0995 Centromere-associated 48.9 6E+02 0.013 31.3 27.3 282 520-849 261-579 (581)
371 PF12240 Angiomotin_C: Angiomo 48.8 72 0.0016 34.0 7.9 69 762-847 31-99 (205)
372 PRK11608 pspF phage shock prot 48.3 11 0.00023 42.5 2.0 107 111-223 5-128 (326)
373 PF00261 Tropomyosin: Tropomyo 48.0 3.9E+02 0.0084 28.8 18.7 200 520-772 3-217 (237)
374 PF10174 Cast: RIM-binding pro 47.9 7.1E+02 0.015 31.9 30.9 217 517-772 113-349 (775)
375 PF14257 DUF4349: Domain of un 47.7 73 0.0016 34.6 8.2 37 547-583 157-193 (262)
376 PF14282 FlxA: FlxA-like prote 47.4 69 0.0015 30.5 7.0 28 627-654 50-77 (106)
377 PF15619 Lebercilin: Ciliary p 47.3 3.7E+02 0.0081 28.4 19.8 84 557-653 66-150 (194)
378 PF06657 Cep57_MT_bd: Centroso 47.3 88 0.0019 28.4 7.3 57 523-579 15-77 (79)
379 PF13870 DUF4201: Domain of un 47.1 3.3E+02 0.0072 27.8 14.4 76 559-653 6-81 (177)
380 PLN03229 acetyl-coenzyme A car 47.0 2.5E+02 0.0055 35.4 13.2 94 548-658 639-735 (762)
381 PRK10590 ATP-dependent RNA hel 47.0 12 0.00026 43.8 2.2 25 133-159 32-56 (456)
382 PF10267 Tmemb_cc2: Predicted 46.9 5.5E+02 0.012 30.3 22.6 90 516-616 210-303 (395)
383 TIGR03689 pup_AAA proteasome A 46.2 12 0.00026 44.9 2.1 17 143-159 218-234 (512)
384 TIGR00348 hsdR type I site-spe 46.1 15 0.00032 45.5 2.9 31 128-159 246-281 (667)
385 PRK14961 DNA polymerase III su 45.8 14 0.00031 42.0 2.6 42 110-159 14-56 (363)
386 COG4467 Regulator of replicati 45.4 58 0.0013 31.4 6.0 54 593-653 1-54 (114)
387 PHA02244 ATPase-like protein 45.4 19 0.0004 41.8 3.3 46 109-159 92-137 (383)
388 PRK10416 signal recognition pa 45.2 18 0.00039 40.8 3.2 18 142-159 115-132 (318)
389 PRK00080 ruvB Holliday junctio 45.2 15 0.00032 41.1 2.5 18 142-159 52-69 (328)
390 smart00763 AAA_PrkA PrkA AAA d 45.1 21 0.00046 41.0 3.8 47 108-159 45-96 (361)
391 PF05496 RuvB_N: Holliday junc 45.1 21 0.00045 38.7 3.5 44 115-159 23-68 (233)
392 cd00632 Prefoldin_beta Prefold 44.9 1.9E+02 0.004 27.2 9.5 44 600-646 59-102 (105)
393 KOG4593 Mitotic checkpoint pro 44.8 7.4E+02 0.016 31.2 25.1 130 518-651 172-308 (716)
394 PF09738 DUF2051: Double stran 44.8 5.2E+02 0.011 29.4 16.9 32 542-573 95-126 (302)
395 PRK04195 replication factor C 44.7 14 0.00031 43.7 2.4 30 130-159 27-57 (482)
396 smart00242 MYSc Myosin. Large 44.6 18 0.0004 44.8 3.4 38 122-159 73-110 (677)
397 PF14992 TMCO5: TMCO5 family 44.3 5.1E+02 0.011 29.2 14.4 30 561-590 20-49 (280)
398 TIGR02902 spore_lonB ATP-depen 44.0 14 0.00031 44.5 2.3 43 108-158 61-103 (531)
399 PF14197 Cep57_CLD_2: Centroso 44.0 99 0.0021 27.5 6.9 64 702-772 4-67 (69)
400 TIGR02329 propionate_PrpR prop 43.9 12 0.00026 45.0 1.7 110 109-224 209-336 (526)
401 PF03961 DUF342: Protein of un 43.8 1.1E+02 0.0024 36.1 9.5 29 626-654 380-408 (451)
402 PF05729 NACHT: NACHT domain 43.8 10 0.00022 36.6 0.8 17 143-159 2-18 (166)
403 PRK11331 5-methylcytosine-spec 43.7 14 0.00029 43.8 2.0 38 330-371 320-359 (459)
404 PRK00771 signal recognition pa 43.7 23 0.00049 41.8 3.8 19 141-159 95-113 (437)
405 PF15066 CAGE1: Cancer-associa 43.7 6.6E+02 0.014 30.3 18.0 200 595-849 302-511 (527)
406 TIGR01243 CDC48 AAA family ATP 43.5 11 0.00025 46.9 1.4 52 108-159 174-230 (733)
407 PF02050 FliJ: Flagellar FliJ 43.3 2.6E+02 0.0056 25.5 11.4 85 556-655 2-86 (123)
408 PF06785 UPF0242: Uncharacteri 43.2 1.1E+02 0.0025 34.8 8.8 121 621-763 85-219 (401)
409 PF09457 RBD-FIP: FIP domain ; 43.2 47 0.001 27.6 4.4 29 555-583 3-31 (48)
410 cd01120 RecA-like_NTPases RecA 43.0 9.7 0.00021 36.4 0.6 16 144-159 2-17 (165)
411 PF13863 DUF4200: Domain of un 43.0 2.6E+02 0.0056 26.7 10.4 30 618-647 78-107 (126)
412 KOG4593 Mitotic checkpoint pro 42.9 6.4E+02 0.014 31.7 15.5 97 557-654 195-294 (716)
413 PF12775 AAA_7: P-loop contain 42.9 12 0.00025 41.3 1.2 19 141-159 33-51 (272)
414 COG1219 ClpX ATP-dependent pro 42.6 11 0.00024 42.8 0.9 18 141-158 97-114 (408)
415 PF13166 AAA_13: AAA domain 42.6 7.5E+02 0.016 30.6 22.7 17 142-158 17-33 (712)
416 TIGR00614 recQ_fam ATP-depende 42.6 16 0.00034 43.0 2.4 26 132-159 19-44 (470)
417 TIGR02680 conserved hypothetic 42.5 1.1E+03 0.023 32.3 26.3 41 517-557 748-788 (1353)
418 COG1201 Lhr Lhr-like helicases 42.4 15 0.00033 46.3 2.2 25 133-159 31-55 (814)
419 PF07058 Myosin_HC-like: Myosi 41.8 5.8E+02 0.013 29.1 14.2 70 701-789 33-102 (351)
420 PF15450 DUF4631: Domain of un 41.7 6.6E+02 0.014 30.6 15.1 133 517-658 336-471 (531)
421 TIGR02237 recomb_radB DNA repa 41.6 12 0.00027 38.5 1.1 26 134-159 2-30 (209)
422 PRK14974 cell division protein 41.5 25 0.00055 40.0 3.7 19 141-159 140-158 (336)
423 COG1198 PriA Primosomal protei 41.4 7.8 0.00017 48.3 -0.4 47 120-189 202-248 (730)
424 TIGR02640 gas_vesic_GvpN gas v 41.0 21 0.00045 38.8 2.8 30 128-159 10-39 (262)
425 TIGR01000 bacteriocin_acc bact 41.0 3.8E+02 0.0083 31.6 13.4 122 518-652 172-315 (457)
426 cd01384 MYSc_type_XI Myosin mo 40.9 23 0.0005 44.0 3.5 37 122-159 69-106 (674)
427 PRK05580 primosome assembly pr 40.8 14 0.0003 45.8 1.6 18 142-159 163-180 (679)
428 PRK13341 recombination factor 40.7 17 0.00036 45.5 2.3 22 138-159 49-70 (725)
429 PRK11448 hsdR type I restricti 40.6 17 0.00037 47.6 2.4 32 126-158 419-450 (1123)
430 TIGR00293 prefoldin, archaeal 40.3 2.2E+02 0.0048 27.3 9.5 27 557-583 4-30 (126)
431 cd00124 MYSc Myosin motor doma 40.3 23 0.00051 43.9 3.4 37 122-159 67-104 (679)
432 PF05483 SCP-1: Synaptonemal c 40.1 8.7E+02 0.019 30.7 30.8 230 560-862 514-760 (786)
433 cd01385 MYSc_type_IX Myosin mo 40.0 25 0.00054 43.8 3.6 37 122-159 75-112 (692)
434 PRK14962 DNA polymerase III su 40.0 19 0.00042 42.8 2.5 43 109-159 11-54 (472)
435 PF05700 BCAS2: Breast carcino 39.9 2.3E+02 0.0049 30.4 10.4 77 554-653 138-214 (221)
436 cd02021 GntK Gluconate kinase 39.9 12 0.00025 36.5 0.6 16 144-159 2-17 (150)
437 PLN03229 acetyl-coenzyme A car 39.8 9.1E+02 0.02 30.8 17.6 47 523-569 484-545 (762)
438 TIGR01359 UMP_CMP_kin_fam UMP- 39.6 13 0.00027 37.4 0.8 15 144-158 2-16 (183)
439 TIGR03017 EpsF chain length de 39.6 6.6E+02 0.014 29.1 15.4 27 630-656 337-363 (444)
440 cd01383 MYSc_type_VIII Myosin 39.5 27 0.00059 43.4 3.7 37 122-159 73-110 (677)
441 cd01378 MYSc_type_I Myosin mot 39.3 26 0.00056 43.6 3.5 37 122-159 67-104 (674)
442 CHL00181 cbbX CbbX; Provisiona 39.2 17 0.00038 40.2 1.9 16 144-159 62-77 (287)
443 cd01123 Rad51_DMC1_radA Rad51_ 39.1 16 0.00035 38.2 1.6 30 130-159 5-37 (235)
444 PRK04328 hypothetical protein; 39.1 18 0.0004 39.0 2.0 28 130-157 9-39 (249)
445 TIGR03158 cas3_cyano CRISPR-as 39.1 19 0.0004 41.0 2.1 26 134-159 7-32 (357)
446 PF10236 DAP3: Mitochondrial r 39.0 20 0.00042 40.2 2.3 24 136-159 18-41 (309)
447 PF13476 AAA_23: AAA domain; P 38.9 11 0.00024 37.6 0.3 18 142-159 20-37 (202)
448 PF00735 Septin: Septin; Inte 38.8 7.8 0.00017 42.9 -0.9 21 138-158 1-21 (281)
449 cd01382 MYSc_type_VI Myosin mo 38.8 25 0.00055 44.0 3.4 36 123-159 73-109 (717)
450 TIGR01618 phage_P_loop phage n 38.7 12 0.00025 40.2 0.4 19 141-159 12-30 (220)
451 PRK11634 ATP-dependent RNA hel 38.6 17 0.00037 44.7 1.9 24 133-158 37-60 (629)
452 cd01381 MYSc_type_VII Myosin m 38.5 28 0.0006 43.3 3.7 37 122-159 67-104 (671)
453 cd01387 MYSc_type_XV Myosin mo 38.5 27 0.00058 43.4 3.5 37 122-159 68-105 (677)
454 PRK06067 flagellar accessory p 38.5 20 0.00044 37.8 2.2 30 130-159 11-43 (234)
455 CHL00176 ftsH cell division pr 38.4 12 0.00027 46.0 0.7 18 142-159 217-234 (638)
456 TIGR02788 VirB11 P-type DNA tr 38.3 21 0.00045 39.8 2.3 30 129-159 133-162 (308)
457 TIGR01843 type_I_hlyD type I s 38.2 6.4E+02 0.014 28.6 21.0 25 745-769 246-270 (423)
458 PRK10865 protein disaggregatio 38.1 17 0.00036 46.4 1.7 18 142-159 599-616 (857)
459 PF08647 BRE1: BRE1 E3 ubiquit 38.1 3.4E+02 0.0074 25.3 11.0 79 557-652 8-90 (96)
460 PRK05703 flhF flagellar biosyn 38.0 13 0.00027 43.6 0.6 18 142-159 222-239 (424)
461 PHA02624 large T antigen; Prov 37.9 24 0.00052 43.3 2.9 29 131-159 419-449 (647)
462 PRK00131 aroK shikimate kinase 37.8 14 0.0003 36.3 0.8 18 142-159 5-22 (175)
463 PF12329 TMF_DNA_bd: TATA elem 37.7 2.7E+02 0.0058 25.0 8.8 28 519-546 13-40 (74)
464 COG2433 Uncharacterized conser 37.7 4.1E+02 0.0089 32.9 12.7 76 557-649 434-509 (652)
465 cd01377 MYSc_type_II Myosin mo 37.6 28 0.00061 43.4 3.5 36 122-158 72-108 (693)
466 KOG4466 Component of histone d 37.6 5.5E+02 0.012 28.8 12.7 108 515-649 20-130 (291)
467 PHA03011 hypothetical protein; 37.6 1.2E+02 0.0027 28.9 6.8 60 594-653 58-117 (120)
468 TIGR00376 DNA helicase, putati 37.4 18 0.00039 44.6 1.8 17 143-159 175-191 (637)
469 PF06810 Phage_GP20: Phage min 37.2 1.6E+02 0.0035 29.9 8.3 52 518-572 20-71 (155)
470 PF13173 AAA_14: AAA domain 37.2 14 0.00031 35.3 0.8 18 142-159 3-20 (128)
471 PRK09270 nucleoside triphospha 37.0 29 0.00063 36.7 3.1 37 123-159 14-51 (229)
472 cd00464 SK Shikimate kinase (S 36.9 15 0.00032 35.6 0.8 17 143-159 1-17 (154)
473 PRK10361 DNA recombination pro 36.9 8.4E+02 0.018 29.5 20.4 19 749-767 169-187 (475)
474 PRK09361 radB DNA repair and r 36.9 19 0.00041 37.7 1.7 30 130-159 9-41 (225)
475 PF07989 Microtub_assoc: Micro 36.7 2.6E+02 0.0057 25.2 8.6 26 558-583 6-31 (75)
476 KOG3859 Septins (P-loop GTPase 36.5 17 0.00038 40.4 1.3 28 132-159 32-60 (406)
477 PF07111 HCR: Alpha helical co 36.4 5E+02 0.011 32.7 13.3 137 559-724 127-263 (739)
478 PRK06995 flhF flagellar biosyn 36.4 14 0.0003 44.1 0.6 18 142-159 257-274 (484)
479 PRK04537 ATP-dependent RNA hel 36.3 21 0.00044 43.4 2.0 24 133-158 40-63 (572)
480 KOG0999 Microtubule-associated 36.3 9.1E+02 0.02 29.8 19.6 186 594-848 9-198 (772)
481 PF04880 NUDE_C: NUDE protein, 36.2 38 0.00082 35.0 3.6 46 801-850 2-47 (166)
482 COG4550 Predicted membrane pro 36.1 2.6E+02 0.0057 27.4 8.8 65 538-610 44-112 (120)
483 cd01380 MYSc_type_V Myosin mot 36.0 30 0.00066 43.1 3.4 37 122-159 67-104 (691)
484 PRK10917 ATP-dependent DNA hel 35.8 24 0.00053 43.7 2.6 27 133-159 274-300 (681)
485 KOG0953 Mitochondrial RNA heli 35.6 17 0.00036 43.9 1.1 17 143-159 193-209 (700)
486 TIGR02030 BchI-ChlI magnesium 35.5 24 0.00051 40.2 2.2 43 109-159 1-43 (337)
487 PF14523 Syntaxin_2: Syntaxin- 35.5 3.5E+02 0.0076 24.7 12.2 39 532-570 6-44 (102)
488 PLN00206 DEAD-box ATP-dependen 35.4 26 0.00057 41.9 2.7 24 133-158 152-175 (518)
489 PRK14723 flhF flagellar biosyn 35.3 29 0.00064 43.6 3.2 18 142-159 186-203 (767)
490 KOG0982 Centrosomal protein Nu 35.3 8.5E+02 0.018 29.1 19.5 54 704-767 375-432 (502)
491 cd01428 ADK Adenylate kinase ( 35.1 16 0.00035 36.8 0.8 16 144-159 2-17 (194)
492 KOG3088 Secretory carrier memb 35.1 33 0.00072 38.2 3.1 23 826-848 70-92 (313)
493 KOG3850 Predicted membrane pro 35.1 3.1E+02 0.0067 32.1 10.6 11 353-363 68-78 (455)
494 KOG4552 Vitamin-D-receptor int 35.0 3.1E+02 0.0067 29.5 9.9 72 522-616 47-118 (272)
495 PF13851 GAS: Growth-arrest sp 34.9 5.8E+02 0.013 27.1 15.7 25 638-662 153-177 (201)
496 KOG0483 Transcription factor H 34.8 1.6E+02 0.0035 31.4 8.0 78 570-656 57-147 (198)
497 PF10168 Nup88: Nuclear pore c 34.6 7.7E+02 0.017 31.3 15.1 52 527-584 567-618 (717)
498 TIGR01313 therm_gnt_kin carboh 34.6 15 0.00032 36.4 0.4 15 144-158 1-15 (163)
499 PF08826 DMPK_coil: DMPK coile 34.6 1.6E+02 0.0035 25.7 6.6 33 621-653 25-57 (61)
500 cd01850 CDC_Septin CDC/Septin. 34.4 16 0.00035 40.1 0.7 22 138-159 1-22 (276)
No 1
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-93 Score=797.46 Aligned_cols=472 Identities=36% Similarity=0.530 Sum_probs=401.6
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEE-EecC-CCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCc
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEEIA-WYAD-GETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~~~-~~~d-~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (878)
..++|+|+|||||++..|...|...+ ++.. ..++++...+....|.||+||.|+++|++||..++.|+|++||.||||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 46899999999999999998887744 4444 456666555555899999999999999999999999999999999999
Q ss_pred ceeeecccCCCCcccccCCC--------------------------ceeEEEEEeeeeecceeeecCCCCCCCcceeecC
Q 002808 143 TIFAYGVTSSGKTHTMHTPN--------------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS 196 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~~--------------------------~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~ 196 (878)
||||||||||||||||.|.+ .+|+|.|||||||+|+|+|||+|.+.++.|++|.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 99999999999999998543 3699999999999999999999999999999997
Q ss_pred C-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCC
Q 002808 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (878)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGS 275 (878)
+ ++||+|+++..|.++++++++|+.|..+|+++.|+||.+|||||+||+|+|.+. +......+.|+|+|||||||
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~----n~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQE----NVEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEec----cccchhhccccEEEEEcccc
Confidence 5 599999999999999999999999999999999999999999999999999965 34445688999999999999
Q ss_pred CC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHH
Q 002808 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHN 354 (878)
Q Consensus 276 Er-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLs 354 (878)
|+ +|+++.|..+.|+++||+||.|||+||++|++|+.+|||||||||||||||+|||||||+||+||+|+..+..||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 99 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCcccccccccc
Q 002808 355 TLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLILVSSKASQSPRVPHRPGPRRRHSFGEEE 434 (878)
Q Consensus 355 TLrFAsRak~Ikn~~~~N~~~~~~~~l~~~le~e~~~~~~l~~~iq~L~~~i~~s~~~~~~~~~~~~~~~~~r~~~g~~~ 434 (878)
||+|++|||.|+|.+.+|... ....+.+.++.+++....+.+.++.+...+ .+||+ |+..
T Consensus 321 Tl~fg~rak~ikN~v~~n~e~-~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl-----------------~~~~~--~E~~ 380 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNLEL-TAEEWKRKLEKKKDKNVALKEELEKLRNSL-----------------KRWRN--GEEV 380 (607)
T ss_pred chhhccccccccchhhhhhHh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------hhhcc--cCcc
Confidence 999999999999999999633 334577888888888888888888876654 68888 6555
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCCCCCcccccccccccccccccccCCCCccccccccccCCCCCCCCCCCCCCCCCCC
Q 002808 435 KRDSSLGPLTSTSDKSSGIKSTSTPSTPRAESINFRTESRLSQSLLTETSPSADLLSDARHDRGVPEDSFLGQETPSTSI 514 (878)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 514 (878)
+.+.+... .. . ...+.. ++ +..+..... .........
T Consensus 381 ~~de~~~~-~~-~------~k~~~~-------------------~~-~~~~~i~~~---------------~~~~~~~~~ 417 (607)
T KOG0240|consen 381 KEDEDFSL-KE-E------AKMSAI-------------------LS-EEEMSITKL---------------KGSLEEEED 417 (607)
T ss_pred cchhhhhH-HH-H------HHhhhh-------------------hh-hhhhhhhhc---------------ccchHHHHH
Confidence 54422110 00 0 000000 00 000000000 000112344
Q ss_pred CchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH--------HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 002808 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEE--------AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSI 586 (878)
Q Consensus 515 ~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq--------a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~ 586 (878)
.+...+..||+|+|.+|.+|+.++++...|++| +.+.++++.+|.++.++|.+++.++
T Consensus 418 ~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~-------------- 483 (607)
T KOG0240|consen 418 ILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAK-------------- 483 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 567889999999999999999999999999998 7799999999999999999999984
Q ss_pred hcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhh
Q 002808 587 MTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADN 623 (878)
Q Consensus 587 ~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN 623 (878)
.+++++++|++||+++|++++.+.+.+...|
T Consensus 484 ------~e~~e~~~al~el~~~~~~~~~~~~~~~~~n 514 (607)
T KOG0240|consen 484 ------DEVKEVLTALEELAVNYDQKSEEKESKLSQN 514 (607)
T ss_pred ------HHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh
Confidence 4689999999999999999999999888877
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-82 Score=752.73 Aligned_cols=331 Identities=38% Similarity=0.603 Sum_probs=287.5
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCC-CE-EEeCCC--C--CceeEEeccccCCCCcchhHHHHHHHHHHHHhh
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADG-ET-ILRNED--N--PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAM 137 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~-~~-i~~~~~--~--~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl 137 (878)
....+|+|+|||||++.+|......+++..+| .. |.+... . -.+.|+||+||||.+.|.+||+.++.|+|..|+
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999888877766555 32 333222 2 256899999999999999999999999999999
Q ss_pred cCCCcceeeecccCCCCcccccCC-----------------------------CceeEEEEEeeeeecceeeecCCCCC-
Q 002808 138 DGINGTIFAYGVTSSGKTHTMHTP-----------------------------NREFLLRVSYLEIYNEVVNDLLNPAG- 187 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~g~-----------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~- 187 (878)
.|||||||||||||+||||||+|. +.+|+|+|||+|+|||.|+|||++..
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccc
Confidence 999999999999999999999862 34799999999999999999998764
Q ss_pred --CCcceeecC------CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCC
Q 002808 188 --QNLRIREDS------QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAG 259 (878)
Q Consensus 188 --~~L~Ired~------~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~ 259 (878)
..+.+.+++ +|++|.|+.+++|.++.|++.+|.+|...|.+++|.||.+|||||+||+|+|.-..... .+.
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~-~ge 284 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP-EGE 284 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC-cch
Confidence 345666665 46999999999999999999999999999999999999999999999999996543222 234
Q ss_pred ceeeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCcccee
Q 002808 260 EAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSL 338 (878)
Q Consensus 260 ~~~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~m 338 (878)
+.+++|||+||||||||. ++.|+.+.|.+|++.||+||+|||+||+||.++ ..|||||+|||||||||||||.++|+|
T Consensus 285 elvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGGkTKT~i 363 (1041)
T KOG0243|consen 285 ELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGGKTKTCI 363 (1041)
T ss_pred hhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCCCceeEE
Confidence 668899999999999998 889998889999999999999999999999995 589999999999999999999999999
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002808 339 ICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLIL 407 (878)
Q Consensus 339 Ia~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~~~~~~~~l~~~le~e~~~~~~l~~~iq~L~~~i~ 407 (878)
||||||+..+++|||+||.||.|||+|+|+|.+|...-. ..+.++|-.+|.+|...|.
T Consensus 364 IATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K-----------~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 364 IATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMK-----------KTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999953222 2334556667777776653
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-83 Score=746.20 Aligned_cols=328 Identities=38% Similarity=0.562 Sum_probs=295.2
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCC-EEEeCCC--CCceeEEeccccCCCC-------cchhHHHHHHHHHHHH
Q 002808 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGE-TILRNED--NPSIAYAYDRVFGPTT-------TTRHVYDIAAQHVVSG 135 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~-~i~~~~~--~~~~~F~FD~VF~~~a-------tQeeVY~~~~~plV~~ 135 (878)
..+|+|+||||||+.+|......+++...|. +.+.++. +....|+||++||..+ +|..||+.++.|+|+.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 4579999999999999998877766666554 3344433 2345699999998654 7999999999999999
Q ss_pred hhcCCCcceeeecccCCCCcccccCC--------------------------CceeEEEEEeeeeecceeeecCC-CC-C
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLN-PA-G 187 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~--------------------------~~ef~V~vS~lEIYnE~I~DLL~-p~-~ 187 (878)
+|+|||+||||||||||||||||+|- +..|.|.|||||||||+|+|||+ |. +
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 99999999999999999999999853 34699999999999999999999 43 4
Q ss_pred CCcceeecC-CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeee
Q 002808 188 QNLRIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQ 266 (878)
Q Consensus 188 ~~L~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~Sk 266 (878)
++|+|||+| .|+||++|+.+.|+|+.|+..||+.|++.|++++|+||+.|||||+||+|++.+.......+....++|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 689999999 7999999999999999999999999999999999999999999999999999998776666666788999
Q ss_pred eeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcC------CCCCccCCCCchhhhhhccCCCCccceeE
Q 002808 267 LHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG------RATHIPYRDSKLTRLLQSSLSGHGRVSLI 339 (878)
Q Consensus 267 L~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~------k~~hIPYRdSKLTrLLqdsLGGnskT~mI 339 (878)
|+||||||||| +.+++.|+|+|||.+|||||.+||+||+||++. +..+||||||.|||||+++|||||||+||
T Consensus 243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI 322 (1221)
T KOG0245|consen 243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI 322 (1221)
T ss_pred eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence 99999999999 679999999999999999999999999999862 34599999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Q 002808 340 CTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSAL 395 (878)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~~~~~~~~l~~~le~e~~~~~~l 395 (878)
|+|||+..||+|||+|||||.|||.|+|.|++| +|.+++|+++|++|....+.+
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVN--EdpnaKLIRELreEv~rLksl 376 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVN--EDPNAKLIRELREEVARLKSL 376 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeC--CCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 788999999999886654443
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.4e-83 Score=727.80 Aligned_cols=328 Identities=45% Similarity=0.622 Sum_probs=289.3
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecC--CCEEEeCCC-----CCceeEEeccccCCCCcchhHHHHHHHHHHHHhhc
Q 002808 66 KENVTVTVRFRPLSPREIRQGEEIAWYAD--GETILRNED-----NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD 138 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~~~~~~d--~~~i~~~~~-----~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~ 138 (878)
.++|+|+||+||++..+...+....+..+ ...+.+..+ ...+.|+||.||+++++|++||+.++.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 57899999999999988776655433322 223333221 23567999999999999999999999999999999
Q ss_pred CCCcceeeecccCCCCcccccCCC------------------------ceeEEEEEeeeeecceeeecCCCCC-CCccee
Q 002808 139 GINGTIFAYGVTSSGKTHTMHTPN------------------------REFLLRVSYLEIYNEVVNDLLNPAG-QNLRIR 193 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~g~~------------------------~ef~V~vS~lEIYnE~I~DLL~p~~-~~L~Ir 193 (878)
||||||||||||||||||||+|++ ..|.|+|||+|||||.|+|||++.. +.|.|+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 999999999999999999999872 1399999999999999999999987 589999
Q ss_pred ecC-CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeec
Q 002808 194 EDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDL 272 (878)
Q Consensus 194 ed~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDL 272 (878)
+++ .|+||+|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++.... ..+....+.|+|+||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~-~~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKS-DGGLMSGRSSKLNLVDL 242 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeeccc-CCCccccccceeeeeec
Confidence 999 7899999999999999999999999999999999999999999999999999983221 22445678899999999
Q ss_pred CCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHH
Q 002808 273 AGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEE 351 (878)
Q Consensus 273 AGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eE 351 (878)
||||| .+++++|.|++|+.+||+||++||+||.+|++++..||||||||||+||||||||||+|+|||||+|+..+++|
T Consensus 243 agsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~E 322 (574)
T KOG4280|consen 243 AGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEE 322 (574)
T ss_pred cchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHH
Confidence 99999 78999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002808 352 THNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLI 406 (878)
Q Consensus 352 TLsTLrFAsRak~Ikn~~~~N~~~~~~~~l~~~le~e~~~~~~l~~~iq~L~~~i 406 (878)
|++||+||+|||.|+|+|.+|+.. + +.....|..+|++|++.+
T Consensus 323 TlsTLrfA~Rak~I~nk~~ined~--~----------~~~~~~lq~ei~~Lk~~l 365 (574)
T KOG4280|consen 323 TLSTLRFAQRAKAIKNKPVINEDP--K----------DALLRELQEEIERLKKEL 365 (574)
T ss_pred HHHHHHHHHHHHHhhccccccCCc--c----------hhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999643 3 233445666777777765
No 5
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-81 Score=737.34 Aligned_cols=589 Identities=37% Similarity=0.475 Sum_probs=407.9
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCC-------ceeEEeccccCCCCcchhHHHHHHHHHHHHhhc
Q 002808 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNP-------SIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD 138 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~~-------~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~ 138 (878)
..+|.|+|||||+++++...+....|...++..++..... ...|.||+||+++++|++||+.+++|||++||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4689999999999999777777777766555443332211 278999999999999999999999999999999
Q ss_pred CCCcceeeecccCCCCcccccCC----------------------CceeEEEEEeeeeecceeeecCCCCCCCcceeecC
Q 002808 139 GINGTIFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS 196 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~g~----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~ 196 (878)
|||+||||||||||||||||.|. ++.|.|+|||+|||||.|+|||+|.+++|.|++|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 99999999999999999999854 34699999999999999999999999999999999
Q ss_pred C-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCC
Q 002808 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (878)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGS 275 (878)
. |++|.||+++.|.|+++++.+|..|..+|+++.|.+|..|||||+||+|.|.+...... . ..|+|+|||||||
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----~-~~s~L~lIDLAGS 239 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS----S-RVSKLNLIDLAGS 239 (675)
T ss_pred CCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc----c-hhheehhhhhhhh
Confidence 7 79999999999999999999999999999999999999999999999999998754433 1 7789999999999
Q ss_pred CC-ccccccchhhhhhhhccccHHHHHHHHHHhhcC-CCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHH
Q 002808 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETH 353 (878)
Q Consensus 276 Er-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~-k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETL 353 (878)
|| .++++.|.|++||++||+||++||+||++|+++ ...||||||||||||||++|||||+|+|||||+|+..+|+||+
T Consensus 240 ERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~ 319 (675)
T KOG0242|consen 240 ERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETK 319 (675)
T ss_pred hhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHH
Confidence 99 679999999999999999999999999999998 4568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHH
Q 002808 354 NTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSAL-------------------------------LSRIQRL 402 (878)
Q Consensus 354 sTLrFAsRak~Ikn~~~~N~~~~~~~~l~~~le~e~~~~~~l-------------------------------~~~iq~L 402 (878)
+||+||+|||.|++.+.+|.+......++..-.+...+.+.+ ..+++.+
T Consensus 320 nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 399 (675)
T KOG0242|consen 320 NTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPEREQELLIQKLEKEEVEELLPQRSEIQSL 399 (675)
T ss_pred HHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccchhhHHHHhHhhhhhHhhhhhhhhHHHHH
Confidence 999999999999999999986544332222201111110000 0122222
Q ss_pred HHHHhhhccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcccCCCCCCCcccccccccccccccccccC
Q 002808 403 TKLILVSSKASQSPRVPHRPGPRRRHSFGEEEKRDSSLGPLTSTSDKSSGIKSTSTPSTPRAESINFRTESRLSQSLLTE 482 (878)
Q Consensus 403 ~~~i~~s~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~e 482 (878)
.+.+..+............+...+-...+.....+.. ..+. .......... -......
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~--------~~~~~~~ 457 (675)
T KOG0242|consen 400 VELLKRLSASRRELLSSLLSLRTELRINELDKLLDSL-------------LIST-SKSRLLAQSL--------ILELERS 457 (675)
T ss_pred HHHHhhhccccchhhhcccchhhHHHhhhhhhhhhhh-------------hhhh-hhhhhhhhhh--------hhhhhhh
Confidence 2222222221111000000000000000000000000 0000 0000000000 0000000
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhhhHHHHHhhhH-HHHHHHHHHhcCCchHHHHHHH
Q 002808 483 TSPSADLLSDARHDRGVPEDSFLGQETPSTSIKTIDQIDLLREQQKILAGEVALHSS-ALKRLSEEAARNPQKEQLQVEI 561 (878)
Q Consensus 483 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~d~~dlL~eQlk~~~~Ei~~~ss-~lkrL~eqa~~~~~~e~iq~e~ 561 (878)
.....+.+.. ..-.......+..+.++++..+..+++.+... .+..+.++....|+.+...
T Consensus 458 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 519 (675)
T KOG0242|consen 458 ESSLSDLLRP---------------ALELEDNEKNDKEEELKEQQSIEKEESSLSLSPLERCLLDRSNLLPELERNA--- 519 (675)
T ss_pred hhhhhhhhCc---------------hhhhhccccchhHHHHHHHHHhhcchhcccccchhhhhhhhhcccHHHHhhH---
Confidence 0000111100 00011223344789999999999999999888 5788888888777775432
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHH
Q 002808 562 KKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQ 641 (878)
Q Consensus 562 ~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lq 641 (878)
-+..|+.+++ +++.++..+.+..+.......... ...+.++..+++.+..-++.....+ ..+++-..+......++
T Consensus 520 -~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 595 (675)
T KOG0242|consen 520 -IIEVESEEKS-QLKNVSELSAELKELSRELLSELS-AESLEELVELIDEVIERLISESKEA-ESQEESGLKGITAKRLR 595 (675)
T ss_pred -HHhhhHhHHH-HHhhhhhhhHHHHHHHHhhhcccc-cccchhhhhhcchhhhhhhcccccc-ccccccccccccccccc
Confidence 3455666655 777777777666665554333333 5566788888888655555554444 44444433555666666
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhh
Q 002808 642 ETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQ 721 (878)
Q Consensus 642 eel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~ 721 (878)
.-...+.++++.........+.. ...++..+.+..-..+...
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~- 637 (675)
T KOG0242|consen 596 SCLSSLEEKLSPIQSLQSELSSL-------------------------------------SNKITHRKLEDSDFQEDRN- 637 (675)
T ss_pred cchhhhccCcchhhhhcccCCcc-------------------------------------cccccccccccCccccccc-
Confidence 66666666654322222110000 0233344444555555566
Q ss_pred hhhhhchhhhhhhhhhhhhH
Q 002808 722 LELRNQKLSEESSYAKGLAS 741 (878)
Q Consensus 722 l~~~n~kl~ee~~yak~las 741 (878)
.+..++.+.++.+|++.+.+
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~ 657 (675)
T KOG0242|consen 638 DREGNQGLQEEVSLAKSLSS 657 (675)
T ss_pred cccCCcchhhhhcccccccc
Confidence 88899999999999999988
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.9e-79 Score=728.17 Aligned_cols=309 Identities=39% Similarity=0.640 Sum_probs=278.7
Q ss_pred CCCCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCC
Q 002808 62 NPSSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN 141 (878)
Q Consensus 62 ~~~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN 141 (878)
+....++|+|+|||||++..| .+..+++..++..+.+. ...|.||+||+++++|++||+.++.|+|+.+|+|||
T Consensus 93 n~~~ds~VkV~VRVRPl~~~E--~g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyN 166 (1320)
T PLN03188 93 NGVSDSGVKVIVRMKPLNKGE--EGEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFN 166 (1320)
T ss_pred ccCCCCCeEEEEEcCCCCCcc--CCCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 344578999999999999986 35556666666666664 468999999999999999999999999999999999
Q ss_pred cceeeecccCCCCcccccCCC--------------------------------------ceeEEEEEeeeeecceeeecC
Q 002808 142 GTIFAYGVTSSGKTHTMHTPN--------------------------------------REFLLRVSYLEIYNEVVNDLL 183 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~g~~--------------------------------------~ef~V~vS~lEIYnE~I~DLL 183 (878)
+||||||||||||||||+|+. ..|.|+|||+|||||+|||||
T Consensus 167 aTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLL 246 (1320)
T PLN03188 167 SSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLL 246 (1320)
T ss_pred ceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecc
Confidence 999999999999999999852 247899999999999999999
Q ss_pred CCCCCCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCcee
Q 002808 184 NPAGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (878)
Q Consensus 184 ~p~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 262 (878)
++...+|.|++|+. |+||.||+++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|++.......+....
T Consensus 247 sp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~ 326 (1320)
T PLN03188 247 DPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326 (1320)
T ss_pred ccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcce
Confidence 99988999999985 59999999999999999999999999999999999999999999999999987543333333456
Q ss_pred eeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhc----CCCCCccCCCCchhhhhhccCCCCccce
Q 002808 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD----GRATHIPYRDSKLTRLLQSSLSGHGRVS 337 (878)
Q Consensus 263 ~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~----~k~~hIPYRdSKLTrLLqdsLGGnskT~ 337 (878)
..|+|+||||||||| .++++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||||+|||||+|+
T Consensus 327 r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTv 406 (1320)
T PLN03188 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1320)
T ss_pred EEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEE
Confidence 789999999999999 56889999999999999999999999999985 4557999999999999999999999999
Q ss_pred eEEeeCCCCCChHHHHHHHHHHHHhcccccccccccccc
Q 002808 338 LICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLED 376 (878)
Q Consensus 338 mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~~~~ 376 (878)
|||||||+..+++||++||+||+|||.|+|.|.+|....
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~ 445 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ 445 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh
Confidence 999999999999999999999999999999999997543
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.4e-75 Score=644.93 Aligned_cols=296 Identities=44% Similarity=0.655 Sum_probs=265.0
Q ss_pred CCeEEEEecCCCChhhhccCCeEEE-ecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCccee
Q 002808 67 ENVTVTVRFRPLSPREIRQGEEIAW-YADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIF 145 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~~~~-~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIf 145 (878)
++|+|+|||||+...|...+...++ ..++..++.... +.+.|.||+||+++++|++||+.++.|+|+++|+|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 4699999999999999865555433 334455554433 36789999999999999999999999999999999999999
Q ss_pred eecccCCCCcccccCCC-----------------------------------ceeEEEEEeeeeecceeeecCCCCCCCc
Q 002808 146 AYGVTSSGKTHTMHTPN-----------------------------------REFLLRVSYLEIYNEVVNDLLNPAGQNL 190 (878)
Q Consensus 146 AYGqTGSGKTyTM~g~~-----------------------------------~ef~V~vS~lEIYnE~I~DLL~p~~~~L 190 (878)
|||||||||||||+|+. ..|.|+|||+|||||+|||||++....+
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 99999999999999742 2478999999999999999999988899
Q ss_pred ceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeE
Q 002808 191 RIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (878)
Q Consensus 191 ~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~L 269 (878)
.|++++. |++|.|++++.|.+++|++.+|..|..+|++++|.+|..|||||+||+|.|.+...... ......|+|+|
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~--~~~~~~s~l~~ 237 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS--STNIRTSRLNL 237 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC--CCcEEEEEEEE
Confidence 9999985 69999999999999999999999999999999999999999999999999987543222 22467799999
Q ss_pred eecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhc---CCCCCccCCCCchhhhhhccCCCCccceeEEeeCCC
Q 002808 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD---GRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPS 345 (878)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~---~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs 345 (878)
|||||||| .++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||||+|||||+|+|||||+|+
T Consensus 238 VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~ 317 (337)
T cd01373 238 VDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPS 317 (337)
T ss_pred EECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCC
Confidence 99999999 56778999999999999999999999999975 346899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 002808 346 SSSSEETHNTLKFAHRAKHI 365 (878)
Q Consensus 346 ~~~~eETLsTLrFAsRak~I 365 (878)
..+++||++||+||.|||.|
T Consensus 318 ~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 318 SKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.9e-75 Score=639.73 Aligned_cols=297 Identities=44% Similarity=0.715 Sum_probs=269.7
Q ss_pred CeEEEEecCCCChhhhccCCeEEE-ecCCCEEEeCCCC-------------CceeEEeccccCCCCcchhHHHHHHHHHH
Q 002808 68 NVTVTVRFRPLSPREIRQGEEIAW-YADGETILRNEDN-------------PSIAYAYDRVFGPTTTTRHVYDIAAQHVV 133 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~~~~-~~d~~~i~~~~~~-------------~~~~F~FD~VF~~~atQeeVY~~~~~plV 133 (878)
+|+|+|||||+++.|...+...++ ..++..++..+.. ..+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999877766444 4555665554432 24689999999999999999999999999
Q ss_pred HHhhcCCCcceeeecccCCCCcccccCC-----------------------CceeEEEEEeeeeecceeeecCCCCCCCc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNL 190 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~g~-----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L 190 (878)
+++++|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++...++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 9999999999999999999999999874 34689999999999999999999988899
Q ss_pred ceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeE
Q 002808 191 RIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (878)
Q Consensus 191 ~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~L 269 (878)
.|++|+. |++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....+ .......|+|+|
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~-~~~~~~~s~l~~ 239 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS-INQQVRIGKLSL 239 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCC-CCCcEEEEEEEE
Confidence 9999995 59999999999999999999999999999999999999999999999999998754422 234578899999
Q ss_pred eecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCC--CCCccCCCCchhhhhhccCCCCccceeEEeeCCCC
Q 002808 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR--ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSS 346 (878)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k--~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~ 346 (878)
|||||||| .+++..|.+++|+.+||+||++|++||.+|+.+. ..||||||||||+||+|+|||||+|+|||||||+.
T Consensus 240 VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~ 319 (338)
T cd01370 240 IDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSS 319 (338)
T ss_pred EECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCch
Confidence 99999999 5678899999999999999999999999999876 38999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 002808 347 SSSEETHNTLKFAHRAKHI 365 (878)
Q Consensus 347 ~~~eETLsTLrFAsRak~I 365 (878)
.+++||++||+||+|||+|
T Consensus 320 ~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 320 SHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHhccC
Confidence 9999999999999999987
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-74 Score=659.98 Aligned_cols=321 Identities=41% Similarity=0.620 Sum_probs=292.0
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC---------CCceeEEeccccCCCC-------cchhHHHHHH
Q 002808 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED---------NPSIAYAYDRVFGPTT-------TTRHVYDIAA 129 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~---------~~~~~F~FD~VF~~~a-------tQeeVY~~~~ 129 (878)
..+|+|+|||||++.+|+.....+++..++...+++.+ ++.++|.||++|++.+ .|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 56899999999999999988887777666665544433 4568999999998654 6999999999
Q ss_pred HHHHHHhhcCCCcceeeecccCCCCcccccC------------------------CCceeEEEEEeeeeecceeeecCCC
Q 002808 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMHT------------------------PNREFLLRVSYLEIYNEVVNDLLNP 185 (878)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g------------------------~~~ef~V~vS~lEIYnE~I~DLL~p 185 (878)
..+|+.+|+|||+||||||||||||||||+| +...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999999999999999999999984 3456999999999999999999998
Q ss_pred CC--CCcceeecC-CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCcee
Q 002808 186 AG--QNLRIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (878)
Q Consensus 186 ~~--~~L~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 262 (878)
.. +.|+++++. -|+||.||+...|.|++|+-.+|..|+++|++++|+||..|||||+||.|.|.+.-.+...+....
