Query 002810
Match_columns 877
No_of_seqs 384 out of 2155
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 11:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 2E-106 5E-111 878.0 38.6 736 22-875 26-787 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 5.2E-84 1.1E-88 781.5 36.0 790 37-875 5-806 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 4.3E-57 9.3E-62 456.3 16.3 302 317-877 69-382 (415)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 1.1E-54 2.4E-59 476.2 18.9 271 316-875 105-376 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 9.7E-54 2.1E-58 468.2 25.3 257 321-876 1-262 (300)
6 cd02671 Peptidase_C19O A subfa 100.0 1.4E-52 3E-57 461.7 28.4 272 312-874 17-295 (332)
7 cd02668 Peptidase_C19L A subfa 100.0 6.4E-52 1.4E-56 458.7 27.5 263 321-876 1-271 (324)
8 cd02660 Peptidase_C19D A subfa 100.0 4.8E-51 1E-55 453.4 27.9 286 320-876 1-297 (328)
9 cd02667 Peptidase_C19K A subfa 100.0 1.5E-50 3.3E-55 438.1 22.8 220 321-876 1-226 (279)
10 cd02669 Peptidase_C19M A subfa 100.0 1.7E-50 3.7E-55 462.6 24.2 273 314-876 114-408 (440)
11 cd02664 Peptidase_C19H A subfa 100.0 9.1E-50 2E-54 441.5 24.5 245 321-876 1-268 (327)
12 KOG1868 Ubiquitin C-terminal h 100.0 7.2E-51 1.6E-55 467.6 13.8 307 314-876 296-612 (653)
13 cd02657 Peptidase_C19A A subfa 100.0 2.3E-48 5E-53 427.4 26.4 256 321-876 1-266 (305)
14 cd02658 Peptidase_C19B A subfa 100.0 3.6E-48 7.8E-53 427.0 26.7 261 321-876 1-277 (311)
15 cd02661 Peptidase_C19E A subfa 100.0 4E-48 8.6E-53 425.2 26.0 270 319-875 1-272 (304)
16 cd02659 peptidase_C19C A subfa 100.0 8.4E-47 1.8E-51 420.5 25.7 263 318-876 1-276 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 2.4E-42 5.2E-47 365.4 20.6 90 764-876 97-187 (240)
18 cd02674 Peptidase_C19R A subfa 100.0 2.2E-39 4.7E-44 341.4 18.5 114 763-876 84-198 (230)
19 KOG1873 Ubiquitin-specific pro 100.0 2.1E-40 4.6E-45 369.0 11.1 155 315-500 201-368 (877)
20 KOG0944 Ubiquitin-specific pro 100.0 1.8E-39 3.9E-44 358.7 18.0 155 313-500 301-465 (763)
21 KOG1867 Ubiquitin-specific pro 100.0 1.2E-38 2.6E-43 361.5 17.6 290 314-877 156-453 (492)
22 cd02666 Peptidase_C19J A subfa 100.0 3.8E-37 8.1E-42 338.5 16.1 159 319-501 1-178 (343)
23 cd02665 Peptidase_C19I A subfa 100.0 2.4E-36 5.2E-41 311.9 15.8 94 764-875 94-187 (228)
24 PF00443 UCH: Ubiquitin carbox 100.0 5.3E-36 1.1E-40 321.3 19.1 147 319-483 1-150 (269)
25 cd02673 Peptidase_C19Q A subfa 100.0 6.1E-36 1.3E-40 315.1 18.1 97 764-875 111-208 (245)
26 KOG1866 Ubiquitin carboxyl-ter 100.0 2.5E-37 5.4E-42 343.2 6.5 267 314-875 90-376 (944)
27 COG5077 Ubiquitin carboxyl-ter 100.0 5.4E-35 1.2E-39 324.6 7.3 260 314-874 188-453 (1089)
28 COG5207 UBP14 Isopeptidase T [ 100.0 9.7E-34 2.1E-38 302.7 15.8 147 319-498 303-454 (749)
29 cd02257 Peptidase_C19 Peptidas 100.0 7.5E-32 1.6E-36 285.3 20.1 109 764-876 100-218 (255)
30 cd02672 Peptidase_C19P A subfa 100.0 3.6E-32 7.8E-37 290.3 11.7 110 763-876 117-238 (268)
31 KOG4598 Putative ubiquitin-spe 100.0 5.7E-33 1.2E-37 304.8 3.7 111 764-875 215-393 (1203)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 9.6E-32 2.1E-36 334.2 11.6 262 315-874 165-433 (1093)
33 KOG1864 Ubiquitin-specific pro 100.0 1.1E-29 2.3E-34 292.6 13.3 298 316-877 229-537 (587)
34 cd02670 Peptidase_C19N A subfa 99.9 9.4E-27 2E-31 242.7 13.6 91 762-876 79-192 (241)
35 PF13423 UCH_1: Ubiquitin carb 99.9 1.9E-25 4E-30 244.1 22.8 271 320-876 1-280 (295)
36 KOG2026 Spindle pole body prot 99.9 6.3E-24 1.4E-28 222.4 18.5 156 312-502 127-289 (442)
37 KOG1871 Ubiquitin-specific pro 99.9 1.5E-23 3.3E-28 220.8 11.3 107 764-875 266-380 (420)
38 PF06337 DUSP: DUSP domain; I 99.8 2.3E-21 4.9E-26 176.1 8.1 96 43-149 1-99 (99)
39 KOG1872 Ubiquitin-specific pro 99.8 1.3E-20 2.9E-25 204.0 4.1 152 317-496 103-262 (473)
40 smart00695 DUSP Domain in ubiq 99.8 1.5E-19 3.2E-24 159.5 9.7 83 41-149 2-85 (86)
41 PF14836 Ubiquitin_3: Ubiquiti 98.8 2.4E-08 5.2E-13 86.0 7.4 71 174-246 14-84 (88)
42 KOG1275 PAB-dependent poly(A) 98.6 1.2E-07 2.5E-12 110.4 10.2 92 784-876 702-816 (1118)
43 PF14533 USP7_C2: Ubiquitin-sp 97.3 0.003 6.5E-08 65.5 13.1 142 491-645 3-156 (213)
44 KOG1864 Ubiquitin-specific pro 97.0 0.00061 1.3E-08 80.2 4.9 105 322-427 34-153 (587)
45 PF14560 Ubiquitin_2: Ubiquiti 93.2 0.43 9.3E-06 41.9 7.8 66 175-240 15-81 (87)
46 cd01796 DDI1_N DNA damage indu 92.9 0.4 8.6E-06 40.4 6.8 62 172-239 8-69 (71)
47 cd01763 Sumo Small ubiquitin-r 92.4 1 2.3E-05 39.5 9.2 64 172-242 20-83 (87)
48 PTZ00044 ubiquitin; Provisiona 92.3 0.72 1.6E-05 39.2 7.8 64 172-242 9-72 (76)
49 cd01806 Nedd8 Nebb8-like ubiq 91.4 1.2 2.5E-05 37.7 8.2 62 174-242 11-72 (76)
50 cd01789 Alp11_N Ubiquitin-like 91.2 0.93 2E-05 39.6 7.4 65 176-240 15-79 (84)
51 cd01812 BAG1_N Ubiquitin-like 90.7 0.88 1.9E-05 38.0 6.6 61 173-240 9-69 (71)
52 cd01807 GDX_N ubiquitin-like d 90.6 0.97 2.1E-05 38.3 6.9 60 173-239 10-69 (74)
53 cd01803 Ubiquitin Ubiquitin. U 89.4 1.9 4.1E-05 36.4 7.8 63 174-243 11-73 (76)
54 cd01810 ISG15_repeat2 ISG15 ub 87.8 3.2 6.9E-05 35.1 8.1 64 172-242 7-70 (74)
55 cd01799 Hoil1_N Ubiquitin-like 87.8 1.8 3.9E-05 36.9 6.4 60 173-239 12-72 (75)
56 cd01808 hPLIC_N Ubiquitin-like 87.3 2.4 5.2E-05 35.5 7.0 57 176-239 12-68 (71)
57 PF11976 Rad60-SLD: Ubiquitin- 87.2 1.8 3.9E-05 36.3 6.2 58 173-237 10-68 (72)
58 cd01798 parkin_N amino-termina 87.1 2.6 5.6E-05 35.2 7.0 61 172-239 7-67 (70)
59 cd01802 AN1_N ubiquitin-like d 87.0 4.3 9.4E-05 36.9 8.8 65 172-243 36-100 (103)
60 cd01794 DC_UbP_C dendritic cel 85.4 3.4 7.5E-05 34.6 6.8 59 173-238 8-66 (70)
61 cd01793 Fubi Fubi ubiquitin-li 85.4 3.3 7.2E-05 35.0 6.9 61 175-242 10-70 (74)
62 PF00240 ubiquitin: Ubiquitin 83.9 3.8 8.2E-05 33.9 6.5 59 175-240 7-65 (69)
63 cd01809 Scythe_N Ubiquitin-lik 83.0 4.9 0.00011 33.4 6.9 60 173-239 10-69 (72)
64 cd01805 RAD23_N Ubiquitin-like 82.1 7.5 0.00016 32.9 7.8 62 174-242 11-74 (77)
65 cd01795 USP48_C USP ubiquitin- 82.1 4.8 0.0001 35.9 6.4 60 175-240 16-75 (107)
66 cd01800 SF3a120_C Ubiquitin-li 81.9 5.8 0.00013 33.7 7.0 61 176-243 10-70 (76)
67 cd01797 NIRF_N amino-terminal 81.4 7.9 0.00017 33.2 7.6 56 180-242 19-74 (78)
68 cd01792 ISG15_repeat1 ISG15 ub 81.0 9.9 0.00021 32.7 8.2 64 174-242 13-76 (80)
69 PF11543 UN_NPL4: Nuclear pore 80.9 4.5 9.8E-05 34.9 5.9 66 172-239 12-77 (80)
70 PF05408 Peptidase_C28: Foot-a 79.8 0.98 2.1E-05 44.6 1.6 25 316-340 30-54 (193)
71 cd01804 midnolin_N Ubiquitin-l 79.4 11 0.00024 32.2 7.9 58 174-239 12-69 (78)
72 cd01791 Ubl5 UBL5 ubiquitin-li 78.0 13 0.00027 31.6 7.6 60 173-239 11-70 (73)
73 smart00213 UBQ Ubiquitin homol 77.5 6.8 0.00015 31.5 5.8 53 175-234 11-63 (64)
74 COG3478 Predicted nucleic-acid 75.7 2.3 5.1E-05 34.3 2.3 37 781-817 2-40 (68)
75 cd01769 UBL Ubiquitin-like dom 73.8 13 0.00028 30.3 6.7 58 175-239 9-66 (69)
76 PF11470 TUG-UBL1: GLUT4 regul 69.2 7.2 0.00016 32.2 3.9 37 171-207 4-40 (65)
77 cd01813 UBP_N UBP ubiquitin pr 69.1 19 0.00042 30.4 6.7 63 173-239 9-71 (74)
78 PF00789 UBX: UBX domain; Int 66.0 30 0.00064 29.7 7.5 67 171-240 14-81 (82)
79 smart00166 UBX Domain present 65.2 51 0.0011 28.2 8.7 68 170-240 11-79 (80)
80 KOG1769 Ubiquitin-like protein 58.9 88 0.0019 28.1 8.9 62 171-239 28-89 (99)
81 cd01760 RBD Ubiquitin-like dom 56.8 52 0.0011 27.8 7.0 41 170-210 6-46 (72)
82 TIGR00601 rad23 UV excision re 56.6 28 0.00061 39.4 7.0 64 172-242 9-75 (378)
83 cd01767 UBX UBX (ubiquitin reg 55.8 86 0.0019 26.5 8.4 66 170-240 9-75 (77)
84 PF08715 Viral_protease: Papai 55.0 26 0.00057 38.5 6.3 80 316-424 99-179 (320)
85 PLN02560 enoyl-CoA reductase 53.1 56 0.0012 35.9 8.5 61 177-239 17-80 (308)
86 KOG0010 Ubiquitin-like protein 52.5 40 0.00088 38.7 7.3 69 165-240 16-84 (493)
87 cd01817 RGS12_RBD Ubiquitin do 51.2 74 0.0016 26.9 6.9 65 170-242 6-70 (73)
88 PF02196 RBD: Raf-like Ras-bin 50.6 53 0.0012 27.6 6.1 40 171-210 8-47 (71)
89 PF00788 RA: Ras association ( 50.0 58 0.0013 28.2 6.7 47 164-210 4-55 (93)
90 cd01768 RA RA (Ras-associating 46.3 62 0.0014 28.0 6.2 40 173-212 12-53 (87)
91 PF14560 Ubiquitin_2: Ubiquiti 46.2 1.9E+02 0.0042 25.0 9.3 65 520-584 14-81 (87)
92 cd01768 RA RA (Ras-associating 45.6 1.3E+02 0.0029 25.9 8.2 51 521-571 14-66 (87)
93 cd06406 PB1_P67 A PB1 domain i 44.2 85 0.0018 27.1 6.3 52 176-229 13-64 (80)
94 PF15499 Peptidase_C98: Ubiqui 43.9 18 0.00038 38.1 2.6 71 784-876 171-241 (275)
95 cd01774 Faf1_like2_UBX Faf1 ik 42.4 2.1E+02 0.0045 25.0 8.8 70 170-240 11-83 (85)
96 cd00196 UBQ Ubiquitin-like pro 41.9 88 0.0019 23.5 6.1 36 173-208 7-42 (69)
97 cd01773 Faf1_like1_UBX Faf1 ik 41.4 2.2E+02 0.0048 24.7 8.6 70 170-242 12-81 (82)
98 KOG1871 Ubiquitin-specific pro 39.2 15 0.00032 40.8 1.3 111 316-427 175-315 (420)
99 smart00314 RA Ras association 38.1 2.3E+02 0.0049 24.6 8.6 50 521-570 17-67 (90)
100 smart00455 RBD Raf-like Ras-bi 37.5 1.2E+02 0.0026 25.4 6.3 40 170-209 6-45 (70)
101 cd01791 Ubl5 UBL5 ubiquitin-li 37.3 1.7E+02 0.0037 24.7 7.2 58 521-584 13-71 (73)
102 cd01804 midnolin_N Ubiquitin-l 37.0 1.3E+02 0.0028 25.6 6.5 67 507-583 3-69 (78)
103 cd01771 Faf1_UBX Faf1 UBX doma 36.8 2.7E+02 0.0058 24.0 8.5 69 170-241 11-79 (80)
104 PF15499 Peptidase_C98: Ubiqui 34.9 1.5E+02 0.0033 31.4 7.7 28 323-350 6-33 (275)
105 cd01801 Tsc13_N Ubiquitin-like 33.5 1.2E+02 0.0026 25.7 5.8 54 181-239 20-74 (77)
106 PF12436 USP7_ICP0_bdg: ICP0-b 32.8 92 0.002 33.1 6.1 38 174-211 190-227 (249)
107 cd01815 BMSC_UbP_N Ubiquitin-l 31.0 1.2E+02 0.0025 26.0 5.1 51 182-239 19-72 (75)
108 PF00788 RA: Ras association ( 30.2 3.5E+02 0.0076 23.1 8.7 62 507-568 4-67 (93)
109 KOG1870 Ubiquitin C-terminal h 27.4 37 0.0008 42.8 2.2 103 762-869 481-583 (842)
110 PF09855 DUF2082: Nucleic-acid 27.4 46 0.00099 27.5 2.0 34 784-817 1-36 (64)
111 PF02017 CIDE-N: CIDE-N domain 26.5 2.4E+02 0.0052 24.3 6.3 29 184-212 21-49 (78)
112 cd01783 DAGK_delta_RA Ubiquiti 26.3 1E+02 0.0022 27.7 4.2 50 157-210 4-56 (97)
113 cd01788 ElonginB Ubiquitin-lik 26.1 3.1E+02 0.0067 25.4 7.1 51 176-233 14-64 (119)
114 cd01779 Myosin_IXb_RA ubitquit 26.0 4.6E+02 0.01 23.4 7.9 59 510-568 15-73 (105)
115 PF00240 ubiquitin: Ubiquitin 25.9 2.7E+02 0.0059 22.5 6.6 57 521-584 7-65 (69)
116 COG5227 SMT3 Ubiquitin-like pr 25.9 1.9E+02 0.0041 25.5 5.4 59 171-236 32-90 (103)
117 KOG1867 Ubiquitin-specific pro 24.9 29 0.00064 40.7 0.7 107 316-423 74-181 (492)
118 cd01792 ISG15_repeat1 ISG15 ub 23.3 4.1E+02 0.0089 22.5 7.4 38 522-560 15-52 (80)
119 PF11164 DUF2948: Protein of u 22.1 2.8E+02 0.0061 26.7 6.5 65 805-870 34-103 (138)
120 cd01772 SAKS1_UBX SAKS1-like U 22.0 4.3E+02 0.0093 22.5 7.2 66 171-240 12-78 (79)
121 PF14533 USP7_C2: Ubiquitin-sp 21.5 88 0.0019 32.4 3.4 38 175-212 35-75 (213)
122 cd01615 CIDE_N CIDE_N domain, 20.0 1.6E+02 0.0034 25.4 3.9 31 183-213 20-50 (78)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-106 Score=878.05 Aligned_cols=736 Identities=32% Similarity=0.545 Sum_probs=538.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCC
Q 002810 22 PDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNG 101 (877)
Q Consensus 22 ~~~e~~~i~~l~~~~~~~~~~g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~Ll~~~ 101 (877)
-.+|++.|.+ +. ...-+.++..|+++..|++...++...+ ++.||||+-..|++-
T Consensus 26 ~~~q~~li~e--~~-~e~~k~~~~a~i~~y~wyeg~fd~~~~d---------------------g~~pgPi~q~~i~d~- 80 (823)
T COG5560 26 LMMQEELIDE--KP-AESSKQCEYAVIFAYAWYEGMFDRASCD---------------------GGSPGPIVQGPIVDF- 80 (823)
T ss_pred hHHHHHHHhc--Cc-hhhhccCceEEEEehHHhhhhccccccc---------------------CCCCCCCCccccccc-
Confidence 5667777766 11 1223458899999999999988876543 268999999999972
Q ss_pred CCCCCCCcchhcccccCCCcEEEeCHHHHHHHHHHhC-CCCCCceeEeecCcccceeeeeccceEEEEecCCC-------
Q 002810 102 NGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK-GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN------- 173 (877)
Q Consensus 102 ~~~~~~~~~~Lk~~l~e~~Dy~~Vp~~~W~~l~~wYG-~~~~I~R~vi~~~~~~~~~vEvyP~~l~i~~~~~~------- 173 (877)
....|++.+.++.||-+|+..+|++|++||| .|+.++|.++.-+......+|+||+.|++..+...
T Consensus 81 ------e~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~ 154 (823)
T COG5560 81 ------EPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINL 154 (823)
T ss_pred ------ChhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEeccccccCCccccccceEEEEEEEeccchhhhc
Confidence 2457899999999999999999999999999 47889999976654333379999999998776431
Q ss_pred --CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhh--hccCCce----EEEEEEecC
Q 002810 174 --SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQD----ILLEVQVDN 245 (877)
Q Consensus 174 --~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~--~l~~~q~----ilve~~~~~ 245 (877)
....+.+|+..|+.++.+++...|-++.+++|||++...+..-.+... .+.... ....++. ..+|.-.+.
T Consensus 155 gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~--s~f~~~~~~a~~~~~l~~~t~~el~~d~ 232 (823)
T COG5560 155 GHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLD--SFFRRYRVLASDGRVLHPLTRLELFEDR 232 (823)
T ss_pred CCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCH--HHHhhcchhccchhhhcccHHHHhccch
Confidence 235678899999999999999999999999999999765543111110 000000 0000000 001111000
Q ss_pred ccccCCCCCCCccccccCCCCcccccCCCCCcCCCccCcccCCCCCCCCCCCCCCCCCCcCcccccccCCCCCccccccC
Q 002810 246 GISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNL 325 (877)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~Nl 325 (877)
+..-+ ...+.|+.-.. .+ . ..+..+.. + ..-|.+||.|+
T Consensus 233 --------------------s~lll--~kit~np~wlv-----------ds-i-~~~~n~si--n----ke~GtcGL~Nl 271 (823)
T COG5560 233 --------------------SVLLL--SKITRNPDWLV-----------DS-I-VDDHNRSI--N----KEAGTCGLRNL 271 (823)
T ss_pred --------------------hhhHH--hhhccCCccce-----------ee-e-cchhhhhH--H----hhccccceecC
Confidence 00000 00001100000 00 0 00111111 1 12499999999
Q ss_pred CCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhcCCCC
Q 002810 326 GNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFS 404 (877)
Q Consensus 326 GNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~ 404 (877)
||||||||+||||.|++.||+||+.. |..++|..||+|+.|.++.+|+.|+++++.+...+++|..|+..||.++..|.
