Query 002810
Match_columns 877
No_of_seqs 384 out of 2155
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 02:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 3.1E-67 1.1E-71 590.7 29.7 321 314-876 3-324 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 4.6E-64 1.6E-68 569.6 27.2 304 314-876 57-361 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 6.2E-60 2.1E-64 527.0 29.3 302 314-875 4-307 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 5.5E-59 1.9E-63 520.7 24.9 302 317-877 1-319 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 5.7E-54 2E-58 479.7 26.3 260 315-875 2-264 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 3E-53 1E-57 483.1 22.0 282 316-875 11-352 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 1.2E-51 4.2E-56 479.6 25.5 280 314-875 136-439 (476)
8 2f1z_A Ubiquitin carboxyl-term 100.0 5.9E-51 2E-55 478.4 24.9 261 314-875 170-433 (522)
9 1vjv_A Ubiquitin carboxyl-term 100.0 1.2E-50 4.3E-55 463.1 23.6 152 314-500 19-183 (415)
10 3ihp_A Ubiquitin carboxyl-term 100.0 4.9E-50 1.7E-54 489.8 25.5 156 313-501 338-513 (854)
11 3jyu_A Ubiquitin carboxyl-term 100.0 5.8E-38 2E-42 326.0 20.8 215 11-246 3-224 (231)
12 4a3p_A Ubiquitin carboxyl-term 100.0 1.5E-37 5.2E-42 320.1 21.5 204 19-245 3-211 (217)
13 1w6v_A Ubiquitin carboxyl-term 99.9 8E-25 2.7E-29 208.6 13.7 117 10-149 21-140 (141)
14 2vhf_A Ubiquitin carboxyl-term 99.9 1.8E-24 6.2E-29 232.7 10.1 99 318-423 8-112 (374)
15 2ylm_A Ubiquitin carboxyl-term 98.9 1.3E-07 4.4E-12 109.6 23.1 161 460-646 303-475 (530)
16 1wjn_A Tubulin-folding protein 91.9 0.58 2E-05 40.7 8.5 68 174-241 23-91 (97)
17 2kj6_A Tubulin folding cofacto 91.8 1.1 3.6E-05 39.1 9.9 64 175-239 28-92 (97)
18 4b6w_A Tubulin-specific chaper 91.3 0.34 1.2E-05 41.2 6.1 65 176-240 17-82 (86)
19 2uyz_B Small ubiquitin-related 90.9 0.98 3.3E-05 37.3 8.5 63 173-242 13-75 (79)
20 2kan_A Uncharacterized protein 90.9 0.98 3.4E-05 39.0 8.8 64 175-244 26-89 (94)
21 2kjr_A CG11242; UBL, ubiquitin 90.7 0.93 3.2E-05 39.3 8.4 65 175-240 29-93 (95)
22 3plu_A Ubiquitin-like modifier 90.7 0.99 3.4E-05 38.8 8.3 74 158-238 15-89 (93)
23 4dbg_A Ranbp-type and C3HC4-ty 90.4 0.77 2.6E-05 40.6 7.6 74 159-239 16-96 (105)
24 3a9j_A Ubiquitin; protein comp 89.9 1.3 4.4E-05 35.9 8.4 63 174-243 11-73 (76)
25 1wh3_A 59 kDa 2'-5'-oligoadeny 89.9 1.1 3.7E-05 37.8 8.1 64 175-245 19-82 (87)
26 3n3k_B Ubiquitin; hydrolase, p 89.7 0.8 2.7E-05 38.3 7.1 65 174-245 14-78 (85)
27 3phx_B Ubiquitin-like protein 89.7 2 6.7E-05 35.4 9.4 64 172-242 13-76 (79)
28 1wyw_B Ubiquitin-like protein 89.6 1.4 4.9E-05 38.1 8.8 71 165-242 22-93 (97)
29 3k9o_B Ubiquitin, UBB+1; E2-25 89.3 1.4 4.6E-05 38.0 8.4 67 173-246 11-77 (96)
30 3a4r_A Nfatc2-interacting prot 89.2 1.8 6E-05 36.1 8.7 56 175-237 20-75 (79)
31 1ndd_A NEDD8, protein (ubiquit 89.1 1.6 5.5E-05 35.3 8.4 63 174-243 11-73 (76)
32 1wx7_A Ubiquilin 3; ubiquitin- 89.1 1.8 6.1E-05 38.1 9.2 62 176-244 29-90 (106)
33 3mtn_B UBA80, ubcep1, ubiquiti 89.0 1.3 4.4E-05 37.0 7.8 65 173-244 13-77 (85)
34 1yqb_A Ubiquilin 3; structural 88.9 1.9 6.6E-05 37.6 9.1 61 175-242 33-93 (100)
35 2hj8_A Interferon-induced 17 k 88.7 2.1 7.3E-05 36.2 9.1 64 174-244 15-78 (88)
36 1sif_A Ubiquitin; hydrophobic 88.6 1.1 3.8E-05 38.0 7.2 65 173-244 19-83 (88)
37 3v6c_B Ubiquitin; structural g 88.6 1.3 4.4E-05 37.8 7.7 61 173-240 27-87 (91)
38 2l7r_A Ubiquitin-like protein 88.4 1.2 4E-05 38.4 7.3 63 173-242 27-89 (93)
39 2bwf_A Ubiquitin-like protein 88.4 1.7 5.7E-05 35.5 8.0 62 172-240 12-73 (77)
40 4fbj_B NEDD8; effector-HOST ta 87.9 1.3 4.4E-05 37.7 7.1 66 173-245 10-75 (88)
41 1j8c_A Ubiquitin-like protein 87.4 2 6.8E-05 39.2 8.6 65 173-244 41-105 (125)
42 4hcn_B Polyubiquitin, ubiquiti 87.3 1.5 5.2E-05 38.0 7.4 64 172-242 31-94 (98)
43 3dbh_I NEDD8; cell cycle, acti 87.1 1.3 4.6E-05 37.2 6.8 64 172-242 21-84 (88)
44 1wy8_A NP95-like ring finger p 87.0 3.8 0.00013 34.5 9.6 63 175-244 20-83 (89)
45 3vdz_A Ubiquitin-40S ribosomal 86.9 2.5 8.5E-05 37.6 8.7 65 172-243 44-108 (111)
46 2eke_C Ubiquitin-like protein 86.6 1.8 6.1E-05 38.3 7.4 68 165-239 32-99 (106)
47 1v5o_A 1700011N24RIK protein; 86.5 1.7 5.7E-05 38.1 7.3 62 175-242 23-84 (102)
48 1wxv_A BAG-family molecular ch 86.5 2.1 7.3E-05 36.5 7.8 62 173-240 16-82 (92)
49 2klc_A Ubiquilin-1; ubiquitin- 86.4 2.6 8.8E-05 36.8 8.4 63 173-242 34-96 (101)
50 4dwf_A HLA-B-associated transc 86.4 2.6 8.8E-05 35.7 8.2 61 173-241 15-75 (90)
51 1yx5_B Ubiquitin; proteasome, 86.3 2.7 9.1E-05 36.3 8.4 65 174-245 11-75 (98)
52 1wju_A NEDD8 ultimate buster-1 86.1 2.4 8.3E-05 37.0 7.9 59 174-239 30-88 (100)
53 2io0_B Small ubiquitin-related 86.0 3 0.0001 35.8 8.3 61 172-239 14-74 (91)
54 2kd0_A LRR repeats and ubiquit 86.0 1.8 6.2E-05 36.5 6.9 59 174-239 22-80 (85)
55 2daf_A FLJ35834 protein; hypot 85.7 4 0.00014 36.5 9.1 77 161-244 14-90 (118)
56 2io1_B Small ubiquitin-related 85.0 2.6 9E-05 36.3 7.6 61 172-239 16-76 (94)
57 1wm3_A Ubiquitin-like protein 84.9 2.6 9E-05 34.2 7.2 59 172-237 10-68 (72)
58 1t0y_A Tubulin folding cofacto 84.7 3 0.0001 37.8 8.2 66 175-240 19-84 (122)
59 1v6e_A Cytoskeleton-associated 84.5 2.1 7.3E-05 36.8 6.9 65 175-239 20-84 (95)
60 2ojr_A Ubiquitin; lanthide-bin 84.4 3.8 0.00013 36.3 8.7 64 173-243 45-108 (111)
61 2d07_B Ubiquitin-like protein 84.1 3.9 0.00013 35.1 8.3 61 172-239 26-86 (93)
62 2faz_A Ubiquitin-like containi 84.0 4.8 0.00016 32.8 8.6 58 177-241 17-75 (78)
63 2kdi_A Ubiquitin, vacuolar pro 84.0 3.1 0.00011 37.2 7.9 66 173-245 19-84 (114)
64 4eew_A Large proline-rich prot 83.9 3.9 0.00013 34.4 8.2 60 172-239 26-85 (88)
65 3m63_B Ubiquitin domain-contai 83.5 1 3.4E-05 39.6 4.3 61 172-239 36-96 (101)
66 1wx8_A Riken cDNA 4931431F19; 83.1 2.1 7E-05 36.9 6.2 61 173-240 26-86 (96)
67 2kk8_A Uncharacterized protein 83.1 4.5 0.00015 33.9 8.1 61 174-240 21-81 (84)
68 1we6_A Splicing factor, putati 82.9 4.1 0.00014 36.1 8.2 63 175-244 42-105 (111)
69 4ajy_B Transcription elongatio 82.6 3.2 0.00011 37.3 7.2 64 175-245 13-83 (118)
70 3kyd_D Small ubiquitin-related 82.4 5 0.00017 35.9 8.4 70 163-239 39-109 (115)
71 2wyq_A HHR23A, UV excision rep 82.2 5.5 0.00019 33.0 8.4 62 173-241 15-79 (85)
72 2fnj_B Transcription elongatio 82.0 4 0.00014 36.8 7.6 64 175-245 13-83 (118)
73 1uh6_A Ubiquitin-like 5; beta- 81.7 4.4 0.00015 35.4 7.6 61 173-240 38-98 (100)
74 2jxx_A Nfatc2-interacting prot 81.7 5.8 0.0002 34.4 8.3 56 175-237 38-93 (97)
75 2dzi_A Ubiquitin-like protein 81.6 4 0.00014 33.5 7.2 60 174-240 18-77 (81)
76 1wz0_A Ubiquitin-like protein 81.2 3.6 0.00012 36.2 7.0 61 172-239 33-93 (104)
77 2k8h_A Small ubiquitin protein 80.9 5.3 0.00018 35.5 8.0 61 172-239 35-95 (110)
78 1we7_A SF3A1 protein; structur 80.2 5.4 0.00019 35.6 8.1 63 176-245 48-110 (115)
79 3m62_B UV excision repair prot 79.0 3.4 0.00012 36.4 6.2 63 173-242 11-73 (106)
80 1v86_A DNA segment, CHR 7, way 77.6 4.2 0.00014 35.0 6.2 59 173-239 26-84 (95)
81 3pge_A SUMO-modified prolifera 77.2 6.1 0.00021 39.0 7.9 69 163-240 30-98 (200)
82 1uel_A HHR23B, UV excision rep 76.7 9.3 0.00032 32.7 8.2 62 174-242 11-75 (95)
83 1ttn_A DC-UBP, dendritic cell- 76.2 4.7 0.00016 35.4 6.3 61 174-241 34-94 (106)
84 3u30_A Ubiquitin, linear DI-ub 75.3 9.2 0.00031 36.6 8.7 67 172-245 29-95 (172)
85 1wgd_A Homocysteine-responsive 75.1 12 0.0004 31.8 8.4 60 176-242 22-85 (93)
86 3tix_A Ubiquitin-like protein 74.7 5.1 0.00017 39.0 6.4 68 163-239 58-125 (207)
87 2kzr_A Ubiquitin thioesterase 74.1 3.5 0.00012 34.7 4.6 63 175-240 11-75 (86)
88 3qx1_A FAS-associated factor 1 74.0 11 0.00038 31.4 7.8 68 171-242 15-83 (84)
89 3rt3_B Ubiquitin-like protein 74.0 12 0.0004 35.2 9.0 65 173-244 91-155 (159)
90 3l0w_B Monoubiquitinated proli 73.5 11 0.00037 36.2 8.6 66 173-245 10-75 (169)
91 3q3f_A Ribonuclease/ubiquitin 73.1 14 0.00047 36.2 9.2 77 160-244 103-179 (189)
92 3goe_A DNA repair protein RAD6 72.8 15 0.00052 30.2 7.7 60 171-237 17-77 (82)
93 2daj_A KIAA0977 protein, COBL- 72.4 6.6 0.00023 32.7 5.5 65 164-232 10-75 (91)
94 2pjh_A Protein NPL4, nuclear p 72.0 3 0.0001 34.8 3.6 66 173-240 13-78 (80)
95 3b08_A Polyubiquitin-C, ubiqui 71.9 9.7 0.00033 35.3 7.8 63 174-243 87-149 (152)
96 1v2y_A 3300001G02RIK protein; 71.1 9.4 0.00032 33.6 6.8 66 172-243 16-96 (105)
97 3rt3_B Ubiquitin-like protein 68.5 20 0.00067 33.7 9.2 65 173-242 12-76 (159)
98 1v5t_A 8430435I17RIK protein; 67.8 8.1 0.00028 32.7 5.6 59 175-239 18-79 (90)
99 2kvr_A Ubiquitin carboxyl-term 67.5 6.2 0.00021 36.2 5.0 39 176-214 58-96 (130)
100 1wgg_A Ubiquitin carboxyl-term 67.3 5.4 0.00018 34.4 4.4 58 174-239 17-75 (96)
101 1wf9_A NPL4 family protein; be 67.2 5.1 0.00017 35.3 4.3 67 174-240 17-92 (107)
102 2al3_A TUG long isoform; TUG U 65.0 7.7 0.00026 33.0 4.7 36 172-207 18-53 (90)
103 3b08_A Polyubiquitin-C, ubiqui 64.5 21 0.00071 32.9 8.4 64 174-244 11-74 (152)
104 2lxa_A Ubiquitin-like protein 62.4 10 0.00035 32.1 5.1 55 179-240 19-75 (87)
105 4a20_A Ubiquitin-like protein 61.6 19 0.00064 31.2 6.7 57 177-240 35-93 (98)
106 2dzm_A FAS-associated factor 1 60.8 20 0.00067 31.2 6.7 61 173-239 18-78 (100)
107 1x1m_A Ubiquitin-like protein 60.1 17 0.00058 31.8 6.4 51 183-240 44-97 (107)
108 3u5e_m 60S ribosomal protein L 56.9 2.3 7.7E-05 39.0 0.0 64 175-245 12-75 (128)
109 2dzk_A UBX domain-containing p 56.3 44 0.0015 29.3 8.4 68 170-241 20-89 (109)
110 3b1l_X E3 ubiquitin-protein li 60.6 2.4 8.3E-05 34.4 0.0 58 176-240 13-70 (76)
111 3u30_A Ubiquitin, linear DI-ub 55.2 19 0.00064 34.4 6.3 63 173-242 106-168 (172)
112 1wia_A Hypothetical ubiquitin- 51.5 17 0.00057 30.9 4.7 57 175-240 19-75 (95)
113 2l76_A Nfatc2-interacting prot 50.7 46 0.0016 28.5 7.1 66 163-237 22-87 (95)
114 2cr5_A Reproduction 8; UBX dom 49.8 93 0.0032 27.1 9.5 70 170-243 30-99 (109)
115 3ai5_A Yeast enhanced green fl 47.3 44 0.0015 35.2 8.0 61 173-240 243-303 (307)
116 2kdb_A Homocysteine-responsive 47.1 46 0.0016 28.7 6.9 55 176-237 38-96 (99)
117 3u5c_f 40S ribosomal protein S 47.0 4.1 0.00014 38.5 0.0 64 175-245 12-75 (152)
118 1qmy_A Protease, leader protea 46.7 9.2 0.00032 34.9 2.3 23 317-339 11-33 (167)
119 1wj4_A KIAA0794 protein; UBX d 41.1 71 0.0024 28.7 7.4 69 170-242 50-119 (124)
120 2gow_A HCG-1 protein, ubiquiti 41.0 56 0.0019 29.5 6.7 61 173-240 27-95 (125)
121 1wgh_A Ubiquitin-like 3, HCG-1 39.2 88 0.003 27.8 7.6 60 174-240 27-94 (116)
122 1oey_A P67-PHOX, neutrophil cy 39.1 82 0.0028 26.3 6.8 55 174-230 14-68 (83)
123 3plu_A Ubiquitin-like modifier 37.3 1.8E+02 0.0062 24.7 8.8 59 521-585 33-92 (93)
124 4hcn_B Polyubiquitin, ubiquiti 37.0 1.3E+02 0.0043 25.4 8.2 45 504-552 21-65 (98)
125 3mtn_B UBA80, ubcep1, ubiquiti 36.3 1.6E+02 0.0056 23.5 8.7 56 521-583 15-72 (85)
126 2dzj_A Synaptic glycoprotein S 35.6 37 0.0013 28.5 4.3 58 177-239 26-85 (88)
127 3v7o_A Minor nucleoprotein VP3 34.3 8.4 0.00029 38.1 0.0 60 171-237 28-87 (227)
128 4b6w_A Tubulin-specific chaper 33.9 1.3E+02 0.0044 25.0 7.4 64 521-584 16-81 (86)
129 1wju_A NEDD8 ultimate buster-1 32.7 2.3E+02 0.008 24.3 9.0 61 520-586 30-91 (100)
130 1wgr_A Growth factor receptor- 32.0 1.9E+02 0.0067 24.9 8.3 62 504-569 8-70 (100)
131 3uf8_A Ubiquitin-like protein 31.7 87 0.003 30.9 7.0 62 171-239 28-89 (209)
132 1oqy_A HHR23A, UV excision rep 31.6 75 0.0026 34.4 7.0 63 175-244 19-85 (368)
133 1c1y_B Proto-onkogene serine/t 31.3 2E+02 0.0069 23.5 7.6 40 171-210 9-48 (77)
134 2kj6_A Tubulin folding cofacto 31.1 2.4E+02 0.0081 24.0 8.8 64 520-583 27-92 (97)
135 3k9o_B Ubiquitin, UBB+1; E2-25 30.6 2E+02 0.007 23.7 8.4 58 521-584 13-71 (96)
136 2ylm_A Ubiquitin carboxyl-term 30.5 41 0.0014 38.4 4.9 67 176-242 38-111 (530)
137 3v6c_B Ubiquitin; structural g 29.9 2.3E+02 0.0079 23.2 9.2 70 504-583 16-86 (91)
138 2l05_A Serine/threonine-protei 29.7 2.3E+02 0.0077 24.2 7.9 72 164-242 19-90 (95)
139 1se9_A Ubiquitin family; ubiqu 28.7 1.3E+02 0.0046 27.1 7.0 51 177-234 31-88 (126)
140 2cr8_A MDM4 protein; ZF-ranbp 28.6 21 0.00072 26.6 1.3 15 779-793 7-21 (53)
141 2kjr_A CG11242; UBL, ubiquitin 26.5 2.9E+02 0.0099 23.3 9.9 62 520-582 28-91 (95)
142 1v5o_A 1700011N24RIK protein; 26.5 2.5E+02 0.0086 23.8 8.3 57 521-583 23-81 (102)
143 3shq_A UBLCP1; phosphatase, hy 26.4 61 0.0021 34.3 5.1 64 172-239 13-76 (320)
144 1rrb_A RAF-1 RBD, RAF proto-on 25.9 3.3E+02 0.011 23.7 9.7 75 165-243 21-95 (107)
145 1wjn_A Tubulin-folding protein 25.1 2E+02 0.0069 24.1 7.4 64 521-584 24-90 (97)
146 3mp2_A Non-structural protein 24.4 89 0.0031 30.8 5.3 70 317-419 11-80 (211)
147 1sif_A Ubiquitin; hydrophobic 24.3 2.9E+02 0.01 22.5 8.5 67 506-583 10-78 (88)
148 2c6a_A Ubiquitin-protein ligas 23.3 24 0.00081 25.8 0.7 17 777-793 7-23 (46)
149 2uyz_B Small ubiquitin-related 23.3 2.2E+02 0.0074 22.5 6.9 58 521-584 15-73 (79)
150 1wxm_A A-RAF proto-oncogene se 23.2 3.2E+02 0.011 22.8 7.6 66 171-242 15-80 (86)
151 2kd0_A LRR repeats and ubiquit 22.8 2.3E+02 0.008 23.1 7.1 55 521-582 23-79 (85)
152 2hj8_A Interferon-induced 17 k 21.8 3.3E+02 0.011 22.2 8.2 68 506-584 5-74 (88)
153 2bps_A YUKD protein; ubiquitin 21.7 72 0.0024 26.5 3.5 66 171-239 14-80 (81)
154 3vdz_A Ubiquitin-40S ribosomal 20.8 4E+02 0.014 22.9 8.7 56 521-583 47-104 (111)
155 2fe8_A PP1AB, ORF1AB, replicas 20.6 1.4E+02 0.0047 31.5 6.2 76 316-420 99-175 (315)
