Query 002808
Match_columns 878
No_of_seqs 418 out of 1993
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 02:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 6.2E-84 2.1E-88 715.8 23.0 322 65-395 9-362 (365)
2 1goj_A Kinesin, kinesin heavy 100.0 2.6E-83 8.8E-88 708.7 27.2 307 65-375 4-340 (355)
3 3b6u_A Kinesin-like protein KI 100.0 1E-82 3.5E-87 706.9 26.1 309 64-373 18-361 (372)
4 2owm_A Nckin3-434, related to 100.0 1.7E-82 5.9E-87 719.4 27.7 310 63-374 34-422 (443)
5 2zfi_A Kinesin-like protein KI 100.0 2.2E-82 7.4E-87 704.1 23.1 308 66-373 3-362 (366)
6 2vvg_A Kinesin-2; motor protei 100.0 6.1E-82 2.1E-86 696.4 25.9 305 66-374 3-344 (350)
7 1t5c_A CENP-E protein, centrom 100.0 1.5E-81 5.3E-86 693.1 27.2 307 66-376 3-339 (349)
8 3bfn_A Kinesin-like protein KI 100.0 6.2E-82 2.1E-86 703.3 23.5 311 63-377 17-359 (388)
9 1x88_A Kinesin-like protein KI 100.0 4.2E-82 1.4E-86 700.2 21.6 309 63-373 4-358 (359)
10 3cob_A Kinesin heavy chain-lik 100.0 1.4E-81 4.8E-86 697.5 24.7 306 64-375 2-337 (369)
11 1bg2_A Kinesin; motor protein, 100.0 1.3E-81 4.5E-86 687.9 23.5 292 65-365 5-325 (325)
12 3lre_A Kinesin-like protein KI 100.0 5.3E-81 1.8E-85 690.5 26.0 301 63-365 6-355 (355)
13 2wbe_C Bipolar kinesin KRP-130 100.0 3.6E-81 1.2E-85 695.6 23.5 308 64-373 20-369 (373)
14 4a14_A Kinesin, kinesin-like p 100.0 9E-80 3.1E-84 678.4 27.0 296 65-363 9-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 6E-80 2.1E-84 681.8 23.6 299 67-365 1-350 (354)
16 3nwn_A Kinesin-like protein KI 100.0 4.9E-80 1.7E-84 683.2 22.5 296 64-365 21-359 (359)
17 3t0q_A AGR253WP; kinesin, alph 100.0 1.7E-79 5.7E-84 677.3 24.3 300 65-369 3-348 (349)
18 2h58_A Kinesin-like protein KI 100.0 3.8E-79 1.3E-83 669.7 24.3 297 65-367 2-330 (330)
19 1f9v_A Kinesin-like protein KA 100.0 4.1E-79 1.4E-83 673.6 23.3 300 66-370 2-346 (347)
20 2heh_A KIF2C protein; kinesin, 100.0 4.7E-79 1.6E-83 679.9 22.8 292 66-368 50-385 (387)
21 2rep_A Kinesin-like protein KI 100.0 8.7E-79 3E-83 676.6 24.6 302 58-365 13-376 (376)
22 2nr8_A Kinesin-like protein KI 100.0 6.2E-79 2.1E-83 674.2 22.4 297 63-365 19-358 (358)
23 1v8k_A Kinesin-like protein KI 100.0 8.4E-79 2.9E-83 681.8 23.1 294 66-370 70-407 (410)
24 1ry6_A Internal kinesin; kines 100.0 1.4E-78 4.7E-83 671.9 22.4 297 68-373 1-339 (360)
25 3u06_A Protein claret segregat 100.0 2E-77 7E-82 672.5 24.3 302 64-374 56-392 (412)
26 4etp_A Kinesin-like protein KA 100.0 2.1E-77 7.2E-82 671.5 23.5 301 65-370 57-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 3.7E-76 1.3E-80 649.0 24.9 288 63-370 18-340 (344)
28 4h1g_A Maltose binding protein 100.0 1.2E-72 4.1E-77 673.7 22.0 297 65-366 372-712 (715)
29 3kin_B Kinesin heavy chain; mo 100.0 2.1E-29 7.3E-34 238.0 8.9 112 294-406 1-112 (117)
30 2kin_B Kinesin; motor protein, 100.0 1E-29 3.5E-34 233.6 4.9 98 290-388 1-98 (100)
31 2o0a_A S.cerevisiae chromosome 99.9 1.4E-23 4.8E-28 222.6 11.3 257 65-372 22-296 (298)
32 1i84_S Smooth muscle myosin he 97.3 0.0005 1.7E-08 86.9 10.6 35 123-158 151-186 (1184)
33 1c1g_A Tropomyosin; contractIl 97.1 0.32 1.1E-05 48.9 33.4 22 518-539 13-34 (284)
34 1i84_S Smooth muscle myosin he 97.0 0.00088 3E-08 84.7 8.8 15 265-279 458-472 (1184)
35 2dfs_A Myosin-5A; myosin-V, in 94.7 0.29 9.9E-06 61.5 15.2 35 123-158 138-173 (1080)
36 3ec2_A DNA replication protein 93.7 0.016 5.6E-07 56.3 0.9 51 108-159 6-56 (180)
37 3a7o_A Autophagy protein 16; c 92.9 0.46 1.6E-05 40.6 8.4 63 553-649 12-74 (75)
38 2w58_A DNAI, primosome compone 92.8 0.035 1.2E-06 54.8 1.8 51 108-159 21-72 (202)
39 3na7_A HP0958; flagellar bioge 92.7 3.3 0.00011 43.4 16.8 59 517-582 52-113 (256)
40 3oja_B Anopheles plasmodium-re 92.6 2 6.9E-05 49.5 16.6 91 558-651 462-553 (597)
41 3vkg_A Dynein heavy chain, cyt 92.1 3.4 0.00012 57.2 19.9 213 511-758 1892-2128(3245)
42 2qgz_A Helicase loader, putati 91.8 0.056 1.9E-06 58.1 2.0 51 108-159 120-170 (308)
43 2dfs_A Myosin-5A; myosin-V, in 91.1 2.2 7.4E-05 53.7 15.4 15 265-279 431-445 (1080)
44 3t15_A Ribulose bisphosphate c 88.1 0.19 6.4E-06 53.4 2.3 49 111-159 2-54 (293)
45 3o0z_A RHO-associated protein 87.4 16 0.00054 36.4 15.3 35 619-653 46-80 (168)
46 3na7_A HP0958; flagellar bioge 86.9 16 0.00053 38.2 16.2 120 703-846 18-137 (256)
47 2r62_A Cell division protease 86.5 0.36 1.2E-05 49.6 3.3 51 108-159 7-62 (268)
48 3vfd_A Spastin; ATPase, microt 85.6 0.16 5.6E-06 55.8 0.1 52 108-159 111-166 (389)
49 1jbk_A CLPB protein; beta barr 85.4 0.38 1.3E-05 45.4 2.6 31 129-159 31-61 (195)
50 1l8q_A Chromosomal replication 85.1 0.42 1.4E-05 50.8 3.0 49 108-159 7-55 (324)
51 2bjv_A PSP operon transcriptio 85.1 0.3 1E-05 50.3 1.9 46 108-159 2-47 (265)
52 3hnw_A Uncharacterized protein 84.2 6.6 0.00023 37.8 10.6 29 702-730 102-130 (138)
53 1g8p_A Magnesium-chelatase 38 83.6 0.37 1.3E-05 51.2 1.8 44 108-159 20-63 (350)
54 3oja_B Anopheles plasmodium-re 83.5 7.7 0.00026 44.6 13.0 43 616-658 539-581 (597)
55 3h4m_A Proteasome-activating n 83.5 0.32 1.1E-05 50.4 1.2 52 108-159 13-69 (285)
56 2p65_A Hypothetical protein PF 83.4 0.45 1.5E-05 45.0 2.1 30 130-159 32-61 (187)
57 1m1j_B Fibrinogen beta chain; 83.0 15 0.00052 42.0 14.6 32 515-546 93-124 (464)
58 1ixz_A ATP-dependent metallopr 82.9 0.24 8.1E-06 50.7 -0.1 51 108-159 12-67 (254)
59 3cf0_A Transitional endoplasmi 82.6 0.42 1.4E-05 50.7 1.8 52 108-159 11-67 (301)
60 3vkg_A Dynein heavy chain, cyt 82.0 60 0.0021 45.4 22.1 66 702-767 2041-2106(3245)
61 3te6_A Regulatory protein SIR3 81.7 0.43 1.5E-05 51.9 1.4 27 133-159 37-63 (318)
62 4etp_B Spindle POLE BODY-assoc 81.4 4.2 0.00014 44.3 8.8 236 65-347 57-310 (333)
63 3b9p_A CG5977-PA, isoform A; A 80.4 0.49 1.7E-05 49.4 1.2 52 108-159 17-72 (297)
64 3bos_A Putative DNA replicatio 80.1 0.8 2.7E-05 45.3 2.6 45 109-159 25-70 (242)
65 2v1u_A Cell division control p 79.9 0.52 1.8E-05 50.3 1.3 39 120-159 23-62 (387)
66 1iy2_A ATP-dependent metallopr 78.7 0.4 1.4E-05 50.0 -0.1 51 108-159 36-91 (278)
67 3d8b_A Fidgetin-like protein 1 78.6 0.51 1.8E-05 51.4 0.7 52 108-159 80-135 (357)
68 2z4s_A Chromosomal replication 78.0 0.89 3.1E-05 51.2 2.5 48 108-159 101-148 (440)
69 1d2n_A N-ethylmaleimide-sensit 77.4 1.3 4.5E-05 45.7 3.4 22 138-159 61-82 (272)
70 2v71_A Nuclear distribution pr 77.1 66 0.0022 32.6 16.6 41 800-840 131-171 (189)
71 2qz4_A Paraplegin; AAA+, SPG7, 77.1 0.45 1.6E-05 48.3 -0.2 20 140-159 38-57 (262)
72 2kjq_A DNAA-related protein; s 76.9 0.87 3E-05 43.6 1.7 18 142-159 37-54 (149)
73 3s4r_A Vimentin; alpha-helix, 76.9 3.5 0.00012 37.2 5.5 86 717-862 6-91 (93)
74 4b4t_L 26S protease subunit RP 76.6 1.6 5.5E-05 49.5 4.1 51 109-159 178-233 (437)
75 1xwi_A SKD1 protein; VPS4B, AA 76.6 0.8 2.7E-05 49.3 1.5 51 109-159 9-63 (322)
76 2chg_A Replication factor C sm 75.8 1.3 4.3E-05 42.8 2.6 22 138-159 35-56 (226)
77 4b4t_M 26S protease regulatory 75.7 0.93 3.2E-05 51.4 1.8 51 109-159 178-233 (434)
78 1vec_A ATP-dependent RNA helic 75.4 1.3 4.4E-05 43.3 2.5 25 133-159 34-58 (206)
79 1qde_A EIF4A, translation init 75.3 1.1 3.7E-05 44.5 2.0 24 133-158 45-68 (224)
80 3cve_A Homer protein homolog 1 75.2 19 0.00066 31.0 9.4 31 557-587 5-35 (72)
81 4b4t_K 26S protease regulatory 75.0 1.7 5.7E-05 49.3 3.6 51 109-159 169-224 (428)
82 1lv7_A FTSH; alpha/beta domain 74.2 0.66 2.2E-05 47.5 0.1 51 108-159 8-63 (257)
83 3syl_A Protein CBBX; photosynt 74.0 1 3.5E-05 47.0 1.5 21 139-159 65-85 (309)
84 2gxq_A Heat resistant RNA depe 73.8 1.3 4.4E-05 43.2 2.1 23 134-158 33-55 (207)
85 1fnn_A CDC6P, cell division co 73.6 1.8 6.1E-05 46.3 3.3 46 109-159 14-62 (389)
86 3o0z_A RHO-associated protein 72.6 50 0.0017 32.8 13.0 33 621-653 118-154 (168)
87 3eie_A Vacuolar protein sortin 72.3 1.1 3.7E-05 47.9 1.2 51 109-159 15-69 (322)
88 3cvf_A Homer-3, homer protein 72.2 15 0.00052 32.2 8.2 32 556-587 10-41 (79)
89 1sxj_C Activator 1 40 kDa subu 72.1 1.8 6.1E-05 46.3 2.9 42 110-159 23-64 (340)
90 2qp9_X Vacuolar protein sortin 71.5 1.3 4.5E-05 48.2 1.6 52 108-159 47-102 (355)
91 3dkp_A Probable ATP-dependent 71.0 1.6 5.5E-05 44.1 2.1 24 133-158 60-83 (245)
92 2x8a_A Nuclear valosin-contain 71.0 0.58 2E-05 49.3 -1.3 51 109-159 7-62 (274)
93 4b4t_J 26S protease regulatory 70.9 3.5 0.00012 46.4 5.0 51 109-159 145-200 (405)
94 2ocy_A RAB guanine nucleotide 70.7 49 0.0017 32.5 12.3 57 595-651 81-145 (154)
95 3bor_A Human initiation factor 70.4 1.1 3.7E-05 45.5 0.6 24 133-158 61-84 (237)
96 3uk6_A RUVB-like 2; hexameric 70.0 1.8 6E-05 46.4 2.2 47 108-159 40-88 (368)
97 1sxj_D Activator 1 41 kDa subu 69.9 1.8 6.2E-05 45.8 2.3 42 110-159 35-76 (353)
98 2pl3_A Probable ATP-dependent 68.7 1.9 6.6E-05 43.2 2.1 24 133-158 56-79 (236)
99 1p9r_A General secretion pathw 68.3 1.8 6.2E-05 48.7 1.9 29 131-159 157-185 (418)
100 2qby_A CDC6 homolog 1, cell di 67.8 1.7 5.8E-05 46.2 1.5 21 139-159 43-63 (386)
101 3ly5_A ATP-dependent RNA helic 67.7 1.7 5.9E-05 44.9 1.5 24 133-158 85-108 (262)
102 2jee_A YIIU; FTSZ, septum, coi 67.7 4.8 0.00017 35.5 4.1 32 701-732 25-63 (81)
103 1t6n_A Probable ATP-dependent 67.7 2 6.8E-05 42.5 1.9 25 133-159 45-69 (220)
104 2qby_B CDC6 homolog 3, cell di 67.6 2.2 7.6E-05 45.6 2.4 46 109-159 17-63 (384)
105 3b6e_A Interferon-induced heli 67.1 1.1 3.8E-05 43.7 -0.1 23 135-159 44-66 (216)
106 2zan_A Vacuolar protein sortin 66.3 1.4 4.7E-05 49.7 0.4 52 108-159 130-185 (444)
107 3fmo_B ATP-dependent RNA helic 66.1 2.3 7.8E-05 45.1 2.1 26 133-158 123-148 (300)
108 3jvv_A Twitching mobility prot 66.0 2 6.7E-05 47.3 1.6 28 132-159 114-141 (356)
109 1iqp_A RFCS; clamp loader, ext 65.6 2.7 9.1E-05 43.8 2.5 42 110-159 23-64 (327)
110 3hnw_A Uncharacterized protein 65.4 16 0.00056 35.1 7.7 64 514-583 64-127 (138)
111 2c9o_A RUVB-like 1; hexameric 65.3 2.9 9.8E-05 47.1 2.8 47 108-159 33-81 (456)
112 1wrb_A DJVLGB; RNA helicase, D 65.1 2.5 8.4E-05 43.0 2.0 23 134-158 55-77 (253)
113 3iuy_A Probable ATP-dependent 64.8 2.4 8.3E-05 42.2 1.9 24 134-159 52-75 (228)
114 3llm_A ATP-dependent RNA helic 64.3 2.2 7.5E-05 43.2 1.5 25 132-158 69-93 (235)
115 3eiq_A Eukaryotic initiation f 64.2 2.9 0.0001 44.9 2.5 24 133-158 71-94 (414)
116 3jsv_C NF-kappa-B essential mo 64.2 51 0.0018 29.8 10.0 33 702-734 60-92 (94)
117 1in4_A RUVB, holliday junction 63.6 3.6 0.00012 44.2 3.0 18 142-159 52-69 (334)
118 3hu3_A Transitional endoplasmi 63.4 2.3 8E-05 48.7 1.7 51 109-159 201-256 (489)
119 3fe2_A Probable ATP-dependent 63.4 2.5 8.6E-05 42.7 1.7 23 134-158 61-83 (242)
120 4b4t_H 26S protease regulatory 62.8 1.5 5E-05 50.3 -0.2 51 109-159 206-261 (467)
121 1u0j_A DNA replication protein 62.7 3.2 0.00011 44.1 2.4 30 130-159 90-122 (267)
122 2oxc_A Probable ATP-dependent 62.6 2.9 0.0001 41.9 2.0 22 135-158 57-78 (230)
123 4b4t_I 26S protease regulatory 62.2 8.7 0.0003 43.6 5.9 51 109-159 179-234 (437)
124 3ber_A Probable ATP-dependent 61.6 3.1 0.00011 42.6 2.1 23 134-158 75-97 (249)
125 3co5_A Putative two-component 61.4 4.3 0.00015 38.0 2.8 20 140-159 26-45 (143)
126 1ofh_A ATP-dependent HSL prote 60.9 3.6 0.00012 42.5 2.4 19 141-159 50-68 (310)
127 3n70_A Transport activator; si 60.9 3.1 0.00011 38.9 1.8 21 139-159 22-42 (145)
128 2zqm_A Prefoldin beta subunit 60.8 26 0.00089 31.7 7.9 31 626-656 82-112 (117)
129 2eyu_A Twitching motility prot 60.7 2.9 9.8E-05 43.8 1.6 20 140-159 24-43 (261)
130 1fxk_A Prefoldin; archaeal pro 60.5 21 0.00071 31.9 7.1 27 627-653 78-104 (107)
131 1go4_E MAD1 (mitotic arrest de 60.3 18 0.00063 33.0 6.6 32 622-653 13-44 (100)
132 2ocy_A RAB guanine nucleotide 60.2 1.3E+02 0.0045 29.4 16.1 38 805-842 107-144 (154)
133 3fht_A ATP-dependent RNA helic 60.0 3.5 0.00012 44.2 2.2 26 133-158 56-81 (412)
134 1q0u_A Bstdead; DEAD protein, 59.9 2.2 7.4E-05 42.4 0.5 23 134-158 36-58 (219)
135 1go4_E MAD1 (mitotic arrest de 59.6 14 0.00049 33.8 5.7 69 701-772 17-95 (100)
136 3fmp_B ATP-dependent RNA helic 59.5 3.3 0.00011 46.2 1.9 26 133-158 123-148 (479)
137 3pxg_A Negative regulator of g 59.5 5.3 0.00018 45.2 3.6 42 110-159 178-219 (468)
138 3pey_A ATP-dependent RNA helic 59.5 3.4 0.00012 43.8 2.0 26 133-158 36-61 (395)
139 1njg_A DNA polymerase III subu 59.4 4.1 0.00014 39.4 2.4 18 142-159 46-63 (250)
140 2r44_A Uncharacterized protein 59.4 3 0.0001 44.2 1.5 34 120-159 31-64 (331)
141 3ol1_A Vimentin; structural ge 58.8 1.2E+02 0.0039 28.3 12.2 94 623-760 22-116 (119)
142 1hs7_A Syntaxin VAM3; UP-and-D 58.6 22 0.00076 32.3 6.8 82 527-615 8-93 (97)
143 1tue_A Replication protein E1; 58.6 3 0.0001 43.0 1.2 27 133-159 48-76 (212)
144 2v4h_A NF-kappa-B essential mo 58.2 77 0.0026 29.4 10.3 45 603-651 27-71 (110)
145 2j0s_A ATP-dependent RNA helic 58.0 3.6 0.00012 44.4 1.9 23 134-158 69-91 (410)
146 1gvn_B Zeta; postsegregational 58.0 6 0.00021 41.8 3.5 32 128-159 15-51 (287)
147 2e7s_A RAB guanine nucleotide 57.7 12 0.00041 35.9 5.2 82 557-651 44-133 (135)
148 1hqc_A RUVB; extended AAA-ATPa 57.7 7.3 0.00025 40.7 4.1 46 109-159 9-56 (324)
149 3pfi_A Holliday junction ATP-d 56.0 5.9 0.0002 41.9 3.1 45 110-159 27-73 (338)
150 1s2m_A Putative ATP-dependent 55.5 4 0.00014 43.8 1.7 23 134-158 53-75 (400)
151 2chq_A Replication factor C sm 55.3 4.3 0.00015 42.0 1.8 22 138-159 35-56 (319)
152 4fcw_A Chaperone protein CLPB; 55.1 3.4 0.00012 42.9 1.0 18 142-159 48-65 (311)
153 2z0m_A 337AA long hypothetical 54.9 4.4 0.00015 42.0 1.9 24 134-159 26-49 (337)
154 2dhr_A FTSH; AAA+ protein, hex 54.6 2.9 0.0001 48.1 0.4 51 108-159 27-82 (499)
155 2lw1_A ABC transporter ATP-bin 54.4 24 0.00081 31.2 6.2 29 556-584 19-47 (89)
156 3nmd_A CGMP dependent protein 54.4 21 0.00073 30.8 5.6 48 602-649 21-68 (72)
157 2oto_A M protein; helical coil 54.3 1.5E+02 0.0053 28.4 13.7 32 741-772 46-77 (155)
158 1w5s_A Origin recognition comp 54.1 5.7 0.0002 42.8 2.6 26 134-159 40-70 (412)
159 2fz4_A DNA repair protein RAD2 54.1 4.4 0.00015 41.4 1.6 23 135-159 104-126 (237)
160 2k48_A Nucleoprotein; viral pr 53.8 63 0.0022 29.7 8.9 68 519-587 36-103 (107)
161 2oap_1 GSPE-2, type II secreti 53.3 5.4 0.00018 46.0 2.4 21 137-159 258-278 (511)
162 2i4i_A ATP-dependent RNA helic 52.7 5 0.00017 43.2 1.9 23 134-158 47-69 (417)
163 2ce7_A Cell division protein F 52.7 3.4 0.00012 47.3 0.5 51 108-159 12-67 (476)
164 3hhm_B NISH2 P85alpha; PI3KCA, 52.6 2.7E+02 0.0093 30.7 15.8 32 625-656 223-254 (373)
165 3h1t_A Type I site-specific re 52.3 5.6 0.00019 45.8 2.3 28 131-159 189-216 (590)
166 2ewv_A Twitching motility prot 51.2 3.7 0.00013 45.2 0.6 20 140-159 135-154 (372)
167 3ghg_A Fibrinogen alpha chain; 51.1 30 0.001 39.9 7.8 26 557-582 115-140 (562)
168 3u61_B DNA polymerase accessor 50.6 8.6 0.0003 40.4 3.3 19 141-159 48-66 (324)
169 3ryc_E Stathmin-4; alpha-tubul 50.4 80 0.0027 30.6 9.5 63 799-861 43-122 (143)
170 1qvr_A CLPB protein; coiled co 50.1 5.5 0.00019 48.5 1.8 30 130-159 180-209 (854)
171 3fho_A ATP-dependent RNA helic 49.8 6.5 0.00022 44.6 2.3 24 135-158 152-175 (508)
172 3hhm_B NISH2 P85alpha; PI3KCA, 49.5 74 0.0025 35.3 10.6 59 595-653 121-179 (373)
173 2no2_A HIP-I, huntingtin-inter 49.2 1.6E+02 0.0054 27.0 12.4 18 518-540 2-19 (107)
174 3oiy_A Reverse gyrase helicase 49.1 6 0.00021 43.0 1.8 24 133-158 30-53 (414)
175 1n0w_A DNA repair protein RAD5 49.0 6.1 0.00021 39.2 1.7 29 131-159 11-42 (243)
176 3hws_A ATP-dependent CLP prote 48.9 6 0.00021 42.7 1.8 19 141-159 51-69 (363)
177 2eqb_B RAB guanine nucleotide 48.5 1.6E+02 0.0054 26.8 11.5 70 558-653 25-94 (97)
178 1xti_A Probable ATP-dependent 48.4 6.4 0.00022 41.9 1.8 24 133-158 39-62 (391)
179 3cf2_A TER ATPase, transitiona 48.3 9.4 0.00032 46.5 3.5 51 109-159 201-256 (806)
180 3pvs_A Replication-associated 48.0 5.4 0.00019 45.1 1.2 45 110-159 24-68 (447)
181 3a7p_A Autophagy protein 16; c 47.6 1.5E+02 0.0052 29.0 11.0 41 615-655 90-130 (152)
182 3mq7_A Bone marrow stromal ant 47.4 1.1E+02 0.0037 28.7 9.5 27 746-772 86-112 (121)
183 2v71_A Nuclear distribution pr 47.3 2.4E+02 0.0081 28.5 16.1 16 719-734 156-171 (189)
184 2p5t_B PEZT; postsegregational 47.3 8.1 0.00028 39.6 2.3 17 142-158 33-49 (253)
185 1jr3_A DNA polymerase III subu 47.0 11 0.00038 39.9 3.5 19 141-159 38-56 (373)
186 4b3f_X DNA-binding protein smu 46.8 6.3 0.00022 46.3 1.6 26 133-159 198-223 (646)
187 1rif_A DAR protein, DNA helica 46.7 4.3 0.00015 42.1 0.2 22 136-159 125-146 (282)
188 2ke4_A CDC42-interacting prote 46.6 76 0.0026 28.7 8.3 28 627-654 61-88 (98)
189 1sxj_B Activator 1 37 kDa subu 46.5 7.8 0.00027 40.1 2.1 22 138-159 39-60 (323)
190 3i5x_A ATP-dependent RNA helic 45.9 7.7 0.00026 44.1 2.1 26 133-158 103-128 (563)
191 1ci6_A Transcription factor AT 45.8 23 0.00079 29.5 4.5 39 701-739 21-59 (63)
192 1fuu_A Yeast initiation factor 45.8 4.6 0.00016 43.0 0.2 24 133-158 52-75 (394)
193 2k48_A Nucleoprotein; viral pr 45.8 64 0.0022 29.7 7.6 27 630-656 77-103 (107)
194 2db3_A ATP-dependent RNA helic 45.6 7.4 0.00025 43.1 1.9 23 134-158 88-110 (434)
195 4fla_A Regulation of nuclear P 45.5 1.6E+02 0.0053 28.7 11.0 54 561-638 88-141 (152)
196 1hv8_A Putative ATP-dependent 45.5 7.1 0.00024 40.9 1.6 24 134-158 38-61 (367)
197 3m91_A Proteasome-associated A 45.2 15 0.00051 29.7 3.0 29 745-773 9-37 (51)
198 2w0m_A SSO2452; RECA, SSPF, un 45.2 7.6 0.00026 38.0 1.7 29 131-159 10-41 (235)
199 4a2p_A RIG-I, retinoic acid in 45.0 8.1 0.00028 43.3 2.1 35 810-844 516-551 (556)
200 2v1x_A ATP-dependent DNA helic 44.6 10 0.00035 44.3 2.9 24 133-158 53-76 (591)
201 1sxj_E Activator 1 40 kDa subu 43.8 7.9 0.00027 41.0 1.7 16 144-159 39-54 (354)
202 2cvh_A DNA repair and recombin 43.8 8.2 0.00028 37.7 1.7 29 131-159 7-38 (220)
203 1ojl_A Transcriptional regulat 43.7 9.8 0.00033 40.4 2.4 21 139-159 23-43 (304)
204 2v66_B Nuclear distribution pr 43.4 46 0.0016 30.9 6.5 106 705-832 5-110 (111)
205 3tbk_A RIG-I helicase domain; 43.1 9 0.00031 42.7 2.1 33 812-844 517-550 (555)
206 3vem_A Helicase protein MOM1; 43.0 1E+02 0.0035 28.7 8.7 67 538-618 10-86 (115)
207 3l4q_C Phosphatidylinositol 3- 42.9 1.7E+02 0.006 29.0 11.0 59 595-653 12-70 (170)
208 2ic6_A Nucleocapsid protein; h 42.8 1.3E+02 0.0044 26.4 8.7 60 527-587 7-73 (78)
209 1w36_D RECD, exodeoxyribonucle 41.8 8.1 0.00028 45.3 1.5 19 141-159 164-182 (608)
210 1um8_A ATP-dependent CLP prote 40.9 9.6 0.00033 41.2 1.8 19 141-159 72-90 (376)
211 3c8u_A Fructokinase; YP_612366 40.7 14 0.00047 36.5 2.8 32 128-159 7-40 (208)
212 1x79_B RAB GTPase binding effe 40.6 73 0.0025 29.7 7.3 24 626-649 75-98 (112)
213 4a4z_A Antiviral helicase SKI2 40.5 13 0.00046 46.1 3.2 23 133-157 48-70 (997)
214 1ypw_A Transitional endoplasmi 40.4 12 0.00042 45.3 2.8 52 108-159 200-256 (806)
215 3swk_A Vimentin; cytoskeleton, 40.4 1.7E+02 0.0058 25.7 9.4 82 623-738 2-84 (86)
216 3b9q_A Chloroplast SRP recepto 40.3 14 0.00047 39.5 2.9 17 143-159 102-118 (302)
217 3viq_B Mating-type switching p 40.3 35 0.0012 30.3 4.9 48 562-610 4-51 (85)
218 2fwr_A DNA repair protein RAD2 40.2 9.6 0.00033 42.3 1.7 23 135-159 104-126 (472)
219 4emc_A Monopolin complex subun 40.0 29 0.00099 35.0 4.9 32 620-651 26-57 (190)
220 1wp9_A ATP-dependent RNA helic 39.7 10 0.00035 40.8 1.8 24 133-159 18-41 (494)
221 1c4o_A DNA nucleotide excision 39.6 13 0.00044 44.1 2.8 45 109-159 2-46 (664)
222 4gl2_A Interferon-induced heli 39.6 10 0.00036 44.2 2.0 25 133-159 16-40 (699)
223 3b85_A Phosphate starvation-in 39.5 11 0.00037 38.1 1.8 27 131-159 14-40 (208)
224 3upu_A ATP-dependent DNA helic 39.5 13 0.00044 41.7 2.6 37 118-159 27-63 (459)
225 1zxa_A CGMP-dependent protein 39.2 35 0.0012 29.1 4.5 45 609-653 13-57 (67)
226 3nbx_X ATPase RAVA; AAA+ ATPas 39.2 11 0.00039 43.2 2.1 26 132-159 34-59 (500)
227 4a74_A DNA repair and recombin 38.9 10 0.00036 37.1 1.5 29 131-159 12-43 (231)
228 3lw7_A Adenylate kinase relate 38.8 7.8 0.00027 35.9 0.6 17 143-159 3-19 (179)
229 4gp7_A Metallophosphoesterase; 38.8 7.2 0.00025 37.5 0.3 17 143-159 11-27 (171)
230 3l4q_C Phosphatidylinositol 3- 38.2 3.1E+02 0.011 27.2 18.2 128 517-651 9-154 (170)
231 3m91_A Proteasome-associated A 37.9 39 0.0013 27.3 4.4 40 712-758 11-50 (51)
232 2jlq_A Serine protease subunit 37.9 10 0.00035 42.4 1.5 25 133-158 12-36 (451)
233 4fi5_A Nucleoprotein; structur 37.8 1.4E+02 0.0047 27.8 8.6 53 537-590 41-93 (113)
234 3sqw_A ATP-dependent RNA helic 37.8 12 0.00042 43.0 2.1 26 133-158 52-77 (579)
235 2gk6_A Regulator of nonsense t 37.7 11 0.00037 44.2 1.7 18 142-159 196-213 (624)
236 3lfu_A DNA helicase II; SF1 he 37.1 10 0.00034 44.0 1.2 21 139-159 20-40 (647)
237 3pxi_A Negative regulator of g 37.0 18 0.0006 43.3 3.4 29 131-159 191-219 (758)
238 2ic9_A Nucleocapsid protein; h 37.0 1.5E+02 0.0052 26.8 8.5 50 538-588 25-74 (96)
239 1rz3_A Hypothetical protein rb 36.9 15 0.00052 36.0 2.4 18 142-159 23-40 (201)
240 2ykg_A Probable ATP-dependent 36.6 13 0.00043 43.5 2.0 23 134-158 23-45 (696)
241 4ag6_A VIRB4 ATPase, type IV s 36.5 8.5 0.00029 42.0 0.5 18 142-159 36-53 (392)
242 3e70_C DPA, signal recognition 36.2 17 0.0006 39.3 2.9 18 142-159 130-147 (328)
243 2dgc_A Protein (GCN4); basic d 36.1 39 0.0013 28.2 4.3 32 621-652 30-61 (63)
244 2fxo_A Myosin heavy chain, car 35.9 2.7E+02 0.0094 25.9 15.2 33 621-653 90-122 (129)
245 2dr3_A UPF0273 protein PH0284; 35.7 11 0.00039 37.3 1.3 27 133-159 12-41 (247)
246 2ic6_A Nucleocapsid protein; h 35.3 1.2E+02 0.0042 26.5 7.4 28 629-656 46-73 (78)
247 3pxi_A Negative regulator of g 35.2 18 0.00063 43.1 3.1 17 143-159 523-539 (758)
248 1deb_A APC protein, adenomatou 35.1 1.2E+02 0.0042 24.4 6.7 47 608-654 4-50 (54)
249 3tau_A Guanylate kinase, GMP k 35.0 11 0.00036 37.5 0.8 18 142-159 9-26 (208)
250 3tr0_A Guanylate kinase, GMP k 34.9 9 0.00031 37.1 0.3 17 143-159 9-25 (205)
251 2qag_C Septin-7; cell cycle, c 34.8 9.2 0.00031 43.0 0.4 23 136-158 26-48 (418)
252 1r6b_X CLPA protein; AAA+, N-t 34.7 16 0.00056 43.5 2.6 29 131-159 197-225 (758)