T Consensus 272 GNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fs 351 (823)
T COG5560 272 GNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFS 351 (823)
T ss_pred CcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhc
Confidence 99999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCCh---HHHhHHHHhhccccCCCccccceeEEEEEEEEcCCC
Q 002810 405 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPD---EEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVC 481 (877)
Q Consensus 405 ~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~---~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C~~C 481 (877)
||.|||+|||+.+|||+|||+|||+.+|||.+.+|-....+ ...|+++|..|++||+|+|++||+|.++|+++|+.|
T Consensus 352 Gy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C 431 (823)
T COG5560 352 GYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGC 431 (823)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCc
Confidence 99999999999999999999999999999999988765554 456899999999999999999999999999999999
Q ss_pred CCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCce
Q 002810 482 SKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQI 561 (877)
Q Consensus 482 ~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 561 (877)
+.+|++||||++|+||||....|...|.+||.+|...| ..+++...+++.+|++.+..+.|+-.--.+.+.++|.+..
T Consensus 432 ~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~ 509 (823)
T COG5560 432 GSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGN 509 (823)
T ss_pred CceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccc
Confidence 99999999999999999999999999999999999888 6677888888888888888777765555788899999999
Q ss_pred eEeccCCccc-ccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEE-EecCCCCCHHHHHH
Q 002810 562 FRFFENPAEL-ISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVT-YLEEEHLSGADIDI 639 (877)
Q Consensus 562 ~~~~~d~~~~-~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~-~i~~~~~~~~~~~~ 639 (877)
++.+...... +..|.+.|.+|.|+ ..++...++++|-+.+.. ..+.+.||.|++. .+.....-.+.+..
T Consensus 510 y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvk 580 (823)
T COG5560 510 YNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVK 580 (823)
T ss_pred hhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHH
Confidence 9998876664 56799999999999 445557888998865442 4566899999732 22222222222211
Q ss_pred HHHHHccccccc-cccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCCC
Q 002810 640 AVSKLLSPLRRT-YSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (877)
Q Consensus 640 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (877)
...+.+...... ..-+..+. +-.. ... +.......++++. -+.+..+.........
T Consensus 581 E~~ell~~v~~k~tdvd~~~~---q~~l--~r~-----es~p~~wl~l~te-------------id~kree~veeE~~~n 637 (823)
T COG5560 581 EFEELLVLVEMKKTDVDLVSE---QVRL--LRE-----ESSPSSWLKLETE-------------IDTKREEQVEEEGQMN 637 (823)
T ss_pred HHHHHHHHHhhcchhhhhhhh---hccc--hhc-----ccCcchhhhhhhh-------------ccchhhhhhhhhhccC
Confidence 111111100000 00000000 0000 000 0000000000000 0000000000000112
Q ss_pred CCCcEEEEEeeccccccc-cC--cccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcccee
Q 002810 719 PGKHIKVLLDWTDDVHEL-YD--PSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795 (877)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a 795 (877)
.+..+.|.++|.+..... |. +.... .+.+ ...+.+||+|||.+|.++|+|+..|.||||.||++++|
T Consensus 638 ~nd~vvi~cew~ek~y~~lFsy~~lw~~-----~ei~-----~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqa 707 (823)
T COG5560 638 FNDAVVISCEWEEKRYLSLFSYDPLWTI-----REIG-----AAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQA 707 (823)
T ss_pred CCcceEEeeeccccchhhhhcCCccchh-----HHhh-----hccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhh
Confidence 345677889998765544 42 11000 0000 01468999999999999999999999999999999999
Q ss_pred EEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEEEEEEe
Q 002810 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKV 875 (877)
Q Consensus 796 ~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~ 875 (877)
+|+|+||++|+|||||||||++.+.+++||+++|.|||.+|||+.++....+...+|+||||.||+|++||||||||||+
T Consensus 708 sKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn 787 (823)
T COG5560 708 SKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARN 787 (823)
T ss_pred hhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeec
Confidence 99999999999999999999999999999999999999999999999887767799999999999999999999999998
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-84 Score=781.50 Aligned_cols=790 Identities=37% Similarity=0.562 Sum_probs=601.4
Q ss_pred ccCCCCCCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCCCCCCCCCcchhcccc
Q 002810 37 DLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNL 116 (877)
Q Consensus 37 ~~~~~~g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~Ll~~~~~~~~~~~~~Lk~~l 116 (877)
...+..|+.+++|...|+.+|++|++.... ... ........+++++||.+.+. .. .....+|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~---------~~~~~~~~k~~~~~n~~~~~--~~---~~~~~~~~~~ 69 (842)
T KOG1870|consen 5 RRTCKSGKSHGLILWRCLEQWQSYVGLESY-HEI---------STIHSQAPKHGLTDNLTFLR--CD---ACDKTLRVSL 69 (842)
T ss_pred ccccccccccchhhhhhhhhccccccceee-ecc---------ccccccccccccccCccchh--Hh---hhhhHHHhhh
Confidence 356789999999999999999999987211 111 11122347899999999997 22 1222899999
Q ss_pred cCCCcEEEeCHHHHHHHHHHh-CCCCCCceeEeecCcccc-eeeeeccceEEEEecCCCCceEEEeChhchHHHHHHHHH
Q 002810 117 EEGQDYVLVPQQVWEKLFCWY-KGGPALPRKMISEGIVNE-KRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVC 194 (877)
Q Consensus 117 ~e~~Dy~~Vp~~~W~~l~~wY-G~~~~I~R~vi~~~~~~~-~~vEvyP~~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~ 194 (877)
+++.||.++|+++|+.+..|| .+++++.|.|+..+.... ..+|+||..+.+..........+..+..+|+.++.+..+
T Consensus 70 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 149 (842)
T KOG1870|consen 70 LEGLDYTISPRSVQKLLVEWFKSGGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQADSTCPPLTSYFL 149 (842)
T ss_pred ccccccccCCHHHHhhccccccCCCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccccCccHHHHHHH
Confidence 999999999999999999999 577899999999875333 379999999998887766655588899999999999999
Q ss_pred HHhCCCCcceEEEEecCCCccccCCCCcc-CChhhhhccCCceEEEEEEecCccccCCCCC-CCccccccCCCCcccccC
Q 002810 195 KLRGIEQEKARIWDYFNKQRSTSPLDVSD-QTLDDAMLQMDQDILLEVQVDNGISMDSTGN-DLALVPIEPSRSSLTIAG 272 (877)
Q Consensus 195 ~~~~l~~~~~RlW~~~~~~~~~~ll~~~~-~tl~d~~l~~~q~ilve~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 272 (877)
..+.++.+..|+|.++..... .++...+ .++....+..++.+++|+...+......+.. .....+.. ......
T Consensus 150 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 224 (842)
T KOG1870|consen 150 ESGGLPRTKFAIWASYNEKYL-SLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDWLSE----RDPDAS 224 (842)
T ss_pred HhcCCCcccchhhhhhhHhhh-cccccccccccccccccccceEEeeeccccccchhhhchhhccccccc----cccccC
Confidence 999999999999999876644 4444444 7888888889999999987543211110000 00001100 000000
Q ss_pred CCCCcCCCccCcccCCCCCCCCCCCCCCCCCCcCcccccccCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-
Q 002810 273 GPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD- 351 (877)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~- 351 (877)
+....+ .+...........+|.+||.|+||||||||.+|||.+.+.+++||+..
T Consensus 225 ~~~~s~-------------------------~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~ 279 (842)
T KOG1870|consen 225 GTKETR-------------------------VDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDL 279 (842)
T ss_pred CCcccc-------------------------cccccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHh
Confidence 000000 000011123356789999999999999999999999999999999998
Q ss_pred CcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhcc
Q 002810 352 YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ 431 (877)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~ 431 (877)
+..+++..+++++.+.++.++..++..+|++....++|..++..++.+.++|.|+.|||+||||.||||.||+++++...
T Consensus 280 ~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~ 359 (842)
T KOG1870|consen 280 YDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSS 359 (842)
T ss_pred hHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCC
Confidence 55569999999999999999999999999988879999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEE
Q 002810 432 KPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVF 511 (877)
Q Consensus 432 ~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~ 511 (877)
+||++.+|..++++.+.+.+.|..+..++.|+|+++|.|++++++.|+.|+++++++|+|.+|+||+|....+...++++
T Consensus 360 kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~ 439 (842)
T KOG1870|consen 360 KPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVP 439 (842)
T ss_pred cCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCC
Q 002810 512 YANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQG 591 (877)
Q Consensus 512 ~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~ 591 (877)
+.++...|..+.+.+.+++.+.++.+++.+.+++. ...+..++++.+.+++++.........|...+.+++|+++....
T Consensus 440 ~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 518 (842)
T KOG1870|consen 440 HGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKV 518 (842)
T ss_pred cCCCCCChhheeeeccccchHHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccc
Confidence 99999999999999999999999999999999988 88999999999999999997767788899999999999985222
Q ss_pred Cce-E-EEEEeecccc-cccccccCCCceeccccEEEEecC-CCCCHHHHHHHHHHHccccccccccccccCCCCCCCcc
Q 002810 592 GKI-K-LEIVNRWQEK-SASDYLKGSERKLFGAPLVTYLEE-EHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLP 667 (877)
Q Consensus 592 ~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~g~P~v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (877)
... . +...+.+... .............||.|+++.++. ...+..++...+..+.+++...+... ...+..+....
T Consensus 519 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~-v~~~~~~~~~~ 597 (842)
T KOG1870|consen 519 QGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLN-VGYGVDDQSLK 597 (842)
T ss_pred cccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccc-cccCCCccccc
Confidence 222 1 2222222221 122233445668999999999996 77788888888888888776643111 11111111111
Q ss_pred ccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCc---cCCCCCCCCcEEEEEeeccccccccCcccccC
Q 002810 668 EVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ---KDSILKPGKHIKVLLDWTDDVHELYDPSYIKD 744 (877)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~ 744 (877)
...+....+.........+++.+....++................ ............++++|.+.....++.....+
T Consensus 598 ~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~ 677 (842)
T KOG1870|consen 598 EVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQ 677 (842)
T ss_pred ccccccccccccccCCChhHhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccc
Confidence 000000000000000001111110001111000000000000000 00111111122389999998877765555545
Q ss_pred CccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccc
Q 002810 745 LPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNK 824 (877)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~K 824 (877)
.++.........+.....++|++||+.|+++|.|+.++.|||++|++|++|+|+++||++|+|||||||||+|.++++.|
T Consensus 678 ~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k 757 (842)
T KOG1870|consen 678 PPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSK 757 (842)
T ss_pred cccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhh
Confidence 55555555555555566999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEEEEEEe
Q 002810 825 LDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKV 875 (877)
Q Consensus 825 i~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~ 875 (877)
+++.|+||+..||+++|+..++. .+|+||||+||+|+|++||||||+|+
T Consensus 758 ~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~~GHYta~~k~ 806 (842)
T KOG1870|consen 758 VKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLSGGHYTAYAKN 806 (842)
T ss_pred hCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcCCcchhhhhhc
Confidence 99999999999999999998864 99999999999999999999999998
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-57 Score=456.29 Aligned_cols=302 Identities=36% Similarity=0.561 Sum_probs=251.7
Q ss_pred CCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhH-HHHHHHHHHHHHhcCCCCccChHHHHH
Q 002810 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGE-LALAFGDLLRKLWSSGRAAVAPRAFKG 394 (877)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~-l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (877)
..++||.|+|||||||++||||+++..|...|+.. |.+.+|.++|.|..|. .+..|..|...|...+...|+|+.|++
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~ 148 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFID 148 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHH
Confidence 45899999999999999999999999999977777 8899999999999994 556666777777777788899999999
Q ss_pred HHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhc-cCCcccccCCCCC-----ChHHHhHHHHhhccccCCCccccce
Q 002810 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVK-QKPYIEMKDSGGR-----PDEEVANECWKNHKARNDSLIVDVF 468 (877)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~-~~~~~e~~~~~~~-----~~~~~a~~~w~~~~~~~~sii~~lF 468 (877)
.++..++.|++.+|||||||+.++||.|||+++.-. ++|..+.+|...+ +....+.-.|+.|...+.|+|.++|
T Consensus 149 i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f 228 (415)
T COG5533 149 ILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTF 228 (415)
T ss_pred HHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHH
Confidence 999999999999999999999999999999998754 3344444443221 1222344689999999999999999
Q ss_pred eEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCC
Q 002810 469 QGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKID 548 (877)
Q Consensus 469 ~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 548 (877)
.||++++++|..|+++|+++.+|..|.+|++.-.
T Consensus 229 ~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~---------------------------------------------- 262 (415)
T COG5533 229 FGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVV---------------------------------------------- 262 (415)
T ss_pred hhhhhhhhhhhhcCCceeEEeccceeeeccchhe----------------------------------------------
Confidence 9999999999999999999999999999886321
Q ss_pred CcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEec
Q 002810 549 EGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLE 628 (877)
Q Consensus 549 ~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~ 628 (877)
T Consensus 263 -------------------------------------------------------------------------------- 262 (415)
T COG5533 263 -------------------------------------------------------------------------------- 262 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCc
Q 002810 629 EEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSC 708 (877)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (877)
T Consensus 263 -------------------------------------------------------------------------------- 262 (415)
T COG5533 263 -------------------------------------------------------------------------------- 262 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCC
Q 002810 709 KPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQ 788 (877)
Q Consensus 709 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~ 788 (877)
.+.|.|||+.|+++|.|+++|+|.||+
T Consensus 263 -----------------------------------------------------~~~l~eC~~~f~~~e~L~g~d~W~Cpk 289 (415)
T COG5533 263 -----------------------------------------------------QLGLQECIDRFYEEEKLEGKDAWRCPK 289 (415)
T ss_pred -----------------------------------------------------eecHHHHHHHhhhHHhhcCcccccCch
Confidence 125899999999999999999999999
Q ss_pred CCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeE----eccCCCCCcccccccCCCCCceEEEEEEEEeeccC
Q 002810 789 CKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFV----NFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGL 864 (877)
Q Consensus 789 Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V----~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l 864 (877)
|++++.++|++.|.++|++|||||+||.-.-..+.||++.- +||.|-++--.|-..-.-.+..|.|+||++|+|++
T Consensus 290 C~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L 369 (415)
T COG5533 290 CGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTL 369 (415)
T ss_pred hcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeeccee
Confidence 99999999999999999999999999997666677776653 45543222222222112246789999999999999
Q ss_pred CCCcEEEEEEeCC
Q 002810 865 GGGHYTAYAKVNA 877 (877)
Q Consensus 865 ~gGHYtAy~k~~~ 877 (877)
.||||+++|+.++
T Consensus 370 ~gGHY~s~v~~~~ 382 (415)
T COG5533 370 NGGHYFSEVKRSG 382 (415)
T ss_pred cCceeEEeeeecC
Confidence 9999999998763
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-54 Score=476.16 Aligned_cols=271 Identities=32% Similarity=0.547 Sum_probs=239.2
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 002810 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 395 (877)
..-.+||.|+|||||+|||||||.++|||++||+...+...+. ....++.++|+..+.........+++|..|+..
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~ 180 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH----RAKFCMLCTFQAHITRALHNPGHPISPSQILSN 180 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc----ccCeeeehHHHHHHHHHhcCCCCccChHHHHHh
Confidence 3457999999999999999999999999999999873322222 235679999999988888877779999999999
Q ss_pred HhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEE
Q 002810 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (877)
Q Consensus 396 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 475 (877)
|..+...|..+.|+||||||++++|.|+.-+-....+ .....+..++|.++|+|.++++
T Consensus 181 L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~---------------------~~~~sq~ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 181 LRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ---------------------VDPRSQDTTLVHQIFGGYLRSQ 239 (545)
T ss_pred hhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc---------------------CCcccccceehhhhhccchhhc
Confidence 9999999999999999999999999999876311100 0123445789999999999999
Q ss_pred EEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEE
Q 002810 476 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 555 (877)
Q Consensus 476 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 555 (877)
++|..|+++|.+||+.++|+|.|- .
T Consensus 240 vkC~~C~~vS~tyE~~~dltvei~-d------------------------------------------------------ 264 (545)
T KOG1865|consen 240 IKCLHCKGVSDTYEPYLDLTLEIQ-D------------------------------------------------------ 264 (545)
T ss_pred eecccCCCcccccccccceEEEec-c------------------------------------------------------
Confidence 999999999999999999999763 0
Q ss_pred EeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHH
Q 002810 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 635 (877)
Q Consensus 556 ~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~ 635 (877)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCC
Q 002810 636 DIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDS 715 (877)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (877)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcccee
Q 002810 716 ILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795 (877)
Q Consensus 716 ~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a 795 (877)
.-+|.+||+.|+++|.|+++|+|.|.+||+++.|
T Consensus 265 ----------------------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A 298 (545)
T KOG1865|consen 265 ----------------------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPA 298 (545)
T ss_pred ----------------------------------------------chhHHHHHHHhhhHHhhCCccccccchhhhhCcc
Confidence 0189999999999999999999999999999999
Q ss_pred EEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cCCCCcEEEEEE
Q 002810 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAYAK 874 (877)
Q Consensus 796 ~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k 874 (877)
.|++.|.++|.||+||||||+. ....||+..|.|| |.|||.|||..+++.+.+|.||||++|.| ....|||++|||
T Consensus 299 ~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvk 375 (545)
T KOG1865|consen 299 SKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVK 375 (545)
T ss_pred cceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEE
Confidence 9999999999999999999998 4568999999999 79999999998888999999999999999 889999999999
Q ss_pred e
Q 002810 875 V 875 (877)
Q Consensus 875 ~ 875 (877)
.
T Consensus 376 s 376 (545)
T KOG1865|consen 376 S 376 (545)
T ss_pred c
Confidence 5
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.7e-54 Score=468.17 Aligned_cols=257 Identities=30% Similarity=0.532 Sum_probs=224.4
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHHHHHHHhh
Q 002810 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRAFKGKLAR 398 (877)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~~~~~l~~ 398 (877)
||.|+||||||||+||||+| .+++.+|+.||.+||.+. ..+++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999998 357888999999999864 457999999999999
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEEc
Q 002810 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (877)
Q Consensus 399 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C 478 (877)
..|.|.+++||||||||.+|||.||++++...++...+ ....+........++|.++|+|++.++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN------------RKLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc------------ccccccccCCcCCCChhhhCceEEEeeEEe
Confidence 99999999999999999999999999998765433211 011222334456789999999999999999
Q ss_pred CCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeC
Q 002810 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 558 (877)
Q Consensus 479 ~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ 558 (877)
..|++.+.++|+|++|+|+||..
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~~--------------------------------------------------------- 146 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQN--------------------------------------------------------- 146 (300)
T ss_pred CCCCCCccccceeEEeccCCCCc---------------------------------------------------------
Confidence 99999999999999999998631
Q ss_pred CceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHHH
Q 002810 559 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (877)
Q Consensus 559 ~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~~ 638 (877)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCCC
Q 002810 639 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (877)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (877)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEE
Q 002810 719 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 798 (877)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~ 798 (877)
.+|++||+.|+++|.|.++|.|+|++|++++.|+|+
T Consensus 147 --------------------------------------------~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~ 182 (300)
T cd02663 147 --------------------------------------------TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKR 182 (300)
T ss_pred --------------------------------------------CCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEE
Confidence 179999999999999999999999999999999999
Q ss_pred EEeecCCCeEEEEEeceeecCC--cccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cCCCCcEEEEEEe
Q 002810 799 LDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAYAKV 875 (877)
Q Consensus 799 ~~i~~lP~iLiihLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~ 875 (877)
+.|+++|+|||||||||.++.. ...|+++.|+||+ .|||.++..........|+|+|||+|.| ++++||||||+|.
T Consensus 183 ~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~ 261 (300)
T cd02663 183 MKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS 261 (300)
T ss_pred EEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC
Confidence 9999999999999999999864 3679999999995 8999987654444568999999999999 5999999999997
Q ss_pred C
Q 002810 876 N 876 (877)
Q Consensus 876 ~ 876 (877)
+
T Consensus 262 ~ 262 (300)
T cd02663 262 H 262 (300)
T ss_pred C
Confidence 4
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-52 Score=461.70 Aligned_cols=272 Identities=28% Similarity=0.450 Sum_probs=220.5
Q ss_pred ccCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHH
Q 002810 312 KKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA 391 (877)
Q Consensus 312 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~ 391 (877)
.+....|++||.|+||||||||+||||+|+|+||+++.... +.......+ ..+..++..++......++|..