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 75 679999998 699999999999999999999999999999999999999999999999999999877776666677
Q ss_pred eeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhc-----CCCCCccCCCCchhhhhhccCCCCccc
Q 002808 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD-----GRATHIPYRDSKLTRLLQSSLSGHGRV 336 (878)
Q Consensus 263 ~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~-----~k~~hIPYRdSKLTrLLqdsLGGnskT 336 (878)
+.|+|.||||||||| .++++.|.|++||.+||+||.+||.||++|++ |+..+||||||.|||||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 889999999999999 78999999999999999999999999999987 345799999999999999999999999
Q ss_pred eeEEeeCCCCCChHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHH
Q 002808 337 SLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEE 388 (878)
Q Consensus 337 ~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~~~~~~~~l~~~le~e 388 (878)
+||+||||+..+|+|||+|||||.|||+|+|++.+| +++..+.++++.+|
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvN--edpnarvirElReE 372 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVN--EDPNARVIRELREE 372 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhcccccc--CCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999 56666777777554
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.5e-73 Score=628.98 Aligned_cols=297 Identities=38% Similarity=0.613 Sum_probs=264.4
Q ss_pred CCeEEEEecCCCChhhhccCCeE-EEecCCCEEEeCCCC-------------CceeEEeccccCCCCcchhHHHHHHHHH
Q 002808 67 ENVTVTVRFRPLSPREIRQGEEI-AWYADGETILRNEDN-------------PSIAYAYDRVFGPTTTTRHVYDIAAQHV 132 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~~-~~~~d~~~i~~~~~~-------------~~~~F~FD~VF~~~atQeeVY~~~~~pl 132 (878)
.+|+|+|||||+.+.|...+... +...++.++.++.+. ....|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 37999999999999988655543 334556666554432 3568999999999999999999999999
Q ss_pred HHHhhcCCCcceeeecccCCCCcccccCCCc-----------------eeEEEEEeeeeecceeeecCCCCC------CC
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMHTPNR-----------------EFLLRVSYLEIYNEVVNDLLNPAG------QN 189 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~g~~~-----------------ef~V~vS~lEIYnE~I~DLL~p~~------~~ 189 (878)
|+++++|||+||||||||||||||||+|+.. .|.|+|||+|||||+|+|||++.. .+
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~ 160 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDSPSSTKKRQS 160 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCccccccCCCc
Confidence 9999999999999999999999999998643 288999999999999999998754 36
Q ss_pred cceeecCCC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCC----CCceeee
Q 002808 190 LRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENS----AGEAVNL 264 (878)
Q Consensus 190 L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~----~~~~~~~ 264 (878)
+.|++|+.| ++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+....... .......
T Consensus 161 l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 240 (345)
T cd01368 161 LRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITV 240 (345)
T ss_pred eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEE
Confidence 999999954 89999999999999999999999999999999999999999999999999876543211 2345778
Q ss_pred eeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcC-----CCCCccCCCCchhhhhhccCCCCcccee
Q 002808 265 SQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-----RATHIPYRDSKLTRLLQSSLSGHGRVSL 338 (878)
Q Consensus 265 SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~-----k~~hIPYRdSKLTrLLqdsLGGnskT~m 338 (878)
|+|+||||||||+ .++++.|.+++|+.+||+||++|++||.+|+.. +..||||||||||+||||+|||||+|+|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~ 320 (345)
T cd01368 241 SQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARM 320 (345)
T ss_pred EEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEE
Confidence 9999999999999 567899999999999999999999999999873 4689999999999999999999999999
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHhc
Q 002808 339 ICTVTPSSSSSEETHNTLKFAHRAK 363 (878)
Q Consensus 339 Ia~ISPs~~~~eETLsTLrFAsRak 363 (878)
|+||||+..+++||++||+||.+|+
T Consensus 321 I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 321 IVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred EEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.4e-73 Score=628.47 Aligned_cols=306 Identities=39% Similarity=0.589 Sum_probs=276.8
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC-------CCceeEEeccccCCC-------CcchhHHHHHHHHH
Q 002808 67 ENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED-------NPSIAYAYDRVFGPT-------TTTRHVYDIAAQHV 132 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~-------~~~~~F~FD~VF~~~-------atQeeVY~~~~~pl 132 (878)
++|+|+|||||++..|...+...++..++..+.+..+ .....|.||+||++. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 4799999999999999888887665555555544433 245789999999999 99999999999999
Q ss_pred HHHhhcCCCcceeeecccCCCCcccccCCC------------------------ceeEEEEEeeeeecceeeecCCCCC-
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMHTPN------------------------REFLLRVSYLEIYNEVVNDLLNPAG- 187 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~g~~------------------------~ef~V~vS~lEIYnE~I~DLL~p~~- 187 (878)
|+++++|||+||||||||||||||||+|+. ..|.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999998652 3589999999999999999999874
Q ss_pred --CCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeee
Q 002808 188 --QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (878)
Q Consensus 188 --~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~ 264 (878)
..+.+++++. |++|.|++++.|.|+++++.+|..|.++|++++|.+|..|||||+||+|+|.+..............
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 6899999984 6999999999999999999999999999999999999999999999999999876554334556788
Q ss_pred eeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcC-------CCCCccCCCCchhhhhhccCCCCccc
Q 002808 265 SQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-------RATHIPYRDSKLTRLLQSSLSGHGRV 336 (878)
Q Consensus 265 SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~-------k~~hIPYRdSKLTrLLqdsLGGnskT 336 (878)
|+|+||||||||+ .+.+..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+||+|+||||++|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 9999999999999 567788999999999999999999999999864 35799999999999999999999999
Q ss_pred eeEEeeCCCCCChHHHHHHHHHHHHhcccccccccc
Q 002808 337 SLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQN 372 (878)
Q Consensus 337 ~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N 372 (878)
+||+||+|...+++||++||+||+|+++|+|.|++|
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999886
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.9e-71 Score=613.47 Aligned_cols=305 Identities=40% Similarity=0.627 Sum_probs=273.4
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEe--cCCCEEEeCCCC----CceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCC
Q 002808 67 ENVTVTVRFRPLSPREIRQGEEIAWY--ADGETILRNEDN----PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~~~~~--~d~~~i~~~~~~----~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (878)
.+|+|+|||||+...|...+...++. .++..|...... ....|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999997766554433 333555554432 467899999999999999999999999999999999
Q ss_pred CcceeeecccCCCCcccccCCC--------------------------------ceeEEEEEeeeeecceeeecCCCC--
Q 002808 141 NGTIFAYGVTSSGKTHTMHTPN--------------------------------REFLLRVSYLEIYNEVVNDLLNPA-- 186 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~~--------------------------------~ef~V~vS~lEIYnE~I~DLL~p~-- 186 (878)
|+||||||||||||||||+|+. ..|.|+|||+|||||.|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 161 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESD 161 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccc
Confidence 9999999999999999999752 258899999999999999999987
Q ss_pred -CCCcceeec---CCCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCcee
Q 002808 187 -GQNLRIRED---SQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (878)
Q Consensus 187 -~~~L~Ired---~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 262 (878)
..++.++++ ..|++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|.|.+...... .....
T Consensus 162 ~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~-~~~~~ 240 (352)
T cd01364 162 LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS-GEELV 240 (352)
T ss_pred cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC-CCccE
Confidence 568999999 3579999999999999999999999999999999999999999999999999987653322 23446
Q ss_pred eeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEe
Q 002808 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICT 341 (878)
Q Consensus 263 ~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ 341 (878)
..|+|+||||||+|+ .+.++.|.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+|
T Consensus 241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 789999999999999 5677889999999999999999999999999864 79999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHhccccccccccc
Q 002808 342 VTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (878)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~ 373 (878)
|+|+..+++||++||+||+||++|+|.|.+|.
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999984
No 13
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.7e-71 Score=605.52 Aligned_cols=295 Identities=46% Similarity=0.721 Sum_probs=272.0
Q ss_pred CCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCccee
Q 002808 67 ENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIF 145 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIf 145 (878)
++|+|+|||||++..|...+.. ++...++.++.+.++.....|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 5899999999999999765554 444556667777777777899999999999999999999999999999999999999
Q ss_pred eecccCCCCcccccCCCc--------------------------eeEEEEEeeeeecceeeecCCCCCCCcceeecC-CC
Q 002808 146 AYGVTSSGKTHTMHTPNR--------------------------EFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS-QG 198 (878)
Q Consensus 146 AYGqTGSGKTyTM~g~~~--------------------------ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~-~G 198 (878)
|||+|||||||||+|+.. +|.|+|||+|||+|.|+|||++....+.+++++ .|
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 161 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRG 161 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCC
Confidence 999999999999987644 589999999999999999999988899999998 56
Q ss_pred eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC-
Q 002808 199 TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES- 277 (878)
Q Consensus 199 ~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr- 277 (878)
++|.|++++.|.|+++++.+|..|.++|+++.|.+|..|||||+||+|+|.+.... ......|+|+||||||+|+
T Consensus 162 ~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~----~~~~~~s~l~~VDLAGsE~~ 237 (325)
T cd01369 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE----TGSKKRGKLFLVDLAGSEKV 237 (325)
T ss_pred EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC----CCCEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999875422 2346789999999999999
Q ss_pred ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHH
Q 002808 278 SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLK 357 (878)
Q Consensus 278 ~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLr 357 (878)
.+.+..|.+++|+..||+||++|++||.+|+.++..|||||||+||+||+|+|||||+|+||+||+|+..+++||++||+
T Consensus 238 ~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~ 317 (325)
T cd01369 238 SKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLR 317 (325)
T ss_pred cccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHH
Confidence 56788999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 002808 358 FAHRAKHI 365 (878)
Q Consensus 358 FAsRak~I 365 (878)
||+|||+|
T Consensus 318 ~a~r~~~i 325 (325)
T cd01369 318 FGARAKTI 325 (325)
T ss_pred HHHHhhcC
Confidence 99999987
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=8.7e-71 Score=605.85 Aligned_cols=298 Identities=45% Similarity=0.698 Sum_probs=268.8
Q ss_pred CCeEEEEecCCCChhhhccCCeEEE--ecCCCEEEeCCC-----CCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcC
Q 002808 67 ENVTVTVRFRPLSPREIRQGEEIAW--YADGETILRNED-----NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG 139 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~~~~--~~d~~~i~~~~~-----~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~G 139 (878)
++|+|+|||||+++.|...+...++ .++...+.+..+ ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999877665333 334445554433 245789999999999999999999999999999999
Q ss_pred CCcceeeecccCCCCcccccCCCc-------------------------eeEEEEEeeeeecceeeecCCCCC-CCccee
Q 002808 140 INGTIFAYGVTSSGKTHTMHTPNR-------------------------EFLLRVSYLEIYNEVVNDLLNPAG-QNLRIR 193 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~g~~~-------------------------ef~V~vS~lEIYnE~I~DLL~p~~-~~L~Ir 193 (878)
||+||||||||||||||||+|+.. .|.|+|||+|||||.|+|||.+.. ..+.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999997543 589999999999999999999876 689999
Q ss_pred ecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeec
Q 002808 194 EDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDL 272 (878)
Q Consensus 194 ed~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDL 272 (878)
+++. |++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|++...... ....+..|+|+||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~L~~VDL 239 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED-GENHIRVGKLNLVDL 239 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC-CCCcEEEEEEEEEEC
Confidence 9986 69999999999999999999999999999999999999999999999999998754432 234577899999999
Q ss_pred CCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHH
Q 002808 273 AGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEE 351 (878)
Q Consensus 273 AGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eE 351 (878)
||||+ .+++..|.+++|+..||+||.+|++||.+|+.++..||||||||||+||+|+|||||+|+||+||+|...+++|
T Consensus 240 AGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e 319 (333)
T cd01371 240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE 319 (333)
T ss_pred CCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99999 56778899999999999999999999999999887899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 002808 352 THNTLKFAHRAKHI 365 (878)
Q Consensus 352 TLsTLrFAsRak~I 365 (878)
|++||+||+|||+|
T Consensus 320 Tl~TL~fa~r~r~I 333 (333)
T cd01371 320 TLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999987
No 15
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6e-71 Score=604.72 Aligned_cols=288 Identities=38% Similarity=0.564 Sum_probs=258.1
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEecCC-CEEEeCCCC---------CceeEEeccccCCCCcchhHHHHHHHHHHHHh
Q 002808 67 ENVTVTVRFRPLSPREIRQGEEIAWYADG-ETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~~~~~~d~-~~i~~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (878)
.+|+|+|||||+.+.|...+...++..++ .++.+.++. ....|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999998766554433333 355444221 24689999999999999999999999999999
Q ss_pred hcCCCcceeeecccCCCCcccccCCC---------------------ceeEEEEEeeeeecceeeecCCCCCCCcceeec
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMHTPN---------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED 195 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~---------------------~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired 195 (878)
++|||+||||||||||||||||+|+. ..|.|+|||+|||||.|+|||++ .+.+.|+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~ 159 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLND-RKRLSVLED 159 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccC-ccceeEEEc
Confidence 99999999999999999999999652 25899999999999999999998 568999999
Q ss_pred CCC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCC
Q 002808 196 SQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAG 274 (878)
Q Consensus 196 ~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAG 274 (878)
+.| ++|.|++++.|.+++|++.+|..|..+|+++.|.+|..|||||+||+|.|.+... ....|+|+||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~s~l~~vDLAG 232 (322)
T cd01367 160 GKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------NKLLGKLSFIDLAG 232 (322)
T ss_pred CCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-------CeeEEEEEEeecCC
Confidence 865 8999999999999999999999999999999999999999999999999987542 35679999999999
Q ss_pred CCCcc-c-cccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002808 275 SESSK-A-ETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (878)
Q Consensus 275 SEr~k-t-~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eET 352 (878)
||+.. . ...|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||||+|||||+|+|||||+|+..+++||
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eT 311 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHT 311 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHH
Confidence 99943 3 4578999999999999999999999999865 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 002808 353 HNTLKFAHRAK 363 (878)
Q Consensus 353 LsTLrFAsRak 363 (878)
++||+||+|+|
T Consensus 312 l~tL~fa~r~k 322 (322)
T cd01367 312 LNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHhhC
Confidence 99999999986
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.1e-70 Score=598.39 Aligned_cols=297 Identities=59% Similarity=0.890 Sum_probs=269.1
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeee
Q 002808 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAY 147 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAY 147 (878)
+|+|+|||||+...|......++...++.+++..++.....|.||+||+++++|++||+.++.|+|+++++|||+|||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ay 80 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAY 80 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEee
Confidence 59999999999999884333333344445777777677889999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccCC----------------------CceeEEEEEeeeeecceeeecCCCCCCCcceeecCC-CeEeccc
Q 002808 148 GVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ-GTFVEGV 204 (878)
Q Consensus 148 GqTGSGKTyTM~g~----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~~-G~~V~gL 204 (878)
|||||||||||+|+ +..|.|+|||+|||||.|||||++....+.+++++. |++|.|+
T Consensus 81 G~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl 160 (321)
T cd01374 81 GQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGL 160 (321)
T ss_pred cCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCc
Confidence 99999999999964 346899999999999999999999988999999997 7999999
Q ss_pred EEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCCccccccc
Q 002808 205 KEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSKAETTG 284 (878)
Q Consensus 205 se~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr~kt~~~G 284 (878)
+++.|.++++++.+|..|.++|+++.|.+|..|||||+||+|+|.+...... .......|+|+||||||+|+......|
T Consensus 161 ~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~l~~vDLAGsE~~~~~~~~ 239 (321)
T cd01374 161 TEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-ESGTVRVSTLNLIDLAGSERASQTGAG 239 (321)
T ss_pred eEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC-CCCcEEEEEEEEEECCCCCccccCCCC
Confidence 9999999999999999999999999999999999999999999998754332 335578899999999999995433389
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhcCC-CCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHhc
Q 002808 285 VRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAK 363 (878)
Q Consensus 285 ~rlkE~~~INkSL~aLg~VI~aLs~~k-~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsRak 363 (878)
.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||+|...+++||++||+||+|++
T Consensus 240 ~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~ 319 (321)
T cd01374 240 ERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAK 319 (321)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999975 6899999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 002808 364 HI 365 (878)
Q Consensus 364 ~I 365 (878)
+|
T Consensus 320 ~i 321 (321)
T cd01374 320 KV 321 (321)
T ss_pred cC
Confidence 86
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=6.7e-70 Score=599.79 Aligned_cols=296 Identities=44% Similarity=0.663 Sum_probs=266.8
Q ss_pred CeEEEEecCCCChhhhccCCeEEEe--cCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCccee
Q 002808 68 NVTVTVRFRPLSPREIRQGEEIAWY--ADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIF 145 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~~~~~--~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIf 145 (878)
+|+|+||+||+...|...+...++. ++...++... .+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~---~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT---DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC---CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 6999999999999998766654443 3333444432 5689999999999999999999999999999999999999
Q ss_pred eecccCCCCcccccCCC-----------------------------ceeEEEEEeeeeecceeeecCCCC---CCCccee
Q 002808 146 AYGVTSSGKTHTMHTPN-----------------------------REFLLRVSYLEIYNEVVNDLLNPA---GQNLRIR 193 (878)
Q Consensus 146 AYGqTGSGKTyTM~g~~-----------------------------~ef~V~vS~lEIYnE~I~DLL~p~---~~~L~Ir 193 (878)
|||||||||||||+|+. .+|.|.|||+|||||.|+|||.+. ...+.|+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 99999999999999763 368999999999999999999987 4789999
Q ss_pred ecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCC------CCCceeeeee
Q 002808 194 EDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGEN------SAGEAVNLSQ 266 (878)
Q Consensus 194 ed~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~------~~~~~~~~Sk 266 (878)
+++. |++|.|++++.|.++++++.+|..|..+|.+++|.+|..|||||+||+|.|.+...... ........|+
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~ 238 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK 238 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence 9995 59999999999999999999999999999999999999999999999999998765411 1334578899
Q ss_pred eeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCC--CCccCCCCchhhhhhccCCCCccceeEEeeC
Q 002808 267 LHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA--THIPYRDSKLTRLLQSSLSGHGRVSLICTVT 343 (878)
Q Consensus 267 L~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~--~hIPYRdSKLTrLLqdsLGGnskT~mIa~IS 343 (878)
|+||||||+|+ .+++..|.+++|+..||+||.+|++||.+|+.+.. .|||||+||||+||+|+||||++|+||+||+
T Consensus 239 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vs 318 (341)
T cd01372 239 FHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVS 318 (341)
T ss_pred EEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999999 56788999999999999999999999999998653 7999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcccc
Q 002808 344 PSSSSSEETHNTLKFAHRAKHIE 366 (878)
Q Consensus 344 Ps~~~~eETLsTLrFAsRak~Ik 366 (878)
|...+++||++||+||+|||+|+
T Consensus 319 p~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 319 PADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999986
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=7.6e-70 Score=595.18 Aligned_cols=289 Identities=36% Similarity=0.544 Sum_probs=259.6
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecC-C---CEEEeCCCC---CceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCC
Q 002808 68 NVTVTVRFRPLSPREIRQGEEIAWYAD-G---ETILRNEDN---PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~~~~~~d-~---~~i~~~~~~---~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (878)
+|+|+|||||+.+.|......+....+ + ..+.+.++. ..+.|.||+||+++++|++||+.++.|+|+.+++||
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 80 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQ 80 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 599999999999998544333333322 1 344444332 457899999999999999999999999999999999
Q ss_pred CcceeeecccCCCCcccccCCC---------------------ceeEEEEEeeeeecceeeecCCCCCCCcceeecCCC-
Q 002808 141 NGTIFAYGVTSSGKTHTMHTPN---------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQG- 198 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~~---------------------~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~~G- 198 (878)
|+||||||||||||||||+|+. ..|.|+|||+|||||.|+|||++....+.|++++.|
T Consensus 81 n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 160 (319)
T cd01376 81 NATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGN 160 (319)
T ss_pred ceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCC
Confidence 9999999999999999998642 358999999999999999999998889999999865
Q ss_pred eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC-
Q 002808 199 TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES- 277 (878)
Q Consensus 199 ~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr- 277 (878)
++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+... .....|+|+||||||||+
T Consensus 161 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~~s~l~~VDLAGsE~~ 234 (319)
T cd01376 161 ILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS------NIQLEGKLNLIDLAGSEDN 234 (319)
T ss_pred EEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC------CceEEEEEEEEECCCCCcc
Confidence 8999999999999999999999999999999999999999999999999987632 226789999999999999
Q ss_pred ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHH
Q 002808 278 SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLK 357 (878)
Q Consensus 278 ~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLr 357 (878)
.+++..|.+++|+..||+||++||+||.+|+.+. .|||||||+||+||+|+|||||+|+|||||+|...+++||++||+
T Consensus 235 ~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~ 313 (319)
T cd01376 235 RRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLN 313 (319)
T ss_pred cccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHH
Confidence 5678899999999999999999999999999864 899999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 002808 358 FAHRAK 363 (878)
Q Consensus 358 FAsRak 363 (878)
||+|||
T Consensus 314 fa~r~~ 319 (319)
T cd01376 314 FASRSK 319 (319)
T ss_pred HHHhhC
Confidence 999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.3e-69 Score=592.79 Aligned_cols=290 Identities=41% Similarity=0.632 Sum_probs=259.2
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecCCCEEEeCC-----------CCCceeEEeccccCCCCcchhHHHHHHHHHHHHh
Q 002808 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNE-----------DNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~-----------~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (878)
+|+|+|||||+...+ ...+...+++..+..+. ......|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQ---GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCC---CccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 489999999998844 23355556655543332 223467999999999 999999999999999999
Q ss_pred hcCCCcceeeecccCCCCcccccCCC-------------------------ceeEEEEEeeeeecceeeecCCCCC----
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMHTPN-------------------------REFLLRVSYLEIYNEVVNDLLNPAG---- 187 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~-------------------------~ef~V~vS~lEIYnE~I~DLL~p~~---- 187 (878)
++|||+||||||||||||||||+|+. ..|.|+|||+|||||+|||||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~ 156 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALE 156 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccc
Confidence 99999999999999999999999753 3589999999999999999999874
Q ss_pred --CCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeee
Q 002808 188 --QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (878)
Q Consensus 188 --~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~ 264 (878)
+.+.|++++. |++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..... .......
T Consensus 157 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~--~~~~~~~ 234 (334)
T cd01375 157 SLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA--GSEVVRL 234 (334)
T ss_pred cCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC--CCCceEE
Confidence 5789999974 5999999999999999999999999999999999999999999999999999864332 3345778
Q ss_pred eeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeC
Q 002808 265 SQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVT 343 (878)
Q Consensus 265 SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~IS 343 (878)
|+|+||||||||+ .+++..|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+|||||+
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 9999999999999 567889999999999999999999999999998768999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhc
Q 002808 344 PSSSSSEETHNTLKFAHRAK 363 (878)
Q Consensus 344 Ps~~~~eETLsTLrFAsRak 363 (878)
|...+++||++||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=5.2e-68 Score=582.15 Aligned_cols=296 Identities=41% Similarity=0.613 Sum_probs=268.3
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCC--CEEEeCCC-CCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCc
Q 002808 66 KENVTVTVRFRPLSPREIRQGEEIAWYADG--ETILRNED-NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~--~~i~~~~~-~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (878)
+|+|+|+|||||+...|......++...++ ..+.+... .....|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 478999999999999887444444444444 56666554 667899999999999999999997 59999999999999
Q ss_pred ceeeecccCCCCcccccCC------------------------CceeEEEEEeeeeecceeeecCCCC---CCCcceeec
Q 002808 143 TIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPA---GQNLRIRED 195 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~------------------------~~ef~V~vS~lEIYnE~I~DLL~p~---~~~L~Ired 195 (878)
||||||+|||||||||+|+ +..|.|.|||+|||||+|+|||.+. ...+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 9999999999999999865 3568999999999999999999986 678999999
Q ss_pred CC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCC
Q 002808 196 SQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAG 274 (878)
Q Consensus 196 ~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAG 274 (878)
+. |++|.|++++.|.+++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.... +.....|+|+||||||
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----~~~~~~s~l~~VDLaG 235 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----TGEQTRGKLNLVDLAG 235 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC----CCcEEEEEEEEEECCC
Confidence 94 599999999999999999999999999999999999999999999999999876432 3457889999999999
Q ss_pred CCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHH
Q 002808 275 SES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETH 353 (878)
Q Consensus 275 SEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETL 353 (878)
+|+ .+.+..|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+|||+++|+|||||||...+++||+
T Consensus 236 sE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl 314 (329)
T cd01366 236 SERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETL 314 (329)
T ss_pred CcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHH
Confidence 999 567788999999999999999999999999986 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccc
Q 002808 354 NTLKFAHRAKHIEI 367 (878)
Q Consensus 354 sTLrFAsRak~Ikn 367 (878)
+||+||+|+++|++
T Consensus 315 ~tL~~a~~~~~i~~ 328 (329)
T cd01366 315 CSLRFASRVRSVEL 328 (329)
T ss_pred HHHHHHHHhhcccC
Confidence 99999999999986
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.4e-67 Score=619.70 Aligned_cols=306 Identities=40% Similarity=0.551 Sum_probs=271.8
Q ss_pred CCCCCCCCeEEEEecCCCChhhhccCCeEEE-ecC-CCEEEeCCCCCce----eEEeccccCCCCcchhHHHHHHHHHHH
Q 002808 61 ENPSSKENVTVTVRFRPLSPREIRQGEEIAW-YAD-GETILRNEDNPSI----AYAYDRVFGPTTTTRHVYDIAAQHVVS 134 (878)
Q Consensus 61 ~~~~~~~~IkV~VRVRPl~~~E~~~g~~~~~-~~d-~~~i~~~~~~~~~----~F~FD~VF~~~atQeeVY~~~~~plV~ 134 (878)
.-.+.+|+|+|+|||||+.+.+.......+. ..+ +..++..+..... .|.||+||+|.++|++||.. +.|+|.
T Consensus 308 ~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~ 386 (670)
T KOG0239|consen 308 EILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQ 386 (670)
T ss_pred HHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHH
Confidence 3345689999999999999999875333333 332 2344443333222 49999999999999999995 589999
Q ss_pred HhhcCCCcceeeecccCCCCcccccCC------------------------CceeEEEEEeeeeecceeeecCCCC--CC
Q 002808 135 GAMDGINGTIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPA--GQ 188 (878)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------~~ef~V~vS~lEIYnE~I~DLL~p~--~~ 188 (878)
++|+|||+||||||||||||||||.|| ++.|.+.++|+|||||.|+|||++. ..
T Consensus 387 S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~ 466 (670)
T KOG0239|consen 387 SALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVG 466 (670)
T ss_pred HHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcccccccc
Confidence 999999999999999999999999984 2469999999999999999999887 47
Q ss_pred CcceeecCCC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeee
Q 002808 189 NLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQL 267 (878)
Q Consensus 189 ~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL 267 (878)
.+.|+.+++| .+|.+++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|. +.+...+....+.|
T Consensus 467 k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~----g~~~~t~~~~~g~l 542 (670)
T KOG0239|consen 467 KLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIR----GINELTGIRVTGVL 542 (670)
T ss_pred ceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEe----ccccCcccccccce
Confidence 8999999976 899999999999999999999999999999999999999999999999998 44555667888999
Q ss_pred eEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCC
Q 002808 268 HLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSS 346 (878)
Q Consensus 268 ~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~ 346 (878)
+||||||||| .+++.+|.|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||+++|+|+++|||..
T Consensus 543 ~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~ 621 (670)
T KOG0239|consen 543 NLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAA 621 (670)
T ss_pred eEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccH
Confidence 9999999999 78999999999999999999999999999998 568999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcccccccccc
Q 002808 347 SSSEETHNTLKFAHRAKHIEILAAQN 372 (878)
Q Consensus 347 ~~~eETLsTLrFAsRak~Ikn~~~~N 372 (878)
.++.||+++|+||.|++.+...+..-
T Consensus 622 ~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 622 AALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred HHHhhhhhccchHHHhhceecccccc
Confidence 99999999999999999998877653
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.2e-66 Score=565.96 Aligned_cols=303 Identities=46% Similarity=0.679 Sum_probs=273.7
Q ss_pred CeEEEEecCCCChhhhccCCeEEEec---CCCEEEeCCC---CCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCC
Q 002808 68 NVTVTVRFRPLSPREIRQGEEIAWYA---DGETILRNED---NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN 141 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~~~~~~---d~~~i~~~~~---~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN 141 (878)
+|+|+|||||+...|...+...++.. ++..+.+..+ .....|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 59999999999999887665544432 2335655433 34578999999999999999999999999999999999
Q ss_pred cceeeecccCCCCcccccCC-----------------------CceeEEEEEeeeeecceeeecCCCCCCCcceeecCC-
Q 002808 142 GTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ- 197 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~g~-----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~~- 197 (878)
+||||||+|||||||||+|+ +..|.|+|||+|||+|.|+|||++..+.+.|+++++
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 99999999999999999864 236899999999999999999999999999999987
Q ss_pred CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC
Q 002808 198 GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES 277 (878)
Q Consensus 198 G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr 277 (878)
|+++.|++++.|.|+++++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||||+|+
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~--~~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN--SSSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC--CCCCCEEEEEEEEEECCCCCc
Confidence 599999999999999999999999999999999999999999999999999976322 334567889999999999999
Q ss_pred -ccccccchhhhhhhhccccHHHHHHHHHHhhcC-CCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHH
Q 002808 278 -SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNT 355 (878)
Q Consensus 278 -~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~-k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsT 355 (878)
.+.+..|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||+|...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 556788999999999999999999999999985 567999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccc
Q 002808 356 LKFAHRAKHIEILAAQN 372 (878)
Q Consensus 356 LrFAsRak~Ikn~~~~N 372 (878)
|+||+++++|+|.|++|
T Consensus 319 L~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 319 LRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHhhcccCCCcC
Confidence 99999999999999875
No 23
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-66 Score=579.85 Aligned_cols=294 Identities=36% Similarity=0.537 Sum_probs=263.4
Q ss_pred CCCCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCC---------CceeEEeccccCCCCcchhHHHHHHHHHH
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVV 133 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV 133 (878)
....+|.||||-||++..|....+. ++..+..+.++++.+. ....|.||++||+.++++.||..+++|||
T Consensus 205 v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 205 VNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred CccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 3467899999999999999876654 5556666767666544 34579999999999999999999999999
Q ss_pred HHhhcCCCcceeeecccCCCCcccccCC------------------------------CceeEEEEEeeeeecceeeecC
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMHTP------------------------------NREFLLRVSYLEIYNEVVNDLL 183 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------------~~ef~V~vS~lEIYnE~I~DLL 183 (878)
..+|+|--+|+||||||||||||||.|. ...+.|++||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 9999999999999999999999999532 2258899999999999999999
Q ss_pred CCCCCCcceeecCCC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCcee
Q 002808 184 NPAGQNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (878)
Q Consensus 184 ~p~~~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 262 (878)
++ +..|.+.||.++ +.|.||++..|.+.++++.+|..|+..|+++.|..|.+|||||+||+|.+... +...
T Consensus 365 ~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~-------~~~k 436 (676)
T KOG0246|consen 365 ND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH-------GEFK 436 (676)
T ss_pred cc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC-------Ccce
Confidence 97 567999999987 89999999999999999999999999999999999999999999999999743 2246
Q ss_pred eeeeeeEeecCCCCCc--cccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCC-CccceeE
Q 002808 263 NLSQLHLIDLAGSESS--KAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSG-HGRVSLI 339 (878)
Q Consensus 263 ~~SkL~LVDLAGSEr~--kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGG-nskT~mI 339 (878)
..|++.||||||+||+ .+.+..++..||+.|||||+||..||+||... +.|+|||.||||.+|+|||=| |++||||
T Consensus 437 ~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n-k~H~PFR~SKLTqVLRDSFIGenSrTcMI 515 (676)
T KOG0246|consen 437 LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN-KSHLPFRGSKLTQVLRDSFIGENSRTCMI 515 (676)
T ss_pred eEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC-CCCCCchhhhHHHHHHHhhcCCCCceEEE
Confidence 7899999999999994 35567778899999999999999999999875 489999999999999999988 9999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHhcccc
Q 002808 340 CTVTPSSSSSEETHNTLKFAHRAKHIE 366 (878)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRak~Ik 366 (878)
+||||.....+.||+|||||.|+|...
T Consensus 516 A~ISPg~~ScEhTLNTLRYAdRVKeLs 542 (676)
T KOG0246|consen 516 ATISPGISSCEHTLNTLRYADRVKELS 542 (676)
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHhhc
Confidence 999999999999999999999999764
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=5.5e-65 Score=556.81 Aligned_cols=294 Identities=47% Similarity=0.707 Sum_probs=264.7
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCC-----CceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCc
Q 002808 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDN-----PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~-----~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (878)
+|+|+|||||+...|...+..++...++..+.+.++. ....|.||+||+++++|++||+.++.|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 5999999999998874444444445554666665543 36799999999999999999999999999999999999
Q ss_pred ceeeecccCCCCcccccCC------------------------CceeEEEEEeeeeecceeeecCCCC--CCCcceeecC
Q 002808 143 TIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPA--GQNLRIREDS 196 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~------------------------~~ef~V~vS~lEIYnE~I~DLL~p~--~~~L~Ired~ 196 (878)
||||||+|||||||||+|+ ...|.|.+||+|||+|.|+|||.+. ...+.|++++
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~ 160 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDP 160 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcC
Confidence 9999999999999999974 3458999999999999999999997 8899999999
Q ss_pred C-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCC
Q 002808 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (878)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGS 275 (878)
. |+++.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+....... .....|+|+||||||+
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--~~~~~s~l~~VDLaGs 238 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--RSIKSSKLNLVDLAGS 238 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC--ccEEEEEEEEEECCCC
Confidence 4 699999999999999999999999999999999999999999999999999977543321 1477899999999999
Q ss_pred CC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCC-CCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHH
Q 002808 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETH 353 (878)
Q Consensus 276 Er-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k-~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETL 353 (878)
|+ .+.+..+.+++|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+|||||+|...+++||+
T Consensus 239 e~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl 318 (328)
T cd00106 239 ERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETL 318 (328)
T ss_pred CcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHH
Confidence 99 5567889999999999999999999999999876 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 002808 354 NTLKFAHRAK 363 (878)
Q Consensus 354 sTLrFAsRak 363 (878)
+||+||+|||
T Consensus 319 ~tL~~a~r~~ 328 (328)
T cd00106 319 STLRFASRAK 328 (328)
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.9e-66 Score=567.41 Aligned_cols=292 Identities=46% Similarity=0.680 Sum_probs=256.4
Q ss_pred ecCCCChhhhccCCeEEEecCC----CEEEe---CCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceee
Q 002808 74 RFRPLSPREIRQGEEIAWYADG----ETILR---NEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFA 146 (878)
Q Consensus 74 RVRPl~~~E~~~g~~~~~~~d~----~~i~~---~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfA 146 (878)
||||++..|...+....+.... ..... ........|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 8999999999988876554321 11111 1223457899999999999999999999999999999999999999
Q ss_pred ecccCCCCcccccCC---------------------------CceeEEEEEeeeeecceeeecCCCC----CCCcceeec
Q 002808 147 YGVTSSGKTHTMHTP---------------------------NREFLLRVSYLEIYNEVVNDLLNPA----GQNLRIRED 195 (878)
Q Consensus 147 YGqTGSGKTyTM~g~---------------------------~~ef~V~vS~lEIYnE~I~DLL~p~----~~~L~Ired 195 (878)
||+|||||||||+|+ +..|.|+|||+|||+|.|+|||++. ..++.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999986 1368999999999999999999988 357999999
Q ss_pred CC-C-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecC
Q 002808 196 SQ-G-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLA 273 (878)
Q Consensus 196 ~~-G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLA 273 (878)
+. | ++|.|++++.|.++++++.+|..|.++|+++.|.+|..|||||+||+|+|.+..............|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 97 6 999999999999999999999999999999999999999999999999999876544332224688999999999
Q ss_pred CCCCc-cccc-cchhhhhhhhccccHHHHHHHHHHhhcC-CCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChH
Q 002808 274 GSESS-KAET-TGVRRKEGSYINKSLLTLGTVISKLTDG-RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSE 350 (878)
Q Consensus 274 GSEr~-kt~~-~G~rlkE~~~INkSL~aLg~VI~aLs~~-k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~e 350 (878)
|+|+. +... .+.+++|+..||+||.+|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 99984 4444 4888999999999999999999999997 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 002808 351 ETHNTLKFAHRAKHI 365 (878)
Q Consensus 351 ETLsTLrFAsRak~I 365 (878)
||++||+||.++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-63 Score=564.72 Aligned_cols=305 Identities=37% Similarity=0.594 Sum_probs=265.3
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeC------------CCCCceeEEeccccCCCCcchhHHHHHHHH
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRN------------EDNPSIAYAYDRVFGPTTTTRHVYDIAAQH 131 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~------------~~~~~~~F~FD~VF~~~atQeeVY~~~~~p 131 (878)
...+.|.|+||+||+.+.-...| ++...+..+|+.. .+.-...|.|-+||+|+++|.+||+.++.|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45788999999999986322222 2223333444432 122346799999999999999999999999
Q ss_pred HHHHhhcCCCcceeeecccCCCCcccccC---------------------------------------------------
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMHT--------------------------------------------------- 160 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~g--------------------------------------------------- 160 (878)
+|.+++.|-|+.+|+||.|||||||||+|
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999962
Q ss_pred ------------------------------------CCceeEEEEEeeeeecceeeecCCCCCC-----C-cceeecCCC
Q 002808 161 ------------------------------------PNREFLLRVSYLEIYNEVVNDLLNPAGQ-----N-LRIREDSQG 198 (878)
Q Consensus 161 ------------------------------------~~~ef~V~vS~lEIYnE~I~DLL~p~~~-----~-L~Ired~~G 198 (878)
.+..|.|+|||+|||||.|||||.+... . ..+++|.+|
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~ 265 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNG 265 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCC
Confidence 1224899999999999999999987642 2 667888888
Q ss_pred -eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC
Q 002808 199 -TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES 277 (878)
Q Consensus 199 -~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr 277 (878)
+||.|++++.|.+.+|++.+|..|.++|++++|..|..|||||+||+|.|.+.+... +...+..|.|.|||||||||
T Consensus 266 ~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~--~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 266 NMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ--DSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc--ccCceeEEeeeeeecccchh
Confidence 899999999999999999999999999999999999999999999999999876552 34568899999999999999
Q ss_pred -ccccccchhhhhhhhccccHHHHHHHHHHhhcC----CCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002808 278 -SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG----RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (878)
Q Consensus 278 -~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~----k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eET 352 (878)
.++++.|.|++||++||.||++||+||.+|... ...+|||||||||++++.+|.|.++++||+||+|...+|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 789999999999999999999999999999863 346899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccc
Q 002808 353 HNTLKFAHRAKHIEILAAQN 372 (878)
Q Consensus 353 LsTLrFAsRak~Ikn~~~~N 372 (878)
++.|+||.-|+.|.+...++
T Consensus 424 l~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHhcccccccCccc
Confidence 99999999999987666554
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-60 Score=556.89 Aligned_cols=292 Identities=40% Similarity=0.587 Sum_probs=261.5
Q ss_pred cCCCChhhhccCCeEEEe--cCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCC
Q 002808 75 FRPLSPREIRQGEEIAWY--ADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSS 152 (878)
Q Consensus 75 VRPl~~~E~~~g~~~~~~--~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGS 152 (878)
|||+...|...|...+.. +....|++.. ...|+||+||+...+|.++|+.++.|+++.+|.|||+||+|||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~---~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs 77 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK---DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS 77 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC---CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence 699999999999875443 3334444442 45799999999999999999999999999999999999999999999
Q ss_pred CCcccccCC--------------------------CceeEEEEEeeeeecceeeecCCCCC--CCcceeecCCC-eEecc
Q 002808 153 GKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAG--QNLRIREDSQG-TFVEG 203 (878)
Q Consensus 153 GKTyTM~g~--------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~--~~L~Ired~~G-~~V~g 203 (878)
||||||.+. ...|.|.|||+|||++.|+|||.|.. .++.+++ +.| +.+.|
T Consensus 78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g 156 (913)
T KOG0244|consen 78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG 156 (913)
T ss_pred CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence 999999733 12489999999999999999999654 4678888 555 89999
Q ss_pred cEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC-ccccc
Q 002808 204 VKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAET 282 (878)
Q Consensus 204 Lse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~ 282 (878)
+++..|.+..+.+..|..|.-.|++++|+||..|||||+||+|.+++..... .....+++|+||||||||| .++++
T Consensus 157 lte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~---~~s~~~sKlhlVDLAGSER~kkT~a 233 (913)
T KOG0244|consen 157 LTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS---KRSSFCSKLHLVDLAGSERVKKTKA 233 (913)
T ss_pred ehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh---ccchhhhhhheeecccccccccccc
Confidence 9999999999999999999999999999999999999999999998754322 2235679999999999999 67999
Q ss_pred cchhhhhhhhccccHHHHHHHHHHhhcCC-CCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHH
Q 002808 283 TGVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHR 361 (878)
Q Consensus 283 ~G~rlkE~~~INkSL~aLg~VI~aLs~~k-~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsR 361 (878)
+|.|++||.+||.+|++||+||+||.+.+ ..|||||||||||||||+||||+.|+||+||||+..+..||++||+||.|
T Consensus 234 ~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~R 313 (913)
T KOG0244|consen 234 EGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADR 313 (913)
T ss_pred chhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhH
Confidence 99999999999999999999999998754 46999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccc
Q 002808 362 AKHIEILAAQNK 373 (878)
Q Consensus 362 ak~Ikn~~~~N~ 373 (878)
|+.|+|.|++|.