253 3a00_A Guanylate kinase, GMP k 34.6 9.7 0.00033 36.9 0.5 17 143-159 3-19 (186)
254 1qvr_A CLPB protein; coiled co 34.5 20 0.00069 43.5 3.4 18 142-159 589-606 (854)
255 1gm5_A RECG; helicase, replica 33.9 17 0.00058 44.1 2.5 29 131-159 379-407 (780)
256 2r8r_A Sensor protein; KDPD, P 33.9 9.4 0.00032 39.7 0.3 18 142-159 7-24 (228)
257 1e9r_A Conjugal transfer prote 33.9 9.1 0.00031 42.3 0.2 18 141-158 53-70 (437)
258 1sxj_A Activator 1 95 kDa subu 33.8 15 0.00052 41.9 2.0 19 141-159 77-95 (516)
259 2og2_A Putative signal recogni 33.6 21 0.00071 39.3 3.0 17 143-159 159-175 (359)
260 2dgc_A Protein (GCN4); basic d 33.3 26 0.00089 29.2 2.8 30 746-775 31-60 (63)
261 1wlq_A Geminin; coiled-coil; 2 33.1 43 0.0015 29.6 4.2 42 702-743 37-78 (83)
262 3s9g_A Protein hexim1; cyclin 32.9 85 0.0029 28.6 6.2 52 707-772 41-92 (104)
263 2y3a_B Phosphatidylinositol 3- 32.8 51 0.0017 35.6 5.8 61 593-653 11-71 (302)
264 1l8d_A DNA double-strand break 32.8 2.7E+02 0.0091 24.8 11.2 32 622-653 11-42 (112)
265 2qnr_A Septin-2, protein NEDD5 32.7 9.8 0.00033 40.4 0.2 24 136-159 13-36 (301)
266 1ly1_A Polynucleotide kinase; 32.6 11 0.00038 35.4 0.5 16 143-158 4-19 (181)
267 1kgd_A CASK, peripheral plasma 32.3 10 0.00036 36.6 0.3 17 143-159 7-23 (180)
268 1zp6_A Hypothetical protein AT 32.1 10 0.00035 36.3 0.2 18 142-159 10-27 (191)
269 2px0_A Flagellar biosynthesis 31.9 17 0.00059 38.6 1.9 18 142-159 106-123 (296)
270 3s84_A Apolipoprotein A-IV; fo 31.8 4.8E+02 0.016 27.4 13.2 19 516-534 42-60 (273)
271 1t6f_A Geminin; coiled-coil, c 31.7 57 0.002 24.4 4.0 28 621-648 7-34 (37)
272 3trf_A Shikimate kinase, SK; a 31.4 12 0.00041 35.7 0.5 17 143-159 7-23 (185)
273 3htk_A Structural maintenance 31.3 2E+02 0.0067 23.0 7.8 55 516-576 3-57 (60)
274 1lvg_A Guanylate kinase, GMP k 31.2 11 0.00038 37.1 0.3 17 143-159 6-22 (198)
275 1t2k_D Cyclic-AMP-dependent tr 31.2 91 0.0031 25.4 5.8 31 623-653 24-54 (61)
276 1xaw_A Occludin; coiled-coil, 31.1 3.2E+02 0.011 26.3 10.3 24 630-653 111-134 (140)
277 3tnu_A Keratin, type I cytoske 31.0 1.7E+02 0.0059 27.3 8.5 58 800-860 46-103 (131)
278 3sop_A Neuronal-specific septi 31.0 10 0.00036 39.7 0.0 20 140-159 1-20 (270)
279 2oca_A DAR protein, ATP-depend 31.0 13 0.00044 41.7 0.8 16 144-159 131-146 (510)
280 4gkp_A Spindle POLE BODY-assoc 31.0 5.1E+02 0.017 27.6 15.4 251 63-369 9-273 (275)
281 3e1s_A Exodeoxyribonuclease V, 30.9 17 0.00057 42.5 1.7 19 141-159 204-222 (574)
282 1r6b_X CLPA protein; AAA+, N-t 30.8 20 0.0007 42.6 2.5 18 142-159 489-506 (758)
283 1j8m_F SRP54, signal recogniti 30.5 36 0.0012 36.1 4.2 17 143-159 100-116 (297)
284 4emc_A Monopolin complex subun 30.4 94 0.0032 31.4 6.8 26 626-651 11-36 (190)
285 3ghg_A Fibrinogen alpha chain; 30.4 2.3E+02 0.0078 32.8 10.6 14 522-535 54-67 (562)
286 3htk_A Structural maintenance 30.2 2.1E+02 0.0072 22.8 7.8 38 615-652 20-57 (60)
287 3iij_A Coilin-interacting nucl 30.0 13 0.00045 35.4 0.5 18 142-159 12-29 (180)
288 3swk_A Vimentin; cytoskeleton, 30.0 2.4E+02 0.0081 24.7 8.7 81 746-862 1-84 (86)
289 4a2q_A RIG-I, retinoic acid in 30.0 19 0.00065 43.2 2.1 34 811-844 758-792 (797)
290 1qhx_A CPT, protein (chloramph 29.9 13 0.00045 35.1 0.5 18 142-159 4-21 (178)
291 1ye8_A Protein THEP1, hypothet 29.8 12 0.00041 36.6 0.3 16 144-159 3-18 (178)
292 2xzl_A ATP-dependent helicase 29.7 17 0.00059 44.1 1.6 18 142-159 376-393 (802)
293 3oja_A Leucine-rich immune mol 29.7 4.9E+02 0.017 28.8 13.6 60 596-655 406-469 (487)
294 1uii_A Geminin; human, DNA rep 29.7 40 0.0014 29.8 3.4 37 702-738 45-81 (83)
295 1rj9_A FTSY, signal recognitio 29.7 14 0.00049 39.5 0.8 18 142-159 103-120 (304)
296 2j41_A Guanylate kinase; GMP, 29.2 13 0.00044 36.0 0.3 17 143-159 8-24 (207)
297 3tnu_A Keratin, type I cytoske 29.2 3.5E+02 0.012 25.2 12.2 26 557-582 43-68 (131)
298 2wjy_A Regulator of nonsense t 29.1 18 0.00063 43.9 1.7 18 142-159 372-389 (800)
299 2ehv_A Hypothetical protein PH 29.1 13 0.00046 36.9 0.5 17 143-159 32-48 (251)
300 1gmj_A ATPase inhibitor; coile 29.0 1.2E+02 0.004 27.0 6.3 21 560-580 59-79 (84)
301 1uaa_A REP helicase, protein ( 29.0 15 0.00053 43.1 1.0 20 140-159 14-33 (673)
302 1odf_A YGR205W, hypothetical 3 28.8 24 0.00081 37.5 2.3 37 123-159 11-49 (290)
303 3ol1_A Vimentin; structural ge 28.7 3.5E+02 0.012 24.9 12.9 31 621-651 69-99 (119)
304 4a2w_A RIG-I, retinoic acid in 28.6 20 0.00067 44.2 1.9 24 134-159 258-281 (936)
305 2qen_A Walker-type ATPase; unk 28.6 22 0.00077 36.9 2.1 18 142-159 32-49 (350)
306 3tnu_B Keratin, type II cytosk 28.5 2E+02 0.007 26.7 8.5 57 801-860 45-101 (129)
307 3nmd_A CGMP dependent protein 28.2 1.1E+02 0.0038 26.3 5.9 36 616-651 28-63 (72)
308 1lkx_A Myosin IE heavy chain; 28.2 26 0.00089 42.0 2.8 35 123-158 76-111 (697)
309 3lnc_A Guanylate kinase, GMP k 28.2 16 0.00055 36.5 0.8 17 143-159 29-45 (231)
310 3mq9_A Bone marrow stromal ant 28.1 2.5E+02 0.0084 31.2 10.7 10 700-709 461-470 (471)
311 1oyw_A RECQ helicase, ATP-depe 28.1 13 0.00044 42.6 0.1 25 133-159 34-58 (523)
312 2bdt_A BH3686; alpha-beta prot 28.0 14 0.00047 35.6 0.3 17 143-159 4-20 (189)
313 2yhs_A FTSY, cell division pro 27.9 26 0.00088 40.5 2.6 17 143-159 295-311 (503)
314 2v6i_A RNA helicase; membrane, 27.9 20 0.00067 39.9 1.6 16 143-158 4-19 (431)
315 2gza_A Type IV secretion syste 27.4 15 0.0005 40.2 0.4 21 137-159 173-193 (361)
316 1zxa_A CGMP-dependent protein 27.4 70 0.0024 27.2 4.5 39 800-838 12-50 (67)
317 3tnu_B Keratin, type II cytosk 27.3 3.8E+02 0.013 24.9 12.2 26 558-583 42-67 (129)
318 1a93_B MAX protein, coiled coi 27.2 64 0.0022 24.0 3.6 23 560-582 8-30 (34)
319 2pt7_A CAG-ALFA; ATPase, prote 27.1 15 0.00051 39.7 0.4 21 137-159 169-189 (330)
320 1kht_A Adenylate kinase; phosp 27.0 16 0.00054 34.7 0.6 17 143-159 5-21 (192)
321 2z83_A Helicase/nucleoside tri 26.9 21 0.00073 40.0 1.6 16 143-158 23-38 (459)
322 2y3a_B Phosphatidylinositol 3- 26.9 6.1E+02 0.021 27.1 13.3 113 517-656 31-146 (302)
323 3kl4_A SRP54, signal recogniti 26.7 38 0.0013 38.3 3.6 18 142-159 98-115 (433)
324 1w9i_A Myosin II heavy chain; 26.7 29 0.00098 42.1 2.8 35 123-158 154-189 (770)
325 3kta_A Chromosome segregation 26.7 15 0.00052 35.0 0.3 16 143-158 28-43 (182)
326 2yy0_A C-MYC-binding protein; 26.7 96 0.0033 25.0 5.0 31 621-651 19-49 (53)
327 1kag_A SKI, shikimate kinase I 26.5 17 0.00057 34.2 0.6 17 143-159 6-22 (173)
328 2orw_A Thymidine kinase; TMTK, 26.4 14 0.0005 36.2 0.1 17 143-159 5-21 (184)
329 3c3g_A Alpha/beta peptide with 26.4 1E+02 0.0036 22.7 4.5 27 625-651 4-30 (33)
330 2wt7_A Proto-oncogene protein 26.2 1.2E+02 0.0042 24.9 5.8 30 624-653 26-55 (63)
331 2zj8_A DNA helicase, putative 26.1 17 0.00058 43.0 0.7 21 136-158 36-56 (720)
332 2v26_A Myosin VI; calmodulin-b 26.1 30 0.001 42.1 2.8 35 123-158 122-157 (784)
333 3vaa_A Shikimate kinase, SK; s 26.1 17 0.00058 35.5 0.6 17 143-159 27-43 (199)
334 3uie_A Adenylyl-sulfate kinase 25.8 20 0.00068 35.0 1.0 19 141-159 25-43 (200)
335 2eyq_A TRCF, transcription-rep 25.7 34 0.0012 43.2 3.4 28 131-158 614-641 (1151)
336 1znw_A Guanylate kinase, GMP k 25.7 16 0.00054 36.0 0.3 17 143-159 22-38 (207)
337 2bbw_A Adenylate kinase 4, AK4 25.7 16 0.00055 36.9 0.3 18 142-159 28-45 (246)
338 3a7p_A Autophagy protein 16; c 25.7 3.6E+02 0.012 26.4 9.7 19 561-579 70-88 (152)
339 3cve_A Homer protein homolog 1 25.6 2.5E+02 0.0085 24.2 7.6 29 626-654 5-33 (72)
340 1g8x_A Myosin II heavy chain f 25.5 29 0.001 43.3 2.6 35 123-158 154-189 (1010)
341 1yks_A Genome polyprotein [con 25.4 22 0.00075 39.7 1.4 21 136-158 5-25 (440)
342 2fna_A Conserved hypothetical 25.4 19 0.00066 37.4 0.9 18 142-159 31-48 (357)
343 3kb2_A SPBC2 prophage-derived 25.4 18 0.00061 33.7 0.6 17 143-159 3-19 (173)
344 2zxx_A Geminin; coiled-coil, c 25.4 99 0.0034 27.1 5.2 40 616-655 29-68 (79)
345 1moz_A ARL1, ADP-ribosylation 25.4 27 0.00091 32.6 1.8 29 131-159 7-36 (183)
346 2i3b_A HCR-ntpase, human cance 25.4 17 0.00057 36.1 0.4 17 143-159 3-19 (189)
347 2ze6_A Isopentenyl transferase 25.3 17 0.0006 37.3 0.5 16 143-158 3-18 (253)
348 2ycu_A Non muscle myosin 2C, a 25.3 31 0.0011 43.0 2.8 35 123-158 128-163 (995)
349 1z6g_A Guanylate kinase; struc 25.3 16 0.00056 36.5 0.3 16 144-159 26-41 (218)
350 1m1j_B Fibrinogen beta chain; 25.3 6.9E+02 0.024 28.5 13.5 57 520-582 88-144 (464)
351 1l8d_A DNA double-strand break 25.1 3.6E+02 0.012 23.9 11.0 83 556-652 14-102 (112)
352 3mq7_A Bone marrow stromal ant 25.0 4.3E+02 0.015 24.7 11.0 21 636-656 72-92 (121)
353 3dm5_A SRP54, signal recogniti 24.9 40 0.0014 38.3 3.4 19 141-159 100-118 (443)
354 2v3c_C SRP54, signal recogniti 24.9 53 0.0018 36.9 4.4 17 143-159 101-117 (432)
355 1gku_B Reverse gyrase, TOP-RG; 24.8 30 0.001 43.3 2.6 21 134-156 66-86 (1054)
356 3u59_A Tropomyosin beta chain; 24.6 3.7E+02 0.013 23.9 11.9 27 556-582 27-53 (101)
357 3m9b_A Proteasome-associated A 24.6 59 0.002 34.2 4.3 37 714-764 58-94 (251)
358 1x79_B RAB GTPase binding effe 24.5 3.2E+02 0.011 25.4 8.7 24 625-648 81-104 (112)
359 3ghg_C Fibrinogen gamma chain; 24.5 3.2E+02 0.011 30.7 10.5 91 515-615 31-137 (411)
360 2ga8_A Hypothetical 39.9 kDa p 24.5 37 0.0012 37.6 2.9 34 126-159 5-42 (359)
361 3he5_A Synzip1; heterodimeric 24.4 1.7E+02 0.0057 22.6 5.6 25 830-854 20-44 (49)
362 2d7d_A Uvrabc system protein B 24.4 34 0.0012 40.4 2.8 47 108-159 4-50 (661)
363 2rhm_A Putative kinase; P-loop 24.3 18 0.00062 34.5 0.4 17 142-158 6-22 (193)
364 1w7j_A Myosin VA; motor protei 24.3 33 0.0011 41.7 2.8 35 123-158 138-173 (795)
365 1v5w_A DMC1, meiotic recombina 24.3 27 0.00091 37.7 1.8 30 130-159 108-140 (343)
366 3u1c_A Tropomyosin alpha-1 cha 24.3 3.9E+02 0.013 23.9 11.9 28 555-582 26-53 (101)
367 3c3f_A Alpha/beta peptide with 24.1 1.2E+02 0.0041 22.4 4.5 27 625-651 5-31 (34)
368 1kk8_A Myosin heavy chain, str 24.1 31 0.0011 42.3 2.4 35 123-158 151-186 (837)
369 1tev_A UMP-CMP kinase; ploop, 24.1 19 0.00066 34.1 0.5 16 143-158 5-20 (196)
370 2e7s_A RAB guanine nucleotide 24.0 3.3E+02 0.011 26.1 9.0 108 701-840 23-130 (135)
371 1knq_A Gluconate kinase; ALFA/ 23.9 18 0.00063 34.1 0.3 17 143-159 10-26 (175)
372 4db1_A Myosin-7; S1DC, cardiac 23.7 35 0.0012 41.5 2.8 35 123-158 153-188 (783)
373 3cm0_A Adenylate kinase; ATP-b 23.6 20 0.00069 34.0 0.6 17 143-159 6-22 (186)
374 1ic2_A Tropomyosin alpha chain 23.5 3.5E+02 0.012 23.2 8.6 59 599-657 8-70 (81)
375 3m9b_A Proteasome-associated A 23.5 71 0.0024 33.6 4.7 35 615-649 62-96 (251)
376 2oqq_A Transcription factor HY 23.4 1.7E+02 0.0057 22.7 5.4 34 615-651 7-40 (42)
377 2xau_A PRE-mRNA-splicing facto 23.3 22 0.00074 43.0 0.9 17 142-158 110-126 (773)
378 2lw1_A ABC transporter ATP-bin 23.3 2.7E+02 0.0092 24.3 7.8 22 563-584 19-40 (89)
379 2dq0_A Seryl-tRNA synthetase; 23.3 3.3E+02 0.011 30.7 10.6 71 517-587 30-104 (455)
380 2qor_A Guanylate kinase; phosp 23.2 19 0.00065 35.3 0.3 17 143-159 14-30 (204)
381 1svm_A Large T antigen; AAA+ f 23.2 36 0.0012 37.7 2.5 18 142-159 170-187 (377)
382 2yy0_A C-MYC-binding protein; 23.0 92 0.0032 25.1 4.3 33 550-582 17-49 (53)
383 2vli_A Antibiotic resistance p 23.0 24 0.00082 33.3 1.0 18 142-159 6-23 (183)
384 1gu4_A CAAT/enhancer binding p 22.9 67 0.0023 28.0 3.7 39 702-740 35-73 (78)
385 3rc3_A ATP-dependent RNA helic 22.8 20 0.0007 42.7 0.5 16 143-158 157-172 (677)
386 1y63_A LMAJ004144AAA protein; 22.8 21 0.00072 34.4 0.5 17 143-159 12-28 (184)
387 2z43_A DNA repair and recombin 22.7 28 0.00097 37.0 1.6 30 130-159 93-125 (324)
388 2r2a_A Uncharacterized protein 22.7 20 0.00067 36.0 0.3 17 143-159 7-23 (199)
389 2p6r_A Afuhel308 helicase; pro 22.7 19 0.00064 42.5 0.1 31 118-158 27-57 (702)
390 1a5t_A Delta prime, HOLB; zinc 22.6 41 0.0014 35.9 2.8 28 132-159 14-42 (334)
391 1cr0_A DNA primase/helicase; R 22.6 22 0.00076 36.9 0.7 27 133-159 25-53 (296)
392 1gmj_A ATPase inhibitor; coile 22.6 1.8E+02 0.0062 25.7 6.3 20 844-863 61-80 (84)
393 2va8_A SSO2462, SKI2-type heli 22.5 28 0.00095 41.0 1.6 17 142-158 47-63 (715)
394 1f2t_A RAD50 ABC-ATPase; DNA d 22.5 21 0.00072 33.8 0.4 17 143-159 25-41 (149)
395 3r6n_A Desmoplakin; spectrin r 22.3 8.2E+02 0.028 27.5 13.5 82 523-604 131-217 (450)
396 2eqb_B RAB guanine nucleotide 22.3 4.4E+02 0.015 23.9 10.4 55 704-758 6-60 (97)
397 1e6c_A Shikimate kinase; phosp 22.3 22 0.00075 33.3 0.5 17 143-159 4-20 (173)
398 2xgj_A ATP-dependent RNA helic 22.2 27 0.00094 43.5 1.5 21 136-158 98-118 (1010)
399 4anj_A Unconventional myosin-V 22.1 39 0.0013 42.4 2.8 35 123-158 126-161 (1052)
400 1nks_A Adenylate kinase; therm 22.0 22 0.00075 33.7 0.4 17 143-159 3-19 (194)
401 3pe0_A Plectin; cytoskeleton, 22.0 6.6E+02 0.023 26.2 12.0 65 520-584 43-112 (283)
402 3l9o_A ATP-dependent RNA helic 22.0 27 0.00092 44.0 1.4 23 134-158 194-216 (1108)
403 1uf9_A TT1252 protein; P-loop, 22.0 25 0.00084 33.8 0.8 21 138-158 5-25 (203)
404 1deq_A Fibrinogen (alpha chain 21.9 6.2E+02 0.021 28.2 11.8 98 517-632 69-190 (390)
405 2b8t_A Thymidine kinase; deoxy 21.9 21 0.00072 36.6 0.3 18 142-159 13-30 (223)
406 3t5d_A Septin-7; GTP-binding p 21.9 19 0.00066 37.2 0.0 22 137-158 4-25 (274)
407 1vma_A Cell division protein F 21.8 21 0.00071 38.3 0.3 17 143-159 106-122 (306)
408 2i1q_A DNA repair and recombin 21.8 30 0.001 36.6 1.5 30 130-159 84-116 (322)
409 2v4h_A NF-kappa-B essential mo 21.8 3.9E+02 0.013 24.7 8.7 19 517-535 23-41 (110)
410 3qne_A Seryl-tRNA synthetase, 21.4 2.8E+02 0.0095 31.8 9.4 60 526-588 48-107 (485)
411 3tso_C RAB11 family-interactin 21.4 1.3E+02 0.0043 26.2 5.0 31 554-584 16-46 (75)
412 2jee_A YIIU; FTSZ, septum, coi 21.3 4.2E+02 0.014 23.3 9.6 24 633-656 53-76 (81)
413 3k1j_A LON protease, ATP-depen 21.2 38 0.0013 39.4 2.3 41 109-159 38-78 (604)
414 3efg_A Protein SLYX homolog; x 21.2 2.2E+02 0.0074 24.7 6.6 45 610-657 13-57 (78)
415 1pjr_A PCRA; DNA repair, DNA r 21.2 26 0.0009 41.7 1.0 20 140-159 23-42 (724)
416 2qag_A Septin-2, protein NEDD5 21.2 24 0.00082 38.5 0.6 24 136-159 32-55 (361)
417 2iyv_A Shikimate kinase, SK; t 21.1 24 0.00082 33.6 0.5 16 143-158 4-19 (184)
418 3iv1_A Tumor susceptibility ge 21.1 1.7E+02 0.0057 25.7 5.7 44 805-851 34-77 (78)
419 1hjb_A Ccaat/enhancer binding 21.1 80 0.0027 28.1 3.8 39 702-740 35-73 (87)
420 2oa5_A Hypothetical protein BQ 21.0 48 0.0016 30.8 2.4 26 551-576 7-32 (110)
421 3m6a_A ATP-dependent protease 21.0 22 0.00076 41.0 0.3 19 141-159 108-126 (543)
422 2bwj_A Adenylate kinase 5; pho 21.0 23 0.00079 33.9 0.4 16 143-158 14-29 (199)
423 2wvr_A Geminin; DNA replicatio 20.9 80 0.0027 32.2 4.2 48 702-760 114-161 (209)
424 1w4r_A Thymidine kinase; type 20.9 24 0.00081 35.8 0.4 26 133-158 12-38 (195)
425 1via_A Shikimate kinase; struc 20.9 25 0.00085 33.3 0.6 16 143-158 6-21 (175)
426 4fi5_A Nucleoprotein; structur 20.8 2E+02 0.0068 26.8 6.4 31 627-657 61-91 (113)
427 3c3g_A Alpha/beta peptide with 20.6 49 0.0017 24.3 1.9 28 748-775 3-30 (33)
428 1m1j_C Fibrinogen gamma chain; 20.6 3.9E+02 0.013 29.9 10.2 84 515-611 31-130 (409)
429 2zr9_A Protein RECA, recombina 20.6 33 0.0011 37.3 1.6 29 131-159 47-79 (349)
430 2ic9_A Nucleocapsid protein; h 20.5 2.1E+02 0.0072 25.9 6.4 30 628-657 45-74 (96)
431 4eun_A Thermoresistant glucoki 20.4 24 0.00081 34.5 0.3 17 143-159 31-47 (200)
432 3t61_A Gluconokinase; PSI-biol 20.4 26 0.00087 34.1 0.6 19 141-159 18-36 (202)
433 1pzn_A RAD51, DNA repair and r 20.4 34 0.0012 37.1 1.6 30 130-159 117-149 (349)
434 1wt6_A Myotonin-protein kinase 20.3 2.4E+02 0.0083 24.8 6.6 38 616-653 33-70 (81)
435 1wt6_A Myotonin-protein kinase 20.3 4.4E+02 0.015 23.1 8.7 22 621-642 52-73 (81)
436 1ik9_A DNA repair protein XRCC 20.3 6.4E+02 0.022 25.6 11.0 52 596-657 117-168 (213)
437 3asz_A Uridine kinase; cytidin 20.2 23 0.00078 34.6 0.1 17 143-159 8-24 (211)
438 3iox_A AGI/II, PA; alpha helix 20.1 9.8E+02 0.034 27.5 13.3 35 830-864 76-110 (497)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=6.2e-84 Score=715.75 Aligned_cols=322 Identities=40% Similarity=0.646 Sum_probs=267.1
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEE-ecC---CCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCC
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEEIAW-YAD---GETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~~~~-~~d---~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (878)
.+++|+|+|||||+++.|...+...++ .++ ...+... .+.|.||+||+++++|++||+.++.|+|+++|+||
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 84 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY 84 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence 468999999999999999888775433 333 3445443 47899999999999999999999999999999999
Q ss_pred CcceeeecccCCCCcccccCC--------------------------CceeEEEEEeeeeecceeeecCCCCCCCcceee
Q 002808 141 NGTIFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRE 194 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~--------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ire 194 (878)
|+||||||||||||||||+|+ +.+|.|+|||+|||||+|+|||++...++.|++
T Consensus 85 n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e 164 (365)
T 2y65_A 85 NGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHE 164 (365)
T ss_dssp CEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEE
T ss_pred ceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEEE
Confidence 999999999999999999863 236999999999999999999999888999999
Q ss_pred cCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecC
Q 002808 195 DSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLA 273 (878)
Q Consensus 195 d~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLA 273 (878)
|+. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+|||||
T Consensus 165 ~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLA 240 (365)
T 2y65_A 165 DKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE----NQKKLSGKLYLVDLA 240 (365)
T ss_dssp CSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT----TCCEEEEEEEEEECC
T ss_pred CCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC----CCCEeEEEEEEEECC
Confidence 986 489999999999999999999999999999999999999999999999999876432 234678999999999
Q ss_pred CCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002808 274 GSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (878)
Q Consensus 274 GSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eET 352 (878)
|||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||
T Consensus 241 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ET 320 (365)
T 2y65_A 241 GSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESET 320 (365)
T ss_dssp CCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHH
T ss_pred CCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHH
Confidence 9999 678999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Q 002808 353 HNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSAL 395 (878)
Q Consensus 353 LsTLrFAsRak~Ikn~~~~N~~~~~~~~l~~~le~e~~~~~~l 395 (878)
++||+||+|||.|+|.|.+|...+. ..|+++++++.+..+.|
T Consensus 321 l~TL~fA~rak~I~n~~~~n~~~~~-~~~~~~~~~e~~~~~~L 362 (365)
T 2y65_A 321 KSTLDFGRRAKTVKNVVCVNEELTA-EEWKRRYEKEKEKNARL 362 (365)
T ss_dssp HHHHHHHHHHTTCEEECCCEEECCS-HHHHHC-----------
T ss_pred HHHHHHHHHHhcccCcceeCCCCCH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999975433 23555555554443333
No 2
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.6e-83 Score=708.69 Aligned_cols=307 Identities=41% Similarity=0.627 Sum_probs=282.2
Q ss_pred CCCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcc
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT 143 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t 143 (878)
+.++|+|+|||||++..|...+.. ++...++..+.+........|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 368999999999999999887765 4445555666666555678999999999999999999999999999999999999
Q ss_pred eeeecccCCCCcccccCC---------------------------CceeEEEEEeeeeecceeeecCCCCCCCcceeecC
Q 002808 144 IFAYGVTSSGKTHTMHTP---------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS 196 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~g~---------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~ 196 (878)
|||||||||||||||+|+ +.+|.|+|||+|||||+|+|||++....+.|++++
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~ 163 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK 163 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence 999999999999999874 12689999999999999999999998899999998
Q ss_pred C-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCC
Q 002808 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (878)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGS 275 (878)
. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+|||||||
T Consensus 164 ~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLAGS 239 (355)
T 1goj_A 164 NRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE----TGSAKSGQLFLVDLAGS 239 (355)
T ss_dssp TTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT----TTEEEEEEEEEEECCCC
T ss_pred CCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC----CCceeeeEEEEEECCCC
Confidence 5 599999999999999999999999999999999999999999999999999876432 23567899999999999
Q ss_pred CC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHH
Q 002808 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHN 354 (878)
Q Consensus 276 Er-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLs 354 (878)
|| .++++.|.+++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||++
T Consensus 240 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~ 319 (355)
T 1goj_A 240 EKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLS 319 (355)
T ss_dssp SCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHH
Confidence 99 67889999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccccccc
Q 002808 355 TLKFAHRAKHIEILAAQNKLE 375 (878)
Q Consensus 355 TLrFAsRak~Ikn~~~~N~~~ 375 (878)
||+||+|||.|+|.|.+|...