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~ 88 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQL-QSSFLLNPEKYNDELANQAPRR 88 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHH-HHHHHHHHHHHhhcccccCHHH
Confidence 34567899999999999999999999999999999986531 111111122 2223445666665556678999
Q ss_pred HHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEE
Q 002810 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (877)
Q Consensus 392 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~ 471 (877)
|+.++++.+|.|.++.||||||||.+|||.||+ +|.++|+|+
T Consensus 89 ~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~ 130 (332)
T cd02671 89 LLNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQ 130 (332)
T ss_pred HHHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceE
Confidence 999999999999999999999999999999983 267899999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcE
Q 002810 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 551 (877)
Q Consensus 472 ~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 551 (877)
+.++++|.+|++.+.++|+|++|+||||........
T Consensus 131 ~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~-------------------------------------------- 166 (332)
T cd02671 131 LVLRTRCLECETFTERREDFQDISVPVQESELSKSE-------------------------------------------- 166 (332)
T ss_pred EEEEEEeCCCCCeeceecccEEEEEEeCCCcccccc--------------------------------------------
Confidence 999999999999999999999999999865310000
Q ss_pred EEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCC
Q 002810 552 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 631 (877)
Q Consensus 552 ~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~ 631 (877)
.... +.
T Consensus 167 ----------------~~~~-------------------------------------------------------~~--- 172 (332)
T cd02671 167 ----------------ESSE-------------------------------------------------------IS--- 172 (332)
T ss_pred ----------------cccc-------------------------------------------------------cc---
Confidence 0000 00
Q ss_pred CCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCC
Q 002810 632 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 711 (877)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (877)
T Consensus 173 -------------------------------------------------------------------------------- 172 (332)
T cd02671 173 -------------------------------------------------------------------------------- 172 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCc
Q 002810 712 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 791 (877)
Q Consensus 712 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~ 791 (877)
........+|++||+.|+++|.|.++|.|+|++|+.
T Consensus 173 --------------------------------------------~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~ 208 (332)
T cd02671 173 --------------------------------------------PDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHH 208 (332)
T ss_pred --------------------------------------------cccccccCCHHHHHHHhCCcceecCCCCeeCCCCCC
Confidence 000012249999999999999999999999999999
Q ss_pred cceeEEEEEeecCCCeEEEEEeceeecC------CcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cC
Q 002810 792 HRQATKKLDLWMLPDVLVFHLKRFSYSR------YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GL 864 (877)
Q Consensus 792 ~~~a~K~~~i~~lP~iLiihLKRF~~~~------~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l 864 (877)
.+.|+|++.|+++|+||+||||||.++. ....|+++.|.||+ .|||.+|.... ....|+|+|||+|.| ++
T Consensus 209 ~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~--~~~~Y~L~~VI~H~G~~~ 285 (332)
T cd02671 209 YTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP--KNDVYRLFAVVMHSGATI 285 (332)
T ss_pred ceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC--CCCeEEEEEEEEEcCCCC
Confidence 9999999999999999999999999864 24679999999996 79999886543 468999999999999 69
Q ss_pred CCCcEEEEEE
Q 002810 865 GGGHYTAYAK 874 (877)
Q Consensus 865 ~gGHYtAy~k 874 (877)
++||||||+|
T Consensus 286 ~~GHY~a~vr 295 (332)
T cd02671 286 SSGHYTAYVR 295 (332)
T ss_pred CCCeEEEEEE
Confidence 9999999997
No 7
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.4e-52 Score=458.74 Aligned_cols=263 Identities=31% Similarity=0.512 Sum_probs=227.2
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCc-cccCC----CCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 002810 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDE-INTEN----PLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (877)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~-~~~~~----~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 395 (877)
||.|+||||||||+||||+|+|+||++++...... ....+ .......++.+|+.|+..|+.+...+++|..|+.+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 89999999999999999999999999998752111 11111 11123579999999999999988899999999998
Q ss_pred HhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEE
Q 002810 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (877)
Q Consensus 396 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 475 (877)
++ |..++||||||||.+|||.||+++..... ....++|.++|.|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67789999999999999999999853211 112467999999999999
Q ss_pred EEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEE
Q 002810 476 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 555 (877)
Q Consensus 476 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 555 (877)
++|..|++.+.+.|+|+.|+|+||..
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~~------------------------------------------------------ 155 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKGH------------------------------------------------------ 155 (324)
T ss_pred EEeCCCCCccccccccEEEEEEeccc------------------------------------------------------
Confidence 99999999999999999999988621
Q ss_pred EeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHH
Q 002810 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 635 (877)
Q Consensus 556 ~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~ 635 (877)
T Consensus 156 -------------------------------------------------------------------------------- 155 (324)
T cd02668 156 -------------------------------------------------------------------------------- 155 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCC
Q 002810 636 DIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDS 715 (877)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (877)
T Consensus 156 -------------------------------------------------------------------------------- 155 (324)
T cd02668 156 -------------------------------------------------------------------------------- 155 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcccee
Q 002810 716 ILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795 (877)
Q Consensus 716 ~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a 795 (877)
.+|++||+.|+.+|.|+++|.|+|++|++++.|
T Consensus 156 -----------------------------------------------~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a 188 (324)
T cd02668 156 -----------------------------------------------KTLEECIDEFLKEEQLTGDNQYFCESCNSKTDA 188 (324)
T ss_pred -----------------------------------------------CCHHHHHHHhhCceecCCCccccCCCCCceeee
Confidence 179999999999999999999999999999999
Q ss_pred EEEEEeecCCCeEEEEEeceeecC--CcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cCCCCcEEEE
Q 002810 796 TKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAY 872 (877)
Q Consensus 796 ~K~~~i~~lP~iLiihLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l~gGHYtAy 872 (877)
.|++.|.++|+||+||||||.|+. +.+.|+++.|+|| +.|||++|+.........|+|+|||+|.| ++.+|||+||
T Consensus 189 ~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~ 267 (324)
T cd02668 189 TRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAH 267 (324)
T ss_pred EEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEE
Confidence 999999999999999999999974 4578999999999 69999999976655678999999999999 6899999999
Q ss_pred EEeC
Q 002810 873 AKVN 876 (877)
Q Consensus 873 ~k~~ 876 (877)
+|..
T Consensus 268 ~k~~ 271 (324)
T cd02668 268 IKDE 271 (324)
T ss_pred EECC
Confidence 9963
No 8
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-51 Score=453.42 Aligned_cols=286 Identities=36% Similarity=0.630 Sum_probs=235.9
Q ss_pred cccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHHHHHHHhh
Q 002810 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLAR 398 (877)
Q Consensus 320 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 398 (877)
+||.|+||||||||+||||+|+|+|+++++...+..... ......++.++|+.|+..|+ ......+.|..|+.+++.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCL--SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccc--cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 599999999999999999999999999998752111000 11224579999999999994 445678899999999999
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEEc
Q 002810 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (877)
Q Consensus 399 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C 478 (877)
..+.|.+++||||||||.+|||.||+++....+.. .......++|.++|+|++.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeEc
Confidence 89999999999999999999999999986543221 001233578999999999999999
Q ss_pred CCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeC
Q 002810 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 558 (877)
Q Consensus 479 ~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ 558 (877)
..|++.+.+.|+|+.|+|+||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999986431000
Q ss_pred CceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHHH
Q 002810 559 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (877)
Q Consensus 559 ~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~~ 638 (877)
..
T Consensus 166 ---------~~--------------------------------------------------------------------- 167 (328)
T cd02660 166 ---------AL--------------------------------------------------------------------- 167 (328)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCCC
Q 002810 639 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (877)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (877)
.
T Consensus 168 --------------------~----------------------------------------------------------- 168 (328)
T cd02660 168 --------------------G----------------------------------------------------------- 168 (328)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred CCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEE
Q 002810 719 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 798 (877)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~ 798 (877)
........+|++||+.|+++|.+++.+ |+|++|++++.|.|+
T Consensus 169 -------------------------------------~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~ 210 (328)
T cd02660 169 -------------------------------------ESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQ 210 (328)
T ss_pred -------------------------------------ccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEE
Confidence 000012459999999999999998887 999999999999999
Q ss_pred EEeecCCCeEEEEEeceeecC-CcccccceeEeccCCCCCccccccc---------CCCCCceEEEEEEEEeeccCCCCc
Q 002810 799 LDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKYMKS---------KDGESYVYDLFAISNHYGGLGGGH 868 (877)
Q Consensus 799 ~~i~~lP~iLiihLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~v~~---------~~~~~~~YdL~AVinH~G~l~gGH 868 (877)
+.|.++|++||||||||.++. +...|+++.|.||. .|||++|+.. .......|+|+|||+|.|+.++||
T Consensus 211 ~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GH 289 (328)
T cd02660 211 LSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGH 289 (328)
T ss_pred EEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCc
Confidence 999999999999999999987 56789999999995 8999999985 123568899999999999999999
Q ss_pred EEEEEEeC
Q 002810 869 YTAYAKVN 876 (877)
Q Consensus 869 YtAy~k~~ 876 (877)
||||+|.+
T Consensus 290 Y~~~~~~~ 297 (328)
T cd02660 290 YTAYCRQG 297 (328)
T ss_pred EEEEEECC
Confidence 99999975
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-50 Score=438.11 Aligned_cols=220 Identities=41% Similarity=0.759 Sum_probs=198.9
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhc
Q 002810 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (877)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 400 (877)
||.|+||||||||+||||+|+|+||++++. +|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999964 7888999999889
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEEcCC
Q 002810 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480 (877)
Q Consensus 401 ~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C~~ 480 (877)
|.|.+++||||||||.+|||.|| ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 1377899999999999999
Q ss_pred CCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCc
Q 002810 481 CSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ 560 (877)
Q Consensus 481 C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~ 560 (877)
|++.+.+.|+|+.|+||++...
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~---------------------------------------------------------- 107 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEI---------------------------------------------------------- 107 (279)
T ss_pred CCCEeCccccceEEecCCCccc----------------------------------------------------------
Confidence 9999999999999999865211
Q ss_pred eeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHHHHH
Q 002810 561 IFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIA 640 (877)
Q Consensus 561 ~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~~~~ 640 (877)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCCCCC
Q 002810 641 VSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPG 720 (877)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (877)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEE
Q 002810 721 KHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLD 800 (877)
Q Consensus 721 ~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~ 800 (877)
...++|++||+.|+++|.|+++|.|+|++|++ |+|+..
T Consensus 108 ---------------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~ 145 (279)
T cd02667 108 ---------------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYL 145 (279)
T ss_pred ---------------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeE
Confidence 01248999999999999999999999999987 999999
Q ss_pred eecCCCeEEEEEeceeecCC-cccccceeEeccCCCCCcccccccC-----CCCCceEEEEEEEEeeccCCCCcEEEEEE
Q 002810 801 LWMLPDVLVFHLKRFSYSRY-LKNKLDTFVNFPILNLDLSKYMKSK-----DGESYVYDLFAISNHYGGLGGGHYTAYAK 874 (877)
Q Consensus 801 i~~lP~iLiihLKRF~~~~~-~~~Ki~~~V~FPl~~LDls~~v~~~-----~~~~~~YdL~AVinH~G~l~gGHYtAy~k 874 (877)
|+++|++|+||||||.++.. ...|+++.|+|| +.|||++|+..+ ......|+|+|||+|.|+..+|||+||+|
T Consensus 146 i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~ 224 (279)
T cd02667 146 ISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVK 224 (279)
T ss_pred hhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEE
Confidence 99999999999999999854 678999999999 699999999762 23568999999999999889999999999
Q ss_pred eC
Q 002810 875 VN 876 (877)
Q Consensus 875 ~~ 876 (877)
.+
T Consensus 225 ~~ 226 (279)
T cd02667 225 VR 226 (279)
T ss_pred cC
Confidence 63
No 10
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-50 Score=462.56 Aligned_cols=273 Identities=30% Similarity=0.454 Sum_probs=223.3
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRA 391 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~ 391 (877)
...+|++||.|+||||||||+||||+|+|+||++|+...... +. .....+++.+|+.++++||++. ...++|.+
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~ 189 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPHE 189 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cc---cCCCcHHHHHHHHHHHHHhccccCCCccCHHH
Confidence 456899999999999999999999999999999999752111 00 1234579999999999999865 57899999
Q ss_pred HHHHHhhhc-CCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeE
Q 002810 392 FKGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 470 (877)
Q Consensus 392 ~~~~l~~~~-~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G 470 (877)
|+.+++... +.|.+++||||||||.+|||.||+++++.. .++.++|.++|+|
T Consensus 190 fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~G 242 (440)
T cd02669 190 LLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQG 242 (440)
T ss_pred HHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccCc
Confidence 999998765 579999999999999999999999986421 2357899999999
Q ss_pred EEEEEEEcCCCC---------------CeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHH
Q 002810 471 QYKSTLVCPVCS---------------KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDL 535 (877)
Q Consensus 471 ~~~s~~~C~~C~---------------~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l 535 (877)
+++++++|..|. ..+.+.+||++|+|+||....
T Consensus 243 ~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~-------------------------------- 290 (440)
T cd02669 243 KVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPL-------------------------------- 290 (440)
T ss_pred eEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCcc--------------------------------
Confidence 999999987654 357789999999999986431
Q ss_pred HHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCC
Q 002810 536 ILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSE 615 (877)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (877)
+.+..
T Consensus 291 -----------------------------~~~~~---------------------------------------------- 295 (440)
T cd02669 291 -----------------------------FKDGN---------------------------------------------- 295 (440)
T ss_pred -----------------------------ccccc----------------------------------------------
Confidence 00000
Q ss_pred ceeccccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccce
Q 002810 616 RKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELS 695 (877)
Q Consensus 616 ~~~~g~P~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (877)
T Consensus 296 -------------------------------------------------------------------------------- 295 (440)
T cd02669 296 -------------------------------------------------------------------------------- 295 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEecCCCCCcCCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCc
Q 002810 696 FQLSLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTE 775 (877)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~ 775 (877)
....-+.++|++||+.|
T Consensus 296 ------------------------------------------------------------~~~~l~~~~l~e~L~ky--- 312 (440)
T cd02669 296 ------------------------------------------------------------EENIIPQVPLKQLLKKY--- 312 (440)
T ss_pred ------------------------------------------------------------cccccCcccHHHHHHhc---
Confidence 00001235899999765
Q ss_pred ccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCC---CCCceE
Q 002810 776 EPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD---GESYVY 852 (877)
Q Consensus 776 E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~---~~~~~Y 852 (877)
.|+.|+..+.|+|++.|+++|+|||||||||.++...+.|+.+.|+||++.|||++|+.... ..+..|
T Consensus 313 ---------~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y 383 (440)
T cd02669 313 ---------DGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKY 383 (440)
T ss_pred ---------CCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceE
Confidence 57788888999999999999999999999999988778999999999987799999996432 356899
Q ss_pred EEEEEEEeeccC-CCCcEEEEEEeC
Q 002810 853 DLFAISNHYGGL-GGGHYTAYAKVN 876 (877)
Q Consensus 853 dL~AVinH~G~l-~gGHYtAy~k~~ 876 (877)
+|+|||+|.|++ ++|||+||+|+.
T Consensus 384 ~L~avI~H~G~~~~sGHY~a~v~~~ 408 (440)
T cd02669 384 NLVANIVHEGTPQEDGTWRVQLRHK 408 (440)
T ss_pred EEEEEEEEeccCCCCeeEEEEEEcC
Confidence 999999999987 999999999963
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.1e-50 Score=441.47 Aligned_cols=245 Identities=33% Similarity=0.528 Sum_probs=211.7
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHH-HHHHHhhh
Q 002810 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA-FKGKLARF 399 (877)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~-~~~~l~~~ 399 (877)
||.|+||||||||+||||+|+|+||+++++...... .....+..+|+.|+..|..+...++.|.. |+.++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999987522111 11234778888998888776667777776 666543
Q ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEEcC
Q 002810 400 APQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 479 (877)
Q Consensus 400 ~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C~ 479 (877)
.+.|..++||||||||.+|||.|+ ++|.++|+|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~--------------------------------------~~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH--------------------------------------HHHHhhCcEEeEeEEEcC
Confidence 478999999999999999999998 137889999999999999
Q ss_pred CCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCC
Q 002810 480 VCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH 559 (877)
Q Consensus 480 ~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~ 559 (877)
.|++++.+.|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999999764
Q ss_pred ceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHHHH
Q 002810 560 QIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDI 639 (877)
Q Consensus 560 ~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~~~ 639 (877)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCCCC
Q 002810 640 AVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKP 719 (877)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (877)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEE
Q 002810 720 GKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKL 799 (877)
Q Consensus 720 ~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~ 799 (877)
+|++||+.|+++|.|.++|.|+|++|++++.|+|++
T Consensus 135 --------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~ 170 (327)
T cd02664 135 --------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEM 170 (327)
T ss_pred --------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEE
Confidence 478999999999999999999999999999999999
Q ss_pred EeecCCCeEEEEEeceeecC--CcccccceeEeccCCCCCcccccccC-------------------CCCCceEEEEEEE
Q 002810 800 DLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSK-------------------DGESYVYDLFAIS 858 (877)
Q Consensus 800 ~i~~lP~iLiihLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~v~~~-------------------~~~~~~YdL~AVi 858 (877)
.|.++|+|||||||||.|+. +.+.||++.|.|| +.|||..|+... ...+..|+|+|||
T Consensus 171 ~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi 249 (327)
T cd02664 171 KVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVV 249 (327)
T ss_pred EcccCChhhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceEEEEEEE
Confidence 99999999999999999975 3568999999999 589999997421 1245789999999
Q ss_pred Eeec-cCCCCcEEEEEEeC
Q 002810 859 NHYG-GLGGGHYTAYAKVN 876 (877)
Q Consensus 859 nH~G-~l~gGHYtAy~k~~ 876 (877)
+|.| ++.+||||||+|..
T Consensus 250 ~H~G~~~~~GHY~a~~r~~ 268 (327)
T cd02664 250 VHSGYSSESGHYFTYARDQ 268 (327)
T ss_pred EEccCCCCCcceEEEEecC
Confidence 9999 69999999999974
No 12
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-51 Score=467.57 Aligned_cols=307 Identities=42% Similarity=0.668 Sum_probs=262.9
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcC-CCCccChHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS-GRAAVAPRA 391 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~-~~~~i~p~~ 391 (877)
....|++||.|+|||||||++||||+.++.||..|+.. |.+.++.++.. ....+..++..++..+|.. ...++.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFF-GAEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcc-cchhHHHHHHHhhhhhccCCCceecCcHH
Confidence 34578999999999999999999999999999888877 88877744433 3446777777777777765 677899999
Q ss_pred HHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCC-cccc-----cCCCCCChHHHhHHHHhhccccCCCccc
Q 002810 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKP-YIEM-----KDSGGRPDEEVANECWKNHKARNDSLIV 465 (877)
Q Consensus 392 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~-~~e~-----~~~~~~~~~~~a~~~w~~~~~~~~sii~ 465 (877)
|+..++++.|.|.++.|||||||+.+++|.||++++.....+ .... .......+...+...|..+....++.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 999999999999999999999999999999999999865421 1111 1111223445566789998888888899
Q ss_pred cceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCC
Q 002810 466 DVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL 545 (877)
Q Consensus 466 ~lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~ 545 (877)
++|.||+++.++|..|++.|.+|++|++|+||||.....
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~----------------------------------------- 493 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA----------------------------------------- 493 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccccccc-----------------------------------------
Confidence 999999999999999999999999999999999854300
Q ss_pred CCCCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEE
Q 002810 546 KIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVT 625 (877)
Q Consensus 546 ~~~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~ 625 (877)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCC
Q 002810 626 YLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERI 705 (877)
Q Consensus 626 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (877)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCcc
Q 002810 706 SSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWY 785 (877)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~ 785 (877)
...++|.+|++.|++.|.|+++++|.