T Consensus 314 ak~iknk~vvN~ 325 (913)
T KOG0244|consen 314 AKQIKNKPVVNQ 325 (913)
T ss_pred HHHhcccccccc
Confidence 999999999996
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-57 Score=528.54 Aligned_cols=299 Identities=45% Similarity=0.651 Sum_probs=262.1
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcce
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTI 144 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tI 144 (878)
.-..++++++..|-...+ .+....+...+..... ....|.||+||++.++|++||+.+++|+++.++.|||+||
T Consensus 20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE-----RLINTSKKSHVSLEKS-KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred eecCceEEEeecCCCcch-----heeecccccccccccc-cceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE
Confidence 357799999999964432 2222222222222221 1567999999999999999999999999999999999999
Q ss_pred eeecccCCCCcccccCCC-----------------------ceeEEEEEeeeeecceeeecCCCCCCCcceeecCC-CeE
Q 002808 145 FAYGVTSSGKTHTMHTPN-----------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ-GTF 200 (878)
Q Consensus 145 fAYGqTGSGKTyTM~g~~-----------------------~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~~-G~~ 200 (878)
||||||||||||||.|.. ..|.|.|||+|||||+++|||.+....+.++++.. |++
T Consensus 94 fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~ 173 (568)
T COG5059 94 FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVK 173 (568)
T ss_pred EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceE
Confidence 999999999999997542 46999999999999999999999887788999885 699
Q ss_pred ecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC-cc
Q 002808 201 VEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SK 279 (878)
Q Consensus 201 V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr-~k 279 (878)
|.|+++..|.+.++++.+|..|..+|.++.|.+|..|||||+||++.+.+.....+ ....++|+||||||||+ ..
T Consensus 174 v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~----~~~~~~l~lvDLagSE~~~~ 249 (568)
T COG5059 174 VAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG----TSETSKLSLVDLAGSERAAR 249 (568)
T ss_pred eecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc----ceecceEEEEeeccccccch
Confidence 99999999999999999999999999999999999999999999999987643322 23337999999999999 55
Q ss_pred ccccchhhhhhhhccccHHHHHHHHHHhhc-CCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHH
Q 002808 280 AETTGVRRKEGSYINKSLLTLGTVISKLTD-GRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKF 358 (878)
Q Consensus 280 t~~~G~rlkE~~~INkSL~aLg~VI~aLs~-~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrF 358 (878)
++..+.|++||..||+||++||+||.+|.+ ++..|||||+|||||+||++|||+|+|+|||||+|...++++|.+||+|
T Consensus 250 ~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~ 329 (568)
T COG5059 250 TGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKF 329 (568)
T ss_pred hhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHH
Confidence 678999999999999999999999999987 4457999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccc
Q 002808 359 AHRAKHIEILAAQNK 373 (878)
Q Consensus 359 AsRak~Ikn~~~~N~ 373 (878)
|.||+.|++.+..|.
T Consensus 330 a~rak~I~~~~~~~~ 344 (568)
T COG5059 330 ASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHhhcCCcccccC
Confidence 999999999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.2e-46 Score=382.63 Aligned_cols=178 Identities=39% Similarity=0.600 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhhcCCCcceeeecccCCCCcccccCCCceeEEEEEeeeeecceeeecCCCCCCCcceeecCCCeEecc
Q 002808 124 VYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQGTFVEG 203 (878)
Q Consensus 124 VY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~~G~~V~g 203 (878)
||+.++ |+|+.+++|||+||||||||||||||||+|+... .|+.
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~--------------------------------~Gii--- 51 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG--------------------------------AGII--- 51 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCC--------------------------------CCcc---
Confidence 999999 9999999999999999999999999999998511 1211
Q ss_pred cEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC-ccccc
Q 002808 204 VKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAET 282 (878)
Q Consensus 204 Lse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~ 282 (878)
-...++++.+|..|.++|.++.|.+|..|||||+||+|+|.+...... .......|+|+||||||||+ .+.+.
T Consensus 52 -----p~~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-~~~~~~~s~l~lVDLAGsE~~~~~~~ 125 (186)
T cd01363 52 -----PRTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-ATEQPKVGKINLVDLAGSERIDFSGA 125 (186)
T ss_pred -----hHHHHHHHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC-CccceeeeeEEEEEccccccccccCC
Confidence 012334999999999999999999999999999999999987654332 23456789999999999999 56778
Q ss_pred cchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCC
Q 002808 283 TGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTP 344 (878)
Q Consensus 283 ~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISP 344 (878)
.+.+++|++.||+||.+|++||.+|+++ ..||||||||||+||||+|||||+|+||+||||
T Consensus 126 ~~~~~~e~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 126 EGSRLTETANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred chhhHHHHHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 8999999999999999999999999985 479999999999999999999999999999999
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.96 E-value=0.0071 Score=71.32 Aligned_cols=278 Identities=22% Similarity=0.300 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhccc----C
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEE-AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH----N 591 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq-a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~----~ 591 (878)
..+...|.++++.+..++.......+.|.++ -......+.+..|...|..++.+....|..||..|........ .
T Consensus 163 e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~ 242 (546)
T PF07888_consen 163 EEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKE 242 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666555555555544 1122234556777777777777777888888877753322211 0
Q ss_pred cccchhh-----------hHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 002808 592 TMDNSEV-----------SQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNF 660 (878)
Q Consensus 592 k~~~~ev-----------~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~ 660 (878)
+...+++ .+-|.+..++++++..+...+-+++..|.+||......+..-+.++..|+..|+++...++-
T Consensus 243 ~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDr 322 (546)
T PF07888_consen 243 LDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDR 322 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11223333444444434444446666666766666666666666666777666665443311
Q ss_pred CCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhh
Q 002808 661 SPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLA 740 (878)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~la 740 (878)
+ .. + +...--|.+.|+.. |.+....|....-+++.|..=.+.-|
T Consensus 323 ----t-----------~a----------------e--Lh~aRLe~aql~~q---Lad~~l~lke~~~q~~qEk~~l~~~~ 366 (546)
T PF07888_consen 323 ----T-----------MA----------------E--LHQARLEAAQLKLQ---LADASLELKEGRSQWAQEKQALQHSA 366 (546)
T ss_pred ----H-----------HH----------------H--HHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 01112234444432 22222233333333333333112111
Q ss_pred HHHHHHHHhhHHHHHHH-------hhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHH
Q 002808 741 SAAAVELKALSEEVAKL-------MNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSRE 813 (878)
Q Consensus 741 saaavelk~l~~evtkl-------~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 813 (878)
-+-=.++-.|+-|+-.+ -.++.+|..+|...++. +|+ -+.|.++||..
T Consensus 367 e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~--n~v--------------------qlsE~~rel~E--- 421 (546)
T PF07888_consen 367 EADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDC--NRV--------------------QLSENRRELQE--- 421 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHH--------------------HHHHHHHHHHH---
Confidence 11223444555555322 23788999998644421 111 34577888774
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHH
Q 002808 814 REVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWV 855 (878)
Q Consensus 814 re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~ 855 (878)
-.++|..+=+||+|+-+|-|--.+...+=|+-|+------|-
T Consensus 422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~ 463 (546)
T PF07888_consen 422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWK 463 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 567888888999999999888888888878777765444453
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.65 E-value=8.1e-07 Score=105.60 Aligned_cols=231 Identities=23% Similarity=0.245 Sum_probs=134.5
Q ss_pred CCCCCeEEEEecCCCChhhhccCCe--EEE--ecCCCEEEeC----CCCCceeEEeccccCCCCcchhHHHHHHHHHHHH
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEE--IAW--YADGETILRN----EDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~--~~~--~~d~~~i~~~----~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (878)
++..+++|+|+|+|........-.. ++- ..-..++..+ .+.+...|.||.+|.+...+..++.. ...+++.
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~ 380 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFRE-QSQLSQS 380 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHH-HHhhhhh
Confidence 3445999999999987542110000 000 0001111111 12233579999999999988888874 4566777
Q ss_pred hhcCCCcceeeecccCCCCcccccCCCc----------------------eeEEEEEeeeeecceeeecCCCCC-CCc-c
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMHTPNR----------------------EFLLRVSYLEIYNEVVNDLLNPAG-QNL-R 191 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~~~----------------------ef~V~vS~lEIYnE~I~DLL~p~~-~~L-~ 191 (878)
.+.| +++||++++|+++||..... .+...+-+.+||-....++..... .+. .
T Consensus 381 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 456 (568)
T COG5059 381 SLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTK 456 (568)
T ss_pred hhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 7777 99999999999999963221 122333344444111112221110 000 0
Q ss_pred eeecC--CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeE
Q 002808 192 IREDS--QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (878)
Q Consensus 192 Ired~--~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~L 269 (878)
+.... .+.-+..+ ........+...+. .....+..+.+..|.+++++|.+|+...... ....... . ++.
T Consensus 457 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~~~~~~~--~-~n~ 527 (568)
T COG5059 457 IHKLNKLRHDLSSLL-SSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGS----NSSTKEL--S-LNQ 527 (568)
T ss_pred HHHHHHHHHHHHHhh-hhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccch----hhhhHHH--H-hhh
Confidence 00000 00000001 11111111222222 4577889999999999999999998776421 1111111 1 799
Q ss_pred eecCCCCCccccccchhhhhhhhccccHHHHHHHHHHhh
Q 002808 270 IDLAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLT 308 (878)
Q Consensus 270 VDLAGSEr~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs 308 (878)
|||||+|+.-...-|.++++...+|++|..+|.+|.++.
T Consensus 528 ~~~~~~e~~~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 528 VDLAGSERKVSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhccccccchhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 999999987556789999999999999999999998763
No 32
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.60 E-value=0.054 Score=69.27 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.3
Q ss_pred eeecccCCCCccccc
Q 002808 145 FAYGVTSSGKTHTMH 159 (878)
Q Consensus 145 fAYGqTGSGKTyTM~ 159 (878)
+-+|++|||||..|.
T Consensus 27 ~i~G~NGsGKS~ild 41 (1164)
T TIGR02169 27 VISGPNGSGKSNIGD 41 (1164)
T ss_pred EEECCCCCCHHHHHH
Confidence 348999999998773
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.53 E-value=0.13 Score=65.85 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHH
Q 002808 805 KRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 860 (878)
Q Consensus 805 ~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvakl 860 (878)
+.++..-.++-..++..+.+....-..++..+++.+.+-..|+++++.++.....+
T Consensus 447 ~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~ 502 (1164)
T TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344445555555556666667777777777777777777665443
No 34
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.50 E-value=0.071 Score=67.98 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=12.3
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
+.+-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4456788888888877
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.41 E-value=0.13 Score=65.59 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=9.6
Q ss_pred HHhhHHHHHHHhhhhhhHHHHHH
Q 002808 747 LKALSEEVAKLMNHKERLTAELA 769 (878)
Q Consensus 747 lk~l~~evtkl~~~n~~l~~el~ 769 (878)
+..|.+++..+..+-..+..++.
T Consensus 868 ~~~l~~~~~~~~~~~~~l~~~~~ 890 (1179)
T TIGR02168 868 IEELESELEALLNERASLEEALA 890 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 36
>PRK11637 AmiB activator; Provisional
Probab=97.37 E-value=0.021 Score=66.10 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICE 636 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e 636 (878)
++.+++.++.+|+..+.+|..+++++ .++.+.+..+..+++.-..++....++...++.++..+..+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~-------------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQR-------------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444 23333444444444444455555666666777777777777
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 002808 637 CEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 637 ~~~lqeel~~Lk~ql~~~~ 655 (878)
+..++.++..++.+|...+
T Consensus 112 I~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777775544
No 37
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.23 E-value=0.2 Score=66.16 Aligned_cols=305 Identities=18% Similarity=0.169 Sum_probs=177.9
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhh
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEV 598 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev 598 (878)
.+..-...+...++++..-..-++.|.+|+....++-.+..++.++..++.....++..|+.++ .+.
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~L-------------ee~ 367 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERL-------------EEQ 367 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence 3444444455555555555566777777766666665555555555666666666666666555 344
Q ss_pred hHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhcccccc
Q 002808 599 SQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNG 678 (878)
Q Consensus 599 ~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (878)
.+.+.++..++++...+++....+...|+++++.....+..+|.++..|++.+..+-.++.+. +.++.+
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~----------~~~~~S- 436 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC----------GLPDLT- 436 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCC-
Confidence 444555555556555666666667777777888777888888888888888776655544221 111111
Q ss_pred ccchhhhhhhhhhchhhH--HHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhh-hhhhhhhhHHHH-------HHHH
Q 002808 679 EHQIDKEIALLKDINEDS--RLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEE-SSYAKGLASAAA-------VELK 748 (878)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~--~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee-~~yak~lasaaa-------velk 748 (878)
.....+..+.+ .+.....++.+|+++...+....++++.....+.-+ ..-.-.=|.-+| -+++
T Consensus 437 -------dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~ 509 (1486)
T PRK04863 437 -------ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQR 509 (1486)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHH
Confidence 11122222333 344457788888888888888888888776655433 222333333334 4556
Q ss_pred hhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCC-CCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002808 749 ALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQ-DGSSLDLKRELALSREREVSYEAALLEKDQ 827 (878)
Q Consensus 749 ~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~re~~~e~~l~ek~~ 827 (878)
.|++-+--|-.+=..|...|...+... | ......+|... ..+.+++........++--.|+..+.+-..
T Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~q~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1486)
T PRK04863 510 HLAEQLQQLRMRLSELEQRLRQQQRAE--R--------LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARE 579 (1486)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH--H--------HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666666666555443221 0 00111122222 224556655555444444577788888888
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhhhhHHHH----HHHHhhcCC
Q 002808 828 QEAELQRKVEESKKREAYLENELANMWVL----VAKLKKSHG 865 (878)
Q Consensus 828 ~e~el~~~~~e~k~~e~~len~lanmw~l----vaklkk~~~ 865 (878)
+-.+++.+.++-+++=..|+. +|--|.= +.+|.-.-|
T Consensus 580 ~~~~~r~~~~qL~~~i~~l~~-~ap~W~~a~~al~~L~eq~g 620 (1486)
T PRK04863 580 RRMALRQQLEQLQARIQRLAA-RAPAWLAAQDALARLREQSG 620 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hChHHHhhHHHHHHHHHhcc
Confidence 888888888888888887776 4555752 455543334
No 38
>PRK02224 chromosome segregation protein; Provisional
Probab=97.21 E-value=0.44 Score=59.95 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICE 636 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e 636 (878)
++.++..+++++.+.+.+|..+++++... ..-+..+.+....|..+..+++.-..+.+.++++++.....
T Consensus 204 l~~~l~~~~~~l~el~~~i~~~~~~~~~l----------~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~ 273 (880)
T PRK02224 204 LHERLNGLESELAELDEEIERYEEQREQA----------RETRDEADEVLEEHEERREELETLEAEIEDLRETIAETERE 273 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655321 11111112222333333344444445555666666665555
Q ss_pred HHhHHHHHHHHHHHHHH
Q 002808 637 CEGLQETIGFLKQQLND 653 (878)
Q Consensus 637 ~~~lqeel~~Lk~ql~~ 653 (878)
..+++.++..+++++..
T Consensus 274 ~~~l~~~i~~~~~~~~~ 290 (880)
T PRK02224 274 REELAEEVRDLRERLEE 290 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555444
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.00 E-value=0.39 Score=62.57 Aligned_cols=130 Identities=20% Similarity=0.296 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhhhhhcccCcc
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDE-----IKGKNDQIALLEKQIADSIMTSHNTM 593 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~E-----i~~k~~qi~~Le~~i~~s~~~~~~k~ 593 (878)
.++...+-++.+.+-+..--.-|++|..|+..--.|-.++.++..++.. +...+.|+..++..+.. ...
T Consensus 180 ~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~------~~~ 253 (1163)
T COG1196 180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR------LEE 253 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 3444444444444444444455777777777666666666666665543 33444444444444421 112
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
+..++.+.+.+....+.+...+++...++...+++.+........++..++.++++++...
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 314 (1163)
T COG1196 254 ELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEEL 314 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444444444444444444444444445555555556666666666666666553
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=96.92 E-value=0.76 Score=57.70 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccch
Q 002808 518 DQIDLLREQQKILAGEVALHSSALKRLSEEA-ARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS 596 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa-~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ 596 (878)
|..+.+|+.++....+.......++.+..+. ........++.++..+..+++..+.++..|+..+. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~----------~~~ 227 (880)
T PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE----------KLE 227 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 4445555555555444444433344333221 11112233444444555555555555555544442 233
Q ss_pred hhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 597 EVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 597 ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
..++.|.++...++....+++....+...+.+++.....++.+++.++..|++.+
T Consensus 228 ~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 228 KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444444444444444444444444444444443
No 41
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.92 E-value=0.83 Score=60.30 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=47.4
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHH
Q 002808 564 LRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQET 643 (878)
Q Consensus 564 l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqee 643 (878)
+..++...+.||..|+.....++. + ..+.+|-........+++...+++..++++...+..++..||..
T Consensus 797 ~~~ei~~l~~qie~l~~~l~~~~~---------~--~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~k 865 (1311)
T TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDL---------D--RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc---------c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555532221 1 24456666666666667777777777777777777777777666
Q ss_pred HHHHHHHHHH
Q 002808 644 IGFLKQQLND 653 (878)
Q Consensus 644 l~~Lk~ql~~ 653 (878)
+..++.....
T Consensus 866 i~el~~~klk 875 (1311)
T TIGR00606 866 TNELKSEKLQ 875 (1311)
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 42
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.80 E-value=0.33 Score=58.00 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhhhHHHHHhh---hHHHHHHHHH--------------Hh---cCCchHHHHHHHHHHHHHHhhhhHHHH
Q 002808 517 IDQIDLLREQQKILAGEVALH---SSALKRLSEE--------------AA---RNPQKEQLQVEIKKLRDEIKGKNDQIA 576 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~---ss~lkrL~eq--------------a~---~~~~~e~iq~e~~~l~~Ei~~k~~qi~ 576 (878)
+.|...|.++|-...+|++.- -..+.+|.+- ++ ..+-..+....+.-|+++...-++|+.
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~ 199 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE 199 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777666666543 2233333332 11 011111233456677888888888888
Q ss_pred HHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 577 LLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 577 ~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
.||+.|...+.+ ..+..--+.++-.+|++ |+=.|+++.-.+-.+|..-...+..+|.++..|++||..+-
T Consensus 200 ~le~ki~~lq~a------~~~t~~el~~~~s~~de---e~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 200 ELEKKISSLQSA------IEDTQNELFDLKSKYDE---EVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHH------HHhhhhHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888432222 12333334555566664 46688899999999999999999999999999999987643
No 43
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.77 E-value=0.92 Score=59.20 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 002808 802 LDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENEL 850 (878)
Q Consensus 802 ~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~l 850 (878)
.+++.++......-..++..|........+|.+.+++...+=..++.+.
T Consensus 859 ~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 907 (1163)
T COG1196 859 EELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666666666666666666555555555443
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=96.42 E-value=2 Score=54.18 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.0
Q ss_pred eeeecccCCCCcccc
Q 002808 144 IFAYGVTSSGKTHTM 158 (878)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (878)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 344899999998775
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.39 E-value=1.1 Score=60.25 Aligned_cols=147 Identities=21% Similarity=0.267 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCccccccc
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTS 781 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~ 781 (878)
+.|+..|..++..+.-.+..++..-.++-..-+=+..-.+..--=+..|+...++|+++|..|...|.-+-.....-
T Consensus 1216 q~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~--- 1292 (1930)
T KOG0161|consen 1216 QREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSAL--- 1292 (1930)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHH---
Confidence 34555555555555555555554443222111111111111111112234456677777777776655433211000
Q ss_pred ccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHH
Q 002808 782 AVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 860 (878)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvakl 860 (878)
.-...... ..++++|++|..-..+..+|+.+|..-++==..|+.++||.----+.|+..|.---+-++.-
T Consensus 1293 ---~r~~~~~~------~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~ 1362 (1930)
T KOG0161|consen 1293 ---SRDKQALE------SQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQW 1362 (1930)
T ss_pred ---HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011 14678899999888888999999887777777788888887666666666665444444433
No 46
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.36 E-value=1.1 Score=54.61 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=59.0
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCccccc---ccccCCCCChHHHHHHHHHHHHHHHHH
Q 002808 742 AAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQ---IKRQNQDGSSLDLKRELALSREREVSY 818 (878)
Q Consensus 742 aaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~~~~~~re~~~ 818 (878)
-+--||+..-+....+.-||.-|.+.|.....+.. | -++-.++. ..|..+ .+-.++..+..-.+.+
T Consensus 283 ~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~e----g--~~~~~~~~~ee~~~~~~-----~ipEd~es~E~m~~f~ 351 (617)
T PF15070_consen 283 MAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGE----G--DGLESESEEEEAPQPMP-----SIPEDLESREAMVEFF 351 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCC----C--cccccccccccccCcCc-----ccccccccHHHHHHHH
Confidence 34467888889999999999999999986554321 1 11111111 111111 1122222222223445
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHH
Q 002808 819 EAALLEKDQQEAELQRKVEESKKREAYLENELANMW 854 (878)
Q Consensus 819 e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw 854 (878)
..|+..-+.-.++|.+.+++-|.+-..|-..+|.-|
T Consensus 352 ~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q 387 (617)
T PF15070_consen 352 NSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQ 387 (617)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 556655555567888888888877777766666555
No 47
>PRK11637 AmiB activator; Provisional
Probab=96.34 E-value=0.5 Score=54.85 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH--------HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEE--------AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 515 ~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq--------a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
...++++.+.+|++.+..+|..-.+-++.+..+ ......-..++.+|..++.+|...+.+|..++.+|
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888887777554444444433 11222233344444455555555555555444444
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.27 E-value=0.9 Score=54.05 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~ 587 (878)
..+++.+..++..+.+++......++++.++.. .+-..++.++..+..+.+..+.||..|+..|.+...
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888888888888888877777778877654 334568889999999999999999999999977653
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.24 E-value=3.2 Score=54.53 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
..+++.+...+..+.+..+.++.+-++...+-.=++.-.+-+.+++++.-..+..|.++-..|..++..++
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555555556666666667777777777666666666666655554
No 50
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.07 E-value=0.32 Score=54.07 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCccc
Q 002808 698 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQ 777 (878)
Q Consensus 698 ~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~ 777 (878)
++.-+.|+..|+.+.++|..+...+|.+-|.|..+ -+|+|+ .|-..+..|++|+++-+..|.+.-.|+.....--.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d--cv~QL~-~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv- 244 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD--CVKQLS-EANQQIASLSEELARKTEENRRQQEEITSLLSQIV- 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH--HHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34457799999999999999999999999999998 489995 56789999999999999999999888876653210
Q ss_pred ccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 002808 778 RRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEES 839 (878)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~ 839 (878)
+--.|=+.-+...++|+.-|.+.++....|-+=|.+=..+=+|...-+-|+
T Consensus 245 -----------dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 245 -----------DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred -----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011122235778888899888888888777766666666655555554
No 51
>PRK03918 chromosome segregation protein; Provisional
Probab=96.05 E-value=6.6 Score=49.51 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEE 547 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq 547 (878)
..++..+.+|+..+..++......++.|.+.
T Consensus 206 ~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~ 236 (880)
T PRK03918 206 LREINEISSELPELREELEKLEKEVKELEEL 236 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776665555555444
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.04 E-value=0.18 Score=62.03 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH---------------HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEE---------------AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEK 580 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq---------------a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~ 580 (878)
..|.+..|..-++.|..|+...-+.=..|..| ...+.++|++|..+..|..--+.=|..|..||+
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk 495 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK 495 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888876554443334433 224556777777777777777777788899999
Q ss_pred HHhhhhhccc---------CcccchhhhHH----------HHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHH
Q 002808 581 QIADSIMTSH---------NTMDNSEVSQS----------FAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQ 641 (878)
Q Consensus 581 ~i~~s~~~~~---------~k~~~~ev~qa----------l~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lq 641 (878)
|+.+....-. -|.-..|--.| ..|-+.+|-++-.+|| .|.+.|.-+|..|...|..|+
T Consensus 496 rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE---~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 496 RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLE---SELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9977655211 00000110000 1255666777777777 577778888888888888888
Q ss_pred HHHHHHHHH
Q 002808 642 ETIGFLKQQ 650 (878)
Q Consensus 642 eel~~Lk~q 650 (878)
.+++.|+..
T Consensus 573 ~~~~~lr~~ 581 (697)
T PF09726_consen 573 SELQELRKY 581 (697)
T ss_pred HHHHHHHHH
Confidence 877666554
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=2.4 Score=52.18 Aligned_cols=272 Identities=22% Similarity=0.254 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccch
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS 596 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ 596 (878)
.+.+..++.-.+.+|.+|...-|..++|.-+ +++++.+++....+...-++|...|+-++- ..+...-+..
T Consensus 656 ~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e------~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg---~~~~~~~~~~ 726 (970)
T KOG0946|consen 656 DDIQQKYKGLIRELDYQIENLKQMEKELQVE------NEELEEEVQDFISEHSQLKDQLDLLKNQLG---IISSKQRDLL 726 (970)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHH
Confidence 4445556666667777887777777777544 566777777777777777788888877762 1222111222
Q ss_pred hhhHHH----HHHHHHhhhhhhhhHHHH--hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhh
Q 002808 597 EVSQSF----AELAAQLNEKSFELEVKA--ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRF 670 (878)
Q Consensus 597 ev~qal----~eL~~q~~eKs~elE~ks--adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~ 670 (878)
+..++. +||... .+|.|. .++.-++.+|++|..-..+++.+... .-+... ...
T Consensus 727 q~~e~~~t~~eel~a~------~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~------a~~~~~---~~~------ 785 (970)
T KOG0946|consen 727 QGAEASKTQNEELNAA------LSENKKLENDQELLTKELNKKNADIESFKATQRS------AELSQG---SLN------ 785 (970)
T ss_pred hHHHhccCChHHHHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh------hhcccc---hhh------
Confidence 222221 222221 223332 46667777777776655555443220 000000 000
Q ss_pred hhccccccccchhhhhhh--hhhchhh-HHHHHHHHHHHHHHHH-------hHHHhHhhhhhhhhhchhhhhhhhhhhhh
Q 002808 671 AEAKSLNGEHQIDKEIAL--LKDINED-SRLQVQAAEIEELNRK-------VTELTEAKEQLELRNQKLSEESSYAKGLA 740 (878)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~q~~e~e~lk~~-------~~~l~e~~~~l~~~n~kl~ee~~yak~la 740 (878)
....++++.. ..+..++ ...+.++.|+..+|+. -....+..+.+...+--|+.|.+.+++=-
T Consensus 786 --------~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~l 857 (970)
T KOG0946|consen 786 --------DNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKL 857 (970)
T ss_pred --------hhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHH
Confidence 0000111110 0011111 1334455555555544 44455667788888999999999998866
Q ss_pred HHHHHHHHh-------hHHHHHHHh--hhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHH
Q 002808 741 SAAAVELKA-------LSEEVAKLM--NHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALS 811 (878)
Q Consensus 741 saaavelk~-------l~~evtkl~--~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 811 (878)
|+.--++|- |.|+++-|- ..|+-|++++...++..-+-+. .+. ..-.+++..++..-
T Consensus 858 s~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki----------~s~----kqeqee~~v~~~~~ 923 (970)
T KOG0946|consen 858 SNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKI----------VSN----KQEQEELLVLLADQ 923 (970)
T ss_pred HHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcc----------cch----hhhHHHHHHHHhhH
Confidence 666544443 344444332 3366777777766653211110 000 00234566666655
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 002808 812 REREVSYEAALLEKDQQEAELQRKVEESK 840 (878)
Q Consensus 812 ~~re~~~e~~l~ek~~~e~el~~~~~e~k 840 (878)
++.=.||--+|..-.|.-+|...+.+..+
T Consensus 924 ~~~i~alk~~l~dL~q~~eeie~e~~s~~ 952 (970)
T KOG0946|consen 924 KEKIQALKEALEDLNQPVEEIEDEKVSII 952 (970)
T ss_pred HHHHHHHHHHHHHhCCChhhHHhhhhccc
Confidence 55555555555554444444444444333
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.91 E-value=4.9 Score=48.19 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=35.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 002808 619 KAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRN 659 (878)
Q Consensus 619 ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~ 659 (878)
.-++....++|...-..++.....+|..+++++..+++.++
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~ 154 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKN 154 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999999999988764
No 55
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.78 E-value=5.9 Score=52.60 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 619 KAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 619 ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.-.....|+++|.+...++.++..++..++++|..
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~ 913 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33455666667777777777776666666666644
No 56
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.76 E-value=0.77 Score=51.19 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh---------------cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAA---------------RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQ 581 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~---------------~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~ 581 (878)
.+++.-|+-+|.++++-+-+-++.-.--...+. ..+..+.+|..++.|++||..-+.....|-.-
T Consensus 110 ~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 110 LEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 567888888888888777776654432211122 23446789999999999998876655444322
Q ss_pred HhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 582 IADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 582 i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
-. .-+-+ -.|-+.+-+.|+. .-+.....|+++|..|..+|...|++|.+|..|+.+
T Consensus 190 t~--------~~Eek-EqqLv~dcv~QL~-------~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 190 TD--------TYEEK-EQQLVLDCVKQLS-------EANQQIASLSEELARKTEENRRQQEEITSLLSQIVD 245 (306)
T ss_pred Hh--------hccHH-HHHHHHHHHHHhh-------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01111 1122344444443 445666789999999999999999999999999877
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.68 E-value=4.5 Score=44.73 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccc
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDN 595 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~ 595 (878)
|.+.+-.|..+-+.|..+|....... .....+.....+.+|..+...|+....+.+.|+-.+
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~~~~-----~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~------------- 77 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELREKK-----GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEI------------- 77 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcc-----cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhh-------------
Confidence 56777777777777877777543321 011111233355566666666666555555444444
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 596 SEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.-+...+.++-..|.+........-.++..|..++..-+.....|+..+..|+++|.-
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 3344445666666666655555556777778888888888888888888888888865
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=4.2 Score=51.34 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=98.7
Q ss_pred cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcc-----cCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhH
Q 002808 550 RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTS-----HNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNR 624 (878)
Q Consensus 550 ~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~-----~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~ 624 (878)
...+..+++.+++.+..++++.+.||...++-+..+...- .++....+=---+.+|...++..-+.+|.-+++.+
T Consensus 732 ~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~e 811 (1174)
T KOG0933|consen 732 EQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELE 811 (1174)
T ss_pred hcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556777777888888877777776666554433211 00111111111234555556666666665555555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC--CCcchhhhhhhhccccccccchhhhhhhhhhchhhHH-HHHH
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQLNDALELRNF--SPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSR-LQVQ 701 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q 701 (878)
.=..+-+...-|+.+|+.++..+++||......-.. +.......+.... ++..++ ...+.++... ...+
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~-----~~~~~~---~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV-----EKDVKK---AQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HhHHHH---HHHHHHHHHHHHHhh
Confidence 555566666678888888888888887664432211 0000000000000 000001 1111222211 1112
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHH
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVA 755 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evt 755 (878)
-.||..+-.+.....-++...+..-+||--|-.--+.=++++.+++..|..+.+
T Consensus 884 dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~ 937 (1174)
T KOG0933|consen 884 DTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHE 937 (1174)
T ss_pred hHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhcc
Confidence 335555555555555666666666677776666655555555555555554433
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.46 E-value=1.7 Score=53.81 Aligned_cols=190 Identities=24% Similarity=0.312 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHH
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKIC 635 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~ 635 (878)
+++.+|++|+.|+...+..=..|..+|. .-....+.++.+|+++..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis----------------------------------~l~~~Er~lk~eL~qlr~ 467 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQIS----------------------------------SLTNNERSLKSELSQLRQ 467 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh----------------------------------hccccchHHHHHHHHHHH
Confidence 5677899999999887553333333331 111233567777788888
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHH
Q 002808 636 ECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTEL 715 (878)
Q Consensus 636 e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l 715 (878)
+|.+||..++.|..+...--. . .++.| .+|+.|...-
T Consensus 468 ene~Lq~Kl~~L~~aRq~DKq-----------------------------~-------------l~~LE-krL~eE~~~R 504 (697)
T PF09726_consen 468 ENEQLQNKLQNLVQARQQDKQ-----------------------------S-------------LQQLE-KRLAEERRQR 504 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------------H-------------HHHHH-HHHHHHHHHH
Confidence 888888888887777533100 0 00111 0122222222
Q ss_pred hHhhhhh-hhhhchhhhhhhhhhhhhHHHH-----------------HHHHhhHHHHHHHhhhhhhHHHHHHhhcCCccc
Q 002808 716 TEAKEQL-ELRNQKLSEESSYAKGLASAAA-----------------VELKALSEEVAKLMNHKERLTAELAAAKSSPTQ 777 (878)
Q Consensus 716 ~e~~~~l-~~~n~kl~ee~~yak~lasaaa-----------------velk~l~~evtkl~~~n~~l~~el~~~~~~~~~ 777 (878)
.+.-.|| +.|.+|..||.+-|+-+|.|++ -|+|.|--|....-.+...|..|+...|.-.
T Consensus 505 ~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~-- 582 (697)
T PF09726_consen 505 ASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE-- 582 (697)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2222222 2344566666666665443332 2566666666666677777777775554210
Q ss_pred ccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 002808 778 RRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKK 841 (878)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~ 841 (878)
.+...+.+.|-..|++-.++-.-||..|+.--++--+|=.-+-++|.
T Consensus 583 -----------------~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akr 629 (697)
T PF09726_consen 583 -----------------KESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKR 629 (697)
T ss_pred -----------------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 12223789999999999999999999999888877777555545443
No 60
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=2.1 Score=47.02 Aligned_cols=40 Identities=35% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhh
Q 002808 700 VQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKAL 750 (878)
Q Consensus 700 ~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l 750 (878)
.+..-|-.|+++...+.+++..|+ -.|.||.++|-+.++=
T Consensus 194 e~~~l~~~~aa~~a~~~~e~a~l~-----------~qka~a~a~a~~~a~~ 233 (265)
T COG3883 194 EKNALIAALAAKEASALGEKAALE-----------EQKALAEAAAAEAAKQ 233 (265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence 356677889999999999999998 3466666666666553
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.29 E-value=5.2 Score=49.93 Aligned_cols=131 Identities=24% Similarity=0.283 Sum_probs=69.4
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhch
Q 002808 614 FELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDIN 693 (878)
Q Consensus 614 ~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (878)
-|+|.|..||.+|.-+-.....++.+++..|.-||+|.-.||.+-.. . .+-+.+..+
T Consensus 403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~M---------V--------------~qLtdknln 459 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEM---------V--------------EQLTDKNLN 459 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH---------H--------------HHHHhhccC
Confidence 35677777777666666666666777777888888888777765422 1 111112222
Q ss_pred hhHHHHH---HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhh-----------hhhhhhhHHHHHHHHhhHHHHHHHhh
Q 002808 694 EDSRLQV---QAAEIEELNRKVTELTEAKEQLELRNQKLSEES-----------SYAKGLASAAAVELKALSEEVAKLMN 759 (878)
Q Consensus 694 ~~~~~~~---q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~-----------~yak~lasaaavelk~l~~evtkl~~ 759 (878)
-+-++.. -..++|.|.+=..+|.|.+.+|+.--.+=.+=+ --|-+-+.---+=++..-+=|.+|-.
T Consensus 460 lEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqd 539 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQD 539 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2222222 233455555666666666666665422222111 11122222223445666667777777
Q ss_pred hhhhHHHH
Q 002808 760 HKERLTAE 767 (878)
Q Consensus 760 ~n~~l~~e 767 (878)
|+..|..+
T Consensus 540 qlqe~~dq 547 (1243)
T KOG0971|consen 540 QLQELTDQ 547 (1243)
T ss_pred HHHHHHhh
Confidence 77666553
No 62
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.26 E-value=17 Score=49.80 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred HHHHHHhh-cCCCcceeeecccCCCCcccc
Q 002808 130 QHVVSGAM-DGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 130 ~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 158 (878)
......++ ++-|-.|++.|-+|+|||-..
T Consensus 156 d~AYr~mL~~renQSiLiTGESGAGKTeNT 185 (1930)
T KOG0161|consen 156 DEAYRNMLQDRENQSILITGESGAGKTENT 185 (1930)
T ss_pred HHHHHHHHhcCCCceEeeecCCCCCcchhH
Confidence 33344444 689999999999999999764
No 63
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.14 E-value=13 Score=46.66 Aligned_cols=49 Identities=35% Similarity=0.392 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Q 002808 518 DQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGK 571 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k 571 (878)
|..++.|+|+. -|++.--..+.++++.|..+- .+.++++.-++.++.+.
T Consensus 329 d~~~~~~~~~~---~e~~~~~~~l~~~~~ear~~~--~q~~~ql~~le~~~~e~ 377 (980)
T KOG0980|consen 329 DPRELQIEQLS---REVAQLKAQLENLKEEARRRI--EQYENQLLALEGELQEQ 377 (980)
T ss_pred ChhhHHHHHHH---HHHHHHhhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 88888888865 456666666777777665544 33555666666666654
No 64
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.08 E-value=2.2 Score=56.92 Aligned_cols=221 Identities=26% Similarity=0.306 Sum_probs=137.3
Q ss_pred CCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHH---HHhhhhhhhhHHHHhhhHHHH
Q 002808 551 NPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELA---AQLNEKSFELEVKAADNRIIQ 627 (878)
Q Consensus 551 ~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~---~q~~eKs~elE~ksadN~~lq 627 (878)
|++.+-+..++.-+..|+.--+.|+..|++-|-+....=.+ .+++ .|+...-+ ..|-.+..++=+.--.|.+|.
T Consensus 1159 R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~-~r~~--~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LR 1235 (1822)
T KOG4674|consen 1159 RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTA-ERAS--SQKSAVSDDEHKEILEKVEEVNLLRESNKVLR 1235 (1822)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh--hccchhhhhhhhHHHHHHHHHHHHHHhHHHHH
Confidence 44555566677777778888888888888777544432111 0000 01111111 112223333334448899999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHH
Q 002808 628 EQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEE 707 (878)
Q Consensus 628 EqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~ 707 (878)
+++......|.+|+..|..|+.-|..+-.. +..-.++|..
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~----------------------------------------l~el~~e~~~ 1275 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNE----------------------------------------LKELKAELQE 1275 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHH----------------------------------------HHHHHHHHHH
Confidence 999999999999999999998876441110 1112455566
Q ss_pred HHHHhHHHhHhhhhhhhhhchhhhh------hhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCccccccc
Q 002808 708 LNRKVTELTEAKEQLELRNQKLSEE------SSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTS 781 (878)
Q Consensus 708 lk~~~~~l~e~~~~l~~~n~kl~ee------~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~ 781 (878)
...++.-|-++.+.-..|||=|.+= ..|= .|++ |..+|.+|.+-.-++|+-|..++--.|+...
T Consensus 1276 ~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~-kL~~----ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k----- 1345 (1822)
T KOG4674|consen 1276 KVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE-KLKS----EISRLKEELEEKENLIAELKKELNRLQEKIK----- 1345 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 6666666666667777777766654 3343 3444 9999999999888888888888876663211
Q ss_pred ccccCcccccccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002808 782 AVRNGRRDGQIKRQNQDG-SSLDLKRELALSREREVSYEAALLEKDQQEAELQRK 835 (878)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~ 835 (878)
.+-|... ...++.+++..-..---.|++++.|+-..+-|+..+
T Consensus 1346 -----------~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~ 1389 (1822)
T KOG4674|consen 1346 -----------KQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDK 1389 (1822)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 345667777766666678999999988886666554
No 65
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.79 E-value=12 Score=47.12 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHH
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTA 766 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~ 766 (878)
+--++++|.-++.. ...+..+-.+.+-|..|.++.++-++.|-.|+--|-+-|-++- |+|...
T Consensus 526 ~rek~~kl~~ql~k-~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E--~EK~~k 588 (775)
T PF10174_consen 526 KREKHEKLEKQLEK-LRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE--NEKNDK 588 (775)
T ss_pred hhhHHHHHHHHHHH-HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhH
Confidence 34456666655555 3344566677888888888888777777777777766555554 444443
No 66
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.66 E-value=22 Score=47.65 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 002808 600 QSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNF 660 (878)
Q Consensus 600 qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~ 660 (878)
+.+..+......+..+++-+-...+.+..++..-.....+...++....+.|..+-+...+
T Consensus 340 ~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~ 400 (1353)
T TIGR02680 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGL 400 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555555556666666656666666666666666666666666666666555554444
No 67
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.65 E-value=20 Score=48.48 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHhhhhHHHHH
Q 002808 801 SLDLKRELALSREREV--SYEAALLEKDQQEAELQRKVEESKKREAYLE 847 (878)
Q Consensus 801 ~~~~~~e~~~~~~re~--~~e~~l~ek~~~e~el~~~~~e~k~~e~~le 847 (878)
.+.+..|+.-.++++. .-|..+.+.-....++++++.+++.+=..||
T Consensus 1438 ~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le 1486 (1822)
T KOG4674|consen 1438 TEAITKELFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLE 1486 (1822)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444555554444442 3455555666667778888888777764444
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.56 E-value=17 Score=45.20 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=22.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002808 616 LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELR 658 (878)
Q Consensus 616 lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~ 658 (878)
|-.|.-..-.+.+|+++|..+++++-..+..+=+|+-.++..+
T Consensus 171 L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~n 213 (1265)
T KOG0976|consen 171 LHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEK 213 (1265)
T ss_pred HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444445555666666555555555555555555555444
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.56 E-value=10 Score=45.23 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=12.7
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34556899999998765
No 70
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.47 E-value=4.6 Score=47.01 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 607 AQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 607 ~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.++++--.|++-+.+.....+++.++...++++++.++..+..||..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888999998889999999999988888865
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.35 E-value=4.5 Score=44.68 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=17.2
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002808 746 ELKALSEEVAKLMNHKERLTAELAAAKS 773 (878)
Q Consensus 746 elk~l~~evtkl~~~n~~l~~el~~~~~ 773 (878)
++.....|--.||+-.-.|..|+++-|.
T Consensus 277 ~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 277 EMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444556667777777777776653
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.24 E-value=18 Score=48.59 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh---hHHHHHHHHhhcCCC
Q 002808 802 LDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELA---NMWVLVAKLKKSHGA 866 (878)
Q Consensus 802 ~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~la---nmw~lvaklkk~~~~ 866 (878)
++|-..|.+++.|-.+||..+.-.+..=..|.++|+..+..-..++.++. +.|.-|=+|-+.+|.
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~ 1130 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGV 1130 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 68899999999999999999999888889999999999988888887654 579999999877764
No 73
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.14 E-value=9.1 Score=44.66 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=34.8
Q ss_pred HHHhHhhhhhhhh-hchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 713 TELTEAKEQLELR-NQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 713 ~~l~e~~~~l~~~-n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
..+.+|+.+++.+ |+-|..+..+.++|+.-++ +|..++.++-.++++-...-++++
T Consensus 202 ~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~----~L~~~Ias~e~~aA~~re~~aa~~ 258 (420)
T COG4942 202 AQLLEERKKTLAQLNSELSADQKKLEELRANES----RLKNEIASAEAAAAKAREAAAAAE 258 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 3446777888888887653 677788888888885544444333
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.96 E-value=19 Score=43.47 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=22.9
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 616 LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 616 lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
.+....++..|+.++.+....+.+|++++..|+++.