156 1wh3_A 59 kDa 2'-5'-oligoadeny 20.6 3.3E+02 0.011 21.8 8.2 56 521-583 19-76 (87)
157 1yqb_A Ubiquilin 3; structural 20.5 3.5E+02 0.012 22.8 8.0 68 504-583 21-90 (100)
158 1v6e_A Cytoskeleton-associated 20.3 3.7E+02 0.013 22.3 9.8 34 520-553 19-52 (95)
159 2con_A RUH-035 protein, NIN on 20.2 31 0.0011 28.5 0.9 36 782-818 29-66 (79)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-67 Score=590.72 Aligned_cols=321 Identities=61% Similarity=1.091 Sum_probs=286.2
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 392 (877)
.+.+|++||.|+||||||||+||||+|+|+|+++|+.. +...++..++.+..+.++.+|+.|+..||.+...+++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 35689999999999999999999999999999999987 66677778888888999999999999999988899999999
Q ss_pred HHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEE
Q 002810 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (877)
Q Consensus 393 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~ 472 (877)
+.++++..|.|.+++||||||||.+|||.||+++++..++++.+..+.++.++...+.+.|..+..++.|+|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEE
Q 002810 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (877)
Q Consensus 473 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 552 (877)
+++++|..|+++|.++|+|++|+|+||......+.+.+
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------ 200 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------ 200 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC----------------------------------------------------
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee------------------------------------------
Confidence 99999999999999999999999999975421000000
Q ss_pred EEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCC
Q 002810 553 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 632 (877)
Q Consensus 553 ~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~ 632 (877)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCc
Q 002810 633 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 712 (877)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (877)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcc
Q 002810 713 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 792 (877)
Q Consensus 713 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~ 792 (877)
|.+. ......++|++||+.|+++|.|+++|.|+|++|+++
T Consensus 201 ----------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~ 240 (367)
T 2y6e_A 201 ----------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH 240 (367)
T ss_dssp -------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred ----------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence 0000 000124589999999999999999999999999999
Q ss_pred ceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEEEE
Q 002810 793 RQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAY 872 (877)
Q Consensus 793 ~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYtAy 872 (877)
+.|+|++.|+++|+|||||||||.++++.+.|+++.|+||++.|||++|+..+...+..|+|+|||+|.|++++|||+||
T Consensus 241 ~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~ 320 (367)
T 2y6e_A 241 QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAY 320 (367)
T ss_dssp ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEE
T ss_pred ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEE
Confidence 99999999999999999999999999888899999999997789999999987767789999999999999999999999
Q ss_pred EEeC
Q 002810 873 AKVN 876 (877)
Q Consensus 873 ~k~~ 876 (877)
+|+.
T Consensus 321 ~~~~ 324 (367)
T 2y6e_A 321 AKNK 324 (367)
T ss_dssp EECT
T ss_pred EEcC
Confidence 9974
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=4.6e-64 Score=569.57 Aligned_cols=304 Identities=48% Similarity=0.882 Sum_probs=274.5
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 392 (877)
...+|++||.|+||||||||+||||+|+|+|++||+.. +...++..++++..+.++.+|+.|++.||.+....++|..|
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f 136 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDF 136 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHH
T ss_pred CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHH
Confidence 34689999999999999999999999999999999986 55566777777778899999999999999988889999999
Q ss_pred HHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEE
Q 002810 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (877)
Q Consensus 393 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~ 472 (877)
+.+++...+.|.+++||||||||.+|||.||+++++..++++.+..+.++.++...++..|..+..++.|+|.++|+|++
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l 216 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQF 216 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEE
Confidence 99999999999999999999999999999999998877766666666677788889999999999999999999999999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEE
Q 002810 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (877)
Q Consensus 473 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 552 (877)
+++++|..|++.|.++|+|++|+|+||...
T Consensus 217 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~-------------------------------------------------- 246 (396)
T 2gfo_A 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTS-------------------------------------------------- 246 (396)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCSCSS--------------------------------------------------
T ss_pred EEEEEeCCCCceecccccceeeeecccccc--------------------------------------------------
Confidence 999999999999999999999999997431
Q ss_pred EEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCC
Q 002810 553 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 632 (877)
Q Consensus 553 ~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~ 632 (877)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCc
Q 002810 633 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 712 (877)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (877)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcc
Q 002810 713 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 792 (877)
Q Consensus 713 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~ 792 (877)
..+|++||+.|+++|.|+++|.|+|++|+.+
T Consensus 247 -------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~ 277 (396)
T 2gfo_A 247 -------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFYCSHCRAR 277 (396)
T ss_dssp -------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEEETTTTEE
T ss_pred -------------------------------------------------cCCHHHHHHHhCCcccccCCcccccCCcccc
Confidence 0279999999999999999999999999999
Q ss_pred ceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEEEE
Q 002810 793 RQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAY 872 (877)
Q Consensus 793 ~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYtAy 872 (877)
+.|+|++.|+++|+|||||||||.++..++.|+++.|+||++.|||++|+..+......|+|+|||+|.|++++|||+||
T Consensus 278 ~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~ 357 (396)
T 2gfo_A 278 RDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAY 357 (396)
T ss_dssp ECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEE
T ss_pred cceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCCCCCCceEEE
Confidence 99999999999999999999999999877899999999998889999999876656788999999999999999999999
Q ss_pred EEeC
Q 002810 873 AKVN 876 (877)
Q Consensus 873 ~k~~ 876 (877)
+|+.
T Consensus 358 v~~~ 361 (396)
T 2gfo_A 358 CKNA 361 (396)
T ss_dssp EEET
T ss_pred EcCC
Confidence 9974
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=6.2e-60 Score=526.95 Aligned_cols=302 Identities=43% Similarity=0.778 Sum_probs=271.8
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRA 391 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~ 391 (877)
.+.+|++||.|+||||||||+||||+|+|+||++++.. +....+.. .....+++++|+.|++.|| .+....++|..
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG--SNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS--CCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC--CCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 45689999999999999999999999999999999876 43333322 2346789999999999999 56678999999
Q ss_pred HHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEE
Q 002810 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (877)
Q Consensus 392 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~ 471 (877)
|+.+++...+.|.+++||||||||.+|||.||+++++...++.....+.+..++.+.+...|..+..++.++|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 99999999999999999999999999999999999988777766666777788888999999999999999999999999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcE
Q 002810 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 551 (877)
Q Consensus 472 ~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 551 (877)
++++++|..|++.+.++|+|++|+|+||....
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~------------------------------------------------ 193 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY------------------------------------------------ 193 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCS------------------------------------------------
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCccc------------------------------------------------
Confidence 99999999999999999999999999974320
Q ss_pred EEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCC
Q 002810 552 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 631 (877)
Q Consensus 552 ~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~ 631 (877)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCC
Q 002810 632 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 711 (877)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (877)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCc
Q 002810 712 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 791 (877)
Q Consensus 712 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~ 791 (877)
..++|++||+.|+.+|.|+++|.|+|++|+.
T Consensus 194 -------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~ 224 (348)
T 3nhe_A 194 -------------------------------------------------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRG 224 (348)
T ss_dssp -------------------------------------------------SCEEHHHHHHHHHSCEEECGGGCCEETTTTE
T ss_pred -------------------------------------------------CCCCHHHHHHHhcCceEecCCCceECCCCCC
Confidence 1138999999999999999999999999999
Q ss_pred cceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEEE
Q 002810 792 HRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTA 871 (877)
Q Consensus 792 ~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYtA 871 (877)
++.|+|++.|+++|+||+||||||.+......|+.+.|+||++.|||++|+.... ....|+|+|||+|.|++.+|||+|
T Consensus 225 ~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~-~~~~Y~L~avv~H~G~~~~GHY~~ 303 (348)
T 3nhe_A 225 RKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT-NHAVYNLYAVSNHSGTTMGGHYTA 303 (348)
T ss_dssp ECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC-CCCEEEEEEEEEEEECSSCEEEEE
T ss_pred cccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC-CCCcEEEEEEEEccCCCCCcccEE
Confidence 9999999999999999999999999998888999999999988899999997544 557899999999999999999999
Q ss_pred EEEe
Q 002810 872 YAKV 875 (877)
Q Consensus 872 y~k~ 875 (877)
|+|+
T Consensus 304 ~~~~ 307 (348)
T 3nhe_A 304 YCRS 307 (348)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9997
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=5.5e-59 Score=520.74 Aligned_cols=302 Identities=38% Similarity=0.666 Sum_probs=252.3
Q ss_pred CCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCC-CccChHHHHH
Q 002810 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGR-AAVAPRAFKG 394 (877)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-~~i~p~~~~~ 394 (877)
.|++||.|+||||||||+||||+|+|+||++|+.. +...... .+...+++.+|+.|+..||.+.. .+++|..|+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~ 77 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG---GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRA 77 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC---CCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 38999999999999999999999999999999875 2222221 12345799999999999998764 7899999999
Q ss_pred HHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccc---------------cCCCCCChHHHhHHHHhhcccc
Q 002810 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEM---------------KDSGGRPDEEVANECWKNHKAR 459 (877)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~---------------~~~~~~~~~~~a~~~w~~~~~~ 459 (877)
++++..+.|.+++||||||||.+|||.||+++++..++..... .......+...+...|..+..+
T Consensus 78 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T 3i3t_A 78 VFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER 157 (355)
T ss_dssp HHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999987654322111 1112234566788899999999
Q ss_pred CCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHH
Q 002810 460 NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL 539 (877)
Q Consensus 460 ~~sii~~lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~ 539 (877)
+.|+|.++|+|+++++++|..|++.+.++|+|++|+|+||....