T Consensus 494 ------------------------------------------------------~~~~~L~~C~~~ft~~ekle~~~~w~ 519 (653)
T KOG1868|consen 494 ------------------------------------------------------GGKVSLEDCLSLFTKEEKLEGDEAWL 519 (653)
T ss_pred ------------------------------------------------------ccccchHhhhccccchhhcccccccC
Confidence 01248999999999999999999999
Q ss_pred CCCCCccceeE--EEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeecc
Q 002810 786 CPQCKEHRQAT--KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 863 (877)
Q Consensus 786 C~~Ck~~~~a~--K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~ 863 (877)
||+|++.+.++ |++.||++|+|||||||||.+++....|....|+||+..+|+.+++....+....|+||||++|+|+
T Consensus 520 Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt 599 (653)
T KOG1868|consen 520 CPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT 599 (653)
T ss_pred CccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc
Confidence 99999999886 9999999999999999999999878899999999999999999988888777788999999999999
Q ss_pred CCCCcEEEEEEeC
Q 002810 864 LGGGHYTAYAKVN 876 (877)
Q Consensus 864 l~gGHYtAy~k~~ 876 (877)
+.||||||||+.+
T Consensus 600 l~sGHYta~~~~~ 612 (653)
T KOG1868|consen 600 LNSGHYTAYVYKN 612 (653)
T ss_pred ccCCceEEEEeec
Confidence 9999999999764
No 13
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-48 Score=427.42 Aligned_cols=256 Identities=29% Similarity=0.404 Sum_probs=220.3
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhc
Q 002810 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (877)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 400 (877)
||.|+||||||||+||||+|+|+|+++++..-... .+......+++++|+.|+..|+.+. .+++|..|+..+++..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPAR---RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccc---cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998752110 0122345689999999999999854 4899999999999999
Q ss_pred CCCC------CCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEE
Q 002810 401 PQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (877)
Q Consensus 401 ~~F~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 474 (877)
+.|. +++||||||||.+|||.||++++.. ..+.++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 4599999999999999999997541 12356799999999999
Q ss_pred EEEcCCCC-CeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEE
Q 002810 475 TLVCPVCS-KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (877)
Q Consensus 475 ~~~C~~C~-~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 553 (877)
+++|..|+ ..+.++|+|++|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999997431
Q ss_pred EEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCC
Q 002810 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (877)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~ 633 (877)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCcc
Q 002810 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (877)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (877)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccc
Q 002810 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (877)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (877)
...+|++||+.++++|.. ..|+.|+...
T Consensus 158 -----------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~ 185 (305)
T cd02657 158 -----------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSPTLGRDA 185 (305)
T ss_pred -----------------------------------------------ccccHHHHHHHhhhhhhh-----hcCcccCCCc
Confidence 001799999999987764 5799999999
Q ss_pred eeEEEEEeecCCCeEEEEEeceeecCC--cccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cCCCCcEE
Q 002810 794 QATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYT 870 (877)
Q Consensus 794 ~a~K~~~i~~lP~iLiihLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l~gGHYt 870 (877)
.++|+..|.++|++||||||||.|+.. ...|+++.|.|| ..|||++|+. .+..|+|+|||+|.| ++.+|||+
T Consensus 186 ~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~----~~~~Y~L~~vI~H~G~~~~~GHY~ 260 (305)
T cd02657 186 IYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYELCT----PSGYYELVAVITHQGRSADSGHYV 260 (305)
T ss_pred eEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECC-ceEecccccC----CCCcEEEEEEEEecCCCCCCcEEE
Confidence 999999999999999999999999754 467999999999 5899999987 347899999999999 79999999
Q ss_pred EEEEeC
Q 002810 871 AYAKVN 876 (877)
Q Consensus 871 Ay~k~~ 876 (877)
||+|..
T Consensus 261 ~~~~~~ 266 (305)
T cd02657 261 AWVRRK 266 (305)
T ss_pred EEEEcC
Confidence 999975
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-48 Score=426.98 Aligned_cols=261 Identities=30% Similarity=0.475 Sum_probs=216.4
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCC--------------CCc
Q 002810 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------------RAA 386 (877)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------------~~~ 386 (877)
||.|+||||||||+||||+|+|+||++|+....... ........++.++|+.|+..|+++. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999999999999999999999999986311111 1122335679999999999998743 346
Q ss_pred cChHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCcccc
Q 002810 387 VAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVD 466 (877)
Q Consensus 387 i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~ 466 (877)
++|..|+.+++...|.|.+++||||||||.+|||.||+++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 8999999999999999999999999999999999999987421 1234788
Q ss_pred ceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCC
Q 002810 467 VFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 546 (877)
Q Consensus 467 lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (877)
+|+|.++++++|..|++.+.+.|+|.+|+|+||......
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~----------------------------------------- 167 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATE----------------------------------------- 167 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccc-----------------------------------------
Confidence 999999999999999999999999999999998643100
Q ss_pred CCCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEE
Q 002810 547 IDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTY 626 (877)
Q Consensus 547 ~~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~ 626 (877)
.. +
T Consensus 168 -~~-----------------~----------------------------------------------------------- 170 (311)
T cd02658 168 -KE-----------------E----------------------------------------------------------- 170 (311)
T ss_pred -cc-----------------c-----------------------------------------------------------
Confidence 00 0
Q ss_pred ecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCC
Q 002810 627 LEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERIS 706 (877)
Q Consensus 627 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (877)
T Consensus 171 -------------------------------------------------------------------------------- 170 (311)
T cd02658 171 -------------------------------------------------------------------------------- 170 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccC
Q 002810 707 SCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 786 (877)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C 786 (877)
........+|++||+.|+.+|.+. ++|
T Consensus 171 -------------------------------------------------~~~~~~~~sl~~~L~~~~~~e~i~----~~C 197 (311)
T cd02658 171 -------------------------------------------------GELVYEPVPLEDCLKAYFAPETIE----DFC 197 (311)
T ss_pred -------------------------------------------------ccccCCCCCHHHHHHHHcCccccc----ccc
Confidence 000012459999999999999995 589
Q ss_pred CCCCccceeEEEEEeecCCCeEEEEEeceeec-CCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cC
Q 002810 787 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS-RYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GL 864 (877)
Q Consensus 787 ~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~-~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l 864 (877)
+.|++++.|+|+..|.++|+|||||||||.++ .+...|++..|.|| ..| .+..|+|+|||+|.| ++
T Consensus 198 ~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p-~~l-----------~~~~Y~L~~vI~H~G~~~ 265 (311)
T cd02658 198 STCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVP-EEL-----------GPGKYELIAFISHKGTSV 265 (311)
T ss_pred cCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccC-CcC-----------CCCcEEEEEEEEccCCCC
Confidence 99999999999999999999999999999995 56678999999999 455 236799999999999 69
Q ss_pred CCCcEEEEEEeC
Q 002810 865 GGGHYTAYAKVN 876 (877)
Q Consensus 865 ~gGHYtAy~k~~ 876 (877)
++||||||+|.+
T Consensus 266 ~~GHY~~~vk~~ 277 (311)
T cd02658 266 HSGHYVAHIKKE 277 (311)
T ss_pred CCcceEEEEeCC
Confidence 999999999975
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-48 Score=425.19 Aligned_cols=270 Identities=35% Similarity=0.582 Sum_probs=234.4
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHh
Q 002810 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 397 (877)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 397 (877)
++||.|+||||||||+||+|+|+|+|+++++.. ..... .....++.++|..++..|+.+....+.|..|..++.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~ 75 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC-----CNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLK 75 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc-----cCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHH
Confidence 589999999999999999999999999999864 21111 112346899999999999988888999999999999
Q ss_pred hhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEE
Q 002810 398 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477 (877)
Q Consensus 398 ~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~ 477 (877)
...+.|..+.||||+|||.+|||.||+++......... ........++|.++|+|+++++++
T Consensus 76 ~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~ 137 (304)
T cd02661 76 QISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVK 137 (304)
T ss_pred HHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEE
Confidence 99999999999999999999999999887543321100 011233467899999999999999
Q ss_pred cCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEe
Q 002810 478 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY 557 (877)
Q Consensus 478 C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~ 557 (877)
|..|++.+.++|+|+.|+|+||..
T Consensus 138 C~~C~~~s~~~e~~~~l~l~i~~~-------------------------------------------------------- 161 (304)
T cd02661 138 CLNCKHVSNTYDPFLDLSLDIKGA-------------------------------------------------------- 161 (304)
T ss_pred eCCCCCCcCccccceeeeeecCCC--------------------------------------------------------
Confidence 999999999999999999998621
Q ss_pred CCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHH
Q 002810 558 NHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADI 637 (877)
Q Consensus 558 ~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~ 637 (877)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCC
Q 002810 638 DIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL 717 (877)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (877)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEE
Q 002810 718 KPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATK 797 (877)
Q Consensus 718 ~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K 797 (877)
.+|++||+.|+.+|.+++++.|+|++|++.+.+.|
T Consensus 162 ---------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~ 196 (304)
T cd02661 162 ---------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASK 196 (304)
T ss_pred ---------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEE
Confidence 17899999999999999999999999999999999
Q ss_pred EEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cCCCCcEEEEEEe
Q 002810 798 KLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAYAKV 875 (877)
Q Consensus 798 ~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~ 875 (877)
+..|.++|++|+|||+||.+. ...|+++.|.|| +.|||.+|+.........|+|+|||+|.| ++++|||+||+|.
T Consensus 197 ~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~ 272 (304)
T cd02661 197 QLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS 272 (304)
T ss_pred EEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC
Confidence 999999999999999999998 568999999999 58999999987666778999999999999 4599999999996
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.4e-47 Score=420.46 Aligned_cols=263 Identities=30% Similarity=0.488 Sum_probs=222.7
Q ss_pred CccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHh
Q 002810 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 397 (877)
Q Consensus 318 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 397 (877)
|++||.|+||||||||+||||+|+|+|+++++..... .......++.++|+.|+..|+.+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-----ccCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 7899999999999999999999999999999875211 01112456899999999999987766677766542222
Q ss_pred hhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEE
Q 002810 398 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477 (877)
Q Consensus 398 ~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~ 477 (877)
...+.|..++||||||||.+||+.|++++... ...++|.++|+|.+.++++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 22356888999999999999999999987421 1235689999999999999
Q ss_pred cCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEe
Q 002810 478 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY 557 (877)
Q Consensus 478 C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~ 557 (877)
|..|++.+.+.++|+.|+|++|..
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~~-------------------------------------------------------- 150 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKGK-------------------------------------------------------- 150 (334)
T ss_pred ecCCCceecccccceEEEEEcCCC--------------------------------------------------------
Confidence 999999999999999999988621
Q ss_pred CCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHH
Q 002810 558 NHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADI 637 (877)
Q Consensus 558 ~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~ 637 (877)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCC
Q 002810 638 DIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL 717 (877)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (877)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEE
Q 002810 718 KPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATK 797 (877)
Q Consensus 718 ~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K 797 (877)
.+|++||+.|+.+|.+.++|.|+|++|++.+.|.|
T Consensus 151 ---------------------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k 185 (334)
T cd02659 151 ---------------------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEK 185 (334)
T ss_pred ---------------------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEE
Confidence 17899999999999999999999999999999999
Q ss_pred EEEeecCCCeEEEEEeceeecC--CcccccceeEeccCCCCCcccccccCC-----------CCCceEEEEEEEEeeccC
Q 002810 798 KLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-----------GESYVYDLFAISNHYGGL 864 (877)
Q Consensus 798 ~~~i~~lP~iLiihLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~v~~~~-----------~~~~~YdL~AVinH~G~l 864 (877)
+..|.++|++|+|||+||.++. ..+.|+++.|+|| ..|||++|+.... .....|+|+|||+|.|+.
T Consensus 186 ~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~ 264 (334)
T cd02659 186 GVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDA 264 (334)
T ss_pred EEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEEEecCCC
Confidence 9999999999999999999864 4578999999999 5899999987532 245789999999999999
Q ss_pred CCCcEEEEEEeC
Q 002810 865 GGGHYTAYAKVN 876 (877)
Q Consensus 865 ~gGHYtAy~k~~ 876 (877)
.+|||+||+|.+
T Consensus 265 ~~GHY~~~vk~~ 276 (334)
T cd02659 265 HGGHYYSYIKDR 276 (334)
T ss_pred CCCCeEEEEECC
Confidence 999999999974
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-42 Score=365.44 Aligned_cols=90 Identities=33% Similarity=0.616 Sum_probs=82.5
Q ss_pred CHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecC-CcccccceeEeccCCCCCccccc
Q 002810 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKYM 842 (877)
Q Consensus 764 sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~v 842 (877)
+|++||+.|+.+|.+++ |.|++| +..|.++|+|||||||||.++. +...|+++.|.||. .|
T Consensus 97 sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l------ 158 (240)
T cd02662 97 TLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL------ 158 (240)
T ss_pred CHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc------
Confidence 89999999999999965 899999 6789999999999999999987 77889999999994 66
Q ss_pred ccCCCCCceEEEEEEEEeeccCCCCcEEEEEEeC
Q 002810 843 KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKVN 876 (877)
Q Consensus 843 ~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~ 876 (877)
....|+|+|||+|.|+..+|||+||+|.+
T Consensus 159 -----~~~~Y~L~avi~H~G~~~~GHY~~~~k~~ 187 (240)
T cd02662 159 -----PKVLYRLRAVVVHYGSHSSGHYVCYRRKP 187 (240)
T ss_pred -----CCceEEEEEEEEEeccCCCceEEEEEeCC
Confidence 34789999999999988999999999975
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-39 Score=341.41 Aligned_cols=114 Identities=52% Similarity=0.929 Sum_probs=105.0
Q ss_pred CCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCccccc
Q 002810 763 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYM 842 (877)
Q Consensus 763 ~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v 842 (877)
.+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|++|+|||+||.+..+...|+++.|.||.+.|||++|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 38999999999999999999999999999999999999999999999999999999888899999999998789999986
Q ss_pred ccC-CCCCceEEEEEEEEeeccCCCCcEEEEEEeC
Q 002810 843 KSK-DGESYVYDLFAISNHYGGLGGGHYTAYAKVN 876 (877)
Q Consensus 843 ~~~-~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~ 876 (877)
... ......|+|+|||.|.|..++|||+||+|.+
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~ 198 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNN 198 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECC
Confidence 322 2356889999999999977999999999975
No 19
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-40 Score=369.05 Aligned_cols=155 Identities=37% Similarity=0.644 Sum_probs=119.1
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCc---ccc--C-------CCCCchhHHHHHHHHHHHHHhc
Q 002810 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDE---INT--E-------NPLGMHGELALAFGDLLRKLWS 381 (877)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~---~~~--~-------~~~~~~~~l~~~l~~L~~~l~~ 381 (877)
...-.+||.|||||||+|||||+|+.+|.||+.|... +... +.+ . ..+...+.++.+|+. +..|..
T Consensus 201 ~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e 279 (877)
T KOG1873|consen 201 RGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSE 279 (877)
T ss_pred ccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhh
Confidence 3455799999999999999999999999999999865 3211 000 0 012335678888888 556777
Q ss_pred CCCCccChHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCC
Q 002810 382 SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARND 461 (877)
Q Consensus 382 ~~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~ 461 (877)
+..++++|+.|...+...+|+|.||.||||||+|++|||.|..|-.+..++-
T Consensus 280 ~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~---------------------------- 331 (877)
T KOG1873|consen 280 TTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKN---------------------------- 331 (877)
T ss_pred ccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHh----------------------------
Confidence 7899999999999999999999999999999999999999995543333221
Q ss_pred CccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCC
Q 002810 462 SLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPS 500 (877)
Q Consensus 462 sii~~lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~ 500 (877)
|...|+|...+...|.+|++.+..+++|..++|++|.
T Consensus 332 --Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~ 368 (877)
T KOG1873|consen 332 --ILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPL 368 (877)
T ss_pred --HHHhhCccccchhhhhhccchhhcccccccCCccccc
Confidence 5566777777777777777777777777777777763
No 20
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=358.71 Aligned_cols=155 Identities=28% Similarity=0.495 Sum_probs=132.2
Q ss_pred cCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCC--------
Q 002810 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGR-------- 384 (877)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-------- 384 (877)
+...+|.+||+|+||+||||||||+|+++|.|...++.. ..+-...+.....++.+++.+|+..|.++..
T Consensus 301 p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~--~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~ 378 (763)
T KOG0944|consen 301 PLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ--ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPS 378 (763)
T ss_pred cccCCCccceeecCcchhHHHHHHHheecccHHHhhccc--cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCcc
Confidence 366899999999999999999999999999999988765 2222333445567899999999999988652
Q ss_pred --CccChHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCC
Q 002810 385 --AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 462 (877)
Q Consensus 385 --~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s 462 (877)
..|+|..|+..+++.+|.|+.++||||+|||++||+.|.+..... -.
T Consensus 379 ~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~-------------------------------~~ 427 (763)
T KOG0944|consen 379 NQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS-------------------------------LP 427 (763)
T ss_pred ccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-------------------------------CC
Confidence 368999999999999999999999999999999999998653110 02
Q ss_pred ccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCC
Q 002810 463 LIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPS 500 (877)
Q Consensus 463 ii~~lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~ 500 (877)
-+.++|...+..++.|..|++++.++++-+.|.||||.
T Consensus 428 nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 428 NPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred CHHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 37899999999999999999999999999999999984
No 21
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=361.47 Aligned_cols=290 Identities=33% Similarity=0.618 Sum_probs=240.8
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCc-hhHHHHHHHHHHHHHhcCC-CCccChHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGM-HGELALAFGDLLRKLWSSG-RAAVAPRA 391 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~-~~~l~~~l~~L~~~l~~~~-~~~i~p~~ 391 (877)
...-|+.||.|+|||||||++||+|.|.+..+...+...+. ..+... ..++.+++..++..+|++. ..+++|..
T Consensus 156 ~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~----~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~ 231 (492)
T KOG1867|consen 156 TTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHS----KEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFE 231 (492)
T ss_pred eeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcc----cCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHH
Confidence 34568999999999999999999999999999998877443 112222 4579999999999999999 89999999
Q ss_pred HHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEE
Q 002810 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (877)
Q Consensus 392 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~ 471 (877)
+...+++..|.|.+++|||||||+..+++.+|.+.....+.... . .|. +.-.+++...|.|+
T Consensus 232 ~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~---~------------~~~---~~c~~iv~~~F~G~ 293 (492)
T KOG1867|consen 232 LLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIA---S------------QSN---KQCPCIVHTIFSGT 293 (492)
T ss_pred HHHHHHHhCcccccccccchHHHHHHhccccccccccccccccc---c------------cCC---cccccccceeecce
Confidence 99999999999999999999999999999999886111111100 0 000 01267899999999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcE
Q 002810 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 551 (877)
Q Consensus 472 ~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 551 (877)
+.+.++|..|+..|.+++||++|+|.||......
T Consensus 294 L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~---------------------------------------------- 327 (492)
T KOG1867|consen 294 LQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSS---------------------------------------------- 327 (492)
T ss_pred eccceeehhhcceeeeccCccceeeecchhccCc----------------------------------------------
Confidence 9999999999999999999999999998542000
Q ss_pred EEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCC
Q 002810 552 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 631 (877)
Q Consensus 552 ~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~ 631 (877)
+.
T Consensus 328 -------------~~----------------------------------------------------------------- 329 (492)
T KOG1867|consen 328 -------------SV----------------------------------------------------------------- 329 (492)
T ss_pred -------------cc-----------------------------------------------------------------
Confidence 00
Q ss_pred CCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCC
Q 002810 632 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 711 (877)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (877)
T Consensus 330 -------------------------------------------------------------------------------- 329 (492)
T KOG1867|consen 330 -------------------------------------------------------------------------------- 329 (492)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCc
Q 002810 712 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 791 (877)
Q Consensus 712 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~ 791 (877)
.....++.+|++.|+.-|.++......|..|+.