T Consensus 320 TL~fA~rak~I~n~~~vn~~~ 340 (355)
T 1goj_A 320 TLRFGMRAKSIKNKAKVNAEL 340 (355)
T ss_dssp HHHHHHHHHTCBCCCCCCSSS
T ss_pred HHHHHHHHhhccCCceeCCCC
Confidence 999999999999999999743
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1e-82 Score=706.88 Aligned_cols=309 Identities=40% Similarity=0.608 Sum_probs=265.2
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEE--EecCCCEEEeCCC-----CCceeEEeccccCCCCcchhHHHHHHHHHHHHh
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEEIA--WYADGETILRNED-----NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~~~--~~~d~~~i~~~~~-----~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (878)
...++|+|+|||||++..|...+...+ +..+...+.+..+ ...+.|.||+||+++++|++||+.+++|+|+++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 97 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSV 97 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHH
Confidence 447899999999999999988776533 3344455554432 235789999999999999999999999999999
Q ss_pred hcCCCcceeeecccCCCCcccccCC-------------------------CceeEEEEEeeeeecceeeecCCCCC-CCc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMHTP-------------------------NREFLLRVSYLEIYNEVVNDLLNPAG-QNL 190 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~-------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~-~~L 190 (878)
|+|||+||||||||||||||||+|. +..|.|+|||+|||||+|+|||++.. ..+
T Consensus 98 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l 177 (372)
T 3b6u_A 98 LQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRL 177 (372)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCB
T ss_pred hCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCc
Confidence 9999999999999999999999863 24699999999999999999998764 579
Q ss_pred ceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeE
Q 002808 191 RIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (878)
Q Consensus 191 ~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~L 269 (878)
.|++++. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.....+ .......|+|+|
T Consensus 178 ~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-~~~~~~~skL~l 256 (372)
T 3b6u_A 178 ELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD-GENHIRVGKLNL 256 (372)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC------CCCEEEEEEEE
T ss_pred eEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCC-CCcceEEEEEEE
Confidence 9999986 59999999999999999999999999999999999999999999999999987653322 224567899999
Q ss_pred eecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCC
Q 002808 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSS 348 (878)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~ 348 (878)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 257 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~ 336 (372)
T 3b6u_A 257 VDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYN 336 (372)
T ss_dssp EECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccC
Confidence 99999999 67889999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccccccc
Q 002808 349 SEETHNTLKFAHRAKHIEILAAQNK 373 (878)
Q Consensus 349 ~eETLsTLrFAsRak~Ikn~~~~N~ 373 (878)
++||++||+||+|||+|+|.|.+|+
T Consensus 337 ~~ETlsTLrfA~rak~I~n~~~~n~ 361 (372)
T 3b6u_A 337 VEETLTTLRYANRAKNIKNKPRVNE 361 (372)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCC
T ss_pred HHHHHHHHHHHHHHhhccccceecC
Confidence 9999999999999999999999996
No 4
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.7e-82 Score=719.38 Aligned_cols=310 Identities=37% Similarity=0.559 Sum_probs=255.3
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEEEecCC--CEEEeCCC----------------CCceeEEeccccCC-------
Q 002808 63 PSSKENVTVTVRFRPLSPREIRQGEEIAWYADG--ETILRNED----------------NPSIAYAYDRVFGP------- 117 (878)
Q Consensus 63 ~~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~--~~i~~~~~----------------~~~~~F~FD~VF~~------- 117 (878)
.+..++|+|+|||||++++|...+..+++..++ ..+.+..+ ...+.|+||+||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 345789999999999999998877654443332 22222111 12578999999976
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCcccccCC--------------------------CceeEEEEEe
Q 002808 118 TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSY 171 (878)
Q Consensus 118 ~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~--------------------------~~ef~V~vS~ 171 (878)
.++|++||+.++.|+|+++|+|||+||||||||||||||||+|. +..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 48999999999999999999999999999999999999999853 3579999999
Q ss_pred eeeecceeeecCCCCC-----CCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEE
Q 002808 172 LEIYNEVVNDLLNPAG-----QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFT 245 (878)
Q Consensus 172 lEIYnE~I~DLL~p~~-----~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~Ift 245 (878)
+|||||.|+|||++.. ..|.|++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 9999999999998732 3599999985 599999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCceeeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCC------------
Q 002808 246 LTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA------------ 312 (878)
Q Consensus 246 I~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~------------ 312 (878)
|+|++..............|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++.
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 99987654333333456789999999999999 67889999999999999999999999999987542
Q ss_pred ---------CCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHhcccccccccccc
Q 002808 313 ---------THIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKL 374 (878)
Q Consensus 313 ---------~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~~ 374 (878)
.|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|.|++|++
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999997 599999999999999999999999974
No 5
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.2e-82 Score=704.07 Aligned_cols=308 Identities=37% Similarity=0.578 Sum_probs=258.3
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCCEE-EeCCCC---CceeEEeccccCCC--------CcchhHHHHHHHHHH
Q 002808 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETI-LRNEDN---PSIAYAYDRVFGPT--------TTTRHVYDIAAQHVV 133 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i-~~~~~~---~~~~F~FD~VF~~~--------atQeeVY~~~~~plV 133 (878)
.++|+|+|||||++..|...+...++..++..+ +.++.. ..+.|.||+||++. ++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 468999999999999998877765554444444 433321 35789999999987 899999999999999
Q ss_pred HHhhcCCCcceeeecccCCCCcccccCC--------------------------CceeEEEEEeeeeecceeeecCCCCC
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAG 187 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~g~--------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~ 187 (878)
+++|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||+|..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 9999999999999999999999999864 23589999999999999999999865
Q ss_pred -CCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeee
Q 002808 188 -QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLS 265 (878)
Q Consensus 188 -~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~S 265 (878)
..|.|++++. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..............|
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 242 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEe
Confidence 5799999995 69999999999999999999999999999999999999999999999999987644333333456789
Q ss_pred eeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcC-----------CCCCccCCCCchhhhhhccCCCC
Q 002808 266 QLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-----------RATHIPYRDSKLTRLLQSSLSGH 333 (878)
Q Consensus 266 kL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~-----------k~~hIPYRdSKLTrLLqdsLGGn 333 (878)
+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||
T Consensus 243 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 322 (366)
T 2zfi_A 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN 322 (366)
T ss_dssp EEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTT
T ss_pred EEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCC
Confidence 999999999999 678899999999999999999999999999863 35799999999999999999999
Q ss_pred ccceeEEeeCCCCCChHHHHHHHHHHHHhccccccccccc
Q 002808 334 GRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (878)
Q Consensus 334 skT~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~ 373 (878)
|+|+|||||||+..+++||++||+||+|||+|+|.|.++.
T Consensus 323 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 323 SRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999885
No 6
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=6.1e-82 Score=696.35 Aligned_cols=305 Identities=40% Similarity=0.618 Sum_probs=249.2
Q ss_pred CCCeEEEEecCCCChhhhccCCeE--EEecCCCEEEeCCC----------CCceeEEeccccCCCCcchhHHHHHHHHHH
Q 002808 66 KENVTVTVRFRPLSPREIRQGEEI--AWYADGETILRNED----------NPSIAYAYDRVFGPTTTTRHVYDIAAQHVV 133 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~~--~~~~d~~~i~~~~~----------~~~~~F~FD~VF~~~atQeeVY~~~~~plV 133 (878)
.++|+|+|||||+++.|...+... .+..+...+.+..+ ...+.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 578999999999999998777643 33344445555432 235789999999999999999999999999
Q ss_pred HHhhcCCCcceeeecccCCCCcccccCC-----------------------CceeEEEEEeeeeecceeeecCCCCCCCc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNL 190 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~g~-----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L 190 (878)
+++|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++ ...+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 9999999999999999999999999864 346999999999999999999985 3579
Q ss_pred ceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeE
Q 002808 191 RIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (878)
Q Consensus 191 ~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~L 269 (878)
.|++|+. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... .......|+|+|
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~~~skl~l 239 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE--NKEVIRVGKLNL 239 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC------CEEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC--CCccEEEEEEEE
Confidence 9999985 5999999999999999999999999999999999999999999999999998764332 234567899999
Q ss_pred eecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCC
Q 002808 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSS 348 (878)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~ 348 (878)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+
T Consensus 240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 318 (350)
T 2vvg_A 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTN 318 (350)
T ss_dssp EECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCcccc
Confidence 99999999 6788999999999999999999999999999975 899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccccccccccc
Q 002808 349 SEETHNTLKFAHRAKHIEILAAQNKL 374 (878)
Q Consensus 349 ~eETLsTLrFAsRak~Ikn~~~~N~~ 374 (878)
++||++||+||+|||+|+|.|.+|+-
T Consensus 319 ~~ETl~TL~fA~rak~i~n~~~~n~~ 344 (350)
T 2vvg_A 319 YDETMSTLRYADRAKQIKNKPRINED 344 (350)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCBS
T ss_pred HHHHHHHHHHHHHHhhccccceecCC
Confidence 99999999999999999999999963
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-81 Score=693.14 Aligned_cols=307 Identities=48% Similarity=0.729 Sum_probs=267.2
Q ss_pred CCCeEEEEecCCCChhhhccCCe--EEEecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcc
Q 002808 66 KENVTVTVRFRPLSPREIRQGEE--IAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT 143 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~--~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t 143 (878)
.++|+|+|||||++..|...+.. +.|..++..+.... ..+.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~--~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD--GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT--SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC--CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 68999999999999999876654 44555566665432 356899999999999999999999999999999999999
Q ss_pred eeeecccCCCCcccccCC----------------------CceeEEEEEeeeeecceeeecCCCCC--CCcceeecCCC-
Q 002808 144 IFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAG--QNLRIREDSQG- 198 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~g~----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~--~~L~Ired~~G- 198 (878)
|||||||||||||||+|+ +..|.|+|||+|||||+|+|||++.. .+|.|++|+.|
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~ 160 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN 160 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCC
Confidence 999999999999999864 34699999999999999999998754 57999999865
Q ss_pred eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCC-CCceeeeeeeeEeecCCCCC
Q 002808 199 TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENS-AGEAVNLSQLHLIDLAGSES 277 (878)
Q Consensus 199 ~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~-~~~~~~~SkL~LVDLAGSEr 277 (878)
+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|++....... .......|+|+|||||||||
T Consensus 161 ~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 240 (349)
T 1t5c_A 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSER 240 (349)
T ss_dssp EEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGG
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999876543321 22356789999999999999
Q ss_pred -ccccccchhhhhhhhccccHHHHHHHHHHhhcCC-CCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHH
Q 002808 278 -SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNT 355 (878)
Q Consensus 278 -~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k-~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsT 355 (878)
.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||||||+ +++||++|
T Consensus 241 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsT 318 (349)
T 1t5c_A 241 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTA 318 (349)
T ss_dssp TC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHH
T ss_pred ccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHH
Confidence 6788999999999999999999999999999875 3699999999999999999999999999999997 58999999
Q ss_pred HHHHHHhcccccccccccccc
Q 002808 356 LKFAHRAKHIEILAAQNKLED 376 (878)
Q Consensus 356 LrFAsRak~Ikn~~~~N~~~~ 376 (878)
|+||+|||+|+|.|.+|+..+
T Consensus 319 L~fA~rak~I~n~~~vn~~~~ 339 (349)
T 1t5c_A 319 LQFASTAKYMKNTPYVNEVST 339 (349)
T ss_dssp HHHHHHHTTCCCCCCCCEEC-
T ss_pred HHHHHHHhhcccCceeccCCC
Confidence 999999999999999997543
No 8
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.2e-82 Score=703.27 Aligned_cols=311 Identities=33% Similarity=0.492 Sum_probs=234.0
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeE-EEecCCCEEEeCCC---CCceeEEeccccCCCCcchhHHHHHHHHHHHHhhc
Q 002808 63 PSSKENVTVTVRFRPLSPREIRQGEEI-AWYADGETILRNED---NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD 138 (878)
Q Consensus 63 ~~~~~~IkV~VRVRPl~~~E~~~g~~~-~~~~d~~~i~~~~~---~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~ 138 (878)
....++|+|+|||||+++.|...+... +...++..+.+... .....|.||+||+++++|++||+.++.|+|+++|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 96 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence 344789999999999999997665443 33344444433221 23568999999999999999999999999999999
Q ss_pred CCCcceeeecccCCCCcccccCC--------------------------CceeEEEEEeeeeecceeeecCCCCCCCcce
Q 002808 139 GINGTIFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRI 192 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~g~--------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~I 192 (878)
|||+||||||||||||||||+|+ ...|.|+|||+|||||+|+|||++....+.|
T Consensus 97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~i 176 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI 176 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCC
T ss_pred CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceE
Confidence 99999999999999999999863 2368999999999999999999999889999
Q ss_pred eecCCC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEee
Q 002808 193 REDSQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLID 271 (878)
Q Consensus 193 red~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVD 271 (878)
++|+.| +||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+..... ......|+|+|||
T Consensus 177 red~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~---~~~~~~skL~lVD 253 (388)
T 3bfn_A 177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLA---PFRQREGKLYLID 253 (388)
T ss_dssp EECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESST---TCCEEEEEEEEEE
T ss_pred EEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCC---CCceeEEEEEEEE
Confidence 999965 999999999999999999999999999999999999999999999999998764322 2235789999999
Q ss_pred cCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChH
Q 002808 272 LAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSE 350 (878)
Q Consensus 272 LAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~e 350 (878)
|||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 254 LAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ 332 (388)
T 3bfn_A 254 LAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYL 332 (388)
T ss_dssp CCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHH
T ss_pred CCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHH
Confidence 999999 6789999999999999999999999999999875 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccch
Q 002808 351 ETHNTLKFAHRAKHIEILAAQNKLEDG 377 (878)
Q Consensus 351 ETLsTLrFAsRak~Ikn~~~~N~~~~~ 377 (878)
||++||+||+|||.|+|.|.+|+..+.
T Consensus 333 ETlsTLrfA~rak~I~n~p~~n~~~~~ 359 (388)
T 3bfn_A 333 DTVSALNFAARSKEVINRPFTNESLQP 359 (388)
T ss_dssp HHHHHHHHHCSEEEEC-----------
T ss_pred HHHHHHHHHHHHhhCcCcCcccCCCCH
Confidence 999999999999999999999975443
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.2e-82 Score=700.19 Aligned_cols=309 Identities=38% Similarity=0.586 Sum_probs=255.7
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEE--EecCCCEEEeCC-----CCCceeEEeccccCCCCcchhHHHHHHHHHHHH
Q 002808 63 PSSKENVTVTVRFRPLSPREIRQGEEIA--WYADGETILRNE-----DNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (878)
Q Consensus 63 ~~~~~~IkV~VRVRPl~~~E~~~g~~~~--~~~d~~~i~~~~-----~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (878)
....++|+|+|||||++..|...+...+ +.++...+.+.. ....+.|.||+||+++++|++||+.++.|+|++
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDE 83 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHH
Confidence 3447899999999999999987766532 333334443321 123468999999999999999999999999999
Q ss_pred hhcCCCcceeeecccCCCCcccccCCC--------------------------------ceeEEEEEeeeeecceeeecC
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMHTPN--------------------------------REFLLRVSYLEIYNEVVNDLL 183 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~~--------------------------------~ef~V~vS~lEIYnE~I~DLL 183 (878)
+|+|||+||||||||||||||||+|+. .+|.|+|||+|||||+|+|||
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETT
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehh
Confidence 999999999999999999999998742 358999999999999999999
Q ss_pred CCCC---CCcceeecC---CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCC
Q 002808 184 NPAG---QNLRIREDS---QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENS 257 (878)
Q Consensus 184 ~p~~---~~L~Ired~---~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~ 257 (878)
++.. ..+.|++++ .|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+..... .
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~-~ 242 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI-D 242 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECT-T
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccC-C
Confidence 8764 468999997 36999999999999999999999999999999999999999999999999998653221 1
Q ss_pred CCceeeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccc
Q 002808 258 AGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRV 336 (878)
Q Consensus 258 ~~~~~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT 336 (878)
+......|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|
T Consensus 243 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt 321 (359)
T 1x88_A 243 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER-TPHVPYRESKLTRILQDSLGGRTRT 321 (359)
T ss_dssp SCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGSSSSSEE
T ss_pred CCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC-CCCCccccchHHHHHHHHhCCCCeE
Confidence 23346789999999999999 678999999999999999999999999999985 4899999999999999999999999
Q ss_pred eeEEeeCCCCCChHHHHHHHHHHHHhccccccccccc
Q 002808 337 SLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (878)
Q Consensus 337 ~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~ 373 (878)
+|||||||+..+++||++||+||+|||+|+|.|.+|+
T Consensus 322 ~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 322 SIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999999999999999999999999995
No 10
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.4e-81 Score=697.48 Aligned_cols=306 Identities=38% Similarity=0.539 Sum_probs=274.9
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCCC-EEEe-CCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCC
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADGE-TILR-NEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN 141 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~-~i~~-~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN 141 (878)
+.+++|+|+|||||++..|...+..+.+...+. ++.. ......+.|.||+||+++++|++||+. +.|+|+++|+|||
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCc
Confidence 347899999999999999988777655544444 3332 223345789999999999999999998 6999999999999
Q ss_pred cceeeecccCCCCcccccCCC-----------------------ceeEEEEEeeeeecceeeecCCCCC---CCcceeec
Q 002808 142 GTIFAYGVTSSGKTHTMHTPN-----------------------REFLLRVSYLEIYNEVVNDLLNPAG---QNLRIRED 195 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~g~~-----------------------~ef~V~vS~lEIYnE~I~DLL~p~~---~~L~Ired 195 (878)
+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||+|.. ..+.|++|
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~ 160 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 160 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEEC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEEC
Confidence 999999999999999998642 3699999999999999999998753 57999999
Q ss_pred CCC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCC
Q 002808 196 SQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAG 274 (878)
Q Consensus 196 ~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAG 274 (878)
+.| +||.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+||||||
T Consensus 161 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLAG 236 (369)
T 3cob_A 161 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ----TQAIARGKLSFVDLAG 236 (369)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT----TCCEEEEEEEEEECCC
T ss_pred CCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC----CCcEEEEEEEEEeCCC
Confidence 865 99999999999999999999999999999999999999999999999999876432 2356789999999999
Q ss_pred CCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHH
Q 002808 275 SES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETH 353 (878)
Q Consensus 275 SEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETL 353 (878)
||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||+
T Consensus 237 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp SSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 999 6788999999999999999999999999999864 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccccccc
Q 002808 354 NTLKFAHRAKHIEILAAQNKLE 375 (878)
Q Consensus 354 sTLrFAsRak~Ikn~~~~N~~~ 375 (878)
+||+||+|||+|+|.|.+|...
T Consensus 316 ~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 316 NSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHHTCBCCCCCCEEC
T ss_pred HHHHHHHHHhhcccCCcccCCH
Confidence 9999999999999999999644
No 11
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.3e-81 Score=687.91 Aligned_cols=292 Identities=45% Similarity=0.702 Sum_probs=269.0
Q ss_pred CCCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcc
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT 143 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t 143 (878)
.+++|+|+|||||+++.|...+.. ++...+..++.+. .+.|.||+||+++++|++||+.+++|+|+++|+|||+|
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~----~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~t 80 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA----SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGT 80 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC----CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEE
Confidence 468999999999999999887765 3344555666654 47899999999999999999999999999999999999
Q ss_pred eeeecccCCCCcccccCC--------------------------CceeEEEEEeeeeecceeeecCCCCCCCcceeecCC
Q 002808 144 IFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ 197 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~g~--------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~Ired~~ 197 (878)
|||||||||||||||+|+ +.+|.|+|||+|||||+|+|||++...++.|++++.
T Consensus 81 ifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~~ 160 (325)
T 1bg2_A 81 IFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKN 160 (325)
T ss_dssp EEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTT
T ss_pred EEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECCC
Confidence 999999999999999863 236899999999999999999999889999999986
Q ss_pred C-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCC
Q 002808 198 G-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSE 276 (878)
Q Consensus 198 G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSE 276 (878)
| +||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+||||||||
T Consensus 161 ~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skl~lVDLAGSE 236 (325)
T 1bg2_A 161 RVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TEQKLSGKLYLVDLAGSE 236 (325)
T ss_dssp SCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT----TCCEEEEEEEEEECCCSC
T ss_pred CCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC----CCcEEEEEEEEEECCCCC
Confidence 4 89999999999999999999999999999999999999999999999999875432 234678999999999999
Q ss_pred C-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHH
Q 002808 277 S-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNT 355 (878)
Q Consensus 277 r-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsT 355 (878)
| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+++||++|
T Consensus 237 r~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~T 315 (325)
T 1bg2_A 237 KVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKST 315 (325)
T ss_dssp CCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHH
Confidence 9 678999999999999999999999999999987 47999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 002808 356 LKFAHRAKHI 365 (878)
Q Consensus 356 LrFAsRak~I 365 (878)
|+||+|||+|
T Consensus 316 L~fa~rak~I 325 (325)
T 1bg2_A 316 LLFGQRAKTI 325 (325)
T ss_dssp HHHHHTSCCC
T ss_pred HHHHHHhccC
Confidence 9999999987
No 12
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.3e-81 Score=690.46 Aligned_cols=301 Identities=38% Similarity=0.599 Sum_probs=239.2
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCC---------------------CCceeEEeccccCCCCc
Q 002808 63 PSSKENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNED---------------------NPSIAYAYDRVFGPTTT 120 (878)
Q Consensus 63 ~~~~~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~---------------------~~~~~F~FD~VF~~~at 120 (878)
.+..++|+|+|||||++.+|...|.. ++...++.+++.++. .....|.||+||+++++
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~ 85 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETST 85 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCC
T ss_pred hhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCC
Confidence 34578999999999999999988765 444455555544332 12357999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCcceeeecccCCCCcccccCC-----------------------CceeEEEEEeeeeecc
Q 002808 121 TRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNE 177 (878)
Q Consensus 121 QeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~-----------------------~~ef~V~vS~lEIYnE 177 (878)
|++||+.++.|+|+++|+|||+||||||||||||||||+|+ ...|.|+|||+|||||
T Consensus 86 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE 165 (355)
T 3lre_A 86 QSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNE 165 (355)
T ss_dssp HHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999864 2358999999999999
Q ss_pred eeeecCCCCCCCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCC
Q 002808 178 VVNDLLNPAGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGEN 256 (878)
Q Consensus 178 ~I~DLL~p~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~ 256 (878)
+|+|||++. .++.|++|+. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+......
T Consensus 166 ~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 166 QIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp EEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred EEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 999999875 4799999985 69999999999999999999999999999999999999999999999999998653322
Q ss_pred CCCceeeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCC--CCCccCCCCchhhhhhccCCCC
Q 002808 257 SAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR--ATHIPYRDSKLTRLLQSSLSGH 333 (878)
Q Consensus 257 ~~~~~~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k--~~hIPYRdSKLTrLLqdsLGGn 333 (878)
.......|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||
T Consensus 245 -~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGn 323 (355)
T 3lre_A 245 -INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGN 323 (355)
T ss_dssp -TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTT
T ss_pred -CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCC
Confidence 23446789999999999999 6789999999999999999999999999999854 3699999999999999999999
Q ss_pred ccceeEEeeCCCCCChHHHHHHHHHHHHhccc
Q 002808 334 GRVSLICTVTPSSSSSEETHNTLKFAHRAKHI 365 (878)
Q Consensus 334 skT~mIa~ISPs~~~~eETLsTLrFAsRak~I 365 (878)
|+|+|||||||+..+++||++||+||+|||+|
T Consensus 324 skt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 324 CQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999987
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-81 Score=695.64 Aligned_cols=308 Identities=40% Similarity=0.645 Sum_probs=257.7
Q ss_pred CCCCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCC---CCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcC
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNE---DNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG 139 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~---~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~G 139 (878)
...++|+|+|||||++..|...+.. ++...++..++... ....+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G 99 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNG 99 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCC
Confidence 4478999999999999999765543 33344555555432 2345789999999999999999999999999999999
Q ss_pred CCcceeeecccCCCCcccccCCC--------------------------------ceeEEEEEeeeeecceeeecCCCCC
Q 002808 140 INGTIFAYGVTSSGKTHTMHTPN--------------------------------REFLLRVSYLEIYNEVVNDLLNPAG 187 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~g~~--------------------------------~ef~V~vS~lEIYnE~I~DLL~p~~ 187 (878)
||+||||||||||||||||+|+. .+|.|+|||+|||||+|+|||++..
T Consensus 100 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 179 (373)
T 2wbe_C 100 YNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDD 179 (373)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCTTS
T ss_pred ceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCCCC
Confidence 99999999999999999999753 2589999999999999999998764
Q ss_pred -CCcceeecC--C-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceee
Q 002808 188 -QNLRIREDS--Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVN 263 (878)
Q Consensus 188 -~~L~Ired~--~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~ 263 (878)
..+.+++++ . |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+...+. .......
T Consensus 180 ~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~ 258 (373)
T 2wbe_C 180 TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI-EGEDMLK 258 (373)
T ss_dssp CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT-TTCCEEE
T ss_pred CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC-CCCccee
Confidence 468888874 3 4999999999999999999999999999999999999999999999999998764322 2234467
Q ss_pred eeeeeEeecCCCCC-cccccc-chhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEe
Q 002808 264 LSQLHLIDLAGSES-SKAETT-GVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICT 341 (878)
Q Consensus 264 ~SkL~LVDLAGSEr-~kt~~~-G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ 341 (878)
.|+|+||||||||| .++++. |.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+||||
T Consensus 259 ~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~ 337 (373)
T 2wbe_C 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKTSIIAT 337 (373)
T ss_dssp EEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC-SSCCCGGGCHHHHHTHHHHHSSSEEEEEEE
T ss_pred EEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC-CCcCccccchHHHHHHHHhCCCceEEEEEE
Confidence 89999999999999 567776 999999999999999999999999985 479999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHhccccccccccc
Q 002808 342 VTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (878)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~ 373 (878)
|||+..+++||++||+||+|||+|+|.|.+|+
T Consensus 338 isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~ 369 (373)
T 2wbe_C 338 ISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369 (373)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHTCEECCCCCE
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccccceecc
Confidence 99999999999999999999999999999996
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=9e-80 Score=678.38 Aligned_cols=296 Identities=42% Similarity=0.625 Sum_probs=242.8
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEE--EecCCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCc
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEEIA--WYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~~~--~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (878)
..++|+|+|||||+++.|...+...+ +.++...+... ..+.|.||+||+++++|++||+.++.|+|+++|+|||+
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~---~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ 85 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG---RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNA 85 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec---ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCe
Confidence 36889999999999999987765432 33333444443 35789999999999999999999999999999999999
Q ss_pred ceeeecccCCCCcccccCC----------------------------CceeEEEEEeeeeecceeeecCCCC--CCCcce
Q 002808 143 TIFAYGVTSSGKTHTMHTP----------------------------NREFLLRVSYLEIYNEVVNDLLNPA--GQNLRI 192 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~----------------------------~~ef~V~vS~lEIYnE~I~DLL~p~--~~~L~I 192 (878)
||||||||||||||||+|. ..+|.|+|||+|||||+|+|||++. ...+.|
T Consensus 86 tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 165 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQL 165 (344)
T ss_dssp EEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEE
T ss_pred eEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcccccccee
Confidence 9999999999999999864 2369999999999999999999864 357999
Q ss_pred eecCCC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCC----CCCceeeeeee
Q 002808 193 REDSQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGEN----SAGEAVNLSQL 267 (878)
Q Consensus 193 red~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~----~~~~~~~~SkL 267 (878)
++|+.| +||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++...... ........|+|
T Consensus 166 ~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl 245 (344)
T 4a14_A 166 REDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKF 245 (344)
T ss_dssp EECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEE
T ss_pred eeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeee
Confidence 999965 9999999999999999999999999999999999999999999999999997643221 12345678999
Q ss_pred eEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcC--CCCCccCCCCchhhhhhccCCCCccceeEEeeCC
Q 002808 268 HLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG--RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTP 344 (878)
Q Consensus 268 ~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~--k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISP 344 (878)
+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+|||||+|+|||||||
T Consensus 246 ~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP 325 (344)
T 4a14_A 246 HFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSP 325 (344)
T ss_dssp EEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECC
T ss_pred eEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCC
Confidence 9999999999 678999999999999999999999999999975 3469999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 002808 345 SSSSSEETHNTLKFAHRAK 363 (878)
Q Consensus 345 s~~~~eETLsTLrFAsRak 363 (878)
+..+++||++||+||+|||
T Consensus 326 ~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 326 SSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp BGGGHHHHHHHHHHHHHTC
T ss_pred CccchhHHhhhhhhhhhcC
Confidence 9999999999999999997
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=6e-80 Score=681.80 Aligned_cols=299 Identities=41% Similarity=0.633 Sum_probs=242.6
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC----------CCceeEEeccccC--------CCCcchhHHHHH
Q 002808 67 ENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED----------NPSIAYAYDRVFG--------PTTTTRHVYDIA 128 (878)
Q Consensus 67 ~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~----------~~~~~F~FD~VF~--------~~atQeeVY~~~ 128 (878)
.+|+|+|||||++.+|...+...++..++..+++.++ ...+.|.||+||+ +.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 3699999999999999987776655555555554432 2357899999994 567899999999
Q ss_pred HHHHHHHhhcCCCcceeeecccCCCCcccccCC------------------------CceeEEEEEeeeeecceeeecCC
Q 002808 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLN 184 (878)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------~~ef~V~vS~lEIYnE~I~DLL~ 184 (878)
+.|+|+++|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 999999999999999999999999999999864 23599999999999999999999
Q ss_pred CCC--CCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCce
Q 002808 185 PAG--QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (878)
Q Consensus 185 p~~--~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~ 261 (878)
|.. ..+.|++++. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+...........
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 240 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC
Confidence 763 5799999985 6999999999999999999999999999999999999999999999999998764443444455
Q ss_pred eeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhc-----CCCCCccCCCCchhhhhhccCCCCcc
Q 002808 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD-----GRATHIPYRDSKLTRLLQSSLSGHGR 335 (878)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~-----~k~~hIPYRdSKLTrLLqdsLGGnsk 335 (878)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++ ++..|||||||||||||||+|||||+
T Consensus 241 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 320 (354)
T 3gbj_A 241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 320 (354)
T ss_dssp EEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCE
T ss_pred eeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCe
Confidence 6789999999999999 67889999999999999999999999999986 34579999999999999999999999
Q ss_pred ceeEEeeCCCCCChHHHHHHHHHHHHhccc
Q 002808 336 VSLICTVTPSSSSSEETHNTLKFAHRAKHI 365 (878)
Q Consensus 336 T~mIa~ISPs~~~~eETLsTLrFAsRak~I 365 (878)
|+|||||||+..+++|||+||+||.||++-
T Consensus 321 t~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 321 TAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred EEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999964
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-80 Score=683.18 Aligned_cols=296 Identities=37% Similarity=0.529 Sum_probs=240.2
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCC-----------CCCceeEEeccccCCCCcchhHHHHHHHHH
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNE-----------DNPSIAYAYDRVFGPTTTTRHVYDIAAQHV 132 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~-----------~~~~~~F~FD~VF~~~atQeeVY~~~~~pl 132 (878)
+.+++|+|+|||||++..|.. .+.+..++..+.+.. ....+.|.||+||+ +++|++||+.+++|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 447899999999999876632 233444444444322 22346799999997 589999999999999
Q ss_pred HHHhhcCCCcceeeecccCCCCcccccCCC-------------------------ceeEEEEEeeeeecceeeecCCCC-
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMHTPN-------------------------REFLLRVSYLEIYNEVVNDLLNPA- 186 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~g~~-------------------------~ef~V~vS~lEIYnE~I~DLL~p~- 186 (878)
|+++|+|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 176 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 176 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccc
Confidence 999999999999999999999999999742 358999999999999999999853
Q ss_pred -----CCCcceeecCCCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCce
Q 002808 187 -----GQNLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (878)
Q Consensus 187 -----~~~L~Ired~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~ 261 (878)
...+.+++++.|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... .....
T Consensus 177 ~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~--~~~~~ 254 (359)
T 3nwn_A 177 YVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT--LSEEK 254 (359)
T ss_dssp TSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------C
T ss_pred ccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc--ccCcc
Confidence 34678899999999999999999999999999999999999999999999999999999999876432 22344
Q ss_pred eeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEE
Q 002808 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLIC 340 (878)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa 340 (878)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||
T Consensus 255 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~ 334 (359)
T 3nwn_A 255 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 334 (359)
T ss_dssp CEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEE
T ss_pred cccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEE
Confidence 6789999999999999 678999999999999999999999999999998878999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHhccc
Q 002808 341 TVTPSSSSSEETHNTLKFAHRAKHI 365 (878)
Q Consensus 341 ~ISPs~~~~eETLsTLrFAsRak~I 365 (878)
||||+..+++||++||+||+|||+|
T Consensus 335 ~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 335 NIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EeCCchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987
No 17
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.7e-79 Score=677.29 Aligned_cols=300 Identities=34% Similarity=0.507 Sum_probs=241.6
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEec----CCC-EEEeCCC---CCceeEEeccccCCCCcchhHHHHHHHHHHHHh
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEEIAWYA----DGE-TILRNED---NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~~~~~~----d~~-~i~~~~~---~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (878)
.+|+|+|+|||||+++.|...+..+.+.. .+. .+.+... ...+.|.||+||+++++|++||+. +.|+|+++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~ 81 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSS 81 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHGG
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHH-HHHHHHHH
Confidence 47899999999999999987766655431 122 3333221 124689999999999999999997 56999999
Q ss_pred hcCCCcceeeecccCCCCcccccCC----------------------CceeEEEEEeeeeecceeeecCCCCC-------
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAG------- 187 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~------- 187 (878)
|+|||+||||||||||||||||+|+ +..|.|+|||+|||||.|+|||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~ 161 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDE 161 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC----------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccccc
Confidence 9999999999999999999999754 34699999999999999999998643
Q ss_pred ----CCcceeecC--CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCce
Q 002808 188 ----QNLRIREDS--QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (878)
Q Consensus 188 ----~~L~Ired~--~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~ 261 (878)
..+.|++++ .|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ...