T Consensus 158 ~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~------------------------------------ 201 (355)
T 3i3t_A 158 EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF------------------------------------ 201 (355)
T ss_dssp CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC---------------------------------------
T ss_pred cCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCcccc------------------------------------
Confidence 99999999999999999999999999999999999999985320
Q ss_pred HhHcCCCCCCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceec
Q 002810 540 STACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 619 (877)
Q Consensus 540 ~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (877)
T Consensus 202 -------------------------------------------------------------------------------- 201 (355)
T 3i3t_A 202 -------------------------------------------------------------------------------- 201 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEE
Q 002810 620 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 699 (877)
Q Consensus 620 g~P~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (877)
T Consensus 202 -------------------------------------------------------------------------------- 201 (355)
T 3i3t_A 202 -------------------------------------------------------------------------------- 201 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcCCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCC
Q 002810 700 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 779 (877)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~ 779 (877)
....++|++||+.|+++|.|+
T Consensus 202 -----------------------------------------------------------~~~~~sl~~~L~~~~~~e~l~ 222 (355)
T 3i3t_A 202 -----------------------------------------------------------AGGKVSLRDCFNLFTKEEELE 222 (355)
T ss_dssp ---------------------------------------------------------------CBHHHHHHHHHCCEEEC
T ss_pred -----------------------------------------------------------ccCccCHHHHHHHhCCccccC
Confidence 001248999999999999999
Q ss_pred CCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEE
Q 002810 780 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISN 859 (877)
Q Consensus 780 ~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVin 859 (877)
++|+|+|++|++++.|+|++.|+++|+||+||||||.++++...|+++.|+||++.|||++|+.... +...|+|+|||+
T Consensus 223 ~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~ 301 (355)
T 3i3t_A 223 SENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCN 301 (355)
T ss_dssp GGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEE
T ss_pred CCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEE
Confidence 9999999999999999999999999999999999999998888999999999998899999987654 457899999999
Q ss_pred eeccCCCCcEEEEEEeCC
Q 002810 860 HYGGLGGGHYTAYAKVNA 877 (877)
Q Consensus 860 H~G~l~gGHYtAy~k~~~ 877 (877)
|.|++++|||+||+|.++
T Consensus 302 H~G~~~~GHY~~~~~~~~ 319 (355)
T 3i3t_A 302 HSGSVHYGHYTALCRCQT 319 (355)
T ss_dssp EEEETTEEEEEEEEEETT
T ss_pred ecCCCCCCeEEEEEEcCC
Confidence 999999999999999753
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=5.7e-54 Score=479.69 Aligned_cols=260 Identities=25% Similarity=0.405 Sum_probs=222.8
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002810 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (877)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (877)
+.+|++||.|+||||||||+||||+|+|+||++|+...... .....++.++|+.||..|+.+. .+++|..|+.
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 74 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHh
Confidence 35799999999999999999999999999999997541110 1123468899999999999854 6789999998
Q ss_pred HHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEE
Q 002810 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (877)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 474 (877)
.++. +.|.+++||||||||.+|||.||++++.. ...++|.++|+|++++
T Consensus 75 ~~~~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------------------~~~s~i~~~F~g~~~~ 123 (353)
T 1nb8_A 75 SFGW--ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 123 (353)
T ss_dssp HHTC--CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred hcCC--CCCCcccchhHHHHHHHHHHHHHHHhcCC-----------------------------CccchhhhhceeEEEE
Confidence 8863 78999999999999999999999987421 1356799999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEE
Q 002810 475 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (877)
Q Consensus 475 ~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 554 (877)
+++|..|++.|.++|+|++|+|+||...
T Consensus 124 ~i~C~~C~~~s~~~e~f~~LsL~i~~~~---------------------------------------------------- 151 (353)
T 1nb8_A 124 YIQCKEVDYRSDRREDYYDIQLSIKGKK---------------------------------------------------- 151 (353)
T ss_dssp EEEESSSCCEEEEEEEESCEEECCTTCS----------------------------------------------------
T ss_pred EEEeccCCCeeceeeeeEEEEEEECCCc----------------------------------------------------
Confidence 9999999999999999999999987311
Q ss_pred EEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCH
Q 002810 555 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 634 (877)
Q Consensus 555 e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~ 634 (877)
T Consensus 152 -------------------------------------------------------------------------------- 151 (353)
T 1nb8_A 152 -------------------------------------------------------------------------------- 151 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccC
Q 002810 635 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714 (877)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (877)
T Consensus 152 -------------------------------------------------------------------------------- 151 (353)
T 1nb8_A 152 -------------------------------------------------------------------------------- 151 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccce
Q 002810 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794 (877)
Q Consensus 715 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~ 794 (877)
+|.+||+.|+.+|.|+++|.|+|+.|+ ++.
T Consensus 152 -------------------------------------------------~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~ 181 (353)
T 1nb8_A 152 -------------------------------------------------NIFESFVDYVAVEQLDGDNKYDAGEHG-LQE 181 (353)
T ss_dssp -------------------------------------------------BHHHHHHHHTCCEEECTTTCEECGGGC-EEC
T ss_pred -------------------------------------------------chHHHHHHhhCccccCCCccccCCcCc-cEe
Confidence 688999999999999999999999995 788
Q ss_pred eEEEEEeecCCCeEEEEEeceeecC--CcccccceeEeccCCCCCcccccccCC-CCCceEEEEEEEEeeccCCCCcEEE
Q 002810 795 ATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYTA 871 (877)
Q Consensus 795 a~K~~~i~~lP~iLiihLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~v~~~~-~~~~~YdL~AVinH~G~l~gGHYtA 871 (877)
|+|++.|+++|+||+||||||.++. +.+.|+++.|+|| +.|||++|+.... ..+..|+|+|||+|.|++++|||+|
T Consensus 182 a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a 260 (353)
T 1nb8_A 182 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 260 (353)
T ss_dssp EEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEE
T ss_pred eEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECC-CeeehhhhhcccCCCCCceEEEEEEEEEeCCCCCcEEEE
Confidence 9999999999999999999999975 4578999999999 5999999998643 2467899999999999999999999
Q ss_pred EEEe
Q 002810 872 YAKV 875 (877)
Q Consensus 872 y~k~ 875 (877)
|+|+
T Consensus 261 ~v~~ 264 (353)
T 1nb8_A 261 YLNP 264 (353)
T ss_dssp EECT
T ss_pred EEec
Confidence 9985
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=3e-53 Score=483.10 Aligned_cols=282 Identities=24% Similarity=0.368 Sum_probs=226.8
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 002810 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 395 (877)
..+++||.|+||||||||+||||+|+|+||++|+.... ......+.....+++++|+.||..||.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAG-ALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCC-CC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhccc-ccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 56799999999999999999999999999999987521 11111223346789999999999999865 89999999999
Q ss_pred HhhhcCCCC------CCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCcccccee
Q 002810 396 LARFAPQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQ 469 (877)
Q Consensus 396 l~~~~~~F~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~ 469 (877)
++...|.|. +++||||||||.+|||.||++++.....+. .+..+...|..+...+.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~----------~e~~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV----------KETDSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc----------cccchhhhhhhhccccCchhhhhcc
Confidence 999999997 589999999999999999999865332111 0112345688888888999999999
Q ss_pred EEEEEEEEcCCCCCee--eeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCC
Q 002810 470 GQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI 547 (877)
Q Consensus 470 G~~~s~~~C~~C~~~s--~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 547 (877)
|+++++++|..|++.+ .++|+|++|+|+||...
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~--------------------------------------------- 193 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQEV--------------------------------------------- 193 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSC---------------------------------------------
T ss_pred EEEEEEEEecCCCCccCceeeccCceEEeecCCCc---------------------------------------------
Confidence 9999999999999995 79999999999987321
Q ss_pred CCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEe
Q 002810 548 DEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYL 627 (877)
Q Consensus 548 ~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i 627 (877)
T Consensus 194 -------------------------------------------------------------------------------- 193 (404)
T 2ayn_A 194 -------------------------------------------------------------------------------- 193 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCC
Q 002810 628 EEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISS 707 (877)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (877)
T Consensus 194 -------------------------------------------------------------------------------- 193 (404)
T 2ayn_A 194 -------------------------------------------------------------------------------- 193 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCC
Q 002810 708 CKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCP 787 (877)
Q Consensus 708 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~ 787 (877)
.+|++||+.|+.+| |. |+|+
T Consensus 194 -------------------------------------------------------~~l~~~L~~~~~e~-l~----~~c~ 213 (404)
T 2ayn_A 194 -------------------------------------------------------KYLFTGLKLRLQEE-IT----KQSP 213 (404)
T ss_dssp -------------------------------------------------------CBHHHHHHHTTEEC-CC----CEET
T ss_pred -------------------------------------------------------ccHHHHHHHhcccc-ee----ecch
Confidence 16899999998744 42 8999
Q ss_pred CCCccceeEEEEEeecCCCeEEEEEeceeecCC--cccccceeEeccCCCCCcccccccC--------------------
Q 002810 788 QCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSK-------------------- 845 (877)
Q Consensus 788 ~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~v~~~-------------------- 845 (877)
+|++.+.|+|++.|+++|+||+||||||.++.. .+.|+++.|.||. .|||++|+...
T Consensus 214 ~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (404)
T 2ayn_A 214 TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKDLEDKKV 292 (404)
T ss_dssp TTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTCTTC---
T ss_pred hhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCc-eeEHhHhcChhhhhhcchhhhHHhhhhcccc
Confidence 999999999999999999999999999999864 5689999999995 89999998641
Q ss_pred -----------------------------CCCCceEEEEEEEEeec-cCCCCcEEEEEEe
Q 002810 846 -----------------------------DGESYVYDLFAISNHYG-GLGGGHYTAYAKV 875 (877)
Q Consensus 846 -----------------------------~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~ 875 (877)
......|+|+|||+|.| ++++|||+||+|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~ 352 (404)
T 2ayn_A 293 NQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR 352 (404)
T ss_dssp -------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE
T ss_pred hhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEEC
Confidence 11347899999999999 7999999999997
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.2e-51 Score=479.62 Aligned_cols=280 Identities=30% Similarity=0.607 Sum_probs=231.8
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCC--------
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGR-------- 384 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-------- 384 (877)
...+|++||.|+||||||||+||||+|+|+|+++|+.. +....... ....++.++|..++..||....
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 212 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVR---SPDKCFSCALDKIVHELYGALNTKQASSSS 212 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSC---CTTTCHHHHHHHHHHHHHSCCCC-------
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCC---CcccchHHHHHHHHHHHhhccccccccccc
Confidence 45789999999999999999999999999999999865 21111222 2245689999999999997432
Q ss_pred -CccChHHHHHHH---hhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccC
Q 002810 385 -AAVAPRAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARN 460 (877)
Q Consensus 385 -~~i~p~~~~~~l---~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~ 460 (877)
..+.|..++..+ ++..+.|.+++||||||||.+|||.||+++.....+. .+.+.......
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~ 276 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQC 276 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSC
T ss_pred ccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccc----------------ccccccccccC
Confidence 256676665555 4889999999999999999999999999987654321 11122233456
Q ss_pred CCccccceeEEEEEEEEcCCCCCeee-eecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHH
Q 002810 461 DSLIVDVFQGQYKSTLVCPVCSKVSI-TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL 539 (877)
Q Consensus 461 ~sii~~lF~G~~~s~~~C~~C~~~s~-~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~ 539 (877)
.++|.++|+|+++++++|..|+++|. ++|+|++|+|+||..
T Consensus 277 ~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~-------------------------------------- 318 (476)
T 3mhs_A 277 ECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK-------------------------------------- 318 (476)
T ss_dssp CSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTC--------------------------------------
T ss_pred CCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhh--------------------------------------
Confidence 78999999999999999999999975 499999999998631
Q ss_pred HhHcCCCCCCcEEEEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceec
Q 002810 540 STACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 619 (877)
Q Consensus 540 ~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (877)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEE
Q 002810 620 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 699 (877)
Q Consensus 620 g~P~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (877)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcCCCccCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCC
Q 002810 700 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 779 (877)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~ 779 (877)
.+|++||+.|+++|.|+
T Consensus 319 ---------------------------------------------------------------~sl~~~L~~~~~~E~l~ 335 (476)
T 3mhs_A 319 ---------------------------------------------------------------KKLYECLDSFHKKEQLK 335 (476)
T ss_dssp ---------------------------------------------------------------CBHHHHHHHHHCCEECS
T ss_pred ---------------------------------------------------------------hHHHHHHHHhcChhhcc
Confidence 17999999999999998
Q ss_pred CCCCccCCCCCccceeEEEEEeecCCCeEEEEEeceeecC-CcccccceeEeccCCCCCcccccccCCC---------CC
Q 002810 780 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKYMKSKDG---------ES 849 (877)
Q Consensus 780 ~~n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~v~~~~~---------~~ 849 (877)
+++ |+|++|+.++.|+|++.|+++|+||+||||||.+.. +...|+++.|+|| +.|||++|+..... ..
T Consensus 336 ~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~ 413 (476)
T 3mhs_A 336 DFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENGKVPD 413 (476)
T ss_dssp SCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CCCBCCC
T ss_pred CCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCC-CeeechhhcCcccccccccccCCCC
Confidence 654 999999999999999999999999999999999864 5678999999999 59999999986432 45
Q ss_pred ceEEEEEEEEeeccCCCCcEEEEEEe
Q 002810 850 YVYDLFAISNHYGGLGGGHYTAYAKV 875 (877)
Q Consensus 850 ~~YdL~AVinH~G~l~gGHYtAy~k~ 875 (877)
..|+|+|||+|.|++++|||+||+|.
T Consensus 414 ~~Y~L~avv~H~G~~~~GHY~a~vr~ 439 (476)
T 3mhs_A 414 IIYELIGIVSHKGTVNEGHYIAFCKI 439 (476)
T ss_dssp EEEEEEEEEEEEECSSSEEEEEEEEC
T ss_pred CcEEEEEEEEeCCCCCCCceEEEEEC
Confidence 78999999999999999999999996
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=5.9e-51 Score=478.37 Aligned_cols=261 Identities=25% Similarity=0.400 Sum_probs=224.9
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (877)
...+|++||.|+||||||||+||||+|+|+||++++...... .....++..+|+.||..|+.+. .++.|..|+
T Consensus 170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~ 242 (522)
T 2f1z_A 170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLT 242 (522)
T ss_dssp TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHH
T ss_pred cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------CcccchHHHHHHHHHHHHhcCC-CccCcHHHH
Confidence 346789999999999999999999999999999997541110 1123468899999999999854 688999998
Q ss_pred HHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEE
Q 002810 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (877)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (877)
..++ .+.|.+++||||||||.+|||.||++++.. ...++|.++|+|+++
T Consensus 243 ~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~ 291 (522)
T 2f1z_A 243 KSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMV 291 (522)
T ss_dssp HHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEE
T ss_pred hhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC-----------------------------ccccchhhheeEEEE
Confidence 8775 378999999999999999999999987431 134679999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEE
Q 002810 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (877)
Q Consensus 474 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 553 (877)
++++|..|++.|.++|+|++|+|+||...