T Consensus 201 ~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 201 SEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666666665
No 75
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.92 E-value=24 Score=44.53 Aligned_cols=122 Identities=16% Similarity=0.294 Sum_probs=64.5
Q ss_pred HHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHH
Q 002808 523 LREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSF 602 (878)
Q Consensus 523 L~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal 602 (878)
||-||++|-+++..- -+||=.+ -.+-.+-++...++..++.=-.-.-.|+..|+++|.++ +.+.+|.+.+-
T Consensus 229 Lr~QvrdLtEkLetl--R~kR~ED-k~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~ra------R~e~keaqe~k 299 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETL--RLKRAED-KAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRA------RKEAKEAQEAK 299 (1243)
T ss_pred HHHHHHHHHHHHHHH--Hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 899999988776531 0111000 00111123333333333332233345788888888543 33455666665
Q ss_pred HHHHHHhhhhhhhhHHHHhhh-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 603 AELAAQLNEKSFELEVKAADN-------RIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 603 ~eL~~q~~eKs~elE~ksadN-------~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
++...-+..-.--+|.-+-|- +-||-++......+.+|.-+|.-||....+
T Consensus 300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666665555555544222 345555666666666666677777766543
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.64 E-value=4.2 Score=42.64 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
.-|+|.||.-...|-|++.+|-.++.-|-.| -..|..+|..|-.+|.||..|..-.+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE--------------~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKE--------------QQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 5699999999999999999998887766554 46789999999999999988876554
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.45 E-value=3.5 Score=49.85 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHH----------HhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhh
Q 002808 554 KEQLQVEIKKLRDE----------IKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADN 623 (878)
Q Consensus 554 ~e~iq~e~~~l~~E----------i~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN 623 (878)
+..+..|+.+|+.. ...-+.||..|++++...... +.+...+++++...|++-..+++....+-
T Consensus 326 ~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~------i~~~~~~ysel~e~leel~e~leeie~eq 399 (569)
T PRK04778 326 NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITER------IAEQEIAYSELQEELEEILKQLEEIEKEQ 399 (569)
T ss_pred HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666 555555666666665433221 22233335666666666666677777777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 624 RIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 624 ~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
..+++.|+.....-.+....+..++..|..
T Consensus 400 ~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 400 EKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777754
No 78
>PRK09039 hypothetical protein; Validated
Probab=93.39 E-value=1.8 Score=49.23 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-cccCccc
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEE-AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM-TSHNTMD 594 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq-a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~-~~~~k~~ 594 (878)
.+++.-+.++|+.+..+|+. |.+. +-.+.....++.++..++.++...+.+-..||..+..... .+.....
T Consensus 45 s~~i~~~~~eL~~L~~qIa~-------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~ 117 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAE-------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGR 117 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHH
Confidence 45566666666666666655 4433 2344445567888999999999888888888887753222 1111112
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQ 650 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~q 650 (878)
...+...|.++-..|.+.--++..-.++...|..||......+...+......+.|
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444445555555555555544555555555444444444443333333333
No 79
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.23 E-value=2.1 Score=44.96 Aligned_cols=107 Identities=28% Similarity=0.307 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCccc
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAA--RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMD 594 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~--~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~ 594 (878)
-+...-+-..++++++||--....+++|.+-+. +=++-+.++.++..++..++++...|..||+++.
T Consensus 81 q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le----------- 149 (194)
T PF15619_consen 81 QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE----------- 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 444555555667778888877888888877755 5566788999999999999999999999999882
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
=...++..-....+.|..++ ..++..|+++|..|++.|..
T Consensus 150 --L~~k~~~rql~~e~kK~~~~-----------------~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 150 --LENKSFRRQLASEKKKHKEA-----------------QEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred --HHhhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 01112233333334444433 35777888888888887754
No 80
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.10 E-value=30 Score=45.03 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002808 698 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 773 (878)
Q Consensus 698 ~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~ 773 (878)
+++...+...+-.....|.+.+..|.-.|.+|.-++---++.-...--+.++|-+++.-|-..|..+..++.-+..
T Consensus 576 iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 576 IQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 3444445667777777778888888777777777766666777777778888889999999999888888887765
No 81
>PRK06893 DNA replication initiation factor; Validated
Probab=93.05 E-value=0.074 Score=56.42 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=32.7
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++||..++... .. .+..+...+-.++|..++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNN-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCCh-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 3689999996542 21 12222333345788888999999999999986
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.92 E-value=0.056 Score=57.13 Aligned_cols=49 Identities=27% Similarity=0.507 Sum_probs=30.4
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+||..+.. ..++.+|. .+..+...--..|| .+|-||++|+||||-|.
T Consensus 4 ~~tFdnfv~g-~~N~~a~~-~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYA-AAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS--T-TTTHHHHH-HHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCccccCCcC-CcHHHHHH-HHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 5999987754 34566665 33444444112233 47889999999999875
No 83
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.76 E-value=0.16 Score=59.91 Aligned_cols=68 Identities=28% Similarity=0.429 Sum_probs=48.9
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc---------------------------
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH--------------------------- 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~--------------------------- 159 (878)
..|....-|.|.-+|-.. ...||+.+-.|.-.-+ --|.|||||||||-
T Consensus 3 ~~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 357777889998888653 4566676666665444 46999999999994
Q ss_pred ---CCCceeEEEEEeeeeeccee
Q 002808 160 ---TPNREFLLRVSYLEIYNEVV 179 (878)
Q Consensus 160 ---g~~~ef~V~vS~lEIYnE~I 179 (878)
-|+....-.||||.-|.-.-
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHhCcCcceEEEeeeccccCccc
Confidence 34445667889999886543
No 84
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.58 E-value=35 Score=42.62 Aligned_cols=190 Identities=21% Similarity=0.270 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccch
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS 596 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ 596 (878)
..+|..|.+||--..-|= ..++..|. ..|.++..-+.++.+..++|..|-.++. .+..-....+..
T Consensus 264 ~~EiqKL~qQL~qve~EK---~~L~~~L~----------e~Q~qLe~a~~als~q~eki~~L~e~l~-aL~~l~~~ke~~ 329 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREK---SSLLSNLQ----------ESQKQLEHAQGALSEQQEKINRLTEQLD-ALRKLQEDKEQQ 329 (717)
T ss_pred hHHHHHHHHHHHHHhhHH---HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccchhhh
Confidence 567999999998776544 44555552 2466777777777777777777777762 222211100111
Q ss_pred hhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhcccc
Q 002808 597 EVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSL 676 (878)
Q Consensus 597 ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (878)
.......+...+-+ .+..|+=..-+++|+-++..-.+++..|+.++..|+..+...-..-
T Consensus 330 ~~~d~~~~~~s~~d--~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~------------------ 389 (717)
T PF09730_consen 330 SAEDSEKERDSHED--GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERY------------------ 389 (717)
T ss_pred hhhhcccccccccc--cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 01000000000000 1222332233788999999999999999999999988876622210
Q ss_pred ccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhH-------hhhhhhhhhchhhhhhhhhhhhhHHHHHHHHh
Q 002808 677 NGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTE-------AKEQLELRNQKLSEESSYAKGLASAAAVELKA 749 (878)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e-------~~~~l~~~n~kl~ee~~yak~lasaaavelk~ 749 (878)
.++. ..-..++..|+.++..+.- .-..|+...+.+..-|.=+-+--++|.=||-.
T Consensus 390 ----------------~~ek--~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvt 451 (717)
T PF09730_consen 390 ----------------KQEK--DRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVT 451 (717)
T ss_pred ----------------HHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0000 0013445555555555443 55667777777777776666666778888999
Q ss_pred hHHHHHHHh
Q 002808 750 LSEEVAKLM 758 (878)
Q Consensus 750 l~~evtkl~ 758 (878)
+++|.+.|=
T Consensus 452 fSEeLAqLY 460 (717)
T PF09730_consen 452 FSEELAQLY 460 (717)
T ss_pred HHHHHHHHH
Confidence 999988774
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.54 E-value=31 Score=41.91 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=54.0
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q 002808 746 ELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEK 825 (878)
Q Consensus 746 elk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek 825 (878)
..+.+..-+..+..+|..|..|+...+.+=. - + ++....+..+..+|..-..+=..++..+.++
T Consensus 311 ~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~--l-~-------------~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~ 374 (569)
T PRK04778 311 NSDTLPDFLEHAKEQNKELKEEIDRVKQSYT--L-N-------------ESELESVRQLEKQLESLEKQYDEITERIAEQ 374 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccc--c-C-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556777777888888888888887764310 0 0 0111123344455554444444444555555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHhh
Q 002808 826 DQQEAELQRKVEESKKREAYLENELANMWVLVAKLKK 862 (878)
Q Consensus 826 ~~~e~el~~~~~e~k~~e~~len~lanmw~lvaklkk 862 (878)
...=.+++..+++...+-..++++...||-.+..|++
T Consensus 375 ~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 375 EIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555544
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.40 E-value=16 Score=46.46 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSI 586 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~ 586 (878)
+.........||++.+++|+.||++....+
T Consensus 263 l~e~~~k~~~ei~~le~~ikei~~~rd~em 292 (1174)
T KOG0933|consen 263 LDESLGKTDKEIESLEKEIKEIEQQRDAEM 292 (1174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777888888888888888875433
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.29 E-value=24 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.8
Q ss_pred hcCCCcceeeecccCCCCccccc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.|+=|-|+..--.++||-|.|-
T Consensus 84 GrGaFGEV~lVr~k~t~~VYAMK 106 (1317)
T KOG0612|consen 84 GRGAFGEVALVRHKSTEKVYAMK 106 (1317)
T ss_pred cccccceeEEEEeeccccchhHH
Confidence 35888888888899999999994
No 88
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.92 E-value=39 Score=41.61 Aligned_cols=63 Identities=29% Similarity=0.293 Sum_probs=49.9
Q ss_pred HhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002808 748 KALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQ 827 (878)
Q Consensus 748 k~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~ 827 (878)
--|++|+-||.+||++|..... -+.-|+.+|..-.||=+++=.+.-||+.
T Consensus 883 s~laeElvklT~e~e~l~ek~~------------------------------~~p~~~~~ledL~qRy~a~LqmyGEk~E 932 (961)
T KOG4673|consen 883 SSLAEELVKLTAECEKLREKAD------------------------------RVPGIKAELEDLRQRYAAALQMYGEKDE 932 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------------hhHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3588999999999999954432 2345799999999999888888899998
Q ss_pred HHHHHHHHHHHhh
Q 002808 828 QEAELQRKVEESK 840 (878)
Q Consensus 828 ~e~el~~~~~e~k 840 (878)
.-+||+--|.+-|
T Consensus 933 e~EELrlDl~dlK 945 (961)
T KOG4673|consen 933 ELEELRLDLVDLK 945 (961)
T ss_pred HHHHHHhhHHHHH
Confidence 8888877666543
No 89
>PRK06620 hypothetical protein; Validated
Probab=91.63 E-value=0.084 Score=55.71 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=33.0
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCC---cceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN---GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN---~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+...++ ...|..+. .+.+. . |+| ..+|-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~-~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIK-NWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHH-HHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 46899987765444 55676443 23321 1 444 348999999999999996
No 90
>PRK09039 hypothetical protein; Validated
Probab=91.56 E-value=5.8 Score=45.14 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 002808 801 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESK 840 (878)
Q Consensus 801 ~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k 840 (878)
+.-|+.++.+=+..=++||++|..-+.+.++.+.+|++-+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555666666666666666666666654
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.49 E-value=19 Score=44.13 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccc
Q 002808 598 VSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLN 677 (878)
Q Consensus 598 v~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (878)
+...+.+|-..++.+..|.--|..+.+.+.+++.....++..-++...+|+.++..+-.. .+...|-++.-....
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~---~~Rs~Yt~RIlEIv~-- 498 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD---VNRSAYTRRILEIVK-- 498 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHH--
Confidence 344444455555545555545556666666666666666666666666666655432221 122222222111111
Q ss_pred cccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhch
Q 002808 678 GEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQK 728 (878)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~k 728 (878)
+.+|...+...+..+.. .-+-||..|.-++.+==-.-+.|-.++-|
T Consensus 499 ---NI~KQk~eI~KIl~DTr--~lQkeiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 499 ---NIRKQKEEIEKILSDTR--ELQKEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred ---hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 12233333333333332 22456666666666666666666667666
No 92
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.48 E-value=1.2 Score=50.11 Aligned_cols=123 Identities=25% Similarity=0.254 Sum_probs=59.0
Q ss_pred HHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhH
Q 002808 521 DLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQ 600 (878)
Q Consensus 521 dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~q 600 (878)
..|-.|++....|...-...|++|.+......+..+++.+++.++.|.++..+++..||+.- .++.+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~-------------~~l~~ 78 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKER-------------EELDQ 78 (314)
T ss_dssp ------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
Confidence 34445566667777777888888885555555667788888888888888888888777743 44555
Q ss_pred HHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 601 SFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 601 al~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
.+.+|..+..+.-.+-+..-.++..++=++.+...+..++...+.....||..+-.
T Consensus 79 el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 79 ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555444333333444666666666666666677777777777777655443
No 93
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.87 E-value=12 Score=42.34 Aligned_cols=102 Identities=19% Similarity=0.304 Sum_probs=71.7
Q ss_pred cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh------cccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhh
Q 002808 550 RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM------TSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADN 623 (878)
Q Consensus 550 ~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~------~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN 623 (878)
.+-.+-+++.|+..|.+.+.+.+-.|+.|-+.|...-. +.+...+-..+..-|+++-.+ .+---.|.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q-------~~qLe~d~ 149 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ-------IEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 34446678889999999999999999999888765321 222222333344444444333 23334577
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002808 624 RIIQEQLNQKICECEGLQETIGFLKQQLNDALELR 658 (878)
Q Consensus 624 ~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~ 658 (878)
+.+-|+.++..+|-...+.++++|-.+|+.+|.+.
T Consensus 150 qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~ 184 (319)
T PF09789_consen 150 QSLLDEKEELVTERDAYKCKAHRLNHELNYILNGD 184 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999999999988753
No 94
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=90.68 E-value=2.1 Score=44.55 Aligned_cols=95 Identities=26% Similarity=0.279 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhh---cccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHH
Q 002808 560 EIKKLRDEIKGKNDQIALLEKQIADSIM---TSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICE 636 (878)
Q Consensus 560 e~~~l~~Ei~~k~~qi~~Le~~i~~s~~---~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e 636 (878)
-|.+|+..+..-+..+..||+++..... .+.......+.+..|++....|++.-+-.+--+.-|-.|-|||.+-...
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~ 96 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKA 96 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999954311 1111344566778888899999998888888888899999999999999
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 002808 637 CEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 637 ~~~lqeel~~Lk~ql~~~ 654 (878)
+..|.+++..|..++..+
T Consensus 97 N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998774
No 95
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.26 E-value=0.15 Score=56.57 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+|..+++--+|.|+..|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678888999999999999999999999984
No 96
>PRK01156 chromosome segregation protein; Provisional
Probab=89.77 E-value=69 Score=40.85 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.7
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
..+-+|++|||||..+.
T Consensus 25 i~~I~G~NGsGKSsile 41 (895)
T PRK01156 25 INIITGKNGAGKSSIVD 41 (895)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999998763
No 97
>PRK05642 DNA replication initiation factor; Validated
Probab=89.73 E-value=0.23 Score=52.95 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=29.3
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhc---CC-CcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD---GI-NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~---Gy-N~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+... +..+ ...+....+ ++ ...++-||++|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 358999888432 2223 333333322 22 2468899999999999986
No 98
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.61 E-value=0.27 Score=57.86 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
...+..++..-+|.|+.-|+||||||.||+
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 345566788889999999999999999997
No 99
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.53 E-value=0.2 Score=60.72 Aligned_cols=50 Identities=30% Similarity=0.466 Sum_probs=34.5
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+.... +..+|. .+..++...-.+||. ||-||.+|+||||-+.
T Consensus 283 ~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 3589987664333 444553 445555544456776 8999999999999986
No 100
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=89.43 E-value=9.3 Score=40.58 Aligned_cols=138 Identities=22% Similarity=0.211 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcc--
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTM-- 593 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~-- 593 (878)
|..++.-|..||-....+++.-.+-|+-|.+-... -++...+|..|+.|+...+...+..-+++-.-+--.++..
T Consensus 45 y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~---k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEk 121 (206)
T PF14988_consen 45 YAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRL---KEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEK 121 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777766666555555544433222 2233445555555555433332222222211111111100
Q ss_pred c--chhhhHHHHHHHHHhhhhhhhhHHHH------------hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 594 D--NSEVSQSFAELAAQLNEKSFELEVKA------------ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 594 ~--~~ev~qal~eL~~q~~eKs~elE~ks------------adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
+ -..+.+--+.-..-++.|.+-||..| ++|..|+++|.+..-++..|+.....|+.|-..+..
T Consensus 122 e~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 122 EASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01222222333344566666666544 999999999999999999999999999988666543
No 101
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.20 E-value=14 Score=37.15 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHH
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKIC 635 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~ 635 (878)
++..++++.+.+...-+++|-.||+-+..++.. .+.+ ..+.|..-+++..|+++|..-+.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~-------------~e~~-------~~daEn~k~eie~L~~el~~lt~ 66 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQEN-------------KECL-------ILDAENSKAEIETLEEELEELTS 66 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh-------------HHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888877322221 1111 12355556666666666666666
Q ss_pred HHHhHHHHHHHHHHH
Q 002808 636 ECEGLQETIGFLKQQ 650 (878)
Q Consensus 636 e~~~lqeel~~Lk~q 650 (878)
++..|+.++..+...
T Consensus 67 el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 67 ELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555544
No 102
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.19 E-value=2.3 Score=44.36 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=41.5
Q ss_pred HHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 603 AELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 603 ~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
..|-..+..-..+++.|.+.|..|++++....-+++.+++.+..|+..=..+++
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556688888999999999999999999999999888887555443
No 103
>PRK12377 putative replication protein; Provisional
Probab=89.16 E-value=0.31 Score=52.84 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=36.2
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..+||........|..++. .+..++..+..+. ..|+-||++|+||||.+.
T Consensus 70 ~~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred cCCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 3478876555556666776 4566777776654 467889999999999986
No 104
>PRK09087 hypothetical protein; Validated
Probab=89.12 E-value=0.2 Score=53.34 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=31.9
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+....+ ..+|.. +.....-.+..++-||++||||||-+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 35889988864444 447763 333222235568999999999999997
No 105
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.04 E-value=80 Score=40.57 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=13.4
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
+..+-+|+||||||.-|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44556899999998766
No 106
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.03 E-value=20 Score=42.12 Aligned_cols=88 Identities=24% Similarity=0.324 Sum_probs=45.7
Q ss_pred HHHHHHHHh-hhHHHHHhhhHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchh
Q 002808 520 IDLLREQQK-ILAGEVALHSSALKRLSEEAARNPQK-EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSE 597 (878)
Q Consensus 520 ~dlL~eQlk-~~~~Ei~~~ss~lkrL~eqa~~~~~~-e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~e 597 (878)
+..|+|.-+ +++|+..++ +..+-|+.-...+|-- ++++.||..++.||+..+.+|..|-.+|..-..+ .+++..
T Consensus 297 i~~l~ek~r~l~~D~nk~~-~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is---~e~fe~ 372 (622)
T COG5185 297 IKTLREKWRALKSDSNKYE-NYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIS---TEQFEL 372 (622)
T ss_pred HHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCC---HHHHHH
Confidence 333444443 333444433 3345555555555543 4555566666666666666666665555433322 235666
Q ss_pred hhHHHHHHHHHhhh
Q 002808 598 VSQSFAELAAQLNE 611 (878)
Q Consensus 598 v~qal~eL~~q~~e 611 (878)
|-|--++|..++|.
T Consensus 373 mn~Ere~L~reL~~ 386 (622)
T COG5185 373 MNQEREKLTRELDK 386 (622)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666653
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.92 E-value=0.26 Score=57.62 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=33.4
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+.. ..+...|..+ ..++.. -..||. +|-||++|+||||.|.
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 46999987753 4455666643 333332 123665 9999999999999986
No 108
>PRK06526 transposase; Provisional
Probab=88.86 E-value=0.23 Score=53.87 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=28.5
Q ss_pred eccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
||.-|.+.-++..+..-.....+. .|.| |+.||++|+||||.+.
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAI 116 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHH
Confidence 444455555555555544444443 3444 7889999999999986
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.85 E-value=35 Score=37.23 Aligned_cols=109 Identities=24% Similarity=0.302 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHH-HhcCCc-------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccC
Q 002808 520 IDLLREQQKILAGEVALHSSALKRLSEE-AARNPQ-------KEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (878)
Q Consensus 520 ~dlL~eQlk~~~~Ei~~~ss~lkrL~eq-a~~~~~-------~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~ 591 (878)
|..|+-+++.+.-.+.-+--.|+++..+ ...+.. .+.++.++.+++.+|++.+++|+.+|..+. .
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-~------ 84 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-A------ 84 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------
Confidence 3344445555555555555555555544 222222 333445555555555555555555555551 1
Q ss_pred cccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 592 TMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 592 k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
+++. .+ +..-..+..+++++++.+..++..+.+++..|+.++..
T Consensus 85 ---v~~~--------~e-------~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 85 ---VKDE--------RE-------LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred ---cccH--------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 01 11112344455555666666666666666666665544
No 110
>PRK08116 hypothetical protein; Validated
Probab=88.57 E-value=0.29 Score=53.49 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=36.1
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhc--CCCcceeeecccCCCCcccccC
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD--GINGTIFAYGVTSSGKTHTMHT 160 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~g 160 (878)
..++||... .+..+..+|. .+...++.+.. +.|..++-||++|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 357888655 3455555665 55666676543 3455699999999999999863
No 111
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.56 E-value=77 Score=39.76 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCC
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSS 774 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~ 774 (878)
.-.||.+|||.+.++--+|..|-..-+.+--..-.| -++++..+-...+|.+.|.+.+..
T Consensus 263 ~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a--------------~~als~q~eki~~L~e~l~aL~~l 322 (717)
T PF09730_consen 263 NLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHA--------------QGALSEQQEKINRLTEQLDALRKL 322 (717)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999999999999987766554433333 345555556666777777777663
No 112
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.56 E-value=0.31 Score=51.98 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=30.8
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+.. .+..++..+ ..++. ......++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 35788876654 555566533 22222 2223478999999999999986
No 113
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.44 E-value=4.9 Score=42.55 Aligned_cols=90 Identities=30% Similarity=0.398 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccch
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS 596 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ 596 (878)
.-+|.||..|||+--.||+...+- |-.|...+++.+-+++..+.++.
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~E--------------------iv~Lr~ql~e~~~~l~~~~~~~~------------- 55 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSE--------------------IVSLRAQLRELRAELRNKESQIQ------------- 55 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhH--------------------HHHHHHHHHHHHHHHHhhHHHHH-------------
Confidence 346999999999999999987664 44444444444444444444442
Q ss_pred hhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 597 EVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 597 ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
+|-..+ ..|..+..+.+.+|+.+.++..-|.+.+..|...+..
T Consensus 56 -------~l~~~~-------~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~ 98 (202)
T PF06818_consen 56 -------ELQDSL-------RTKQLELEVCENELQRKKNEAELLREKLGQLEAELAE 98 (202)
T ss_pred -------HHHHHH-------HHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHH
Confidence 122222 2344444556666777766666666666666555544
No 114
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.96 E-value=0.32 Score=56.69 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=31.9
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..... ..+...|.. +..+...--..|| .+|-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 46889875432 345556653 3444443222344 47889999999999986
No 115
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.91 E-value=73 Score=38.76 Aligned_cols=135 Identities=23% Similarity=0.255 Sum_probs=84.2
Q ss_pred HHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHH--HHHhhHHHHHHHhhhhhhHHHHHHhhcCCccccccc
Q 002808 704 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAV--ELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTS 781 (878)
Q Consensus 704 e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaav--elk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~ 781 (878)
++++.......+.+.-++|-..-. ||..|--.| .++.+.+-++.+..+|..|..|+...+.+=.
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le---------~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~----- 337 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILE---------KEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT----- 337 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 444444444444444444433222 344444444 3678889999999999999999998875320
Q ss_pred ccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHh
Q 002808 782 AVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLK 861 (878)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvaklk 861 (878)
--+++...+..+..++..-..+=..+...+.++...=.+++..+++..++=..+|.+...||--|+.|.
T Consensus 338 -----------L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 338 -----------LNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111133455666655555556677777777777777777777777777777777777777777775
Q ss_pred hc
Q 002808 862 KS 863 (878)
Q Consensus 862 k~ 863 (878)
+.
T Consensus 407 ~d 408 (560)
T PF06160_consen 407 KD 408 (560)
T ss_pred HH
Confidence 54
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.70 E-value=0.34 Score=55.57 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=31.4
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+. +..+...|. .+..+...--..|| .+|-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 4689998543 344555664 33444443211244 47889999999999986
No 117
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.64 E-value=15 Score=45.16 Aligned_cols=162 Identities=22% Similarity=0.268 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQV 700 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (878)
.=|..|.++|..|-..+..+.+.+..|+++|..+=+.- .
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l-----------------------------------------~ 129 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKL-----------------------------------------Q 129 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh-----------------------------------------H
Confidence 34667778888888888888888888888886532210 0
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHH--hhHHHHHHHhhhhhhHHHHHHhhcCCcccc
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELK--ALSEEVAKLMNHKERLTAELAAAKSSPTQR 778 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk--~l~~evtkl~~~n~~l~~el~~~~~~~~~~ 778 (878)
|. ++ ...|-|.++.| |..++++.+-|.+ +.-|=.-||-.||+++++||--++..-
T Consensus 130 qs-----~r--ae~lpeveael-------------~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqre--- 186 (916)
T KOG0249|consen 130 QS-----LR--AETLPEVEAEL-------------AQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQRE--- 186 (916)
T ss_pred hH-----Hh--hhhhhhhHHHH-------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 11 01 11122222333 3333444444444 233456789999999999999877211
Q ss_pred cccccccCccccccccc-CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhhhhHHHHHhhhhhHH
Q 002808 779 RTSAVRNGRRDGQIKRQ-NQDGSSLDLKRELALSREREVSYEAALLEKDQQE---AELQRKVEESKKREAYLENELANMW 854 (878)
Q Consensus 779 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e---~el~~~~~e~k~~e~~len~lanmw 854 (878)
+.+ +-|.+|. |... -++-.+.++|-+|||.+ +.++ +-+++++++..+-+..|-++....-
T Consensus 187 emn-------eeh~~rlsdtvd-----ErlqlhlkermaAle~k----n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr 250 (916)
T KOG0249|consen 187 KMN-------EEHNKRLSDTVD-----ERLQLHLKERMAALEDK----NRLEQELESVKKQLEEMRHDKDKLRTDIEDLR 250 (916)
T ss_pred Hhh-------hhhccccccccH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111 1111211 1111 44555677777776653 4444 4457888888888888888888888
Q ss_pred HHHHHHhh
Q 002808 855 VLVAKLKK 862 (878)
Q Consensus 855 ~lvaklkk 862 (878)
-+|+.|+.
T Consensus 251 ~e~~qL~~ 258 (916)
T KOG0249|consen 251 GELDQLRR 258 (916)
T ss_pred HHHHHHHH
Confidence 88888874
No 118
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.42 E-value=1e+02 Score=39.81 Aligned_cols=49 Identities=31% Similarity=0.355 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGK 571 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k 571 (878)
.-++.-+.+-++-|--|+.-++..|-+|.+. -+.++.|+.+|++||.+-
T Consensus 176 ~velAdle~kir~LrqElEEK~enll~lr~e------Lddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 176 EVELADLEKKIRTLRQELEEKFENLLRLRNE------LDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555666666544 345667788888887765
No 119
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.23 E-value=1.1e+02 Score=39.89 Aligned_cols=162 Identities=17% Similarity=0.279 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhc-ccCcccchhhhHHHHHHHHHhhhhhhhhH-------HHHhhhHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMT-SHNTMDNSEVSQSFAELAAQLNEKSFELE-------VKAADNRIIQE 628 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~-~~~k~~~~ev~qal~eL~~q~~eKs~elE-------~ksadN~~lqE 628 (878)
.+.+++.+..+|+-+++.++.|++.|.+-... ..+.-..+++---+.++...-|...-|++ .+-.+-..+++
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~ 358 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKE 358 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888888888888543332 11111122333333333333333332322 22244556677
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHH
Q 002808 629 QLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEEL 708 (878)
Q Consensus 629 qL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~l 708 (878)
+....++....+..++..|..|+.++=+..+ .+.. ..+-.-+.+++.|
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~------------------------------~~~~--~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIADLEKQTN------------------------------NELG--SELEERENKLEQL 406 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hhhh--hhHHHHHHHHHHH
Confidence 7777777777778888888888776333210 0000 1111236688888
Q ss_pred HHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhh
Q 002808 709 NRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKAL 750 (878)
Q Consensus 709 k~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l 750 (878)
++++..|.+....|...-+.+-+++.--.+=..+.--++..|
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888888888888888777665555444443333333
No 120
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.20 E-value=0.18 Score=62.24 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHH-
Q 002808 554 KEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQ- 632 (878)
Q Consensus 554 ~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~- 632 (878)
+..++.++..|++|+..+..+...++.++ ..++....-+.++..+|-..+.+.+.|+|+|..
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~-----------------e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~l 303 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIEL-----------------EELEKEIDELRQENEELQAEAREARALRDELDEL 303 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34467777777777776655444443333 222333455566777888888999999988654
Q ss_pred --HHHHHHhHHHHHHHHHHHHHHHH
Q 002808 633 --KICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 633 --K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
+...+.-++.+|..||+.|.+.-
T Consensus 304 R~~a~r~~klE~~ve~YKkKLed~~ 328 (713)
T PF05622_consen 304 REKADRADKLENEVEKYKKKLEDLE 328 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677789999999999987644
No 121
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=87.17 E-value=42 Score=40.56 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH
Q 002808 513 SIKTIDQIDLLREQQKILAGEVALHSSALKRLSEE 547 (878)
Q Consensus 513 ~~~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq 547 (878)
..+..=.++..++++..+++.+.-+.-.++++...
T Consensus 336 ~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~s 370 (607)
T KOG0240|consen 336 WVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNS 370 (607)
T ss_pred hhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33445567888888888888877776667766555
No 122
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.17 E-value=1.1e+02 Score=39.87 Aligned_cols=190 Identities=20% Similarity=0.264 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHH
Q 002808 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKI 634 (878)
Q Consensus 555 e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~ 634 (878)
+.++..|.+|+..++..+.+|+.+...|.+.-... -..+.+. -.+.+|....-.+..++|.+.+....++++|.+-.
T Consensus 692 ~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~--e~~~~~~-~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~ 768 (1074)
T KOG0250|consen 692 EELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTA--EEKQVDI-SKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIE 768 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677888888888888888888888887655431 1122222 23577777777778888888888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhch---hhHHHHH-HHHHHHHHHH
Q 002808 635 CECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDIN---EDSRLQV-QAAEIEELNR 710 (878)
Q Consensus 635 ~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-q~~e~e~lk~ 710 (878)
.+..++.+....+++-|...+..-+..-.. .. ....+-.+ +..+-.. +-.-.++|+|
T Consensus 769 ~e~~e~~~~~~~~~~~l~~e~~~l~~l~~e--------l~-----------~r~dk~~s~e~~~~HyE~~~K~~l~~l~~ 829 (1074)
T KOG0250|consen 769 LEAQELEEYYAAGREKLQGEISKLDALKEE--------LK-----------LREDKLRSAEDEKRHYEDKLKSRLEELKQ 829 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HH-----------HHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Confidence 888888888887777776655432110000 00 00000000 0000000 0113455566
Q ss_pred HhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002808 711 KVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 773 (878)
Q Consensus 711 ~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~ 773 (878)
.-.++...+..+ +|+..-|-.-+..-.+|+.+|--=|..+-..+.||.......++
T Consensus 830 ~E~~~~~~e~~~-------~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee 885 (1074)
T KOG0250|consen 830 KEVEKVNLEEPR-------AEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEE 885 (1074)
T ss_pred HHHHHHhhhcch-------hhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544 44444454455555578887744444455566666666555554
No 123
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.82 E-value=1.2e+02 Score=39.91 Aligned_cols=136 Identities=19% Similarity=0.257 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh----cccC
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAA-RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM----TSHN 591 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~-~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~----~~~~ 591 (878)
.+..+.+..+|-...+....+...+-.+-++-. .++---.+...+.++..+.+....+|.-|+++|.+.-. ....
T Consensus 777 ~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d 856 (1293)
T KOG0996|consen 777 KESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVD 856 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 345777888887777777777666655555522 22222234455555555555555555555555543322 2333
Q ss_pred cccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Q 002808 592 TMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECE-GLQETIGFLKQQLND 653 (878)
Q Consensus 592 k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~-~lqeel~~Lk~ql~~ 653 (878)
+..+.++...+++|-.+|++-- |--.|-+....||.++..-.-+.- --..+|..+.+||..
T Consensus 857 ~~~l~~~~~~ie~l~kE~e~~q-e~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~ 918 (1293)
T KOG0996|consen 857 KKRLKELEEQIEELKKEVEELQ-EKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDK 918 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHH
Confidence 3444555556777777777533 222222344444444433322222 223445555555533
No 124
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.82 E-value=2.4 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=18.9
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHH
Q 002808 745 VELKALSEEVAKLMNHKERLTAE 767 (878)
Q Consensus 745 velk~l~~evtkl~~~n~~l~~e 767 (878)
-|+..|-.+|..+-.-|.||-.=
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkev 628 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEV 628 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999998543
No 125
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.61 E-value=0.62 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=18.8
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+....++-||++|+|||+++.
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 4566789999999999999984
No 126
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.55 E-value=24 Score=34.70 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHh
Q 002808 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEG 639 (878)
Q Consensus 560 e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~ 639 (878)
++..++.+++..+.++...+.++... +.|+........+.-.+|-.-..---.-......+.++++....++.+
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~------~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~ 77 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSL------REDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINE 77 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666555321 223333333333333344322221112234444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhh
Q 002808 640 LQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAK 719 (878)
Q Consensus 640 lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~ 719 (878)
|..++...+..|...-. .-+.....-..||++++.+...|.+-|
T Consensus 78 l~~~~~~a~~~l~~~e~------------------------------------sw~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 78 LKAEAESAKAELEESEA------------------------------------SWEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHH------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555432110 000112234679999999999999999
Q ss_pred hhhhhhhchh
Q 002808 720 EQLELRNQKL 729 (878)
Q Consensus 720 ~~l~~~n~kl 729 (878)
.=|+.|-.-|
T Consensus 122 ~lLh~QlE~l 131 (132)
T PF07926_consen 122 KLLHDQLESL 131 (132)
T ss_pred HHHHHHHhhc
Confidence 8888775543
No 127
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.40 E-value=0.51 Score=51.10 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=33.4
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++||........|..++.. +...++.+..|+ ..++-||.+|+||||.+.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 46777654444456666653 444555554443 368889999999999986
No 128
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.36 E-value=0.44 Score=55.89 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=32.3
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+||..+... ++...|. .+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 58999877544 4555664 44444432111244 48899999999999996
No 129
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.76 E-value=0.69 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.6
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+....++-||++|+|||+++.
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4555678999999999999985
No 130
>PRK08181 transposase; Validated
Probab=85.61 E-value=0.72 Score=50.65 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=27.6
Q ss_pred EeccccCCCCcchhHHHHHHH-HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQ-HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~-plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.||.-+.+..+...+...... ..++ .|.| |+-||++|+||||-+.
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHH
Confidence 344445555555444443221 2333 4555 8889999999999986
No 131
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.60 E-value=0.87 Score=57.22 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.4
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|-+.+||-||+||+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3555678999999999999984
No 132
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.52 E-value=6 Score=42.00 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=25.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 619 KAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 619 ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
-..+|..|++||.....++..++.++..++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888887777777777654
No 133
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.38 E-value=0.76 Score=47.69 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=31.6
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||....+ .+..++...- .++ ..+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 35788877732 4445555332 222 25667789999999999999985
No 134
>PRK08727 hypothetical protein; Validated
Probab=85.04 E-value=0.55 Score=50.02 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=27.2
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCC-cceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN-GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN-~tIfAYGqTGSGKTyTM~ 159 (878)
.|+||..+..... .+..+ .. +..|+. -.|+-||++|+||||.+.
T Consensus 15 ~~~f~~f~~~~~n---~~~~~-~~----~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 15 DQRFDSYIAAPDG---LLAQL-QA----LAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred cCChhhccCCcHH---HHHHH-HH----HHhccCCCeEEEECCCCCCHHHHHH
Confidence 5788887644332 22211 11 222332 359999999999999986
No 135
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.82 E-value=33 Score=39.50 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICE 636 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e 636 (878)
...++.+|..++...-+.|..-|++|-. -|+.|..+|-+..-+|.........+++-+.+++.+
T Consensus 239 ~~~~L~kl~~~i~~~lekI~sREk~iN~----------------qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 239 TKSQLDKLQQDISKTLEKIESREKYINN----------------QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4567999999999999999999999932 234555556655666666667777888888888888
Q ss_pred HHhHHHHHHHHHHHHHH
Q 002808 637 CEGLQETIGFLKQQLND 653 (878)
Q Consensus 637 ~~~lqeel~~Lk~ql~~ 653 (878)
+.++.+++.+.|+++..
T Consensus 303 L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 303 LAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88898999999988755
No 136
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.70 E-value=0.45 Score=53.69 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 123 HVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 123 eVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++. .+...|+.+-.+. ..|+-||++|+||||.+.
T Consensus 167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 3444 3455777776555 669999999999999875
No 137
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.58 E-value=0.74 Score=42.66 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=20.2
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+...+.......|+-+|++|+|||+.+.
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 33343333345568899999999998874
No 138
>PRK01156 chromosome segregation protein; Provisional
Probab=84.01 E-value=1.4e+02 Score=38.25 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 002808 560 EIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 560 e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
++..++.++...+.+|..++..+
T Consensus 191 ~l~~~e~eL~~~~~~i~el~~~~ 213 (895)
T PRK01156 191 KLKSSNLELENIKKQIADDEKSH 213 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544
No 139
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.91 E-value=0.87 Score=47.76 Aligned_cols=48 Identities=13% Similarity=0.316 Sum_probs=30.9
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||.+++.. ...++. .++.++.. .+.+..|+-||++|+||||.+.
T Consensus 13 ~~~~~d~f~~~~--~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC--cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 458999988332 223333 33344331 2345678999999999999975
No 140
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=83.91 E-value=0.71 Score=45.43 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHhhcC-CCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDG-INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~G-yN~tIfAYGqTGSGKTyTM~ 159 (878)
.+++.+-.+ .+..++..|+||||||++|.
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 333433333 35667778899999999997
No 141
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.69 E-value=0.67 Score=53.72 Aligned_cols=51 Identities=25% Similarity=0.454 Sum_probs=31.9
Q ss_pred ceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 106 SIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 106 ~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
...|+||...... ++.-.|.. ...|...-.+.--.||-||++|+||||-|.
T Consensus 81 ~~~ytFdnFv~g~-~N~~A~aa--~~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGP-SNRLAYAA--AKAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCC-chHHHHHH--HHHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 3469999766443 33344431 222222233334568899999999999997
No 142
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.69 E-value=1.1e+02 Score=37.09 Aligned_cols=127 Identities=24% Similarity=0.370 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHhhhHHHHHhh------------------hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHH
Q 002808 516 TIDQIDLLREQQKILAGEVALH------------------SSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIAL 577 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~------------------ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~ 577 (878)
|.|.+.-|-.|=.-|.-+|+.- ...+.++.+++...+ .+++.+|.+|++|+++.+.+...
T Consensus 54 YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~r--a~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 54 YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARER--AKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555555555555555543 334555555544333 44666888888888877665554
Q ss_pred HHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 578 LEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 578 Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
.++.... +..++ .....-+++.--|+..-.+++..|.|++.....++..|..+|+.++.||.+..-.
T Consensus 132 ~~k~~~~------~re~~-------~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 132 AEKERRG------AREKL-------DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHhh------hHHHH-------HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4443311 11122 2233345555556667789999999999999999999999999999999775543
No 143
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.55 E-value=22 Score=37.73 Aligned_cols=46 Identities=30% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002808 605 LAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQ 650 (878)
Q Consensus 605 L~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~q 650 (878)
|-.|+.+-.-+++.+......|++.+..|..++...+.+++..+..
T Consensus 36 Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 36 LRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 3445555555677777788888999999999999888888776655
No 144
>PF13514 AAA_27: AAA domain
Probab=83.44 E-value=1.6e+02 Score=38.73 Aligned_cols=121 Identities=26% Similarity=0.313 Sum_probs=62.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhH-
Q 002808 618 VKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDS- 696 (878)
Q Consensus 618 ~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 696 (878)
........+++++.....++..++.++..++.++..++...... ..+++
T Consensus 798 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~------------------------------~~e~l~ 847 (1111)
T PF13514_consen 798 EAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVE------------------------------DEEELR 847 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------------------------------CHHHHH
Confidence 33344555666666666677777777777777776665532110 01111
Q ss_pred HHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhh----hHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 697 RLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGL----ASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 697 ~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~l----asaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
....+..+...|+.+...+ ..+|.....-+ ....+..++ ......+|..|..++..|..+...|..+++.++
T Consensus 848 ~~~~~~~~~~~l~~~~~~~---~~~l~~~~~~~-~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~ 923 (1111)
T PF13514_consen 848 EAEERAEERRELREELEDL---ERQLERQADGL-DLEELEEELEELDPDELEAELEELEEELEELEEELEELQEERAELE 923 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhcCcc-cHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344555555544333 33343322222 122233333 233445667777777777777777776666555
No 145
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.38 E-value=30 Score=39.12 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 596 SEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
.|+-++-++|+.+ ..+++.+..+...+++||+.+...+++..++.+.++.++++|-.
T Consensus 204 ~eL~~lk~~l~~~----~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 204 TELDRAKEKLKKL----LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443444444 45788888999999999999999999999999999999887543
No 146
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=83.36 E-value=0.95 Score=54.60 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+..++..-+|.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556677778999999999999999985
No 147
>PRK08939 primosomal protein DnaI; Reviewed
Probab=83.31 E-value=0.75 Score=51.37 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=33.1
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcC-CCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG-INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~G-yN~tIfAYGqTGSGKTyTM~ 159 (878)
.+||.+-.....+..++.. +...++....| ....|+-||++|+||||-+.
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 4565543333356667763 45666665543 23468999999999999986
No 148
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.29 E-value=52 Score=42.19 Aligned_cols=91 Identities=23% Similarity=0.185 Sum_probs=65.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHH
Q 002808 562 KKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQ 641 (878)
Q Consensus 562 ~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lq 641 (878)
..+..+..+.+.||+.|-+.|-++.. +..-..--+.+|-.||-++.-.+|.+..-...|.+.+-..-.++.-|.