T Consensus 330 -----------------------------------------------~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~ 362 (492)
T KOG1867|consen 330 -----------------------------------------------RSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKS 362 (492)
T ss_pred -----------------------------------------------ccchhhhhhhhhhhhhhhhcCcccccccCCccc
Confidence 000127999999999999999999999999999
Q ss_pred cceeEEEEEeecCCCeEEEEEeceeecCCccc-ccceeEeccCCCCCcccccccC---C--CCCceEEEEEEEEeeccCC
Q 002810 792 HRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN-KLDTFVNFPILNLDLSKYMKSK---D--GESYVYDLFAISNHYGGLG 865 (877)
Q Consensus 792 ~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~-Ki~~~V~FPl~~LDls~~v~~~---~--~~~~~YdL~AVinH~G~l~ 865 (877)
.+.++|++.|-++|.+|.+|||||.+...... |++++|.|| ..|+|.+|+..+ . ..+..|+|+|||+|.|+++
T Consensus 363 ~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~ 441 (492)
T KOG1867|consen 363 KQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVG 441 (492)
T ss_pred ccccccccccccCCceeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEEeccCCC
Confidence 99999999999999999999999999865433 999999999 599999999852 1 1468899999999999999
Q ss_pred CCcEEEEEEeCC
Q 002810 866 GGHYTAYAKVNA 877 (877)
Q Consensus 866 gGHYtAy~k~~~ 877 (877)
+||||||+|+.+
T Consensus 442 SGHY~aY~r~~~ 453 (492)
T KOG1867|consen 442 SGHYVAYRRQSG 453 (492)
T ss_pred CCceEEEEEeCC
Confidence 999999999753
No 22
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.8e-37 Score=338.51 Aligned_cols=159 Identities=27% Similarity=0.352 Sum_probs=123.6
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhcC-c-Cccc----cCCCC----------CchhHHHHHHHHHHHHHhcC
Q 002810 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDY-S-DEIN----TENPL----------GMHGELALAFGDLLRKLWSS 382 (877)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~-~-~~~~----~~~~~----------~~~~~l~~~l~~L~~~l~~~ 382 (877)
|+||.|+||||||||+||||+++|+||++++..- . .+.. ..... .....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 6999999999999999999999999999998741 1 0000 00000 01236999999999999998
Q ss_pred CCCccChHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCC
Q 002810 383 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 462 (877)
Q Consensus 383 ~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s 462 (877)
...++.|..++..+.. .||||+||+..||+.||++++.....+.. ++. .......+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~--------~~~--------~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG--------PDT--------EDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC--------ccc--------ccccchhh
Confidence 8899999999886642 89999999999999999998754322110 000 00123467
Q ss_pred ccccceeEEEEEEEEcCCCC---CeeeeecCCeeEeecCCCC
Q 002810 463 LIVDVFQGQYKSTLVCPVCS---KVSITFDPFMYLTLPLPST 501 (877)
Q Consensus 463 ii~~lF~G~~~s~~~C~~C~---~~s~~~e~f~~LsL~ip~~ 501 (877)
+|.++|.|+++++++|..|+ ..+.+.|+|++|+|+|+.+
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~ 178 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKK 178 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcc
Confidence 89999999999999999997 8899999999999999754
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-36 Score=311.91 Aligned_cols=94 Identities=28% Similarity=0.391 Sum_probs=82.2
Q ss_pred CHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccc
Q 002810 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 843 (877)
Q Consensus 764 sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~ 843 (877)
+|++||+.|+.+|.+.+++.++ .+.+.|+..|+++|+|||||||||.++...+.|+++.|+||+ .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 7999999999999998765433 345778888999999999999999998877899999999995 55
Q ss_pred cCCCCCceEEEEEEEEeeccCCCCcEEEEEEe
Q 002810 844 SKDGESYVYDLFAISNHYGGLGGGHYTAYAKV 875 (877)
Q Consensus 844 ~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~ 875 (877)
....|+|+||++|.|++++|||+||+|.
T Consensus 160 ----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~ 187 (228)
T cd02665 160 ----QQVPYELHAVLVHEGQANAGHYWAYIYK 187 (228)
T ss_pred ----CCceeEEEEEEEecCCCCCCEEEEEEEc
Confidence 2367999999999999999999999985
No 24
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=5.3e-36 Score=321.26 Aligned_cols=147 Identities=41% Similarity=0.759 Sum_probs=120.2
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcC--CCCccChHHHHHH
Q 002810 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS--GRAAVAPRAFKGK 395 (877)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~i~p~~~~~~ 395 (877)
++||.|.||||||||+||||+++|+|+++++.. +....+..++......+..+|+.|+..|+.. ....+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999864 2222344455555667999999999999997 6789999999999
Q ss_pred HhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEE
Q 002810 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (877)
Q Consensus 396 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 475 (877)
++...+.|..++||||+|||..||+.|++++..... ...|........+++.++|.|++.+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999999754321 22345555667788889999999999
Q ss_pred EEcCCCCC
Q 002810 476 LVCPVCSK 483 (877)
Q Consensus 476 ~~C~~C~~ 483 (877)
+.|..|+.
T Consensus 143 ~~c~~c~~ 150 (269)
T PF00443_consen 143 IKCSSCKN 150 (269)
T ss_dssp EEETTTTC
T ss_pred cccccccc
Confidence 88888773
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.1e-36 Score=315.08 Aligned_cols=97 Identities=26% Similarity=0.375 Sum_probs=78.8
Q ss_pred CHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccc
Q 002810 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 843 (877)
Q Consensus 764 sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~ 843 (877)
+|++|++.|.++|.++ |.|++|+.. .|.|+..|+++|+||+||||||.+.. ++...+.. ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 5788888888877763 899999875 89999999999999999999997643 23333333 3577888775
Q ss_pred cCCCCCceEEEEEEEEeec-cCCCCcEEEEEEe
Q 002810 844 SKDGESYVYDLFAISNHYG-GLGGGHYTAYAKV 875 (877)
Q Consensus 844 ~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~ 875 (877)
....|+|+|||+|.| ++++||||||+|.
T Consensus 180 ----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~ 208 (245)
T cd02673 180 ----TDAKYSLVAVICHLGESPYDGHYIAYTKE 208 (245)
T ss_pred ----CCceEEEEEEEEECCCCCCCceEEEEEEc
Confidence 346799999999999 5999999999996
No 26
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=343.18 Aligned_cols=267 Identities=27% Similarity=0.458 Sum_probs=232.1
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCC-chhHHHHHHHHHHHHHhcCCCCccChHHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLG-MHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~-~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 392 (877)
....|+|||.|-|+|||||+++|-|.++|.++.-++..+.. ++++.. -...+.+.++.+|..+..+.-.++.|..|
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 45678999999999999999999999999999988765433 222221 12238999999999999988899999999
Q ss_pred HHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEE
Q 002810 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (877)
Q Consensus 393 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~ 472 (877)
.+.++-........+||||-||+..|||.+++.|+.+...+ ++...|+|.+
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~-----------------------------lf~n~f~G~y 217 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQ-----------------------------LFSNTFGGSY 217 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcH-----------------------------HHHHHhcCcc
Confidence 99887666566678999999999999999999997755332 4778899999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEE
Q 002810 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (877)
Q Consensus 473 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 552 (877)
..+-+|..|-+.-...|+|++|+|.|..
T Consensus 218 sdqKIC~~CpHRY~~eE~F~~l~l~i~~---------------------------------------------------- 245 (944)
T KOG1866|consen 218 SDQKICQGCPHRYECEESFTTLNLDIRH---------------------------------------------------- 245 (944)
T ss_pred chhhhhccCCcccCccccceeeeeeccc----------------------------------------------------
Confidence 9999999999999999999999997630
Q ss_pred EEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCC
Q 002810 553 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 632 (877)
Q Consensus 553 ~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~ 632 (877)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCc
Q 002810 633 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 712 (877)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (877)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcc
Q 002810 713 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 792 (877)
Q Consensus 713 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~ 792 (877)
-+|++.|+.|.+.|.|.|.|+|+|++|+++
T Consensus 246 --------------------------------------------------~nLeesLeqfv~gevlEG~nAYhCeKCdeK 275 (944)
T KOG1866|consen 246 --------------------------------------------------QNLEESLEQFVKGEVLEGANAYHCEKCDEK 275 (944)
T ss_pred --------------------------------------------------chHHHHHHHHHHHHHhcCcchhhhhhhhhh
Confidence 079999999999999999999999999999
Q ss_pred ceeEEEEEeecCCCeEEEEEeceeec--CCcccccceeEeccCCCCCcccccccCC-----------------CCCceEE
Q 002810 793 RQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSKD-----------------GESYVYD 853 (877)
Q Consensus 793 ~~a~K~~~i~~lP~iLiihLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~v~~~~-----------------~~~~~Yd 853 (877)
+...|++.|.+||.+|+||||||.|+ +....|-+..+.|| ..|||.||....- .+..+|+
T Consensus 276 ~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~Ye 354 (944)
T KOG1866|consen 276 VDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYE 354 (944)
T ss_pred hHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccCcceeE
Confidence 99999999999999999999999996 56678999999999 6999999997531 1568999
Q ss_pred EEEEEEeeccCCCCcEEEEEEe
Q 002810 854 LFAISNHYGGLGGGHYTAYAKV 875 (877)
Q Consensus 854 L~AVinH~G~l~gGHYtAy~k~ 875 (877)
|.||++|.|-..+|||.+|+|.
T Consensus 355 LvGVlvHSGqAsaGHYySfIk~ 376 (944)
T KOG1866|consen 355 LVGVLVHSGQASAGHYYSFIKQ 376 (944)
T ss_pred EEEEEEecccccCcchhhhhhh
Confidence 9999999999999999999974
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-35 Score=324.59 Aligned_cols=260 Identities=28% Similarity=0.453 Sum_probs=221.9
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (877)
....|.+||+|.|.||||||.||+|+.+..||+.+.. +.+++|.+ +..++.||+.+|..|.. ...+++..+|.
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~-----ipTd~p~g-rdSValaLQr~Fynlq~-~~~PvdTtelt 260 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYG-----IPTDHPRG-RDSVALALQRLFYNLQT-GEEPVDTTELT 260 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhc-----CCCCCCCc-cchHHHHHHHHHHHHhc-cCCCcchHHhh
Confidence 4568999999999999999999999999999998854 44455544 34689999999999987 67899999998
Q ss_pred HHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEE
Q 002810 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (877)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (877)
...+.. .+..+.|||.|||=..|.|.|+..++.... ..-+..+|-|.++
T Consensus 261 rsfgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt~V-----------------------------Enaln~ifVgkmk 309 (1089)
T COG5077 261 RSFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGTVV-----------------------------ENALNGIFVGKMK 309 (1089)
T ss_pred hhcCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCChh-----------------------------hhHHhHHHHHHhh
Confidence 887753 466789999999999999999976532111 0127789999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEE
Q 002810 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (877)
Q Consensus 474 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 553 (877)
+.+.|-+-.++|.+.|.|+++.|++...
T Consensus 310 syikCvnvnyEsarvedfwdiqlNvK~~---------------------------------------------------- 337 (1089)
T COG5077 310 SYIKCVNVNYESARVEDFWDIQLNVKGM---------------------------------------------------- 337 (1089)
T ss_pred ceeeEEEechhhhhHHHHHHHHhcccch----------------------------------------------------
Confidence 9999999999998888888888865311
Q ss_pred EEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCC
Q 002810 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (877)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~ 633 (877)
T Consensus 338 -------------------------------------------------------------------------------- 337 (1089)
T COG5077 338 -------------------------------------------------------------------------------- 337 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCcc
Q 002810 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (877)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (877)
T Consensus 338 -------------------------------------------------------------------------------- 337 (1089)
T COG5077 338 -------------------------------------------------------------------------------- 337 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccc
Q 002810 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (877)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (877)
-+|+|.++.|.+.|.|+|+|.|+|..- ..|
T Consensus 338 -------------------------------------------------knLqeSfr~yIqvE~l~GdN~Y~ae~~-Glq 367 (1089)
T COG5077 338 -------------------------------------------------KNLQESFRRYIQVETLDGDNRYNAEKH-GLQ 367 (1089)
T ss_pred -------------------------------------------------hhHHHHHHHhhhheeccCCcccccccc-cch
Confidence 179999999999999999999999875 579
Q ss_pred eeEEEEEeecCCCeEEEEEeceeec--CCcccccceeEeccCCCCCcccccccCCC----CCceEEEEEEEEeeccCCCC
Q 002810 794 QATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSKDG----ESYVYDLFAISNHYGGLGGG 867 (877)
Q Consensus 794 ~a~K~~~i~~lP~iLiihLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~v~~~~~----~~~~YdL~AVinH~G~l~gG 867 (877)
.|.|-+-+.++|+||-+|||||.|+ +....||++.-+||+ .+||.+|+..... ....|.||||.+|.|.+++|
T Consensus 368 dAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~-eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~G 446 (1089)
T COG5077 368 DAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL-EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEG 446 (1089)
T ss_pred hhccceeeccCchHHHHHHHHhccccccCceeeecccccCcc-hhccccccCchhhhhcccCcEEEEEEEEEeccccCCc
Confidence 9999999999999999999999986 567889999999995 8999999986432 34889999999999999999
Q ss_pred cEEEEEE
Q 002810 868 HYTAYAK 874 (877)
Q Consensus 868 HYtAy~k 874 (877)
||.|+.|
T Consensus 447 HyYallK 453 (1089)
T COG5077 447 HYYALLK 453 (1089)
T ss_pred eEEEEec
Confidence 9999998
No 28
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-34 Score=302.72 Aligned_cols=147 Identities=27% Similarity=0.405 Sum_probs=120.7
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCc-cccCCCCCchhHHHHHHHHHHHHHhcCC----CCccChHHHH
Q 002810 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDE-INTENPLGMHGELALAFGDLLRKLWSSG----RAAVAPRAFK 393 (877)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~L~~~l~~~~----~~~i~p~~~~ 393 (877)
.+||.|+||+||+||+||.|++...+...+....+.. ....+| ..++.+++.+|+..|.+.. ...++|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P---~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP---LECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC---chhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 8999999999999999999999988887765442222 222333 4579999999999998865 3568999999
Q ss_pred HHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEE
Q 002810 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (877)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (877)
..|++-+|.|..++||||||||.|||+.|.+...... .+.|.++|...+.
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~------------------------------~~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYL------------------------------IPPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhc------------------------------CCCcchhhhhhhc
Confidence 9999999999999999999999999999986543322 2448899999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecC
Q 002810 474 STLVCPVCSKVSITFDPFMYLTLPL 498 (877)
Q Consensus 474 s~~~C~~C~~~s~~~e~f~~LsL~i 498 (877)
.++.|..|+.++.++++...+.+++
T Consensus 430 ~rlsC~~C~~v~ySye~~~~i~i~l 454 (749)
T COG5207 430 RRLSCSGCMDVSYSYESMLMICIFL 454 (749)
T ss_pred ceecccccccccccccceEEEEeec
Confidence 9999999999999987766665544
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=7.5e-32 Score=285.34 Aligned_cols=109 Identities=47% Similarity=0.772 Sum_probs=97.0
Q ss_pred CHHHHHHHhcCcccCCCCCCccCCCCC--ccceeEEEEEeecCCCeEEEEEeceeecC-CcccccceeEeccCCCCCccc
Q 002810 764 SLFSCLDAFLTEEPLGPDDMWYCPQCK--EHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSK 840 (877)
Q Consensus 764 sL~dCL~~f~~~E~L~~~n~w~C~~Ck--~~~~a~K~~~i~~lP~iLiihLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~ 840 (877)
+|++||+.++..|.+.+ ..|..|+ +.+.+.++..|.++|++|+|||+||.+.. +...|++..|.|| +.|++..
T Consensus 100 ~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~~ 175 (255)
T cd02257 100 SLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLSP 175 (255)
T ss_pred cHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCcc
Confidence 89999999999999865 5788888 78999999999999999999999999987 7788999999999 6999998
Q ss_pred cccc------CCCCCceEEEEEEEEeec-cCCCCcEEEEEEeC
Q 002810 841 YMKS------KDGESYVYDLFAISNHYG-GLGGGHYTAYAKVN 876 (877)
Q Consensus 841 ~v~~------~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~ 876 (877)
++.. .......|+|+|||.|.| +.++|||+||+|..
T Consensus 176 ~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~ 218 (255)
T cd02257 176 YLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDP 218 (255)
T ss_pred ccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCC
Confidence 8753 223568899999999999 45999999999975
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3.6e-32 Score=290.28 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=94.4
Q ss_pred CCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCC----eEEEEEeceeecC-------CcccccceeEec
Q 002810 763 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPD----VLVFHLKRFSYSR-------YLKNKLDTFVNF 831 (877)
Q Consensus 763 ~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~----iLiihLKRF~~~~-------~~~~Ki~~~V~F 831 (877)
++|.+||+.|+++|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 4899999999999964 5689999999999999999999999 9999999999753 234688899999
Q ss_pred cCCCCCcccccccCCCCCceEEEEEEEEeecc-CCCCcEEEEEEeC
Q 002810 832 PILNLDLSKYMKSKDGESYVYDLFAISNHYGG-LGGGHYTAYAKVN 876 (877)
Q Consensus 832 Pl~~LDls~~v~~~~~~~~~YdL~AVinH~G~-l~gGHYtAy~k~~ 876 (877)
| ..+|+..+.........+|+|+|||+|.|. .++|||+||+|+.
T Consensus 194 ~-~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~ 238 (268)
T cd02672 194 K-AIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKV 238 (268)
T ss_pred c-ccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEcc
Confidence 9 477777766555446688999999999994 5999999999973
No 31
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.7e-33 Score=304.80 Aligned_cols=111 Identities=35% Similarity=0.629 Sum_probs=103.1
Q ss_pred CHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeec--CCcccccceeEeccCCCCCcccc
Q 002810 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKY 841 (877)
Q Consensus 764 sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~ 841 (877)
+++++|.+|.++|.|+++|.|-|++||+++.|.|-+.|...|-+|.||||||.|+ ...|.|+++.|.|| +.|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 7999999999999999999999999999999999999999999999999999876 46788999999999 89999999
Q ss_pred cccCCC------------------------------------------------------------------CCceEEEE
Q 002810 842 MKSKDG------------------------------------------------------------------ESYVYDLF 855 (877)
Q Consensus 842 v~~~~~------------------------------------------------------------------~~~~YdL~ 855 (877)
+..... ++.+|+||
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 974321 56889999
Q ss_pred EEEEeeccCCCCcEEEEEEe
Q 002810 856 AISNHYGGLGGGHYTAYAKV 875 (877)
Q Consensus 856 AVinH~G~l~gGHYtAy~k~ 875 (877)
||..|.|+..||||.||+|+
T Consensus 374 ~imihsg~a~gghy~ayik~ 393 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKN 393 (1203)
T ss_pred hhheecCCCCCceeeeeecc
Confidence 99999999999999999985
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.6e-32 Score=334.21 Aligned_cols=262 Identities=30% Similarity=0.425 Sum_probs=224.4
Q ss_pred CCCCc-cccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002810 315 EKGGL-AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (877)
Q Consensus 315 ~~~g~-~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (877)
...|. +||.|+||||||||+||+|+.++.||+.+...-. ..........+..+|+.||..|..+...+|.|..+.
T Consensus 165 ~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~ 240 (1093)
T KOG1863|consen 165 RLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELT 240 (1093)
T ss_pred hcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhh
Confidence 34565 9999999999999999999999999999976521 122223344599999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEE
Q 002810 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (877)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (877)
..++... ..+++|||+|||+..|+|.|+..+..... ...|.++|.|.++
T Consensus 241 ~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~~ 289 (1093)
T KOG1863|consen 241 KSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKMK 289 (1093)
T ss_pred hhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCcc
Confidence 9998765 55679999999999999999988743221 2348899999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEE
Q 002810 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (877)
Q Consensus 474 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 553 (877)
+.+.|..|...+.+.|.|+++.|++-..