T Consensus 162 ~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~ 237 (349)
T 3t0q_A 162 ILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH----TGE 237 (349)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETT----TCC
T ss_pred ccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecC----CCC
Confidence 467787765 4699999999999999999999999999999999999999999999999999876432 234
Q ss_pred eeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCC--CCccCCCCchhhhhhccCCCCcccee
Q 002808 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA--THIPYRDSKLTRLLQSSLSGHGRVSL 338 (878)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~--~hIPYRdSKLTrLLqdsLGGnskT~m 338 (878)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|+|
T Consensus 238 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 317 (349)
T 3t0q_A 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLM 317 (349)
T ss_dssp EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEE
T ss_pred eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 6789999999999999 67899999999999999999999999999988543 59999999999999999999999999
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHhccccccc
Q 002808 339 ICTVTPSSSSSEETHNTLKFAHRAKHIEILA 369 (878)
Q Consensus 339 Ia~ISPs~~~~eETLsTLrFAsRak~Ikn~~ 369 (878)
||||||+..+++||++||+||+|++.|+..+
T Consensus 318 i~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 318 FVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998654
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-79 Score=669.74 Aligned_cols=297 Identities=37% Similarity=0.575 Sum_probs=251.0
Q ss_pred CCCCeEEEEecCCCChhhhccCC---eEEEecC-CCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcCC
Q 002808 65 SKENVTVTVRFRPLSPREIRQGE---EIAWYAD-GETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~---~~~~~~d-~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (878)
.+++|+|+|||||++..|...+. .+.+.++ +..+........+.|.||+||+++++|++||+.+ .|+|+++|+||
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~ 80 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGF 80 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCC
Confidence 47899999999999999865432 2334333 3444444444567899999999999999999985 89999999999
Q ss_pred CcceeeecccCCCCcccccCC-----------------------CceeEEEEEeeeeecceeeecCCCCC-CCccee--e
Q 002808 141 NGTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNEVVNDLLNPAG-QNLRIR--E 194 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~-----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~-~~L~Ir--e 194 (878)
|+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++.. ..+.|+ +
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~ 160 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECT
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEee
Confidence 999999999999999999864 23699999999999999999998754 345555 5
Q ss_pred cCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecC
Q 002808 195 DSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLA 273 (878)
Q Consensus 195 d~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLA 273 (878)
|+. |++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+... .......|+|+|||||
T Consensus 161 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~----~~~~~~~skL~lVDLA 236 (330)
T 2h58_A 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC----STGLRTTGKLNLVDLA 236 (330)
T ss_dssp TSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEET----TTTEEEEEEEEEEECC
T ss_pred cCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEec----CCCcEEEEEEEEEeCC
Confidence 654 59999999999999999999999999999999999999999999999999987542 2345678999999999
Q ss_pred CCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002808 274 GSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (878)
Q Consensus 274 GSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eET 352 (878)
|||| .++++.|.|++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||||+..+++||
T Consensus 237 GSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ET 315 (330)
T 2h58_A 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR-QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSET 315 (330)
T ss_dssp CCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHH
T ss_pred CCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC-CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHH
Confidence 9999 678899999999999999999999999999985 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccc
Q 002808 353 HNTLKFAHRAKHIEI 367 (878)
Q Consensus 353 LsTLrFAsRak~Ikn 367 (878)
++||+||+|||+|+.
T Consensus 316 l~TL~fA~rak~i~~ 330 (330)
T 2h58_A 316 LYSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHhhCcC
Confidence 999999999999963
No 19
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4.1e-79 Score=673.59 Aligned_cols=300 Identities=33% Similarity=0.491 Sum_probs=244.8
Q ss_pred CCCeEEEEecCCCCh-hhhccCCeEEEec----CC-CEEEeC---CCCCceeEEeccccCCCCcchhHHHHHHHHHHHHh
Q 002808 66 KENVTVTVRFRPLSP-REIRQGEEIAWYA----DG-ETILRN---EDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~-~E~~~g~~~~~~~----d~-~~i~~~---~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (878)
+++|+|+|||||+++ .|......+.+.. ++ ..+.+. .....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 589999999999988 4433222233221 12 223332 123457899999999999999999984 6999999
Q ss_pred hcCCCcceeeecccCCCCcccccCC----------------------CceeEEEEEeeeeecceeeecCCCCCC------
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQ------ 188 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~------ 188 (878)
|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~ 160 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS 160 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC----------
T ss_pred cCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccccc
Confidence 9999999999999999999999864 246999999999999999999987643
Q ss_pred ---CcceeecC--CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceee
Q 002808 189 ---NLRIREDS--QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVN 263 (878)
Q Consensus 189 ---~L~Ired~--~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~ 263 (878)
.+.|++++ .|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+.... .+...
T Consensus 161 ~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~ 236 (347)
T 1f9v_A 161 IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK----TGAHS 236 (347)
T ss_dssp ---CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC------CCEE
T ss_pred cCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC----CCcee
Confidence 47788765 4699999999999999999999999999999999999999999999999999875422 23467
Q ss_pred eeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCC--CCCccCCCCchhhhhhccCCCCccceeEE
Q 002808 264 LSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR--ATHIPYRDSKLTRLLQSSLSGHGRVSLIC 340 (878)
Q Consensus 264 ~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k--~~hIPYRdSKLTrLLqdsLGGnskT~mIa 340 (878)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 89999999999999 6789999999999999999999999999999865 47999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHhcccccccc
Q 002808 341 TVTPSSSSSEETHNTLKFAHRAKHIEILAA 370 (878)
Q Consensus 341 ~ISPs~~~~eETLsTLrFAsRak~Ikn~~~ 370 (878)
||||+..+++||++||+||+|+++|++.+.
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999998764
No 20
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=4.7e-79 Score=679.88 Aligned_cols=292 Identities=35% Similarity=0.518 Sum_probs=239.1
Q ss_pred CCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCC---------CceeEEeccccCCCCcchhHHHHHHHHHHHH
Q 002808 66 KENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (878)
.++|+|+|||||++..|...+.. ++..++...+++..+. ..+.|.||+||+++++|++||+.++.|+|++
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~ 129 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 129 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHH
Confidence 78999999999999999887765 3444444554443221 2358999999999999999999999999999
Q ss_pred hhcCCCcceeeecccCCCCcccccCC------------------------------CceeEEEEEeeeeecceeeecCCC
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMHTP------------------------------NREFLLRVSYLEIYNEVVNDLLNP 185 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------------~~ef~V~vS~lEIYnE~I~DLL~p 185 (878)
+|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 209 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCC
Confidence 99999999999999999999999873 125899999999999999999997
Q ss_pred CCCCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeee
Q 002808 186 AGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (878)
Q Consensus 186 ~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~ 264 (878)
. ..+.|++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|.+. ....
T Consensus 210 ~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---------~~~~ 279 (387)
T 2heh_A 210 K-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK---------GRMH 279 (387)
T ss_dssp T-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS---------SSEE
T ss_pred C-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC---------Ceee
Confidence 5 4799999986 599999999999999999999999999999999999999999999999999854 1467
Q ss_pred eeeeEeecCCCCC-cccc-ccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhcc-CCCCccceeEEe
Q 002808 265 SQLHLIDLAGSES-SKAE-TTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSS-LSGHGRVSLICT 341 (878)
Q Consensus 265 SkL~LVDLAGSEr-~kt~-~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqds-LGGnskT~mIa~ 341 (878)
|+|+||||||||| .+++ ..|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+ |||||+|+||||
T Consensus 280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~mIa~ 358 (387)
T 2heh_A 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIAT 358 (387)
T ss_dssp EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEEEEEE
T ss_pred eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEEEEEE
Confidence 9999999999999 4554 56788999999999999999999999985 589999999999999999 699999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHhcccccc
Q 002808 342 VTPSSSSSEETHNTLKFAHRAKHIEIL 368 (878)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRak~Ikn~ 368 (878)
|||+..+++||++||+||+|||+|++.
T Consensus 359 isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 359 ISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred eCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999864
No 21
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.7e-79 Score=676.60 Aligned_cols=302 Identities=34% Similarity=0.477 Sum_probs=230.2
Q ss_pred CCCCCCCCCCCeEEEEecCCCChhhhccCCe-EEEe-------cCCCEEEeCC-------------CCCceeEEeccccC
Q 002808 58 YYTENPSSKENVTVTVRFRPLSPREIRQGEE-IAWY-------ADGETILRNE-------------DNPSIAYAYDRVFG 116 (878)
Q Consensus 58 ~~~~~~~~~~~IkV~VRVRPl~~~E~~~g~~-~~~~-------~d~~~i~~~~-------------~~~~~~F~FD~VF~ 116 (878)
..+.-.+.+++|+|+|||||+++.|...+.. +.+. .++..+.+.. ....+.|.||+||+
T Consensus 13 ~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~ 92 (376)
T 2rep_A 13 GLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFP 92 (376)
T ss_dssp ----------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEEC
T ss_pred ccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcC
Confidence 3455567789999999999999999876532 2111 2333443322 11245799999999
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCcccccCC----------------------------CceeEEE
Q 002808 117 PTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTP----------------------------NREFLLR 168 (878)
Q Consensus 117 ~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~----------------------------~~ef~V~ 168 (878)
++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+ +..|.|+
T Consensus 93 ~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~ 171 (376)
T 2rep_A 93 PGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFV 171 (376)
T ss_dssp TTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred CcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 999999999985 58999999999999999999999999999874 2369999
Q ss_pred EEeeeeecceeeecCCCC-----CCCcceeecC---CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCc
Q 002808 169 VSYLEIYNEVVNDLLNPA-----GQNLRIREDS---QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRS 240 (878)
Q Consensus 169 vS~lEIYnE~I~DLL~p~-----~~~L~Ired~---~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRS 240 (878)
|||+|||||+|+|||++. ...+.|+++. .|++|.|++++.|.+++|++.+|..|.++|++++|.||..||||
T Consensus 172 vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRS 251 (376)
T 2rep_A 172 ASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRS 251 (376)
T ss_dssp EEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGS
T ss_pred EEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCc
Confidence 999999999999999875 2468899883 46999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCC-ccccccc----hhhhhhhhccccHHHHHHHHHHhhcCCCCCc
Q 002808 241 HTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTG----VRRKEGSYINKSLLTLGTVISKLTDGRATHI 315 (878)
Q Consensus 241 H~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~~G----~rlkE~~~INkSL~aLg~VI~aLs~~k~~hI 315 (878)
|+||+|+|.+.... ......|+|+||||||||| .++++.| .|++|+.+||+||++||+||.+|+++ ..||
T Consensus 252 H~Ifti~v~~~~~~----~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~-~~hV 326 (376)
T 2rep_A 252 HSVFQLQISGEHSS----RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK-ESHV 326 (376)
T ss_dssp EEEEEEEEEEEESS----SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT-CSCC
T ss_pred eEEEEEEEEEEecC----CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC-CCcc
Confidence 99999999876432 2345679999999999999 6688888 99999999999999999999999985 4799
Q ss_pred cCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHhccc
Q 002808 316 PYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHI 365 (878)
Q Consensus 316 PYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsRak~I 365 (878)
|||||||||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 327 PYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 327 PYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp CGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999864
No 22
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=6.2e-79 Score=674.18 Aligned_cols=297 Identities=37% Similarity=0.530 Sum_probs=241.4
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC-----------CCceeEEeccccCCCCcchhHHHHHHHH
Q 002808 63 PSSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED-----------NPSIAYAYDRVFGPTTTTRHVYDIAAQH 131 (878)
Q Consensus 63 ~~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~-----------~~~~~F~FD~VF~~~atQeeVY~~~~~p 131 (878)
.+.+|+|+|+|||||+...+. ..+.+..++..+.+..+ ...+.|.||+||+ +++|++||+.++.|
T Consensus 19 ~~~~g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~ 94 (358)
T 2nr8_A 19 SGTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 94 (358)
T ss_dssp ----CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHH
Confidence 355899999999999876432 23445556665544322 2346799999995 88999999999999
Q ss_pred HHHHhhcCCCcceeeecccCCCCcccccCCC-------------------------ceeEEEEEeeeeecceeeecCCCC
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMHTPN-------------------------REFLLRVSYLEIYNEVVNDLLNPA 186 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~-------------------------~ef~V~vS~lEIYnE~I~DLL~p~ 186 (878)
+|+++|+|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 174 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTL 174 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSS
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCCc
Confidence 9999999999999999999999999998642 358999999999999999999863
Q ss_pred ------CCCcceeecCCCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCc
Q 002808 187 ------GQNLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGE 260 (878)
Q Consensus 187 ------~~~L~Ired~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~ 260 (878)
..++.|++++.|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ...
T Consensus 175 ~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~ 252 (358)
T 2nr8_A 175 PYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL--SEE 252 (358)
T ss_dssp TTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------
T ss_pred cccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC--CCC
Confidence 357999999999999999999999999999999999999999999999999999999999998764322 233
Q ss_pred eeeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeE
Q 002808 261 AVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLI 339 (878)
Q Consensus 261 ~~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mI 339 (878)
....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+||
T Consensus 253 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI 332 (358)
T 2nr8_A 253 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLV 332 (358)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEE
Confidence 45689999999999999 67899999999999999999999999999998877899999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHhccc
Q 002808 340 CTVTPSSSSSEETHNTLKFAHRAKHI 365 (878)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRak~I 365 (878)
|||||+..+++||++||+||+|||.|
T Consensus 333 a~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 333 TNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=8.4e-79 Score=681.80 Aligned_cols=294 Identities=35% Similarity=0.513 Sum_probs=241.3
Q ss_pred CCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCC---------CceeEEeccccCCCCcchhHHHHHHHHHHHH
Q 002808 66 KENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (878)
Q Consensus 66 ~~~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (878)
.++|+|+|||||++..|...+.. ++..+++.++++..+. ....|.||+||+++++|++||+.++.|+|++
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~ 149 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 149 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHH
Confidence 68999999999999999887765 4444555555443221 1357999999999999999999999999999
Q ss_pred hhcCCCcceeeecccCCCCcccccCC------------------------------CceeEEEEEeeeeecceeeecCCC
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMHTP------------------------------NREFLLRVSYLEIYNEVVNDLLNP 185 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------------~~ef~V~vS~lEIYnE~I~DLL~p 185 (878)
+|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 99999999999999999999999873 125899999999999999999997
Q ss_pred CCCCcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeee
Q 002808 186 AGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (878)
Q Consensus 186 ~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~ 264 (878)
. ..+.|++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|.+. ....
T Consensus 230 ~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---------~~~~ 299 (410)
T 1v8k_A 230 K-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK---------GRLH 299 (410)
T ss_dssp T-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS---------SSEE
T ss_pred C-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC---------Ccce
Confidence 5 4799999985 599999999999999999999999999999999999999999999999999854 1367
Q ss_pred eeeeEeecCCCCC-cccc-ccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhcc-CCCCccceeEEe
Q 002808 265 SQLHLIDLAGSES-SKAE-TTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSS-LSGHGRVSLICT 341 (878)
Q Consensus 265 SkL~LVDLAGSEr-~kt~-~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqds-LGGnskT~mIa~ 341 (878)
|+|+||||||||| .+++ ..|.+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+ |||||+|+||||
T Consensus 300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hIPYRdSKLTrLLqdsllGgnskT~mIa~ 378 (410)
T 1v8k_A 300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378 (410)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEE
T ss_pred eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-CCCCCcccchhHHHHhhcccCCCceEEEEEE
Confidence 9999999999999 4554 56788999999999999999999999975 479999999999999999 699999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHhcccccccc
Q 002808 342 VTPSSSSSEETHNTLKFAHRAKHIEILAA 370 (878)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRak~Ikn~~~ 370 (878)
|||+..+++||++||+||+|||.|..+|.
T Consensus 379 iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 379 ISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred eCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999987664
No 24
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.4e-78 Score=671.90 Aligned_cols=297 Identities=30% Similarity=0.433 Sum_probs=249.4
Q ss_pred CeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCC---------CceeEEeccccCCCCcchhHHHHHHHHHHHHhh
Q 002808 68 NVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAM 137 (878)
Q Consensus 68 ~IkV~VRVRPl~~~E~~~g~~-~~~~~d~~~i~~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl 137 (878)
+|+|+|||||++..|...+.. ++...++.++++..+. ....|.||+||+++++|++||+.++.|+|.++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 599999999999999887754 4444555555554321 235899999999999999999999999999999
Q ss_pred c-CCCcceeeecccCCCCcccccCCC----------------------------ceeEEEEEeeeeecceeeecCCCCCC
Q 002808 138 D-GINGTIFAYGVTSSGKTHTMHTPN----------------------------REFLLRVSYLEIYNEVVNDLLNPAGQ 188 (878)
Q Consensus 138 ~-GyN~tIfAYGqTGSGKTyTM~g~~----------------------------~ef~V~vS~lEIYnE~I~DLL~p~~~ 188 (878)
+ |||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999998742 3589999999999999999998764
Q ss_pred CcceeecCC-CeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeee
Q 002808 189 NLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQL 267 (878)
Q Consensus 189 ~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL 267 (878)
.+.+++++. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.. .....|+|
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-------~~~~~skL 232 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-------KNTSLGKI 232 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-------TTEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-------CCcceeEE
Confidence 577788774 6999999999999999999999999999999999999999999999999998642 22567999
Q ss_pred eEeecCCCCC-ccccccc-hhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCC
Q 002808 268 HLIDLAGSES-SKAETTG-VRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPS 345 (878)
Q Consensus 268 ~LVDLAGSEr-~kt~~~G-~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs 345 (878)
+||||||||| .++++.| .+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||||+
T Consensus 233 ~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 311 (360)
T 1ry6_A 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311 (360)
T ss_dssp EEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCB
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 9999999999 5676665 57899999999999999999999875 4799999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccccccccccc
Q 002808 346 SSSSEETHNTLKFAHRAKHIEILAAQNK 373 (878)
Q Consensus 346 ~~~~eETLsTLrFAsRak~Ikn~~~~N~ 373 (878)
..+++||++||+||+|||+|+|.+..|+
T Consensus 312 ~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 312 ISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp GGGHHHHHHHHHHHHHHCC---------
T ss_pred cccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 9999999999999999999999766664
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=2e-77 Score=672.54 Aligned_cols=302 Identities=34% Similarity=0.521 Sum_probs=248.8
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCC-------CceeEEeccccCCCCcchhHHHHHHHHHHHHh
Q 002808 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDN-------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (878)
Q Consensus 64 ~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~-------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (878)
+.+|+|+|+|||||+.+.|...+..++...++.++.+.... ..+.|.||+||+++++|++||+. +.|+|+++
T Consensus 56 ~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~ 134 (412)
T 3u06_A 56 DLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSA 134 (412)
T ss_dssp HHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHH
T ss_pred HhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHH
Confidence 34799999999999999998766655555666665543221 13679999999999999999985 56999999
Q ss_pred hcCCCcceeeecccCCCCcccccCC------------------------CceeEEEEEeeeeecceeeecCCCCCCCcce
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRI 192 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~------------------------~~ef~V~vS~lEIYnE~I~DLL~p~~~~L~I 192 (878)
|+|||+||||||||||||||||+|. +..|.|+|||+|||||.|+|||++....+.+
T Consensus 135 l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i 214 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 214 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCE
T ss_pred HCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCcee
Confidence 9999999999999999999999853 3479999999999999999999988776666
Q ss_pred e--ecC-CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeE
Q 002808 193 R--EDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (878)
Q Consensus 193 r--ed~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~L 269 (878)
+ +++ .|+||.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+... .......|+|+|
T Consensus 215 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~----~~~~~~~~kL~l 290 (412)
T 3u06_A 215 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA----EKQEISVGSINL 290 (412)
T ss_dssp EECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEET----TTTEEEEEEEEE
T ss_pred eeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeC----CCCCEEEEEEEE
Confidence 6 444 469999999999999999999999999999999999999999999999999986542 234567899999
Q ss_pred eecCCCCCccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCCh
Q 002808 270 IDLAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSS 349 (878)
Q Consensus 270 VDLAGSEr~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~ 349 (878)
|||||||+.+ .|.|++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||||+..++
T Consensus 291 VDLAGSEr~~---~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~ 366 (412)
T 3u06_A 291 VDLAGSESPK---TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCF 366 (412)
T ss_dssp EECCCCCC-------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGH
T ss_pred EECCCCCcCC---ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhH
Confidence 9999999864 3689999999999999999999999985 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccc-ccccccc
Q 002808 350 EETHNTLKFAHRAKHIEI-LAAQNKL 374 (878)
Q Consensus 350 eETLsTLrFAsRak~Ikn-~~~~N~~ 374 (878)
+||++||+||+|++.|+. .++.|.+
T Consensus 367 ~ETl~TLrfA~rv~~i~~~~~~~n~~ 392 (412)
T 3u06_A 367 QESVKSLRFAASVNSCKMTKAKRNRY 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999984 4555543
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-77 Score=671.55 Aligned_cols=301 Identities=34% Similarity=0.492 Sum_probs=249.3
Q ss_pred CCCCeEEEEecCCCChh-hhccCCeEEEe-cCC---C-EEEe---CCCCCceeEEeccccCCCCcchhHHHHHHHHHHHH
Q 002808 65 SKENVTVTVRFRPLSPR-EIRQGEEIAWY-ADG---E-TILR---NEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~-E~~~g~~~~~~-~d~---~-~i~~---~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (878)
.+|+|+|+|||||+.+. |...+..+.+. .+. . .+.. ......+.|.||+||+++++|++||+.+ .|+|++
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~ 135 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQS 135 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHHH
T ss_pred cCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHHH
Confidence 46899999999999887 33333333332 111 1 2222 1222346899999999999999999975 589999
Q ss_pred hhcCCCcceeeecccCCCCcccccCC----------------------CceeEEEEEeeeeecceeeecCCCCC------
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAG------ 187 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~----------------------~~ef~V~vS~lEIYnE~I~DLL~p~~------ 187 (878)
+|+|||+||||||||||||||||+|+ +..|.|+|||+|||||.|+|||++..
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 215 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDT 215 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------
T ss_pred HhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccccc
Confidence 99999999999999999999999754 34799999999999999999998753
Q ss_pred ---CCcceeecC--CCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCcee
Q 002808 188 ---QNLRIREDS--QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (878)
Q Consensus 188 ---~~L~Ired~--~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 262 (878)
..+.|++++ .|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+.... .+..
T Consensus 216 ~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~ 291 (403)
T 4etp_A 216 SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK----TGAH 291 (403)
T ss_dssp CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETT----TCCE
T ss_pred ccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecC----CCCe
Confidence 356777765 3599999999999999999999999999999999999999999999999999876422 2345
Q ss_pred eeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCC--CCccCCCCchhhhhhccCCCCccceeE
Q 002808 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA--THIPYRDSKLTRLLQSSLSGHGRVSLI 339 (878)
Q Consensus 263 ~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~--~hIPYRdSKLTrLLqdsLGGnskT~mI 339 (878)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|+||
T Consensus 292 ~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi 371 (403)
T 4etp_A 292 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 371 (403)
T ss_dssp EEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEE
T ss_pred eEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEE
Confidence 779999999999999 67899999999999999999999999999987543 599999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHhcccccccc
Q 002808 340 CTVTPSSSSSEETHNTLKFAHRAKHIEILAA 370 (878)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRak~Ikn~~~ 370 (878)
|||||+..+++||++||+||+|++.|++.+.
T Consensus 372 ~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 372 VNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999988764
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.7e-76 Score=648.98 Aligned_cols=288 Identities=30% Similarity=0.458 Sum_probs=226.5
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEEEec---CCCEEEeCCCCCceeEEeccccCCCCcchhHHHHHHHHHHHHhhcC
Q 002808 63 PSSKENVTVTVRFRPLSPREIRQGEEIAWYA---DGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG 139 (878)
Q Consensus 63 ~~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~---d~~~i~~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~G 139 (878)
....++|+|+|||||+.+.|......++..+ ++..++.. .+.|.||+||+++++|++||+.++.|+|+.+|+|
T Consensus 18 ~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~----~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 18 GAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp -CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec----CcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 3456899999999999988754333344433 35556554 4789999999999999999999999999999999
Q ss_pred CCcceeeecccCCCCcccccCCC-------------------------------ceeEEEEEeeeeecceeeecCCCCCC
Q 002808 140 INGTIFAYGVTSSGKTHTMHTPN-------------------------------REFLLRVSYLEIYNEVVNDLLNPAGQ 188 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~g~~-------------------------------~ef~V~vS~lEIYnE~I~DLL~p~~~ 188 (878)
||+||||||||||||||||+|.. ..|.|+|||+|||||+|+|||++...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999997431 24899999999999999999987653
Q ss_pred CcceeecCCCeEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeee
Q 002808 189 NLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268 (878)
Q Consensus 189 ~L~Ired~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~ 268 (878)
...+ +..+.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+. ...|+|+
T Consensus 174 ~~~~-----~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----------~~~skl~ 238 (344)
T 3dc4_A 174 MPMV-----AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------THHSRMN 238 (344)
T ss_dssp SBCC-----SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS----------SCEEEEE
T ss_pred Cccc-----cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec----------CcEEEEE
Confidence 2221 233568999999999999999999999999999999999999999999999742 2468999
Q ss_pred EeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCC
Q 002808 269 LIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSS 347 (878)
Q Consensus 269 LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~ 347 (878)
||||||||| .++++.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+|||||+|+|||||||+..
T Consensus 239 lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~ 317 (344)
T 3dc4_A 239 IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQC 317 (344)
T ss_dssp EEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGG
T ss_pred EEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchh
Confidence 999999999 6789999999999999999999999999999864 79999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcccccccc
Q 002808 348 SSEETHNTLKFAHRAKHIEILAA 370 (878)
Q Consensus 348 ~~eETLsTLrFAsRak~Ikn~~~ 370 (878)
+++||++||+||+||+.....+.
T Consensus 318 ~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 318 DLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp GHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999998865543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.2e-72 Score=673.73 Aligned_cols=297 Identities=34% Similarity=0.540 Sum_probs=233.3
Q ss_pred CCCCeEEEEecC----CCChhhhccCCeEEEecCC--------CEEEeCC----CCCceeEEeccccCCCCcchhHHHHH
Q 002808 65 SKENVTVTVRFR----PLSPREIRQGEEIAWYADG--------ETILRNE----DNPSIAYAYDRVFGPTTTTRHVYDIA 128 (878)
Q Consensus 65 ~~~~IkV~VRVR----Pl~~~E~~~g~~~~~~~d~--------~~i~~~~----~~~~~~F~FD~VF~~~atQeeVY~~~ 128 (878)
..++++|||||| |....|...|..++.+..+ ..|++.. ....+.|.||+||+++++|++||+.+
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~ 451 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL 451 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH
Confidence 468899999999 6666677767665443322 2233221 22346899999999999999999875
Q ss_pred HHHHHHHhhcCCCcceeeecccCCCCcccccCC----------------------CceeEEEEEeeeeecceeeecCCCC
Q 002808 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPA 186 (878)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~----------------------~~ef~V~vS~lEIYnE~I~DLL~p~ 186 (878)
.|+|+.+|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||+|.
T Consensus 452 -~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~ 530 (715)
T 4h1g_A 452 -SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPK 530 (715)
T ss_dssp -HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCC
T ss_pred -HHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCC
Confidence 59999999999999999999999999999864 2368999999999999999999875
Q ss_pred C---CCcceeecC-CC-eEecccEEEEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCce
Q 002808 187 G---QNLRIREDS-QG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (878)
Q Consensus 187 ~---~~L~Ired~-~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~ 261 (878)
. ..+.++++. .| ++|.||+++.|.++++++.+|..|.++|++++|.||.+|||||+||+|+|.+.... ...
T Consensus 531 ~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~----~~~ 606 (715)
T 4h1g_A 531 IDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL----TKE 606 (715)
T ss_dssp CCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT----TCC
T ss_pred CCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC----CCC
Confidence 3 456676654 55 99999999999999999999999999999999999999999999999999875422 234
Q ss_pred eeeeeeeEeecCCCCC-ccccccchhhhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEE
Q 002808 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLIC 340 (878)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa 340 (878)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+|||
T Consensus 607 ~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~ 686 (715)
T 4h1g_A 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686 (715)
T ss_dssp EEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEE
T ss_pred EeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEE
Confidence 6789999999999999 678899999999999999999999999999987778999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHhcccc
Q 002808 341 TVTPSSSSSEETHNTLKFAHRAKHIE 366 (878)
Q Consensus 341 ~ISPs~~~~eETLsTLrFAsRak~Ik 366 (878)
||||+..+++||++||+||+|||+|+
T Consensus 687 ~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 687 NISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999996
No 29
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=2.1e-29 Score=237.99 Aligned_cols=112 Identities=42% Similarity=0.587 Sum_probs=104.4
Q ss_pred cccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHhccccccccccc
Q 002808 294 NKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (878)
Q Consensus 294 NkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~~~N~ 373 (878)
|+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||+|+..+++||++||+||+|||.|+|.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002808 374 LEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLI 406 (878)
Q Consensus 374 ~~~~~~~l~~~le~e~~~~~~l~~~iq~L~~~i 406 (878)
..+. ..+..+++++.+....|+.+|+.|+..+
T Consensus 81 ~~~~-~~l~~~~~~e~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 81 ELTA-EEWKKKYEKEKEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 4567888888888999999999998876
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=1e-29 Score=233.56 Aligned_cols=98 Identities=43% Similarity=0.632 Sum_probs=88.5
Q ss_pred hhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHhccccccc
Q 002808 290 GSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILA 369 (878)
Q Consensus 290 ~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~~ 369 (878)
+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||+.|+|.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHH
Q 002808 370 AQNKLEDGQVKLQSRLEEE 388 (878)
Q Consensus 370 ~~N~~~~~~~~l~~~le~e 388 (878)
.+|...+.. .+.+++++|
T Consensus 81 ~~n~~~~~~-~l~~~~~~e 98 (100)
T 2kin_B 81 SVNLELTAE-EWKKKYEKE 98 (100)
T ss_dssp CCEEECCHH-HHHHHHHHH
T ss_pred eeccCCCHH-HHHHHHHHh
Confidence 999755543 345555544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-23 Score=222.61 Aligned_cols=257 Identities=11% Similarity=0.131 Sum_probs=168.4
Q ss_pred CCCCeEEEEecCCCC-hhhhccCCeEEEecCCCEEEeCCCCCceeEEeccccCCCCcch--hHHHHHHHHHHHHhhc-CC
Q 002808 65 SKENVTVTVRFRPLS-PREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTR--HVYDIAAQHVVSGAMD-GI 140 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~-~~E~~~g~~~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~atQe--eVY~~~~~plV~~vl~-Gy 140 (878)
.+|+|||+|||||.. + +...+.++++. +.++. ..+.|.||+||++...|+ +||+. +.++|+.+++ ||
T Consensus 22 LKGnIRVFcrvrp~~~p-----~~~~v~y~~~~-I~v~~--~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLP-----ENLLFDYENGV-ITQGL--SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp HHTCCEEEEEECGGGSC-----TTEEEETTTTE-EEETT--TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTC
T ss_pred hhCceEEEEEeccccCC-----ccceeecCccc-eeecC--CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCC
Confidence 469999999999964 3 23334455544 33332 347899999999999999 99997 6899999999 99
Q ss_pred CcceeeecccCCCCccccc------CCC---ceeEEEEEeeeee-cceeeecCCC--CCCCcceeecCCC-eEecccEEE
Q 002808 141 NGTIFAYGVTSSGKTHTMH------TPN---REFLLRVSYLEIY-NEVVNDLLNP--AGQNLRIREDSQG-TFVEGVKEE 207 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~------g~~---~ef~V~vS~lEIY-nE~I~DLL~p--~~~~L~Ired~~G-~~V~gLse~ 207 (878)
|+|||||||||||||..-+ ... ..|.+.++|+||| ||.++|||.. .+..+.|+-+..| ++|.|++.+
T Consensus 93 NvcIfSyGQTGsGKT~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i 172 (298)
T 2o0a_A 93 NFNLISLSTTPHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLV 172 (298)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCE
T ss_pred ceEEEEECCCCCCccHHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEE
Confidence 9999999999999996533 112 6899999999999 9999999963 2235677777666 799999999
Q ss_pred EecC-HHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCCccccccchh
Q 002808 208 VVLS-PAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSKAETTGVR 286 (878)
Q Consensus 208 ~V~S-~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr~kt~~~G~r 286 (878)
.|.+ ++|+..++..+.. +..|+ +.-.|..+.+......... ......--++|+.+....