T Consensus 292 s~i~C~~C~~~s~~~e~f~~LsL~i~~~~--------------------------------------------------- 320 (522)
T 2f1z_A 292 SYIQCKEVDYRSDRREDYYDIQLSIKGKK--------------------------------------------------- 320 (522)
T ss_dssp EEECCSSSCCCCCEEEEESCEEECCTTCC---------------------------------------------------
T ss_pred EEEEcCCCCceeeeeeeeEEEEEEeCCcc---------------------------------------------------
Confidence 99999999999999999999999987311
Q ss_pred EEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCC
Q 002810 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (877)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~ 633 (877)
T Consensus 321 -------------------------------------------------------------------------------- 320 (522)
T 2f1z_A 321 -------------------------------------------------------------------------------- 320 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCcc
Q 002810 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (877)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (877)
T Consensus 321 -------------------------------------------------------------------------------- 320 (522)
T 2f1z_A 321 -------------------------------------------------------------------------------- 320 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccc
Q 002810 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (877)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (877)
+|.+||+.|+.+|.|+++|+|+|+.|+ ++
T Consensus 321 --------------------------------------------------~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~ 349 (522)
T 2f1z_A 321 --------------------------------------------------NIFESFVDYVAVEQLDGDNKYDAGEHG-LQ 349 (522)
T ss_dssp --------------------------------------------------BHHHHHHHHTCEEEECTTSCBCCGGGC-SB
T ss_pred --------------------------------------------------cchHHHHHhhceeecCCcceeecCcCC-cc
Confidence 689999999999999999999999995 68
Q ss_pred eeEEEEEeecCCCeEEEEEeceeecC--CcccccceeEeccCCCCCcccccccCC-CCCceEEEEEEEEeeccCCCCcEE
Q 002810 794 QATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYT 870 (877)
Q Consensus 794 ~a~K~~~i~~lP~iLiihLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~v~~~~-~~~~~YdL~AVinH~G~l~gGHYt 870 (877)
.|+|++.|+++|+||+||||||.++. +...|+++.|+|| +.|||++|+.... ..+..|+|+|||+|.|++++|||+
T Consensus 350 ~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~ 428 (522)
T 2f1z_A 350 EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYV 428 (522)
T ss_dssp CEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEE
T ss_pred ceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCC-CeecchhhhccccCCCCcEEEEEEEEEecccCCCceEE
Confidence 99999999999999999999999975 4578999999999 5999999998643 246789999999999999999999
Q ss_pred EEEEe
Q 002810 871 AYAKV 875 (877)
Q Consensus 871 Ay~k~ 875 (877)
||+|+
T Consensus 429 a~v~~ 433 (522)
T 2f1z_A 429 VYLNP 433 (522)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 99985
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=1.2e-50 Score=463.06 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=131.1
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCC----chhHHHHHHHHHHHHHhcCCCCccCh
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLG----MHGELALAFGDLLRKLWSSGRAAVAP 389 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~----~~~~l~~~l~~L~~~l~~~~~~~i~p 389 (877)
....+++||.|+||||||||+||||+|+|+||++|+.... ..+..++.+ ...+++++|+.||..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNP-SQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCG-GGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccc-ccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 4567899999999999999999999999999999987521 122222111 25689999999999999988899999
Q ss_pred HHHHHHHhhhcCCCC-------CCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCC
Q 002810 390 RAFKGKLARFAPQFS-------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 462 (877)
Q Consensus 390 ~~~~~~l~~~~~~F~-------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s 462 (877)
..|+.+++...|.|. +++||||||||.+|||.||+++.. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------------------------c
Confidence 999999999999998 899999999999999999999732 5
Q ss_pred ccccceeEEEEEEEEcCCCCCee--eeecCCeeEeecCCC
Q 002810 463 LIVDVFQGQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPS 500 (877)
Q Consensus 463 ii~~lF~G~~~s~~~C~~C~~~s--~~~e~f~~LsL~ip~ 500 (877)
+|.++|+ +++++++|..|++.+ .++|+|++|+|+||.
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~ 183 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISG 183 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCT
T ss_pred hHHHHHH-hheEEEEECCCCCCccccccccceeeeecccc
Confidence 6899999 999999999999987 589999999999873
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.9e-50 Score=489.80 Aligned_cols=156 Identities=26% Similarity=0.426 Sum_probs=136.0
Q ss_pred cCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCC---------
Q 002810 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------- 383 (877)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------- 383 (877)
+...+|++||.|+||||||||+||||+|+|+||++|+.... .....++.....++.++|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLE-KIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHH-HHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhh-hhhccccCCccccHHHHHHHHHHHHhcccccccccccc
Confidence 45688999999999999999999999999999999985421 12223445567789999999999999743
Q ss_pred -----------CCccChHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHH
Q 002810 384 -----------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANEC 452 (877)
Q Consensus 384 -----------~~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~ 452 (877)
...++|..|+.++++..+.|.+++||||||||.+|||.||++++.
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------------------ 472 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------------------ 472 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------------------
T ss_pred ccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc------------------------
Confidence 448999999999999999999999999999999999999998721
Q ss_pred HhhccccCCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCC
Q 002810 453 WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 501 (877)
Q Consensus 453 w~~~~~~~~sii~~lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~ 501 (877)
.++|.++|+|+++++++|..|++++.++++|++|+|+||..
T Consensus 473 --------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 473 --------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp --------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred --------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCcc
Confidence 35689999999999999999999999999999999999964
No 11
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=100.00 E-value=5.8e-38 Score=325.97 Aligned_cols=215 Identities=29% Similarity=0.550 Sum_probs=177.8
Q ss_pred hhcCC-CCCCCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002810 11 MENGG-SCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERP 89 (877)
Q Consensus 11 ~~~~~-~~~~~~~~~e~~~i~~l~~~~~~~~~~g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p 89 (877)
|++|+ ....++.++|+++|..+++ +++++|++|||||++||++|++||+++..+. .. .......|
T Consensus 3 ~~~~~~~~~~p~l~~Qr~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~--~~---------~~~~~~~p 68 (231)
T 3jyu_A 3 MAEGRGSRERPDVETQKTELGALMG---TTLQRGAQWYLIDSRWFKQWKKYVGFDSWDM--YN---------VGEHNLFP 68 (231)
T ss_dssp ------CCCCCCHHHHHHHHHTTTT---CCCCTTCEEEEEEHHHHHHHHHHHTSSSCCT--TT---------TTCGGGCC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhccccccc--cc---------ccccCCCC
Confidence 45554 4556899999999999876 5799999999999999999999998865421 00 11123689
Q ss_pred CCCcChhhccCCCCCCCCCcchhcccccCCCcEEEeCHHHHHHHHHHhC---CCCCCceeEeecCccc-ceeeeeccceE
Q 002810 90 GPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMISEGIVN-EKRVEVFXLCL 165 (877)
Q Consensus 90 gpIdNs~Ll~~~~~~~~~~~~~Lk~~l~e~~Dy~~Vp~~~W~~l~~wYG---~~~~I~R~vi~~~~~~-~~~vEvyP~~l 165 (877)
|||||++|++.. .+..||++|.++.||++||+++|++|.+||| |||+|.|+||..+... ...||+||+.|
T Consensus 69 GPIDNs~L~~~~------~~~~Lk~~l~e~~Dy~~vp~~vW~~l~~wYG~~~gg~~I~R~vi~~~~~~~~~~vEvyP~~l 142 (231)
T 3jyu_A 69 GPIDNSGLFSDP------ESQTLKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLEL 142 (231)
T ss_dssp CSBCCGGGEEET------TTTEECSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEECSSSCEEEECCSCEEE
T ss_pred CcEehHHHhCcC------CCcccccccccCCCEEEECHHHHHHHHHHhCCCCCCCceEEEEeccCCCCCcceEEEecceE
Confidence 999999999742 2468999999999999999999999999999 8899999999987433 33899999999
Q ss_pred EEEecCCCC-ceEEEeChhchHHHHHHHHHHHhCCCCc-ceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 166 KLIDSRDNS-QTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 166 ~i~~~~~~~-~~~~~~S~~~tv~~l~~~~~~~~~l~~~-~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
+++.+.+.. ..++.+|+.+|+.+|++++|+.|+|+.+ ++|||++...++. +++.+.++||+++.+.++|.||+|+++
T Consensus 143 ~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 143 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 998876543 2457889999999999999999999987 7999999887777 778888899999999999999999996
Q ss_pred cCc
Q 002810 244 DNG 246 (877)
Q Consensus 244 ~~~ 246 (877)
.+.
T Consensus 222 ~dg 224 (231)
T 3jyu_A 222 EDG 224 (231)
T ss_dssp TTS
T ss_pred CCC
Confidence 543
No 12
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=100.00 E-value=1.5e-37 Score=320.06 Aligned_cols=204 Identities=28% Similarity=0.601 Sum_probs=174.6
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhc
Q 002810 19 PCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDII 98 (877)
Q Consensus 19 ~~~~~~e~~~i~~l~~~~~~~~~~g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~Ll 98 (877)
.++.++|+++|+.+++ +++++|++|||||++||++|++||+++..... . .......||||||++|+
T Consensus 3 ~p~l~~Q~~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~--~---------~~~~~~~pGpIdNs~L~ 68 (217)
T 4a3p_A 3 AADLDTQRSDIATLLK---TSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKY--Q---------MGDQNVYPGPIDNSGLL 68 (217)
T ss_dssp CCCHHHHHHHHHHHTT---CCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCT--T---------TTCGGGCCCSBCCGGGB
T ss_pred CCCHHHHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccc--c---------ccccCCCCCcEehHHhh
Confidence 4588999999999986 48999999999999999999999988754210 0 11123689999999999
Q ss_pred cCCCCCCCCCcchhcccccCCCcEEEeCHHHHHHHHHHhC---CCCCCceeEeecCcccceeeeeccceEEEEecCCC-C
Q 002810 99 QNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN-S 174 (877)
Q Consensus 99 ~~~~~~~~~~~~~Lk~~l~e~~Dy~~Vp~~~W~~l~~wYG---~~~~I~R~vi~~~~~~~~~vEvyP~~l~i~~~~~~-~ 174 (877)
... ....||++|.++.||++||+++|++|.+||| |||+|.|+||..+.. ..||+||+.|+++.+.+. .
T Consensus 69 ~~~------~~~~Lk~~l~e~~Dy~~vp~~vW~~l~~wYG~~~ggp~I~R~vi~~~~~--~~vEvyP~~l~l~~~~~~~~ 140 (217)
T 4a3p_A 69 KDG------DAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMF--CKVEVYLTELKLCENGNMNN 140 (217)
T ss_dssp CCC---------CBCSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEETTE--EEECCSCEEEEEEETTEEEE
T ss_pred CCC------CCcccCcCcccCCCEEEECHHHHHHHHHHhCCCCCCCCcceeEEecCCe--eEEEEeccEEEEEecCCCCc
Confidence 642 3578999999999999999999999999999 899999999998852 689999999999887654 3
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCc-ceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~-~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
..++.+|+.+|+.+|++++|+.|+++.+ ++|||+++..+.. +++++.++||+++.+.++|.||+|+++.+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~-~~L~~~~~tl~~~~l~~~Q~illE~r~~d 211 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTF-EPLNKPDSTIQDAGLYQGQVLVIEQKNED 211 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEE-EECCCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-eecCCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 4578899999999999999999999986 7999999877666 78888889999999999999999999654
No 13
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.92 E-value=8e-25 Score=208.57 Aligned_cols=117 Identities=32% Similarity=0.770 Sum_probs=96.5
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002810 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERP 89 (877)
Q Consensus 10 ~~~~~~~~~~~~~~~e~~~i~~l~~~~~~~~~~g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p 89 (877)
+|.+|+ .++.++|+++|+.+++ .++++|++|||||++||++|++||+++..+. ... .....+|
T Consensus 21 ~~~~~~---~p~~e~Qr~~I~~l~~---~~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~--~~~---------~~~~~~p 83 (141)
T 1w6v_A 21 MMAEGG---AADLDTQRSDIATLLK---TSLRKGDTWYLVDSRWFKQWKKYVGFDSWDK--YQM---------GDQNVYP 83 (141)
T ss_dssp -CCCSS---SCCHHHHHHHHHHHHS---SCCCTTCEEEEEEHHHHHHHHHHHTCSTTCC--SST---------TCSTTCC
T ss_pred hhccCC---CCCHHHHHHHHHHHHH---cCCCCCCEEEEECHHHHHHHHHHhcCCcccc--ccc---------cccCCCC
Confidence 455655 3588999999999986 4789999999999999999999998865421 001 1123689
Q ss_pred CCCcChhhccCCCCCCCCCcchhcccccCCCcEEEeCHHHHHHHHHHhC---CCCCCceeEee
Q 002810 90 GPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMIS 149 (877)
Q Consensus 90 gpIdNs~Ll~~~~~~~~~~~~~Lk~~l~e~~Dy~~Vp~~~W~~l~~wYG---~~~~I~R~vi~ 149 (877)
|||||++|++.. +...||++|.++.||++||+++|++|.+||| |||+|.|+||.
T Consensus 84 GpIDNs~Ll~~~------~~~~Lk~~L~e~~Dy~lVp~~vW~~L~~wYG~~~ggp~I~R~vi~ 140 (141)
T 1w6v_A 84 GPIDNSGLLKDG------DAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVE 140 (141)
T ss_dssp CSBCCTTTBCSS------CTTCBCSSCCTTTTEEEECHHHHHHHHHHSCBCTTCCCCEEECCC
T ss_pred CCCcCHHHhCcC------ccccccccccCCCCEEEECHHHHHHHHHHHCCCCCCCceeEeeec
Confidence 999999999753 2468999999999999999999999999999 89999999985
No 14
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.90 E-value=1.8e-24 Score=232.67 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=80.4
Q ss_pred CccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHH-HHHHHHHhcCCCCccChHHHHHHH
Q 002810 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAF-GDLLRKLWSSGRAAVAPRAFKGKL 396 (877)
Q Consensus 318 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~L~~~l~~~~~~~i~p~~~~~~l 396 (877)
-++||.|+||||||||.||||+++|++++.++.. ....+. ......+..+| ..+++.|-. ..+.|..|+..|
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~-~~~~~~---~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~L 80 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLR-PKEKND---VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKL 80 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHC-CCCTTS---CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhC-CCCCCc---chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHH
Confidence 4799999999999999999999999999999864 221111 12234688888 899999975 889999999999
Q ss_pred hhhcCCCC-----CCCcccHHHHHHHHHHHHH
Q 002810 397 ARFAPQFS-----GYNQHDSQELLAFLLDGLH 423 (877)
Q Consensus 397 ~~~~~~F~-----~~~QqDA~Efl~~LLd~L~ 423 (877)
++..|+|. +++||||.||+..||..|.
T Consensus 81 R~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~ 112 (374)
T 2vhf_A 81 RKILEKVEAASGFTSEEKDPEEFLNILFHHIL 112 (374)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHTTTT
T ss_pred HHHhHHHhcccCCCccccCHHHHHHHHHHHHh
Confidence 99999886 3899999999999999875
No 15
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.87 E-value=1.3e-07 Score=109.58 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=127.2
Q ss_pred CCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCC---CceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHH
Q 002810 460 NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST---VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLI 536 (877)
Q Consensus 460 ~~sii~~lF~G~~~s~~~C~~C~~~s~~~e~f~~LsL~ip~~---~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 536 (877)
.++.+.++|. ...|+ +.++|++..|+||.. ..+.+.|+++. ....+..+.+.++|+++++||.