T Consensus 290 ~~i~c~~~~~~s~r~e~f~d~ql~~~g~---------------------------------------------------- 317 (1093)
T KOG1863|consen 290 SVIKCIDVDFESSRSESFLDLQLNGKGV---------------------------------------------------- 317 (1093)
T ss_pred eEEEEEeeeeeccccccccCccccccch----------------------------------------------------
Confidence 9999999999998899998888865211
Q ss_pred EEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCC
Q 002810 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (877)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~ 633 (877)
T Consensus 318 -------------------------------------------------------------------------------- 317 (1093)
T KOG1863|consen 318 -------------------------------------------------------------------------------- 317 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCcc
Q 002810 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (877)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (877)
T Consensus 318 -------------------------------------------------------------------------------- 317 (1093)
T KOG1863|consen 318 -------------------------------------------------------------------------------- 317 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccc
Q 002810 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (877)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (877)
-+|.++|+.|++.|+|.++|. ||..|...+
T Consensus 318 -------------------------------------------------~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~ 347 (1093)
T KOG1863|consen 318 -------------------------------------------------KNLEDSLHLYFEAEILLGDNK-YDAECHGLQ 347 (1093)
T ss_pred -------------------------------------------------hhHHHHHHHhhhHHHhcCCcc-ccccccchh
Confidence 158999999999999999998 999999999
Q ss_pred eeEEEEEeecCCCeEEEEEeceeec--CCcccccceeEeccCCCCCcccccccCC----CCCceEEEEEEEEeeccCCCC
Q 002810 794 QATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSKD----GESYVYDLFAISNHYGGLGGG 867 (877)
Q Consensus 794 ~a~K~~~i~~lP~iLiihLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~v~~~~----~~~~~YdL~AVinH~G~l~gG 867 (877)
.|.|.+.+.++|+||.|||+||.|+ +....|++....|| ..|||.+|+..+. ...+.|+|+||..|.|..++|
T Consensus 348 ~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~g 426 (1093)
T KOG1863|consen 348 DAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSG 426 (1093)
T ss_pred hhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhcccccccCc
Confidence 9999999999999999999999996 56778999999999 5999999987421 133599999999998899999
Q ss_pred cEEEEEE
Q 002810 868 HYTAYAK 874 (877)
Q Consensus 868 HYtAy~k 874 (877)
||++|++
T Consensus 427 hy~~~i~ 433 (1093)
T KOG1863|consen 427 HYVAYIN 433 (1093)
T ss_pred cceeeec
Confidence 9999998
No 33
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=292.63 Aligned_cols=298 Identities=27% Similarity=0.414 Sum_probs=225.0
Q ss_pred CCCccccccCCCcchHH--HHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcC--CCCccChHH
Q 002810 316 KGGLAGLQNLGNTCFMN--SALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSS--GRAAVAPRA 391 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~i~p~~ 391 (877)
.....|..|.+++|+.| ++.|.+..+-.++...+.. .....+..+....+...+..++...... ....+.|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~ 305 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLY---LTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTR 305 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccch---hhcccchhhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence 45689999999999999 9999999888887544322 1111111122233333333333332221 245689999
Q ss_pred HHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCc--ccccCCCCCChHHHhHHHH--hhccccCCCccccc
Q 002810 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPY--IEMKDSGGRPDEEVANECW--KNHKARNDSLIVDV 467 (877)
Q Consensus 392 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~--~e~~~~~~~~~~~~a~~~w--~~~~~~~~sii~~l 467 (877)
|...+++....|..+.|||||||+.++++.++|.+.+...... +..+.++|..... +...| ..+......+++.+
T Consensus 306 ~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~-~~~~~~~~~~~~~~~~~v~~l 384 (587)
T KOG1864|consen 306 FISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTS-AASWTNKGHHKSLRENWVSKL 384 (587)
T ss_pred hhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccc-cccccccccccccchhHHHHh
Confidence 9999999999999999999999999999999988766442111 1111111111111 00001 13445566789999
Q ss_pred eeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCC
Q 002810 468 FQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI 547 (877)
Q Consensus 468 F~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 547 (877)
|.|++..+..|..|...+.+.+.|.+++++++...
T Consensus 385 f~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de--------------------------------------------- 419 (587)
T KOG1864|consen 385 FQGILTNETRCLSCETITSRDEGFLDLSVAVEIDE--------------------------------------------- 419 (587)
T ss_pred hcCeeeeeeeeccccccccccccccccceeccccc---------------------------------------------
Confidence 99999999999999999999999999998875310
Q ss_pred CCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEe
Q 002810 548 DEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYL 627 (877)
Q Consensus 548 ~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i 627 (877)
T Consensus 420 -------------------------------------------------------------------------------- 419 (587)
T KOG1864|consen 420 -------------------------------------------------------------------------------- 419 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCC
Q 002810 628 EEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISS 707 (877)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (877)
T Consensus 420 -------------------------------------------------------------------------------- 419 (587)
T KOG1864|consen 420 -------------------------------------------------------------------------------- 419 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCC
Q 002810 708 CKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCP 787 (877)
Q Consensus 708 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~ 787 (877)
..++..||+.|..+|.|.++|+++|.
T Consensus 420 ------------------------------------------------------~~si~~~l~~~~~~e~l~g~nky~c~ 445 (587)
T KOG1864|consen 420 ------------------------------------------------------NTSITNLLKSFSSTETLSGENKYSCE 445 (587)
T ss_pred ------------------------------------------------------cccHHHHHHHhcchhhccCCCccccc
Confidence 12789999999999999999999999
Q ss_pred CCCccceeEEEEEeecCCCeEEEEEeceeecCC--cccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeec-cC
Q 002810 788 QCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GL 864 (877)
Q Consensus 788 ~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G-~l 864 (877)
+|...|.|.|.+.+.++|.+|+||||||+|.+. ...|+...|.||+ .|++.............|+|+|||+|.| ++
T Consensus 446 ~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~~~~~Y~L~avVvH~G~~p 524 (587)
T KOG1864|consen 446 NCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNNPDRKYDLVAVVVHLGSTP 524 (587)
T ss_pred ccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccCccceeeEEEEEEeccCCC
Confidence 999999999999999999999999999999853 3479999999996 7888766554433347899999999999 99
Q ss_pred CCCcEEEEEEeCC
Q 002810 865 GGGHYTAYAKVNA 877 (877)
Q Consensus 865 ~gGHYtAy~k~~~ 877 (877)
..|||+||+|..+
T Consensus 525 ~~GHYia~~r~~~ 537 (587)
T KOG1864|consen 525 NRGHYVAYVKSLD 537 (587)
T ss_pred CCcceEEEEeeCC
Confidence 9999999999764
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=9.4e-27 Score=242.66 Aligned_cols=91 Identities=22% Similarity=0.441 Sum_probs=81.5
Q ss_pred CCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccc
Q 002810 762 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY 841 (877)
Q Consensus 762 ~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~ 841 (877)
.+||++||+.|++.|. |+++|+|||||||||.++.+...|+++.|+|| +.|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 3599999999999997 99999999999999999887788999999999 68999999
Q ss_pred cccCC----------------------CCCceEEEEEEEEeec-cCCCCcEEEEEEeC
Q 002810 842 MKSKD----------------------GESYVYDLFAISNHYG-GLGGGHYTAYAKVN 876 (877)
Q Consensus 842 v~~~~----------------------~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~ 876 (877)
+.... .....|+|+|||+|+| ++.+||||||||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~ 192 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYG 192 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECC
Confidence 86531 2346899999999999 69999999999975
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.94 E-value=1.9e-25 Score=244.11 Aligned_cols=271 Identities=23% Similarity=0.368 Sum_probs=221.4
Q ss_pred cccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHHHHHHHhh
Q 002810 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLAR 398 (877)
Q Consensus 320 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 398 (877)
.||.|-+++||+||+||+|+.+|++|+.++... + . ....+|++.|+-||..|. .+......+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~----c--~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E----C--PKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C----C--CccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999998753 1 1 134679999999999999 777778889999999987
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEEEEEc
Q 002810 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (877)
Q Consensus 399 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C 478 (877)
......-+.|+|.++|..|||+.|+.++............ .......+.|.++|+.......+|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 6544455679999999999999999998765542211000 011223567999999999999999
Q ss_pred CCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeC
Q 002810 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 558 (877)
Q Consensus 479 ~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ 558 (877)
..|+..+.+.+....+.|.-|...
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------------------------------- 160 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPSN-------------------------------------------------------- 160 (295)
T ss_pred cccCCeEEeecceeeeeccCCCCC--------------------------------------------------------
Confidence 999999888776666665544210
Q ss_pred CceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHHH
Q 002810 559 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (877)
Q Consensus 559 ~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~~ 638 (877)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCCC
Q 002810 639 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (877)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (877)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEE
Q 002810 719 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 798 (877)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~ 798 (877)
..+++.++|+.+...|.... ..|++|++.+.+..+
T Consensus 161 ------------------------------------------~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~ 195 (295)
T PF13423_consen 161 ------------------------------------------SNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQR 195 (295)
T ss_pred ------------------------------------------ccchHHHHHHHHHhhccccc---ccccccccccceeee
Confidence 12489999999999888755 899999999999999
Q ss_pred EEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccC-------CCCCceEEEEEEEEeec-cCCCCcEE
Q 002810 799 LDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-------DGESYVYDLFAISNHYG-GLGGGHYT 870 (877)
Q Consensus 799 ~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~-------~~~~~~YdL~AVinH~G-~l~gGHYt 870 (877)
..|.++|+||.|.++|+.....+..|....+.+|. .+++..++... ..+..+|+|.|+|+|.| +..+|||+
T Consensus 196 r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlV 274 (295)
T PF13423_consen 196 RTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLV 274 (295)
T ss_pred eeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceE
Confidence 99999999999999999998666889999999995 69999888654 23567999999999999 69999999
Q ss_pred EEEEeC
Q 002810 871 AYAKVN 876 (877)
Q Consensus 871 Ay~k~~ 876 (877)
||+|.+
T Consensus 275 s~vrv~ 280 (295)
T PF13423_consen 275 SLVRVG 280 (295)
T ss_pred EEEEcC
Confidence 999985
No 36
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.91 E-value=6.3e-24 Score=222.37 Aligned_cols=156 Identities=33% Similarity=0.527 Sum_probs=129.4
Q ss_pred ccCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccCh
Q 002810 312 KKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAP 389 (877)
Q Consensus 312 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p 389 (877)
...+-+|.+||.|+-++=|.|++||+|+|.+++|+||+.. .|+....+.+...|+.|++++|+.. .+.++|
T Consensus 127 ~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSp 199 (442)
T KOG2026|consen 127 GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSP 199 (442)
T ss_pred CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCH
Confidence 3467899999999999999999999999999999999764 2344456789999999999999976 678999
Q ss_pred HHHHHHHhhhc-CCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccce
Q 002810 390 RAFKGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVF 468 (877)
Q Consensus 390 ~~~~~~l~~~~-~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF 468 (877)
.+|++++.... ..|..++|-|+-|||.|||+.||.+++..++ ..|||+..|
T Consensus 200 he~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~f 251 (442)
T KOG2026|consen 200 HEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSF 251 (442)
T ss_pred HHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhh
Confidence 99999997654 4799999999999999999999999876542 258999999
Q ss_pred eEEEEEEEEcCC----CCCeeeeecCCeeEeecCCCCC
Q 002810 469 QGQYKSTLVCPV----CSKVSITFDPFMYLTLPLPSTV 502 (877)
Q Consensus 469 ~G~~~s~~~C~~----C~~~s~~~e~f~~LsL~ip~~~ 502 (877)
+|.++-.-+=.. --...+..-||++|+|+||...
T Consensus 252 qG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~p 289 (442)
T KOG2026|consen 252 QGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPP 289 (442)
T ss_pred cceEEeeeeccccccccccceEEEEeeEEEEecCCCCC
Confidence 998876554333 2244566789999999999653
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-23 Score=220.78 Aligned_cols=107 Identities=28% Similarity=0.394 Sum_probs=80.5
Q ss_pred CHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeec-CCcccccceeEeccCCCCCccccc
Q 002810 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS-RYLKNKLDTFVNFPILNLDLSKYM 842 (877)
Q Consensus 764 sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~-~~~~~Ki~~~V~FPl~~LDls~~v 842 (877)
++.+.|..|...|.+.+ |.-+ -+.-+.|.+++.|-++|++|++|||||.|. .+..+|+...++||. .|.++.-+
T Consensus 266 sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~-~l~i~~~~ 340 (420)
T KOG1871|consen 266 SVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPW-TLKISKNC 340 (420)
T ss_pred CHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccc-eeeechhh
Confidence 34444555555555433 3322 556788999999999999999999999997 567789999999995 78887755
Q ss_pred ccCCC------CCceEEEEEEEEeec-cCCCCcEEEEEEe
Q 002810 843 KSKDG------ESYVYDLFAISNHYG-GLGGGHYTAYAKV 875 (877)
Q Consensus 843 ~~~~~------~~~~YdL~AVinH~G-~l~gGHYtAy~k~ 875 (877)
....- ....|+|.||+-|.| +..+|||++-+-+
T Consensus 341 ~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~ 380 (420)
T KOG1871|consen 341 FSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSR 380 (420)
T ss_pred hccccchhhhccccccceEEEEEecccccccCceEEeeee
Confidence 53211 235699999999999 8999999987643
No 38
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.84 E-value=2.3e-21 Score=176.10 Aligned_cols=96 Identities=41% Similarity=0.945 Sum_probs=63.0
Q ss_pred CCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCCCCCC---CCCcchhcccccCC
Q 002810 43 GNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSS---EGDDLEVRRNLEEG 119 (877)
Q Consensus 43 g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~Ll~~~~~~~---~~~~~~Lk~~l~e~ 119 (877)
|++|||||++||++|+.|+.+....... ......+||||||++|++...... ......||++|.++
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~-----------~~~~~~~pGpIdN~~L~~~~~~~~~~~~~~~~~Lk~~l~~~ 69 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNES-----------DPDSSPRPGPIDNSDLLDEDNSQLQFPPPENYRLKPNLQEG 69 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTT-----------TT-GGG---SB-GGGGECCTTT---------TEE-SS--CT
T ss_pred CCEEEEECHHHHHHHHHHhCCCCccccc-----------ccccCCCCCCEeCHHHhCCCCcccccchhhhhhccccccCC
Confidence 8999999999999999999887653210 001135699999999998653210 01245899999999
Q ss_pred CcEEEeCHHHHHHHHHHhCCCCCCceeEee
Q 002810 120 QDYVLVPQQVWEKLFCWYKGGPALPRKMIS 149 (877)
Q Consensus 120 ~Dy~~Vp~~~W~~l~~wYG~~~~I~R~vi~ 149 (877)
.||++||+++|++|.+||||||+|.|.||.
T Consensus 70 ~Dy~~v~~~~W~~l~~~Ygggp~I~R~vi~ 99 (99)
T PF06337_consen 70 VDYELVPEEVWDYLHSWYGGGPEIKRQVIN 99 (99)
T ss_dssp TTEEEEEHHHHHHHHHHH-T----EEEEE-
T ss_pred CCEEEECHHHHHHHHHHcCCCCcEEEEeeC
Confidence 999999999999999999999999999983
No 39
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-20 Score=204.01 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=114.9
Q ss_pred CCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHH
Q 002810 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKL 396 (877)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l 396 (877)
+-++||.|+|||||||+.+|||-..|+++..+... ...............+..++..+|+.|.++ .++.|..+...+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~-~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl 179 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLY-KRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTL 179 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhcc-chhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHH
Confidence 44689999999999999999999999999887543 222222233333567889999999999886 999999999999
Q ss_pred hhhcCCCCC------CCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeE
Q 002810 397 ARFAPQFSG------YNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 470 (877)
Q Consensus 397 ~~~~~~F~~------~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G 470 (877)
.+..|+|.- +.||||.|+...++-.+|+-+......+ ++.+.+...|++
T Consensus 180 ~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~-------------------------~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 180 SSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP-------------------------CLEAEAAAGFGA 234 (473)
T ss_pred HHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-------------------------chhHHHHHhhcc
Confidence 999999975 8999999999999999997764322111 234567888999
Q ss_pred EEEEEEEcCCCCCeeee--ecCCeeEee
Q 002810 471 QYKSTLVCPVCSKVSIT--FDPFMYLTL 496 (877)
Q Consensus 471 ~~~s~~~C~~C~~~s~~--~e~f~~LsL 496 (877)
++..+..|.+-...... .|.|..|+.
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~c 262 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLKC 262 (473)
T ss_pred ccccceeeccCcccccccccccccccce
Confidence 99999998875544333 444444443
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.80 E-value=1.5e-19 Score=159.46 Aligned_cols=83 Identities=48% Similarity=1.125 Sum_probs=73.1
Q ss_pred CCCCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCCCCCCCCCcchhcccccCCC
Q 002810 41 KEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120 (877)
Q Consensus 41 ~~g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~Ll~~~~~~~~~~~~~Lk~~l~e~~ 120 (877)
++|++||+||++||++|++|+.... ...||||||++|+.... +..||+++.++.
T Consensus 2 ~~g~~~yiIs~~W~~~~~~~~~~~~--------------------~~~pGpIdN~~l~~~~~------~~~lk~~l~~~~ 55 (86)
T smart00695 2 REGDTWYLISTRWYRQWADFVEGKD--------------------GKDPGPIDNSGILCSHG------GPRLKEHLVEGE 55 (86)
T ss_pred CCCCEEEEEeHHHHHHHHHHhCCCC--------------------CCCCCCCCcHHhcCCCC------CcccccccccCC
Confidence 6899999999999999999987322 26899999999997432 347999999999
Q ss_pred cEEEeCHHHHHHHHHHhCCCC-CCceeEee
Q 002810 121 DYVLVPQQVWEKLFCWYKGGP-ALPRKMIS 149 (877)
Q Consensus 121 Dy~~Vp~~~W~~l~~wYG~~~-~I~R~vi~ 149 (877)
||++||+++|++|.+|||||| +|.|.|+.
T Consensus 56 dy~~V~~~vW~~l~~~YGggp~~i~R~~i~ 85 (86)
T smart00695 56 DYVLIPEELWNKLVSWYGGGPGPIPRKVVC 85 (86)
T ss_pred CEEEeCHHHHHHHHHHHCCCCccceEEeec
Confidence 999999999999999999999 59999984
No 41
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=98.75 E-value=2.4e-08 Score=85.99 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=54.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecCc
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 246 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~~ 246 (877)
+..+..+|+.+||..+.+++|++|++ .+.+|||.++..+.. +++.+...|++|+++..+|.|++|.++.++
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 35678899999999999999999999 778999999877766 788888899999999999999999997543
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=1.2e-07 Score=110.35 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=70.4
Q ss_pred ccCCCCCccceeEEEEEeecCCCeEEEEEeceeec--CCcc--cccceeEeccCCCCCcccccc----------cCC---
Q 002810 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS--RYLK--NKLDTFVNFPILNLDLSKYMK----------SKD--- 846 (877)
Q Consensus 784 w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~--~~~~--~Ki~~~V~FPl~~LDls~~v~----------~~~--- 846 (877)
-.|+.|++++....+..+-.+|++|.|..--+... .+++ .|.-..|.+| +.+-|..--. ...
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 47999999999999999999999999998888764 3333 3567788888 4565542110 000
Q ss_pred ---CCC--ceEEEEEEEEeec-cCCCCcEEEEEEeC
Q 002810 847 ---GES--YVYDLFAISNHYG-GLGGGHYTAYAKVN 876 (877)
Q Consensus 847 ---~~~--~~YdL~AVinH~G-~l~gGHYtAy~k~~ 876 (877)
+++ .+|+|-|+|.|.| +-..+|.++++|..
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~ 816 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVL 816 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEcc
Confidence 122 7899999999999 77999999999964
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=97.32 E-value=0.003 Score=65.55 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=83.9
Q ss_pred CeeEeecCCCC---CceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCC--CcEEEEEEeCCceeEec
Q 002810 491 FMYLTLPLPST---VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKID--EGLLLAEVYNHQIFRFF 565 (877)
Q Consensus 491 f~~LsL~ip~~---~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~ 565 (877)
+.+--|+||.. ..+.+.|+++..... .--.+.+.++|++++.||.+++.+.+++... ..+.+.++++++|++++
T Consensus 3 l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~ 81 (213)
T PF14533_consen 3 LYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKIL 81 (213)
T ss_dssp EEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE
T ss_pred eEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeec
Confidence 44445556543 345666666643222 2236899999999999999999999887543 57999999999999999
Q ss_pred cCCcccccccCCCCeEEEEEecCCC-----C--CceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCHHHHH
Q 002810 566 ENPAELISSIKDDEHIVAYRFDRKQ-----G--GKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (877)
Q Consensus 566 ~d~~~~~~~i~~~d~i~~ye~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~~ 638 (877)
. ++..+..|.+...+.+-++|... + +...+++.|-..+ ....||+||++.+.. .-+..++.
T Consensus 82 ~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~----------~~~~hGiPF~f~v~~-gE~f~~tK 149 (213)
T PF14533_consen 82 S-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKD----------PSRTHGIPFLFVVKP-GETFSDTK 149 (213)
T ss_dssp --TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSS----------TT-EEEEEEEEEEET-T--HHHHH
T ss_pred C-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecC----------ccccCCCCEEEEeeC-CCcHHHHH
Confidence 8 66778888665667777787664 2 2355777775432 227899999999973 34666676
Q ss_pred HHHHHHc
Q 002810 639 IAVSKLL 645 (877)
Q Consensus 639 ~~~~~~~ 645 (877)
..+.+++
T Consensus 150 ~Rl~~rl 156 (213)
T PF14533_consen 150 ERLQKRL 156 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666655
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00061 Score=80.20 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=58.6
Q ss_pred cccCCCcchHHHHHHHHhCChHHHHHHHhcCc---C-------ccccCCCCCchhHHHHHHHHHHHHHhcCCCCcc--Ch
Q 002810 322 LQNLGNTCFMNSALQCLVHTPDLAQYFLGDYS---D-------EINTENPLGMHGELALAFGDLLRKLWSSGRAAV--AP 389 (877)
Q Consensus 322 L~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~---~-------~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i--~p 389 (877)
|.|.|||||.||+||||..+|+|+--+...+. . ..+.....-.......+....+... +.....+ +-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 99999999999999999999999988765421 1 1111110000001111111111111 1111122 22
Q ss_pred HHHHHHH---hhhcCCCCCCCcccHHHHHHHHHHHHHHHhh
Q 002810 390 RAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 427 (877)
Q Consensus 390 ~~~~~~l---~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~ 427 (877)
..+.... .+....|....|+|||+|+.-|+-.+..-+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 2333332 2334467788999999999998888876553
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=93.16 E-value=0.43 Score=41.93 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=51.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCC-ccccCCCCccCChhhhhccCCceEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQ-RSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~-~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
....++++..|+.+|+.++-.++|++++..||..+.... .....+.+..++|..+++.++..|.|.