T Consensus 477 ~Q~~~et~el~~~iknlnk~L~~r~~------elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 477 DQLEAETEELLNQIKNLNKSLNNRDL------ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455556666667777666643322 233344445888899998888888888888888888888888888888
Q ss_pred HHHHHHHH--HHHHHHhhc
Q 002808 642 ETIGFLKQ--QLNDALELR 658 (878)
Q Consensus 642 eel~~Lk~--ql~~~~~~~ 658 (878)
..|+.|+. |=..+|+..
T Consensus 551 kqI~~Lk~t~qn~~~LEq~ 569 (1195)
T KOG4643|consen 551 KQIQSLKTTSQNGALLEQN 569 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHh
Confidence 88888888 766666654
No 149
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=82.96 E-value=60 Score=40.41 Aligned_cols=174 Identities=22% Similarity=0.196 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccc
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDN 595 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~ 595 (878)
+..++-.||+|+...++. .+|=+.+-...+..+.-+-.++..+...|..-+.+...++.+|...-+-... .
T Consensus 466 ~Qeqn~kL~~el~ekdd~------nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~---l 536 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDK------NFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERG---L 536 (698)
T ss_pred HHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccc
Q 002808 596 SEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKS 675 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~ 675 (878)
....+.++.-.+.|-++.-..--++.|....-+.|+ .+....+.++.+++.++.+
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq---~~~ek~~~~le~i~~~~~e---------------------- 591 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQ---IELEKSEAKLEQIQEQYAE---------------------- 591 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------------------
Q ss_pred cccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHh
Q 002808 676 LNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKA 749 (878)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~ 749 (878)
-..|++.+++...+|-|+...|...-..+--+.+|+.+-. ..+.|||+
T Consensus 592 -------------------------~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~-~L~EElk~ 639 (698)
T KOG0978|consen 592 -------------------------LELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADE-VLAEELKE 639 (698)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccH-HHHHHHHH
No 150
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.81 E-value=54 Score=32.68 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGK 571 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k 571 (878)
...=|..+|.-|..-+.++.++-.+..++ .....|.++++..+.+|++.+..+
T Consensus 33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~---~~l~~d~~~l~~~~~rL~~~~~~~ 85 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDRDMEQREDLSDKL---RRLRSDIERLQNDVERLKEQLEEL 85 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888888776665555 222333344444444444444444
No 151
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.68 E-value=50 Score=37.26 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=30.8
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 613 SFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 613 s~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
..+++.+.++...++.+|+.+...+.++.+..+.++.++.++
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777663
No 152
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.02 E-value=47 Score=32.54 Aligned_cols=97 Identities=29% Similarity=0.417 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh---hHHHHHHHHHHhhhhhcccCcc
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGK---NDQIALLEKQIADSIMTSHNTM 593 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k---~~qi~~Le~~i~~s~~~~~~k~ 593 (878)
.--+..|--+++.+++|++.-..-+.+|..+ .+.+..||-+|-.++++. ..++..|++.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~------r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el----------- 77 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAE------RDELREEIVKLMEENEELRALKKEVEELEQEL----------- 77 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4457788899999999999877766666554 233445565555555443 22222222222
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.+|-.. ...+=+=|-+|..++.+|+.+|..+|+..-.
T Consensus 78 ---------~~l~~r--------------y~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 78 ---------EELQQR--------------YQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred ---------HHHHHH--------------HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2234444667778888888888887776543
No 153
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.88 E-value=32 Score=40.94 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhch----hhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcc
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQK----LSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPT 776 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~k----l~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~ 776 (878)
-..||.-|.++.+.|.-|----+.+-|- +.-|-.|+--=|+..--||..+..|...+|-+|.||-++|..++...-
T Consensus 171 ~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 171 LEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred hHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3556666666666654222111111111 123445666666667778899999999999999999999998875320
Q ss_pred cccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 002808 777 QRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEES 839 (878)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~ 839 (878)
....-.++|..=|++.+++..-|+|-|.|-+-+++|+-.-+.|+
T Consensus 251 -------------------~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 251 -------------------YLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred -------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11124678888899999999999999998888888888777776
No 154
>PRK10869 recombination and repair protein; Provisional
Probab=81.79 E-value=51 Score=40.05 Aligned_cols=48 Identities=27% Similarity=0.272 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRD 566 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~ 566 (878)
++..+.++.+....++.+-.--++.|.+-...-.+++.|+.+.++|..
T Consensus 172 ~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n 219 (553)
T PRK10869 172 DLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLAN 219 (553)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 344444444455555555555555555555566677777777776653
No 155
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.76 E-value=1.9e+02 Score=38.28 Aligned_cols=29 Identities=3% Similarity=0.173 Sum_probs=20.1
Q ss_pred HHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 744 AVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 744 avelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
+-+|...++++..|..||.+-.+.+..++
T Consensus 271 s~~L~~~t~~~n~l~~~~~~~~~~l~~~~ 299 (1109)
T PRK10929 271 SQALNQQAQRMDLIASQQRQAASQTLQVR 299 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777666665554
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.63 E-value=65 Score=40.45 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=58.4
Q ss_pred HHHHHHH----HhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccc
Q 002808 520 IDLLREQ----QKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDN 595 (878)
Q Consensus 520 ~dlL~eQ----lk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~ 595 (878)
...|||+ ++.-..||..+...|+..+++ ...++..++++++.-++.-..|..||.+.-.. -
T Consensus 545 ~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~---------Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~------Q 609 (717)
T PF10168_consen 545 TKVLREEYIEKQDLAREEIQRRVKLLKQQKEQ---------QLKELQELQEERKSLRESAEKLAERYEEAKDK------Q 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 4555555 233467788888888888776 33456666666666555556666666321111 0
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002808 596 SEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~ 652 (878)
..+.+-+.+++..++.+.- .-+..-+.+.++|..-...+..|+.-|.++|.++.
T Consensus 610 e~L~~R~~~vl~~l~~~~P---~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 610 EKLMKRVDRVLQLLNSQLP---VLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222334444433211 12222255555555555555556666666655553
No 157
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.46 E-value=48 Score=40.67 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=30.1
Q ss_pred HhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHH
Q 002808 715 LTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAE 767 (878)
Q Consensus 715 l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~e 767 (878)
|-+.....+...+++.+|---.+.-.-++..|++.-.+...+|..+.+++.++
T Consensus 431 lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 431 LKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33333333334445555555555555666667777777777776666666443
No 158
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=81.20 E-value=1.4 Score=52.34 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=23.4
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+..++..-++.|+-.|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555677777889999999999999995
No 159
>PRK11281 hypothetical protein; Provisional
Probab=81.11 E-value=44 Score=43.86 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=14.7
Q ss_pred HHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 744 AVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 744 avelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
+-+|..++..+..|..+|.+-.+.+..++
T Consensus 291 s~~L~~~t~~~~~l~~~~~~~~~~l~~~~ 319 (1113)
T PRK11281 291 SQRLLKATEKLNTLTQQNLRVKNWLDRLT 319 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544443
No 160
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.10 E-value=20 Score=43.18 Aligned_cols=103 Identities=26% Similarity=0.349 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhh----------------hhhhhhhhHH-------------HHHHHHhhHH
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEE----------------SSYAKGLASA-------------AAVELKALSE 752 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee----------------~~yak~lasa-------------aavelk~l~~ 752 (878)
-.||-.|.-++...+|-=..||.+|.+|.-+ +-|=.||+.| +-+|++.|.+
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5688889999999999999999999999654 2355556554 2356777777
Q ss_pred HHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 002808 753 EVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALL 823 (878)
Q Consensus 753 evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ 823 (878)
||..|....++..+++..+++.. .+....+.++..|++--+-|=+.||.-+.
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~-------------------~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKL-------------------DDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH-------------------HHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777766666555322 12333456677777777777666665543
No 161
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.01 E-value=2.1e+02 Score=38.23 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=13.5
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
|-+-.+|-.|+|||+.|
T Consensus 18 G~t~i~GTNG~GKTTlL 34 (1201)
T PF12128_consen 18 GHTHICGTNGVGKTTLL 34 (1201)
T ss_pred CceeeecCCCCcHHHHH
Confidence 34455799999999988
No 162
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=80.85 E-value=1.4 Score=50.62 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=32.6
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-HhhcC----CCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG----INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G----yN~tIfAYGqTGSGKTyTM~ 159 (878)
.+.||.|.+-+..-+.+.+.+..|+.. ..+.. ....|+-||++|+|||+...
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHH
Confidence 355666665554445566655555554 22322 23458889999999999874
No 163
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.75 E-value=1e+02 Score=34.62 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHhhhHHHHHhh----hHHHHHHHHHHhcCCchHHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhhhhc
Q 002808 516 TIDQIDLLREQQKILAGEVALH----SSALKRLSEEAARNPQKEQLQVEIK---KLRDEIKGKNDQIALLEKQIADSIMT 588 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~----ss~lkrL~eqa~~~~~~e~iq~e~~---~l~~Ei~~k~~qi~~Le~~i~~s~~~ 588 (878)
+.++++-++++-|.+.++|... ..+-.+|.+. +.++..+-...+ .....++..+.-|.-||..+.-++-+
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL---~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~ 129 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQEL---RKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLT 129 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3566666666666666666554 2222222221 111111111111 22233444455555566655443333
Q ss_pred ccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 589 SHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 589 ~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
...-.++.|-+.+|...|.-.-..++. +.....|..++.....+..++.++|+.|-+|.+.
T Consensus 130 ---~e~E~~lvq~I~~L~k~le~~~k~~e~-~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 130 ---PEEERELVQKIKELRKELEDAKKALEE-NEKLKELKAEIDELKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557888888877776533322222 3444555566666667777777777776666543
No 164
>PRK11281 hypothetical protein; Provisional
Probab=80.61 E-value=91 Score=41.11 Aligned_cols=137 Identities=14% Similarity=0.204 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh-------cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhc-
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAA-------RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT- 588 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~-------~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~- 588 (878)
..+.+.|.+++.....++.....-|++|++... ..-.-.+++..+..+++++++.+.+...+..++......
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~P 158 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQP 158 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 445677777777777788777777888876411 111124477777777777777777777776555443321
Q ss_pred ccCcccchhhhHHHHHHHHHhhhh-----------------------------hhhhHHHHhhhHHHHHHHHHHHHHHHh
Q 002808 589 SHNTMDNSEVSQSFAELAAQLNEK-----------------------------SFELEVKAADNRIIQEQLNQKICECEG 639 (878)
Q Consensus 589 ~~~k~~~~ev~qal~eL~~q~~eK-----------------------------s~elE~ksadN~~lqEqL~~K~~e~~~ 639 (878)
+.+-....+..+.+.++..+++.- -+++..-+.=...++.|..-...+...
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 111112233333333333333220 011222222234455566666777778
Q ss_pred HHHHHHHHHHHHHH
Q 002808 640 LQETIGFLKQQLND 653 (878)
Q Consensus 640 lqeel~~Lk~ql~~ 653 (878)
+|..++.|+++++.
T Consensus 239 ~~~~~~~lq~~in~ 252 (1113)
T PRK11281 239 LEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888765
No 165
>PRK10436 hypothetical protein; Provisional
Probab=80.52 E-value=0.97 Score=53.33 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=23.3
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+..++..-+|.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666778999999999999999995
No 166
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.23 E-value=1.8e+02 Score=36.92 Aligned_cols=46 Identities=30% Similarity=0.343 Sum_probs=36.2
Q ss_pred HhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 608 QLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 608 q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
-+-||--++++ -|.+|.++|.+|.+-..++|+++.-|||--..|..
T Consensus 267 ~ieE~m~qlk~---kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~g 312 (1265)
T KOG0976|consen 267 EIEEKMRQLKA---KNSVLGDELSQKEELVKELQEELDTLKQTRTRADG 312 (1265)
T ss_pred HHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444445544 47899999999999999999999999998776554
No 167
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=80.08 E-value=4.9 Score=43.55 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=33.4
Q ss_pred EecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC
Q 002808 208 VVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES 277 (878)
Q Consensus 208 ~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr 277 (878)
.+.+++++...+...... ..+. + ..-|.-++.|.|.... .-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~-----------~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPH-----------VLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCC-----------CCceEEEeCCCccc
Confidence 446788888888765432 2111 1 2345668888887332 13589999999863
No 168
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.71 E-value=0.75 Score=42.11 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=14.3
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
++.+|+||+|||+++.
T Consensus 3 ~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 3 VLLAAPTGSGKTLAAL 18 (144)
T ss_pred EEEECCCCCchhHHHH
Confidence 5779999999999986
No 169
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=79.45 E-value=0.59 Score=57.82 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICE 636 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e 636 (878)
++.+++.|++.+..--+++..||..+..+-.. +..+-..-+-+.+|-..+++...+.+...-+|..|+|++.....+
T Consensus 330 lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~---~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~e 406 (713)
T PF05622_consen 330 LKRQVKELEEDNAVLLETKAMLEEELKKARAL---KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEE 406 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666556666666655322111 111111111223333333333333333345667777777766666
Q ss_pred HHhHHHHHHHHHHHHH
Q 002808 637 CEGLQETIGFLKQQLN 652 (878)
Q Consensus 637 ~~~lqeel~~Lk~ql~ 652 (878)
...+..+...|++.+.
T Consensus 407 ke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 407 KERLQEERDSLRETNE 422 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777766543
No 170
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.20 E-value=2.1 Score=48.58 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=31.1
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHH-hhc--CC--CcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSG-AMD--GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~-vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
.+.||.+.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||++..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3556666655444455555554444432 221 21 3458899999999999885
No 171
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.16 E-value=23 Score=34.74 Aligned_cols=64 Identities=31% Similarity=0.368 Sum_probs=52.5
Q ss_pred HhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002808 748 KALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQ 827 (878)
Q Consensus 748 k~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~ 827 (878)
+.|++||.+||..|+.+.+... .+..|+.++..-..|..++=.+|-||.-
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~------------------------------~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKK------------------------------EVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4567899999999998855433 4567899999888998777788999999
Q ss_pred HHHHHHHHHHHhhh
Q 002808 828 QEAELQRKVEESKK 841 (878)
Q Consensus 828 ~e~el~~~~~e~k~ 841 (878)
.-+||+-.|.+-|.
T Consensus 97 ~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 97 EVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
No 172
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.01 E-value=1.6 Score=49.96 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=18.8
Q ss_pred Hhhc-CCCcceeeecccCCCCccccc
Q 002808 135 GAMD-GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 135 ~vl~-GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++. |-...++.||.||+|||.|+.
T Consensus 35 ~~~~~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 35 PALRGERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred HHhcCCCCccEEEECCCCCCHhHHHH
Confidence 3443 334449999999999999985
No 173
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.72 E-value=55 Score=36.97 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=29.1
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
+..+-+.|.++-..+..+-.+++....+...+++++...+.+..+++.+|..++..+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555555555555555555555555554
No 174
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.59 E-value=1.8e+02 Score=36.08 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhh-------hcccCcccchhhhHHHHHHHHHhhhhhhhh----HHHHhhhHHH
Q 002808 558 QVEIKKLRDEIKGKNDQIALLEKQIADSI-------MTSHNTMDNSEVSQSFAELAAQLNEKSFEL----EVKAADNRII 626 (878)
Q Consensus 558 q~e~~~l~~Ei~~k~~qi~~Le~~i~~s~-------~~~~~k~~~~ev~qal~eL~~q~~eKs~el----E~ksadN~~l 626 (878)
-.++..|..|.+..-.+|..||..|.+.- ... .....+++-+.|..-+.+|....-.| +....+|..|
T Consensus 35 seev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~-~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~L 113 (617)
T PF15070_consen 35 SEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE-PPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQL 113 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555554422 111 12345566666655555554433333 2344677777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 627 QEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 627 qEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
..-..++...+.++++++..++++..+..
T Consensus 114 s~L~~EqEerL~ELE~~le~~~e~~~D~~ 142 (617)
T PF15070_consen 114 SRLNQEQEERLAELEEELERLQEQQEDRQ 142 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76667788888899999999988876543
No 175
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.53 E-value=57 Score=40.78 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhh
Q 002808 558 QVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFE 615 (878)
Q Consensus 558 q~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~e 615 (878)
....+.|+.|++..+.+++.|+.+|.|- ..++.-.-+.++++..|++-..-|
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dv------r~~~tt~kt~ie~~~~q~e~~ise 487 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDV------RVDITTQKTEIEEVTKQRELMISE 487 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh------eeccchHHHHHHHhhhHHHHHHHH
Confidence 3456677888888888888888888642 223444555667777776533333
No 176
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.44 E-value=8.8 Score=40.05 Aligned_cols=58 Identities=29% Similarity=0.250 Sum_probs=13.0
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
|+.++...-.+++.++.....+++.+-+........|.....++..|+.++..|...|
T Consensus 82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555554444444444444444455555555555555544
No 177
>PRK06921 hypothetical protein; Provisional
Probab=78.28 E-value=1.6 Score=47.84 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhc---CCCcceeeecccCCCCccccc
Q 002808 124 VYDIAAQHVVSGAMD---GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 124 VY~~~~~plV~~vl~---GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+|. .+...++.+-. +....|+-||++|+||||.+.
T Consensus 98 ~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 98 AYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 443 34455655432 234568889999999999986
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=77.66 E-value=1.5 Score=51.38 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=32.5
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHh--hcC--CCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGA--MDG--INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~v--l~G--yN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+||..+.. .++...|. .+..+.... ..| ||. +|-||++|+||||.+.
T Consensus 106 ~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 106 PLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred ccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 46999987753 34555554 444444332 223 443 6789999999999986
No 179
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.58 E-value=46 Score=36.34 Aligned_cols=54 Identities=30% Similarity=0.345 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHH
Q 002808 801 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMW 854 (878)
Q Consensus 801 ~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw 854 (878)
..+|..|+..-++|.++||.-|.+-.-+.++|++.++..+-+=..+|++|+---
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999888888886543
No 180
>PF13245 AAA_19: Part of AAA domain
Probab=77.40 E-value=1.2 Score=39.57 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|..++. -+..++-.|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 23334448999999999985
No 181
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.33 E-value=88 Score=34.81 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhh-------hhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESS-------YAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 769 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~-------yak~lasaaavelk~l~~evtkl~~~n~~l~~el~ 769 (878)
-.|+--||.+.-.|.|.=+-|+..++||.-|.- |--|.-+++---|..|..|+.++-.+=+|.-....
T Consensus 59 k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 59 KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777999999999999999999999998853 33444444455666666666666655555544444
No 182
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.29 E-value=72 Score=38.67 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRD 566 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~ 566 (878)
++..+.++.+....++.+-..-++.|.+-...-.+++.|+.+.++|..
T Consensus 176 ~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n 223 (563)
T TIGR00634 176 QLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSN 223 (563)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhC
Confidence 445555555555566666555566665555566667777777776653
No 183
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.02 E-value=8.8 Score=34.28 Aligned_cols=32 Identities=41% Similarity=0.524 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEES 733 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~ 733 (878)
.-||++||.+...|.+++..|...|++|-+|-
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888888888664
No 184
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=76.98 E-value=0.8 Score=43.09 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.1
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
..+++.||++|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3678999999999999985
No 185
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=76.77 E-value=1.4e+02 Score=33.75 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=58.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHH
Q 002808 562 KKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQ 641 (878)
Q Consensus 562 ~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lq 641 (878)
++.-.+|+..|+....|++-| |.. -.+|++-+.||+. +|-+-.++|-.|.-+|....-...-|+
T Consensus 27 ~ky~ediei~Kekn~~Lqk~l---------KLn----eE~ltkTi~qy~~---QLn~L~aENt~L~SkLe~EKq~kerLE 90 (305)
T PF14915_consen 27 KKYLEDIEILKEKNDDLQKSL---------KLN----EETLTKTIFQYNG---QLNVLKAENTMLNSKLEKEKQNKERLE 90 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------hhh----HHHHHHHHHHHhh---hHHHHHHHHHHHhHHHHHhHHHHHHHH
Confidence 355556666666666666655 211 1345566677774 455667899999999988878889999
Q ss_pred HHHHHHHHHHHHHHhh
Q 002808 642 ETIGFLKQQLNDALEL 657 (878)
Q Consensus 642 eel~~Lk~ql~~~~~~ 657 (878)
.+|.++...|+.|+..
T Consensus 91 tEiES~rsRLaaAi~d 106 (305)
T PF14915_consen 91 TEIESYRSRLAAAIQD 106 (305)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998874
No 186
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.42 E-value=1.8 Score=50.22 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=36.0
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-Hhhc--C--CCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--G--INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM~ 159 (878)
.++|+.|-+.+..-+++.+.+..|+.. .++. | ....|+-||++|+|||+...
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 467777777666556666666666654 3443 2 34568889999999999874
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.24 E-value=1 Score=41.06 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=15.8
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 457889999999999985
No 188
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.94 E-value=49 Score=38.97 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 627 QEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 627 qEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
.++-.++...+.++++.|.-|++||.+++
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34444555788889999999999998865
No 189
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=75.92 E-value=1.1e+02 Score=32.40 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=74.1
Q ss_pred HHhhhHHHHHhhhHHHHHHHHHHh--------cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchh
Q 002808 526 QQKILAGEVALHSSALKRLSEEAA--------RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSE 597 (878)
Q Consensus 526 Qlk~~~~Ei~~~ss~lkrL~eqa~--------~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~e 597 (878)
.-|.+++|+.---+.++.|-++.. ...+.-.|-.+|..|+.|+.-....+..|-+++.+...- +....-
T Consensus 61 ~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~---~~~Lq~ 137 (193)
T PF14662_consen 61 KAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATE---KATLQR 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh---hHHHHH
Confidence 334556777766677777766621 223333455667777777776666666666666544331 222222
Q ss_pred hhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 598 VSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 598 v~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
-+--++.|..|-| -.+..++.....|.--+.+-+.-..+|-.++.+|.+||++.
T Consensus 138 Ql~~~e~l~~~~d---a~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 138 QLCEFESLICQRD---AILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2223345544433 33445566666677667777777788888999999999774
No 190
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=75.76 E-value=13 Score=32.27 Aligned_cols=42 Identities=21% Similarity=0.372 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhh
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEV 598 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev 598 (878)
++.|+.||+.++...+.+|..+++++.+..=.+.+..+|.+-
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~ 43 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEK 43 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHH
Confidence 467899999999999999999999998766666676666554
No 191
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=75.62 E-value=1.5 Score=42.95 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=19.4
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..++.|.| ++..|+||+|||+...
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHH
Confidence 344556666 7889999999999975
No 192
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.38 E-value=4 Score=39.28 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhh
Q 002808 698 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEE 732 (878)
Q Consensus 698 ~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee 732 (878)
+..--.+++.||+.+.+|.|+|..|++.|++|-+-
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446799999999999999999999999998764
No 193
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.29 E-value=1.4e+02 Score=34.75 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHh
Q 002808 696 SRLQVQAAEIEELNRKVTELTEA 718 (878)
Q Consensus 696 ~~~~~q~~e~e~lk~~~~~l~e~ 718 (878)
.++-..+.||.=|||++.-|..+
T Consensus 512 VLLRVKEsEiQYLKqEissLkDE 534 (593)
T KOG4807|consen 512 VLLRVKESEIQYLKQEISSLKDE 534 (593)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 45667899999999998877543
No 194
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.15 E-value=2.6e+02 Score=36.11 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhHHHHHhhhHHH
Q 002808 518 DQIDLLREQQKILAGEVALHSSAL 541 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss~l 541 (878)
+..+.++.+++....++......+
T Consensus 167 ~~~e~~~~~l~e~~~~~~~~~e~l 190 (908)
T COG0419 167 EKYEKLSELLKEVIKEAKAKIEEL 190 (908)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544444443333
No 195
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.13 E-value=47 Score=33.35 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 555 EQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 555 e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
+.++.+++.+.+++..+.++|..|.+++
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999888
No 196
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=75.01 E-value=1.3e+02 Score=35.62 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh-cCCch--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSEEAA-RNPQK--------EQLQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~-~~~~~--------e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
=.+-|.+|++....++.....-|...+.+-. ..|+. ..++.++..++.++.+.+.+++.|++++.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666666666666666654421 22222 22334444445555555555555555553
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=74.82 E-value=1.6 Score=47.53 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=26.1
Q ss_pred eccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
||.-|.+..+...+..-..... +-.|.| |+-||++|+||||.+.
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 4555655555544443222112 224544 6679999999999985
No 198
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=74.68 E-value=1.6 Score=49.43 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..++.--.+.|+-.|+||||||.||.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 334443335778999999999999995
No 199
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=74.56 E-value=1.2 Score=46.27 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.7
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
+|.|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999985
No 200
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=74.05 E-value=1 Score=48.59 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=16.3
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
.+.|+-.|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 4667778999999999995
No 201
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=74.02 E-value=1.8 Score=49.79 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.4
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.|+-.|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999994
No 202
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.73 E-value=91 Score=35.21 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=25.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 616 LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 616 lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
+...+.++.++..+|......++.+++.+...+.+|++..+
T Consensus 129 ~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~ 169 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTE 169 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666665444
No 203
>PF12846 AAA_10: AAA-like domain
Probab=73.55 E-value=1.3 Score=47.32 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=16.5
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999999985
No 204
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.45 E-value=1.3e+02 Score=34.04 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.+..+.+++|++-.....++|..+.-+.++..+
T Consensus 141 ~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~ 173 (301)
T PF06120_consen 141 RELAVAQERLEQMQSKASETQATLNDLTEQRID 173 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666666666666666666666666653
No 205
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.31 E-value=2.6e+02 Score=35.39 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchh
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKL 729 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl 729 (878)
-..||..|+++..++.+-.-.|-...|+|
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 36777778777777766655555555544
No 206
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.20 E-value=36 Score=35.02 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.....++++.+.+......++++...+++++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 151 KELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666544
No 207
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.08 E-value=3.2e+02 Score=36.24 Aligned_cols=30 Identities=20% Similarity=0.095 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 002808 823 LEKDQQEAELQRKVEESKKREAYLENELAN 852 (878)
Q Consensus 823 ~ek~~~e~el~~~~~e~k~~e~~len~lan 852 (878)
.+|-++=.+|+.+.++-.++=.+++-|||.
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~ 1735 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAG 1735 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 344444455555555554544444445444
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.99 E-value=2.9 Score=45.52 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=30.1
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|.|..+-.....+..+|.. +..++..+-.|. .++-||++|+||||-..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa~ 123 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLAI 123 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHHH
Confidence 44443333344456677763 345555555333 45669999999999875
No 209
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.77 E-value=5.1 Score=38.38 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhh
Q 002808 699 QVQAAEIEELNRKVTELTEAKEQLELRNQKLSE 731 (878)
Q Consensus 699 ~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~e 731 (878)
..--.+|+.||..+.+|.|+|..|.+.|++|-+
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334679999999999999999999999999865
No 210
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.75 E-value=74 Score=34.51 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=38.6
Q ss_pred HHHHHHHhHHHhHhhhhhhhhhchhhh-hhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 705 IEELNRKVTELTEAKEQLELRNQKLSE-ESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 705 ~e~lk~~~~~l~e~~~~l~~~n~kl~e-e~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
+-+++.+..++.++++.|..+-..+.+ ...+...-......++..+.+.+.+|....+++..++...|
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKR 90 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777766666555 22222333333444555555666666666666665555444
No 211
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=72.70 E-value=1.9 Score=44.78 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.6
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|..++...+..++..|+.|+||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445565555566668999999999985
No 212
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=72.44 E-value=1.9 Score=49.20 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.0
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
-.+.|+-.|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46889999999999999985
No 213
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.41 E-value=2.3e+02 Score=34.31 Aligned_cols=43 Identities=33% Similarity=0.265 Sum_probs=31.6
Q ss_pred HHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHH
Q 002808 713 TELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVA 755 (878)
Q Consensus 713 ~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evt 755 (878)
.+.-+.-..|-..-|+|..|+--||.-|.++-.|+..+-.|+-
T Consensus 361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e 403 (522)
T PF05701_consen 361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAE 403 (522)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445567777888888888888888888888877777764
No 214
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=72.34 E-value=4.3 Score=47.75 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=48.3
Q ss_pred EEEEecCCCChhh-hccCCeEEEecCCCEEEeCCCCC------------ceeEEeccccCCCCcchhHHHHHHHHHHHHh
Q 002808 70 TVTVRFRPLSPRE-IRQGEEIAWYADGETILRNEDNP------------SIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (878)
Q Consensus 70 kV~VRVRPl~~~E-~~~g~~~~~~~d~~~i~~~~~~~------------~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (878)
..+|++.++...+ +..|..+.+......++..-+.. .-.-+|+.|.+-+..-+.+.+.+..|+...-
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 5778888877665 45566666655433332211100 0013445554443334455555545554322
Q ss_pred -hc--CC--CcceeeecccCCCCccccc
Q 002808 137 -MD--GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 137 -l~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
+. |. ...|+-||++|+|||++..
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 22 21 2247789999999999975
No 215
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.28 E-value=2.3e+02 Score=34.20 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=33.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHhhcCCCCCCCC
Q 002808 818 YEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLKKSHGADTDGS 871 (878)
Q Consensus 818 ~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvaklkk~~~~~~~~~ 871 (878)
++..-.|-.+.+.|+.+.-...--|-.+-|+|+.-||.-|+..- ......|++
T Consensus 339 ~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~-~~s~~~elE 391 (511)
T PF09787_consen 339 LRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA-SSSSWNELE 391 (511)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-ccCCcHhHH
Confidence 33333444445566655555555566677999999999998865 333444554
No 216
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.26 E-value=1.6e+02 Score=36.05 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRD 566 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~ 566 (878)
++..+.++.+....++.+-.--++.|.+-.....++++++.+.++|..
T Consensus 172 ~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn 219 (557)
T COG0497 172 ELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSN 219 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhh
Confidence 444444444444444444344444444445567778888877777653
No 217
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=71.85 E-value=1.2e+02 Score=33.60 Aligned_cols=138 Identities=19% Similarity=0.212 Sum_probs=73.2
Q ss_pred CCchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhH----HHHHHHHHH---hhhh
Q 002808 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKND----QIALLEKQI---ADSI 586 (878)
Q Consensus 514 ~~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~----qi~~Le~~i---~~s~ 586 (878)
.+...++.-|..||+.++..|....--|-=|+-- .+.+|.--.++|..|...|+..++ .+..|+.-+ ..++
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY--kD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l 154 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY--KDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASL 154 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688899999999988887653333333222 122333223344444444443322 111111111 1111
Q ss_pred hcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 587 MTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 587 ~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
..-. .....+++.++.+-+-.-.+.+ +=.++.+|..++-++-.-..++.+|.++|..|+.....+..
T Consensus 155 ~~~~-q~k~~~il~~~~~k~~~~~~~~--l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 155 SRKI-QEKKEEILSSAAEKTQSPMQPA--LLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 1222344444433333222221 22455899999999998889999999999999988766543
No 218
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=71.77 E-value=1.5e+02 Score=33.05 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hcccCcc---cchhhhHHHHHHHHHhhh----hhhhhHHHHhhhHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSI-MTSHNTM---DNSEVSQSFAELAAQLNE----KSFELEVKAADNRIIQE 628 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~-~~~~~k~---~~~ev~qal~eL~~q~~e----Ks~elE~ksadN~~lqE 628 (878)
|+.++.+|..|.+.+.-||.+||.-+---- .....|. .++-=.|.|.|...+|.. =+.|+-+|....-.|.-
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg 102 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG 102 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 444555666666666666665554321000 0000011 111122334444444432 24577788888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCC----cchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHH
Q 002808 629 QLNQKICECEGLQETIGFLKQQLNDALELRNFSP----LASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAE 704 (878)
Q Consensus 629 qL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e 704 (878)
||+.-...+..|+.+|.+||..|...-....... .-+..|+....|-.+ ..--+...
T Consensus 103 Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp-------------------~q~~~~sk 163 (307)
T PF10481_consen 103 QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTP-------------------SQYYSDSK 163 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCCh-------------------hhhhhhhh
Confidence 9988888889999999999999865443332111 111122222222111 00123567
Q ss_pred HHHHHHHhHHHhHhhhhhh
Q 002808 705 IEELNRKVTELTEAKEQLE 723 (878)
Q Consensus 705 ~e~lk~~~~~l~e~~~~l~ 723 (878)
.|+|+-+...=.|+.-.||
T Consensus 164 ~e~L~ekynkeveerkrle 182 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLE 182 (307)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 8888888777777766665
No 219
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=71.64 E-value=3.7 Score=50.63 Aligned_cols=66 Identities=30% Similarity=0.422 Sum_probs=45.8
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc-----------------------------
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------------------- 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~----------------------------- 159 (878)
|....=|.|.-.|...|.. ++..+-.|.... ..+|.|||||||||-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4555668888889887775 445555554222 378999999999984
Q ss_pred -CCCceeEEEEEeeeeeccee
Q 002808 160 -TPNREFLLRVSYLEIYNEVV 179 (878)
Q Consensus 160 -g~~~ef~V~vS~lEIYnE~I 179 (878)
-|+......||||.-|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 23344667889999886543
No 220
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.16 E-value=52 Score=42.51 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchh-hhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHH
Q 002808 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSE-VSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQK 633 (878)
Q Consensus 560 e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~e-v~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K 633 (878)
|.+.....|++.+++|..++++|.+..+.-..-.+... +-.-+..+-.++..+..+++....++..++.+|..+
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667677766543332111111111 112234444455555555555555555555554443
No 221
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=71.10 E-value=1.7 Score=45.58 Aligned_cols=16 Identities=44% Similarity=0.727 Sum_probs=13.4
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
+.-+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4457999999999984
No 222
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.78 E-value=70 Score=31.85 Aligned_cols=53 Identities=21% Similarity=0.405 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
......|-.++..+..|+......++||+++ +..+++++...+.+.+.|+..+
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~-------------~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQ-------------LEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777777776554 4455555555555555555554
No 223
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=70.75 E-value=2.4 Score=46.26 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=20.9
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..++..-.+.|+-.|+||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 344555556778889999999999985
No 224
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=70.62 E-value=2.2 Score=46.51 Aligned_cols=129 Identities=16% Similarity=0.239 Sum_probs=73.1
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcc-eeeecccCCCCcccccCCCceeE-EEEEeeeeecceeeecCCC
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT-IFAYGVTSSGKTHTMHTPNREFL-LRVSYLEIYNEVVNDLLNP 185 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t-IfAYGqTGSGKTyTM~g~~~ef~-V~vS~lEIYnE~I~DLL~p 185 (878)
...+|...+-+...+.+.+.+ ..++.|..+- ++-||..|+|||.++..--..|. -.+-.+||..+.+.||-.-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPEL 97 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHH
Confidence 456777777666666666554 5677776543 66799999999999851111000 0166799998887666421
Q ss_pred CCCCcceeecCCC--eEecccEEEEe-cCHHHHHHHHHHhhhccccccccCCCCCCCceEEEE
Q 002808 186 AGQNLRIREDSQG--TFVEGVKEEVV-LSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFT 245 (878)
Q Consensus 186 ~~~~L~Ired~~G--~~V~gLse~~V-~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~Ift 245 (878)
-. .++..+.. +|+.+|+-..- .++..+..+|+-|...| ....-+...|.|-|.|-.
T Consensus 98 ~~---~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 98 LD---LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLVPE 156 (249)
T ss_pred HH---HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhccch
Confidence 00 01111112 35556552222 23455666776666554 344445666777777643
No 225
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.56 E-value=20 Score=37.58 Aligned_cols=65 Identities=29% Similarity=0.348 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhh-hhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002808 705 IEELNRKVTELTEAKEQLELRNQKLSEESSYAKG-LASAAAVELKALSEEVAKLMNHKERLTAELA 769 (878)
Q Consensus 705 ~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~-lasaaavelk~l~~evtkl~~~n~~l~~el~ 769 (878)
..+|..+..+|.+++..|+.+-+.|.....+++. .+-.-+.+-|...+||..|-.+|..|.++|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555444444333 3334577889999999999999999998875
No 226
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.04 E-value=2.6e+02 Score=33.99 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhccc
Q 002808 551 NPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH 590 (878)
Q Consensus 551 ~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~ 590 (878)
+..+.+++.++..++.+.++..+++..|+.+|.+.-....
T Consensus 167 ~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l 206 (563)
T TIGR00634 167 YQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADL 206 (563)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCc
Confidence 4444445555666666656666666666666655554444
No 227
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=70.00 E-value=2.3 Score=43.44 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 444454456778899999999999999985
No 228
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.96 E-value=55 Score=36.96 Aligned_cols=32 Identities=25% Similarity=0.081 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
..-.+.+...-+..+++++...++.|+..+..
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555443
No 229
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.79 E-value=3 Score=46.02 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++++++.--.-|.|+-.|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4667778777788899999999999999984
No 230
>PLN03188 kinesin-12 family protein; Provisional
Probab=69.75 E-value=3.9e+02 Score=35.83 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHhhc
Q 002808 622 DNRIIQEQLNQK-----ICECEGLQETIGFLKQQLNDALELR 658 (878)
Q Consensus 622 dN~~lqEqL~~K-----~~e~~~lqeel~~Lk~ql~~~~~~~ 658 (878)
|...+||++..- ..|-+-|+++|+.||.||.-.+...
T Consensus 968 e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s 1009 (1320)
T PLN03188 968 ELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSS 1009 (1320)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccc
Confidence 566788888751 2456678899999999998765543
No 231
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.73 E-value=54 Score=34.36 Aligned_cols=75 Identities=21% Similarity=0.249 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhH----------HHHhhhHHHHHHHHHHHHHHHhHHHH
Q 002808 574 QIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELE----------VKAADNRIIQEQLNQKICECEGLQET 643 (878)
Q Consensus 574 qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE----------~ksadN~~lqEqL~~K~~e~~~lqee 643 (878)
+++.||+-+.-.-... -+.|+|++|+|-. +-.=.+| -.+..-..++.++.....++..++..
T Consensus 13 ~lKELEK~~pK~~gI~--~~~VKdvlq~LvD------DglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~ 84 (188)
T PF03962_consen 13 TLKELEKLAPKEKGIV--SMSVKDVLQSLVD------DGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKK 84 (188)
T ss_pred cHHHHHHHcccccCCc--hhhHHHHHHHHhc------cccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999887633322 3589999999732 1122223 12355667788888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 002808 644 IGFLKQQLNDALE 656 (878)
Q Consensus 644 l~~Lk~ql~~~~~ 656 (878)
+..|+..|..+-.
T Consensus 85 i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 85 IEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877533
No 232
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.64 E-value=77 Score=35.89 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHH
Q 002808 602 FAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGL----QETIGFLKQQLND 653 (878)
Q Consensus 602 l~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~l----qeel~~Lk~ql~~ 653 (878)
++++-.++.+....++.....-..+++++++-...+.+- -.|+..|+.++..
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443322111 1356666666544
No 233
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.62 E-value=2.7 Score=43.23 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.3
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
-.|+-||++|+||||...
T Consensus 48 ~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp -EEEEEESTTSSHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHH
Confidence 458889999999999975
No 234
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=69.55 E-value=55 Score=34.68 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCccc
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAAR--NPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMD 594 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~--~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~ 594 (878)
.-|.+.|+.||..|+.+|..-. +.+.. .+.+++.-.==.-+++.++=|++|++.|+. .......+
T Consensus 95 dwEevrLkrELa~Le~~l~~~~-------~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~------~~~~~~~~ 161 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVE-------QAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE------GRSKSGKN 161 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-------HHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc------cCCCCCCC
Confidence 3378999999999998887433 23333 122221111112245556677777777765 11222223
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQ 649 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ 649 (878)
++. ...|...+.+|.+...+.+..-+.+|+.|+|
T Consensus 162 l~~---------------------v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 162 LKS---------------------VREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333 3345555666666666666666666666653
No 235
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.16 E-value=55 Score=40.55 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=41.0
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHH---------------HHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQK---------------ICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K---------------~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
..-+...++.|..|||++-.|.=..-.+.+.|-++|... ..++.+|+..|..|+++-..-++.
T Consensus 105 l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlek 182 (660)
T KOG4302|consen 105 LESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEK 182 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666778899999988877765555555555555554 145666677777777666555543
No 236
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=68.89 E-value=3.9 Score=45.99 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcCCC-cceeeecccCCCCccccc
Q 002808 124 VYDIAAQHVVSGAMDGIN-GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 124 VY~~~~~plV~~vl~GyN-~tIfAYGqTGSGKTyTM~ 159 (878)
+++..+..++...+.|-+ --.+-||+.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 344444455555555533 345679999999999974
No 237
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.77 E-value=24 Score=33.88 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=45.5
Q ss_pred ccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 593 MDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 593 ~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
|+.+++...|.+|-.|+. .-.++...|+.++.+...|+..|+-|.++|++.|.....
T Consensus 1 Mdk~~l~~~l~~le~~l~-------~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 1 MDKKELFDRLDQLEQQLG-------QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred CchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677777777777755 444556779999999999999999999999999988654
No 238
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=68.61 E-value=3 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=18.3
Q ss_pred hcCCCcceeeecccCCCCccccc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+....+.++-+|++|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445678889999999999985
No 239
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=68.48 E-value=3.9 Score=47.21 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=40.6
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhc----CCCcceeeecccCCCCccccc
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD----GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~----GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..+.||.+.+.-.--..+.+.++..+++.++. -.--.|.-||++|+|||+...
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAr 166 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCE 166 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHH
Confidence 35788888777666778888888888888874 223346779999999999853
No 240
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=68.25 E-value=1.5e+02 Score=30.42 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=56.5
Q ss_pred cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHH
Q 002808 550 RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQ 629 (878)
Q Consensus 550 ~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEq 629 (878)
.--|++++|.|...+...|+++...+..|-..+ ...+|+| .++-+|... ...++..+..+
T Consensus 40 ~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~-------------~~~v~~L----~h~keKl~~---~~~~~~~l~~~ 99 (177)
T PF13870_consen 40 HLIDFEQLKIENQQLNEKIEERNKELLKLKKKI-------------GKTVQIL----THVKEKLHF---LSEELERLKQE 99 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH----HHHHHHHHH---HHHHHHHHHHH
Confidence 456899999999999999999988777776665 2333433 344444433 34556666666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 630 LNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 630 L~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
|..+...+..+.+++..++.+...+
T Consensus 100 l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 100 LKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665443
No 241
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.90 E-value=3.1e+02 Score=34.95 Aligned_cols=191 Identities=25% Similarity=0.269 Sum_probs=94.6
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHH-HhhhH
Q 002808 546 EEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVK-AADNR 624 (878)
Q Consensus 546 eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~k-sadN~ 624 (878)
|+|.. -.|+.+.|+-.|+.+++..-.|=..+|.|+.+.-.+ ++|.++-|--.-.--.||..|.=.| +.+..