T Consensus 303 ~~~~L~d~l~--------~~~~~----~~~~l~YevL~ipl~ElE~~r~~kv~w~~--~~~~~~~~~l~vpK~gtV~Dll 368 (530)
T 2ylm_A 303 YEGTLRDLLQ--------FFKPR----QPKKLYYQQLKMKITDFENRRSFKCIWLN--SQFREEEITLYPDKHGCVRDLL 368 (530)
T ss_dssp CCSCHHHHST--------TSCSS----SCCEEEEEECSSCHHHHHSBCCEEEEEEC--TTSCEEEEEECCBTTCBHHHHH
T ss_pred CCCcHHHHhh--------cccCC----CCCeEEEEECCCCHHHHhhCceEEEEEEC--CCCceEEEEEEcCCCCCHHHHH
Confidence 4566777772 24454 468999999999987 77888888773 3344568999999999999999
Q ss_pred HHHHhHcCCCC--CCcEEEEEEeCCceeEeccCCcccccccCC--CCeEEEEEecCC-----CCCceEEEEEeecccccc
Q 002810 537 LALSTACCLKI--DEGLLLAEVYNHQIFRFFENPAELISSIKD--DEHIVAYRFDRK-----QGGKIKLEIVNRWQEKSA 607 (877)
Q Consensus 537 ~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~d~~~~~~~i~~--~d~i~~ye~~~~-----~~~~~~~~~~~~~~~~~~ 607 (877)
+++.+..++.. ...+.+.++++++|++++.+ +..+..|.+ ...+.++++|.. .++...++++|...+.
T Consensus 369 ~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~-~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~-- 445 (530)
T 2ylm_A 369 EECKKAVELGEKASGKLRLLEIVSYKIIGVHQE-DELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEV-- 445 (530)
T ss_dssp HHHHTTCCCCTTCCCCEEEEEEETTEEEEEECT-TSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSST--
T ss_pred HHHHHhcCCCcCCcccEEEEEEECCEEEEecCC-CcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCc--
Confidence 99999998853 66799999999999999984 557888887 888999999976 4445678888875432
Q ss_pred cccccCCCceeccccEEEEecCCCCCHHHHHHHHHHHcc
Q 002810 608 SDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS 646 (877)
Q Consensus 608 ~~~~~~~~~~~~g~P~v~~i~~~~~~~~~~~~~~~~~~~ 646 (877)
...||.||++.+..+. +..+++..+.+++.
T Consensus 446 --------~~~~G~PF~~~v~~gE-t~~~~k~Rl~~rlg 475 (530)
T 2ylm_A 446 --------FGTFGIPFLLRIHQGE-HFREVMKRIQSLLD 475 (530)
T ss_dssp --------TCEEEEEEEEEEETTC-CHHHHHHHHHHHHC
T ss_pred --------ccccCCCeEEEecCCC-cHHHHHHHHHHHhC
Confidence 2469999999998544 88999988887763
No 16
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.94 E-value=0.58 Score=40.69 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=54.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCc-cccCCCCccCChhhhhccCCceEEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQR-STSPLDVSDQTLDDAMLQMDQDILLEV 241 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~-~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (877)
....+.+....|+.+|+.++...+++++...||.-+..... ....+.+..++|..+++.++..|.|+.
T Consensus 23 ~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 23 QILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp CCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEe
Confidence 34567889999999999999999999999999985533221 113356778999999999999998863
No 17
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.81 E-value=1.1 Score=39.11 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=49.8
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCC-ccccCCCCccCChhhhhccCCceEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQ-RSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~-~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
...+.+....|+.+|++++....+++++.-||.-+ +.. +....|.+.+++|.++++.++..|.+
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~-g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY-DDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE-CSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe-cCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 46789999999999999999999999999998743 321 11122345578999999999988755
No 18
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=91.28 E-value=0.34 Score=41.24 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=50.8
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceE-EEE
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI-LLE 240 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i-lve 240 (877)
..++++...|+.+|++++....|++++.-||+-+.........+.+.+++|.++++.++..| |++
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 46789999999999999999999999999998553332221233455799999999999887 444
No 19
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=90.91 E-value=0.98 Score=37.31 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=49.0
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.....+.++..+|+.+|++++++..++++++.||. |.+ ..++ .++||.++++.++..|-+-++
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G-----~~L~-d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEG-----QRIA-DNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETT-----EECC-TTCCHHHHTCCTTEEEEEEEC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECC-----EEeC-CCCCHHHcCCCCCCEEEEEEe
Confidence 34457888999999999999999999999998875 432 2233 368999999999877665444
No 20
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=90.90 E-value=0.98 Score=39.00 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=50.4
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
...+.++..+|+.+|++++....+++++..||. |.+ ..|++.+++|.++++.++..|.+-++..
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YSG-----IELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ETT-----EEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-ECC-----EECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 567889999999999999999999999998886 432 2344433899999999988877765543
No 21
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=90.73 E-value=0.93 Score=39.31 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=49.6
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
...+.+....||.+|++++....+++++.-||.-...+... ..+.+.+++|.++++.++..|.+.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~-~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCV-STMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEE-EECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCccc-ceeCCCCCCHhHCCcCCCCEEEEE
Confidence 45778999999999999999999999999999844311111 123345789999999998877653
No 22
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=90.71 E-value=0.99 Score=38.84 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=53.4
Q ss_pred eeeccceEEEEecC-CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCce
Q 002810 158 VEVFXLCLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236 (877)
Q Consensus 158 vEvyP~~l~i~~~~-~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ 236 (877)
|.-.|..+.|+... ......+.+...+|+.+|++++....++++++.||+ +.+ ..++ ...||.++++.++..
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLi-f~G-----k~Lk-D~~TL~dY~I~dgst 87 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQ-KGG-----SVLK-DHISLEDYEVHDQTN 87 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEE-eCC-----EEcc-CcCCHHHcCCCCCCE
Confidence 44456667776653 444567889999999999999999999999999997 322 2233 368999999998876
Q ss_pred EE
Q 002810 237 IL 238 (877)
Q Consensus 237 il 238 (877)
+-
T Consensus 88 Lh 89 (93)
T 3plu_A 88 LE 89 (93)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 23
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=90.42 E-value=0.77 Score=40.56 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=51.0
Q ss_pred eecc---ceEEEEecCC---CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhc-
Q 002810 159 EVFX---LCLKLIDSRD---NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML- 231 (877)
Q Consensus 159 EvyP---~~l~i~~~~~---~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l- 231 (877)
+.|| +.++++.-.. .....+.+...+|+.+|++++...++++++.-| |.+-+ .++ +.++||.++++
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~gg-----kll-~D~~TL~~ygI~ 88 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQ-----RLA-RDQETLHSHGVR 88 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETT-----EEE-CTTCBTGGGTCC
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccC-----eEc-cCcCcHHHcCCC
Confidence 3555 3455444322 245678899999999999999999999999889 76632 233 34789999999
Q ss_pred cCCceEEE
Q 002810 232 QMDQDILL 239 (877)
Q Consensus 232 ~~~q~ilv 239 (877)
.++..+.+
T Consensus 89 ~~G~t~hL 96 (105)
T 4dbg_A 89 QNGDSAYL 96 (105)
T ss_dssp STTCEEEE
T ss_pred CCCCEEEE
Confidence 47766543
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=89.94 E-value=1.3 Score=35.94 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=49.8
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
....+.++...|+.+|++++.+..+++++..||. |.+ ..+.+ +++|.++++.++..+.+-++.
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L~d-~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLED-GRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECCT-TCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECC-----eECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 3456788999999999999999999999998887 322 23333 689999999999888776553
No 25
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.90 E-value=1.1 Score=37.76 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=50.3
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
...+.++...|+.+|++++.+..+++++..||. |.+ ..++ .+++|.++++.++..|.+-++..|
T Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~G-----k~L~-d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 19 SYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-FQG-----QVLQ-DWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-ETT-----EECC-SSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-ECC-----EEcc-CCCCHHHCCCCCCCEEEEEEeccC
Confidence 456788999999999999999999999998886 432 2233 368999999999888777665433
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=89.70 E-value=0.8 Score=38.31 Aligned_cols=65 Identities=14% Similarity=0.315 Sum_probs=50.7
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
....+.++..+|+.+|++++++..+++++..||+ |.+ ..++ .+++|.++++.++..+.+-++..|
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~-~~g-----~~L~-d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETB-----EECC-TTCBTTTTTCCTTCEEEEEECCC-
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC-----eECC-CCCCHHHCCCCCCCEEEEEEeccC
Confidence 3457788999999999999999999999999887 422 2333 367999999999988877666443
No 27
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=89.69 E-value=2 Score=35.39 Aligned_cols=64 Identities=13% Similarity=0.256 Sum_probs=50.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
......+.++..+|+.+|++++....+++++..||. |.+ ..+++ +++|.++++.++..+.+-++
T Consensus 13 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~G-----~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEG-----KPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE-ECC-----EECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 334457889999999999999999999999988876 432 23333 68999999999888766544
No 28
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=89.56 E-value=1.4 Score=38.12 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=52.5
Q ss_pred EEEEec-CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 165 LKLIDS-RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 165 l~i~~~-~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
++|.+. .......+.++..+|+.+|+++++...+++++..||. |.+ ..|. .++||.++++.++..|-+-++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi-f~G-----k~L~-d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEG-----QRIA-DNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETT-----EECC-TTCCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE-ECC-----eEcC-CCCCHHHCCCCCCCEEEEEEe
Confidence 444443 2334567889999999999999999999999998876 432 2233 468999999999887766544
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=89.27 E-value=1.4 Score=37.98 Aligned_cols=67 Identities=15% Similarity=0.294 Sum_probs=52.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecCc
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 246 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~~ 246 (877)
.....+.++..+|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++.++..|.+-++..|.
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~G-----~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 34457889999999999999999999999998887 432 2233 4679999999999888877665443
No 30
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=89.21 E-value=1.8 Score=36.06 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=46.1
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (877)
...+.+.+..++..|++..|+..+++++.+|++ |.+. . + ..++|+.++++.++..|
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~-l-~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF-FDGT----K-L-SGKELPADLGLESGDLI 75 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE-ETTE----E-C-CSCCCHHHHTCCTTCEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----E-c-CCCCCHHHcCCCCCCEE
Confidence 467899999999999999999999999999987 4332 2 2 24789999999988655
No 31
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=89.11 E-value=1.6 Score=35.34 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=49.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
....+.++..+|+.+|++++.+..+++++..||. |.+ ..++ .+++|.++++.++..+.+-++.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L~-d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSG-----KQMN-DEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 3456788999999999999999999999988876 422 2233 3689999999999888776553
No 32
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.05 E-value=1.8 Score=38.15 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=49.4
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
..+.+....|+.+|++++....+++.+..||. |.+ ..|+ .+++|.++++.++..|.+-.+..
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAG-----KILK-DPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ETT-----EECC-TTSCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECC-----EECC-CcCcHHHcCCCCCCEEEEEEcCC
Confidence 57888999999999999999999999998885 322 2333 36899999999988877765533
No 33
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=89.03 E-value=1.3 Score=36.99 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=50.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
.....+.++..+|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++.++..+.+-++..
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~~g-----~~L~-d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEECCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-ECC-----EECC-CCCCHHHcCCCCCCEEEEEEECc
Confidence 34457889999999999999999999999998887 432 2333 36899999999988887765543
No 34
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=88.90 E-value=1.9 Score=37.59 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=48.7
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
...+.++...|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+-.+
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAG-----KILK-DPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECC-TTSBHHHHTCCTTCEEEEEEC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECC-----EECC-CcCcHHHCCCCCCCEEEEEEc
Confidence 357788999999999999999999999988886 322 2333 368999999999888777554
No 35
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=88.70 E-value=2.1 Score=36.21 Aligned_cols=64 Identities=13% Similarity=0.277 Sum_probs=49.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
....+.++..+|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+-.+..
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G-----k~L~-D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEG-----KPLE-DQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSS-----SCCC-TTSBHHHHHCSTTCEEEEEEC--
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEEcC
Confidence 3456788899999999999999999999998886 422 2333 46899999999998887765533
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=88.65 E-value=1.1 Score=38.04 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=49.4
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
.....+.++..+|+.+|++++.+..+++++..||. |.+ ..++ .+++|.++++.++..|.+-++..
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G-----k~L~-D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTSBSGGGTCCTTCEEEEEC---
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEeCC
Confidence 34456788999999999999999999999998886 422 2333 36899999999988877765543
No 37
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=88.64 E-value=1.3 Score=37.80 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=48.4
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
+....+.++..+|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++.++..|.+-
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G-----k~L~-D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTCBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE-ECC-----eECC-CcCcHHHCCCCCCCEEEEE
Confidence 34457889999999999999999999999988887 432 2233 3689999999998877664
No 38
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=88.41 E-value=1.2 Score=38.37 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=49.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.....+.++...|+.+|++++.+..+++++..||. |.+ ..++ .+++|.++++.++..|.+-++
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL-LAG-----APLE-DEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE-ETT-----EECC-TTSBHHHHTCCSSCEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 34456788999999999999999999999988886 432 2233 468999999999887766544
No 39
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=88.38 E-value=1.7 Score=35.50 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=48.3
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
......+.++...|+.+|++++....+++++..||. |.+ ..+. .+++|.++++.++..+.+-
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~g-----k~L~-d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSG-----KILK-DDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-ECC-----eEcC-CCCCHHHcCCCCCCEEEEE
Confidence 333457788999999999999999999999998886 432 2333 3589999999988877654
No 40
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=87.87 E-value=1.3 Score=37.66 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=51.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
.....+.++..+|+.+|++++....+++++..||. |.+ ..+++ +++|.++++.++..+.+-++..|
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~D-~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSG-----KQMND-EKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECCT-TSBTTTTTCCTTCEEEEECBCC-
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE-ECC-----eECCC-CCcHHHcCCCCCCEEEEEEECCC
Confidence 34457788999999999999999999999988876 422 23343 78999999999988877666544
No 41
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.42 E-value=2 Score=39.22 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=50.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
.....+.++...||.+|++++....+++.+..||. |.+ ..|+ .+++|.++++.++..|.+-.+..
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI-FAG-----KILK-DQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE-ETT-----EEES-TTSCGGGTTCSSSEEEEEEEC--
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE-ECC-----EEcC-CCCCHHHcCCCCCCEEEEEeccC
Confidence 44467889999999999999999999999998886 422 2333 46899999999988877765533
No 42
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=87.32 E-value=1.5 Score=38.04 Aligned_cols=64 Identities=16% Similarity=0.319 Sum_probs=49.9
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
......+.+...+|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+-++
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTCBSGGGTCCTTEEEEEECB
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 334467889999999999999999999999988877 432 2233 468999999998887766544
No 43
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=87.07 E-value=1.3 Score=37.19 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=49.6
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
......+.++..+|+.+|++++....+++++..||. |.+ ..+++ +++|.++++.++..+.+-++
T Consensus 21 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~G-----~~L~d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSG-----KQMND-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETT-----EECCT-TSBGGGGTCCTTCEEEECCC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE-ECC-----eECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 334467889999999999999999999999888876 422 23343 78999999998887766443
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.96 E-value=3.8 Score=34.51 Aligned_cols=63 Identities=30% Similarity=0.380 Sum_probs=49.4
Q ss_pred ceEE-EeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 175 QTVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 175 ~~~~-~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
...+ .++...|+.+|++++....+++++..||. |.+ ..++ .+++|.++++..+..|.+-++..