T Consensus 173 ~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~-~~~~~~~d~yf~e~~~~~---------- 232 (298)
T 2o0a_A 173 IIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDG-NNDPVPVDFYFIELNNLK---------- 232 (298)
T ss_dssp EESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC--------CCCEEEEEEEECSHH----------
T ss_pred EccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccc-cCCCCceEEEEEEeCCHH----------
Confidence 9999 8998887733221 11222 2355666666542111111 111122347888775321
Q ss_pred hhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHhcccc
Q 002808 287 RKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIE 366 (878)
Q Consensus 287 lkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsRak~Ik 366 (878)
+...|.+.+ ..+ -+-.|+++-+|+.-|. ..+.++++++.-... .-.-|..+++..+++
T Consensus 233 ---------~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~----~~~lL~~s~~i~~~~ 290 (298)
T 2o0a_A 233 ---------SIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN----VNKLLTISEEVQTQL 290 (298)
T ss_dssp ---------HHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG----HHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCc----hhHHHHHHHHhhccc
Confidence 122333322 222 3556888999988774 578899999986542 234788999998888
Q ss_pred cccccc
Q 002808 367 ILAAQN 372 (878)
Q Consensus 367 n~~~~N 372 (878)
|....+
T Consensus 291 ~~~~~~ 296 (298)
T 2o0a_A 291 CKRKKK 296 (298)
T ss_dssp C-----
T ss_pred Cccccc
Confidence 766554
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.31 E-value=0.0005 Score=86.86 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||..+- .....+ -.|.|.||+..|.+|||||.+.
T Consensus 151 Hi~aia~-~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 151 HIYAIAD-TAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CHHHHHH-HHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred cHhhhHH-HHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 5665332 233333 3799999999999999999885
No 33
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.05 E-value=0.32 Score=48.90 Aligned_cols=22 Identities=0% Similarity=-0.126 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhHHHHHhhhH
Q 002808 518 DQIDLLREQQKILAGEVALHSS 539 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss 539 (878)
.+++.+..+++.+..++.....
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~ 34 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAED 34 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554333
No 34
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.04 E-value=0.00088 Score=84.67 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=11.2
Q ss_pred eeeeEeecCCCCCcc
Q 002808 265 SQLHLIDLAGSESSK 279 (878)
Q Consensus 265 SkL~LVDLAGSEr~k 279 (878)
.-|-++|.+|.|...
T Consensus 458 ~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 458 SFLGILDIAGFEIFE 472 (1184)
T ss_dssp EEEEEEECCCCCCCS
T ss_pred ceEEEeecCCcCCCC
Confidence 457788999998643
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.66 E-value=0.29 Score=61.46 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||..+ ......+ -.+.|.||+.-|.+|||||.+.
T Consensus 138 HifaiA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 138 HIFAVA-EEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHHHH-HHHHHHHHhcCCCcEEEEcCCCCCCccchH
Confidence 566533 2333333 3699999999999999999885
No 36
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.65 E-value=0.016 Score=56.32 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=36.4
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.....+..|..+++ .+..++.++--.-...++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 4688887766566888886 44566655433334567889999999999984
No 37
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.46 Score=40.62 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHH
Q 002808 553 QKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQ 632 (878)
Q Consensus 553 ~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~ 632 (878)
+++-+...+..|+.|+++|..+|+.|+..| -+|++|-+.|.++|=.
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i----------------------------------~lk~kd~ErLNDEiis 57 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVI----------------------------------ALKNKNTERLNDELIS 57 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHhcccHHHhhHHHHH
Confidence 344455578999999999999999887766 2688888889999999
Q ss_pred HHHHHHhHHHHHHHHHH
Q 002808 633 KICECEGLQETIGFLKQ 649 (878)
Q Consensus 633 K~~e~~~lqeel~~Lk~ 649 (878)
..-|++-||..++.||+
T Consensus 58 lNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 58 GTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 99999999888888775
No 38
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.76 E-value=0.035 Score=54.80 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=34.7
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCC-cceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN-GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN-~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.+......+..+++. +..++...-.++. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 46788776655566667773 3445554433322 678999999999999874
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.67 E-value=3.3 Score=43.43 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAA---RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~---~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
..+++.+..+++.+..+|.....-+++..++.. ++.+ +..|+.||+..+..|..||..|
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE-------~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE-------LRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888888899988888988888843 3344 4555556666666666666666
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.62 E-value=2 Score=49.53 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhc-ccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHH
Q 002808 558 QVEIKKLRDEIKGKNDQIALLEKQIADSIMT-SHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICE 636 (878)
Q Consensus 558 q~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~-~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e 636 (878)
+.++..++.++...+..+..+++.|.+.... ...+.+..+..+-+.+...+..++. +....++..++++.+++..+
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 538 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQ---AFKLRETQARRTEADAKQKE 538 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhh---hhhHHHHHHHHHhhhhhhcc
Confidence 3444555555544444444444444332221 1223333333343444444443332 23334666666666666666
Q ss_pred HHhHHHHHHHHHHHH
Q 002808 637 CEGLQETIGFLKQQL 651 (878)
Q Consensus 637 ~~~lqeel~~Lk~ql 651 (878)
+..+++++..++.++
T Consensus 539 ~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 539 TEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHH
Confidence 666666666666664
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.14 E-value=3.4 Score=57.17 Aligned_cols=213 Identities=15% Similarity=0.189 Sum_probs=110.7
Q ss_pred CCCCCchHHHHHHHHHHhhhHHHHHhhh----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHH-HHHHHhhh
Q 002808 511 STSIKTIDQIDLLREQQKILAGEVALHS----SALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIAL-LEKQIADS 585 (878)
Q Consensus 511 ~~~~~~~d~~dlL~eQlk~~~~Ei~~~s----s~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~-Le~~i~~s 585 (878)
.+...+-+-+..-..-+..+..||..+. .=|.+|.+ +.-+=+.+|.++..++-++++|+.+... |++-..+.
T Consensus 1892 vTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e---t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~ 1968 (3245)
T 3vkg_A 1892 VTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD---TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777766666777777777663 33444433 3334456788888888888888777663 44433344
Q ss_pred hhcccCcccchhhhHHHHHHHHHhhhhhh-----------------hhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002808 586 IMTSHNTMDNSEVSQSFAELAAQLNEKSF-----------------ELEVKAADNRIIQEQLNQKICECEGLQETIGFLK 648 (878)
Q Consensus 586 ~~~~~~k~~~~ev~qal~eL~~q~~eKs~-----------------elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk 648 (878)
.+++..|..+.+....+.+.+....+.-. +|+.-.++....+++|+++..++.+++++|+.||
T Consensus 1969 ~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~ 2048 (3245)
T 3vkg_A 1969 QAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYK 2048 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333222222222222221111 1112224445556666666666777777777777
Q ss_pred HHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhh--HHHHHHHHHHHHHHHHhHHHhHhhhhhhhhh
Q 002808 649 QQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINED--SRLQVQAAEIEELNRKVTELTEAKEQLELRN 726 (878)
Q Consensus 649 ~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~~e~e~lk~~~~~l~e~~~~l~~~n 726 (878)
.++..+...+. ..++..+. .++..-..-|..|.-|+.|=++.-.+|+.+.
T Consensus 2049 ~~~~~~~~ek~----------------------------~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2049 EEYATLIRETE----------------------------QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 77665443220 00011111 1222224457777777777777777777777
Q ss_pred chhhhhhhhhhhhhHHHHHHHHhhHHHHHHHh
Q 002808 727 QKLSEESSYAKGLASAAAVELKALSEEVAKLM 758 (878)
Q Consensus 727 ~kl~ee~~yak~lasaaavelk~l~~evtkl~ 758 (878)
..|.-.+- ||||.-.=+=....+.-+.+
T Consensus 2101 ~~L~GD~L----LaaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2101 STVVGDVV----LASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHHH----HHHHHHHTGGGSCHHHHHHH
T ss_pred HhccHHHH----HHHHHHHHcCCCCHHHHHHH
Confidence 76655442 33333333444444444333
No 42
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.81 E-value=0.056 Score=58.14 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=34.6
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3678776544435556666 44556655444445678899999999999984
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.10 E-value=2.2 Score=53.71 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=11.3
Q ss_pred eeeeEeecCCCCCcc
Q 002808 265 SQLHLIDLAGSESSK 279 (878)
Q Consensus 265 SkL~LVDLAGSEr~k 279 (878)
.-|-++|.+|.|...
T Consensus 431 ~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 431 SFIGVLDIYGFETFE 445 (1080)
T ss_dssp EEEEEEEECCCCCCS
T ss_pred ceEEeeccCCccccC
Confidence 457788999999643
No 44
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.08 E-value=0.19 Score=53.42 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=33.0
Q ss_pred eccccCCCCcchhHHHHHHHHHHHHhhcCCC----cceeeecccCCCCccccc
Q 002808 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN----GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN----~tIfAYGqTGSGKTyTM~ 159 (878)
||.+|+...--..+.+.++..++...+...+ ..|+-||++|+|||+...
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4444444333456667777777777664222 357889999999999875
No 45
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.44 E-value=16 Score=36.38 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=30.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 619 KAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 619 ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
-..-++.||+.+.........|+.++..|+.||..
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567889999999999999999999999999866
No 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.93 E-value=16 Score=38.22 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=56.6
Q ss_pred HHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccc
Q 002808 703 AEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSA 782 (878)
Q Consensus 703 ~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~ 782 (878)
.+|..|+.+...|-.+-..|+..-..|.....-++.-...+--+++.+-.+|..+...=.+..+.|..+++.
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~-------- 89 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE-------- 89 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH--------
Confidence 355555555555554444444444444444444444444444444444444444444444444444433311
Q ss_pred cccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHH
Q 002808 783 VRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYL 846 (878)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~l 846 (878)
.....|.+|+..-+.|-..||.-+.+-..+-++++..+++.+.+-+.+
T Consensus 90 ----------------kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~ 137 (256)
T 3na7_A 90 ----------------RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL 137 (256)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 034555666666555555555555554444444444444444333333
No 47
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.51 E-value=0.36 Score=49.61 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=33.1
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHH-----HHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVV-----SGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV-----~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+.||.+.+.+...+.+.+. +..+- ..+-......|+-||++|+|||+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 47899999887766666553 22211 11111234458899999999999985
No 48
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.59 E-value=0.16 Score=55.82 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=33.1
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-Hhhc---CCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD---GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~---GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+.||.+.+.+.--+.+...+..|+.. .++. .-...|+-||++|+|||+...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence 467888888554444444444444431 1112 224578999999999999875
No 49
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.40 E-value=0.38 Score=45.38 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
...++..+..+....|+-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 3444555555666788999999999999874
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.11 E-value=0.42 Score=50.82 Aligned_cols=49 Identities=22% Similarity=0.488 Sum_probs=30.4
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+||.++.. ..+...+.. +..++..-- +....|+-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 5889877632 234445543 333443211 133568889999999999985
No 51
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.08 E-value=0.3 Score=50.25 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=22.8
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||++|+|||+...
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHHH
Confidence 4789988764433333332 222222 235678889999999999863
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.18 E-value=6.6 Score=37.80 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLS 730 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ 730 (878)
..++++++++..+|.+++..|+.++.||-
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777773
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.65 E-value=0.37 Score=51.17 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=29.5
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+||.+++.+ .+... +...++.+..+.|+-||++|+|||+...
T Consensus 20 ~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 20 VFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp CCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHHH
T ss_pred CCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHHH
Confidence 58899988742 33332 2233344444569999999999999874
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.51 E-value=7.7 Score=44.63 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002808 616 LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELR 658 (878)
Q Consensus 616 lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~ 658 (878)
++---.+...|..++........++..+++.++++|.+..+..
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333355666666777777777777788888888888776654
No 55
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.46 E-value=0.32 Score=50.42 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=33.9
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-----HhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-----GAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-----~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|.||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 578999888665555555544443322 1111344568899999999999985
No 56
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.36 E-value=0.45 Score=45.02 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 444555555667788999999999999874
No 57
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=82.95 E-value=15 Score=41.96 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHHhhhHHHHHhhhHHHHHHHH
Q 002808 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSE 546 (878)
Q Consensus 515 ~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~e 546 (878)
++.+.++.-.++|+..-++|...++..+.|.+
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~ 124 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVN 124 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34566777788888888888888887777754
No 58
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.88 E-value=0.24 Score=50.75 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=29.6
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHH-HHhhcCC----CcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVV-SGAMDGI----NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV-~~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 4789998876543333332 221110 0122222 2238999999999999975
No 59
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.62 E-value=0.42 Score=50.66 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=34.1
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHH-hhc----CCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSG-AMD----GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~-vl~----GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.|.+.+..-+.+.+.+..|+... .+. .....|+-||++|+|||+.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 3678888876655556666555443221 111 234568999999999999874
No 60
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.02 E-value=60 Score=45.43 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHH
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAE 767 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~e 767 (878)
+.++++||.+..+++.+|..|+.+-.+...=-.=|..|=++.+-|=..-.+.|..|..+-..|..+
T Consensus 2041 e~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2041 EKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 456777777777777777777766555444445677777777778778888888888888888777
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=81.66 E-value=0.43 Score=51.94 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=22.0
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-..+-.|...+|+-||++|+|||.++.
T Consensus 37 ~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 37 YDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 333446788899999999999999984
No 62
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.45 E-value=4.2 Score=44.28 Aligned_cols=236 Identities=12% Similarity=0.169 Sum_probs=124.7
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEEeccccCCCC-cchhHHHHHHHHHHHHhh-cCCCc
Q 002808 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTT-TTRHVYDIAAQHVVSGAM-DGING 142 (878)
Q Consensus 65 ~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~a-tQeeVY~~~~~plV~~vl-~GyN~ 142 (878)
-+|.||+|+=+-+-. .+..+.+.-...+|. .......|.|++|++... +-.+++..-.+..++-++ .+.|+
T Consensus 57 lKG~IRcFAYi~~~~-----~p~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nf 129 (333)
T 4etp_B 57 QKGTMRVYAYVMEQN-----LPENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNF 129 (333)
T ss_dssp HHTCCEEEEEECCSS-----CCSSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCE
T ss_pred hcCcEEEEEEECccc-----CCccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCe
Confidence 368888888876622 122233322333443 223467899999997665 345566667789999888 89999
Q ss_pred ceeeecccCCCCccc-----ccCC----CceeEEEEEeeeeecce-eeecCCCCC----CC--cceeecCCCeEecccEE
Q 002808 143 TIFAYGVTSSGKTHT-----MHTP----NREFLLRVSYLEIYNEV-VNDLLNPAG----QN--LRIREDSQGTFVEGVKE 206 (878)
Q Consensus 143 tIfAYGqTGSGKTyT-----M~g~----~~ef~V~vS~lEIYnE~-I~DLL~p~~----~~--L~Ired~~G~~V~gLse 206 (878)
.||..|..--+...- |... ...|.+.+-|+.+-++. ..|||.+.. .. +.+.++. +-+ +-..
T Consensus 130 slIsis~~~w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee~s--I~l-dS~~ 206 (333)
T 4etp_B 130 NLISLSTTPHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHS--ISL-DSKL 206 (333)
T ss_dssp EEEEEESSCCCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEETTE--EEC-CSCC
T ss_pred eEEEecCCCcHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeecce--Eee-cceE
Confidence 999999873222111 1133 47899999998888776 799998752 22 3333322 211 1122
Q ss_pred EEecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCCccccccchh
Q 002808 207 EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSKAETTGVR 286 (878)
Q Consensus 207 ~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr~kt~~~G~r 286 (878)
+.+.+..+.+..+.. ..+..+. -...-.|+.+.+.....+. ........-.++||.+-+..
T Consensus 207 i~i~~~~~~l~~~~k-------l~~~~~~-~~~GI~IlKfqf~~~~~~~-~~n~~~~~~~fYFiEi~~~~---------- 267 (333)
T 4etp_B 207 VIIENGLEDLPLNFS-------ADEHPNL-PHSGMGIIKVQFFPRDSKS-DGNNDPVPVDFYFIELNNLK---------- 267 (333)
T ss_dssp EEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC---------CCCEEEEEEEECSHH----------
T ss_pred EEeccccccchhhhc-------cccCCCC-CCCCceEEEEEEEecCccc-ccccCCcceeEEEEEecChh----------
Confidence 333333221111110 0000000 1123446666666543210 11111223468999887533
Q ss_pred hhhhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCC
Q 002808 287 RKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSS 347 (878)
Q Consensus 287 lkE~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~ 347 (878)
....|.++|.. + -.-.|+++-+|+--| -..+.++|+++.-...
T Consensus 268 ---------ti~~l~~~i~~---~-----~~~~spi~~ilkkLl-~~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 268 ---------SIEQFDKSIFK---K-----ESAETPIALVLKKLI-SDTKSFFLLNLNDSKN 310 (333)
T ss_dssp ---------HHHHHHSCC------------CCCCHHHHHHHHHH-HHSBCEEEEEECCSTT
T ss_pred ---------HHHHHHhhcCc---c-----cccCCCHHHHHHHHH-hhCcceEEEEcCCcch
Confidence 12334443321 1 134567788887766 3578899999976653
No 63
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.39 E-value=0.49 Score=49.39 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=34.3
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-Hhhc---CCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD---GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~---GyN~tIfAYGqTGSGKTyTM~ 159 (878)
...||.+.+.+..-+.+.+.+..|+.. .++. .....|+-||++|+|||+.+.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 467888887655445555555454432 1222 235678999999999999874
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.13 E-value=0.8 Score=45.29 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=28.1
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++||.+++. ..+..++.. +..++ .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 567766652 233444442 22233 3356778999999999999974
No 65
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.88 E-value=0.52 Score=50.26 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=25.1
Q ss_pred cchhHHHHHHHHHHHHhh-cCCCcceeeecccCCCCccccc
Q 002808 120 TTRHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 120 tQeeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++...+.+.. .+..++ .+...+|+-||++|+|||+.+.
T Consensus 23 gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 23 HREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34445543332 233333 3556689999999999999985
No 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.72 E-value=0.4 Score=49.97 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=29.5
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHH-HHhhcCC----CcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVV-SGAMDGI----NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV-~~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.|.+.+.....+.+. ...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 47888888765443333322 21110 1122222 2238999999999999975
No 67
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.59 E-value=0.51 Score=51.38 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=33.8
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHh----hcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGA----MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~v----l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
...||.+++.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+...
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 35788888755444445554444433211 23456679999999999999874
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.00 E-value=0.89 Score=51.17 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=28.7
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+||..... ..+...+. .+..++.. .|....+|-||++|+||||.+.
T Consensus 101 ~~tfd~fv~g-~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVVG-PGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCCC-TTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCCC-CchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 5889875532 23333443 22333332 1213468889999999999985
No 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.42 E-value=1.3 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=18.9
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
......|+-||++|+|||+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHH
Confidence 5566789999999999999874
No 70
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.14 E-value=66 Score=32.55 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 002808 800 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESK 840 (878)
Q Consensus 800 ~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k 840 (878)
+++|+..=++..-+|-|-||.=|-||+++..+.||=-||.+
T Consensus 131 SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~r 171 (189)
T 2v71_A 131 SLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888888888888888888777777764
No 71
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=77.10 E-value=0.45 Score=48.31 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=17.0
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44568999999999999875
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.93 E-value=0.87 Score=43.55 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=15.5
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999985
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.90 E-value=3.5 Score=37.17 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=63.0
Q ss_pred HhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccC
Q 002808 717 EAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQN 796 (878)
Q Consensus 717 e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (878)
.||.++..-|-+|| +| =+.|--|-.||..|..++...+... . +
T Consensus 6 ~EKe~mq~LNdRlA---sy---------------IdKVR~LEqqN~~Le~~i~~l~~~~-------------~--~---- 48 (93)
T 3s4r_A 6 NEKVELQELNDRFA---NL---------------IDKVRFLEQQNKILLAELEQLKGQG-------------K--S---- 48 (93)
T ss_dssp CCCCCHHHHHHHHH---HH---------------HHHHHHHHHHHHHHHHHHHHHHHHH-------------H--H----
T ss_pred HHHHHHHHHHHHHH---HH---------------HHHHHHHHHHHHHHHHHHHHHhhcc-------------C--C----
Confidence 46666766676663 22 3679999999999999987665210 0 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHhh
Q 002808 797 QDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLKK 862 (878)
Q Consensus 797 ~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvaklkk 862 (878)
. + ...||+.+ .+|+++|++...--+-|+-|+.|||..|..+|+
T Consensus 49 ------~----~------~~~ye~~i-------~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 49 ------R----L------GDLYEEEM-------RELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp ------H----H------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------C----c------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 12355554 589999999999999999999999999999985
No 74
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.63 E-value=1.6 Score=49.53 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=36.5
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-Hhhc--CC--CcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
.+||.|-+-+..-+++.+.+.-|+.. ..+. |. ...|+-||++|+|||++..
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 57888887766666677777666654 3443 32 3568999999999999875
No 75
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=76.59 E-value=0.8 Score=49.26 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=34.1
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-HhhcCC---CcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI---NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (878)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+...
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 57888887655555555555555442 344442 2468899999999999874
No 76
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=75.81 E-value=1.3 Score=42.81 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=17.3
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|....|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433459999999999999874
No 77
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.71 E-value=0.93 Score=51.43 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=37.9
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-Hhhc--C--CCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--G--INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM~ 159 (878)
-+||.|-+-+..-+++.+.+..|+.. ..+. | +-..|+-||++|+|||++..
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHH
Confidence 57888888776667777777777763 3443 3 23568899999999998875
No 78
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.39 E-value=1.3 Score=43.30 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..++.|.| ++..++||||||.+..
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAYL 58 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHHH
Confidence 334567755 6778999999997653
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.28 E-value=1.1 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=18.5
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 344567766 678899999999883
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=75.15 E-value=19 Score=31.03 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~ 587 (878)
+...|+.+..+++.-++++..||++|.++..
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999976654
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.03 E-value=1.7 Score=49.28 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=35.2
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-Hhhc--CC--CcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
-+||.|-|-+.--+.+.+.+..|+.. ..+. |. .-.|+-||++|+|||+...
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHH
Confidence 57788877665556666666666654 3333 32 3458999999999999875
No 82
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.20 E-value=0.66 Score=47.49 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=30.5
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-Hhhc----CCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD----GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~----GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+.||.+.+.+..-+.+.+. +..+.. ..+. .....|+-||++|+|||+.+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHH
Confidence 46888888765444444432 222211 1111 234468999999999999874
No 83
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=73.96 E-value=1 Score=47.03 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=17.1
Q ss_pred CCCcceeeecccCCCCccccc
Q 002808 139 GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.....|+-||++|+|||+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 334468999999999999874
No 84
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.78 E-value=1.3 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=17.6
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.| ++..++||||||.+.
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHHH
Confidence 34567765 677899999999874
No 85
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.65 E-value=1.8 Score=46.32 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=27.8
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCC-c--ceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN-G--TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN-~--tIfAYGqTGSGKTyTM~ 159 (878)
|.++.+++ ++...+.+. ..+..++.|.. . +++-||++|+|||+++.
T Consensus 14 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp CCCSCCTT----CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 44444443 344444332 33444554533 4 68899999999999984
No 86
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=72.64 E-value=50 Score=32.80 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQ----ETIGFLKQQLND 653 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lq----eel~~Lk~ql~~ 653 (878)
.||+.|+|.|...--++..++ =++-.||+-+..
T Consensus 118 ~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 788888888888777777777 556666666544
No 87
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.26 E-value=1.1 Score=47.90 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=33.1
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-HhhcCC---CcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI---NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (878)
+.||.|.+....-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+...
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 57888887655555555555444432 222332 2458999999999999875
No 88
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.24 E-value=15 Score=32.21 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~ 587 (878)
.+...|+.+..++.+-+++++.||++|.++..
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999999976654
No 89
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.13 E-value=1.8 Score=46.34 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=25.9
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+.+++ |..+.+ .+-..+-.|--..++-||++|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4666664 444443 23333334532337789999999999985
No 90
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=71.48 E-value=1.3 Score=48.22 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=33.8
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-HhhcCC---CcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI---NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (878)
..+||.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+...
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 367888887655555555555444332 233332 2358889999999999874
No 91
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=71.00 E-value=1.6 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=18.7
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+ ++..++||||||.+.
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 345667876 688899999999874
No 92
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=70.99 E-value=0.58 Score=49.30 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=28.3
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-HhhcCCC----cceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGIN----GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~GyN----~tIfAYGqTGSGKTyTM~ 159 (878)
.+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||++|+|||+.+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 56777766544445555555544432 2334332 228899999999999875
No 93
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.94 E-value=3.5 Score=46.36 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=37.3
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-Hhhc--CC--CcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
-+||.|-|-+.--+++.+.+.-|+.. ..+. |. ...|+-||++|+|||+...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 57888887766667777777777764 3443 32 3568999999999999875
No 94
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.72 E-value=49 Score=32.48 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=37.6
Q ss_pred chhhhHHHHHHHHHhhhhhhh--------hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 595 NSEVSQSFAELAAQLNEKSFE--------LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~e--------lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
...+-+=|++|+..|=+-+-. -...-.-|+.|+++|..+..-+..+|..|..||..+
T Consensus 81 ~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655333221 112225678888999999888888888888888764
No 95
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=70.40 E-value=1.1 Score=45.46 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=18.5
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.| ++.+++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567766 678999999999874
No 96
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=70.01 E-value=1.8 Score=46.42 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=31.4
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCc--ceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING--TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~--tIfAYGqTGSGKTyTM~ 159 (878)
.+.||.+++. +.+.. .+..++..+..|... .|+-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3567777764 33333 233455555566654 78999999999999875
No 97
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.94 E-value=1.8 Score=45.76 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+.+++... +. ..+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~----~~----~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDH----AV----TVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCT----TH----HHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHH----HH----HHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 4666665432 22 233344445543448899999999999874
No 98
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=68.73 E-value=1.9 Score=43.21 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=18.0
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 344567766 567789999999874
No 99
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=68.35 E-value=1.8 Score=48.71 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+++..++..-.+.|.-.|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 34555555556778899999999999985
No 100
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.78 E-value=1.7 Score=46.16 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=17.8
Q ss_pred CCCcceeeecccCCCCccccc
Q 002808 139 GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+....|+-||++|+|||+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 445688999999999999984
No 101
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=67.73 E-value=1.7 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.1
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.| ++..++||||||.+.
T Consensus 85 i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 85 IRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHhCCCc--EEEEccCCCCchHHH
Confidence 344566765 678899999999874
No 102
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=67.72 E-value=4.8 Score=35.49 Aligned_cols=32 Identities=38% Similarity=0.495 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHHHhHhhhh-------hhhhhchhhhh
Q 002808 701 QAAEIEELNRKVTELTEAKEQ-------LELRNQKLSEE 732 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~-------l~~~n~kl~ee 732 (878)
.+-||++||.+...|.+++.. |+..|++|-+|
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 355788888888887777766 66666666655
No 103
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=67.67 E-value=2 Score=42.52 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.5
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..++.|.| ++..++||||||.+..
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~~ 69 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVFV 69 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhhh
Confidence 344567766 6677899999998753
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.65 E-value=2.2 Score=45.64 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=28.1
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhc-CCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMD-GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~-GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|.++.+++ ++...+.+. ..+..++. +...+|+-||++|+|||+++.
T Consensus 17 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 17 SVFKEIPF----REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp HHCSSCTT----CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 44444444 344444333 23344443 445589999999999999874
No 105
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=67.09 E-value=1.1 Score=43.67 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=17.3
Q ss_pred HhhcCCCcceeeecccCCCCccccc
Q 002808 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.|.+ ++.+|+||+|||++..
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHHH
Confidence 3455654 6678999999999864
No 106
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=66.26 E-value=1.4 Score=49.68 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=30.8
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-HhhcC---CCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG---INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G---yN~tIfAYGqTGSGKTyTM~ 159 (878)
...||.|.+.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 367888877543333333333333321 22333 23568889999999999874
No 107
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.08 E-value=2.3 Score=45.14 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|-...++++++||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45567775556889999999999874
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.01 E-value=2 Score=47.33 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=21.1
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++.+++.--.+.|.-.|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 3444454555688889999999999985
No 109
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=65.64 E-value=2.7 Score=43.79 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=25.9
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.||.+.+ |+.+.+.+ ...+-.|....++-||++|+|||++..
T Consensus 23 ~~~~~~g----~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRL----KHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp STTTCCS----CHHHHHHH----HHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred CHHHhhC----CHHHHHHH----HHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 3555554 45554432 222234544458899999999999874
No 110
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.43 E-value=16 Score=35.07 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 514 ~~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
.++.|+.-.+.++.+.+..++.....-+..|+.+.. ..|+++..+..++...++++..|+++|.
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~------~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI------AAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777776666667776632 2444555555555555555555555553
No 111
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.34 E-value=2.9 Score=47.07 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=31.3
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCC--cceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN--GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN--~tIfAYGqTGSGKTyTM~ 159 (878)
.|.||.|.+ |+.+.+. +..++..+..|.. ..|+-||++|+|||+...
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 466777775 4455443 2345555656653 368889999999999874
No 112
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=65.11 E-value=2.5 Score=42.98 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.| ++..++||||||.+.
T Consensus 55 ~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 55 PAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 34567766 567789999999874
No 113
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=64.77 E-value=2.4 Score=42.22 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=17.9
Q ss_pred HHhhcCCCcceeeecccCCCCccccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++.|.| ++..++||||||.+..
T Consensus 52 ~~~~~~~~--~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 52 PIILQGID--LIVVAQTGTGKTLSYL 75 (228)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHHH
Confidence 44567766 4778999999998743
No 114
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=64.35 E-value=2.2 Score=43.22 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHHhhcCCCcceeeecccCCCCcccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
++..+..|- .++..|+||||||..+
T Consensus 69 ~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 344455564 4677899999999765
No 115
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.24 E-value=2.9 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+ ++..++||||||.+.
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHHH
Confidence 345567877 678899999999874
No 116
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=64.24 E-value=51 Score=29.77 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESS 734 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~ 734 (878)
-+--|++..++.+|.+....|..+|++|-.|++
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q~~~L~~~~~ 92 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQREFNKLKVGCH 92 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455678888999999999999999999998875
No 117
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=63.61 E-value=3.6 Score=44.22 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.2
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++-||++|+|||+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 346779999999999975
No 118
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=63.44 E-value=2.3 Score=48.67 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=30.3
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-Hhh----cCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAM----DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl----~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..||.+.+....-+.+++.+..++-. .++ ......|+-||++|+|||+...