T Consensus 13 eeav~--gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~a------Lkec~~qlr~~ree~eq~i~~~~~~~s~e~e 84 (769)
T PF05911_consen 13 EEAVS--GWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGA------LKECMRQLRQVREEQEQKIHEAVAKKSKEWE 84 (769)
T ss_pred HHHHh--hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHH------HHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Confidence 34444 456788899999999999999999999999664433 5666655433333333344333222 23333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhH--HHHHHH
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDS--RLQVQA 702 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~ 702 (878)
.++- +|+..|..+..+|..+--.+.....+.. .+ .. ......-.+..+.. -...+ .+..-+
T Consensus 85 ~~~~----------~le~~l~e~~~~l~~~~~e~~~l~~~l~-~~---~~-~i~~l~~~~~~~e~--~~~~l~~~l~~~e 147 (769)
T PF05911_consen 85 KIKS----------ELEAKLAELSKRLAESAAENSALSKALQ-EK---EK-LIAELSEEKSQAEA--EIEDLMARLESTE 147 (769)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHhhhHHHHHHHH-HH---HH-HHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 3332 3333344444444221110000000000 00 00 00000000111100 01111 233446
Q ss_pred HHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCc
Q 002808 703 AEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSP 775 (878)
Q Consensus 703 ~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~ 775 (878)
-|+--||+++.-|.+ .|++|| +|-=|-..-|=+| =|-..|=|.|+ +||.+|---.|...
T Consensus 148 ken~~Lkye~~~~~k---eleir~----~E~~~~~~~ae~a---~kqhle~vkki----akLEaEC~rLr~l~ 206 (769)
T PF05911_consen 148 KENSSLKYELHVLSK---ELEIRN----EEREYSRRAAEAA---SKQHLESVKKI----AKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHHHHHH---HHHHHH----HHHHHhHHHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 677788888887765 488887 4555555433333 36677777776 67888855555444
No 242
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=67.78 E-value=2.3e+02 Score=37.56 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHhhhhhhHHHHHHhhcC
Q 002808 752 EEVAKLMNHKERLTAELAAAKS 773 (878)
Q Consensus 752 ~evtkl~~~n~~l~~el~~~~~ 773 (878)
.-+.++...|.+|+.+|..+-.
T Consensus 258 ~~i~~~~~~N~~Ls~~L~~~t~ 279 (1109)
T PRK10929 258 KSIVAQFKINRELSQALNQQAQ 279 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888889999998876654
No 243
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.37 E-value=2.4e+02 Score=33.38 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh---------cCCchHHHHHHHHHHHHHHh--------------hhh
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAA---------RNPQKEQLQVEIKKLRDEIK--------------GKN 572 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~---------~~~~~e~iq~e~~~l~~Ei~--------------~k~ 572 (878)
...++..+.+|+.....+++.-...+..|..+.. ..+.+..++.++..++.++. ..+
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~ 281 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATK 281 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4567888888888888888877777777776632 23334445555555554443 345
Q ss_pred HHHHHHHHHHhhhh
Q 002808 573 DQIALLEKQIADSI 586 (878)
Q Consensus 573 ~qi~~Le~~i~~s~ 586 (878)
.||+.|++++....
T Consensus 282 ~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 282 REIAQLEEQKEEEG 295 (498)
T ss_pred HHHHHHHHHHHhhc
Confidence 67888888775543
No 244
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=67.30 E-value=2.1e+02 Score=31.76 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=41.1
Q ss_pred hhhHHHHHhhhHHHHHHHHH-------HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 528 KILAGEVALHSSALKRLSEE-------AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 528 k~~~~Ei~~~ss~lkrL~eq-------a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
--+..|+.-+++-+.-|+.| +..--=+--|.....||+.|++++++.|..++.-|.
T Consensus 139 A~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 139 ATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556777788888888888 111112234677899999999999999999888774
No 245
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.22 E-value=2.3e+02 Score=32.24 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhch-hhhhhhhh--------hhhhHHHHHHHHhhHHHHHHHhhhhh
Q 002808 696 SRLQVQAAEIEELNRKVTELTEAKEQLELRNQK-LSEESSYA--------KGLASAAAVELKALSEEVAKLMNHKE 762 (878)
Q Consensus 696 ~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~k-l~ee~~ya--------k~lasaaavelk~l~~evtkl~~~n~ 762 (878)
.+-+.|+.=+..|-.....|..+|.-|+.+-.. ...=.+|- .+.+--..-.++.|..||.+|..|=.
T Consensus 171 ~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~ 246 (310)
T PF09755_consen 171 TLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLA 246 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888999999999999999999876432 22223333 44444555567888888887765533
No 246
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=66.91 E-value=2.7 Score=46.85 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..++.+ .+.|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 444555553 4567889999999999984
No 247
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.80 E-value=3.9e+02 Score=34.81 Aligned_cols=71 Identities=27% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhh-------hhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 702 AAEIEELNRKVTELTEAKEQLEL-------RNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~-------~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
+-||+.++-+..++.|+...|+. |-.++..|.+.-|.=-.++-+.=|-|..|=.+|.--=+.+..+|..+.
T Consensus 417 q~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~ 494 (1200)
T KOG0964|consen 417 QKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAE 494 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777666665543 335666666666666667777777788887887777777777776655
No 248
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.71 E-value=2.1e+02 Score=32.44 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCCchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCc
Q 002808 513 SIKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNT 592 (878)
Q Consensus 513 ~~~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k 592 (878)
...+.=|+|+|.-.|-++.+.++....-++ .+..+.+.++..+..|+.|+...++||+..+.-|.+-+..-...
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~------eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYR------EKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD 180 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence 334455677776666666666665433322 12334566777788888899999999988888887766533221
Q ss_pred ccchhhhHHH-------HHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 593 MDNSEVSQSF-------AELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 593 ~~~~ev~qal-------~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
...-|+...+ .-+..+ +.+.=| .++-.--|-..|..+..+..+|++.|..||.||..-
T Consensus 181 ~~ngd~~~~~~~~~~~~~~~vs~--e~a~~L--~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 181 ATNGDTSDEPNNVGHPKRALVSQ--EAAQLL--ESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred CCCCccccCccccCCCcccccch--hhhhhh--cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222210 000000 000001 111222344568888899999999999999999653
No 249
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.66 E-value=2.1 Score=39.99 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.2
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+-||++|+|||+...
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5779999999999975
No 250
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.64 E-value=82 Score=35.80 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002808 626 IQEQLNQKICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 626 lqEqL~~K~~e~~~lqeel~~Lk~ql~ 652 (878)
+.+++.+-..++..++..+..++.+|.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555543
No 251
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.44 E-value=93 Score=33.97 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhhHHHHHhh
Q 002808 830 AELQRKVEESKKREAYLENE 849 (878)
Q Consensus 830 ~el~~~~~e~k~~e~~len~ 849 (878)
.+|+.-|+-+|-.+-.-.+|
T Consensus 192 ~~L~~EL~~~kde~k~T~~D 211 (246)
T PF00769_consen 192 KELKSELEQLKDEEKQTQLD 211 (246)
T ss_dssp HHHHHHHHTTB-CCG--HHH
T ss_pred HHHHHHHHHHhhhhccchhH
Confidence 45666666666544443343
No 252
>PRK12704 phosphodiesterase; Provisional
Probab=66.44 E-value=1.3e+02 Score=36.38 Aligned_cols=56 Identities=23% Similarity=0.184 Sum_probs=42.7
Q ss_pred HHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 602 FAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 602 l~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
|..-..+++.+...|+.+..+....+++|..+..++..+++++..+.++....|+.
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~ 146 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567777777888888888888888888888888888888888887776664
No 253
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.36 E-value=1.3e+02 Score=30.79 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 559 VEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 559 ~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
.+.+..++.++..++.++.+.+.+.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444443
No 254
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.13 E-value=4.3e+02 Score=35.07 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=70.4
Q ss_pred CCchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH--HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccC
Q 002808 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEE--AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (878)
Q Consensus 514 ~~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq--a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~ 591 (878)
..|..-|..+-.+|..+++.-..+.+.+|.--.+ +-.+|-++. |.=|+.|++--.-|.+..+..+.++..-
T Consensus 263 ~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~a----l~fL~kenel~~~~~~~~q~~~~~~~~k--- 335 (1293)
T KOG0996|consen 263 NRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEA----LEFLKKENELFRKKNKLCQYILYESRAK--- 335 (1293)
T ss_pred cccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3466678999999999999888888877766554 345555543 4456666666655666555555442221
Q ss_pred cccchhhhHHHHHHHHHhhhhhh-hhHHHHhhhHHHHHHHHHHHHHH
Q 002808 592 TMDNSEVSQSFAELAAQLNEKSF-ELEVKAADNRIIQEQLNQKICEC 637 (878)
Q Consensus 592 k~~~~ev~qal~eL~~q~~eKs~-elE~ksadN~~lqEqL~~K~~e~ 637 (878)
.+...+.++.+++-+.-.++|.. +--.....|+.....+.++..+|
T Consensus 336 i~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~ 382 (1293)
T KOG0996|consen 336 IAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKEL 382 (1293)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33556677777776666676665 33233344444444444444433
No 255
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=66.13 E-value=3.9 Score=46.56 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=28.7
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 118 TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 118 ~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..|..+|+.+...+.. .....+|..|+.|+||||.+.
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~~ 40 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLIK 40 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHHH
Confidence 34689999987665543 334567889999999999983
No 256
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=65.97 E-value=4.4 Score=44.63 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=26.3
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-+||.+++ |..+.+. +...+-.|....++-||++|+|||+++.
T Consensus 12 ~~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 35777765 3444332 2222223443458889999999999984
No 257
>PF13479 AAA_24: AAA domain
Probab=65.75 E-value=3.8 Score=43.05 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.1
Q ss_pred CcceeeecccCCCCcccccCC
Q 002808 141 NGTIFAYGVTSSGKTHTMHTP 161 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~ 161 (878)
+..|+.||++|+|||++...-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 346888999999999987544
No 258
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.11 E-value=3.1 Score=42.45 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=12.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
..+..|++|||||+|+.
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 45668999999999985
No 259
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.94 E-value=1.6e+02 Score=37.08 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=41.0
Q ss_pred HHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 602 FAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 602 l~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
++|.++++..--|.||.--+||-+|-=.|+|+-.|..-|.+=.--||.-.+.+|
T Consensus 503 v~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 503 VEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666789999999999999999999998888776666666555544
No 260
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.44 E-value=4.6 Score=39.38 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.0
Q ss_pred HhhcCCCcceeeecccCCCCccccc
Q 002808 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.+. ..++..|+||||||.++.
T Consensus 19 ~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 19 ALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHcCC-CcEEEECCCCCchhHHHH
Confidence 344442 455677999999999875
No 261
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.31 E-value=3.9e+02 Score=35.07 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhhhHHHHHh
Q 002808 517 IDQIDLLREQQKILAGEVAL 536 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~ 536 (878)
.+++|.|.++-+.+-.||.-
T Consensus 651 ek~~~~L~~~k~rl~eel~e 670 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKE 670 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788888887777777663
No 262
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=64.26 E-value=4.4 Score=48.46 Aligned_cols=110 Identities=20% Similarity=0.312 Sum_probs=61.0
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc-----CC-CceeEEEEEeeeeecceeee
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVND 181 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~ef~V~vS~lEIYnE~I~D 181 (878)
.|.||.+++.+..-..+++.+ .. +...+..|+-+|.+||||++.-. +. ...-.|.|.|-.+..+.+-.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~-----~~-~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~ 265 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA-----RV-VARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLES 265 (534)
T ss_pred cCccCceEECCHHHHHHHHHH-----HH-HhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHH
Confidence 478888888755444444432 22 33678899999999999998853 22 22233445544443332222
Q ss_pred -cCCCCC---------CCcceeecCCC-eEecccEEEEecCHHHHHHHHHHhh
Q 002808 182 -LLNPAG---------QNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (878)
Q Consensus 182 -LL~p~~---------~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (878)
|+...+ ..-.+....+| .|+.++...+..-...++.+|..+.
T Consensus 266 ~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGE 318 (534)
T ss_pred HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCc
Confidence 221110 01112223345 5777777776666666777776654
No 263
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=64.24 E-value=73 Score=30.48 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
........+|.....++..|+.++..+...|....
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666677777777777777765544
No 264
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.17 E-value=1.9e+02 Score=37.40 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEE 547 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq 547 (878)
-+++..|++-.+.+-+-.++++..|++|...
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~ 210 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDE 210 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4456666777777777777777777777655
No 265
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.83 E-value=2.4 Score=44.33 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=14.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999985
No 266
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.49 E-value=4.1e+02 Score=33.92 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 628 EQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 628 EqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
|+|+....+.+.+..+...|..+|
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666
No 267
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.39 E-value=31 Score=35.08 Aligned_cols=61 Identities=30% Similarity=0.403 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEK 580 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~ 580 (878)
+..++..|.+|+..+..++..-..-|..| ...|.++++..+|..|..||+..+..+..|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L----~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASL----SSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467777777777777777666655555 46688888988998888888877665555554
No 268
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.07 E-value=3.7e+02 Score=33.26 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
.++++.++...+..+++.++...+.++.....
T Consensus 259 ~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 259 DLFEEREQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555556666666777777777665443
No 269
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.99 E-value=36 Score=32.91 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=44.3
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
+.+++..++..|-.|+++- .++...|+.++.+...|+..|+-|.++|++.|...
T Consensus 2 dk~elfd~l~~le~~l~~l-------~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVL-------LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred chhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5577777777777775544 45556799999999999999999999999999874
No 270
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=62.95 E-value=2.6 Score=41.81 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=14.2
Q ss_pred hcCCCcceeeecccCCCCccccc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|-..+|+-+|.+|+|||+.+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHH
Confidence 46667889999999999999985
No 271
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.88 E-value=3.4 Score=46.56 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..++.+ ...|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 3566777999999998874
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=62.54 E-value=2.8 Score=39.08 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.8
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|++|||||+...
T Consensus 1 vI~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47889999999999875
No 273
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.46 E-value=4.1e+02 Score=34.89 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=69.1
Q ss_pred cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhccc-CcccchhhhHHHHHHHHHhhhh-hhhhHHHHhhhHHHH
Q 002808 550 RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH-NTMDNSEVSQSFAELAAQLNEK-SFELEVKAADNRIIQ 627 (878)
Q Consensus 550 ~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~-~k~~~~ev~qal~eL~~q~~eK-s~elE~ksadN~~lq 627 (878)
..-++...+.+|.+++.++++-.--...+|+.|.+....-- .-.-..+..+.+..|-.++.-. .+||++-..+-+.-|
T Consensus 315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~ 394 (1141)
T KOG0018|consen 315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQ 394 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666655444111 1112234555565555554333 588889999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 628 EQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 628 EqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
+-|........++++.+..+++++..
T Consensus 395 ~~ld~~~~~~~elE~r~k~l~~sver 420 (1141)
T KOG0018|consen 395 DTLDHELERRAELEARIKQLKESVER 420 (1141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999833
No 274
>PF15294 Leu_zip: Leucine zipper
Probab=62.21 E-value=49 Score=36.86 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
++.||.+|+.||+..++.++.||++-.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at 156 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQAT 156 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777777777777776653
No 275
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.19 E-value=1.5e+02 Score=35.68 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHH
Q 002808 524 REQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFA 603 (878)
Q Consensus 524 ~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~ 603 (878)
.++|++.+.-|.--+-.|..+.++ ..+.|.|+.+|..+|=.++..|+.+ .+.|++..+.+|++.
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~e------l~~q~Ee~skLlsql~d~qkk~k~~----------~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKE------LSRQQEENSKLLSQLVDLQKKIKYL----------RHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 355555555554443333333333 2233444445444444443333321 123556666666632
Q ss_pred HHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002808 604 ELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFL 647 (878)
Q Consensus 604 eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~L 647 (878)
.-- +.-.++.+.|+|+-.+-...+.+-|++|.-|
T Consensus 268 da~----------~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 268 DAQ----------RQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred hhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 221 2223444555554444444444444544443
No 276
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.03 E-value=55 Score=31.11 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~ 584 (878)
+..+++.++.+++..-.||..||..+.+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E 35 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKE 35 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 277
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=61.94 E-value=3.2 Score=44.63 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.4
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 67888889999999999995
No 278
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.69 E-value=7.9 Score=44.42 Aligned_cols=91 Identities=18% Similarity=0.308 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCChhh-hccCCeEEEecCCCEEEeCCCCC------------ceeEEeccccCCCCcchhHHHHHHHHHH
Q 002808 67 ENVTVTVRFRPLSPRE-IRQGEEIAWYADGETILRNEDNP------------SIAYAYDRVFGPTTTTRHVYDIAAQHVV 133 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E-~~~g~~~~~~~d~~~i~~~~~~~------------~~~F~FD~VF~~~atQeeVY~~~~~plV 133 (878)
..-+.+|++.+.-.++ +..|..++...+...|+..-+.. .-.-+|+.|=+-+..-++|.+.+--||.
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 3346778888866555 45666676665665554321110 0123344444433344677777777776
Q ss_pred H-Hhhc--CCC--cceeeecccCCCCccc
Q 002808 134 S-GAMD--GIN--GTIFAYGVTSSGKTHT 157 (878)
Q Consensus 134 ~-~vl~--GyN--~tIfAYGqTGSGKTyT 157 (878)
+ ..|+ |.. -.|+-||++|+|||-.
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHH
Confidence 5 3333 443 3489999999999854
No 279
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.67 E-value=2.6 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=0.0
Q ss_pred HhhHHH---HHHHhhhhhhHHHHHHhhcC
Q 002808 748 KALSEE---VAKLMNHKERLTAELAAAKS 773 (878)
Q Consensus 748 k~l~~e---vtkl~~~n~~l~~el~~~~~ 773 (878)
|.|.++ |.+|-..|.+|..|+...|.
T Consensus 250 k~l~~ql~~i~~LE~en~~l~~Elk~Lr~ 278 (722)
T PF05557_consen 250 KELKEQLAHIRELEKENRRLREELKHLRQ 278 (722)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 55778888889888887774
No 280
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.33 E-value=25 Score=31.17 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH--------HhcCCchHHHHHHHHHHHHHHhhh
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEE--------AARNPQKEQLQVEIKKLRDEIKGK 571 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq--------a~~~~~~e~iq~e~~~l~~Ei~~k 571 (878)
...++.-|++.||.+.-.+.-+-..+|.|... ...+.+..+++.|+..|..|+++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999876 335555555555555555555443
No 281
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.04 E-value=59 Score=34.09 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAA 607 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~ 607 (878)
++..+.+|+.+++..+..|..|+.+|......-....+-..+++.+.+|-.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~ 117 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKK 117 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 344566667777777777777777775553332222233334444333333
No 282
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.74 E-value=2.3e+02 Score=35.48 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEE 547 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq 547 (878)
..++..|..|+.....+.+-...-+..|..+
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~ 266 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKA 266 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778777776665555544444444444
No 283
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=60.68 E-value=4.7 Score=44.36 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=16.8
Q ss_pred cCC-CcceeeecccCCCCccccc
Q 002808 138 DGI-NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~Gy-N~tIfAYGqTGSGKTyTM~ 159 (878)
.|- ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3566669999999999875
No 284
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.09 E-value=85 Score=31.90 Aligned_cols=67 Identities=28% Similarity=0.401 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 773 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~ 773 (878)
..|+..|..+..+|.++-..|...+..|..|-. .|.+.-. ...|..+|+.|..+++.|...|...++
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~---~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELA---SLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777777777666655421 2222221 223566777777777777777776664
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.09 E-value=7.3 Score=45.16 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.7
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999985
No 286
>PHA00729 NTP-binding motif containing protein
Probab=60.01 E-value=6 Score=42.63 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCcceeeecccCCCCcccccC
Q 002808 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (878)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (878)
++.++..+..|--..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 45566666543335799999999999998753
No 287
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.85 E-value=63 Score=38.71 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 622 DNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 622 dN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
....+..++.....++.++++++..|+.+|..+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33555566677777888888999999999877664
No 288
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=59.58 E-value=5.6 Score=40.73 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+++..++.. ...|.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3444444543 3456778999999999874
No 289
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.43 E-value=1.4e+02 Score=34.62 Aligned_cols=86 Identities=20% Similarity=0.336 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHH---hh---hHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKA---AD---NRIIQEQL 630 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ks---ad---N~~lqEqL 630 (878)
|-.++..+-+|...+++++..++.+.... -..|.+..+.|.++..++++--+++|.|. .| .-.++.-|
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~------s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQA------SEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 33344445555555544444444444211 11244555555555555555555555443 22 22344555
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 002808 631 NQKICECEGLQETIGFLK 648 (878)
Q Consensus 631 ~~K~~e~~~lqeel~~Lk 648 (878)
.+...|+.+|.-.|.-++
T Consensus 338 ~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 338 TKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHhhhhhheeh
Confidence 555555555544444333
No 290
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=59.36 E-value=4.7 Score=39.75 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.1
Q ss_pred ee-eecccCCCCcccc
Q 002808 144 IF-AYGVTSSGKTHTM 158 (878)
Q Consensus 144 If-AYGqTGSGKTyTM 158 (878)
|+ -.|+||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 44 4699999999974
No 291
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=58.93 E-value=4.4 Score=45.56 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCCccCCCCchhhhhhccCC---CC-ccceeEEeeCCCCC
Q 002808 298 LTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLS---GH-GRVSLICTVTPSSS 347 (878)
Q Consensus 298 ~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLG---Gn-skT~mIa~ISPs~~ 347 (878)
+.|.+.|..-+.|- .+.||-||+|.+. -| ....+|-+..|-..
T Consensus 274 ~QlsRFin~yt~gl-------p~~i~~LLKdif~~~~~n~~ysWiiYnt~P~~e 320 (369)
T PF02456_consen 274 SQLSRFINNYTKGL-------PTAISLLLKDIFNHHQQNSKYSWIIYNTDPVSE 320 (369)
T ss_pred HHHHHHHHHhccCC-------ChhHHHHHHHHHHHHHhcCCccEEEecCCCCcc
Confidence 45677776665542 2457888888774 23 34556666666543
No 292
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=58.89 E-value=8.2 Score=42.55 Aligned_cols=17 Identities=41% Similarity=0.444 Sum_probs=14.6
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999985
No 293
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=58.75 E-value=1.3e+02 Score=31.64 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHH
Q 002808 562 KKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQ 641 (878)
Q Consensus 562 ~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lq 641 (878)
..+..|++..+..+..+|+||. .--.+++.+...|+.+..+......+|+++...+....
T Consensus 67 ~~~E~E~~~~~~el~~~E~rl~--------------------~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~ 126 (201)
T PF12072_consen 67 QELERELKERRKELQRLEKRLQ--------------------QREEQLDRRLEQLEKREEELEKKEEELEQRKEELEERE 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777772 22245666666677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHhh
Q 002808 642 ETIGFLKQQLNDALEL 657 (878)
Q Consensus 642 eel~~Lk~ql~~~~~~ 657 (878)
.++..+.++....|+.
T Consensus 127 ~e~~~~~~~~~~~Le~ 142 (201)
T PF12072_consen 127 EELEELIEEQQQELEE 142 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776666653
No 294
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=58.73 E-value=3.5 Score=38.53 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=14.4
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999999986
No 295
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=58.49 E-value=2.1e+02 Score=33.86 Aligned_cols=118 Identities=24% Similarity=0.273 Sum_probs=66.2
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhh
Q 002808 520 IDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVS 599 (878)
Q Consensus 520 ~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~ 599 (878)
+++|-+|+.+..+|+.---..+.+|.+| ...++.+.+..|.+++..|.+.--+|++.||++= .++-.-+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~-~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~----------~~l~~~l 213 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQ-NQDVSEEDLLKELKNLKEEEERLLQQLEELEKEE----------AELDHQL 213 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 4555666677888888778888888665 3444777788888888888877766666666543 1233333
Q ss_pred HHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 600 QSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 600 qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
+.+..-+.+++|| -.....+....+=|+=+-..++..+...+.-=+.||
T Consensus 214 ~e~~~~~~~~~e~---~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~ql 262 (447)
T KOG2751|consen 214 KELEFKAERLNEE---EDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQL 262 (447)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 3333333333322 233344444444444444444444444444444444
No 296
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=58.31 E-value=4.9 Score=45.40 Aligned_cols=27 Identities=37% Similarity=0.422 Sum_probs=18.9
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++..++.+ .+.|+-.|.||||||.+|.
T Consensus 136 ~L~~~v~~-~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 136 VIRSAIDS-RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 34444443 2357788999999999984
No 297
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=58.17 E-value=4.7e+02 Score=32.85 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHH
Q 002808 622 DNRIIQEQLNQKICECEGLQETIGFL-KQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQV 700 (878)
Q Consensus 622 dN~~lqEqL~~K~~e~~~lqeel~~L-k~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (878)
.++++.++|.+|..-+..|+++=..| |+||.+-.-- +.-.. .+++.....+.+++. +..
T Consensus 440 a~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iI-----------kKLRA--------k~ke~etl~~K~ge~-i~~ 499 (961)
T KOG4673|consen 440 AAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAII-----------KKLRA--------KIKEAETLEEKKGEL-ITK 499 (961)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHH--------HhhhhhHHHHHhhhH-HHH
Confidence 45666688888888888888776655 5555441110 00000 011111112222221 222
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhh-----hhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCc
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEE-----SSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSP 775 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee-----~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~ 775 (878)
-+.|.+.||+=+.--.|-..++.---.|+.-| -.|+.-=|-+++.|-+++|++-| |--+-++|--.--+-
T Consensus 500 L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat-----~d~a~~Dlqk~nrlk 574 (961)
T KOG4673|consen 500 LQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQAT-----NDEARSDLQKENRLK 574 (961)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHhhhh
Confidence 34555666654443333333333333333333 34666567778888888888877 444444331110000
Q ss_pred ccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhh
Q 002808 776 TQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENE 849 (878)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~ 849 (878)
...-|..+. +-+.-++|||--|....|--+.=|+.+-+- -.+|++++++|..|-..|=-+
T Consensus 575 --------Qdear~~~~---~lvqqv~dLR~~L~~~Eq~aarrEd~~R~E---i~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 575 --------QDEARERES---MLVQQVEDLRQTLSKKEQQAARREDMFRGE---IEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred --------hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 000001000 111245677776664433333334443322 257888888888776655433
No 298
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=58.13 E-value=3.8 Score=39.21 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.3
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+.+|.+|||||+...
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999875
No 299
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.99 E-value=97 Score=29.01 Aligned_cols=71 Identities=27% Similarity=0.426 Sum_probs=51.4
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH----HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEE----AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSI 586 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq----a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~ 586 (878)
..|++..|+++.+.+..++..-..--+.++.+ .....+-+.+..+++.+..+|++.+.++..+|..+....
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777776666555545555554 122267788999999999999999999999998885544
No 300
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=57.92 E-value=2.3e+02 Score=34.30 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=35.1
Q ss_pred HHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 606 AAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 606 ~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
..+++.+..+|+.+..+.....++|.++..++.+++.++..+.++...-|+.
T Consensus 89 ee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~ 140 (514)
T TIGR03319 89 EETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER 140 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777667777777777777777777777777766666555553
No 301
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=57.84 E-value=6.3 Score=43.09 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=23.8
Q ss_pred CcchhHHHHHHHHHHHHhhc--CCCcceeeecccCCCCccccc
Q 002808 119 TTTRHVYDIAAQHVVSGAMD--GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 119 atQeeVY~~~~~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+++.+. +..++..... +....++-||++|+|||+...
T Consensus 7 iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 345666554 2333332221 222346779999999999985
No 302
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=57.70 E-value=6.3 Score=41.83 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=14.6
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
.+-.+++.|+.||||||.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 55689999999999999864
No 303
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=57.55 E-value=6.8 Score=39.83 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=17.3
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34455776 577899999999874
No 304
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=57.41 E-value=45 Score=36.94 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=31.4
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCC
Q 002808 734 SYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSS 774 (878)
Q Consensus 734 ~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~ 774 (878)
.|-..+++...-+++.+..++++|-.++..+.+++..+..-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 124 AIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455777888889999999999999999888877643
No 305
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=56.95 E-value=1e+02 Score=35.78 Aligned_cols=47 Identities=28% Similarity=0.258 Sum_probs=30.5
Q ss_pred cccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 592 TMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 592 k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
+-|.+-++|+|.|..--| ..|.||||..+ .-.|.|+..|||.|+..=
T Consensus 291 krdy~fi~etLQEERyR~--------------erLEEqLNdlt---eLqQnEi~nLKqElasme 337 (455)
T KOG3850|consen 291 KRDYKFIAETLQEERYRY--------------ERLEEQLNDLT---ELQQNEIANLKQELASME 337 (455)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHH---HHHHHHHHHHHHHHHHHH
Confidence 556777888876654333 35777777553 234678888888876533
No 306
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=56.94 E-value=7 Score=46.57 Aligned_cols=108 Identities=14% Similarity=0.232 Sum_probs=58.7
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc-----CC-CceeEEEEEeeeeecceee-ec
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVN-DL 182 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~ef~V~vS~lEIYnE~I~-DL 182 (878)
.|+.+.+....-..+++.+ .. +...+..|+-+|.+|+||++.-. .+ ...-.|.|.|-.+..+.+- .|
T Consensus 185 ~~~~iig~s~~~~~~~~~i-----~~-~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI-----EV-VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHH-----HH-HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 5666666544434444432 22 45678999999999999998863 22 2223344555444433222 12
Q ss_pred CCCCC---------CCcceeecCCC-eEecccEEEEecCHHHHHHHHHHhh
Q 002808 183 LNPAG---------QNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (878)
Q Consensus 183 L~p~~---------~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (878)
+...+ ..-.+....+| .|+.++...+..-...++.+|..+.
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~ 309 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE 309 (509)
T ss_pred cCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCC
Confidence 22111 01112223345 6778877777666666777776554
No 307
>PTZ00121 MAEBL; Provisional
Probab=56.79 E-value=78 Score=42.29 Aligned_cols=101 Identities=27% Similarity=0.290 Sum_probs=48.5
Q ss_pred hhhhhHHHHHHHH----hhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccC-CCCChHHHHHHHHH
Q 002808 736 AKGLASAAAVELK----ALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQN-QDGSSLDLKRELAL 810 (878)
Q Consensus 736 ak~lasaaavelk----~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~ 810 (878)
+|-||-+-|-||| +|-|||-||-.+-.+.-+|-+--.+-...+ .-..+|.+ .---+++|++.-..
T Consensus 1575 ~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk----------~E~~kk~eeekKk~Eelkk~eeE 1644 (2084)
T PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK----------AEELKKAEEEKKKVEQLKKKEAE 1644 (2084)
T ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHH
Confidence 4566677777775 466788888777766666544222111000 00001110 00124455555444
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHH
Q 002808 811 SREREVSYEAALLEKDQQEAELQRKVEESKKREAYL 846 (878)
Q Consensus 811 ~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~l 846 (878)
.+.|..++-.+=-|+..+.+|++++.+|.|+|.+.+
T Consensus 1645 ~kkk~Ea~kK~EEE~kkraeEeaKk~EEekKKaEe~ 1680 (2084)
T PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333344456666666666655443
No 308
>PTZ00424 helicase 45; Provisional
Probab=56.74 E-value=6 Score=44.87 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=18.8
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..++.|.|. +..++||||||.+..
T Consensus 59 i~~i~~~~d~--ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 59 IKPILDGYDT--IGQAQSGTGKTATFV 83 (401)
T ss_pred HHHHhCCCCE--EEECCCCChHHHHHH
Confidence 4456788875 467899999998753
No 309
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.51 E-value=1.1e+02 Score=36.46 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=54.8
Q ss_pred CCCchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCc
Q 002808 513 SIKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNT 592 (878)
Q Consensus 513 ~~~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k 592 (878)
+.+..|-+.-|.-|++.+-.|++- +..+=+.|..||+..+.+-..+.+||...+.+
T Consensus 54 gDTP~DTlrTlva~~k~~r~~~~~--------------------l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~---- 109 (472)
T TIGR03752 54 GDTPADTLRTLVAEVKELRKRLAK--------------------LISENEALKAENERLQKREQSIDQQIQQAVQS---- 109 (472)
T ss_pred CCCccchHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----
Confidence 455678888888888888877763 23334455556655555445555566322222
Q ss_pred ccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 593 MDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 593 ~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
+...++.+..+...+...++..++.|+.||...
T Consensus 110 -----------------------------~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 110 -----------------------------ETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred -----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 223444455555566777888888889898653
No 310
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=56.42 E-value=4.3 Score=46.82 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=42.4
Q ss_pred ceeeecccCCCCccccc---CCCceeEEEEEeeeeeccee--eecCCCCCCCcceeecCCCeEecccEEEEecCHHHHHH
Q 002808 143 TIFAYGVTSSGKTHTMH---TPNREFLLRVSYLEIYNEVV--NDLLNPAGQNLRIREDSQGTFVEGVKEEVVLSPAHALS 217 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~---g~~~ef~V~vS~lEIYnE~I--~DLL~p~~~~L~Ired~~G~~V~gLse~~V~S~ee~~~ 217 (878)
.|+-||.+||||||++. .....-.|++.++|-|.=.+ .-+|+... .-|..|..+++. ..+..++..
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~-----~~d~dg~~~~~~----~en~~d~i~ 102 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ-----LADKDGDKVEGD----AENFSDFIY 102 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc-----cCCCchhhhhhH----HHHHHHHHH
Confidence 35889999999999985 33344568999999885322 22222111 234445444432 456667777
Q ss_pred HHHH
Q 002808 218 LIAA 221 (878)
Q Consensus 218 lL~~ 221 (878)
++..
T Consensus 103 ~l~q 106 (438)
T KOG2543|consen 103 LLVQ 106 (438)
T ss_pred HHHh
Confidence 6654
No 311
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=56.41 E-value=1.6e+02 Score=34.82 Aligned_cols=300 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHhhhHHHHHhhhHHH-HHHHHH-----------------HhcCCchHHHHHHHHHHH
Q 002808 504 FLGQETPSTSIKTIDQIDLLREQQKILAGEVALHSSAL-KRLSEE-----------------AARNPQKEQLQVEIKKLR 565 (878)
Q Consensus 504 ~~~~~~~~~~~~~~d~~dlL~eQlk~~~~Ei~~~ss~l-krL~eq-----------------a~~~~~~e~iq~e~~~l~ 565 (878)
+......+......+.+.-|.++++.+..+|.-+...+ .++++- ............-...-.
T Consensus 71 l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 150 (424)
T PF03915_consen 71 LNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDL 150 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchH
Q ss_pred HHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHH------hhhHHHHHHHHHHHHHHHh
Q 002808 566 DEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKA------ADNRIIQEQLNQKICECEG 639 (878)
Q Consensus 566 ~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ks------adN~~lqEqL~~K~~e~~~ 639 (878)
.|++.-+.++++|-|-- +..+.++.+.+.++-+-+.++.+-+++.-.-+ +....|.++-....+....
T Consensus 151 ~Ev~~LRreLavLRQl~------~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdD 224 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLY------SEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDD 224 (424)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhh
Q 002808 640 LQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAK 719 (878)
Q Consensus 640 lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~ 719 (878)
||-.|..|+.-..+ -+-.+...++..=..+|..++.++..+.+-=
T Consensus 225 LQD~VE~LRkDV~~-----------------------------------RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i 269 (424)
T PF03915_consen 225 LQDLVEDLRKDVVQ-----------------------------------RGVRPSPKQLETVAKDISRASKELKKMKEYI 269 (424)
T ss_dssp HHHHHHHHHHHHHH-----------------------------------H-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------------------------cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHh---------------hcCCcccccccccc
Q 002808 720 EQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAA---------------AKSSPTQRRTSAVR 784 (878)
Q Consensus 720 ~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~---------------~~~~~~~~~~~~~~ 784 (878)
..+.-.-.|.-|. ||.+.-+|=-=|-.| +.|..+|-- ..........++.|
T Consensus 270 ~~~kp~WkKiWE~-------------EL~~V~eEQqfL~~Q-edL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r 335 (424)
T PF03915_consen 270 KTEKPIWKKIWES-------------ELQKVCEEQQFLKLQ-EDLLSDLKEDLKKASETFALVEQCTEEQEKSPSRSRNR 335 (424)
T ss_dssp HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCT------------
T ss_pred HHhCHHHHHHHHH-------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q ss_pred cCccccccccc-CCCCChHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHH
Q 002808 785 NGRRDGQIKRQ-NQDGSSLDLKRELAL----SREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAK 859 (878)
Q Consensus 785 ~~~~~~~~~~~-~~~~~~~~~~~e~~~----~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvak 859 (878)
+..+-...... ++...-+.+=+|+++ .-.|-.|+|.| |.=-+|..+ =.|...++.||.+ +|==.|
T Consensus 336 ~~~~~~~~~pg~~~~~~~~~VL~EV~aL~PDHE~RLeAIerA-------EKlRqkele--~~~~~~f~~EL~~-FV~~~k 405 (424)
T PF03915_consen 336 PVANLPIPEPGEDPHEARDQVLGEVRALQPDHESRLEAIERA-------EKLRQKELE--YRRVDEFQKELGN-FVEEKK 405 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCCCCCCCChhhHHHHHHHHHHhcCCCcHHHHHHHHHH-------HHHHHHHHH--hccccHHHHHHHH-HhccCc
Q ss_pred HhhcCCCCC
Q 002808 860 LKKSHGADT 868 (878)
Q Consensus 860 lkk~~~~~~ 868 (878)
|||+||.++
T Consensus 406 LKksGG~eE 414 (424)
T PF03915_consen 406 LKKSGGIEE 414 (424)
T ss_dssp ---------
T ss_pred ccccCCHHH
No 312
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=56.39 E-value=4.8e+02 Score=32.35 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYA 736 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~ya 736 (878)
..+.+.-++++..|-.+.++|.-+-.|-.+...-|
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 44667777888888888888877776666665555
No 313
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=56.33 E-value=6.7 Score=44.44 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=20.2
Q ss_pred HHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++..++.+. +.|+-.|.||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34444444433 457778999999999984
No 314
>PRK00106 hypothetical protein; Provisional
Probab=56.17 E-value=4.2e+02 Score=32.45 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=38.3
Q ss_pred HHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 603 AELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 603 ~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
..-..+++.+..+|+.+..+.....++|..+..++.++++++..+.++...-|+.
T Consensus 107 ~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~ 161 (535)
T PRK00106 107 TERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456777777777777777777777777777777777777777776665553
No 315
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.15 E-value=51 Score=33.90 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 605 LAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 605 L~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
...+|+........-..+|..|++++.+....+..|+.++..|++++...-+
T Consensus 88 fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666656666667899999999999999999999999999998866443
No 316
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.01 E-value=70 Score=31.44 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002808 622 DNRIIQEQLNQKICECEGLQETIGFLKQQ 650 (878)
Q Consensus 622 dN~~lqEqL~~K~~e~~~lqeel~~Lk~q 650 (878)
....|+++|..+...+.+++..+..+.++
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 109 ALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444
No 317
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=55.92 E-value=1.6e+02 Score=33.65 Aligned_cols=130 Identities=20% Similarity=0.291 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH---HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCc
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEE---AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNT 592 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq---a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k 592 (878)
...++.-|++-+.++-|+|..--..+.+..-. ...++.. .|=..+-.+++..+.||..||.-+.... ..|
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~----~ere~lV~qLEk~~~q~~qLe~d~qs~l---DEk 156 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP----HEREDLVEQLEKLREQIEQLERDLQSLL---DEK 156 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 35677888888888888887665555554322 1111111 3455677777888888888888662111 112
Q ss_pred ccchhhhHHH----HHHHHHh-------hhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002808 593 MDNSEVSQSF----AELAAQL-------NEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 593 ~~~~ev~qal----~eL~~q~-------~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~ 652 (878)
+|+.-=-.+| ..|-..+ +-+.-+++.-=.|||-|+|+|++...|..-+...|..||.-|.
T Consensus 157 eEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 157 EELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322111122 2222222 2334556666799999999999999999999999999998765
No 318
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.69 E-value=1.6e+02 Score=32.36 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSI 586 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~ 586 (878)
.+|.++..++.++.+.++=|+.||.-|....
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777777777777777777775544
No 319
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=55.59 E-value=3.9 Score=51.96 Aligned_cols=151 Identities=26% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCccccccc
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTS 781 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~ 781 (878)
..+++.|+..+.+-.+.+..|+.+..|+.-|-.-+|-=.-..++..-.=-||. --+|..+|..+..-.-.-.
T Consensus 270 e~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEea------KKkL~~~L~el~e~le~~~-- 341 (859)
T PF01576_consen 270 EHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEA------KKKLERKLQELQEQLEEAN-- 341 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHH------HHHHHHHHHHHHHHHHHHH--
Confidence 45677777777777777777777777777776655543333333211101111 1122222222221110000
Q ss_pred ccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHh
Q 002808 782 AVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLK 861 (878)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvaklk 861 (878)
.+.+.=+...+| --..++|++.+|..-...-..||..-.-=|..=+|++.++++...--..+..|..++|.=|.+|+
T Consensus 342 -~~~~~LeK~k~r--L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk 418 (859)
T PF01576_consen 342 -AKVSSLEKTKKR--LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLK 418 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 000000000011 11145566666665555445555444444444456666666666555566666666666666665
Q ss_pred hc
Q 002808 862 KS 863 (878)
Q Consensus 862 k~ 863 (878)
..
T Consensus 419 ~~ 420 (859)
T PF01576_consen 419 NE 420 (859)
T ss_dssp --
T ss_pred hh
Confidence 54
No 320
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.54 E-value=16 Score=33.19 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhHHHhHhhhh-------hhhhhchhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQ-------LELRNQKLSEES 733 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~-------l~~~n~kl~ee~ 733 (878)
+-|||+||.+...|.++... |+-.|++|-+|-
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45899999999888888554 888888887763
No 321
>PF13514 AAA_27: AAA domain
Probab=55.13 E-value=6.4e+02 Score=33.42 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 769 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~ 769 (878)
..+|+.+++++.++.+.-..++.+-..|.+.+-.... ..-.++...+.+...|..+-..+...|.
T Consensus 807 ~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~---e~l~~~~~~~~~~~~l~~~~~~~~~~l~ 871 (1111)
T PF13514_consen 807 QEQLEELEEELEQAEEELEELEAELAELLEQAGVEDE---EELREAEERAEERRELREELEDLERQLE 871 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665555555555555553322110 1112333455566666555555555553
No 322
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=55.00 E-value=4.2 Score=41.96 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.3
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
-++.+|.||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999986
No 323
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=54.67 E-value=7.3 Score=46.82 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCC--cceeeecccCCCCccccc
Q 002808 129 AQHVVSGAMDGIN--GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 129 ~~plV~~vl~GyN--~tIfAYGqTGSGKTyTM~ 159 (878)
++..+...+.|.. ..++.+||+|+|||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 4556666665553 467889999999999986
No 324
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.66 E-value=3.1e+02 Score=29.67 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
.....+++.+......+..++..+..-+.++-..