T Consensus 20 ~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~g-----k~L~-d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 20 TCTIEDVSRKATIEELRERVWALFDVRPECQRLF-YRG-----KQLE-NGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE-ETT-----EECC-SSSBHHHHTCCTTCEEEEEECCC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE-ECC-----eECC-CCCCHHHCCCCCCCEEEEEEeCC
Confidence 4567 48999999999999999999999998886 322 2333 46899999999988877765543
No 45
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=86.90 E-value=2.5 Score=37.62 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=50.8
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
......+.++...|+.+|+++++...+++++..||. |.+ ..+. .+++|.++++..+..|.+-++.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTTTTTCCTTCEEEEEECC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEec
Confidence 334567889999999999999999999999998887 432 2333 3679999999998887765543
No 46
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=86.58 E-value=1.8 Score=38.31 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=51.0
Q ss_pred EEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 165 l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
+.|.+........+.+.+..++..|++..|+..+++.+.+|++ |.+. .+ ..++|+.++++.++..|-+
T Consensus 32 I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~-FdG~----rl--~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 32 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGI----RI--QADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp EEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTE----EC--CTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE-ECCe----Ec--CCCCCHHHcCCCCCCEEEE
Confidence 3333333444567899999999999999999999999999988 4332 22 2468999999998876543
No 47
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.51 E-value=1.7 Score=38.08 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
...+.+...+|+.+|++++....++++++.||. |.+ ..|.+..++|.++++.++..|.+..+
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~g-----k~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV-YME-----QLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE-ETT-----EEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE-ECC-----EECCCCcccHHHCCCCCCCEEEEEEC
Confidence 446788999999999999999999999988886 332 23454457999999998877776544
No 48
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.48 E-value=2.1 Score=36.50 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=47.7
Q ss_pred CCceEEEeChh-----chHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKK-----ASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~-----~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
.....+.++.. .|+.+|++++....+++++.-||. |.+ ..|.+.+++|.++++..+..|.+.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~G-----k~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FKG-----KSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ETT-----EEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-ECC-----eecCCCcccHHHCCCCCCCEEEEE
Confidence 34456777774 999999999999999999988886 432 234555678999999988777664
No 49
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=86.42 E-value=2.6 Score=36.81 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=49.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.....+.++...|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+-.+
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FAG-----KILK-DQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-ETT-----EEEC-TTCCTGGGTCCTTCEEEEEEC
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-ECC-----EECC-CcCcHHHcCCCCCCEEEEEEc
Confidence 34457788999999999999999999999998885 422 2333 468999999998887766543
No 50
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=86.38 E-value=2.6 Score=35.70 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (877)
.....+.++..+|+.+|++++....+++++..||. |.+ ..|++ +++|.++++ .+..|.+-.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~G-----k~L~d-~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQG-----RVLQD-DKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECCT-TSBGGGGTC-TTEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECC-----eECCC-CCCHHHcCC-CCcEEEEEe
Confidence 34457888999999999999999999999988886 422 23343 689999999 676665543
No 51
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=86.33 E-value=2.7 Score=36.33 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=51.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
....+.++...|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++.++..|.+..+..|
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~G-----k~L~-D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECC-----EECC-CCCCHHHcCCCCCCEEEEEEeCCC
Confidence 3456788999999999999999999999988876 422 2333 368999999999988877766443
No 52
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.08 E-value=2.4 Score=36.99 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=47.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
....+.+...+|+.+|++++.+.++++++..||- |.+ ..|+ .++||.++++..+..|++
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~G-----KiL~-D~~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIV-INK-----KQLQ-LGKTLEEQGVAHNVKAMV 88 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETT-----EECC-TTSBHHHHTCCSSEEEEE
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eCC-----eECC-CCCcHHHcCCCCCCEEEE
Confidence 3567889999999999999999999999988875 432 2333 468999999999987754
No 53
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=86.01 E-value=3 Score=35.76 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=48.4
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.+.+..++..|++..|+..+++++.+|+. |.+. .+ ..++|+.++++.++..|=+
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~-FdG~----~l--~~~~Tp~dl~medgD~Idv 74 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI--NETDTPAQLEMEDEDTIDV 74 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE-ETTE----EC--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEEEE
Confidence 344568889999999999999999999999999987 4432 22 2468999999999876543
No 54
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=85.99 E-value=1.8 Score=36.47 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=46.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
....+.++..+|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G-----k~L~-D~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FKG-----KVLV-ETSTLKQSDVGSGAKLML 80 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ETT-----EECC-TTCBTTTTTCCTTEEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECC-----eECC-CcCCHHHCCCCCCCEEEE
Confidence 3446788899999999999999999999988886 422 2333 368999999988877655
No 55
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.66 E-value=4 Score=36.55 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=60.7
Q ss_pred ccceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 161 FXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 161 yP~~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
....+++.+.+......+.++...|+.+|++.+...++++.+..||- |.+ ..|. .+.||.++++.++..+=++
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI-y~G-----KiLK-D~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR-YSG-----KILK-NNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE-ETT-----EEEC-SSCCHHHHSCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE-ECC-----eEcC-CcchHHHcCCCCCCEEEEE
Confidence 44667766666666778899999999999999999999999988865 433 2333 3789999999999888787
Q ss_pred EEec
Q 002810 241 VQVD 244 (877)
Q Consensus 241 ~~~~ 244 (877)
....
T Consensus 87 i~s~ 90 (118)
T 2daf_A 87 IFST 90 (118)
T ss_dssp EEES
T ss_pred EecC
Confidence 6643
No 56
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=84.98 E-value=2.6 Score=36.32 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=48.4
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.+.+..++..|++..|+..+++++.+|+. |.+. .+ ..++|+.++++.++..|=+
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-FdG~----~l--~~~~Tp~dl~medgD~Idv 76 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI--NETDTPAQLEMEDEDTIDV 76 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTE----EC--CTTCCTTTTTCCTTCEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEEEE
Confidence 334567889999999999999999999999999987 4432 22 2468999999999876644
No 57
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=84.87 E-value=2.6 Score=34.24 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=46.9
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (877)
......+.+.+..++..|++..|+..+++++.+|++ |.+. .+ ..++|+.++++.++..|
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~l--~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI--NETDTPAQLEMEDEDTI 68 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE-ETTE----EC--CTTCCTTTTTCCTTEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEE
Confidence 344567889999999999999999999999999987 4432 22 24689999999987554
No 58
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=84.72 E-value=3 Score=37.84 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=49.2
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
...+.+....|+.+|+.++....+++++.-||.-.......-..|.+.+++|.++++.++..|.|-
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 467888999999999999999999999999987442111110123345789999999998877654
No 59
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.53 E-value=2.1 Score=36.85 Aligned_cols=65 Identities=17% Similarity=0.088 Sum_probs=48.1
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
...+.+....|+.+|++++....++++++-||+-.......-..+.+.+++|.++++.++..|.|
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 46788999999999999999999999999998844211110011333478999999998877655
No 60
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=84.40 E-value=3.8 Score=36.35 Aligned_cols=64 Identities=16% Similarity=0.328 Sum_probs=50.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
.....+.++...|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++.++..|.+-++.
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE-ETT-----EECC-SSCBTTTTTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 33457788999999999999999999999998886 322 2333 3689999999998888776553
No 61
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=84.14 E-value=3.9 Score=35.14 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.+.+..++..|++..|+..+++++.+|++ |.+. .+ ..+.|+.++.+.++..|-+
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~l--~~~~Tp~dl~medgD~Idv 86 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI--NETDTPAQLEMEDEDTIDV 86 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE-ETTE----EC--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE-ECCE----Ec--CCCCCHHHcCCCCCCEEEE
Confidence 334567889999999999999999999999999987 4432 22 2468999999998876543
No 62
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=83.99 E-value=4.8 Score=32.83 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=46.2
Q ss_pred EEE-eChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEE
Q 002810 177 VIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (877)
Q Consensus 177 ~~~-~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (877)
.+. ++..+|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..+.+-+
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~g-----~~L~-d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YRG-----KQME-DGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTCBTTTTTCCTTCEEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEE-ECC-----EECC-CCCCHHHcCCCCCCEEEEEE
Confidence 677 9999999999999999999999998886 422 2233 36899999999888776543
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=83.98 E-value=3.1 Score=37.20 Aligned_cols=66 Identities=15% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
.....+.++..+|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+..+..|
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WAG-----KQLE-DGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTCBTTTTTCCSSCEEEEEECCCS
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEEcCC
Confidence 34457788999999999999999999999998886 332 2333 468999999999988877766544
No 64
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=83.92 E-value=3.9 Score=34.36 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=45.9
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.++..+|+.+|++++....+++++.-||. |.+ ..+.+ +++|.++++ ++..+-+
T Consensus 26 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~G-----k~L~D-~~tL~~~~i-~g~~i~l 85 (88)
T 4eew_A 26 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQG-----RVLQD-DKKLQEYNV-GGKVIHL 85 (88)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECCT-TSBGGGGTC-TTEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECC-----EECCC-CCcHHHcCC-CCcEEEE
Confidence 344457889999999999999999999999988876 422 23443 789999999 6665543
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.49 E-value=1 Score=39.55 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=47.2
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.+....+.++..+|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSG-----KILK-DDQTVESYHIQDGHSVHL 96 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ETT-----EECC-TTSBTTTTTCCTTEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-ECC-----EECC-CcCcHHHCCCCCCCEEEE
Confidence 344456788999999999999999999999888876 422 2333 368999999998876655
No 66
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.13 E-value=2.1 Score=36.88 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
.....+.+....|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..|.+-
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G-----k~L~-D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTG-----KILR-DQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETT-----EECC-TTSCHHHHTCCTTEEEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECC-----EECC-CcCCHHHCCCCCCCEEEEE
Confidence 44557888999999999999999999999888875 322 2333 4689999999988766554
No 67
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=83.10 E-value=4.5 Score=33.93 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=48.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
....+.++..+|+.+|++++....++++++-||. |.+. .+++ .+++|.++++.++..|.+-
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk----~lL~-D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI-VDGI----VILR-EDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTE----ECCC-SSSBHHHHTCCTTSCEEEE
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECCE----EecC-CcCCHHHcCCCCCCEEEEE
Confidence 4456889999999999999999999999998886 3321 2243 4689999999988877654
No 68
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=82.86 E-value=4.1 Score=36.14 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=49.3
Q ss_pred ceEEEeCh-hchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 175 QTVIRLSK-KASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 175 ~~~~~~S~-~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
...+.++. .+|+.+|++++....+++++..||. |.+ .++++ +++|.++++..+..|.+-++..
T Consensus 42 ~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~-~~G-----k~L~D-~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 42 FMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS-GKA-----GFLKD-NMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE-CSS-----SBCCT-TSBTTTTTCSSSCEEEEECSSC
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC-----EECCC-CCcHHHCCCCCCCEEEEEEEcC
Confidence 35678887 8999999999999999999988876 322 23443 6899999999988887765543
No 69
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=82.59 E-value=3.2 Score=37.29 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=50.1
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccC-------CceEEEEEEecC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM-------DQDILLEVQVDN 245 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~-------~q~ilve~~~~~ 245 (877)
...+.+...+||.+|++++-...++++++-||+ |.+ ..|+ .++||.++++.. +..+-+-++.+|
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~G-----k~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~ 83 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDD-----QLLD-DGKTLGECGFTSQTARPQAPATVGLAFRADD 83 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTTTTTCCGGGSBTTBCEEEEEEECCSS
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCC-----eECC-CcCCHHHcCCCcCcccCCCCCEEEEEEecCC
Confidence 345678899999999999999999999999998 432 3343 478999999998 766666666544
No 70
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=82.41 E-value=5 Score=35.94 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=52.3
Q ss_pred ceEEEEecC-CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 163 LCLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 163 ~~l~i~~~~-~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
..++|.+.. +.....+.+.+..++..|++..|+..+++.+.+|+| |.+. . + ..+.|+.++.+.++..|=+
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl-FDG~----r-I-~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQ----R-I-ADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE-ETTE----E-C-CTTCCTTTTTCCTTCEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEE-ECCe----E-C-CCCCCHHHcCCCCCCEEEE
Confidence 344444433 344567889999999999999999999999999988 4332 1 2 2478999999999876533
No 71
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=82.22 E-value=5.5 Score=33.02 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=47.7
Q ss_pred CCceEEEeChhchHHHHHHHHHHH---hCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~---~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (877)
.....+.++...|+.+|++++... -+++++..||. |.+ ..++ .+++|.++++.++..+.+-.
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YAG-----KILS-DDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-ETT-----EECC-TTSBGGGGCCCTTSEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-ECC-----EECc-CCCCHHHcCCCCCCEEEEEE
Confidence 334567889999999999999998 57888888886 422 2333 36899999999988877654
No 72
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=81.98 E-value=4 Score=36.76 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=49.2
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhcc-------CCceEEEEEEecC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ-------MDQDILLEVQVDN 245 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~-------~~q~ilve~~~~~ 245 (877)
...+.+...+||.+|++++....+++++.-||+ |.+ ..|+ .+++|.++++. .+..+-+-++.+|
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~G-----k~Le-D~~TLsdy~I~~~~a~~q~~stL~L~lr~~g 83 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-KDD-----QLLD-DGKTLGECGFTSQTARPQAPATVGLAFRADD 83 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBHHHHTCCTTTSBTTBCEEEEEEEBSSS
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECC-----eECC-CCCCHHHcCcccccccCCCCCEEEEEecCCC
Confidence 356788999999999999999999999999998 433 2333 46899999999 4555656666433
No 73
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.68 E-value=4.4 Score=35.38 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=47.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
.....+.+...+||.+|++++....++++++.||. |.+ ..|+ .+.+|.++++.++..|-+.