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHH
Confidence 45565555444444555544443221 111 2345679999999999999875
No 119
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=63.40 E-value=2.5 Score=42.75 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.2
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.| ++..++||||||.+.
T Consensus 61 ~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCcCHHHHHH
Confidence 34567765 566789999999884
No 120
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.84 E-value=1.5 Score=50.31 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=35.5
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-Hhhc--C--CCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--G--INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM~ 159 (878)
.+||.|-+-+.--+++.+.+.-|+.. ..+. | .--.|+-||++|+|||++..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 57788877665556666666666654 3343 3 34568999999999998864
No 121
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.66 E-value=3.2 Score=44.12 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=23.9
Q ss_pred HHHHHHhhcCC---CcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (878)
...+..++.|. --||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44567778876 3479999999999999875
No 122
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=62.62 E-value=2.9 Score=41.91 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=16.9
Q ss_pred HhhcCCCcceeeecccCCCCcccc
Q 002808 135 GAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
.++.|.| ++..++||||||.+.
T Consensus 57 ~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 57 LGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHhCCCC--EEEECCCCCcHHHHH
Confidence 3567766 566789999999874
No 123
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.17 E-value=8.7 Score=43.61 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=35.0
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-Hhhc--C--CCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--G--INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM~ 159 (878)
-+||.|-+-+.--+++.+.+.-|+.. ..+. | +-..|+-||++|+|||+...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHH
Confidence 46777776655556666666666643 3333 3 33579999999999998874
No 124
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=61.63 E-value=3.1 Score=42.57 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=17.3
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.+ ++..++||||||.+.
T Consensus 75 ~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 75 PLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEEcCCCCCchhHh
Confidence 34567765 566789999999874
No 125
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=61.44 E-value=4.3 Score=37.96 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.4
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
.+..|+-||++|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34568889999999998764
No 126
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=60.95 E-value=3.6 Score=42.53 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.4
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-||++|+|||++..
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578899999999999874
No 127
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=60.88 E-value=3.1 Score=38.92 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCCcceeeecccCCCCccccc
Q 002808 139 GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..+..|+-||++|+|||+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456678999999999998863
No 128
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.80 E-value=26 Score=31.73 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 626 IQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 626 lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
|.+.+......+..++.++..|+.+|...+.
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555556667777777777888777554
No 129
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.74 E-value=2.9 Score=43.82 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=16.5
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
-...|.-.|+||||||.+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34567788999999999985
No 130
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.46 E-value=21 Score=31.89 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 627 QEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 627 qEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.+.+......+..++.++..|+.+|..
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666654
No 131
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.26 E-value=18 Score=33.03 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 622 DNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 622 dN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
+...|.+++....-++..|.+++..|.-+|-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777788888888888877755
No 132
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.19 E-value=1.3e+02 Score=29.40 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 002808 805 KRELALSREREVSYEAALLEKDQQEAELQRKVEESKKR 842 (878)
Q Consensus 805 ~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~ 842 (878)
+++-..-..|-..|+..|.+++-+=.-|+..+-+-|.-
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666677777777777776666666665553
No 133
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=60.05 E-value=3.5 Score=44.23 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+..++..++||||||.+.
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 34556775667788999999999874
No 134
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=59.88 E-value=2.2 Score=42.38 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=17.2
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.| ++..++||||||.+.
T Consensus 36 ~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 36 PGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 34556765 567799999999874
No 135
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.59 E-value=14 Score=33.77 Aligned_cols=69 Identities=26% Similarity=0.276 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhh--hh--------hhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHh
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSE--ES--------SYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAA 770 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~e--e~--------~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~ 770 (878)
-..+|+.|..+..+|.++|+.||.+--+..= +. -|..-.|+.|-... .++|.||..++++|-.-+.+
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~---~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL---REDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988755322 21 23556777776554 48999999999999766554
Q ss_pred hc
Q 002808 771 AK 772 (878)
Q Consensus 771 ~~ 772 (878)
.-
T Consensus 94 lE 95 (100)
T 1go4_E 94 ME 95 (100)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 136
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=59.53 E-value=3.3 Score=46.24 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+..++..|+||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 44556776677899999999999873
No 137
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=59.53 E-value=5.3 Score=45.21 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=26.9
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.||.|++. ..... .++..+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~i~----~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHHHH----HHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 45666554 33333 34444444555677889999999999875
No 138
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=59.50 E-value=3.4 Score=43.80 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|-...++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 34556774456788899999999864
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.36 E-value=4.1 Score=39.45 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.8
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999999874
No 140
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=59.35 E-value=3 Score=44.22 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 120 TTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 120 tQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|+++...+. ..+..| ..|+-||++|+|||+.+.
T Consensus 31 g~~~~~~~l~----~~l~~~--~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 31 GQKYMINRLL----IGICTG--GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp SCHHHHHHHH----HHHHHT--CCEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHHH----HHHHcC--CeEEEECCCCCcHHHHHH
Confidence 4555544333 333334 467889999999999875
No 141
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=58.84 E-value=1.2e+02 Score=28.26 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhH-HHHHH
Q 002808 623 NRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDS-RLQVQ 701 (878)
Q Consensus 623 N~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q 701 (878)
.+.|+.||...+.+...|+-++..++..+.+.-.. +-++. ..+.-
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K----------------------------------yE~E~~~r~~~ 67 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK----------------------------------LQEEMLQREEA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------------hHHHHHHHHHH
Confidence 34566666666666666666666666665441110 00111 12334
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNH 760 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~ 760 (878)
+.+|..||..+...+=.+..||.+-+-|.||-.|=|- +..+||.-|..|
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk----------~heeEl~eLq~q 116 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK----------LHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHSC
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 6789999999999999999999999999999988553 345677666544
No 142
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=58.64 E-value=22 Score=32.29 Aligned_cols=82 Identities=15% Similarity=0.224 Sum_probs=51.3
Q ss_pred HhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhhhc---ccCcccchhhhHHH
Q 002808 527 QKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIK-KLRDEIKGKNDQIALLEKQIADSIMT---SHNTMDNSEVSQSF 602 (878)
Q Consensus 527 lk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~-~l~~Ei~~k~~qi~~Le~~i~~s~~~---~~~k~~~~ev~qal 602 (878)
++.+...+.-+.+.++++..|-++.+|+.+++..|. .|+-.+.. |.++|.+...- ..-..|.++++-.|
T Consensus 8 ~~~li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~-------L~k~~~~l~~l~qkeRL~~dF~~l~~~f 80 (97)
T 1hs7_A 8 LSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTS-------VRDKIESNILIHQNGKLSADFKNLKTKY 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHH-------HHHHHHHSTHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH-------HHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 455667777778899999999999999998877777 66555544 34444311110 01112445555555
Q ss_pred HHHHHHhhhhhhh
Q 002808 603 AELAAQLNEKSFE 615 (878)
Q Consensus 603 ~eL~~q~~eKs~e 615 (878)
-.+.-+|++|--+
T Consensus 81 Q~~qr~y~ek~~e 93 (97)
T 1hs7_A 81 QSLQQSYNQRKSL 93 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6666667666443
No 143
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=58.61 E-value=3 Score=43.02 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHhhcCC--CcceeeecccCCCCccccc
Q 002808 133 VSGAMDGI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
+..++.|. ..+|+-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 34445553 2469999999999998854
No 144
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.21 E-value=77 Score=29.41 Aligned_cols=45 Identities=27% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 603 AELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 603 ~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
..|..|+..--.-|..|-.+...|++++.++... .++|..|++|.
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~----lE~I~vLkaQv 71 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV----METVPVLKAQA 71 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4555555544444445555555555555543222 24566666663
No 145
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=58.01 E-value=3.6 Score=44.41 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=17.8
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.| ++..++||||||.+.
T Consensus 69 ~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 69 KQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCCCchHHH
Confidence 34567776 677899999999774
No 146
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=57.98 E-value=6 Score=41.78 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCC-----CcceeeecccCCCCccccc
Q 002808 128 AAQHVVSGAMDGI-----NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 128 ~~~plV~~vl~Gy-----N~tIfAYGqTGSGKTyTM~ 159 (878)
+...++..++.|+ ...|+..|++|||||+...
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 4555566666543 2457889999999998763
No 147
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.73 E-value=12 Score=35.95 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhh--------hHHHHhhhHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFE--------LEVKAADNRIIQE 628 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~e--------lE~ksadN~~lqE 628 (878)
+..++.+|..++.+-+.+-...|+ ....+-+-|++|+..+=+-+-. -...-.-|+.|++
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~-------------~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ 110 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEE-------------EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTE 110 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHH-------------TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666665554443333333 3345556666666655333221 1222256778888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 002808 629 QLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 629 qL~~K~~e~~~lqeel~~Lk~ql 651 (878)
||..+-.-+..+|..+..||..+
T Consensus 111 ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 111 QLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp TTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888877654
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.67 E-value=7.3 Score=40.68 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=27.7
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhh--cCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAM--DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl--~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..||.+++.. .+... +..++..+. .+....|+-||++|+|||+...
T Consensus 9 ~~~~~~ig~~----~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 9 KTLDEYIGQE----RLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CSTTTCCSCH----HHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred ccHHHhhCHH----HHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHHH
Confidence 3567666543 33332 222333332 2355678889999999999874
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.96 E-value=5.9 Score=41.89 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=28.3
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhh--cCCCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAM--DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl--~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.||.+.+. ..+... +..++..+. .+....|+-||++|+|||+...
T Consensus 27 ~~~~iiG~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCSC----HHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCCh----HHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 56666653 444443 233344333 3445679999999999999874
No 150
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=55.47 E-value=4 Score=43.80 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.4
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.+ ++..++||||||.+.
T Consensus 53 ~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 53 PVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHhcCCC--EEEECCCCcHHHHHH
Confidence 34556766 677899999999764
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=55.28 E-value=4.3 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=17.4
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|....++-||++|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 4544458999999999999874
No 152
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=55.07 E-value=3.4 Score=42.92 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.0
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-||++|+|||++..
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 578999999999999874
No 153
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.94 E-value=4.4 Score=41.99 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=17.7
Q ss_pred HHhhcCCCcceeeecccCCCCccccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++.|.+ ++..++||||||.+..
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 34556765 5667899999998764
No 154
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=54.55 E-value=2.9 Score=48.12 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=29.4
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-HhhcCC----CcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI----NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.|.+.+..-..+.+. +..+-. .++..+ ...|+-||++|+|||+.+.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 46888888754433333322 211111 123322 2348999999999999874
No 155
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.43 E-value=24 Score=31.16 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~ 584 (878)
+.|-|+..|..+|.....+|..|+..|.+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667778888888888888888888854
No 156
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.42 E-value=21 Score=30.78 Aligned_cols=48 Identities=25% Similarity=0.181 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002808 602 FAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQ 649 (878)
Q Consensus 602 l~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ 649 (878)
+.+|-.-+.+|..|+-.|-.-.+.|..+|++|..++.+|+.++..++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444544555555555555555666667777777766666666665543
No 157
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=54.31 E-value=1.5e+02 Score=28.37 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 741 SAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 741 saaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
..-..+++.|..++..|+..|..|...+-..+
T Consensus 46 ~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 46 GRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888888888888776654443
No 158
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=54.15 E-value=5.7 Score=42.76 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=20.1
Q ss_pred HHhhcC---CCcceee--ecccCCCCccccc
Q 002808 134 SGAMDG---INGTIFA--YGVTSSGKTHTMH 159 (878)
Q Consensus 134 ~~vl~G---yN~tIfA--YGqTGSGKTyTM~ 159 (878)
..+..| -...++- ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 445555 4567888 9999999999974
No 159
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=54.09 E-value=4.4 Score=41.42 Aligned_cols=23 Identities=26% Similarity=0.026 Sum_probs=17.3
Q ss_pred HhhcCCCcceeeecccCCCCccccc
Q 002808 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.+.+ ++.+|+||+|||++..
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 3556654 6678999999999864
No 160
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=53.82 E-value=63 Score=29.70 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002808 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (878)
Q Consensus 519 ~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~ 587 (878)
.|..|.+-++.--..+--..|-|+.-.++...+||+-+. .=+.+=+.+.+.-++.|+.|.++|++.+.
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK-~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNK-STLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555444444444467777777889999999754 34566678888888889999999988765
No 161
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=53.31 E-value=5.4 Score=45.99 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.8
Q ss_pred hcCCCcceeeecccCCCCccccc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.|.+ |.-.|+||||||.||.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35665 6668999999999984
No 162
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.74 E-value=5 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.| ++..++||||||.+.
T Consensus 47 ~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHccCCC--EEEEcCCCCHHHHHH
Confidence 34567766 567899999999864
No 163
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=52.66 E-value=3.4 Score=47.31 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=29.5
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-HhhcC----CCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG----INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G----yN~tIfAYGqTGSGKTyTM~ 159 (878)
.++||.|.+.+..-+++.+.+ ..+-. ..+.+ ....|+-||++|+|||+.+.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 468888887654433333321 11110 11222 23458999999999999874
No 164
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=52.61 E-value=2.7e+02 Score=30.72 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
.|+++|..+...+.+++.++..||=-|-++-.
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 223 RLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 45555555555555555555555555544333
No 165
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=52.29 E-value=5.6 Score=45.79 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..+..|.+.++++ ++||||||+++.
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444445576655444 999999999974
No 166
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.16 E-value=3.7 Score=45.19 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=16.8
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
-...|.-.|+||||||.+|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34567889999999999985
No 167
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.10 E-value=30 Score=39.88 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
|...|..|+.+|+..-.+|++|+..|
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=50.58 E-value=8.6 Score=40.40 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.9
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999985
No 169
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=50.40 E-value=80 Score=30.59 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHH----HHhhHH-HHHHHHHHHHHHh------------hhhHHHHHhhhhhHHHHHHHHh
Q 002808 799 GSSLDLKRELALSREREVSYEA----ALLEKD-QQEAELQRKVEES------------KKREAYLENELANMWVLVAKLK 861 (878)
Q Consensus 799 ~~~~~~~~e~~~~~~re~~~e~----~l~ek~-~~e~el~~~~~e~------------k~~e~~len~lanmw~lvaklk 861 (878)
.+.+++++=|.|.-+|-.++|| .|++|- +.++-|++.+|+. .+=|++=||-=|.|-.|.-+||
T Consensus 43 ~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLk 122 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQ 122 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5789999999999999888887 456654 4455566666653 3446777899999999998887
No 170
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=50.08 E-value=5.5 Score=48.51 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++..+..+....++-||++|+|||+.+.
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 344444445555667889999999999885
No 171
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.81 E-value=6.5 Score=44.64 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=18.6
Q ss_pred HhhcCCCcceeeecccCCCCcccc
Q 002808 135 GAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
.++.|.+..++..++||||||++.
T Consensus 152 ~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 152 LLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHcCCCCCEEEECCCCccHHHHH
Confidence 456664566788999999999974
No 172
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=49.49 E-value=74 Score=35.26 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=50.0
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
+--+...|-|...||-+|+-+.+.-..+....+.+++.|..-+....+.+...++|+..
T Consensus 121 ~e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~ 179 (373)
T 3hhm_B 121 IEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQT 179 (373)
T ss_dssp -CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677888999999999999999999999999999999999999999999999744
No 173
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=49.22 E-value=1.6e+02 Score=27.01 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhHHHHHhhhHH
Q 002808 518 DQIDLLREQQKILAGEVALHSSA 540 (878)
Q Consensus 518 d~~dlL~eQlk~~~~Ei~~~ss~ 540 (878)
+|++|||+. +|+..+-.+
T Consensus 2 eHi~LLRK~-----aE~~KqL~~ 19 (107)
T 2no2_A 2 SHADLLRKN-----AEVTKQVSM 19 (107)
T ss_dssp HHHHHHHHH-----HHHHHHHHH
T ss_pred cHHHHHHHh-----hHHHHHHHH
Confidence 577888754 455544333
No 174
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.12 E-value=6 Score=43.01 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=18.0
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.| ++..++||||||.+.
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 344567765 678899999999854
No 175
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=48.99 E-value=6.1 Score=39.24 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHHHHhhcC-C--CcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDG-I--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~G-y--N~tIfAYGqTGSGKTyTM~ 159 (878)
+-++.++.| + ...+.-+|++|+|||..+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 456777743 3 3457779999999999874
No 176
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=48.95 E-value=6 Score=42.67 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.1
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-||++|+|||+...
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578889999999999864
No 177
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.45 E-value=1.6e+02 Score=26.77 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHH
Q 002808 558 QVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICEC 637 (878)
Q Consensus 558 q~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~ 637 (878)
..++.+|..++..-+.+-...|+.. ..+-+=|++|+..|=+-+-.. ++.. .-+.
T Consensus 25 ~~e~~~L~~~l~eE~~~R~~aE~~~-------------~~ie~ElEeLTasLFeEAN~M--Va~a-----------r~e~ 78 (97)
T 2eqb_B 25 DDEVKRLREDIAKENELRTKAEEEA-------------DKLNKEVEDLTASLFDEANNM--VADA-----------RKEK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH--HHHH-----------HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH--HHHH-----------HHHH
Confidence 3455556655555544444444433 445555566666543222211 1111 1234
Q ss_pred HhHHHHHHHHHHHHHH
Q 002808 638 EGLQETIGFLKQQLND 653 (878)
Q Consensus 638 ~~lqeel~~Lk~ql~~ 653 (878)
..++..+.+|+.||.+
T Consensus 79 ~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 79 YAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5566667777777654
No 178
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=48.36 E-value=6.4 Score=41.88 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+ ++..++||+|||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 445667766 566789999999875
No 179
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.35 E-value=9.4 Score=46.54 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=36.9
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHH-HhhcCCC----cceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGIN----GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~GyN----~tIfAYGqTGSGKTyTM~ 159 (878)
.+||.|-+-+..-+++.+.+.-|+.. .++.++. ..|+-||++|+|||+...
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 56777777666666777666666654 4566554 469999999999998764
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.01 E-value=5.4 Score=45.07 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=27.7
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+||.|++ |+.+... ...+...+-.|.-..|+-||++|+|||+...
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 3555544 4544421 1233333444555688999999999999874
No 181
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.64 E-value=1.5e+02 Score=28.96 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=30.9
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 615 ELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 615 elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
+++.|.+.+.+|++++....-++..++..+..|++.=..++
T Consensus 90 el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 90 VIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888887644433
No 182
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.37 E-value=1.1e+02 Score=28.73 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 746 ELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 746 elk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
+|++.++||.+|..+|.-|...++..+
T Consensus 86 ~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 86 KLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 678889999999999999988877666
No 183
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.34 E-value=2.4e+02 Score=28.49 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=4.4
Q ss_pred hhhhhhhhchhhhhhh
Q 002808 719 KEQLELRNQKLSEESS 734 (878)
Q Consensus 719 ~~~l~~~n~kl~ee~~ 734 (878)
|++|....|-|-+|.+
T Consensus 156 Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 156 KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555543
No 184
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=47.25 E-value=8.1 Score=39.64 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.3
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
..|+-.|++|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999875
No 185
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=47.03 E-value=11 Score=39.93 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...++-||++|+|||+++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSEEEEESCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4467899999999999874
No 186
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=46.82 E-value=6.3 Score=46.30 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=17.4
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|..++..-. ..+-.|++|||||+|+.
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHH
Confidence 444443322 34567999999999974
No 187
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=46.67 E-value=4.3 Score=42.07 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=15.5
Q ss_pred hhcCCCcceeeecccCCCCccccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++.|.++ +..++||+|||.+..
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHH
Confidence 3445443 338999999999864
No 188
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.57 E-value=76 Score=28.75 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 627 QEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 627 qEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
..+|.+-...+.-|+.++..|+..|..+
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888898888775
No 189
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.52 E-value=7.8 Score=40.12 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=16.9
Q ss_pred cCCCcceeeecccCCCCccccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|.-..++-||++|+|||+...
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4443348899999999999874
No 190
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=45.92 E-value=7.7 Score=44.10 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|-+..++..++||||||.+.
T Consensus 103 i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 103 IKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCCCccHHH
Confidence 44456555567888999999999873
No 191
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.83 E-value=23 Score=29.47 Aligned_cols=39 Identities=36% Similarity=0.479 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhh
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGL 739 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~l 739 (878)
.-.+++.|.+++..|..+|..|+.+...|-.|-.|=|+|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998887765
No 192
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=45.79 E-value=4.6 Score=42.97 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=17.8
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344566765 567799999999874
No 193
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.78 E-value=64 Score=29.66 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 630 LNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 630 L~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
+.+...+...+|.+|..||.||+++..
T Consensus 77 l~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678899999999999999998654
No 194
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=45.58 E-value=7.4 Score=43.11 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.+ +++.++||||||.+.
T Consensus 88 ~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 88 PVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEECCCCCCchHHH
Confidence 34567765 677889999999864
No 195
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=45.54 E-value=1.6e+02 Score=28.72 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHH
Q 002808 561 IKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECE 638 (878)
Q Consensus 561 ~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~ 638 (878)
.++|.+|++.- .-+.+.|+....+|.+-.-+.+++..+++.-.+.+++...++.
T Consensus 88 n~rL~~E~~dR------------------------~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 88 NGRLAAELEDR------------------------RQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788887775 3355556666677777777777766666655555554444433
No 196
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.49 E-value=7.1 Score=40.88 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|. ..++..++||||||.+.
T Consensus 38 ~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHhCCC-CCEEEECCCCChHHHHH
Confidence 3445563 24567899999999885
No 197
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.17 E-value=15 Score=29.68 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=23.6
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002808 745 VELKALSEEVAKLMNHKERLTAELAAAKS 773 (878)
Q Consensus 745 velk~l~~evtkl~~~n~~l~~el~~~~~ 773 (878)
.-+..|..++..|+.+|+||+.-|..+|.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~ 37 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQ 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888999999999999999888773
No 198
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=45.16 E-value=7.6 Score=37.99 Aligned_cols=29 Identities=24% Similarity=0.107 Sum_probs=20.0
Q ss_pred HHHHHhhc-CCC--cceeeecccCCCCccccc
Q 002808 131 HVVSGAMD-GIN--GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~-GyN--~tIfAYGqTGSGKTyTM~ 159 (878)
+.++.++. |+. ..+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 34566664 432 345668999999998874
No 199
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=45.01 E-value=8.1 Score=43.25 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhhHH
Q 002808 810 LSREREVSYEAALLEKDQ-QEAELQRKVEESKKREA 844 (878)
Q Consensus 810 ~~~~re~~~e~~l~ek~~-~e~el~~~~~e~k~~e~ 844 (878)
....++..++.++.+-.. -++++.++|.+...++.
T Consensus 516 ~~~~k~~~~~~~i~~i~~~~~~~~~~~i~~~q~~~~ 551 (556)
T 4a2p_A 516 CNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKER 551 (556)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 344556667777665443 47788888888766543
No 200
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=44.56 E-value=10 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=18.6
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
|..++.|.+ +++.++||+|||.+.
T Consensus 53 i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 53 INVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHcCCC--EEEEECCCChHHHHH
Confidence 345567877 677899999999874
No 201
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.84 E-value=7.9 Score=41.04 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.5
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999974
No 202
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=43.83 E-value=8.2 Score=37.66 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHhhc-CCC--cceeeecccCCCCccccc
Q 002808 131 HVVSGAMD-GIN--GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~-GyN--~tIfAYGqTGSGKTyTM~ 159 (878)
+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45677775 554 457889999999998874
No 203
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.68 E-value=9.8 Score=40.39 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.7
Q ss_pred CCCcceeeecccCCCCccccc
Q 002808 139 GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..+..|+-||++|+|||+...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHH
Confidence 456789999999999998763
No 204
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.38 E-value=46 Score=30.94 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=65.9
Q ss_pred HHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccc
Q 002808 705 IEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVR 784 (878)
Q Consensus 705 ~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~ 784 (878)
+-+|+.++.+|.=+.+.+....+...-| +....-.|-.|+++|...|..|..-+--.--.. -+.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N-----DDL- 68 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQ----------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN-----DDL- 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----hHH-
Confidence 4456666666666666666544433322 334566788999999999998876543211000 000
Q ss_pred cCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002808 785 NGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAEL 832 (878)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el 832 (878)
-|..+++ ..+++||-.=++..-+|-+-||.=|.||+.+..++
T Consensus 69 -ER~~R~t-----~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~~ 110 (111)
T 2v66_B 69 -ERAKRAT-----IVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV 110 (111)
T ss_dssp -HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0111111 12678888888888999999999999888887654
No 205
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=43.13 E-value=9 Score=42.69 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhhHH
Q 002808 812 REREVSYEAALLEKDQ-QEAELQRKVEESKKREA 844 (878)
Q Consensus 812 ~~re~~~e~~l~ek~~-~e~el~~~~~e~k~~e~ 844 (878)
..+|..++.++.+-+. -++++.++|.+-+..|.
T Consensus 517 ~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 550 (555)
T 3tbk_A 517 MIKEKIMNESILRLQTWDEMKFGKTVHRIQVNEK 550 (555)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 4445667777665544 37789999988866654
No 206
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=43.04 E-value=1e+02 Score=28.75 Aligned_cols=67 Identities=25% Similarity=0.281 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHh----------cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHH
Q 002808 538 SSALKRLSEEAA----------RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAA 607 (878)
Q Consensus 538 ss~lkrL~eqa~----------~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~ 607 (878)
+|.+-+...|+. ...|. ++.||.||+.+.+.. ++.-|..+.. =..|.-+-++|+-.
T Consensus 10 ~s~~nn~~~~~~~qp~~r~~~~~~sDP--L~~ELeRLr~~~d~~---~K~HE~kklq---------Lkse~e~E~ae~k~ 75 (115)
T 3vem_A 10 PSLLNNGTEQIAVQPVPQIPFPVFNDP--FLHELEKLRRESENS---KKTFEEKKSI---------LKAELERKMAEVQA 75 (115)
T ss_dssp -----------------------CCSH--HHHHHHHHHHHHHHH---HHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred cccccCCCccccCCCCCcCCCccccch--HHHHHHHHHHHHHHH---HHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 455555666651 23333 778999999887764 3333333211 13567777899999
Q ss_pred HhhhhhhhhHH
Q 002808 608 QLNEKSFELEV 618 (878)
Q Consensus 608 q~~eKs~elE~ 618 (878)
-||.|.+|+|.
T Consensus 76 KYD~~lqe~es 86 (115)
T 3vem_A 76 EFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 207
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=42.87 E-value=1.7e+02 Score=28.99 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=53.8
Q ss_pred chhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 595 NSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 595 ~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
+--|...|.++=.+|-.|+.+-+.-..+.-....+++.|..-+...-+.+...++|+..
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~ 70 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQT 70 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999843
No 208
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=42.76 E-value=1.3e+02 Score=26.36 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=42.8
Q ss_pred HhhhHHHHHhh-------hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002808 527 QKILAGEVALH-------SSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (878)
Q Consensus 527 lk~~~~Ei~~~-------ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~ 587 (878)
++.+-.||+.| .+-|+.=.++...+||+-+. .=+.+=+.+...-++.|+.|.+.|.+.+.
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK-~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNK-STLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555 55666666778999998754 33566677888888889999998887765
No 209
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=41.82 E-value=8.1 Score=45.29 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.1
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3568889999999999973
No 210
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=40.89 E-value=9.6 Score=41.23 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.3
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-||++|+|||++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4578999999999999874
No 211
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=40.75 E-value=14 Score=36.48 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=20.2
Q ss_pred HHHHHHHHhhc--CCCcceeeecccCCCCccccc
Q 002808 128 AAQHVVSGAMD--GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 128 ~~~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++..+++.+.. +-...|.-.|++|||||+.+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 33444454442 233455667999999999874
No 212
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.58 E-value=73 Score=29.67 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 002808 626 IQEQLNQKICECEGLQETIGFLKQ 649 (878)
Q Consensus 626 lqEqL~~K~~e~~~lqeel~~Lk~ 649 (878)
.+++|++.+-....+..++..|++
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555444444444444444433
No 213
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=40.46 E-value=13 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=17.3
Q ss_pred HHHhhcCCCcceeeecccCCCCccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHT 157 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyT 157 (878)
|..++.|. .++..|+||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 34556775 478899999999965
No 214
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=40.38 E-value=12 Score=45.32 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=37.5
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHH-HhhcC----CCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG----INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G----yN~tIfAYGqTGSGKTyTM~ 159 (878)
.+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|+|||+.+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 478899988877777777776666553 23332 23458899999999998874
No 215
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.37 E-value=1.7e+02 Score=25.72 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccccccccchhhhhhhhhhchhhH-HHHHH
Q 002808 623 NRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDS-RLQVQ 701 (878)
Q Consensus 623 N~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q 701 (878)
.+.|+.|+...+.+...++-++..++..+.+.-. .+-++. .-+.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~----------------------------------KyE~E~~~R~~~ 47 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE----------------------------------KLQEEMLQREEA 47 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHH
Confidence 4667888888888888888888877766544111 111122 23344
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKG 738 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~ 738 (878)
+.+|-.||..+..++=.|..||.+-.-|.||-.|=|-
T Consensus 48 E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 48 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999887653
No 216
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.34 E-value=14 Score=39.52 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.5
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||.|+.
T Consensus 102 vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 56678999999999984
No 217
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=40.34 E-value=35 Score=30.35 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchhhhHHHHHHHHHhh
Q 002808 562 KKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQSFAELAAQLN 610 (878)
Q Consensus 562 ~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~ 610 (878)
..|+.+|++.+.|+..|++.|..... .-...+-...++....+.-.||
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a-~L~~~~~~~~~~~hI~~Lh~YN 51 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA-KLKNRDAKQTVQKHIDLLHTYN 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHh
Confidence 34555555555555555555533211 1112234556666678888888
No 218
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=40.23 E-value=9.6 Score=42.27 Aligned_cols=23 Identities=26% Similarity=0.026 Sum_probs=17.1
Q ss_pred HhhcCCCcceeeecccCCCCccccc
Q 002808 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.|.+ ++..|+||+|||.+..
T Consensus 104 ~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHhcCC--EEEEeCCCCCHHHHHH
Confidence 4455544 6678999999999864
No 219
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.96 E-value=29 Score=35.04 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=24.4
Q ss_pred HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 620 AADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 620 sadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
..+|..|.+||..|..+++.|+++++.++.|.
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35777777888888888888877777777775
No 220
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=39.75 E-value=10 Score=40.83 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=18.0
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..++.| .++..++||+|||.++.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 3456677 45667999999999874
No 221
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=39.61 E-value=13 Score=44.07 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=31.1
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|.|.. |.|..+|..-+.. ++..+-.|... ....|.|||||||||-
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 44444 3788888877764 45555566432 4467999999999995
No 222
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=39.59 E-value=10 Score=44.18 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|..++.|.| ++..++||+|||.+..
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 344566766 5778999999998864
No 223
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=39.55 E-value=11 Score=38.09 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+++++-.|-- +.-.|+.|||||+.+.
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLAM 40 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHHH
Confidence 34555555543 4457999999999874
No 224
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=39.48 E-value=13 Score=41.74 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=25.1
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 118 TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 118 ~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..|..++..+.. .+..| .+.++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 4467777765432 22223 3478899999999999874
No 225
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.24 E-value=35 Score=29.05 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=31.9
Q ss_pred hhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 609 LNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 609 ~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
-.++.+.+-.|-...+.|+-.|++|..++.+|++.+..++.-|..
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~ 57 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPV 57 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344556677788888999999999999999999999999888753
No 226
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=39.16 E-value=11 Score=43.21 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHhhcCCCcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++..++.| ..|+-||++|+|||+...
T Consensus 34 l~~al~~~--~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSG--ESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHT--CEEEEECCSSSSHHHHHH
T ss_pred HHHHHhcC--CeeEeecCchHHHHHHHH
Confidence 33444455 467889999999999874
No 227
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=38.95 E-value=10 Score=37.14 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHhhc-CCC--cceeeecccCCCCccccc
Q 002808 131 HVVSGAMD-GIN--GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~-GyN--~tIfAYGqTGSGKTyTM~ 159 (878)
+-++.++. |+. ..+.-+|++|||||..+.