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 456889999999999999999999999998888663322 222345677899999999999888775
No 46
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=92.85 E-value=0.4 Score=40.39 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=49.1
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.++..+|+.+|+.++....+++.+..||| |.+ ..+++...++.++++..+..+.+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li-~~G-----k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLI-YNG-----RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEE-ECC-----eEccCCcccHHHcCCCCCCEEEE
Confidence 344467889999999999999999999999999998 432 23455457899999998877765
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=92.42 E-value=1 Score=39.53 Aligned_cols=64 Identities=17% Similarity=0.412 Sum_probs=50.3
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
......+.+.+.+++..|++..|+..+++++.+||+ |.+. . +. .+.|+.++++.++..|-+-..
T Consensus 20 ~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~-f~G~----~-L~-~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 20 DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFL-FDGQ----R-IR-DNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEE-ECCe----E-CC-CCCCHHHcCCCCCCEEEEEEe
Confidence 344567899999999999999999999999999988 4322 2 22 368999999999977755443
No 48
>PTZ00044 ubiquitin; Provisional
Probab=92.28 E-value=0.72 Score=39.19 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=51.2
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.....++.++...|+.+|+.++....+++++..||| |.+. .++ .+.+|.++++.++..+.+-++
T Consensus 9 ~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~-----~L~-d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 9 TGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGK-----QMS-DDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCE-----Ecc-CCCcHHHcCCCCCCEEEEEEE
Confidence 344567899999999999999999999999999999 6432 233 467899999998887766554
No 49
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=91.35 E-value=1.2 Score=37.70 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=49.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
....+.++...|+.+|++++....+++++..||+ |.+ ..+. .+++|.++++.++..+-+-.+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g-----~~L~-d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSG-----KQMN-DDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECC-----eEcc-CCCCHHHcCCCCCCEEEEEEE
Confidence 3456788999999999999999999999999998 542 2233 368999999999987766544
No 50
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=91.23 E-value=0.93 Score=39.58 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=52.4
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
...+++...|+.+|++++-..+|+++..-||.-|.+.......+.+.+++|..+++.++..|.|.
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45678999999999999999999999999997665543222346667889999999999988775
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=90.69 E-value=0.88 Score=37.97 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
.....+.++...|+.+|++++....+++++..||+ +.+ ..+. .+++|.++++.++..+.+.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g-----~~l~-d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLI-FKG-----KERD-DAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEe-eCC-----cccC-ccCcHHHcCCCCCCEEEEe
Confidence 34456788999999999999999999999988988 322 1233 3689999999988877653
No 52
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=90.65 E-value=0.97 Score=38.29 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
+....+.++..+|+.+|+++++...+++++..||+ |.+ ..+++ +.+|.++++..+..+.+
T Consensus 10 G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G-----~~L~d-~~~L~~~~i~~~~~l~l 69 (74)
T cd01807 10 GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-FKG-----KALAD-DKRLSDYSIGPNAKLNL 69 (74)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC-----EECCC-CCCHHHCCCCCCCEEEE
Confidence 34457889999999999999999999999999987 433 22333 58999999998877654
No 53
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=89.35 E-value=1.9 Score=36.39 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=49.7
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
....+.++...|+.+|++++.+..+++++..||| |.+ ..+. .+++|.++++.++..+-+-.+.
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g-----~~L~-d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEEc
Confidence 3456788999999999999999999999999999 532 2233 3579999999998877766543
No 54
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=87.84 E-value=3.2 Score=35.11 Aligned_cols=64 Identities=8% Similarity=0.265 Sum_probs=49.5
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
......+.++..+|+.+|++++....+++.+..||+ |. + ..|+ .+.+|.++++.++..+.+-..
T Consensus 7 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~----G-~~L~-D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 7 KGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-FE----G-RPME-DEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-EC----C-EECC-CCCCHHHcCCCCCCEEEEEEE
Confidence 344557888999999999999999999999888887 32 2 2233 358999999999887766554
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=87.75 E-value=1.8 Score=36.88 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccC-CceEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM-DQDILL 239 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~-~q~ilv 239 (877)
.....+.++...|+.+|++++....+++++.-|| |.+.. +.+.+.+|.++++.. +..+.+
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~~-----L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQR-----LARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCCe-----eCCCcCCHHHcCCCCCCCEEEE
Confidence 3445788899999999999999999999998898 43322 344568999999984 455443
No 56
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=87.34 E-value=2.4 Score=35.50 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=44.4
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
..+.+....|+.+|++.+.+..+++.+..||+ |.+ ..++ .+++|.++++.++..+-+
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li-~~G-----k~L~-d~~tL~~~~i~~~stl~l 68 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLI-FAG-----KILK-DTDTLTQHNIKDGLTVHL 68 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEE-ECC-----eEcC-CCCcHHHcCCCCCCEEEE
Confidence 47888899999999999999999988888886 322 2233 357999999988876644
No 57
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=87.22 E-value=1.8 Score=36.26 Aligned_cols=58 Identities=22% Similarity=0.397 Sum_probs=45.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCC-cceEEEEecCCCccccCCCCccCChhhhhccCCceE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQ-EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~-~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (877)
.....+.+.+..++..|++..|+..+++. +++|++ |.+.. + +.++|+.++++.++..|
T Consensus 10 ~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-fdG~~-----L-~~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 10 GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-FDGKR-----L-DPNDTPEDLGIEDGDTI 68 (72)
T ss_dssp SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-ETTEE-----E--TTSCHHHHT-STTEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-ECCEE-----c-CCCCCHHHCCCCCCCEE
Confidence 33567888999999999999999999999 889987 54321 2 34789999999988653
No 58
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=87.09 E-value=2.6 Score=35.17 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=47.5
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.+...+|+.++++.+....+++.++.||+ |.+ ..++ .+.+|.++++..+..+-+
T Consensus 7 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~~G-----~~L~-d~~~l~~~~i~~~stl~l 67 (70)
T cd01798 7 TGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-FAG-----KELR-NTTTIQECDLGQQSILHA 67 (70)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-ECC-----eECC-CCCcHHHcCCCCCCEEEE
Confidence 344456788999999999999999999999999997 432 2233 358999999988876643
No 59
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=87.01 E-value=4.3 Score=36.90 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
......+.++..+|+.+|++++....+++.++.||| |.+ ..++ .+.+|.++++..+..+-+-+..
T Consensus 36 ~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 36 TGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-WNN-----MELE-DEYCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEec
Confidence 344567889999999999999999999999999998 432 2233 3589999999988877665543
No 60
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=85.43 E-value=3.4 Score=34.63 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (877)
.....+.++..+|+.++++++....+++++.-||| |.+ ..++ .+.++.++++..+..+-
T Consensus 8 G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~~G-----~~L~-D~~~l~~~~i~~~~tv~ 66 (70)
T cd01794 8 GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-FSG-----KLLT-DKTRLQETKIQKDYVVQ 66 (70)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-ECC-----eECC-CCCCHHHcCCCCCCEEE
Confidence 34567888999999999999999999999999998 532 2333 36899999888765553
No 61
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=85.40 E-value=3.3 Score=35.00 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=47.8
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
..++.+...+|+.+++.++....+++++..||| |.+ ..++ .+.+|.++++..+..+-+-++
T Consensus 10 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li-~~G-----k~L~-D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 10 THTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL-LAG-----VPLE-DDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred EEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE-ECC-----eECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 457788999999999999999999999999998 432 2233 358999999988777655443
No 62
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=83.88 E-value=3.8 Score=33.89 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=47.3
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
...+.+...+|+.+|++++....+++++..||- |.+ ..+ +.+.+|.++++.++..|.+-
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~-~~G-----~~L-~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI-YNG-----KEL-DDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE-ETT-----EEE-STTSBTGGGTTSTTEEEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceee-eee-----ecc-cCcCcHHHcCCCCCCEEEEE
Confidence 457788999999999999999999999998876 322 233 45789999999998766554
No 63
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=82.98 E-value=4.9 Score=33.40 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=47.2
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.....+.+....|+.+|++++....+++++..||+ |. + .++.+ +.+|.++++.++..+-+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g-~~L~d-~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 10 SQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLI-YS----G-RVLKD-DETLSEYKVEDGHTIHL 69 (72)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-EECCC-cCcHHHCCCCCCCEEEE
Confidence 34467888899999999999999999999999998 43 2 23443 68999999988876643
No 64
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=82.14 E-value=7.5 Score=32.91 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=47.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCC--CCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l--~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
....+.++...|+.+|++++....++ ++++.||+ |. + ..++ .+++|.++++.++..+.+-+.
T Consensus 11 ~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~-~~----G-~~L~-d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 11 QTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI-YS----G-KILK-DDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE-EC----C-EEcc-CCCCHHHcCCCCCCEEEEEEe
Confidence 34567888999999999999999998 88888877 32 2 2344 358999999999887766543
No 65
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=82.06 E-value=4.8 Score=35.85 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=50.1
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
...+.++..+|+.+|+..+.+.|++++.+=+||-. +. .+.|..+||.++++..+..+++=
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~-----~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GK-----ILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-Cc-----eeccCCccHHhcCCCCCCEEEEE
Confidence 45778999999999999999999999988888843 22 45667899999999999887664
No 66
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=81.93 E-value=5.8 Score=33.74 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=48.9
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
..+.++..+|+.+|++++-...+++++..||+ |.+ ..+++ +.+|.++++.++..+.+-.+.
T Consensus 10 ~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~d-~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 10 LNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG-----IFIKD-SNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC-----EEcCC-CCcHHHcCCCCCCEEEEEEec
Confidence 46778899999999999999999999999998 433 23333 589999999999888776553
No 67
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=81.40 E-value=7.9 Score=33.21 Aligned_cols=56 Identities=29% Similarity=0.393 Sum_probs=45.3
Q ss_pred eChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 180 ~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
+....|+.+|++++....++++++-||| |.+ ..|. .+.+|.++++..+..+.+-++
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~QrLi-~~G-----k~L~-D~~tL~~y~i~~~~~i~l~~~ 74 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQRLF-YRG-----KQME-DGHTLFDYNVGLNDIIQLLVR 74 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHeEEE-eCC-----EECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 6778999999999999999999999998 432 2233 368999999999888877655
No 68
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=81.00 E-value=9.9 Score=32.66 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=47.3
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
....+.+....|+.+|++++.+.++++.++.||-..+.+ ..+.+ +++|.++++.++..+.+-++
T Consensus 13 ~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G----~~L~D-~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 13 NEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSR----EVLQD-GVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCC----CCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence 345567788999999999999999999988888422222 23333 57999999998887765443
No 69
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=80.90 E-value=4.5 Score=34.95 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=38.2
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.++..+|+.+|++++.+.++++.....|+ .+.+....+..+.+++|.++++.-|..+.+
T Consensus 12 ~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~--~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 12 KDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLS--KDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---B--SSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred CCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEE--ecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 344556788999999999999999999998776554 333333244456688999999998877765
No 70
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=79.81 E-value=0.98 Score=44.58 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=16.4
Q ss_pred CCCccccccCCCcchHHHHHHHHhC
Q 002810 316 KGGLAGLQNLGNTCFMNSALQCLVH 340 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~ 340 (877)
...++|+.|.+|+|.+||++|.+-.
T Consensus 30 ~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 30 KMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp --EEE----SSSTHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCChHHHHHHHHHHH
Confidence 3457799999999999999998753
No 71
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=79.37 E-value=11 Score=32.19 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=44.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
....+.++..+|+.+|++++.+.++++++..||- +. + ..+.+ + +|.++++.++..+.+
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~--~~---G-k~L~d-~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 12 TRFDLSVPPDETVEGLKKRISQRLKVPKERLALL--HR---E-TRLSS-G-KLQDLGLGDGSKLTL 69 (78)
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE--EC---C-cCCCC-C-cHHHcCCCCCCEEEE
Confidence 3457888999999999999999999988876664 32 2 23444 3 899999999887655
No 72
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=78.02 E-value=13 Score=31.56 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
+....+.++..+|+.+|++++-..++++++..||- |. + ..+.+ +++|.++++.++..+.+
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~----G-k~L~D-~~tL~~ygi~~~stv~l 70 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KW----Y-TIFKD-HISLGDYEIHDGMNLEL 70 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eC----C-cCCCC-CCCHHHcCCCCCCEEEE
Confidence 34456688899999999999999999999988875 33 2 34443 57999999988876654
No 73
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=77.46 E-value=6.8 Score=31.46 Aligned_cols=53 Identities=28% Similarity=0.413 Sum_probs=41.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 234 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~ 234 (877)
...+.++...|+.+|+.++...++++++..||+ +.+ ..+.+ +++|.++++.++
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~-~~g-----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQQRLI-YKG-----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC-----EECCC-CCCHHHcCCcCC
Confidence 457888999999999999999999998888876 322 22333 588998887654
No 74
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=75.71 E-value=2.3 Score=34.34 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=29.8
Q ss_pred CCCccCCCCCccceeEEEEEee--cCCCeEEEEEeceee
Q 002810 781 DDMWYCPQCKEHRQATKKLDLW--MLPDVLVFHLKRFSY 817 (877)
Q Consensus 781 ~n~w~C~~Ck~~~~a~K~~~i~--~lP~iLiihLKRF~~ 817 (877)
.++|.||+|+.+.-..|.+..- .+.+++=||+|+|-.
T Consensus 2 ~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 2 KNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred CccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 3678999999887777777664 688899999999864
No 75
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=73.84 E-value=13 Score=30.25 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=43.9
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
...+.+....|+.+|++++.+.++++.+..+|+ +. . ..++ .+.+|.++++.++..+.+
T Consensus 9 ~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~-~~-g----~~l~-d~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 9 TFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI-YA-G----KILK-DDKTLSDYGIQDGSTLHL 66 (69)
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-EC-C----cCCC-CcCCHHHCCCCCCCEEEE
Confidence 345677888999999999999999998888874 32 2 2333 467899999888876654
No 76
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=69.17 E-value=7.2 Score=32.24 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIW 207 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW 207 (877)
++.....+.++...++.++++.+|+.|++++++..|-
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~ 40 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLK 40 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEE
Confidence 3444567889999999999999999999998865443
No 77
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=69.15 E-value=19 Score=30.45 Aligned_cols=63 Identities=14% Similarity=0.308 Sum_probs=45.8
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.....+.+...+|+.+|++++....++++++-+|-- . .-.+ .++. .+.+|.++++..++.+.+
T Consensus 9 g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~-~-~~~G-k~l~-D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 9 GQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG-L-KVKG-KPAE-DDVKISALKLKPNTKIMM 71 (74)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe-e-cccC-CcCC-CCcCHHHcCCCCCCEEEE
Confidence 334567888899999999999999999998777652 1 1112 2343 368999999988876654
No 78
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=66.02 E-value=30 Score=29.67 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcc-eEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~-~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
+++......+...+|+.+|..-+......+... ++|..-+... .+-.+.++||.|+++..+..++||
T Consensus 14 pdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~---~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 14 PDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRR---ELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTE---ECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCc---CCCccccccHHHhcCCCCeEEEEE
Confidence 556667788999999999999988876665544 8876544322 222222589999999998888886
No 79
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=65.18 E-value=51 Score=28.22 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=46.9
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCC-CccCChhhhhccCCceEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~-~~~~tl~d~~l~~~q~ilve 240 (877)
.+++......+...+|+.+|.+-+....+.....++|-.-+... .+-+ +.++||.++++..+..+++|
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk---~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRR---TFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCc---CCccccccCCHHHCCCCCceEEEEe
Confidence 35555667788999999999999966555555566665433322 2222 33689999999888888876
No 80
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=58.88 E-value=88 Score=28.08 Aligned_cols=62 Identities=19% Similarity=0.372 Sum_probs=47.9
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.+.....+.+.+...++.|++.=|+.-+++.+.+|+. +.+ ... ....|+.++...++..|-+
T Consensus 28 qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG-~rI-----~~~~TP~~L~mEd~D~Iev 89 (99)
T KOG1769|consen 28 QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDG-QRI-----RETHTPADLEMEDGDEIEV 89 (99)
T ss_pred CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECC-cCc-----CCCCChhhhCCcCCcEEEE
Confidence 4445568899999999999999999999999999865 433 221 2367999999988876643
No 81
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=56.79 E-value=52 Score=27.81 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.1
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEec
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYF 210 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~ 210 (877)
++++....+.+-...|+.|+++++|+..++++..+.++...
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 35666678899999999999999999999999988877653
No 82
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.57 E-value=28 Score=39.36 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=49.2
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhC---CCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRG---IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~---l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.+....+.++..+||.+|++++....+ ++.++.||+ |.+ .+|. .+++|.++++..+..|++=+.
T Consensus 9 ~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~G-----kiL~-Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-YSG-----KILS-DDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEec
Confidence 334467788999999999999999988 888888888 532 2344 357999999988877766544
No 83
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=55.75 E-value=86 Score=26.53 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=44.3
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCC-CccCChhhhhccCCceEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~-~~~~tl~d~~l~~~q~ilve 240 (877)
.+++......+...+|+.+|.+-+...... ...++|+.-+... .+-+ +.++||.++++.. ..++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~---~~~~~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRR---VLTDLDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCc---cCCCCCccCcHHHcCCcc-ceEEEE
Confidence 355555677889999999999888765432 4567777544433 2222 4689999999994 444444
No 84
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=55.01 E-value=26 Score=38.54 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=41.4
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChH-HHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002810 316 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (877)
..|.+=|.=.-|.||+||++=.|=++.. |+.- ++.++..++..+ +|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-----------------------~l~~aw~~f~~G-----~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKSP-----------------------GLDEAWNEFKAG-----DPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSSH-----------------------HHHHHHHHHHTT-------HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCCH-----------------------HHHHHHHHHhCC-----ChHHHHH
Confidence 3577777777899999999877765532 3211 112222222222 3555555
Q ss_pred HHhhhcCCCCCCCcccHHHHHHHHHHHHHH
Q 002810 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHE 424 (877)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~e 424 (877)
.+-. ...+..++--||+++|..||+.++.
T Consensus 151 ~~Ya-~~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 151 WCYA-STNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHH-HTT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHH-HcCCCCCCCcCHHHHHHHHHHhccc
Confidence 4433 2345667899999999999986653
No 85
>PLN02560 enoyl-CoA reductase
Probab=53.08 E-value=56 Score=35.93 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=44.2
Q ss_pred EEEeChhchHHHHHHHHHHHhCC-CCcceEEEEecCC--CccccCCCCccCChhhhhccCCceEEE
Q 002810 177 VIRLSKKASTRQLYEKVCKLRGI-EQEKARIWDYFNK--QRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 177 ~~~~S~~~tv~~l~~~~~~~~~l-~~~~~RlW~~~~~--~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.+.++..+|+.+|++.+-+..++ +++..||+-.... ..+ ..+. .+++|.++++.++.++.+
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g-~~L~-d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRP-TVLD-DSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCc-cccC-CCCCHHhcCCCCCceEEE
Confidence 57788999999999999998876 6788898843211 222 2333 467899999988876555
No 86
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=52.51 E-value=40 Score=38.75 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=52.1
Q ss_pred EEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 165 l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
++|.+...+.+..+.+...+||.+|++.+.+.|+.+++..+|- |-+ .+|. .++||..+++.++-+|=+-
T Consensus 16 irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-faG-----rILK-D~dTL~~~gI~Dg~TvHLV 84 (493)
T KOG0010|consen 16 IRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-YAG-----RILK-DDDTLKQYGIQDGHTVHLV 84 (493)
T ss_pred eEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeee-ecC-----cccc-ChhhHHHcCCCCCcEEEEE
Confidence 3444434445788999999999999999999999999987765 332 3344 4689999999999766443
No 87
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=51.23 E-value=74 Score=26.95 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=46.0
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
++++....+.+-...|++|.+.++|+..++....+-++.. +..+. +--+ .|.....++++.||.+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~-g~~k~--l~~~-----qD~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV-GGDKP--LVLD-----QDSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe-cCCcc--cccC-----CccceeeccEEEEEEe
Confidence 3566677889999999999999999999999998888866 22211 1111 1334445678888754
No 88
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=50.63 E-value=53 Score=27.60 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEec
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYF 210 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~ 210 (877)
+++....+.+-...|++|.+..+|+..+|.+..+.++...