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi-~~G-----k~L~-D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KWY-----TIFK-DHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-SSCBHHHHTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE-ECC-----EECC-CCCCHHHcCCCCCCEEEEE
Confidence 34567889999999999999999999999999986 332 2333 3689999999888665443
No 74
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=81.67 E-value=5.8 Score=34.37 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=45.7
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (877)
...+.+.+..++..|++.-|+..+++.+.+|++ |.+. .+ ..+.|+.++.+.++..|
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~-FDG~----rI--~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF-FDGT----KL--SGRELPADLGMESGDLI 93 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE-ETTE----EC--CSCSCHHHHTCCTTEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEE
Confidence 467899999999999999999999999999987 4332 12 34789999999987654
No 75
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.63 E-value=4 Score=33.51 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=46.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
....+.++...|+.+|++++.+..+++++..||. |. + ..+. .+++|.++++..+..+.+-
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~----g-k~L~-d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL-FK----G-KALA-DGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE-ET----T-EECC-TTSBGGGGTCCSSBCCEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-EC----C-eECC-CCCcHHHcCCCCCCEEEEE
Confidence 3456788999999999999999999999988875 42 2 2233 3689999999888766553
No 76
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=81.19 E-value=3.6 Score=36.20 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=48.2
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.+.+..++..|++..|+..+++++.+|++ |.+. .+ ..++|+.++.+.++..|-+
T Consensus 33 ~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~-FdG~----~l--~~~~Tp~dl~medgD~Idv 93 (104)
T 1wz0_A 33 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI--NETDTPAQLEMEDEDTIDV 93 (104)
T ss_dssp SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE-SSSS----BC--CTTSCTTTTTCCTTEEEEE
T ss_pred CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEEEE
Confidence 344567899999999999999999999999999987 4432 22 2468999999998866544
No 77
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=80.86 E-value=5.3 Score=35.49 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=48.3
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
......+.+.+..++..|++..|+..+++++.+|++ |.+. .+ ..++|+.++.+.++..|=+
T Consensus 35 ~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-FdG~----~L--~~~~Tp~dl~mEDgD~Idv 95 (110)
T 2k8h_A 35 DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL-FDGT----PI--DETKTPEELGMEDDDVIDA 95 (110)
T ss_dssp TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-SSSC----BC--CSSSHHHHHHCSSEEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEEEE
Confidence 444578999999999999999999999999999987 4432 22 2468999999998865533
No 78
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=80.18 E-value=5.4 Score=35.58 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=49.6
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
..+.++..+|+.+|++++....+++++..||. |.+ ..+. .+++|.++++.++..|.+-++..|
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~-~~G-----k~L~-D~~tL~~y~i~~g~~i~lv~rl~G 110 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ-YEG-----IFIK-DSNSLAYYNMASGAVIHLALKERS 110 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE-ETT-----EEEC-TTSBHHHHTCCSSCEEEEEECCCS
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChHHEEEE-ECC-----EECC-CCCCHHHCCCCCCCEEEEEEEcCC
Confidence 45778889999999999999999999988876 422 2333 368999999999988877665443
No 79
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.03 E-value=3.4 Score=36.41 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=49.4
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
+....+.+...+|+.+|++++....+++++..||. |.+ ..|++ +++|.++++.++..|.+-+.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~D-~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI-YSG-----KVLQD-SKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE-ETT-----EECCT-TSBTTTTTCCTTCEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE-ECC-----EECCC-cCCHHHcCCCCCCEEEEEEc
Confidence 33456788999999999999999999999888876 432 23443 68999999999988777543
No 80
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.59 E-value=4.2 Score=35.00 Aligned_cols=59 Identities=14% Similarity=0.323 Sum_probs=45.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.....+.++..+|+.+|++++....++++++-||. |. + ..++ +.+|.++++..+..|.+
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~----G-k~Ld--d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YK----G-LVPE--DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SS----S-BCCS--SSBHHHHCCCTTEEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-eeCC--cCcHHHCCCCCCCEEEE
Confidence 34457889999999999999999999999888876 32 2 2233 45999999988876655
No 81
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=77.19 E-value=6.1 Score=39.00 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=53.2
Q ss_pred ceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 163 ~~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
+.+++. .......+.+.+..++..|++.-|+..+++.+.+|++ |.+.. + ..++|+.++++.++..|-+=
T Consensus 30 I~LkV~--~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~-FdG~r----I--~~~~TP~dL~MEdgD~Idv~ 98 (200)
T 3pge_A 30 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGIR----I--QADQTPEDLDMEDNDIIEAH 98 (200)
T ss_dssp EEEEEE--CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE-ETTEE----C--CTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEe--cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE-ECCEE----c--CCCCCHHHcCCCCCCEEEEE
Confidence 344552 3555678899999999999999999999999999988 44322 2 24789999999998776443
No 82
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.74 E-value=9.3 Score=32.66 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=47.8
Q ss_pred CceEEEeChhchHHHHHHHHHHH---hCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~---~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
....+.++...|+.+|++++... -+++++..||. |.+ ..++ .+++|.++++.++..|.+...
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI-YAG-----KILN-DDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE-ETT-----EECC-TTSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE-ECC-----EECC-CcCcHHHCCCCCCCEEEEEEe
Confidence 34567889999999999999998 57898888875 432 2333 368999999999988876543
No 83
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.18 E-value=4.7 Score=35.39 Aligned_cols=61 Identities=11% Similarity=0.253 Sum_probs=48.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (877)
....+.++...|+.+|++++....+++++..||. |.+ ..+. .+++|.++++..+..|.+-.
T Consensus 34 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSG-----RPLT-DKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETT-----EECC-TTSHHHHCCCSSSCEEEEEC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEE
Confidence 3456889999999999999999999999988887 432 2333 36899999999988776653
No 84
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=75.29 E-value=9.2 Score=36.63 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=52.1
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
......+.++..+|+.+|++++....+++++.-||. |.+ ..++ .+.+|.++++..+..+.+-++..+
T Consensus 29 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g-----~~L~-d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 29 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECC-----cccc-ccCCHhHcCCcccceeeeeecccc
Confidence 334457889999999999999999999999988887 432 2233 368999999999988877665443
No 85
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.07 E-value=12 Score=31.81 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=45.3
Q ss_pred eEEEeChhchHHHHHHHHHHHh--CCCCcceEEEEecCCCccccCCCCccCChhhh--hccCCceEEEEEE
Q 002810 176 TVIRLSKKASTRQLYEKVCKLR--GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILLEVQ 242 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~--~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~--~l~~~q~ilve~~ 242 (877)
..+.+...+|+.+|++++.... ++++++-||. |.+ ..|++ +++|.++ ++.++..|.+-.+
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~G-----k~L~D-~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-YSG-----KLLLD-HQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-ETT-----EECCS-SSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-ECC-----EECcC-cCCHHHHhcCCCCCCEEEEEeC
Confidence 4555669999999999999998 9999988886 432 23443 5899999 8888776655433
No 86
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=74.72 E-value=5.1 Score=39.05 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=51.9
Q ss_pred ceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 163 ~~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
+.|++ ..+.....+.|.+..++..|++.-|+..+++.+.+|++ |.+.. + ..++|+.++.+.++..|=+
T Consensus 58 InLKV--k~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL-FDGqR----I--~~ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 58 INLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL-YDGIE----I--QADQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp EEEEE--ECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE-ETTEE----C--CSSCCTTTTTCCTTEEEEE
T ss_pred EEEEE--ecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE-ECCee----c--CCCCCHHHcCCCCCCEEEE
Confidence 34444 34556678899999999999999999999999999987 43321 2 2478999999998866533
No 87
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=74.08 E-value=3.5 Score=34.71 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=46.0
Q ss_pred ceEEE-eChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccC-CCCccCChhhhhccCCceEEEE
Q 002810 175 QTVIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 175 ~~~~~-~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~l-l~~~~~tl~d~~l~~~q~ilve 240 (877)
...+. +...+|+.+|+..+.+..+++++..||- +..+ ...+ +.+.+++|.++++..+..|.+.
T Consensus 11 ~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~-~~~p--~k~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 11 THLLQGLSSRTRLRELQGQIAAITGIAPGSQRIL-VGYP--PECLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCE-ESSC--CCCCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred CEEeeecCCCCCHHHHHHHHHHHhCCCccceEEE-eCCC--CcccccCCCCCCHHHcCCCCCCEEEEE
Confidence 34566 7889999999999999999998877764 2111 1122 2335789999999988777775
No 88
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=74.00 E-value=11 Score=31.41 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccC-CCCccCChhhhhccCCceEEEEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~l-l~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
+++......+...+|+.+|..-+.. .+.+...++|..-+... .+ ..+.++||.|++|.....++||.+
T Consensus 15 pdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk---~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 15 PSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRR---DVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCC---BGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCC---CCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 4454556778899999999988876 45566677776322222 22 236789999999998888888854
No 89
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=73.98 E-value=12 Score=35.23 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
.....+.++..+|+.+|++++....+++++..||. |.+ ..+++ +.+|.++++..+..+-+-++..
T Consensus 91 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~d-~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEG-----KPLED-QLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECCT-TSBGGGGTCCTTCEEEEEECCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECC-----eecCC-CCCHHHcCCCCCCEEEEEEecC
Confidence 34457889999999999999999999999998876 432 23343 6899999999998887765543
No 90
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=73.50 E-value=11 Score=36.22 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=51.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
.....+.+...+|+.+|++++....++++++-||. |.+ ..++ .+++|.++++.++..+-+-++..|
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEE-ETT-----EECC-TTSBGGGGTCCTTCEEEEEECCCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE-ECC-----cccc-CcCcHHHcCCCCCCEEEEEEEecc
Confidence 34457888999999999999999999999988876 432 2233 368999999999988877766544
No 91
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=73.10 E-value=14 Score=36.23 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=55.4
Q ss_pred eccceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 160 VFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 160 vyP~~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
-|-..+.+-. .......+.++..+|+.+|++++....+++++.-||. |.+ ..|++ +++|.++++.++..|.+
T Consensus 103 ~~eMqI~VKt-l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~G-----k~L~D-~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 103 HYGGQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLED-GRTLSDYNIQKESTLHL 174 (189)
T ss_dssp CCCEEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETT-----EECCT-TCBGGGGTCCTTCEEEE
T ss_pred ccceeeeeec-CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-ECC-----EECCC-CCCHHHCCCCCCCEEEE
Confidence 3334444332 2344567889999999999999999999999888876 422 23443 68999999999888777
Q ss_pred EEEec
Q 002810 240 EVQVD 244 (877)
Q Consensus 240 e~~~~ 244 (877)
-++..
T Consensus 175 vlrlr 179 (189)
T 3q3f_A 175 VLRLR 179 (189)
T ss_dssp CCCCC
T ss_pred EEEcC
Confidence 55433
No 92
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=72.75 E-value=15 Score=30.24 Aligned_cols=60 Identities=8% Similarity=0.191 Sum_probs=46.6
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCc-ceEEEEecCCCccccCCCCccCChhhhhccCCceE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~-~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (877)
.+.....+.+-...++.++++.-|+..+|+.+ .+|+- |.+.. .++++++.|+.+.++..|
T Consensus 17 ~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll-FDGdR------Ldp~~tp~DlemeD~D~I 77 (82)
T 3goe_A 17 SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLE-FEGEW------LDPNDQVQSTELEDEDQV 77 (82)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE-ETTEE------CCTTSBGGGSSCCTTCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEE-EcCcc------cCccCChhhhCCcCCcee
Confidence 44555788899999999999999999999988 78865 43321 245789999999887544
No 93
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.36 E-value=6.6 Score=32.75 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=47.5
Q ss_pred eEEEEecCCCCc-eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhcc
Q 002810 164 CLKLIDSRDNSQ-TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 232 (877)
Q Consensus 164 ~l~i~~~~~~~~-~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~ 232 (877)
.+++..++..++ .++++|...++.+|+-.+|..-+++++.+-|.+-... . +.+ +.+++|.|+++.
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~--~-e~L-dLskSLndlgir 75 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQS--Q-EPL-DLTKSLNDLGLR 75 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSC--C-CBC-CTTSCHHHHTCS
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCC--C-ccc-chhcchhhhhhh
Confidence 355555555444 5678999999999999999999999998765533221 1 333 568999999885
No 94
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=72.00 E-value=3 Score=34.78 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
.....+.++..+|+.+|++++.+.++++.+...|. .+......+..+.+.++.++++..|+.++++
T Consensus 13 ~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~--~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 13 DGVKRITATKRETAATFLKKVAKEFGFQNNGFSVY--INRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp SEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCC--CSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEE--ecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 34456668899999999999999999986654433 2222212343446789999999888887765
No 95
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=71.95 E-value=9.7 Score=35.31 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=49.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
....+.++...|+.+|+++++...+++++..||. |.+ ..++ .+++|.++++.++..+.+-.+.
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~g-----~~L~-d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-ECC-----EECC-CCCCHHHcCCCCCCEEEEEEec
Confidence 3456788999999999999999999999998876 432 2233 4689999999998887776553
No 96
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.15 E-value=9.4 Score=33.56 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCc---------------ceEEEEecCCCccccCCCCccCChhhhhccCCce
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQE---------------KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~---------------~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ 236 (877)
......+.+...+||.+|++++...+++++. ..||. |. . ..|.+.+++|.++++.++..
T Consensus 16 ~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~~-G----k~L~dD~~tL~dygI~~g~~ 89 (105)
T 1v2y_A 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-SA-G----EKLTEDRKKLRDYGIRNRDE 89 (105)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-SS-S----CEECCSSSBHHHHTCCSSEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-eC-C----cCccCCcCCHHHcCCCCCCE
Confidence 3445578889999999999999999988652 34655 32 2 23445578999999999887
Q ss_pred EEEEEEe
Q 002810 237 ILLEVQV 243 (877)
Q Consensus 237 ilve~~~ 243 (877)
|.+-.+.
T Consensus 90 l~lv~~l 96 (105)
T 1v2y_A 90 VSFIKKL 96 (105)
T ss_dssp EEEEECS
T ss_pred EEEEehh
Confidence 7665443
No 97
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=68.54 E-value=20 Score=33.65 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=51.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.....+.++..+|+.+|++++....++++++-||.-|..+ ..+ +.+.+|.++++..+..+.+-++
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g----~~L-~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG----VAL-QDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC----CBC-CTTSCGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC----CCC-CCCCCHHHcCCCCCCEEEEEcc
Confidence 3445788999999999999999999999988888755222 123 3578999999999988877655
No 98
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=67.80 E-value=8.1 Score=32.70 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=44.8
Q ss_pred ceEE-EeChhchHHHHHHHHHHHhCCCCcceEEEE--ecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 175 QTVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWD--YFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 175 ~~~~-~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~--~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
...+ .+...+|+.+|++++....++++++-||.. |.+ ..+. .+.+|.++++..+..|.+
T Consensus 18 ~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~G-----k~L~-D~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 18 EYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKG-----KPAE-NDVKLGALKLKPNTKIMM 79 (90)
T ss_dssp EEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETT-----EECC-TTSBHHHHTCCTTEEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCC-----cCcC-CCCCHHHcCCCCCCEEEE
Confidence 3456 778889999999999999999998888762 222 2233 368899999998877655
No 99
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=67.49 E-value=6.2 Score=36.21 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=34.4
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCc
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQR 214 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~ 214 (877)
..+.+-+.+++.+|++.+.+.||++++.+|||.....++
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN 96 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSN 96 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCC
Confidence 467888999999999999999999999999998855443
No 100
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.25 E-value=5.4 Score=34.40 Aligned_cols=58 Identities=10% Similarity=0.232 Sum_probs=44.6
Q ss_pred Cce-EEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 174 SQT-VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 174 ~~~-~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
... .+.+...+|+.+|++++....++++++-||. |.+ ..+.+ + +|.++++..+..|.+
T Consensus 17 ~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~~G-----k~L~D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM-VKG-----GTLKD-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE-ETT-----EECCS-S-CCCSCCCCSSCEEEC
T ss_pred EEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECC-----cCCCC-C-CHHHCCCCCCCEEEE
Confidence 344 4788889999999999999999999888876 422 23443 4 899999888876655
No 101
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=67.15 E-value=5.1 Score=35.32 Aligned_cols=67 Identities=10% Similarity=0.042 Sum_probs=47.9
Q ss_pred CceEEEeC-hhchHHHHHHHHHHHhCCCCcceEEEEecCC---C-ccc--cC--CCCccCChhhhhccCCceEEEE
Q 002810 174 SQTVIRLS-KKASTRQLYEKVCKLRGIEQEKARIWDYFNK---Q-RST--SP--LDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 174 ~~~~~~~S-~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~---~-~~~--~l--l~~~~~tl~d~~l~~~q~ilve 240 (877)
....+.+. ..+|+.+|++++...++++++.-||...... . ... .+ +.+.+++|.++++..+..|.+.