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHH
Confidence 45566663 442 356678999999999874
No 228
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.78 E-value=7.8 Score=35.89 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|.+|||||+...
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998653
No 229
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=38.77 E-value=7.2 Score=37.53 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.4
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.+.-.|++|||||+.+.
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45668999999999986
No 230
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=38.15 E-value=3.1e+02 Score=27.20 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhc--------
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT-------- 588 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~-------- 588 (878)
.|.++.+-.+|+....+....+.--.+|.+. +.+...||.....=|++-.+=|++.|.++. .++.
T Consensus 9 ~~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~------y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~-~qer~~~~~~~~ 81 (170)
T 3l4q_C 9 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEE------YTRTSQELQMKRTAIEAFNETIKIFEEQGQ-TQEKSSKEYLER 81 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSSTTGGGSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH
Confidence 5678888888888777766666555444433 333344444444444444566677777662 2211
Q ss_pred ---ccCcccchhhhHH-------HHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 589 ---SHNTMDNSEVSQS-------FAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 589 ---~~~k~~~~ev~qa-------l~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
.-...+..-+... |.+|-....+=..+++...++|+.|..++|...-++.+|...-.++..-|
T Consensus 82 f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL 154 (170)
T 3l4q_C 82 FRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWL 154 (170)
T ss_dssp SSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 1111122222222 23333333333467888889999999999988888888766555554444
No 231
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.90 E-value=39 Score=27.26 Aligned_cols=40 Identities=38% Similarity=0.426 Sum_probs=30.7
Q ss_pred hHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHh
Q 002808 712 VTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLM 758 (878)
Q Consensus 712 ~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~ 758 (878)
.-+|.....+|-.+|.||++-- ..|-.||..|.+||.+|.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L-------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETL-------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 3356667788888999998643 356679999999999884
No 232
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=37.85 E-value=10 Score=42.39 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=19.0
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..++.|.+. ++..|+||||||.+.
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 4556778654 567899999999973
No 233
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=37.80 E-value=1.4e+02 Score=27.77 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhccc
Q 002808 537 HSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH 590 (878)
Q Consensus 537 ~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~ 590 (878)
..+-|+.-.++...+||+-+. .=+.+=+.+...-++.|+.|.++|.+.+.+.+
T Consensus 41 ArQKLkdA~~~~e~DPDevNK-~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k 93 (113)
T 4fi5_A 41 ARQKVRDAEKQYEKDPDELNK-RTLTDREGVAVSIQAKIDELKRQLADRIATGK 93 (113)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356667777779999999764 34666678888889999999999998887543
No 234
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=37.76 E-value=12 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=19.1
Q ss_pred HHHhhcCCCcceeeecccCCCCcccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
|..++.|-+.-+++.++||||||.+.
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 44456554556788999999999874
No 235
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=37.75 E-value=11 Score=44.21 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.0
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++..|++|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 456779999999999974
No 236
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=37.07 E-value=10 Score=43.98 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.8
Q ss_pred CCCcceeeecccCCCCccccc
Q 002808 139 GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 346778899999999999985
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.02 E-value=18 Score=43.29 Aligned_cols=29 Identities=17% Similarity=0.136 Sum_probs=21.1
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..+..+....|+-||++|+|||....
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 34444444566668899999999999874
No 238
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=36.99 E-value=1.5e+02 Score=26.84 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhc
Q 002808 538 SSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT 588 (878)
Q Consensus 538 ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~ 588 (878)
.|-|+.-.++...+||.-+. .=+.+=+.+...-++.|+.|.++|.+.+..
T Consensus 25 ~QKLkdA~~~~e~DPDevNk-~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 25 RQKLKDAERAVELDPDDVNK-STLQSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp HHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666667778999998754 345666788888888899999999887764
No 239
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=36.91 E-value=15 Score=36.03 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=14.9
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-.|.+|||||+.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467778999999999864
No 240
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=36.63 E-value=13 Score=43.46 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=17.4
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.| ++..++||||||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 34566766 567889999999864
No 241
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.47 E-value=8.5 Score=42.03 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.5
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
.-++..|+||||||++|.
T Consensus 36 ~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 445667999999999984
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=36.22 E-value=17 Score=39.30 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=14.8
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-.|++|||||.|+.
T Consensus 130 ~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356668999999999984
No 243
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.13 E-value=39 Score=28.19 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~ 652 (878)
.-...|+.++.+...++..|..++..|+++|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777778889999999999998874
No 244
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.93 E-value=2.7e+02 Score=25.91 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.......++.+.......-|+.++..|+.||.+
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666667777888889999998876
No 245
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=35.73 E-value=11 Score=37.26 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=18.6
Q ss_pred HHHhhc-CC--CcceeeecccCCCCccccc
Q 002808 133 VSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
++.++. |+ ...+.-+|++|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 455543 33 3456779999999999853
No 246
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.25 E-value=1.2e+02 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 629 QLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 629 qL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
-+.....+...+|.+|..||.||+++..
T Consensus 46 ~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 46 TLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556778899999999999999998654
No 247
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=35.21 E-value=18 Score=43.15 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.2
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-||++|+|||++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999863
No 248
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=35.12 E-value=1.2e+02 Score=24.36 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=42.9
Q ss_pred HhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 608 QLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 608 q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
-|||=...+|.--+||--|.-+|..-++.+.-|+.|-..+|+.|-++
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 47888888999999999999999999999999999999999988664
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=34.97 E-value=11 Score=37.50 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.6
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-.|++|||||.++.
T Consensus 9 ~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred cEEEEECcCCCCHHHHHH
Confidence 346668999999999874
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=34.88 E-value=9 Score=37.09 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.7
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVR 25 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 45557999999999874
No 251
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.82 E-value=9.2 Score=43.00 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.2
Q ss_pred hhcCCCcceeeecccCCCCcccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
++.|++..|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999876
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=34.66 E-value=16 Score=43.46 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=21.1
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..+.......++-||++|+|||+.+.
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 34444444555667889999999999875
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=34.57 E-value=9.7 Score=36.92 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=13.7
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||+++.
T Consensus 3 ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34557999999999874
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.51 E-value=20 Score=43.54 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.9
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
+.|+-||++|+|||++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 578999999999999863
No 255
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=33.92 E-value=17 Score=44.13 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+..++-.|....++..|+||||||....
T Consensus 379 ~I~~~l~~~~~~~~Ll~a~TGSGKTlval 407 (780)
T 1gm5_A 379 EIRNDMISEKPMNRLLQGDVGSGKTVVAQ 407 (780)
T ss_dssp HHHHHHHSSSCCCCEEECCSSSSHHHHHH
T ss_pred HHHhhccccCCCcEEEEcCCCCCHHHHHH
Confidence 33444445555678889999999998764
No 256
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=33.87 E-value=9.4 Score=39.68 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=16.3
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 568999999999999986
No 257
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=33.86 E-value=9.1 Score=42.30 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.0
Q ss_pred CcceeeecccCCCCcccc
Q 002808 141 NGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM 158 (878)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 567788999999999997
No 258
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.81 E-value=15 Score=41.90 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.4
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578889999999999975
No 259
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=33.62 E-value=21 Score=39.31 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.6
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||+|+.
T Consensus 159 vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 56678999999999984
No 260
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.34 E-value=26 Score=29.24 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=24.5
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhcCCc
Q 002808 746 ELKALSEEVAKLMNHKERLTAELAAAKSSP 775 (878)
Q Consensus 746 elk~l~~evtkl~~~n~~l~~el~~~~~~~ 775 (878)
.+..|..+|..|..+|+.|.+++...+...
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999998887654
No 261
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.07 E-value=43 Score=29.60 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHH
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAA 743 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaa 743 (878)
-.|+++|..++..+.++-..|...|+-|.+=|..|+-||+..
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999988888888888754
No 262
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.89 E-value=85 Score=28.58 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=34.8
Q ss_pred HHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002808 707 ELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 772 (878)
Q Consensus 707 ~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~ 772 (878)
+|-.++.++.+++..|...+. .. .+-+..|+.||-+|.-+|.+|-.|=..-+
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~----------~~----~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESK----------RL----DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------cc----hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555554422 21 46678899999999999999987766544
No 263
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=32.76 E-value=51 Score=35.56 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=47.9
Q ss_pred ccchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 593 MDNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 593 ~~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
.++.-|.+.|.++-.+|-.|+.+-+.-..+.-.+..+|+.|...+....+.+...++|+..
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~ 71 (302)
T 2y3a_B 11 DSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQT 71 (302)
T ss_dssp ----------CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999999999999999999999999999999999999999999999854
No 264
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.75 E-value=2.7e+02 Score=24.83 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 622 DNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 622 dN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
+...+.++|.........+..++..|+..+..
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666654
No 265
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=32.65 E-value=9.8 Score=40.44 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=17.4
Q ss_pred hhcCCCcceeeecccCCCCccccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
++.|++..|...|++|+|||..|.
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl~ 36 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLIN 36 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHHH
Confidence 678999999999999999998773
No 266
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=32.59 E-value=11 Score=35.43 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.9
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.|+-.|.+|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788999999999865
No 267
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=32.29 E-value=10 Score=36.57 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.0
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||..+.
T Consensus 7 ~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45667999999999874
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=32.12 E-value=10 Score=36.33 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.8
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-.|++|||||+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356778999999999874
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=31.91 E-value=17 Score=38.62 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=14.8
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999985
No 270
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=31.75 E-value=4.8e+02 Score=27.45 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHhhhHHHH
Q 002808 516 TIDQIDLLREQQKILAGEV 534 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei 534 (878)
+..+|..++++|.=..+|+
T Consensus 42 l~~~le~lr~~L~Py~~el 60 (273)
T 3s84_A 42 IGDNLRELQQRLEPYADQL 60 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777777777666665
No 271
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.71 E-value=57 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLK 648 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk 648 (878)
.+|+.|.-.|.+|..++..|.++...|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4677777777777777777766666655
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=31.35 E-value=12 Score=35.74 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.2
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|.+|||||+.-.
T Consensus 7 ~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999998753
No 273
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.31 E-value=2e+02 Score=23.02 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHH
Q 002808 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIA 576 (878)
Q Consensus 516 ~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~ 576 (878)
..++...+.+.+.+..+++....+.++.++.. ..++-..++...++|..++.||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~------~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAKEK------INEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888776666555444 12233345555555555544443
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=31.18 E-value=11 Score=37.13 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.2
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||.+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45668999999999984
No 275
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.15 E-value=91 Score=25.44 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 623 NRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 623 N~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
...|+++......++.+|+.+|..|+.++..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666665555544
No 276
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=31.08 E-value=3.2e+02 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 630 LNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 630 L~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
..+|...|.-|..+|.++|+++.+
T Consensus 111 y~ekK~Rc~yL~~KLsHIK~lI~~ 134 (140)
T 1xaw_A 111 YKSKKNHCKQLKSKLSHIKKMVGD 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667999999999999999865
No 277
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.03 E-value=1.7e+02 Score=27.32 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHH
Q 002808 800 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 860 (878)
Q Consensus 800 ~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvakl 860 (878)
.+..|..|+..-+-.-++||++|.+-++ .+...+.....+=..||.+|+.+|.=.+..
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888899999988655 345555666777788999999988765543
No 278
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=31.00 E-value=10 Score=39.71 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.3
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
|+-+|...|++|+|||..|-
T Consensus 1 f~f~v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVN 20 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHH
Confidence 35577888999999998873
No 279
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=31.00 E-value=13 Score=41.65 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=13.6
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
++..|+||||||.+..
T Consensus 131 ~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 131 RILNLPTSAGRSLIQA 146 (510)
T ss_dssp EEEECCSTTTHHHHHH
T ss_pred cEEEeCCCCCHHHHHH
Confidence 5678999999999964
No 280
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=30.97 E-value=5.1e+02 Score=27.56 Aligned_cols=251 Identities=10% Similarity=0.107 Sum_probs=123.0
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEEeccccCCCC-cchhHHHHHHHHHHHHhh-cCC
Q 002808 63 PSSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTT-TTRHVYDIAAQHVVSGAM-DGI 140 (878)
Q Consensus 63 ~~~~~~IkV~VRVRPl~~~E~~~g~~~~~~~d~~~i~~~~~~~~~~F~FD~VF~~~a-tQeeVY~~~~~plV~~vl-~Gy 140 (878)
.+-+|.||.+.=+-+-. .+....+.-...+|.- ......|.|++|.+..- +-+++|..-.+.-++-++ .+.
T Consensus 9 dElkG~iRcFAYi~e~~-----l~~~~~IdY~~~tI~~--~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~DmCL~k~~ 81 (275)
T 4gkp_A 9 TELKGCARLFANIIEDE-----ISEKLIVNYSDESIED--MKNHKTYKFTKLIQNFSHQNKDLFKEDLHVYIDFCLKRRE 81 (275)
T ss_dssp -------CEEEEEETTT-----SCTTEEEETTTTEEEE--TTTTEEEECSEEEEECSSSCCCGGGTHHHHHHHHHHHTTC
T ss_pred HHhcCcEEEEEEEcccc-----CCccEEEecccceecc--CCCccEEEEEeeeccccCCHHHHHHHHHHHHHHHHhccCC
Confidence 35578888887764321 1222222222233432 33457899999996443 345566666677777777 799
Q ss_pred CcceeeecccCCCCccccc------CCCceeEEEEEeeeeeccee-eecCCCCC-----CCcceeecCCCeEecccEEEE
Q 002808 141 NGTIFAYGVTSSGKTHTMH------TPNREFLLRVSYLEIYNEVV-NDLLNPAG-----QNLRIREDSQGTFVEGVKEEV 208 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~------g~~~ef~V~vS~lEIYnE~I-~DLL~p~~-----~~L~Ired~~G~~V~gLse~~ 208 (878)
|+.||..++.--+....-+ .....|.+.+-|+=+-.+.. .|||.... ..+.++-+.+.+-+.. +.+.
T Consensus 82 NfnlISiS~~~~~~lr~~ll~f~~~~y~~~y~itlQ~V~Ls~~~~S~Dll~~~~~~~~d~eI~Lk~e~~sI~ldS-~~i~ 160 (275)
T 4gkp_A 82 NFNLFSVGSSNIPNTFEKLLAFFKNNYFDKFVITLQYVMLSDNADSQDLLSNNKDGGKDVEIKLKIEESTISLGS-TLIT 160 (275)
T ss_dssp CEEEEEECCSSCCSHHHHHHHHHHHHTTTTEEEEEEEEEEC----CEETTCC----------CEEECSSCEEECS-CCEE
T ss_pred CceEEEecCCCcHHHHHHHHHHHHHhccccceEEEEEEEecCCCcccccccCCccccCCcceeEEeecceeeecc-eEEE
Confidence 9999999987755433221 44567888888887776554 58884322 1233333332222211 1122
Q ss_pred ecCHHHHHHHHHHhhhccccccccCCCCCCCceEEEEEEEEecCCCCCCCCceeeeeeeeEeecCCCCCccccccchhhh
Q 002808 209 VLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSKAETTGVRRK 288 (878)
Q Consensus 209 V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~~SkL~LVDLAGSEr~kt~~~G~rlk 288 (878)
+.+..+... ..-..-+......-.|+.+.+.... +.. ...-.++||.+-+..
T Consensus 161 i~~~~~~~~----------~~~~~~~~~~~~Gi~IlKfq~~~~~--~~e----~~pidfYFiei~~~~------------ 212 (275)
T 4gkp_A 161 LDEITDKLQ----------IKKKYSQLNHQNGIGLSKFQFFCLQ--DIE----PIPIDFYFIEIYQPS------------ 212 (275)
T ss_dssp GGGCCSCC------------CCSCC-----CCEEEEEEEEEETT--CSS----CCCEEEEEEEECCGG------------
T ss_pred eccCccccc----------hhhhccCCCCCCCceEEEEEEEecc--CCC----CCceeEEEEEecCHH------------
Confidence 221111000 0000001111122336566655331 111 111257888887643
Q ss_pred hhhhccccHHHHHHHHHHhhcCCCCCccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHhcccccc
Q 002808 289 EGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEIL 368 (878)
Q Consensus 289 E~~~INkSL~aLg~VI~aLs~~k~~hIPYRdSKLTrLLqdsLGGnskT~mIa~ISPs~~~~eETLsTLrFAsRak~Ikn~ 368 (878)
...+|.++++ .+. +-.|+++-+|+--| ...+.+++.++.-.. +.-..|..+.+..+++|.
T Consensus 213 -------t~~~L~~~~s---~~~-----~~~spi~~iLk~LL-~~TKS~flfni~~~~----n~~~lL~ls~~l~~~~~~ 272 (275)
T 4gkp_A 213 -------IYPILKRSTG---TES-----NLNSPLEIVLKKIF-HDTKSAFVFQIDHSA----EVYDILKLSSHLSFIRNP 272 (275)
T ss_dssp -------GHHHHHHC----------------CHHHHHHHHHH-HHSBCCEEEEESSCT----THHHHHHHHHHHTTCCCC
T ss_pred -------HHHHHHhccC---CCC-----CCCCcHHHHHHHHH-hcCcceEEEEccCcc----hHHHHHHHHHHhccccCc
Confidence 1223333321 111 11277887887666 567889999997553 334678889998888765
Q ss_pred c
Q 002808 369 A 369 (878)
Q Consensus 369 ~ 369 (878)
.
T Consensus 273 k 273 (275)
T 4gkp_A 273 K 273 (275)
T ss_dssp C
T ss_pred C
Confidence 3
No 281
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=30.95 E-value=17 Score=42.48 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.9
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
+..++-.|+.|||||+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3567779999999999984
No 282
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=30.75 E-value=20 Score=42.60 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.8
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
+.|+-||++|+|||++..
T Consensus 489 ~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 478999999999999864
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=30.46 E-value=36 Score=36.15 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=14.1
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999999985
No 284
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.44 E-value=94 Score=31.39 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 626 IQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 626 lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
+++||..--.....|+.++..|.+||
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555554
No 285
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.36 E-value=2.3e+02 Score=32.84 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=6.0
Q ss_pred HHHHHHhhhHHHHH
Q 002808 522 LLREQQKILAGEVA 535 (878)
Q Consensus 522 lL~eQlk~~~~Ei~ 535 (878)
+|-+|=+++..=|+
T Consensus 54 lLdkqErDltkrIN 67 (562)
T 3ghg_A 54 LIDEVNQDFTNRIN 67 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHH
Confidence 34444444444444
No 286
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.16 E-value=2.1e+02 Score=22.84 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=28.6
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002808 615 ELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 615 elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~ 652 (878)
.+..+......++..+++-...++...++|..++.|+.
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677778888888888888888888888764
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=29.99 E-value=13 Score=35.44 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.1
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+..|.+|||||+...
T Consensus 12 ~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHH
Confidence 357889999999999864
No 288
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.98 E-value=2.4e+02 Score=24.75 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=50.5
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccccccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q 002808 746 ELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEK 825 (878)
Q Consensus 746 elk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek 825 (878)
|+..|-..|-.|...|++|..|+..++. .++++|. +|+ .-+.-+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~--------------------------~~edfk~----KyE------~E~~~R 44 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAE--------------------------DIMRLRE----KLQ------EEMLQR 44 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHH----HHH------HHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHH--------------------------HHHHHHH----HHH------HHHHHH
Confidence 5678888899999999999999886663 2333332 222 222223
Q ss_pred HHHHHH---HHHHHHHhhhhHHHHHhhhhhHHHHHHHHhh
Q 002808 826 DQQEAE---LQRKVEESKKREAYLENELANMWVLVAKLKK 862 (878)
Q Consensus 826 ~~~e~e---l~~~~~e~k~~e~~len~lanmw~lvaklkk 862 (878)
...|++ |+|-+|++----.+||..+.++===++=|||
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333 5667777777777777777666554555554
No 289
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=29.96 E-value=19 Score=43.23 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhhHH
Q 002808 811 SREREVSYEAALLEKDQ-QEAELQRKVEESKKREA 844 (878)
Q Consensus 811 ~~~re~~~e~~l~ek~~-~e~el~~~~~e~k~~e~ 844 (878)
...|+..++.++.+-.. -++++.++|.+....+.
T Consensus 758 ~~~ke~~~~~~i~~l~~~~~~~~~~~i~~lq~~~~ 792 (797)
T 4a2q_A 758 NRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKER 792 (797)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34455666666655332 36789999988766543
No 290
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.88 E-value=13 Score=35.14 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.1
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-.|.+|||||+...
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368889999999998764
No 291
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=29.80 E-value=12 Score=36.62 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.4
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
+.-.|++|||||+.+.
T Consensus 3 i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4558999999999874
No 292
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.73 E-value=17 Score=44.13 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.0
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++..|++|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 346779999999999974
No 293
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.72 E-value=4.9e+02 Score=28.83 Aligned_cols=60 Identities=18% Similarity=0.071 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHhhhhhhhhH----HHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 596 SEVSQSFAELAAQLNEKSFELE----VKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE----~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
......+.+...+|.+...++| ...+|..+.+++.++...+.+.++.++..+..++..+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 3444444555555554443333 44577777777777777777777777777777776644
No 294
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.68 E-value=40 Score=29.85 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKG 738 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~ 738 (878)
-.|+++|.+++..|.|+...|...|+.|.+=+..++-
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3488899999999999888888888766544444433
No 295
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=29.67 E-value=14 Score=39.47 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=14.7
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-.|++|||||.++.
T Consensus 103 ~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 355567999999999985
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=29.19 E-value=13 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.1
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||+.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999998874
No 297
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.19 E-value=3.5e+02 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 557 LQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 557 iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
+...|..|+.||+.-+.|.+.||..|
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44457777788888777788888877
No 298
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=29.14 E-value=18 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.1
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++..|++|||||+|+.
T Consensus 372 ~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 456779999999999974
No 299
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=29.13 E-value=13 Score=36.86 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=13.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.+.-+|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999999874
No 300
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.01 E-value=1.2e+02 Score=26.98 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHH
Q 002808 560 EIKKLRDEIKGKNDQIALLEK 580 (878)
Q Consensus 560 e~~~l~~Ei~~k~~qi~~Le~ 580 (878)
+|.+|+.+|+.-+..|+.|++
T Consensus 59 ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 59 EIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444443
No 301
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=28.95 E-value=15 Score=43.06 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.5
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46788889999999999985
No 302
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.81 E-value=24 Score=37.46 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhh--cCCCcceeeecccCCCCccccc
Q 002808 123 HVYDIAAQHVVSGAM--DGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 123 eVY~~~~~plV~~vl--~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.+++.++..+..... .+-...|.-.|++|||||+.+.
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHH
Confidence 345544444443222 2333456678999999999873
No 303
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.72 E-value=3.5e+02 Score=24.94 Aligned_cols=31 Identities=6% Similarity=0.163 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
.|...|.-.+..-+-...+|+..|..|++.|
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666666655
No 304
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=28.64 E-value=20 Score=44.22 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=18.0
Q ss_pred HHhhcCCCcceeeecccCCCCccccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..++.|.| ++..++||||||.+..
T Consensus 258 ~~il~g~~--~ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 258 QPAINGKN--ALICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHcCCC--EEEEeCCCchHHHHHH
Confidence 34467866 5667899999998854
No 305
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=28.63 E-value=22 Score=36.88 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=16.1
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-||+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 678889999999999875
No 306
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.53 E-value=2e+02 Score=26.71 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHH
Q 002808 801 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 860 (878)
Q Consensus 801 ~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~lanmw~lvakl 860 (878)
+..|..|+..-+-.-++||++|.+-+++ +...+.....+=..||.+|+.++.=.+..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777777777778999999876543 44455666666778999998887655543
No 307
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.24 E-value=1.1e+02 Score=26.34 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=18.8
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 616 LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 616 lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
|+.|..+.+...+.+..+..++.+..++|..|+.+|
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555554
No 308
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=28.23 E-value=26 Score=42.01 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||..+ ......+ -.+.|.||+.-|.+|||||.+.
T Consensus 76 HifaiA-~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALA-NDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHH-HHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHH-HHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 566533 2233333 4799999999999999999885
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=28.15 E-value=16 Score=36.51 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=9.6
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||.++.
T Consensus 29 ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp EEEEECSCC----CHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34557999999999874
No 310
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.12 E-value=2.5e+02 Score=31.17 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 002808 700 VQAAEIEELN 709 (878)
Q Consensus 700 ~q~~e~e~lk 709 (878)
-+.+||++||
T Consensus 461 ~~~~~~~~~~ 470 (471)
T 3mq9_A 461 DASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3455555554
No 311
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=28.08 E-value=13 Score=42.63 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=18.2
Q ss_pred HHHhhcCCCcceeeecccCCCCccccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
|..++.|.+ ++..++||+|||.+..
T Consensus 34 i~~il~g~d--~lv~apTGsGKTl~~~ 58 (523)
T 1oyw_A 34 IDTVLSGRD--CLVVMPTGGGKSLCYQ 58 (523)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCcHHHHHHH
Confidence 345567876 4567899999998654
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=27.99 E-value=14 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.0
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||+++.
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 45667999999999874
No 313
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.92 E-value=26 Score=40.50 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=14.4
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||.++.
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 46678999999999984
No 314
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=27.89 E-value=20 Score=39.92 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=13.9
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999984
No 315
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=27.41 E-value=15 Score=40.16 Aligned_cols=21 Identities=38% Similarity=0.271 Sum_probs=15.4
Q ss_pred hcCCCcceeeecccCCCCccccc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.|.+ |.-.|+||||||+++.
T Consensus 173 ~~G~~--i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERV--IVVAGETGSGKTTLMK 193 (361)
T ss_dssp HTTCC--EEEEESSSSCHHHHHH
T ss_pred hcCCE--EEEECCCCCCHHHHHH
Confidence 35654 4445999999999984
No 316
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.41 E-value=70 Score=27.22 Aligned_cols=39 Identities=33% Similarity=0.415 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002808 800 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEE 838 (878)
Q Consensus 800 ~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e 838 (878)
..+++...++.+.+|=..||+.|-+|+..=++|+..++.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999988764
No 317
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.33 E-value=3.8e+02 Score=24.86 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002808 558 QVEIKKLRDEIKGKNDQIALLEKQIA 583 (878)
Q Consensus 558 q~e~~~l~~Ei~~k~~qi~~Le~~i~ 583 (878)
...|..|+.||+.-+.|...||..|.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34567778888888888888888773
No 318
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.21 E-value=64 Score=23.99 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 002808 560 EIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 560 e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
+....+.+|++-|.|.+.||.+|
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHH
Confidence 45677888999999999999887
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=27.06 E-value=15 Score=39.69 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=15.8
Q ss_pred hcCCCcceeeecccCCCCccccc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
-.|. .+.-.|+||||||.++.
T Consensus 169 ~~g~--~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 169 AIGK--NVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHTC--CEEEEESTTSCHHHHHH
T ss_pred cCCC--EEEEECCCCCCHHHHHH
Confidence 3565 45557999999999874
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=27.04 E-value=16 Score=34.66 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.4
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|..|||||+...
T Consensus 5 ~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999998753
No 321
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=26.92 E-value=21 Score=39.97 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=13.5
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4677899999999983
No 322
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=26.90 E-value=6.1e+02 Score=27.12 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHH---HhhhhhcccCcc
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQ---IADSIMTSHNTM 593 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~---i~~s~~~~~~k~ 593 (878)
..+-|+||+.+.....||..+.+. +..-..=++--++||+..|+. +++++.......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~k~~a--------------------~~af~~~~~~f~~q~~~qe~~~~~~~~~~~~~~~~~ 90 (302)
T 2y3a_B 31 SREYDQLYEEYTRTSQELQMKRTA--------------------IEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEK 90 (302)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHTCCC------CTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCHH
Confidence 446677888888777777743332 223333445566777777764 233344433333
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
+..-+....+.|... ...|-. -...+.++|..+..+...++.++..++--+-.+-.
T Consensus 91 e~~~~~~n~e~l~~r----l~aL~~---~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k 146 (302)
T 2y3a_B 91 EMQRILLNSERLKSR----IAEIHE---SRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRK 146 (302)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH----HHHHHh---hhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhh
Confidence 333333332222111 111111 12345666666666666666655555555544443
No 323
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=26.71 E-value=38 Score=38.28 Aligned_cols=18 Identities=44% Similarity=0.418 Sum_probs=14.8
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+..|++|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456667999999999974
No 324
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=26.69 E-value=29 Score=42.14 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||.. +......+ -.+.|.||+..|.+|||||.+.
T Consensus 154 Hifai-A~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 154 HIFAI-SDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred cHHHH-HHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 46653 23333333 3699999999999999999885
No 325
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=26.68 E-value=15 Score=34.96 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.6
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5567899999999876
No 326
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.66 E-value=96 Score=25.03 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
.|.+.|+-++.+...++..|.+++..|+.+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666665
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=26.49 E-value=17 Score=34.21 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.4
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|+.|||||+...
T Consensus 6 ~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57789999999998863
No 328
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=26.42 E-value=14 Score=36.20 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.7
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46779999999999984
No 329
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.35 E-value=1e+02 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
+|.+...+...++.+|+.+|..||.-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666667788889999999999865
No 330
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.24 E-value=1.2e+02 Score=24.91 Aligned_cols=30 Identities=23% Similarity=0.177 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 624 RIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 624 ~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
..|+++......++..|+.+|..|++++..
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555554443
No 331
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=26.13 E-value=17 Score=43.04 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=16.0
Q ss_pred hhcCCCcceeeecccCCCCcccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
+..|. .++..|+||||||...
T Consensus 36 ~~~~~--~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGK--NALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTC--EEEEECCGGGCHHHHH
T ss_pred hcCCC--cEEEEcCCccHHHHHH
Confidence 34554 4788899999999775
No 332
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=26.09 E-value=30 Score=42.10 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||..+ ......+ -.+.|.||+.-|.+|||||.+.
T Consensus 122 HifaiA-~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFAIA-DKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHH-HHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 466533 3333333 3699999999999999999875
No 333
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=26.08 E-value=17 Score=35.51 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.5
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|.+|||||+...
T Consensus 27 ~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 57889999999998763
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=25.77 E-value=20 Score=35.04 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.0
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-.|++|||||+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3456778999999998763
No 335
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=25.74 E-value=34 Score=43.20 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=20.2
Q ss_pred HHHHHhhcCCCcceeeecccCCCCcccc
Q 002808 131 HVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
.++.++-.|...-++.+|+||||||.+.
T Consensus 614 ~il~~~~~g~p~d~ll~~~TGsGKT~va 641 (1151)
T 2eyq_A 614 AVLSDMCQPLAMDRLVCGDVGFGKTEVA 641 (1151)
T ss_dssp HHHHHHHSSSCCEEEEECCCCTTTHHHH
T ss_pred HHHHHHhcCCcCcEEEECCCCCCHHHHH
Confidence 3344444577667889999999999763
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.73 E-value=16 Score=36.03 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=13.6
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
++.-.|++|||||.++.
T Consensus 22 i~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34456999999999874
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=25.67 E-value=16 Score=36.94 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.0
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-.|+.|||||+.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467788999999998864
No 338
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.66 E-value=3.6e+02 Score=26.36 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 002808 561 IKKLRDEIKGKNDQIALLE 579 (878)
Q Consensus 561 ~~~l~~Ei~~k~~qi~~Le 579 (878)
|..|+.|+...+..|+.|+
T Consensus 70 I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333
No 339
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.62 E-value=2.5e+02 Score=24.16 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002808 626 IQEQLNQKICECEGLQETIGFLKQQLNDA 654 (878)
Q Consensus 626 lqEqL~~K~~e~~~lqeel~~Lk~ql~~~ 654 (878)
+..+|+..-.++..|++.|..|+++|.+.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555555567777888888888888763
No 340
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=25.55 E-value=29 Score=43.34 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||..+ ......+ -.+.|.||+.-|.+|||||.+.
T Consensus 154 HifaiA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 154 HIFAIS-DVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred cHHHHH-HHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 566533 3333333 3699999999999999999885
No 341
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=25.43 E-value=22 Score=39.65 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=15.9
Q ss_pred hhcCCCcceeeecccCCCCcccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
++.|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345554 567899999999984
No 342
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=25.41 E-value=19 Score=37.42 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=16.3
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-||+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 588999999999999885
No 343
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=25.39 E-value=18 Score=33.69 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=14.0
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|..|||||+...