T Consensus 119 ~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~ 152 (302)
T PF10186_consen 119 EQLEELQNELEERKQRLSQLQSQLARRRRQLIQE 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555666666655555443
No 325
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.51 E-value=7.5 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..+++|.| ++..++||||||.+.
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHHH
Confidence 34567877 777889999999774
No 326
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=54.34 E-value=6.7 Score=48.01 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=30.6
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+||.+++. ..... .++..+..++...|+-||++|+|||+...
T Consensus 151 ~~~~~iiGq----s~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIK----ALLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred CcHHhceeC----cHHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 577877764 33333 34555566788889999999999999763
No 327
>PRK13764 ATPase; Provisional
Probab=54.15 E-value=6.2 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=17.3
Q ss_pred CCCcceeeecccCCCCccccc
Q 002808 139 GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.....|+..|+||||||+++.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 334558999999999999985
No 328
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=54.05 E-value=5.1 Score=45.67 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..++. ..+.|+-.|+||||||++|.
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 34444443 23457778999999999984
No 329
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.04 E-value=51 Score=35.14 Aligned_cols=72 Identities=8% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCC
Q 002808 700 VQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSS 774 (878)
Q Consensus 700 ~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~ 774 (878)
..+.|+++|+.+..++... +..+...|.+...=++...+..-=|.+.|.+|++++..+|..|.+++...+..
T Consensus 97 ~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666776655555433 23333334333333455555555667778888888888888888887777653
No 330
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.91 E-value=1.1e+02 Score=27.97 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
++.++..++.++..-..||..|+..+.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~ 29 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777777764
No 331
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=53.90 E-value=7.1 Score=46.75 Aligned_cols=111 Identities=18% Similarity=0.298 Sum_probs=60.4
Q ss_pred eeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc-----CC-CceeEEEEEeeeeecceee
Q 002808 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVN 180 (878)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~ef~V~vS~lEIYnE~I~ 180 (878)
..+.||.+++....-..+.+.+ .. +...+..|+-+|.+||||++.-. +. ...-.|.+.|-.+..+.+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHH
Confidence 3578999887654333333322 11 34467889999999999998763 11 2222244555444332221
Q ss_pred -ecCCCCC--------CCcc-eeecCCC-eEecccEEEEecCHHHHHHHHHHhh
Q 002808 181 -DLLNPAG--------QNLR-IREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (878)
Q Consensus 181 -DLL~p~~--------~~L~-Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (878)
.|+.... ...- +....+| +|+.++...+..-...++.+|..|.
T Consensus 273 ~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 273 SELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 326 (520)
T ss_pred HHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 1222111 0011 1122245 6777777777666667777776653
No 332
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=53.60 E-value=4.6 Score=38.77 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=14.5
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+-+|++|+|||+.+.
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999999985
No 333
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.43 E-value=2e+02 Score=30.40 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=9.0
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 002808 635 CECEGLQETIGFLKQQLN 652 (878)
Q Consensus 635 ~e~~~lqeel~~Lk~ql~ 652 (878)
.++..|+.++..+++.+.
T Consensus 159 ~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555543
No 334
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=53.35 E-value=3.1e+02 Score=29.28 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHh
Q 002808 737 KGLASAAAVELKALSEEVAKLMNHKERLTAELAA 770 (878)
Q Consensus 737 k~lasaaavelk~l~~evtkl~~~n~~l~~el~~ 770 (878)
+-|..|| -++|.+-...+-.+|.+|..+|.-
T Consensus 144 ~ale~~A---~~~l~e~~~~i~~EN~~L~k~L~~ 174 (206)
T PF14988_consen 144 QALELAA---KKSLDEFTRSIKRENQQLRKELLQ 174 (206)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 345667777788888888888763
No 335
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=53.19 E-value=9.7 Score=46.55 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=58.3
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc-----CC-CceeEEEEEeeeeeccee-e
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVV-N 180 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~ef~V~vS~lEIYnE~I-~ 180 (878)
.|+||.+.+.+. .+..+... +..+ ...+..|+-+|.+|+||++.-. +. ...-.|.|.|-.+..+.+ -
T Consensus 321 ~~~~~~l~g~s~----~~~~~~~~-~~~~-a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 321 SHTFDHMPQDSP----QMRRLIHF-GRQA-AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred cccccceEECCH----HHHHHHHH-HHHH-hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHH
Confidence 467887775433 33322222 2222 3567889999999999988753 11 112234444444433222 1
Q ss_pred ecCCCC------CCCcceeecCCC-eEecccEEEEecCHHHHHHHHHHhh
Q 002808 181 DLLNPA------GQNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (878)
Q Consensus 181 DLL~p~------~~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (878)
+|+... +..-.+....+| .|+.++-..+..-...++.+|..+.
T Consensus 395 elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGV 444 (638)
T ss_pred HhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCc
Confidence 243211 111123333456 6788777777666666777776554
No 336
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=53.18 E-value=3.3e+02 Score=32.75 Aligned_cols=58 Identities=7% Similarity=-0.004 Sum_probs=44.5
Q ss_pred cccchhhhHHHHHHHHHhhhhhhhhHHH-HhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002808 592 TMDNSEVSQSFAELAAQLNEKSFELEVK-AADNRIIQEQLNQKICECEGLQETIGFLKQ 649 (878)
Q Consensus 592 k~~~~ev~qal~eL~~q~~eKs~elE~k-sadN~~lqEqL~~K~~e~~~lqeel~~Lk~ 649 (878)
+..+..++.+|.|=...|.++..+++.. +++.-.|.+||......+..|..+-..|-.
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888888999999998876 477778888888877777777776665544
No 337
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.15 E-value=4.5e+02 Score=31.82 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHhhhHHHHHhhhHHHHHHHHH
Q 002808 526 QQKILAGEVALHSSALKRLSEE 547 (878)
Q Consensus 526 Qlk~~~~Ei~~~ss~lkrL~eq 547 (878)
||..+-.|=+++..-+.||..+
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~ 253 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQ 253 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777776
No 338
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=53.07 E-value=6 Score=46.91 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=30.5
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-Hhh----cCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAM----DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl----~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..+||.|.+.+...+.+.+ ++..+-. ..+ ......|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 4688888876555444443 2222211 011 1223358889999999999975
No 339
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=52.87 E-value=4.8e+02 Score=31.37 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=30.2
Q ss_pred HHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 706 EELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 706 e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
|+.-+|.-+|+-+-+..-.+.-||.-+.---|-+ ..+.+++|-|+-.|=--|.-++...+
T Consensus 371 e~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le-------aq~~~~slek~~~~~~sl~~~i~~~~ 430 (622)
T COG5185 371 ELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE-------AQGIFKSLEKTLRQYDSLIQNITRSR 430 (622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 3344444444444444444555554444333323 33445666677666666666665443
No 340
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=52.80 E-value=7.4 Score=44.37 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..++.+. +.|+-.|.||||||.++-
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 3444445555 778889999999999973
No 341
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=52.79 E-value=8.1 Score=47.77 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhcCCCcceeeecccCCCCcccc
Q 002808 122 RHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 122 eeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
-.||..+-.-.-.-...|-|-||+-.|.+|||||+++
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 4677744333333334699999999999999999996
No 342
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=52.74 E-value=2.6e+02 Score=28.24 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHH
Q 002808 554 KEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQK 633 (878)
Q Consensus 554 ~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K 633 (878)
.+.++..+..|.+|++.....-..++.. +...+.++..+-.-+..++..+++=-.||.....++..|.-+|+++
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~d------aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILD------AENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888998888775533322222 2222334444444445555555555555555555555555444444
Q ss_pred HHHHHhHHH
Q 002808 634 ICECEGLQE 642 (878)
Q Consensus 634 ~~e~~~lqe 642 (878)
.....+|+.
T Consensus 93 q~kv~eLE~ 101 (140)
T PF10473_consen 93 QEKVSELES 101 (140)
T ss_pred HHHHHHHHH
Confidence 444444433
No 343
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=52.61 E-value=6 Score=40.92 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=14.8
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
-..||..|++|||||+.+.
T Consensus 15 P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp -EEEEEES-TTSTTHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHH
Confidence 4568889999999999875
No 344
>PRK06547 hypothetical protein; Provisional
Probab=52.52 E-value=9.7 Score=39.00 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..+..+.---|.-+|.+|||||+.-.
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~ 33 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAG 33 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHH
Confidence 34445444444456667999999998764
No 345
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=52.06 E-value=5.3 Score=37.04 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=13.8
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6778999999998874
No 346
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=51.93 E-value=13 Score=40.21 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.3
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457789999999999874
No 347
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=51.77 E-value=11 Score=41.51 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 126 DIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 126 ~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-..+.||+ ..+.--+..|-.||+|++|||.++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 44456666 4566667788899999999999985
No 348
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=51.49 E-value=2.9e+02 Score=28.40 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRN 726 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n 726 (878)
..|..+|...+..|.+++.+|+...
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666443
No 349
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.41 E-value=1.1e+02 Score=37.51 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=30.7
Q ss_pred cccccccCCCC--ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 002808 789 DGQIKRQNQDG--SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESK 840 (878)
Q Consensus 789 ~~~~~~~~~~~--~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k 840 (878)
+=...|.|.+. +.++|++.+...++|= .=.++.+.+.++++.|||-.
T Consensus 598 dV~i~~ld~~~vv~~eelr~~~e~~~kr~-----ee~~r~~k~~~i~riieEYR 646 (652)
T COG2433 598 DVQIIRLDEFAVVDSEELRRAIEEWKKRF-----EERERRQKEEDILRIIEEYR 646 (652)
T ss_pred ceEEEEecceEeecHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44556666665 5678888777665431 12355667788888888854
No 350
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=51.39 E-value=8.6 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=19.0
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
|..+++|-| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344667876 888999999999874
No 351
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.39 E-value=7.4 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.6
Q ss_pred hhcCCCcceeeecccCCCCccccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+-.+.-..++-||++|+|||+...
T Consensus 31 i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 31 IEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHcCCCceEEEECCCCCCHHHHHH
Confidence 344555567779999999999875
No 352
>PF14282 FlxA: FlxA-like protein
Probab=51.25 E-value=1.3e+02 Score=28.56 Aligned_cols=62 Identities=32% Similarity=0.371 Sum_probs=45.7
Q ss_pred CchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 002808 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADS 585 (878)
Q Consensus 515 ~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s 585 (878)
....+|..|.+|++.|..+|.- |... ..-+.+.-+.++..|+.+|.....||+.|+......
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~-------l~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQE-------LSQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------HHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999988887762 2111 344666678888899999999888888888877544
No 353
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=51.22 E-value=2.2e+02 Score=31.50 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=15.2
Q ss_pred CCchHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 551 NPQKEQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 551 ~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
+++...+..++..|+.++..++.++..+.+..
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 165 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEA 165 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555444444443
No 354
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.01 E-value=1.2e+02 Score=34.64 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=71.2
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccc
Q 002808 520 IDLLREQQKILAGEVALHSSALKRLSEEAA----RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDN 595 (878)
Q Consensus 520 ~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~----~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~ 595 (878)
+-+--.|||+-+|-+-+ --+.+|.|+-. .+..-+.-|.|+..|+-.++.-+.|.--..--++ -.
T Consensus 58 i~~re~qlk~aa~~llq--~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~----------k~ 125 (401)
T PF06785_consen 58 IGRREKQLKTAAGQLLQ--TKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFM----------KT 125 (401)
T ss_pred hhHHHHHHHHHHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------Hh
Confidence 55556788888876532 23455555511 1111223345555555555554444332222111 12
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 596 SEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
+.-.|-|++|.-+++| +|..||=||+...-+|.+++++.+.|-+.|++++-
T Consensus 126 k~~~q~LE~li~~~~E----------En~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 126 KGDIQHLEGLIRHLRE----------ENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred cchHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 3345667788777764 67788889999999999999999999999988764
No 355
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.68 E-value=89 Score=36.58 Aligned_cols=30 Identities=40% Similarity=0.291 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
.|.||||.. ..-.|.|+..||++|+..-|.
T Consensus 262 rLEeqlNd~---~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 262 RLEEQLNDL---TELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Confidence 467777743 445688899999999875553
No 356
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=50.58 E-value=6 Score=40.49 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.3
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
+.++-+|+||+|||++..
T Consensus 4 ~~~ll~GpsGvGKT~la~ 21 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAK 21 (171)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 467889999999999863
No 357
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=50.36 E-value=1.2e+02 Score=32.70 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=26.9
Q ss_pred HHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 605 LAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 605 L~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
|.+.+-.|..+||.-..++..|+-|...+..|-..|=+|-+.||+|+
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33344444445555555566666666666666666666666666665
No 358
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=50.07 E-value=8.9 Score=43.89 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=30.0
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|.|+.|-+. +++- .-++..+.+-.-+.|+-+|.+|+||||.+-
T Consensus 13 ~~pf~~ivGq----~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 13 VFPFTAIVGQ----EEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCHHHHhCh----HHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 6889888874 3333 334444444333568899999999999974
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.99 E-value=6.8 Score=45.20 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=16.3
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577789999999999985
No 360
>PRK10536 hypothetical protein; Provisional
Probab=49.94 E-value=8.2 Score=42.49 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=27.9
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 3556566665555555443 2223 3589999999999999874
No 361
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.56 E-value=6.8 Score=43.30 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.5
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
--+|+-||++|+|||++--
T Consensus 151 PknVLFyGppGTGKTm~Ak 169 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAK 169 (368)
T ss_pred cceeEEECCCCccHHHHHH
Confidence 3468889999999998753
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=49.30 E-value=13 Score=43.30 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHhhcC----CCcceeeecccCCCCcccccCCCceeEEEEEeeeeecceeeecCCCCCCCcceeecCC
Q 002808 122 RHVYDIAAQHVVSGAMDG----INGTIFAYGVTSSGKTHTMHTPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ 197 (878)
Q Consensus 122 eeVY~~~~~plV~~vl~G----yN~tIfAYGqTGSGKTyTM~g~~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~~ 197 (878)
...|.....-++.++.+- -.+-|.-.||||.|||.|+-.-...|. ++.....---|.-|.-
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~---------------~~~~~~kVaiITtDtY 244 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV---------------MLKKKKKVAIITTDTY 244 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH---------------hhccCcceEEEEeccc
Confidence 334444444444444443 155666789999999999853222221 1111111011111211
Q ss_pred --C------eE--ecccEEEEecCHHHHHHHHHH
Q 002808 198 --G------TF--VEGVKEEVVLSPAHALSLIAA 221 (878)
Q Consensus 198 --G------~~--V~gLse~~V~S~ee~~~lL~~ 221 (878)
| .| +-|+.-..|.++.|+...+..
T Consensus 245 RIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 245 RIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred hhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 1 11 456777889999999888754
No 363
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.27 E-value=3.1e+02 Score=32.54 Aligned_cols=211 Identities=21% Similarity=0.249 Sum_probs=100.8
Q ss_pred cccchhhhHHH-HHHHHHhhhhhhhhHHHHhhh----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchh
Q 002808 592 TMDNSEVSQSF-AELAAQLNEKSFELEVKAADN----RIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASY 666 (878)
Q Consensus 592 k~~~~ev~qal-~eL~~q~~eKs~elE~ksadN----~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~ 666 (878)
+...-+++--+ ++---+|..|.--||-|..|. .+--|+=.....|+.+|+.-++.|.+|+-. .+
T Consensus 202 ~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re-qE---------- 270 (502)
T KOG0982|consen 202 KLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE-QE---------- 270 (502)
T ss_pred ccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh-hh----------
Confidence 44444443322 334445555554454444222 223334445557888899999999988744 01
Q ss_pred hhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHH
Q 002808 667 SQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVE 746 (878)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaave 746 (878)
....+-..++-. -.-||.-++-+...|. |+-|+.+-|-|.+|.+--..+++-
T Consensus 271 -------------------lraeE~l~Ee~r---rhrEil~k~eReasle--~Enlqmr~qqleeentelRs~~ar---- 322 (502)
T KOG0982|consen 271 -------------------LRAEESLSEEER---RHREILIKKEREASLE--KENLQMRDQQLEEENTELRSLIAR---- 322 (502)
T ss_pred -------------------hhHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 111111122211 1335555555555443 344566667777777654444443
Q ss_pred HHhhHHHHHHHhhhhhhHHHHHHhhcCCc--c--cccccccccCcccccccccCC-CCChHHHHHHHHHHHHHHHHHH-H
Q 002808 747 LKALSEEVAKLMNHKERLTAELAAAKSSP--T--QRRTSAVRNGRRDGQIKRQNQ-DGSSLDLKRELALSREREVSYE-A 820 (878)
Q Consensus 747 lk~l~~evtkl~~~n~~l~~el~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~re~~~e-~ 820 (878)
||.|+++.+ ..--|++..|.+++..- . -+++- +++=.++.++++. -...+||++||.--+.|-.+++ .
T Consensus 323 lksl~dkla---ee~qr~sd~LE~lrlql~~eq~l~~rm---~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p 396 (502)
T KOG0982|consen 323 LKSLADKLA---EEDQRSSDLLEALRLQLICEQKLRVRM---NDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANP 396 (502)
T ss_pred HHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555433 22222555555554311 0 01110 1111113322221 1145678888776655555555 1
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhHHHHH
Q 002808 821 ALLEKDQQEAELQRKVEESKKREAYLE 847 (878)
Q Consensus 821 ~l~ek~~~e~el~~~~~e~k~~e~~le 847 (878)
.-.---.|+.||..-+++-||.---|+
T Consensus 397 ~rgrsSaRe~eleqevkrLrq~nr~l~ 423 (502)
T KOG0982|consen 397 VRGRSSAREIELEQEVKRLRQPNRILS 423 (502)
T ss_pred ccCchhHHHHHHHHHHHHhccccchhh
Confidence 122222677777777777777655443
No 364
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=49.19 E-value=6.1e+02 Score=31.45 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHH-HHH
Q 002808 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQL-NQK 633 (878)
Q Consensus 555 e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL-~~K 633 (878)
..++.+...|+.+++..+.+....++++.......-. ..=+...+.++..|+. -|..+..+..+++.| ...
T Consensus 258 G~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p---~~l~~~ll~~~~~q~~-----~e~~~~~~~~~~~~l~~~~ 329 (650)
T TIGR03185 258 GDLFEEREQLERQLKEIEAARKANRAQLRELAADPLP---LLLIPNLLDSTKAQLQ-----KEEQSQQNQLTQEELEERD 329 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---HhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777777777544332211 1111122233333333 223444666677777 333
Q ss_pred HHHHHhHH------HHHHHHHHHHHH
Q 002808 634 ICECEGLQ------ETIGFLKQQLND 653 (878)
Q Consensus 634 ~~e~~~lq------eel~~Lk~ql~~ 653 (878)
.|-|..+- ..+..+.+.|..
T Consensus 330 ~~i~~~~~~l~~~~~~~~~l~~~l~~ 355 (650)
T TIGR03185 330 KELLESLPKLALPAEHVKEIAAELAE 355 (650)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 44444331 224455555544
No 365
>PLN03025 replication factor C subunit; Provisional
Probab=49.15 E-value=13 Score=41.50 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.0
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++-||++|+|||++..
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 346669999999999985
No 366
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=49.15 E-value=12 Score=40.70 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=17.2
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|....++-||++|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444457889999999999874
No 367
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=48.94 E-value=9.7 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.| |++.++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 344678877 566779999999874
No 368
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.88 E-value=1.1e+02 Score=29.86 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 598 VSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 598 v~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
|.+...++..+++.+.--++ ..+.........+++.+..++.+|..++..
T Consensus 65 v~qd~~e~~~~l~~r~E~ie----------~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLE----------LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred hhccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566777777776655554 333333344455566666666666666553
No 369
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.88 E-value=1.9e+02 Score=26.97 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=50.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHH
Q 002808 562 KKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQ 641 (878)
Q Consensus 562 ~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lq 641 (878)
..++.|+..-+.+|..|+..+-....-.-....+.|+.+ |-.++..-. --|.++-+++|.+++......-..++
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~----LE~~Le~aL--~~VR~rK~~~l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQ----LEQQLESAL--KRVRSRKDQLLMEQIEELKKKERELE 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHH----HHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555566665554444444445555543 222222111 12667888888888888888888888
Q ss_pred HHHHHHHHHHH
Q 002808 642 ETIGFLKQQLN 652 (878)
Q Consensus 642 eel~~Lk~ql~ 652 (878)
++...|++++.
T Consensus 89 ~en~~L~~~~~ 99 (100)
T PF01486_consen 89 EENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHhc
Confidence 88888888763
No 370
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.86 E-value=6e+02 Score=31.27 Aligned_cols=282 Identities=19% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhh
Q 002808 520 IDLLREQQKILAGEVALHSSALKRLSEE-AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEV 598 (878)
Q Consensus 520 ~dlL~eQlk~~~~Ei~~~ss~lkrL~eq-a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev 598 (878)
+..|+|--..+-++|+.-...+..++.. .....--++++.|+..+..||+.-+.++..|-+.| +....
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I-----------e~Q~i 329 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI-----------ELQGI 329 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCC
Q ss_pred hHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------
Q 002808 599 SQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL----------------------- 655 (878)
Q Consensus 599 ~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~----------------------- 655 (878)
+-+ |+|-...|+..|+..|+.-.+++..|+.++-.++-+...-.
T Consensus 330 S~~-------------dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~ 396 (581)
T KOG0995|consen 330 SGE-------------DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAE 396 (581)
T ss_pred CHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------hhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhh
Q 002808 656 ---------ELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRN 726 (878)
Q Consensus 656 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n 726 (878)
+....-.+...+...-.......+-....-...-+-..-+......+.-|++++|.+..+..+-..++..-
T Consensus 397 ~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~ 476 (581)
T KOG0995|consen 397 NSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKY 476 (581)
T ss_pred HhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhhhhhhhhHHHHHHHHhhHHHHHHH---hhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHH
Q 002808 727 QKLSEESSYAKGLASAAAVELKALSEEVAKL---MNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLD 803 (878)
Q Consensus 727 ~kl~ee~~yak~lasaaavelk~l~~evtkl---~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (878)
+=+-+| |-++--++..|++-|-+++-.| |++--+.+.++.-+-+.-.+| -+.+
T Consensus 477 ~~~k~e---~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~---------------------~~~~ 532 (581)
T KOG0995|consen 477 ELKKEE---AEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDR---------------------MVAT 532 (581)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhh
Q 002808 804 LKRELALS-REREVSYEAALLEKDQQEAELQRKVEESKKREAYLENE 849 (878)
Q Consensus 804 ~~~e~~~~-~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~ 849 (878)
.-.|.+.+ +|=.+.|.+++--|...+..|.-..-+--.-=+.|++.
T Consensus 533 ~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~~~~ei~~~ 579 (581)
T KOG0995|consen 533 GEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHKECEEIEKA 579 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 371
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=48.79 E-value=72 Score=33.99 Aligned_cols=69 Identities=26% Similarity=0.345 Sum_probs=48.8
Q ss_pred hhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 002808 762 ERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKK 841 (878)
Q Consensus 762 ~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~ 841 (878)
.+|..||.+.|. +++..+...++.+. .++..|+..|..+-+|=.+||+-++.=+|+ =+||+.-
T Consensus 31 ~~lE~EL~~lr~--qq~~~~~~~~~~~~---------~~~~~L~~~LrEkEErILaLEad~~kWEqk------YLEEs~m 93 (205)
T PF12240_consen 31 TRLERELESLRA--QQRQGNSSGSSSPS---------NNASNLKELLREKEERILALEADMTKWEQK------YLEESAM 93 (205)
T ss_pred HHHHHHHHHHHH--hhccCCCCCCCCCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 578899988884 33433322222222 578899999999999999999988765542 3888888
Q ss_pred hHHHHH
Q 002808 842 REAYLE 847 (878)
Q Consensus 842 ~e~~le 847 (878)
|+..++
T Consensus 94 rq~a~d 99 (205)
T PF12240_consen 94 RQFAMD 99 (205)
T ss_pred HHHHHH
Confidence 887653
No 372
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=48.29 E-value=11 Score=42.47 Aligned_cols=107 Identities=16% Similarity=0.288 Sum_probs=56.3
Q ss_pred eccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc-----CC-CceeEEEEEeeeeecceeee-cC
Q 002808 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVND-LL 183 (878)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~ef~V~vS~lEIYnE~I~D-LL 183 (878)
||.+++.+..-..+.+. +..+ ...+..|+-+|.+||||++.-. ++ ...-.|.|.|-.+..+.+-. |+
T Consensus 5 ~~~liG~S~~~~~~~~~-----i~~~-a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQ-----VSRL-APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred cCccEECCHHHHHHHHH-----HHHH-hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 55555544433333332 2222 3567889999999999998753 22 12223444444444332222 22
Q ss_pred CCCC---------CCcceeecCCC-eEecccEEEEecCHHHHHHHHHHhh
Q 002808 184 NPAG---------QNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (878)
Q Consensus 184 ~p~~---------~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (878)
.... ..-.+....+| .|+.++......-...++.+|..|.
T Consensus 79 g~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred cccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 2110 01112233345 5777777777666667777776654
No 373
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=48.03 E-value=3.9e+02 Score=28.82 Aligned_cols=200 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh----cccCcccc
Q 002808 520 IDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM----TSHNTMDN 595 (878)
Q Consensus 520 ~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~----~~~~k~~~ 595 (878)
|.-+..+++...+.+......|+...+.+. +...++..|+.-|....+.+...|.|+..... .+..-.+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~------~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~ 76 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAE------KAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADES 76 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh
Q 002808 596 SEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICEC----EGLQETIGFLKQQLNDALELRNFSPLASYSQRFA 671 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~----~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~ 671 (878)
......|+-=....++|.-+||..-++-....++...|..+. ..++.++....+.+..
T Consensus 77 er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~------------------ 138 (237)
T PF00261_consen 77 ERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA------------------ 138 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------
Q ss_pred hccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhh-hhhhhhhhhH------HHH
Q 002808 672 EAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSE-ESSYAKGLAS------AAA 744 (878)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~e-e~~yak~las------aaa 744 (878)
-...|.+|..++..+...-..|++.-.|..+ |-.|-..+.. .|-
T Consensus 139 -----------------------------~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 139 -----------------------------AESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------hchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 745 VELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 745 velk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
.-.-..--.|.+|-.++.+|..+|...+
T Consensus 190 ~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 190 NRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=47.94 E-value=7.1e+02 Score=31.90 Aligned_cols=217 Identities=17% Similarity=0.240 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccch
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS 596 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ 596 (878)
..++..|+...+....|+..-...++++ |..|.+++.++....+.|..|--.+-.-|....+-..-.
T Consensus 113 ~~q~~rl~~E~er~~~El~~lr~~lE~~-------------q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~ 179 (775)
T PF10174_consen 113 QEQFERLQAERERLQRELERLRKTLEEL-------------QLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDN 179 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhh
Confidence 4566666666677777776655555444 556777777777777777776666632222221111112
Q ss_pred hhhHHHHHHHHHhhhhhhhhHHHH--------------------hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 597 EVSQSFAELAAQLNEKSFELEVKA--------------------ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 597 ev~qal~eL~~q~~eKs~elE~ks--------------------adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
.+...+.++-..+++---.+|.+. +.-..||--|..|-+.+.+++..|..|+..+.-+-.
T Consensus 180 ~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~ 259 (775)
T PF10174_consen 180 EALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRS 259 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233333333333332222233333 333467777777888888887766666666544211
Q ss_pred hccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhh
Q 002808 657 LRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYA 736 (878)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~ya 736 (878)
....+. .+ .++.....+.+ .+....--+.|+.+++++.+=..+...|..+..-+.+...=.
T Consensus 260 ~~~~~~---------------~~--r~~~~k~le~~--~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~ 320 (775)
T PF10174_consen 260 RGELSE---------------AD--RDRLDKQLEVY--KSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM 320 (775)
T ss_pred cccccc---------------cc--hHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 101100 00 01100000000 001111123477777766666555556666665555554332
Q ss_pred hhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 737 KGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 737 k~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
++ -|-.|-+.++..-.+++.|-+|+.+.|
T Consensus 321 r~-------hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 321 RQ-------HIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 32 244566666666677777766666665
No 375
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.66 E-value=73 Score=34.63 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=30.5
Q ss_pred HHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 547 EAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 547 qa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
+|.+--|--.|+.+|.+++.||+..+-|++.|++|+.
T Consensus 157 ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 157 KAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444457999999999999999999999999994
No 376
>PF14282 FlxA: FlxA-like protein
Probab=47.43 E-value=69 Score=30.51 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 627 QEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 627 qEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
+++...+...+..|+..|..|+.+....
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555556666666666665443
No 377
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=47.29 E-value=3.7e+02 Score=28.44 Aligned_cols=84 Identities=25% Similarity=0.302 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHH-hhhHHHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKA-ADNRIIQEQLNQKIC 635 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ks-adN~~lqEqL~~K~~ 635 (878)
-..|+..|...+...+++++.++++|-+ --.++..+-.++- .|. .-++.|. .+-..|+.+|.....
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~---------~~~el~k~~~~l~-~L~---~L~~dknL~eReeL~~kL~~~~~ 132 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKD---------KDEELLKTKDELK-HLK---KLSEDKNLAEREELQRKLSQLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHH---HHHHcCCchhHHHHHHHHHHHHH
Confidence 3467777777777777888888887732 1122222111111 000 0012222 445667777777777
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 002808 636 ECEGLQETIGFLKQQLND 653 (878)
Q Consensus 636 e~~~lqeel~~Lk~ql~~ 653 (878)
.+.+-...|+.|.-|+.-
T Consensus 133 ~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 133 KLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777643
No 378
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=47.28 E-value=88 Score=28.44 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=38.8
Q ss_pred HHHHHhhhHHHHHhhhHHHHHHHH------HHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002808 523 LREQQKILAGEVALHSSALKRLSE------EAARNPQKEQLQVEIKKLRDEIKGKNDQIALLE 579 (878)
Q Consensus 523 L~eQlk~~~~Ei~~~ss~lkrL~e------qa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le 579 (878)
|-+=|+-+-+|+.+.+--...|.. .+...+....|..+|..|.+.++.|-+||-.|-
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555444444422 255666667799999999999999999998774
No 379
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=47.14 E-value=3.3e+02 Score=27.83 Aligned_cols=76 Identities=26% Similarity=0.266 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHH
Q 002808 559 VEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECE 638 (878)
Q Consensus 559 ~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~ 638 (878)
.+|..+.-.+-..+.|++.++.++.. ++++.|.+..+ +-|----||..|.+++.+++.++.
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~-------ke~lge~L~~i------------DFeqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQ-------KEELGEGLHLI------------DFEQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCcccHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777742 55666665542 233334688889999999988888
Q ss_pred hHHHHHHHHHHHHHH
Q 002808 639 GLQETIGFLKQQLND 653 (878)
Q Consensus 639 ~lqeel~~Lk~ql~~ 653 (878)
.|...+..-=+.|++
T Consensus 67 ~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 67 KLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887766665555555
No 380
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=47.04 E-value=2.5e+02 Score=35.44 Aligned_cols=94 Identities=28% Similarity=0.326 Sum_probs=55.1
Q ss_pred HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHH
Q 002808 548 AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQ 627 (878)
Q Consensus 548 a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lq 627 (878)
+...|+.+ .+..|..|++||+.+ |.+.+. -.+++++..-|...+.... +.=++|-| .-.+.|+
T Consensus 639 ~~~~p~~~-~k~KIe~L~~eIkkk----------Ie~av~----ss~LK~k~E~Lk~Evaka~-~~pd~~~k-~kieal~ 701 (762)
T PLN03229 639 AEQTPPPN-LQEKIESLNEEINKK----------IERVIR----SSDLKSKIELLKLEVAKAS-KTPDVTEK-EKIEALE 701 (762)
T ss_pred cccCCChh-hHHHHHHHHHHHHHH----------HHHHhc----chhHHHHHHHHHHHHHhcC-CCCCcchH-HHHHHHH
Confidence 44556554 467777777777765 222221 2234444443322221111 22234444 5577888
Q ss_pred HHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhc
Q 002808 628 EQLNQKICEC---EGLQETIGFLKQQLNDALELR 658 (878)
Q Consensus 628 EqL~~K~~e~---~~lqeel~~Lk~ql~~~~~~~ 658 (878)
-|+.|+..+- .+|++....|+..|..+.+..
T Consensus 702 ~qik~~~~~a~~~~~lkek~e~l~~e~~~~~~~~ 735 (762)
T PLN03229 702 QQIKQKIAEALNSSELKEKFEELEAELAAARETA 735 (762)
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHHHHHHhhccc
Confidence 9999988764 468888888999998877653
No 381
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=46.99 E-value=12 Score=43.83 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=19.4
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|..+++|.| |++.++||||||.+..
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~~ 56 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGFT 56 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHHH
Confidence 345677877 6788899999998743
No 382
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.95 E-value=5.5e+02 Score=30.27 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccc
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDN 595 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~ 595 (878)
..+.+..+.+.|...-.+...-.-.+++|+.+ ++.+++-+..-+++-+.....||.++-|..+--.+ |.
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~---------~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~--Ei 278 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQ---------YQREYQFILEALQEERYRYERLEEQLNDLTELHQN--EI 278 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 34556666666666555555555556677665 67788888888888888888899999776665333 44
Q ss_pred hhhhHHH----HHHHHHhhhhhhhh
Q 002808 596 SEVSQSF----AELAAQLNEKSFEL 616 (878)
Q Consensus 596 ~ev~qal----~eL~~q~~eKs~el 616 (878)
.-+-|.| ++++=|++|++.|+
T Consensus 279 ~~LKqeLa~~EEK~~Yqs~eRaRdi 303 (395)
T PF10267_consen 279 YNLKQELASMEEKMAYQSYERARDI 303 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 4444544 33444444444333
No 383
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=46.22 E-value=12 Score=44.91 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.6
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-||++|+|||++..
T Consensus 218 GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAK 234 (512)
T ss_pred ceEEECCCCCcHHHHHH
Confidence 47889999999998764
No 384
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=46.08 E-value=15 Score=45.54 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=21.3
Q ss_pred HHHHHHHHhhc-----CCCcceeeecccCCCCccccc
Q 002808 128 AAQHVVSGAMD-----GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 128 ~~~plV~~vl~-----GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++..++..+.. |.+..|+. -+||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 45666666665 34455544 499999999996
No 385
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.81 E-value=14 Score=42.03 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=25.9
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhhcC-CCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDG-INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~G-yN~tIfAYGqTGSGKTyTM~ 159 (878)
+||.|.+ |+.+-. .+...+..| ..-.++-||+.|+|||++..
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHHH
Confidence 5666664 333333 233333333 34567889999999999874
No 386
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=45.45 E-value=58 Score=31.41 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=46.4
Q ss_pred ccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 593 MDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 593 ~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
++.+++-.++..|-.|+++-+.+++ .|+.+|.....|+..|+=|...|++.|.+
T Consensus 1 mdKkeiFd~v~~le~~l~~l~~el~-------~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 1 MDKKEIFDQVDNLEEQLGVLLAELG-------GLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4678888888999999887766664 58899999999999999999999999976
No 387
>PHA02244 ATPase-like protein
Probab=45.35 E-value=19 Score=41.79 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=26.1
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..||.-|-... ..+......+...+-.|.+ |+-+|+||+|||+...
T Consensus 92 ~~~d~~~ig~s---p~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 92 SGIDTTKIASN---PTFHYETADIAKIVNANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred hhCCCcccCCC---HHHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHHH
Confidence 44555553333 3333333344443344554 5568999999998875
No 388
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.23 E-value=18 Score=40.78 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=15.2
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456677999999999985
No 389
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=45.16 E-value=15 Score=41.08 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.7
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 467789999999999986
No 390
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=45.11 E-value=21 Score=41.04 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=28.5
Q ss_pred eEE-ec-cccCCCCcchhHHHHHHHHHHHHhhcC---CCcceeeecccCCCCccccc
Q 002808 108 AYA-YD-RVFGPTTTTRHVYDIAAQHVVSGAMDG---INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~-FD-~VF~~~atQeeVY~~~~~plV~~vl~G---yN~tIfAYGqTGSGKTyTM~ 159 (878)
.|. || .||+- +++-+.++.- +.....| -+..|.-.|++|||||....
T Consensus 45 ~y~~F~~~~~G~----~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla~ 96 (361)
T smart00763 45 RYRFFDHDFFGM----EEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLVE 96 (361)
T ss_pred eccccchhccCc----HHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 344 45 67774 4444444432 3333343 34667889999999998864
No 391
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=45.08 E-value=21 Score=38.75 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=27.4
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhc-C-CCcceeeecccCCCCccccc
Q 002808 115 FGPTTTTRHVYDIAAQHVVSGAMD-G-INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 115 F~~~atQeeVY~~~~~plV~~vl~-G-yN~tIfAYGqTGSGKTyTM~ 159 (878)
|++-..|+.+-.. .+.++..+.. | .-..++-||++|.|||..-.
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHHH
Confidence 4445567888764 4666776653 2 23457789999999987754
No 392
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=44.89 E-value=1.9e+02 Score=27.23 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 002808 600 QSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGF 646 (878)
Q Consensus 600 qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~ 646 (878)
+...+...+++.+...++ .+...|..++..+..++.+++.+|..
T Consensus 59 ~~~~ea~~~Le~~~e~le---~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 59 QEKEEARTELKERLETIE---LRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred ccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544333332 22334444444444444444444433
No 393
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.83 E-value=7.4e+02 Score=31.20 Aligned_cols=130 Identities=23% Similarity=0.205 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchh
Q 002808 518 DQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSE 597 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~e 597 (878)
.+.++.-.-++++.++|.---.-++|-.+|+..- .-++++.+..++. ...-+.|++.+++++..+.+-...+..+.+
T Consensus 172 ~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~--~q~~~~~~~~l~e-~~~~~qq~a~~~~ql~~~~ele~i~~~~~d 248 (716)
T KOG4593|consen 172 WEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEE--NQKIQELQASLEE-RADHEQQNAELEQQLSLSEELEAINKNMKD 248 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhhhHHHHHHHHHHH
Confidence 3455555556666665554333333333332111 1112233333322 233356777777777666555555556667
Q ss_pred hhHHHHHHHHHhhhhhhhhHHHHhhh----HHHHHHHHH---HHHHHHhHHHHHHHHHHHH
Q 002808 598 VSQSFAELAAQLNEKSFELEVKAADN----RIIQEQLNQ---KICECEGLQETIGFLKQQL 651 (878)
Q Consensus 598 v~qal~eL~~q~~eKs~elE~ksadN----~~lqEqL~~---K~~e~~~lqeel~~Lk~ql 651 (878)
-+|-+++|-.-|.+-.-|+- +.++| ..|||++.. |..+...|+.++..|+-+-
T Consensus 249 qlqel~~l~~a~~q~~ee~~-~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN 308 (716)
T KOG4593|consen 249 QLQELEELERALSQLREELA-TLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELEN 308 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777776666554444432 12333 345555443 3344444555544444443
No 394
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.81 E-value=5.2e+02 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhhhhH
Q 002808 542 KRLSEEAARNPQKEQLQVEIKKLRDEIKGKND 573 (878)
Q Consensus 542 krL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~ 573 (878)
|-+...|--+++...+..|+.-|++.+.+..+
T Consensus 95 kAMv~naQLDNek~~l~yqvd~Lkd~lee~eE 126 (302)
T PF09738_consen 95 KAMVSNAQLDNEKSALMYQVDLLKDKLEELEE 126 (302)
T ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666677777766666533
No 395
>PRK04195 replication factor C large subunit; Provisional
Probab=44.71 E-value=14 Score=43.67 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=21.7
Q ss_pred HHHHHHhhcCC-CcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (878)
..++.....|. ...++-||++|+|||++..
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34444444554 4568889999999999985
No 396
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=44.63 E-value=18 Score=44.80 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||..+-.-...-+-.|.|.||+.-|.+|||||.|..
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 110 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTK 110 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHH
Confidence 46776444333333347999999999999999999973
No 397
>PF14992 TMCO5: TMCO5 family
Probab=44.34 E-value=5.1e+02 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhccc
Q 002808 561 IKKLRDEIKGKNDQIALLEKQIADSIMTSH 590 (878)
Q Consensus 561 ~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~ 590 (878)
-+.+-.-|++++.-|..||+-|+.+.....
T Consensus 20 Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~ 49 (280)
T PF14992_consen 20 NQSLLQKIQEKEGAIQSLEREITKMDHIAD 49 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 345556677788888888888876655433
No 398
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=44.05 E-value=14 Score=44.45 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=29.6
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCcccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..+||.+++.... ++.+...++.+....|+-||++|+|||+.-
T Consensus 61 p~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 61 PKSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred cCCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3578888775432 233333445666778888999999999875
No 399
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.00 E-value=99 Score=27.48 Aligned_cols=64 Identities=31% Similarity=0.402 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
.++|..|.-+...++...+-.++.|..|.-|= ..|+--|-..-+|..+|..+|+.|.+||...+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER-------d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRER-------DSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777777777888888888888888887764 23344445566788888888999988876543
No 400
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=43.92 E-value=12 Score=45.01 Aligned_cols=110 Identities=16% Similarity=0.269 Sum_probs=55.7
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc-----CCCc-eeEEEEEeeeeecceeee-
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TPNR-EFLLRVSYLEIYNEVVND- 181 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~~~-ef~V~vS~lEIYnE~I~D- 181 (878)
|.||.+++....-..+.+ .+. .+...+..|+-+|.+|+||++.-. ++.. .-.|.|-|-.+-.+.+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~-----~i~-~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~llese 282 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRA-----LVR-LYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAE 282 (526)
T ss_pred cchhheeeCCHHHHHHHH-----HHH-HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHH
Confidence 666666654332222222 222 245678899999999999988753 2111 112233332222211111
Q ss_pred cCCCCC---------CCcceee-cCCC-eEecccEEEEecCHHHHHHHHHHhhh
Q 002808 182 LLNPAG---------QNLRIRE-DSQG-TFVEGVKEEVVLSPAHALSLIAAGEE 224 (878)
Q Consensus 182 LL~p~~---------~~L~Ire-d~~G-~~V~gLse~~V~S~ee~~~lL~~G~~ 224 (878)
|+.... ....+-+ ..+| .|+.++...+..-...++.+|..+.-
T Consensus 283 LFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~ 336 (526)
T TIGR02329 283 LFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREV 336 (526)
T ss_pred hcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcE
Confidence 221100 1111122 2345 67888888777767777777766543
No 401
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.84 E-value=1.1e+02 Score=36.06 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 626 IQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 626 lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
+.+.+.+...++.+|++++..|+++|...