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 5666677888999999999999999999999988877543
No 89
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=50.03 E-value=58 Score=28.25 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=35.3
Q ss_pred eEEEEecCCC---CceEEEeChhchHHHHHHHHHHHhCC--CCcceEEEEec
Q 002810 164 CLKLIDSRDN---SQTVIRLSKKASTRQLYEKVCKLRGI--EQEKARIWDYF 210 (877)
Q Consensus 164 ~l~i~~~~~~---~~~~~~~S~~~tv~~l~~~~~~~~~l--~~~~~RlW~~~ 210 (877)
.++++..... .-.++.++...|..++.+.+.+.|++ ++.++.||.+.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~ 55 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVE 55 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEE
Confidence 4555553222 25689999999999999999999999 34578998443
No 90
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=46.30 E-value=62 Score=27.96 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCC--CcceEEEEecCC
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYFNK 212 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~--~~~~RlW~~~~~ 212 (877)
..-.++.+++.+|..++.+.+.+.|++. ++++.|+.....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 4457899999999999999999999997 457888877554
No 91
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=46.16 E-value=1.9e+02 Score=24.99 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=42.0
Q ss_pred eeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEE-EeCCceeEeccCCcccccc--cCCCCeEEEE
Q 002810 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE-VYNHQIFRFFENPAELISS--IKDDEHIVAY 584 (877)
Q Consensus 520 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~d~~~~~~~--i~~~d~i~~y 584 (877)
.....++++..++.+|+..+...+|+.....-+... ..+......+.|....+.. ++++..|++-
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 456788999999999999999999988776544332 3344444555555555543 5555555543
No 92
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=45.60 E-value=1.3e+02 Score=25.86 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=41.8
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCC-CCCcEEEEEEeCC-ceeEeccCCccc
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLK-IDEGLLLAEVYNH-QIFRFFENPAEL 571 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~e~~~~-~~~~~~~d~~~~ 571 (877)
..++.+.+..+..++...+.+.+++. ++..+.++|+..+ ...+.+.+...+
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCCh
Confidence 46788999999999999999999998 7888999998877 566677654433
No 93
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=44.24 E-value=85 Score=27.14 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=37.0
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhh
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA 229 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~ 229 (877)
..+++...-++.+|.+++++.++++.+.+.|+ |.....+ ++....+..++++
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLkl~~e~i~Ls-Ykde~s~-~~v~l~d~dle~a 64 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLELPAEHITLS-YKSEASG-EDVILSDTNMEDV 64 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCchhcEEE-eccCCCC-CccCcChHHHHHH
Confidence 46788999999999999999999998888888 5443333 2222234455544
No 94
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=43.89 E-value=18 Score=38.11 Aligned_cols=71 Identities=18% Similarity=0.347 Sum_probs=47.0
Q ss_pred ccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeecc
Q 002810 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 863 (877)
Q Consensus 784 w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~ 863 (877)
--|.+|+.+.| .++|.+.++|+|+.+|+ . .+-..+--..-+|-. +...|..-+||--.-.
T Consensus 171 ~pCn~C~~ksQ-~rkMvlekv~~vfmLHF---V--eGLP~ndl~~ysF~f--------------eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 171 GPCNSCNSKSQ-RRKMVLEKVPPVFMLHF---V--EGLPHNDLQHYSFHF--------------EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCCcccCChHH-hHhhhhhcCchhhhhhh---h--ccCCccCCCccceee--------------cCeeEEEEEEEEEecc
Confidence 36999977654 67799999999999993 2 222222111222322 3467999999865443
Q ss_pred CCCCcEEEEEEeC
Q 002810 864 LGGGHYTAYAKVN 876 (877)
Q Consensus 864 l~gGHYtAy~k~~ 876 (877)
.-|+++++++.
T Consensus 231 --~~HFvtWi~~~ 241 (275)
T PF15499_consen 231 --LNHFVTWIRDS 241 (275)
T ss_pred --CceeEEEEEcC
Confidence 67999999864
No 95
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=42.37 E-value=2.1e+02 Score=24.96 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=44.1
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccC---CCCccCChhhhhccCCceEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP---LDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~l---l~~~~~tl~d~~l~~~q~ilve 240 (877)
.+++.....++...+|+++|..-+-. .+-.+..++|---+.......+ -.+.+.||+|++|.....++|+
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 35555567788889999999988843 3334455655422222111011 1345789999999987777776
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=41.90 E-value=88 Score=23.54 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~ 208 (877)
.....+.++...|+.++++.++..++++++.++|+.
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~ 42 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV 42 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE
Confidence 334567778899999999999999998888888863
No 97
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=41.39 E-value=2.2e+02 Score=24.75 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=46.9
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.+++......+...+++.+|..-+-. .+.+++.+.|-.-+....... ++.+.||++++|.....++||.+
T Consensus 12 lP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~--~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 12 YPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH--LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC--cccCCCHHHcCCCCCcEEEEecC
Confidence 34555566777888999999876665 455666676654333322211 34458999999999888888743
No 98
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.24 E-value=15 Score=40.80 Aligned_cols=111 Identities=20% Similarity=0.263 Sum_probs=66.4
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCC----CccCh--
Q 002810 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGR----AAVAP-- 389 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~----~~i~p-- 389 (877)
..-++|+.|.||-|+.+|..|.+.+..++...+-..-+..+...... ....+..-|+..++......+ ..+.|
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~-~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~ 253 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSF-VRSPISEIFGGQLRSVLYQPSNKESATLQPFF 253 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCc-ccCcHHHhhccccccceeccccccccccCccc
Confidence 34589999999999999999999999999886643333333322221 122355555544444322111 11111
Q ss_pred -----------HHHHHHHhhhc-----CCCC--------CCCcccHHHHHHHHHHHHHHHhh
Q 002810 390 -----------RAFKGKLARFA-----PQFS--------GYNQHDSQELLAFLLDGLHEDLN 427 (877)
Q Consensus 390 -----------~~~~~~l~~~~-----~~F~--------~~~QqDA~Efl~~LLd~L~eel~ 427 (877)
+....++..+. |.+. ...|.++++|..+|+..|+..+-
T Consensus 254 tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~y 315 (420)
T KOG1871|consen 254 TLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVY 315 (420)
T ss_pred eeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHH
Confidence 12223333222 2222 35799999999999999998763
No 99
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=38.13 E-value=2.3e+02 Score=24.61 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=40.6
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCC-CCcEEEEEEeCCceeEeccCCcc
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKI-DEGLLLAEVYNHQIFRFFENPAE 570 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~d~~~ 570 (877)
...+.+.+..+..++...+.+.+++.. ++.+.++|+......+.+.+...
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~ 67 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDEN 67 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCc
Confidence 467888999999999999999999977 67899999986666677765433
No 100
>smart00455 RBD Raf-like Ras-binding domain.
Probab=37.49 E-value=1.2e+02 Score=25.39 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=33.4
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEe
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDY 209 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~ 209 (877)
++++....+.+-...|+.|+++.+|+..++.++.+.++..
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~ 45 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR 45 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 3555666788888999999999999999999988877754
No 101
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=37.27 E-value=1.7e+02 Score=24.65 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=38.4
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCc-ccccccCCCCeEEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPA-ELISSIKDDEHIVAY 584 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~-~~~~~i~~~d~i~~y 584 (877)
.+.+.++...++.+|++.++...++.....-++ |.++ ++.|.. ..-..|.++..|+.|
T Consensus 13 ~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi---~~Gk---~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 13 KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK---KWYT---IFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE---eCCc---CCCCCCCHHHcCCCCCCEEEEE
Confidence 355678899999999999999888665544332 4443 455432 233457777777665
No 102
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=36.96 E-value=1.3e+02 Score=25.64 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccccccCCCCeEEE
Q 002810 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVA 583 (877)
Q Consensus 507 ~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ 583 (877)
.+++-...|+ .+.+.++..+++.+|++.+++..++...+.-++ |.++ .+.|....-..|.+++.|+.
T Consensus 3 ~I~Vk~~~G~----~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~---~~Gk---~L~d~~L~~~gi~~~~~i~l 69 (78)
T cd01804 3 NLNIHSTTGT----RFDLSVPPDETVEGLKKRISQRLKVPKERLALL---HRET---RLSSGKLQDLGLGDGSKLTL 69 (78)
T ss_pred EEEEEECCCC----EEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE---ECCc---CCCCCcHHHcCCCCCCEEEE
Confidence 3444444443 367888999999999999999888755443332 4433 34443222344666666543
No 103
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=36.84 E-value=2.7e+02 Score=24.00 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=46.2
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (877)
++++......+...+++++|..-+... +.+...++|-.-+...... -.+.+.||.|+++.....++||.
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~--~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT--QLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc--CCCCCCcHHHcCCCCCcEEEEEc
Confidence 355555667888999999999887643 4455556655333332221 12456899999999888888874
No 104
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=34.95 E-value=1.5e+02 Score=31.36 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=25.3
Q ss_pred ccCCCcchHHHHHHHHhCChHHHHHHHh
Q 002810 323 QNLGNTCFMNSALQCLVHTPDLAQYFLG 350 (877)
Q Consensus 323 ~NlGNTCYmNSvLQ~L~~~p~f~~~~l~ 350 (877)
.|.-|-|.+-++|=+|.|+..+++...+
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~ 33 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTE 33 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888999999999999999999998854
No 105
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=33.52 E-value=1.2e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=37.3
Q ss_pred ChhchHHHHHHHHHHHhCC-CCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 181 SKKASTRQLYEKVCKLRGI-EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 181 S~~~tv~~l~~~~~~~~~l-~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
+...|+.+|++.+-+..+. +++..||+... .+..+ . .+++|.++++.++.++.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L-~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSL-K-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCccc-C-CcccHhhcCCCCCCEEEE
Confidence 4667999999999888754 67777887432 23133 2 356899998887766654
No 106
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=32.77 E-value=92 Score=33.15 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=28.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecC
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFN 211 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~ 211 (877)
....+.+|+..|..+|.+++-+.++++++.+|+|....
T Consensus 190 ~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 190 PEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp --EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 35678899999999999999999999999999998865
No 107
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=30.99 E-value=1.2e+02 Score=25.97 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=37.2
Q ss_pred hhchHHHHHHHHHHHhC--CC-CcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 182 KKASTRQLYEKVCKLRG--IE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 182 ~~~tv~~l~~~~~~~~~--l~-~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
...|+.+|++++...++ +. +++.||- |.+. .|+ .+++|.++++.++..+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~GK-----iL~-D~~TL~dygI~~gstlhL 72 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HCGR-----KLK-DDQTLDFYGIQSGSTIHI 72 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eCCc-----CCC-CCCcHHHcCCCCCCEEEE
Confidence 46799999999999974 54 6777765 4432 233 468999999998866544
No 108
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=30.16 E-value=3.5e+02 Score=23.14 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=43.8
Q ss_pred EEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCC-CCCCcEEEE-EEeCCceeEeccCC
Q 002810 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL-KIDEGLLLA-EVYNHQIFRFFENP 568 (877)
Q Consensus 507 ~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-e~~~~~~~~~~~d~ 568 (877)
.+.++..++........+.+.+..+.++++..+.+.+++ .++..+.++ ....+...+.+.+.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~ 67 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDD 67 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTT
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCC
Confidence 345565666544456788999999999999999999999 555666665 44445556666543
No 109
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=27.44 E-value=37 Score=42.83 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=74.4
Q ss_pred CCCHHHHHHHhcCcccCCCCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccc
Q 002810 762 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY 841 (877)
Q Consensus 762 ~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~ 841 (877)
.-.+.+|+..|+..+.+..+...-|+.|....--. ...-. .+++|+..||........+....+.+++.++.+-..
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence 34788999999988876666667777665433221 11111 168888888887665566778889999999988877
Q ss_pred cccCCCCCceEEEEEEEEeeccCCCCcE
Q 002810 842 MKSKDGESYVYDLFAISNHYGGLGGGHY 869 (877)
Q Consensus 842 v~~~~~~~~~YdL~AVinH~G~l~gGHY 869 (877)
+... .....++|..+++|+++...|||
T Consensus 557 ~~~~-~~~t~~~l~~~~~~~~s~~~~~~ 583 (842)
T KOG1870|consen 557 VLSG-AQSTEEDLLSVICHRTSRYSREP 583 (842)
T ss_pred ccCC-CcccccchhhHHhhcccccCCcC
Confidence 7653 25577999999999998887775
No 110
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=27.36 E-value=46 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=23.6
Q ss_pred ccCCCCCccceeEEEEEeec--CCCeEEEEEeceee
Q 002810 784 WYCPQCKEHRQATKKLDLWM--LPDVLVFHLKRFSY 817 (877)
Q Consensus 784 w~C~~Ck~~~~a~K~~~i~~--lP~iLiihLKRF~~ 817 (877)
|.||+|+...-..+++..-. +-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 78999998665555554432 44567888888865
No 111
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.55 E-value=2.4e+02 Score=24.30 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHhCCCCcceEEEEecCC
Q 002810 184 ASTRQLYEKVCKLRGIEQEKARIWDYFNK 212 (877)
Q Consensus 184 ~tv~~l~~~~~~~~~l~~~~~RlW~~~~~ 212 (877)
.++.||+.++|..|+++...++|..+..+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDG 49 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDG 49 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTT
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCC
Confidence 68999999999999999888998866444
No 112
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=26.33 E-value=1e+02 Score=27.66 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=36.3
Q ss_pred eeeeccceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCC---cceEEEEec
Q 002810 157 RVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQ---EKARIWDYF 210 (877)
Q Consensus 157 ~vEvyP~~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~---~~~RlW~~~ 210 (877)
.|-|||=.++.. ..-..+.+++.+|+++++..+.+.||+.. ++++|-...
T Consensus 4 ~iKVY~G~L~~~----~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ 56 (97)
T cd01783 4 VVKVYPGWLRVG----VAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVL 56 (97)
T ss_pred eEEEecCccccC----cceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEE
Confidence 456777666531 12247899999999999999999999874 456665553
No 113
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=26.10 E-value=3.1e+02 Score=25.43 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=39.6
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccC
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM 233 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~ 233 (877)
..+..-..+|+-+|++.+--+.+.++++=||| . .. .+|+ .++||.|+++..
T Consensus 14 iF~dakes~tVlelK~~iegI~k~pp~dQrL~-k-d~----qvLe-D~kTL~d~g~t~ 64 (119)
T cd01788 14 IFTDAKESTTVYELKRIVEGILKRPPEDQRLY-K-DD----QLLD-DGKTLGDCGFTS 64 (119)
T ss_pred EEeecCCcccHHHHHHHHHHHhcCChhHheee-c-Cc----eeec-ccccHHHcCccc
Confidence 34456678899999999999999999999999 2 11 4554 479999999843
No 114
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=26.04 E-value=4.6e+02 Score=23.43 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=44.8
Q ss_pred EEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCC
Q 002810 510 VFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENP 568 (877)
Q Consensus 510 ~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~ 568 (877)
++|......+.-+.++..|+.+-.++++.+....+|.....++++|+....-....-+|
T Consensus 15 IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwvL~p 73 (105)
T cd01779 15 IYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWVLDP 73 (105)
T ss_pred EccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeeecCc
Confidence 34433334456788899999999999999999999999999999999776544444333
No 115
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=25.93 E-value=2.7e+02 Score=22.50 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=37.7
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccc--cccCCCCeEEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIVAY 584 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i~~y 584 (877)
.+.+.+....++.+|++.++...++......++ |+++.. .| ...+ ..|.+++.|+++
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~---~~G~~L---~d-~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI---YNGKEL---DD-DKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE---ETTEEE---ST-TSBTGGGTTSTTEEEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceee---eeeecc---cC-cCcHHHcCCCCCCEEEEE
Confidence 567888999999999999999999776554333 444333 22 2333 346666655543
No 116
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=25.89 E-value=1.9e+02 Score=25.46 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=43.6
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCce
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ 236 (877)
.++....+.+-+..+++.|++.-|..-+-..+.+|+- |.+.. -+.++|+.|+...++..
T Consensus 32 qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL-~dG~r------I~~dqTP~dldmEdnd~ 90 (103)
T COG5227 32 QDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFL-FDGKR------IDLDQTPGDLDMEDNDE 90 (103)
T ss_pred CCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEE-Eccee------cCCCCChhhcCCccchH
Confidence 4455677888899999999999999888888888864 43322 13578898888776643
No 117
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.95 E-value=29 Score=40.69 Aligned_cols=107 Identities=17% Similarity=0.061 Sum_probs=52.4
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCC-CCccChHHHHH
Q 002810 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG-RAAVAPRAFKG 394 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~-~~~i~p~~~~~ 394 (877)
..-..|+.+.+|||+||+.+|.++.++.|.-..-..-...+...-...........+..+.+.+-... .....|. ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~ 152 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPFHQLDSTLLTHLAEATVCQQTLLKENPK-DRL 152 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhccchhhccchhhhhhhhhhccchhcccCCcc-ccc
Confidence 34568889999999999999999998866432211000000000000000001111111111111110 1111222 112
Q ss_pred HHhhhcCCCCCCCcccHHHHHHHHHHHHH
Q 002810 395 KLARFAPQFSGYNQHDSQELLAFLLDGLH 423 (877)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~ 423 (877)
......-.+.+..=+++.+|+..+|..|.
T Consensus 153 ~~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 153 VLSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred ccceeeecccccccccHHHHHHHHHHHhh
Confidence 22223345677788999999999999886
No 118
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=23.33 E-value=4.1e+02 Score=22.52 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=26.9
Q ss_pred EEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCc
Q 002810 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ 560 (877)
Q Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~ 560 (877)
+.+.+....++.+|++.+++..++.. ++..++-++.++
T Consensus 15 ~~~~v~~~~TV~~lK~~I~~~~~i~~-~~qrL~~~~~G~ 52 (80)
T cd01792 15 FLVSLRDSMTVSELKQQIAQKIGVPA-FQQRLAHLDSRE 52 (80)
T ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCH-HHEEEEeccCCC
Confidence 55677888999999999999988644 444444344443
No 119
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.12 E-value=2.8e+02 Score=26.66 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=45.5
Q ss_pred CCeEEEEEeceeecCC-----cccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEE
Q 002810 805 PDVLVFHLKRFSYSRY-----LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYT 870 (877)
Q Consensus 805 P~iLiihLKRF~~~~~-----~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYt 870 (877)
-.-+++-++||.+... ...++..-+.|- .-+.+...-...+....+..|.||..+-|...+||-+
T Consensus 34 ~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~-~V~~Vks~gi~~~~~d~vLsLLai~fe~~e~p~G~v~ 103 (138)
T PF11164_consen 34 ERRFALLLNRFRWEDAERRGRPPERVRSALRFD-RVLAVKSRGIDRKDPDAVLSLLAITFEPGEAPAGHVL 103 (138)
T ss_pred CCEEEEEeeeeEeccCccCCCCCcEEEEEEEEc-cEeeeeecCCCCCCCCceEEEEEEEEEeCCCCCcEEE
Confidence 3468899999999643 233556666666 4455544444444466899999999999988888865
No 120
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=22.00 E-value=4.3e+02 Score=22.48 Aligned_cols=66 Identities=11% Similarity=0.028 Sum_probs=42.8
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCC-CCccCChhhhhccCCceEEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL-DVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll-~~~~~tl~d~~l~~~q~ilve 240 (877)
+++......++..+++.++.+-+....+- ...+.|-.-+... .+- ++.++||.++++.....++|+
T Consensus 12 p~G~~~~~~F~~~~tl~~v~~fV~~~~~~-~~~f~L~t~fPrk---~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 12 LDGTTLKQTFKAREQLAAVRLFVELNTGN-GGPFTLMTPFPRK---VFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHcCCC-CCCEEEEeCCCCe---ECCcccccCCHHHCCCCCceEEEEe
Confidence 45555667888899999999888765432 2445543222221 121 245789999999988777775
No 121
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=21.49 E-value=88 Score=32.42 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=25.1
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCC---cceEEEEecCC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQ---EKARIWDYFNK 212 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~---~~~RlW~~~~~ 212 (877)
...+.+.+..||.||++.+.+..+++. .++|+|.....
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ 75 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNH 75 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETT
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECC
Confidence 357889999999999999999988865 47999988655
No 122
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.02 E-value=1.6e+02 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=26.0
Q ss_pred hchHHHHHHHHHHHhCCCCcceEEEEecCCC
Q 002810 183 KASTRQLYEKVCKLRGIEQEKARIWDYFNKQ 213 (877)
Q Consensus 183 ~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~ 213 (877)
..++++|+.++|..|+++...++|..+..+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGT 50 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGT 50 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 4689999999999999987788988775543
Done!