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999998764
No 344
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.39 E-value=99 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002808 616 LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 655 (878)
Q Consensus 616 lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~ 655 (878)
|+.-=.+|+.|.+++.+|..++..|+++...|++-+.++-
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444578999999999999999999999888888776644
No 345
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.36 E-value=27 Score=32.63 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHhhc-CCCcceeeecccCCCCccccc
Q 002808 131 HVVSGAMD-GINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~-GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.++..++. .....|...|.+|+|||..+.
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILY 36 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHH
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHH
Confidence 34455555 456678889999999998773
No 346
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=25.36 E-value=17 Score=36.10 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.2
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|+|||.++.
T Consensus 3 ~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CEEEESCCSSCHHHHHH
T ss_pred EEEEECCCCChHHHHHH
Confidence 45678999999999974
No 347
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=25.31 E-value=17 Score=37.32 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=13.4
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.|+-.|++|||||..-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4677999999999864
No 348
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=25.30 E-value=31 Score=43.00 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||.. +......+ -.+.|.||+.-|.+|||||.+.
T Consensus 128 Hifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 128 HVYAV-TEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred hHHHH-hHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 56653 33333333 3699999999999999999885
No 349
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=25.29 E-value=16 Score=36.54 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.1
Q ss_pred eeeecccCCCCccccc
Q 002808 144 IFAYGVTSSGKTHTMH 159 (878)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (878)
+.-.|++|||||..+.
T Consensus 26 ~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIK 41 (218)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4457999999999874
No 350
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.26 E-value=6.9e+02 Score=28.46 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 520 IDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 520 ~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
.|-|-.|.+..+..|..-...|..|.+.... ...=++.|++.++.++.||..++..|
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~------~~~~i~~Iq~slk~~Q~Qi~en~n~~ 144 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTT------MYQYVNMIDNKLVKTQKQRKDNDIIL 144 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHhhcccccccchhhHH
Confidence 3444455555555555444444444333221 12235567777777766666666555
No 351
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.08 E-value=3.6e+02 Score=23.91 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccch-----hhhH-HHHHHHHHhhhhhhhhHHHHhhhHHHHHH
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS-----EVSQ-SFAELAAQLNEKSFELEVKAADNRIIQEQ 629 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~-----ev~q-al~eL~~q~~eKs~elE~ksadN~~lqEq 629 (878)
.+..++..|..++...+.+|..|++.+...... .+.. .+-. ...++ ++....+...++.+
T Consensus 14 ~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~----g~~CPvCgs~l~~~~~~~~----------i~~~~~~l~~l~~~ 79 (112)
T 1l8d_A 14 TIEEERNEITQRIGELKNKIGDLKTAIEELKKA----KGKCPVCGRELTDEHREEL----------LSKYHLDLNNSKNT 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----SEECTTTCCEECHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCcCCHHHHHHH----------HHHHHHHHHHHHHH
Confidence 355566677777777777777777777544221 0111 1111 00111 12222344445666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 002808 630 LNQKICECEGLQETIGFLKQQLN 652 (878)
Q Consensus 630 L~~K~~e~~~lqeel~~Lk~ql~ 652 (878)
+.....++..+..++..|+.++.
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777777766
No 352
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.96 E-value=4.3e+02 Score=24.73 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 002808 636 ECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 636 e~~~lqeel~~Lk~ql~~~~~ 656 (878)
...+||.+|..|.++|.+++.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~a 92 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASA 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666554
No 353
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=24.89 E-value=40 Score=38.26 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.0
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+..|++|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 3567788999999999985
No 354
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=24.88 E-value=53 Score=36.88 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.0
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-+|++|+|||++..
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57778999999999985
No 355
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=24.79 E-value=30 Score=43.27 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=15.9
Q ss_pred HHhhcCCCcceeeecccCCCCcc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTH 156 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTy 156 (878)
..++.|.| ++..|+||||||.
T Consensus 66 ~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 66 KRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHhCCC--EEEEcCCCCCHHH
Confidence 34567755 6778999999995
No 356
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.62 E-value=3.7e+02 Score=23.90 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 556 QLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 556 ~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
+++.+++...+....+.+.|..|.++|
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355566666666666666666666666
No 357
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.57 E-value=59 Score=34.24 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=26.2
Q ss_pred HHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhH
Q 002808 714 ELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERL 764 (878)
Q Consensus 714 ~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l 764 (878)
+|.....+|..+|.||.+ +||++-.||.+|..|+++|
T Consensus 58 eL~~ql~~L~arNe~L~~--------------~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLME--------------TLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHTTTHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 455566777888888764 4777777777777777666
No 358
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.53 E-value=3.2e+02 Score=25.42 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 002808 625 IIQEQLNQKICECEGLQETIGFLK 648 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk 648 (878)
.|.+-..+-+.++..||.|...|.
T Consensus 81 ~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 81 VLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHhhccchh
Confidence 334444445556666666666655
No 359
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.49 E-value=3.2e+02 Score=30.71 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH-------HhcCCch---------HHHHHHHHHHHHHHhhhhHHHHHH
Q 002808 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEE-------AARNPQK---------EQLQVEIKKLRDEIKGKNDQIALL 578 (878)
Q Consensus 515 ~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq-------a~~~~~~---------e~iq~e~~~l~~Ei~~k~~qi~~L 578 (878)
++.-.++..-++|+..=++|...|+..+.++.. +.....+ .++..|+.+++.-|.....+|+.|
T Consensus 31 kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l 110 (411)
T 3ghg_C 31 TYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYL 110 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhhhhhcccCcccchhhhHHHHHHHHHhhhhhhh
Q 002808 579 EKQIADSIMTSHNTMDNSEVSQSFAELAAQLNEKSFE 615 (878)
Q Consensus 579 e~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~eKs~e 615 (878)
+..+. .....++-|.....++.++..+
T Consensus 111 ~~~~~----------~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 111 QEIYN----------SNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHH----------HHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHhcc
No 360
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=24.46 E-value=37 Score=37.57 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=23.1
Q ss_pred HHHHHHHHHHh----hcCCCcceeeecccCCCCccccc
Q 002808 126 DIAAQHVVSGA----MDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 126 ~~~~~plV~~v----l~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..+..++..+ -.|.-..|+-+|+.|+|||+...
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHH
Confidence 33444444433 25666678899999999998864
No 361
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.44 E-value=1.7e+02 Score=22.56 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhHH
Q 002808 830 AELQRKVEESKKREAYLENELANMW 854 (878)
Q Consensus 830 ~el~~~~~e~k~~e~~len~lanmw 854 (878)
+.|++|-=--|--=||||.|+||+-
T Consensus 20 etlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 20 ETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3455555555666799999999864
No 362
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.39 E-value=34 Score=40.45 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=34.4
Q ss_pred eEEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
.|..-.=|.|...|..-+.. ++..+-.|.. .....|.|||||||||-
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~-~~~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKK-HQTLLGATGTGKTFTVS 50 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCS-EEEEEECTTSCHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCC-cEEEECcCCcHHHHHHH
Confidence 36666778899999888765 4555555642 24557999999999994
No 363
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=24.33 E-value=18 Score=34.46 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.4
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999875
No 364
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=24.32 E-value=33 Score=41.72 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||..+ ......+ -.+.|.||+.-|.+|||||.+.
T Consensus 138 HifaiA-~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 138 HIFAVA-EEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHhHHH-HHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 466533 2333333 3699999999999999999885
No 365
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=24.29 E-value=27 Score=37.71 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHhhc-CCC--cceeeecccCCCCccccc
Q 002808 130 QHVVSGAMD-GIN--GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~-GyN--~tIfAYGqTGSGKTyTM~ 159 (878)
-+-++.++. |+. ..+.-||++|||||..+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 355788885 443 457789999999998874
No 366
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.29 E-value=3.9e+02 Score=23.95 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 555 EQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 555 e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
++++.+++.+.+....+.+.|..|.++|
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~ 53 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3466677777777777777777777777
No 367
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.14 E-value=1.2e+02 Score=22.44 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 625 IIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 625 ~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
+|.+...+...++.+|+.+|..||.-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 355566667788899999999999865
No 368
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=24.08 E-value=31 Score=42.25 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||.. +......+ -.+.|.||+.-|.+|||||.+.
T Consensus 151 Hifai-A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 151 HLFSV-ADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp CHHHH-HHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred cHHHH-HHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 45652 33333333 3699999999999999999885
No 369
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.05 E-value=19 Score=34.12 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.7
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.|+-.|.+|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999875
No 370
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.02 E-value=3.3e+02 Score=26.05 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCcccccc
Q 002808 701 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRT 780 (878)
Q Consensus 701 q~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~n~~l~~el~~~~~~~~~~~~ 780 (878)
...+.+.|+.+..+|.......+....+|.++..-.+.+-..|=-+++.+..||--|+..==--+.+.
T Consensus 23 ~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~M------------ 90 (135)
T 2e7s_A 23 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNL------------ 90 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45566777777777776666666667777777766677777777777777777765542211111111
Q ss_pred cccccCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 002808 781 SAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESK 840 (878)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k 840 (878)
|.+=+++-..-..|-..|+..|.+|+-+=+-++..+-+-|
T Consensus 91 --------------------Va~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 91 --------------------VADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp --------------------HHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111344444555666777777777766665555554444
No 371
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=23.86 E-value=18 Score=34.12 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.3
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|..|||||+.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 57778999999998863
No 372
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=23.73 E-value=35 Score=41.48 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||.. +......+ -.+.|.||+.-|.+|||||.+.
T Consensus 153 Hifai-A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 153 HIFSI-SDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhhHH-HHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 46653 33333333 3799999999999999999885
No 373
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=23.59 E-value=20 Score=34.05 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.2
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|..|||||+...
T Consensus 6 ~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57788999999998753
No 374
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.54 E-value=3.5e+02 Score=23.16 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhhhhHHHH----hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 599 SQSFAELAAQLNEKSFELEVKA----ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 599 ~qal~eL~~q~~eKs~elE~ks----adN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
+|++.--..+..+++.+++.+. ..+..+.+++......+..++.++..++++|..+...
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 375
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.46 E-value=71 Score=33.63 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=21.7
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002808 615 ELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQ 649 (878)
Q Consensus 615 elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ 649 (878)
+++..++.|+.|.++|+....++..|+++|..|++
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555666777777777666666666666555543
No 376
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.37 E-value=1.7e+02 Score=22.75 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=0.0
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002808 615 ELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 651 (878)
Q Consensus 615 elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql 651 (878)
+||.+++|.+.-.-+|.++.+. ||.|.+.|+|-|
T Consensus 7 eLE~r~k~le~~naeLEervst---Lq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLST---LQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHh
No 377
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=23.32 E-value=22 Score=43.02 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=13.7
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
..++..|+||||||..+
T Consensus 110 ~~vii~gpTGSGKTtll 126 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQI 126 (773)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34677899999999954
No 378
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.27 E-value=2.7e+02 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHhh
Q 002808 563 KLRDEIKGKNDQIALLEKQIAD 584 (878)
Q Consensus 563 ~l~~Ei~~k~~qi~~Le~~i~~ 584 (878)
+.+.|++.-..+|..||.+|..
T Consensus 19 keqrEle~le~~Ie~LE~~i~~ 40 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEA 40 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888843
No 379
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.25 E-value=3.3e+02 Score=30.73 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH---H-hcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEE---A-ARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq---a-~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~ 587 (878)
.|++..|+++.+.+..++..-..--+.++++ + ....+-+.+..+++.|.++|++.+.+++.+|..|.+...
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444443332222222222 1 223455778899999999999999999999999977665
No 380
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=23.25 E-value=19 Score=35.27 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=13.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|++|||||+.+.
T Consensus 14 ~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999998763
No 381
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=23.19 E-value=36 Score=37.66 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=15.0
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|.-+|++|||||..+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 367789999999998764
No 382
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.03 E-value=92 Score=25.13 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=21.4
Q ss_pred cCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002808 550 RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQI 582 (878)
Q Consensus 550 ~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i 582 (878)
...|.+.++.|+..|+..+.+-+.++..|..++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666665
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=22.98 E-value=24 Score=33.35 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=10.7
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..|+-.|..|||||+...
T Consensus 6 ~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CEEEEECCC----CHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998753
No 384
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.88 E-value=67 Score=28.00 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLA 740 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~la 740 (878)
-....++.+++.+|..+|..|..+.+.|..|-.+-|+|=
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999988888888877663
No 385
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=22.83 E-value=20 Score=42.68 Aligned_cols=16 Identities=50% Similarity=0.567 Sum_probs=13.5
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.|+..|+||||||+.+
T Consensus 157 ~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYHA 172 (677)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999843
No 386
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=22.81 E-value=21 Score=34.43 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.4
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|..|||||+...
T Consensus 12 ~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 12 NILITGTPGTGKTSMAE 28 (184)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998753
No 387
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=22.75 E-value=28 Score=37.02 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=22.2
Q ss_pred HHHHHHhhc-CC--CcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
-+-++.++. |+ ...+.-||++|+|||..+.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 356777885 33 3457889999999998764
No 388
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=22.74 E-value=20 Score=36.04 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=13.8
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.++-+|..|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 35678999999999863
No 389
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=22.66 E-value=19 Score=42.54 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=22.1
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCcccc
Q 002808 118 TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 118 ~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..-|.+++.. +++|. .++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~--~~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGK--NLLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCS--CEEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCC--cEEEEcCCccHHHHHH
Confidence 4457777764 34554 4677899999999876
No 390
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=22.57 E-value=41 Score=35.85 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=19.4
Q ss_pred HHHHhhcCC-CcceeeecccCCCCccccc
Q 002808 132 VVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 132 lV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (878)
+...+-.|. .-.++-||+.|+|||.+..
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 333334443 3458889999999998864
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=22.56 E-value=22 Score=36.90 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHHhhcCCC--cceeeecccCCCCccccc
Q 002808 133 VSGAMDGIN--GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 133 V~~vl~GyN--~tIfAYGqTGSGKTyTM~ 159 (878)
++.+..|+. ..+.-+|++|+|||..+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 455555543 256678999999999874
No 392
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.55 E-value=1.8e+02 Score=25.75 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHhhhhhHHHHHHHHhhc
Q 002808 844 AYLENELANMWVLVAKLKKS 863 (878)
Q Consensus 844 ~~len~lanmw~lvaklkk~ 863 (878)
..||+++.+.=--+.+||+.
T Consensus 61 ~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 61 ERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45566666666677777764
No 393
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=22.51 E-value=28 Score=41.04 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.5
Q ss_pred cceeeecccCCCCcccc
Q 002808 142 GTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (878)
..++..|+||||||...
T Consensus 47 ~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEEcCCCCcHHHHH
Confidence 45778899999999886
No 394
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=22.46 E-value=21 Score=33.79 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.6
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
..+-||++|||||..|.
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34568999999998863
No 395
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=22.35 E-value=8.2e+02 Score=27.51 Aligned_cols=82 Identities=9% Similarity=0.149 Sum_probs=52.8
Q ss_pred HHHHHhhhHHHHHhhhHHHHHHHHH-----HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcccchh
Q 002808 523 LREQQKILAGEVALHSSALKRLSEE-----AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSE 597 (878)
Q Consensus 523 L~eQlk~~~~Ei~~~ss~lkrL~eq-----a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~~~~e 597 (878)
+.+..+.+..||.-+-..+..+.+. ....|..+.|+..+..|+..=+.-++-..--++++.++...-.--.|+.|
T Consensus 131 l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~E 210 (450)
T 3r6n_A 131 KQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQS 210 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566667778888887777777666 34788888899888888877666666566666666544433332233444
Q ss_pred hhHHHHH
Q 002808 598 VSQSFAE 604 (878)
Q Consensus 598 v~qal~e 604 (878)
+..-|.|
T Consensus 211 aesWL~e 217 (450)
T 3r6n_A 211 TEAYLKG 217 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 396
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.30 E-value=4.4e+02 Score=23.88 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHh
Q 002808 704 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLM 758 (878)
Q Consensus 704 e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~ 758 (878)
+.+.||.+..+|...+...+....+|.++..-.+.+-..|=-+++.+..||--|+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888777777777777777777777776554
No 397
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=22.26 E-value=22 Score=33.29 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.1
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|..|||||+...
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47788999999998753
No 398
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=22.16 E-value=27 Score=43.49 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=16.3
Q ss_pred hhcCCCcceeeecccCCCCcccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
++.|.+ ++..++||||||...
T Consensus 98 l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 98 IDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHTCE--EEEECCTTSCHHHHH
T ss_pred HHcCCC--EEEECCCCCChHHHH
Confidence 455654 778899999999874
No 399
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=22.06 E-value=39 Score=42.43 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHh-hcCCCcceeeecccCCCCcccc
Q 002808 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (878)
.||. ++......+ -.|.|-||+.-|.+|||||.+.
T Consensus 126 HIfa-iA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 126 HVFA-IADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 5675 333333333 3799999999999999999885
No 400
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=21.98 E-value=22 Score=33.67 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.1
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|..|||||+...
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998763
No 401
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=21.98 E-value=6.6e+02 Score=26.20 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 002808 520 IDLLREQQKILAGEVALHSSALKRLSEEA-----ARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (878)
Q Consensus 520 ~dlL~eQlk~~~~Ei~~~ss~lkrL~eqa-----~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~ 584 (878)
+..+.+..+.+..||+-|-..+..+.+.+ ...|.-+.|+.-+..|+..-+.-.+-...-++++.+
T Consensus 43 l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~ 112 (283)
T 3pe0_A 43 MTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 112 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667778899999988888887773 367888888888888877766665555555565543
No 402
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=21.96 E-value=27 Score=44.01 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHhhcCCCcceeeecccCCCCcccc
Q 002808 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (878)
..++.|.+ |+..|+||||||...
T Consensus 194 ~~i~~g~d--vLV~ApTGSGKTlva 216 (1108)
T 3l9o_A 194 SCIDRGES--VLVSAHTSAGKTVVA 216 (1108)
T ss_dssp HHHTTTCC--EEEECCSSSHHHHHH
T ss_pred HHHHcCCC--EEEECCCCCChHHHH
Confidence 34466754 678999999999774
No 403
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.96 E-value=25 Score=33.79 Aligned_cols=21 Identities=24% Similarity=0.053 Sum_probs=16.0
Q ss_pred cCCCcceeeecccCCCCcccc
Q 002808 138 DGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM 158 (878)
.+..-.|+-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344556888999999999875
No 404
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.90 E-value=6.2e+02 Score=28.17 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH---HhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccCcc
Q 002808 517 IDQIDLLREQQKILAGEVALHSSALKRLSEE---AARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTM 593 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq---a~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~~~~k~ 593 (878)
++++...-..+.....++..-+..++.+..+ -.++.|+ ++.+..++.++||..|.++| ..
T Consensus 69 Ie~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn--------~~~e~s~eLe~~i~~lk~~V---------~~ 131 (390)
T 1deq_A 69 INKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDN--------TFKQINEDLRSRIEILRRKV---------IE 131 (390)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchH--------HHHHHHHHHHHHHHHHHHHH---------HH
Q ss_pred cchhhhHHHHHHHHHhhhhhhhhHHHH---------------------hhhHHHHHHHHH
Q 002808 594 DNSEVSQSFAELAAQLNEKSFELEVKA---------------------ADNRIIQEQLNQ 632 (878)
Q Consensus 594 ~~~ev~qal~eL~~q~~eKs~elE~ks---------------------adN~~lqEqL~~ 632 (878)
-+- -+..|.--..+.=-|.+.||++- .+++.+|+||.+
T Consensus 132 q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~q 190 (390)
T 1deq_A 132 QVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQ 190 (390)
T ss_pred HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHh
No 405
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.88 E-value=21 Score=36.59 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=15.5
Q ss_pred cceeeecccCCCCccccc
Q 002808 142 GTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (878)
..++-||.+|+|||..+.
T Consensus 13 ~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELI 30 (223)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 467788999999999886
No 406
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=21.88 E-value=19 Score=37.19 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.5
Q ss_pred hcCCCcceeeecccCCCCcccc
Q 002808 137 MDGINGTIFAYGVTSSGKTHTM 158 (878)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM 158 (878)
-.|+...|...|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3588899999999999999766
No 407
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=21.83 E-value=21 Score=38.30 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.7
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|++|+|||+|+.
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 56778999999999985
No 408
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=21.82 E-value=30 Score=36.55 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=22.3
Q ss_pred HHHHHHhhc-CC--CcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
-+-++.++. |+ ...+.-||++|+|||..+.
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 466777775 43 3457889999999998764
No 409
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.81 E-value=3.9e+02 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhhhHHHHH
Q 002808 517 IDQIDLLREQQKILAGEVA 535 (878)
Q Consensus 517 ~d~~dlL~eQlk~~~~Ei~ 535 (878)
..+++-|+.+|.-..+=++
T Consensus 23 ~~ei~~L~~~L~~AEeaL~ 41 (110)
T 2v4h_A 23 SMQLEDLRQQLQQAEEALV 41 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4589999998876544333
No 410
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.44 E-value=2.8e+02 Score=31.82 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=40.5
Q ss_pred HHhhhHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhc
Q 002808 526 QQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT 588 (878)
Q Consensus 526 Qlk~~~~Ei~~~ss~lkrL~eqa~~~~~~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~s~~~ 588 (878)
+++.+..+.|..+..+..++. ...+-+.+..+++.|.++|++.+.+++.+|..|.+....
T Consensus 48 ~~~~l~~~rn~~sk~i~~~k~---~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 48 DLDEHNKKLNSVQKEIGKRFK---AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433 223456688999999999999999999999999776653
No 411
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=21.37 E-value=1.3e+02 Score=26.17 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 002808 554 KEQLQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (878)
Q Consensus 554 ~e~iq~e~~~l~~Ei~~k~~qi~~Le~~i~~ 584 (878)
.+.+=..+-+++.++..++.+|+.||.+|-.
T Consensus 16 reELi~l~lk~~~~l~~k~~~v~eLEdYID~ 46 (75)
T 3tso_C 16 YEEVLQELVKHKELLRRKDTHIRELEDYIDN 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455778888999999999999999943
No 412
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.34 E-value=4.2e+02 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=10.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Q 002808 633 KICECEGLQETIGFLKQQLNDALE 656 (878)
Q Consensus 633 K~~e~~~lqeel~~Lk~ql~~~~~ 656 (878)
+..++..|+.+.+.-++.|..+|.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 413
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=21.25 E-value=38 Score=39.43 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=26.4
Q ss_pred EEeccccCCCCcchhHHHHHHHHHHHHhhcCCCcceeeecccCCCCccccc
Q 002808 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
..|+.+++. ..+. ..+-..+-.| ..++-+|++|+|||+.+.
T Consensus 38 ~~l~~i~G~----~~~l----~~l~~~i~~g--~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 38 KLIDQVIGQ----EHAV----EVIKTAANQK--RHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp SHHHHCCSC----HHHH----HHHHHHHHTT--CCEEEECCTTSSHHHHHH
T ss_pred cccceEECc----hhhH----hhccccccCC--CEEEEEeCCCCCHHHHHH
Confidence 356666653 3333 3333444456 467789999999999874
No 414
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.23 E-value=2.2e+02 Score=24.67 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=30.1
Q ss_pred hhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 610 NEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 610 ~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
.+..-+||+|-|--+..=|+||+ .....|.+|..|+.||..+.+.
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~---~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSE---ALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555688888777777676663 5566677777777777665543
No 415
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=21.19 E-value=26 Score=41.72 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.1
Q ss_pred CCcceeeecccCCCCccccc
Q 002808 140 INGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (878)
.++.++..|..|||||+||.
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH
Confidence 45778888999999999985
No 416
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.17 E-value=24 Score=38.47 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.0
Q ss_pred hhcCCCcceeeecccCCCCccccc
Q 002808 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (878)
+..|++..|...|.+|+|||..+.
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLln 55 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLIN 55 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHHH
Confidence 577999999999999999997763
No 417
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=21.13 E-value=24 Score=33.62 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.5
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.|+-.|..|||||+.-
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999864
No 418
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.10 E-value=1.7e+02 Score=25.65 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 002808 805 KRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELA 851 (878)
Q Consensus 805 ~~e~~~~~~re~~~e~~l~ek~~~e~el~~~~~e~k~~e~~len~la 851 (878)
+.||...+++ |+.++.+-++-++++.+-|+--|.+++.|+.-|+
T Consensus 34 ~~EL~~G~~K---L~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 34 EEDLKKGHQK---LEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777765 9999999999999999999999999999998764
No 419
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.10 E-value=80 Score=28.09 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLA 740 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~la 740 (878)
-....++.+++.+|..+|..|..+.+.|..|-.+-++|=
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999888888887777663
No 420
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.99 E-value=48 Score=30.76 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHHHHHHhhhhHHHH
Q 002808 551 NPQKEQLQVEIKKLRDEIKGKNDQIA 576 (878)
Q Consensus 551 ~~~~e~iq~e~~~l~~Ei~~k~~qi~ 576 (878)
.+..|++..||.+|+-||+..|.||+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999999999887775
No 421
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=20.99 E-value=22 Score=40.96 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.7
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-||++|+|||+++.
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3467889999999999874
No 422
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=20.98 E-value=23 Score=33.88 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.8
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999875
No 423
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.93 E-value=80 Score=32.21 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhHHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhh
Q 002808 702 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNH 760 (878)
Q Consensus 702 ~~e~e~lk~~~~~l~e~~~~l~~~n~kl~ee~~yak~lasaaavelk~l~~evtkl~~~ 760 (878)
-.|+++|..++..|-|+.+.|.-.|+.|.+=+-. ++.||+=+++|+.+
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~-----------~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEH-----------VQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 3488999999999999999998888776543333 34444555566543
No 424
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.89 E-value=24 Score=35.80 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=15.1
Q ss_pred HHHhhcCCCcceeeecccCCCCc-ccc
Q 002808 133 VSGAMDGINGTIFAYGVTSSGKT-HTM 158 (878)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKT-yTM 158 (878)
|.......-...|-||+.||||| +-|
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKTt~Ll 38 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKSTELM 38 (195)
T ss_dssp -------CCEEEEEEECTTSCHHHHHH
T ss_pred cccCCCCceEEEEEECCCCCcHHHHHH
Confidence 33333333457889999999999 444
No 425
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=20.86 E-value=25 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.5
Q ss_pred ceeeecccCCCCcccc
Q 002808 143 TIFAYGVTSSGKTHTM 158 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (878)
.|+-.|+.|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4777899999999875
No 426
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=20.75 E-value=2e+02 Score=26.75 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 627 QEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 627 qEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
+--|.....+...+|.+|..||.||+++...
T Consensus 61 K~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 61 KRTLTDREGVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346667789999999999999999997653
No 427
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.63 E-value=49 Score=24.33 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=24.0
Q ss_pred HhhHHHHHHHhhhhhhHHHHHHhhcCCc
Q 002808 748 KALSEEVAKLMNHKERLTAELAAAKSSP 775 (878)
Q Consensus 748 k~l~~evtkl~~~n~~l~~el~~~~~~~ 775 (878)
+.|-+.|..|+..|.-|..|++..|+.-
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678889999999999999999887654
No 428
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.61 E-value=3.9e+02 Score=29.92 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH--------HhcCCchH--------HHHHHHHHHHHHHhhhhHHHHHH
Q 002808 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEE--------AARNPQKE--------QLQVEIKKLRDEIKGKNDQIALL 578 (878)
Q Consensus 515 ~~~d~~dlL~eQlk~~~~Ei~~~ss~lkrL~eq--------a~~~~~~e--------~iq~e~~~l~~Ei~~k~~qi~~L 578 (878)
++.--++.--.+|+..-.||...++.++.|+.- ....|++. ++..++.+++.-+.....+|+.|
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l 110 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQL 110 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHhhhhhcccCcccchhhhHHHHHHHHHhhh
Q 002808 579 EKQIADSIMTSHNTMDNSEVSQSFAELAAQLNE 611 (878)
Q Consensus 579 e~~i~~s~~~~~~k~~~~ev~qal~eL~~q~~e 611 (878)
+.++ ......|..|..++.+
T Consensus 111 ~~~~-------------~~~~~~i~~l~~~i~~ 130 (409)
T 1m1j_C 111 TDMH-------------IMNSNKITQLKQKIAQ 130 (409)
T ss_dssp HHHH-------------HHHHHHHHHHHHHHHH
T ss_pred HHHH-------------HhhHHHHHHHHHHHHH
No 429
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=20.56 E-value=33 Score=37.30 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHhhc--CC--CcceeeecccCCCCccccc
Q 002808 131 HVVSGAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 131 plV~~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (878)
+-++.++. |+ ...+.-||++|||||+.+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 44556665 44 3457889999999998864
No 430
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.48 E-value=2.1e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 628 EQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 628 EqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
--|.....+...+|.+|..||.||+++...
T Consensus 45 ~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 45 STLQSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667789999999999999999997653
No 431
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=20.44 E-value=24 Score=34.48 Aligned_cols=17 Identities=41% Similarity=0.659 Sum_probs=13.9
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|+-.|+.|||||+.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46668999999998764
No 432
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=20.42 E-value=26 Score=34.09 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.4
Q ss_pred CcceeeecccCCCCccccc
Q 002808 141 NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (878)
...|+-.|..|||||+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468889999999998763
No 433
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=20.39 E-value=34 Score=37.12 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=21.7
Q ss_pred HHHHHHhhcC-C--CcceeeecccCCCCccccc
Q 002808 130 QHVVSGAMDG-I--NGTIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 130 ~plV~~vl~G-y--N~tIfAYGqTGSGKTyTM~ 159 (878)
-+-++.++.| + ...+.-||++|||||..+.
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3556777754 2 3457789999999998864
No 434
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.28 E-value=2.4e+02 Score=24.77 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=22.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002808 616 LEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 653 (878)
Q Consensus 616 lE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~ 653 (878)
|.-..++|-..+-+|+.--..|.+|+.++..|+.++-.
T Consensus 33 Ls~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 33 MEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555566666666666666666666666554
No 435
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.28 E-value=4.4e+02 Score=23.14 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHH
Q 002808 621 ADNRIIQEQLNQKICECEGLQE 642 (878)
Q Consensus 621 adN~~lqEqL~~K~~e~~~lqe 642 (878)
+.|+.|..+|..+..++.+|+.
T Consensus 52 ~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 52 ARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677777777777766553
No 436
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.27 E-value=6.4e+02 Score=25.62 Aligned_cols=52 Identities=15% Similarity=0.053 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002808 596 SEVSQSFAELAAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALEL 657 (878)
Q Consensus 596 ~ev~qal~eL~~q~~eKs~elE~ksadN~~lqEqL~~K~~e~~~lqeel~~Lk~ql~~~~~~ 657 (878)
.+--|++.+|..-+-... ..+++++.....++..++.++..|+.||-.....
T Consensus 117 ~d~~e~i~elfd~~~~~~----------~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 117 ENPAEVIRELIAYALDTI----------AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp SCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556665554432 2566666666777778888888888887665544
No 437
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=20.23 E-value=23 Score=34.57 Aligned_cols=17 Identities=41% Similarity=0.317 Sum_probs=13.6
Q ss_pred ceeeecccCCCCccccc
Q 002808 143 TIFAYGVTSSGKTHTMH 159 (878)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (878)
.|.-.|++|||||+.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35567999999999874
No 438
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.11 E-value=9.8e+02 Score=27.46 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHhhcC
Q 002808 830 AELQRKVEESKKREAYLENELANMWVLVAKLKKSH 864 (878)
Q Consensus 830 ~el~~~~~e~k~~e~~len~lanmw~lvaklkk~~ 864 (878)
+.|++.+-|=..+-+.-|.||+-+=-.+|++.|..
T Consensus 76 akY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~k 110 (497)
T 3iox_A 76 AKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHK 110 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333334445566666666667776544
Done!