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455566667777777777777664
No 402
>PF05729 NACHT: NACHT domain
Probab=43.77 E-value=10 Score=36.65 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-+|.+|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 46789999999999985
No 403
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=43.73 E-value=14 Score=43.85 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCCCccceeEEeeCCCCCChHHHHHHHHHHH--Hhccccccccc
Q 002808 330 LSGHGRVSLICTVTPSSSSSEETHNTLKFAH--RAKHIEILAAQ 371 (878)
Q Consensus 330 LGGnskT~mIa~ISPs~~~~eETLsTLrFAs--Rak~Ikn~~~~ 371 (878)
|.-..+..+|||++..... +..|.+|- |..-|...|.-
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p~~ 359 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEPGF 359 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecCCC
Confidence 4556889999999988754 44566554 45555555533
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=43.70 E-value=23 Score=41.84 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.3
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
-..|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4568889999999999985
No 405
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.69 E-value=6.6e+02 Score=30.25 Aligned_cols=200 Identities=25% Similarity=0.231 Sum_probs=104.8
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhcc
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAK 674 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~ 674 (878)
..|-+|.|+|- +-|||-+.-|. -+|+.-|-+++...|.+.-|+..|..||=....
T Consensus 302 s~Eslqpleed-maLNEvL~kLk---~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~k--------------------- 356 (527)
T PF15066_consen 302 SFESLQPLEED-MALNEVLQKLK---HTNRKQQNRIQDLQCSNLYLEKKVKELQMKITK--------------------- 356 (527)
T ss_pred hhhccCCcHHH-HHHHHHHHHHH---hhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhh---------------------
Confidence 45667777543 66776655553 477888888888889999999999888766422
Q ss_pred ccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhc----------hhhhhhhhhhhhhHHHH
Q 002808 675 SLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQ----------KLSEESSYAKGLASAAA 744 (878)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~----------kl~ee~~yak~lasaaa 744 (878)
+.+--|++.++ ..-||+|--++-+++=||..++..+| |...|+.-+|+ ..-
T Consensus 357 -----------QqvfvDiinkL-----k~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKe---tLq 417 (527)
T PF15066_consen 357 -----------QQVFVDIINKL-----KENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKE---TLQ 417 (527)
T ss_pred -----------hhHHHHHHHHH-----HHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHH
Confidence 01111333332 22344554455555555666665555 44555555554 233
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002808 745 VELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLE 824 (878)
Q Consensus 745 velk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~e 824 (878)
.|||.+-..-..|- +|--+|+----.+..++-- --...++.-+.......||+||- +---.||+-.=.|
T Consensus 418 lelkK~k~nyv~LQ---Ery~~eiQqKnksvsqclE------mdk~LskKeeeverLQ~lkgelE--kat~SALdlLkrE 486 (527)
T PF15066_consen 418 LELKKIKANYVHLQ---ERYMTEIQQKNKSVSQCLE------MDKTLSKKEEEVERLQQLKGELE--KATTSALDLLKRE 486 (527)
T ss_pred HHHHHHhhhHHHHH---HHHHHHHHHhhhHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 44444433333221 2222222211111111100 00011121122223455666664 2222466666679
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhh
Q 002808 825 KDQQEAELQRKVEESKKREAYLENE 849 (878)
Q Consensus 825 k~~~e~el~~~~~e~k~~e~~len~ 849 (878)
|+-+|.|+..--+|-.+||..=.-|
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~E 511 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEE 511 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999988888888888744333
No 406
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=43.48 E-value=11 Score=46.87 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=30.6
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-HhhcCC----CcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI----NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.|-+....-+.+.+.+..|+-. .++..+ ...|+-||++|+|||+.+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHH
Confidence 367777665544444454444433322 222222 2458899999999998874
No 407
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=43.27 E-value=2.6e+02 Score=25.45 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHH
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKIC 635 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~ 635 (878)
+.+.++.....+....+.++..|+..+.+....-.... . .+.- .++-....-...|...+.....
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~-------------~~~~~~~~~~~~l~~~i~~~~~ 66 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSV-------------AQLRNYQRYISALEQAIQQQQQ 66 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888865533322211 0 1111 1122222333445555555556
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 002808 636 ECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 636 e~~~lqeel~~Lk~ql~~~~ 655 (878)
.+..++.++..+++.|..+.
T Consensus 67 ~~~~~~~~~~~~r~~l~~a~ 86 (123)
T PF02050_consen 67 ELERLEQEVEQAREELQEAR 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666777776665533
No 408
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.19 E-value=1.1e+02 Score=34.79 Aligned_cols=121 Identities=26% Similarity=0.361 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQV 700 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (878)
--.|.+-|-+.+...+..+|+.-.+.|+.||-++-+- + ++. +. ..+|. + .......++- +.
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v--f------~k~----k~--~~q~L--E-~li~~~~EEn--~~ 145 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV--F------MKT----KG--DIQHL--E-GLIRHLREEN--QC 145 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--H------HHh----cc--hHHHH--H-HHHHHHHHHH--HH
Confidence 3456677777777778888888888888888664431 1 111 10 00011 0 0111111111 12
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHH---H-----------HHHHhhHHHHHHHhhhhhh
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAA---A-----------VELKALSEEVAKLMNHKER 763 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaa---a-----------velk~l~~evtkl~~~n~~ 763 (878)
.+...+.|+|+.-|-.|+...| |+-|+|+-.|--+|++-- - +-+-+|--.|-.||++=.-
T Consensus 146 lqlqL~~l~~e~~Ekeeesq~L---nrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 146 LQLQLDALQQECGEKEEESQTL---NRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHhHHHHHHHHhHhHHHHHHH---HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888877766 777899999999988632 2 2245677778888876443
No 409
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=43.18 E-value=47 Score=27.60 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 555 e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
+.+...+.+.+.++..++.+|+.||.+|-
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD 31 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYID 31 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777899999999999999999999994
No 410
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=42.98 E-value=9.7 Score=36.37 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.5
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
++-||++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4569999999999874
No 411
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=42.97 E-value=2.6e+02 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=14.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002808 618 VKAADNRIIQEQLNQKICECEGLQETIGFL 647 (878)
Q Consensus 618 ~ksadN~~lqEqL~~K~~e~~~lqeel~~L 647 (878)
.+.++...|+.+|....+++..+++.|..|
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 412
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.92 E-value=6.4e+02 Score=31.74 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHH---HH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLN---QK 633 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~---~K 633 (878)
+-.+...++.+++....-+..|+.+..+-+..+.....+ ...--++.+-.....-.++++---+.+-...|++. +-
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql-~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~ 273 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQL-SLSEELEAINKNMKDQLQELEELERALSQLREELATLREN 273 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555666666665544443321111 11112344444444555666666666666666665 33
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 002808 634 ICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 634 ~~e~~~lqeel~~Lk~ql~~~ 654 (878)
.....-||+|+..|+..|.++
T Consensus 274 ~~tv~~LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 274 RETVGLLQEELEGLQSKLGRL 294 (716)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 333444556666666555443
No 413
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.90 E-value=12 Score=41.28 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.4
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
+-.|+-+|++|+|||-++.
T Consensus 33 ~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp TEEEEEESSTTSSHHHHHH
T ss_pred CCcEEEECCCCCchhHHHH
Confidence 5677889999999999884
No 414
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=11 Score=42.84 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=15.0
Q ss_pred CcceeeecccCCCCcccc
Q 002808 141 NGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM 158 (878)
-+-|+..|+||||||+--
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 356888999999999864
No 415
>PF13166 AAA_13: AAA domain
Probab=42.62 E-value=7.5e+02 Score=30.63 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=12.9
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
..-+-||..|||||.--
T Consensus 17 ~~n~IYG~NGsGKStls 33 (712)
T PF13166_consen 17 KINLIYGRNGSGKSTLS 33 (712)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 33456999999998654
No 416
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.61 E-value=16 Score=43.03 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=19.5
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|..++.|.+ +++..+||||||.+..
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y~ 44 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCYQ 44 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHHH
Confidence 3445678886 5667899999998753
No 417
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.54 E-value=1.1e+03 Score=32.33 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHH
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQL 557 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~i 557 (878)
..+|..|.+++..++.+++...+-+.+|......-|....+
T Consensus 748 ~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL 788 (1353)
T TIGR02680 748 DARLAAVDDELAELARELRALGARQRALADELAGAPSDRSL 788 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Confidence 55777888888888888888888888888887777765443
No 418
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=42.36 E-value=15 Score=46.32 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=20.9
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..+.+|.|+.|+| |||||||-+-|
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHHH
Confidence 34567999999987 99999999865
No 419
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=41.75 E-value=5.8e+02 Score=29.11 Aligned_cols=70 Identities=36% Similarity=0.478 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccc
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRT 780 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~ 780 (878)
+-.|+|+|-|-+.+| ||+-.|-|.|+-|. ...--.|..|+.+-.-|..|||-+|-.++ |..
T Consensus 33 KV~EVEKLsqTi~EL---------------EEaiLagGaaaNav---rdYqrq~~elneEkrtLeRELARaKV~aN-RVA 93 (351)
T PF07058_consen 33 KVLEVEKLSQTIREL---------------EEAILAGGAAANAV---RDYQRQVQELNEEKRTLERELARAKVSAN-RVA 93 (351)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhh
Confidence 478999999999987 56777777666665 45556788888888899999999997763 433
Q ss_pred cccccCccc
Q 002808 781 SAVRNGRRD 789 (878)
Q Consensus 781 ~~~~~~~~~ 789 (878)
..+-|.-+|
T Consensus 94 ~vvANEWKD 102 (351)
T PF07058_consen 94 TVVANEWKD 102 (351)
T ss_pred hhhcccccc
Confidence 333333333
No 420
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=41.68 E-value=6.6e+02 Score=30.58 Aligned_cols=133 Identities=18% Similarity=0.250 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCccc
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAA--RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMD 594 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~--~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~ 594 (878)
...+++|+|-..++++=|+....-|+.|..+-. ..+=+ + +.+-|..-|.+.+.++..=++.-.+.+-.=.
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld--~--qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q---- 407 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLD--L--QEQTLNLRLSEAKNEWESDERKSLEKLDQWQ---- 407 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 457889999999999999988888888888822 22222 2 2223333344444444444444433332211
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhhc
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKI-CECEGLQETIGFLKQQLNDALELR 658 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~-~e~~~lqeel~~Lk~ql~~~~~~~ 658 (878)
.++-..+-++-.-.|+=-++++..+.-+..++.+++.|. +|-+..+.+|..+++-|+..|...
T Consensus 408 -~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssv 471 (531)
T PF15450_consen 408 -NEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSV 471 (531)
T ss_pred -HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333333334334557788888889999999887 578889999999999998877643
No 421
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=41.63 E-value=12 Score=38.49 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=19.1
Q ss_pred HHhhcCC---CcceeeecccCCCCccccc
Q 002808 134 SGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 134 ~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (878)
|.++.|- ...+.-||++|||||....
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3445443 5678889999999998764
No 422
>PRK14974 cell division protein FtsY; Provisional
Probab=41.47 E-value=25 Score=40.00 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.2
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|.-.|++|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3578889999999999985
No 423
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=41.36 E-value=7.8 Score=48.29 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCcccccCCCceeEEEEEeeeeecceeeecCCCCCCC
Q 002808 120 TTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPNREFLLRVSYLEIYNEVVNDLLNPAGQN 189 (878)
Q Consensus 120 tQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~~ef~V~vS~lEIYnE~I~DLL~p~~~~ 189 (878)
.|...++.+. ..+ .|+ .+.+-+|.|||||| |||-+.|-+.|...++-
T Consensus 202 ~Q~~a~~~i~----~~~-~~~-~~~Ll~GvTGSGKT-----------------EvYl~~i~~~L~~Gkqv 248 (730)
T COG1198 202 EQQAAVEAIL----SSL-GGF-APFLLDGVTGSGKT-----------------EVYLEAIAKVLAQGKQV 248 (730)
T ss_pred HHHHHHHHHH----Hhc-ccc-cceeEeCCCCCcHH-----------------HHHHHHHHHHHHcCCEE
Confidence 4555555433 333 444 55566899999999 88888888877655443
No 424
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=41.03 E-value=21 Score=38.80 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 128 AAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 128 ~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+...++..+..|. -|+-+|++|+|||....
T Consensus 10 l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 10 VTSRALRYLKSGY--PVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHHHhcCC--eEEEEcCCCCCHHHHHH
Confidence 3344455555555 45568999999999875
No 425
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.00 E-value=3.8e+02 Score=31.56 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCc------hHHHHHHHHHHHH----------HHhhhhHHHHHHHHH
Q 002808 518 DQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQ------KEQLQVEIKKLRD----------EIKGKNDQIALLEKQ 581 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~------~e~iq~e~~~l~~----------Ei~~k~~qi~~Le~~ 581 (878)
.++..+.+|+..+..++......++-+.++...... +..++.+++.++. ++...+.+|..|+..
T Consensus 172 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 251 (457)
T TIGR01000 172 KTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKS 251 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhcccCcccchhhhHHHHHHHHHhhh------hhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002808 582 IADSIMTSHNTMDNSEVSQSFAELAAQLNE------KSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 582 i~~s~~~~~~k~~~~ev~qal~eL~~q~~e------Ks~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~ 652 (878)
| .+....+.++..+..- ...-...+......+.++|.+...++.+++..+..++.+|.
T Consensus 252 i-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 252 I-------------ASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred H-------------HHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 426
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=40.93 E-value=23 Score=43.97 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHh-hcCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||..+- .....+ -.|.|.||+.-|.+|||||.|..
T Consensus 69 PHifaiA~-~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 69 PHVFAIAD-AAYRAMINEGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred CCHHHHHH-HHHHHHHHcCCCceEEEECCCCCCchhHHH
Confidence 35665333 333333 36999999999999999999973
No 427
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.78 E-value=14 Score=45.83 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.1
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++.+|+||||||.+..
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 458899999999998764
No 428
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=40.72 E-value=17 Score=45.55 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.8
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|--..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 3444578889999999999875
No 429
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=40.60 E-value=17 Score=47.64 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCcceeeecccCCCCcccc
Q 002808 126 DIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 126 ~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++..++..+..|...+++. .+||||||+||
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~ta 450 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTA 450 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHH
No 430
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=40.30 E-value=2.2e+02 Score=27.33 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
++.+++.++.+++.-..+|..|+..|.
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~ 30 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIA 30 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666654
No 431
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=40.28 E-value=23 Score=43.91 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||. ++......++ .|.|.||+.-|.+|||||.+..
T Consensus 67 PHifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 104 (679)
T cd00124 67 PHVFA-IADRAYRNMLRDRRNQSIIISGESGAGKTENTK 104 (679)
T ss_pred CCHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 45776 3444444444 5999999999999999999973
No 432
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=40.07 E-value=8.7e+02 Score=30.65 Aligned_cols=230 Identities=27% Similarity=0.297 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHH---hhh-HHHHHHHHHHHH
Q 002808 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKA---ADN-RIIQEQLNQKIC 635 (878)
Q Consensus 560 e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ks---adN-~~lqEqL~~K~~ 635 (878)
+++.++..|...+.|--.+=++|....+... -....+.. +...+-+|..|++.|- -+| |.+.=++..+-.
T Consensus 514 elKk~qedi~~~k~qee~~~kqie~Lee~~~---~Lrneles---~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~k 587 (786)
T PF05483_consen 514 ELKKQQEDINNSKKQEEKMLKQIENLEETNT---QLRNELES---VKEELKQKGEEVKCKLDKSEENARSIECEILKKEK 587 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHH
Confidence 5666666666665544444444433222211 12222222 2333334444666543 333 556667777777
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhc-hhhHHHHHHHHHHHHHHHHhHH
Q 002808 636 ECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDI-NEDSRLQVQAAEIEELNRKVTE 714 (878)
Q Consensus 636 e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~e~e~lk~~~~~ 714 (878)
.+.-+...+..|+.|...-... +.. .+ +.+...+. +..+.++-. .-+.++..+..|++.+|+.+.+
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~--iee--Lq-qeNk~LKK--------k~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKN--IEE--LQ-QENKALKK--------KITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH--HHH--HH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7777777777777776442110 000 00 00000000 000000000 0012333344444444444433
Q ss_pred HhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccc
Q 002808 715 LTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKR 794 (878)
Q Consensus 715 l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (878)
-+ -.|-|+|.+--+-| -+|-+||-|+ |+.++=|
T Consensus 655 ~~----------------~~~~keie~K~~~e-~~L~~EveK~-----k~~a~EA------------------------- 687 (786)
T PF05483_consen 655 ET----------------DKYQKEIESKSISE-EELLGEVEKA-----KLTADEA------------------------- 687 (786)
T ss_pred HH----------------HHHHHHHHHhhhhH-HHHHHHHHHH-----HHHHHHH-------------------------
Confidence 22 25788887765555 5677777754 4443322
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHhh
Q 002808 795 QNQDGSSLDLKRELALSREREVSYEAALLEK------------DQQEAELQRKVEESKKREAYLENELANMWVLVAKLKK 862 (878)
Q Consensus 795 ~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek------------~~~e~el~~~~~e~k~~e~~len~lanmw~lvaklkk 862 (878)
--+++|...+||---|==-||||| |.-=.++.+|=.|+=-..+.||.||.|.-.=+.-||+
T Consensus 688 -------vK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~ 760 (786)
T PF05483_consen 688 -------VKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKK 760 (786)
T ss_pred -------HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 123777777777765555566665 3333444555556556678999999998766665554
No 433
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=39.99 E-value=25 Score=43.82 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||.. +......++ .|.|-||+.-|.+|||||.|..
T Consensus 75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 456763 333333333 6899999999999999999973
No 434
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.96 E-value=19 Score=42.76 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=26.5
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCC-cceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN-GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN-~tIfAYGqTGSGKTyTM~ 159 (878)
-+||.|+++ +.+ ...+...+-.|.- ..++-||++|+|||++..
T Consensus 11 ~~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 11 KTFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CCHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 367777764 333 2233333334433 347889999999999874
No 435
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=39.94 E-value=2.3e+02 Score=30.36 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHH
Q 002808 554 KEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQK 633 (878)
Q Consensus 554 ~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K 633 (878)
+++++..+..++.++...+++|..+-++=...+.. +..-+..|+.--..+-.|..++|+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~------~~~~L~~Le~~W~~~v~kn~eie~--------------- 196 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE------AGEELRYLEQRWKELVSKNLEIEV--------------- 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 35577778888888888888887766543222221 223333444444444444455544
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 002808 634 ICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 634 ~~e~~~lqeel~~Lk~ql~~ 653 (878)
.|..|+.+|..|+++...
T Consensus 197 --a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 197 --ACEELEQEIEQLKRKAAE 214 (221)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 677777777777776543
No 436
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=39.85 E-value=12 Score=36.49 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=13.5
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+-+|.+|||||+.-.
T Consensus 2 i~l~G~~GsGKST~a~ 17 (150)
T cd02021 2 IVVMGVSGSGKSTVGK 17 (150)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6778999999998853
No 437
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=39.75 E-value=9.1e+02 Score=30.79 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHhhhHHHHHhhhH-----------HHHHHHHH----HhcCCchHHHHHHHHHHHHHHh
Q 002808 523 LREQQKILAGEVALHSS-----------ALKRLSEE----AARNPQKEQLQVEIKKLRDEIK 569 (878)
Q Consensus 523 L~eQlk~~~~Ei~~~ss-----------~lkrL~eq----a~~~~~~e~iq~e~~~l~~Ei~ 569 (878)
|.+-|+||.+|+..-.+ -+++|+++ -..-|+|..|+..|..|+++.+
T Consensus 484 Lk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 484 LQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 44455566655554221 14555555 3344566667777777777776
No 438
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=39.62 E-value=13 Score=37.45 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=13.3
Q ss_pred eeeecccCCCCcccc
Q 002808 144 IFAYGVTSSGKTHTM 158 (878)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (878)
|+.+|.+|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 439
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.59 E-value=6.6e+02 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 630 LNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 630 L~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
+..+..+...|+.++...+.++..+++
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677777766666666554
No 440
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=39.51 E-value=27 Score=43.44 Aligned_cols=37 Identities=38% Similarity=0.560 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||.. +......++ .|.|-||+.-|.+|||||.|..
T Consensus 73 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 110 (677)
T cd01383 73 PHVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETAK 110 (677)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHHH
Confidence 356763 333344444 5999999999999999999873
No 441
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=39.33 E-value=26 Score=43.58 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||..+ ......++ .|.|-||+.-|.+|||||.|..
T Consensus 67 PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 104 (674)
T cd01378 67 PHIYALA-DNAYRSMKSENENQCVIISGESGAGKTEAAK 104 (674)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCcchHHH
Confidence 3577633 33333333 6999999999999999999973
No 442
>CHL00181 cbbX CbbX; Provisional
Probab=39.20 E-value=17 Score=40.21 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.9
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999999864
No 443
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=39.09 E-value=16 Score=38.20 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHHHHhhcC---CCcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDG---INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~G---yN~tIfAYGqTGSGKTyTM~ 159 (878)
-+-+|.++.| ....+.-||++|||||..+.
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3556777775 35667889999999998874
No 444
>PRK04328 hypothetical protein; Provisional
Probab=39.07 E-value=18 Score=38.97 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=21.9
Q ss_pred HHHHHHhhcC---CCcceeeecccCCCCccc
Q 002808 130 QHVVSGAMDG---INGTIFAYGVTSSGKTHT 157 (878)
Q Consensus 130 ~plV~~vl~G---yN~tIfAYGqTGSGKTyT 157 (878)
-+-+|.++.| ...+++-+|++|+|||.-
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3457788876 477888899999999764
No 445
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=39.06 E-value=19 Score=41.03 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHhhcCCCcceeeecccCCCCccccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+.+.+|-+..+|..++||||||....
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~~ 32 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAWL 32 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHHH
Confidence 35577888888999999999999854
No 446
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=39.05 E-value=20 Score=40.24 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.2
Q ss_pred hhcCCCcceeeecccCCCCccccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-..+-+.-++-||+.|||||.+|.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345667789999999999999996
No 447
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=38.90 E-value=11 Score=37.61 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=15.0
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
+..+-||++|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 556679999999999884
No 448
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=38.81 E-value=7.8 Score=42.86 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.9
Q ss_pred cCCCcceeeecccCCCCcccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM 158 (878)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999866
No 449
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=38.76 E-value=25 Score=43.97 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCccccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.||..+ ......+ -.|.|-||+.-|.+|||||.|..
T Consensus 73 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 109 (717)
T cd01382 73 HVFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENTK 109 (717)
T ss_pred cHHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHHH
Confidence 466633 3333333 36999999999999999999973
No 450
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=38.67 E-value=12 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=16.3
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...++-||.+|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999999874
No 451
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.58 E-value=17 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=18.8
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+ |++.+|||||||.+.
T Consensus 37 i~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 37 IPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 444567865 788889999999875
No 452
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=38.55 E-value=28 Score=43.27 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||..+ ......++ .|.|-||+.-|.+|||||.|..
T Consensus 67 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 67 PHIFAIS-DNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 3566633 33333333 6999999999999999999973
No 453
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=38.49 E-value=27 Score=43.44 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||.. +......++ .|.|-||+.-|.+|||||.|..
T Consensus 68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHHH
Confidence 357764 333344444 6999999999999999999973
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=38.46 E-value=20 Score=37.82 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHHhhcCC---CcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (878)
-+-+|.++.|- ..+++.+|.+|||||+-..
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~ 43 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQ 43 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHH
Confidence 45567777543 6678888999999987653
No 455
>CHL00176 ftsH cell division protein; Validated
Probab=38.41 E-value=12 Score=45.98 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999975
No 456
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=38.26 E-value=21 Score=39.82 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+.+++..++.+. ..|+-.|+||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345566666544 456667999999999874
No 457
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.24 E-value=6.4e+02 Score=28.59 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHHHH
Q 002808 745 VELKALSEEVAKLMNHKERLTAELA 769 (878)
Q Consensus 745 velk~l~~evtkl~~~n~~l~~el~ 769 (878)
-++..+..++..+..+-..+...|.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666777776666666655554
No 458
>PRK10865 protein disaggregation chaperone; Provisional
Probab=38.08 E-value=17 Score=46.38 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.5
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
+.++-+|+||+|||++..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCK 616 (857)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 567888999999999873
No 459
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=38.06 E-value=3.4e+02 Score=25.34 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhH----HHHhhhHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELE----VKAADNRIIQEQLNQ 632 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE----~ksadN~~lqEqL~~ 632 (878)
+..+.+.+...+..+..++..||++|.- ++---.+.++|-|+++ ....|++.|.-+++.
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~r-----------------l~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLR-----------------LEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666777776631 2223445688888775 344788888888877
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 002808 633 KICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 633 K~~e~~~lqeel~~Lk~ql~ 652 (878)
-.+-..+|++.=..+..+|.
T Consensus 71 s~~~i~~L~~~E~~~~~~l~ 90 (96)
T PF08647_consen 71 SSELIEQLKETEKEFVRKLK 90 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 76666666664444444443
No 460
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.02 E-value=13 Score=43.65 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.2
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366777999999999985
No 461
>PHA02624 large T antigen; Provisional
Probab=37.86 E-value=24 Score=43.27 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=22.9
Q ss_pred HHHHHhhcCCCc--ceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGING--TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~--tIfAYGqTGSGKTyTM~ 159 (878)
.++..++.|.-. ||+-||+.|||||+-..
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 346667777766 99999999999987653
No 462
>PRK00131 aroK shikimate kinase; Reviewed
Probab=37.82 E-value=14 Score=36.31 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=15.3
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
.+|+-+|.+|||||+.-.
T Consensus 5 ~~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGR 22 (175)
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 368999999999998853
No 463
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.67 E-value=2.7e+02 Score=24.97 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHH
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSE 546 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~e 546 (878)
+|..|.+--.-|+.-.-.+..++|+|..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~ 40 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRA 40 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444444444444444444444433
No 464
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.66 E-value=4.1e+02 Score=32.89 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICE 636 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e 636 (878)
++.|++.|+.+|++.+.-|-.|+.++...-.. +. .=-.|.-|++.+-..+..|.-+|.++...
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~------~~-----------~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRRE------VR-----------DKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777666321111 00 00122334555555666677777777777
Q ss_pred HHhHHHHHHHHHH
Q 002808 637 CEGLQETIGFLKQ 649 (878)
Q Consensus 637 ~~~lqeel~~Lk~ 649 (878)
..+|..++..|++
T Consensus 497 ve~L~~~l~~l~k 509 (652)
T COG2433 497 VEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777764
No 465
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=37.64 E-value=28 Score=43.39 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCcccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 158 (878)
-.||.. +......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 467763 333334443 699999999999999999996
No 466
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=37.59 E-value=5.5e+02 Score=28.85 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=61.0
Q ss_pred CchHHHHHHHHHHhhhHHHHHhh--hHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccC
Q 002808 515 KTIDQIDLLREQQKILAGEVALH--SSALKRLSEE-AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (878)
Q Consensus 515 ~~~d~~dlL~eQlk~~~~Ei~~~--ss~lkrL~eq-a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~ 591 (878)
...++|+-|++|.-.+-+-+=.. +++=.+|.+- +...|+|- ..+..|+...++-
T Consensus 20 ~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl---~~~~~L~~~~ker-------------------- 76 (291)
T KOG4466|consen 20 NEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYL---KRVKKLDESRKER-------------------- 76 (291)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHH---HHHHHHHHHHHHH--------------------
Confidence 34677888888876655444332 3332333222 55666663 3466666665553
Q ss_pred cccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002808 592 TMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQ 649 (878)
Q Consensus 592 k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ 649 (878)
..|..-+.++.+..-+--+++|+++|--+-=.+.+--|-.-..+|++.+..|++
T Consensus 77 ----l~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLke~l~seleeKkrkiee 130 (291)
T KOG4466|consen 77 ----LRVAELYREYCVERVEREYECEIKAAKKEYESKKKLLKENLISELEEKKRKIEE 130 (291)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888889999999974333233333333334444554444443
No 467
>PHA03011 hypothetical protein; Provisional
Probab=37.57 E-value=1.2e+02 Score=28.89 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=45.8
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
|.-++-..+.||..|||+-..|--...-+...+.-=+|....+..-|..++..||+|+..
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 455677778999999999988876655444444444566677899999999999999865
No 468
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=37.41 E-value=18 Score=44.56 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.8
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.++-.|++|+|||||+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46689999999999985
No 469
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.25 E-value=1.6e+02 Score=29.94 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhh
Q 002808 518 DQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKN 572 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~ 572 (878)
...+.+.++++.+.++|+-....|+.|+. ...+++.||.+|..|+.+++.++
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~---~~~d~eeLk~~i~~lq~~~~~~~ 71 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKK---SAKDNEELKKQIEELQAKNKTAK 71 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777888877 47788889999999999998543
No 470
>PF13173 AAA_14: AAA domain
Probab=37.16 E-value=14 Score=35.26 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.6
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
-.++-+|+.|+|||+.|.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357789999999999996
No 471
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=36.99 E-value=29 Score=36.71 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhhc-CCCcceeeecccCCCCccccc
Q 002808 123 HVYDIAAQHVVSGAMD-GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 123 eVY~~~~~plV~~vl~-GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+|..++..+...+-. |....|.-.|++|||||+.+.
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~ 51 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAE 51 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence 4455455444443333 444456667999999999774
No 472
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=36.92 E-value=15 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.4
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
+|+.+|.+|||||+.-.
T Consensus 1 ~i~l~G~~GsGKstla~ 17 (154)
T cd00464 1 NIVLIGMMGAGKTTVGR 17 (154)
T ss_pred CEEEEcCCCCCHHHHHH
Confidence 47889999999998753
No 473
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.86 E-value=8.4e+02 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=12.0
Q ss_pred hhHHHHHHHhhhhhhHHHH
Q 002808 749 ALSEEVAKLMNHKERLTAE 767 (878)
Q Consensus 749 ~l~~evtkl~~~n~~l~~e 767 (878)
.|.+||..|+.+|.+++.|
T Consensus 169 ~L~~qi~~L~~~n~~i~~e 187 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQE 187 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666
No 474
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=36.86 E-value=19 Score=37.67 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=22.2
Q ss_pred HHHHHHhhcCC---CcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (878)
-|-+|.++.|- ...+.-||.+|+|||....
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 45577777543 4467889999999998764
No 475
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.75 E-value=2.6e+02 Score=25.19 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 558 QVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 558 q~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
+.+|.+|+.||=.-|=.|.-||+++.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45799999999999999999999994
No 476
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.45 E-value=17 Score=40.44 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=23.2
Q ss_pred HHH-HhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVS-GAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~-~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+|. ++-+||...|+|.|.||-|||..|.
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLmd 60 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLMD 60 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHHH
Confidence 443 4568999999999999999998773
No 477
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=36.40 E-value=5e+02 Score=32.69 Aligned_cols=137 Identities=22% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHH
Q 002808 559 VEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECE 638 (878)
Q Consensus 559 ~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~ 638 (878)
.|+-+++-| +++++.+..+++.= +..+.-+.++.-+-+..|..|..+||..= ..|.........++.
T Consensus 127 ae~~R~~lE-E~~q~ELee~q~~H---------qeql~~Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r~~e~~~La 193 (739)
T PF07111_consen 127 AEVVRKNLE-EGSQRELEEAQRLH---------QEQLSSLTQAHQEALASLTSKAEELEKSL---ESLETRRAGEAKELA 193 (739)
T ss_pred HHHHHHhhH-HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHh
Q 002808 639 GLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEA 718 (878)
Q Consensus 639 ~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~ 718 (878)
..|.+...|++||+..-+. .....--..+...|.++.-+..... +....|-++|...+-+|.|+
T Consensus 194 ~~q~e~d~L~~qLsk~~~~-----le~q~tlv~~LR~YvGeq~p~~~~~-----------~~we~Er~~L~~tVq~L~ed 257 (739)
T PF07111_consen 194 EAQREADLLREQLSKTQEE-----LEAQVTLVEQLRKYVGEQVPPEVHS-----------QAWEPEREELLETVQHLQED 257 (739)
T ss_pred HHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHhhhCCccccc-----------HHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhh
Q 002808 719 KEQLEL 724 (878)
Q Consensus 719 ~~~l~~ 724 (878)
++.|..
T Consensus 258 R~~L~~ 263 (739)
T PF07111_consen 258 RDALQA 263 (739)
T ss_pred HHHHHH
No 478
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.36 E-value=14 Score=44.09 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.5
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-.|+||+|||.|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467778999999999985
No 479
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.33 E-value=21 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.9
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
|..++.|.| |++.++||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 345678988 666889999999774
No 480
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.29 E-value=9.1e+02 Score=29.77 Aligned_cols=186 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhc
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEA 673 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~ 673 (878)
++-.+-+-++.|+.-|.|-.-+.=--+---..|-|+-....-.|.+|+.+...++..|-..-++
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkea---------------- 72 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEA---------------- 72 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q ss_pred cccccccchhhhhhhhhhchhhHHHHHHHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHH
Q 002808 674 KSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEE 753 (878)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~e 753 (878)
...-+..++-....++..++.+++..++.-+.+-+++.+|. -|||.|--|
T Consensus 73 --l~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~ele----------------------------neLKq~r~e 122 (772)
T KOG0999|consen 73 --LGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELE----------------------------NELKQLRQE 122 (772)
T ss_pred --HHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHH----------------------------HHHHHHHHH
Q ss_pred HHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChH----HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002808 754 VAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSL----DLKRELALSREREVSYEAALLEKDQQE 829 (878)
Q Consensus 754 vtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~re~~~e~~l~ek~~~e 829 (878)
+|.--.+|++|.+.-.-.+.... +++ -||-||..-|.||+-|=.--+|-+.--
T Consensus 123 l~~~q~E~erl~~~~sd~~e~~~-----------------------~~E~qR~rlr~elKe~KfRE~RllseYSELEEEN 179 (772)
T KOG0999|consen 123 LTNVQEENERLEKVHSDLKESNA-----------------------AVEDQRRRLRDELKEYKFREARLLSEYSELEEEN 179 (772)
T ss_pred HHHHHHHHHHHHHHHHHhhhcch-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHhhhhHHHHHh
Q 002808 830 AELQRKVEESKKREAYLEN 848 (878)
Q Consensus 830 ~el~~~~~e~k~~e~~len 848 (878)
--|||.|---++---..|.
T Consensus 180 IsLQKqVs~LR~sQVEyEg 198 (772)
T KOG0999|consen 180 ISLQKQVSNLRQSQVEYEG 198 (772)
T ss_pred chHHHHHHHHhhhhhhhhH
No 481
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.19 E-value=38 Score=35.04 Aligned_cols=46 Identities=33% Similarity=0.380 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 002808 801 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENEL 850 (878)
Q Consensus 801 ~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~l 850 (878)
++||-.=|+...||-+.||.-|-||+.+..|.||=-||+. +|--||
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~R----DLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELR----DLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 5788889999999999999999999999999999999875 444444
No 482
>COG4550 Predicted membrane protein [Function unknown]
Probab=36.08 E-value=2.6e+02 Score=27.40 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhccc---CcccchhhhHHH-HHHHHHhh
Q 002808 538 SSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH---NTMDNSEVSQSF-AELAAQLN 610 (878)
Q Consensus 538 ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~---~k~~~~ev~qal-~eL~~q~~ 610 (878)
...+|.|-.+|.+..-+++. .-++....+|..||.+|...-.... ..+|+.+++|-+ .++..++|
T Consensus 44 ~~~iK~lQKeAVn~q~y~K~--------eAlkqses~i~~le~ei~~~PlVeefr~sq~daNdLlQ~it~tie~~vn 112 (120)
T COG4550 44 VDEIKKLQKEAVNLQHYDKE--------EALKQSESKIDELEAEIDHLPLVEEFRTSQEDANDLLQYITKTIETQVN 112 (120)
T ss_pred HHHHHHHHHhhHHHHHhhHH--------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445555555544444322 1245556778888888843221110 134788888876 45555655
No 483
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=36.00 E-value=30 Score=43.11 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.||.. +......++ .|.|-||+.-|.+|||||.+..
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 67 PHIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 356653 333333333 7999999999999999999973
No 484
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=35.82 E-value=24 Score=43.71 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=19.5
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..+.-.++..-++..|+||||||.+..
T Consensus 274 ~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 274 LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 334344555578999999999998754
No 485
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=35.59 E-value=17 Score=43.90 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.||..|+|+|||||--.
T Consensus 193 Ii~H~GPTNSGKTy~AL 209 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL 209 (700)
T ss_pred EEEEeCCCCCchhHHHH
Confidence 38999999999999864
No 486
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=35.50 E-value=24 Score=40.24 Aligned_cols=43 Identities=14% Similarity=0.393 Sum_probs=30.2
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|.|..|.+ |+++ ..-++-.+++..-+-|+-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 45666655 3333 3455566677666778899999999999874
No 487
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=35.50 E-value=3.5e+02 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=27.3
Q ss_pred HHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Q 002808 532 GEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKG 570 (878)
Q Consensus 532 ~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~ 570 (878)
-+|+...+.|+++..+-++..|...+...|..+..++..
T Consensus 6 ~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~ 44 (102)
T PF14523_consen 6 FKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQ 44 (102)
T ss_dssp HHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHH
Confidence 358888999999999999999988776666655555444
No 488
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=35.44 E-value=26 Score=41.85 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=18.3
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.| +++..+||||||.+.
T Consensus 152 ip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHHH
Confidence 445678876 677889999999764
No 489
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.35 E-value=29 Score=43.63 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=15.6
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467789999999999985
No 490
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.27 E-value=8.5e+02 Score=29.10 Aligned_cols=54 Identities=30% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHH----HHHhhHHHHHHHhhhhhhHHHH
Q 002808 704 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAV----ELKALSEEVAKLMNHKERLTAE 767 (878)
Q Consensus 704 e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaav----elk~l~~evtkl~~~n~~l~~e 767 (878)
-||+|..++.+|...|--++..- -+--||=-+ |+|+|--+=-+|.-||+.|..-
T Consensus 375 Lieelrkelehlr~~kl~~a~p~----------rgrsSaRe~eleqevkrLrq~nr~l~eqneelngt 432 (502)
T KOG0982|consen 375 LIEELRKELEHLRRRKLVLANPV----------RGRSSAREIELEQEVKRLRQPNRILSEQNEELNGT 432 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc----------cCchhHHHHHHHHHHHHhccccchhhhhhhhhhhh
Confidence 46777777777766665444211 111223333 4556666666677777776544
No 491
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=35.11 E-value=16 Score=36.78 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.6
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
|+.+|++|||||+...
T Consensus 2 I~i~G~pGsGKst~a~ 17 (194)
T cd01428 2 ILLLGPPGSGKGTQAE 17 (194)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999997653
No 492
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.07 E-value=33 Score=38.23 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHh
Q 002808 826 DQQEAELQRKVEESKKREAYLEN 848 (878)
Q Consensus 826 ~~~e~el~~~~~e~k~~e~~len 848 (878)
..+|+||+||-+|-|.||..|-|
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Confidence 45688888888888888876665
No 493
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=35.06 E-value=3.1e+02 Score=32.08 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=5.0
Q ss_pred HHHHHHHHHhc
Q 002808 353 HNTLKFAHRAK 363 (878)
Q Consensus 353 LsTLrFAsRak 363 (878)
-+-|+.+..|-
T Consensus 68 ~sylkl~~~AD 78 (455)
T KOG3850|consen 68 ASYLKLVNNAD 78 (455)
T ss_pred HHHHHHhhccc
Confidence 34455554443
No 494
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=34.98 E-value=3.1e+02 Score=29.54 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=42.8
Q ss_pred HHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHH
Q 002808 522 LLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQS 601 (878)
Q Consensus 522 lL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qa 601 (878)
.+.+-|+-++||+. .+||+--+| -+++..|..|..+.+-.-+-|..|++.+ ++.-++
T Consensus 47 ~il~Ll~~kd~ef~---~llkla~eq-------~k~e~~m~~Lea~VEkrD~~IQqLqk~L-------------K~aE~i 103 (272)
T KOG4552|consen 47 NILKLLDSKDDEFK---TLLKLAPEQ-------QKREQLMRTLEAHVEKRDEVIQQLQKNL-------------KSAEVI 103 (272)
T ss_pred HHHHHHHhccHHHH---HHHHHhHhH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------HHHHHH
Confidence 34445556666654 233333333 3455567777777777767777777765 555566
Q ss_pred HHHHHHHhhhhhhhh
Q 002808 602 FAELAAQLNEKSFEL 616 (878)
Q Consensus 602 l~eL~~q~~eKs~el 616 (878)
|.--.-|-|||+-.+
T Consensus 104 Ltta~fqA~qKLksi 118 (272)
T KOG4552|consen 104 LTTACFQANQKLKSI 118 (272)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666667666543
No 495
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.88 E-value=5.8e+02 Score=27.06 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHhhccCCC
Q 002808 638 EGLQETIGFLKQQLNDALELRNFSP 662 (878)
Q Consensus 638 ~~lqeel~~Lk~ql~~~~~~~~~~~ 662 (878)
..|++.+..-.-||..++.+.++.|
T Consensus 153 ~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 153 QALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444445555556666666555533
No 496
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=34.84 E-value=1.6e+02 Score=31.36 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHH-------------hhhHHHHHHHHHHHHH
Q 002808 570 GKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKA-------------ADNRIIQEQLNQKICE 636 (878)
Q Consensus 570 ~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ks-------------adN~~lqEqL~~K~~e 636 (878)
-..+|.+.||+.-. .+.+--..-...||.+|.=-.-.+++.- .|...|+.++..+..+
T Consensus 57 lt~eQ~~~LE~~F~---------~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~ 127 (198)
T KOG0483|consen 57 LTSEQVKFLEKSFE---------SEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSE 127 (198)
T ss_pred ccHHHHHHhHHhhc---------cccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhh
Confidence 34578888888662 2222222335778888887777777654 7889999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 002808 637 CEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 637 ~~~lqeel~~Lk~ql~~~~~ 656 (878)
+..||.++..|..++..+..
T Consensus 128 ~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 128 NDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred hhHHHHHHHHHHHHHhhhhh
Confidence 99999999999999976554
No 497
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.60 E-value=7.7e+02 Score=31.28 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=31.2
Q ss_pred HhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 002808 527 QKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (878)
Q Consensus 527 lk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~ 584 (878)
++.+..++.+|-.-|..|.+. -+.++....+|.+-++..++.-+.|.+|+..
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~------~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEE------RKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666665555555443 2335555666777777777777777777743
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=34.59 E-value=15 Score=36.36 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.0
Q ss_pred eeeecccCCCCcccc
Q 002808 144 IFAYGVTSSGKTHTM 158 (878)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (878)
|+-.|++|||||+.-
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 456799999998764
No 499
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.56 E-value=1.6e+02 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
++|.....+|+.=-..+.+|+.+|..|+.++..
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777778888888888888888754
No 500
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=34.42 E-value=16 Score=40.13 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.6
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+..+|+..|++|+|||..+.
T Consensus 1 ~g~~f~I~vvG~sg~GKSTliN 22 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFIN 22 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHHH
Confidence 4899999999999999998763
Done!