T Consensus 17 G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~ 92 (107)
T 1wf9_A 17 GLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA 92 (107)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEE
Confidence 34467788 8999999999999999999888777622210 0 000 12 1356789999999988877765
No 102
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=64.99 E-value=7.7 Score=32.98 Aligned_cols=36 Identities=8% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIW 207 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW 207 (877)
+....++.++...++.++++.+|+.|++++++..|-
T Consensus 18 n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 18 NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp TSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 334568889999999999999999999998876544
No 103
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=64.49 E-value=21 Score=32.93 Aligned_cols=64 Identities=16% Similarity=0.324 Sum_probs=49.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEec
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (877)
....+.++...|+.+|++++....+++++..||. |.+ ..++ .+++|.++++.++..+.+..+..
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g-----~~L~-d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECC-----eECc-CcccHHHhccCCCCeeEEEeecc
Confidence 3456788999999999999999999999988876 322 2233 46899999999988887765543
No 104
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=62.44 E-value=10 Score=32.07 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=41.9
Q ss_pred EeChhchHHHHHHHH-HHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhc-cCCceEEEE
Q 002810 179 RLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLE 240 (877)
Q Consensus 179 ~~S~~~tv~~l~~~~-~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l-~~~q~ilve 240 (877)
.++..+|+.+|++++ ....++++++-||+ |.+ ..|. .+.+|.++++ ..+..+.+-
T Consensus 19 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 19 DFSPSDTILQIKQHLISEEKASHISEIKLL-LKG-----KVLH-DNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp ECCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETT-----EECC-TTCBHHHHCCCGGGCEEEEE
T ss_pred cCCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECC-----EECc-CcCCHHHcCCCCCCCEEEEE
Confidence 356999999999999 77889999999988 533 2333 3689999998 566666553
No 105
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=61.61 E-value=19 Score=31.16 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=42.7
Q ss_pred EEEeChhchHHHHHHHH-HHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhc-cCCceEEEE
Q 002810 177 VIRLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLE 240 (877)
Q Consensus 177 ~~~~S~~~tv~~l~~~~-~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l-~~~q~ilve 240 (877)
.+.++..+|+.+|++++ ....++++++-||. |.+ ..|. .+++|.++++ ..+..|.+=
T Consensus 35 ~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 35 EHDFSPSDTILQIKQHLISEEKASHISEIKLL-LKG-----KVLH-DNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE-ETT-----EEEC-TTCBGGGSCCBTTBCEEEEE
T ss_pred EEecCCCChHHHHHHHHHHHhcCCChhhEEEE-ECC-----EECc-CcCCHHHcCcCCCCCEEEEE
Confidence 34667999999999999 66679999988876 432 2333 3689999999 777766553
No 106
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.84 E-value=20 Score=31.18 Aligned_cols=61 Identities=8% Similarity=0.133 Sum_probs=45.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.....+.+...+|+.+|++++....++++++-||- ++.. + . ++ .+.+|.++++..+..+.+
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi-~~~~--g-k-L~-D~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK-GWKT--G-D-VE-DSTVLKSLHLPKNNSLYV 78 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE-CCSS--S-C-CC-TTSBHHHHCCCSEEEEEE
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE-ccCC--C-C-CC-CcCCHHHcCCCCCCEEEE
Confidence 33456778889999999999999999999877763 2221 2 2 33 467999999988866555
No 107
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.12 E-value=17 Score=31.81 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=40.4
Q ss_pred hchHHHHHHHHHHHh--CCCCcc-eEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 183 KASTRQLYEKVCKLR--GIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 183 ~~tv~~l~~~~~~~~--~l~~~~-~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
..|+.+|++++.... +++++. .||. |.+ ..|+ .+++|.++++.++..|.+-
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi-~~G-----k~L~-D~~tL~~y~i~~g~~i~lv 97 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI-YCG-----RKLK-DDQTLDFYGIQPGSTVHVL 97 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE-ETT-----EECC-TTCBHHHHTCCTTCEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE-ECC-----eECC-CCCcHHHcCCCCCCEEEEE
Confidence 499999999999999 999998 8885 432 2233 4689999999988877654
No 108
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=56.90 E-value=2.3 Score=38.97 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=0.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
...+.++..+||.+|++++....+++++..||. |.+ ..++ .+.+|.++++.++..|.+-++..|
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~~~I~~gsti~l~~rl~G 75 (128)
T 3u5e_m 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECC-----EECC-CCCchhhhccCCCCEEEEEEEcCC
Confidence 346778889999999999999999999888876 322 2233 378999999999888776666544
No 109
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=56.33 E-value=44 Score=29.31 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=49.3
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCC--CccCChhhhhccCCceEEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD--VSDQTLDDAMLQMDQDILLEV 241 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~--~~~~tl~d~~l~~~q~ilve~ 241 (877)
.++.......+...+|+.+|.+-+....+.+...+.|..-+.. ..+. +.++||+|++|.....++++.
T Consensus 20 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPr----k~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 20 LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPR----REFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSC----CBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCC----cCCcccccCCCHHHCCCCCceEEEEEE
Confidence 3455556778899999999999988887766566666643322 2222 568999999999887777773
No 110
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=60.59 E-value=2.4 Score=34.44 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=44.0
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
..+.++...|+.+|++++....+++++..||. |. + ..++ .+++|.++++.++..+.+-
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~-g----k~L~-d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 13 FPVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FA-G----KELP-NHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 45677888999999999999999999888875 32 2 2333 3689999998887766553
No 111
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=55.17 E-value=19 Score=34.42 Aligned_cols=63 Identities=16% Similarity=0.323 Sum_probs=48.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.....+.++..+|+.+|++++....++++++-||. |.+ ..++ .+.+|.++++..+..+-+-++
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g-----~~L~-D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETT-----EECC-TTSBSGGGTCCTTCEEEECC-
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE-ECC-----ccCC-CCCcHHHhCCCCCCEEEEEEe
Confidence 34457788999999999999999999999888865 432 2333 368999999999887766443
No 112
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.53 E-value=17 Score=30.93 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=42.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
...+.+....|+.+|++++.... ++..||. |.+ ..|.+.+++|.++++.++..|.+-
T Consensus 19 ~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi-~~G-----k~L~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 19 EELAVARPEDTVGTLKSKYFPGQ---ESQMKLI-YQG-----RLLQDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp EEEEEECSSSBHHHHHHHHSSST---TTTCEEE-ETT-----EECCCSSCBTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHhhC---cCcEEEE-ECC-----EEccCCcCCHHHcCCCCCCEEEEE
Confidence 35678899999999999998776 6667775 322 244544489999999988776664
No 113
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=50.70 E-value=46 Score=28.51 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=50.8
Q ss_pred ceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceE
Q 002810 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (877)
Q Consensus 163 ~~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (877)
+.+++. ..+....+.+-+...++.|++.-|+..+++++.+|+- +.+ .. + ..+.|+.++++.++..|
T Consensus 22 IniKV~--~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFl-fDG-~r---I--~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 22 FPLKIR--CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLL-FGE-TE---L--SPTATPRTLKLGVADII 87 (95)
T ss_dssp EEEEEE--CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEE-ETT-EE---C--CTTSCHHHHTCCSSCEE
T ss_pred EEEEEE--cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEE-ECC-cC---C--CCCCCHhHcCCCCCCEE
Confidence 455554 3566678899999999999999999999999999865 433 21 1 34789999999987654
No 114
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=49.75 E-value=93 Score=27.15 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=48.6
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
+++.......+...+|+.+|..-+... +.....++|..-+... .+..+.++||++++|.....++||...
T Consensus 30 lpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk---~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 30 CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRR---ALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCC---BCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCc---CCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 355555677888899999998877744 4445567766433222 332367899999999998888888653
No 115
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=47.30 E-value=44 Score=35.24 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=48.0
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
.....+.++..+|+.+|++++....++++++.||. |.+ ..|+ .+++|.++++.++..|.+-
T Consensus 243 Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi-~~G-----k~L~-D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 243 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-eCC-----eecC-CCCCHHHcCCCCCCEEEEE
Confidence 33456789999999999999999999999988886 322 2333 3689999999988877654
No 116
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=47.14 E-value=46 Score=28.68 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=39.7
Q ss_pred eEEEeChhchHHHHHHHHHHHh-CCC-CcceEEEEecCCCccccCCCCccCChhhh--hccCCceE
Q 002810 176 TVIRLSKKASTRQLYEKVCKLR-GIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDI 237 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~-~l~-~~~~RlW~~~~~~~~~~ll~~~~~tl~d~--~l~~~q~i 237 (877)
..+.+...+|+.+|++++...+ +++ +++-||. |.+ ..|+ .+++|.++ ++..+..|
T Consensus 38 i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI-y~G-----k~L~-D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 38 QTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV-YSG-----RLLP-DHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp EEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE-ETT-----EEEC-TTSBTHHHHTTTCSEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE-ECC-----EECC-CCCCHHHHhcCCCCCCEE
Confidence 4677899999999999999876 455 4777875 432 2333 46899999 88766544
No 117
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=46.95 E-value=4.1 Score=38.53 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=0.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (877)
...+.++..+||.+|++++....+++++..||. |.+ ..|+ .+.+|.++++.++..|.+-++..|
T Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECC-----EEcc-ccCcHHHcCCCCCCEEEEEeeccC
Confidence 346778889999999999999999999888876 322 2233 368999999998887766555443
No 118
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=46.67 E-value=9.2 Score=34.95 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.9
Q ss_pred CCccccccCCCcchHHHHHHHHh
Q 002810 317 GGLAGLQNLGNTCFMNSALQCLV 339 (877)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~ 339 (877)
.-+.|+.|.-++|.+|++||...
T Consensus 11 k~fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 11 KTFYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp EECCCCCCSSSCHHHHHHHHHHH
T ss_pred cccccCCCCCcchHHHHHHHHHH
Confidence 34789999999999999999753
No 119
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=41.09 E-value=71 Score=28.71 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=48.3
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCC-CCccCChhhhhccCCceEEEEEE
Q 002810 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL-DVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 170 ~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll-~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
+++.......+...+|+.+|..-+... +.....++|..-+... .+. .+.++||.|++|.....++|+..
T Consensus 50 lPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk---~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 50 YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRR---KLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCC---EETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCc---CCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 345555677888999999999888665 5555667766433222 222 45689999999998878888743
No 120
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=40.98 E-value=56 Score=29.48 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=43.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHH------hCC--CCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 173 NSQTVIRLSKKASTRQLYEKVCKL------RGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 173 ~~~~~~~~S~~~tv~~l~~~~~~~------~~l--~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
.....+.++..+||.+|++++... -++ +++..||. |.+ ..|+ .++||.++++..+..+.+.
T Consensus 27 G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI-y~G-----K~Le-D~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 27 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQG-----RFLH-GNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE-SSS-----SEEE-SSCBTGGGCCCTTSEEEEE
T ss_pred CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE-ECC-----cCCC-CCCcHHHcCCCCCCceEEE
Confidence 356788999999999999999983 345 36677875 433 2333 4689999999876654444
No 121
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.18 E-value=88 Score=27.79 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=42.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHh------CC--CCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEE
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLR------GI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~------~l--~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (877)
....+.+...+||.+|++++...+ ++ +++..||- |.+ ..|+ .+.||.++++..+....+.
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI-y~G-----K~Le-D~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQG-----RFLH-GNVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE-ETT-----EEEC-SSCBTTTTTCCSSCEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE-ECC-----cCCC-CCCcHHHcCCCCCCceEEE
Confidence 556889999999999999999843 43 47778875 433 2333 3689999998766544443
No 122
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=39.12 E-value=82 Score=26.26 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=39.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhh
Q 002810 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAM 230 (877)
Q Consensus 174 ~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~ 230 (877)
....+.+.+..++.+|.+++++.+.+..+.+.|+ |...... +++...+..++++.
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~Ls-Yk~~~s~-~~vi~~d~dl~~aw 68 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLS-YRPRDSN-ELVPLSEDSMKDAW 68 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEE-ECCTTCS-SCEECCTTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEE-eeCCCCC-CeeccChHHHHHHH
Confidence 4457889999999999999999999998888887 6443322 22122345666653
No 123
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=37.32 E-value=1.8e+02 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=42.1
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCC-cccccccCCCCeEEEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENP-AELISSIKDDEHIVAYR 585 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~-~~~~~~i~~~d~i~~ye 585 (877)
+..+.+....++.+|++.++...|+......+ +|.+++ ++|. +..-..|.+++.|..|-
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL---if~Gk~---LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL---QKGGSV---LKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE---EETTEE---CCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE---EeCCEE---ccCcCCHHHcCCCCCCEEEEEe
Confidence 56678889999999999999999987765544 345443 4443 33345688888887764
No 124
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=36.99 E-value=1.3e+02 Score=25.44 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=33.2
Q ss_pred eeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEE
Q 002810 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (877)
Q Consensus 504 ~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 552 (877)
..+.+.+-..+|. .+.+.+....++.+|++.+....++......+
T Consensus 21 ~~m~I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 65 (98)
T 4hcn_B 21 RPMQIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 65 (98)
T ss_dssp -CCEEEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CeEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEE
Confidence 3456666555554 46778899999999999999999987655433
No 125
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=36.28 E-value=1.6e+02 Score=23.48 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=36.7
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccc--cccCCCCeEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIVA 583 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i~~ 583 (877)
.+.+.+....++.+|++.++...++......++ |+.+ .+.|. ..+ ..|.+++.|++
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~---~L~d~-~tL~~~~i~~~~~l~l 72 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDG-RTLSDYNIQKWSTLFL 72 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTE---ECCTT-SBTGGGTCCTTCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCE---ECCCC-CCHHHcCCCCCCEEEE
Confidence 466788899999999999999999876555433 3443 34432 233 33556665544
No 126
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.58 E-value=37 Score=28.51 Aligned_cols=58 Identities=7% Similarity=0.140 Sum_probs=41.6
Q ss_pred EE-EeChhchHHHHHHHHHHH-hCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 177 VI-RLSKKASTRQLYEKVCKL-RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 177 ~~-~~S~~~tv~~l~~~~~~~-~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.+ .+...+|+.+|++++.+. .+++++.-||- +. ..+ ..|+ .+++|.++++..+..|.+
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~-~~--~~G-k~L~-D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR-LD--PKG-KSLK-DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE-SS--TTS-CCCC-TTCBTTTSSCCSEEEEEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE-ec--CCC-cCcC-CCCCHHHcCCCCCCEEEE
Confidence 46 889999999999999996 68888877763 21 112 2343 368999999887765543
No 127
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=34.30 E-value=8.4 Score=38.08 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (877)
.+.....+.+.+..++..|++.-|+..+++++.+|+. |.+.. + ..+.|+.++++.++..|
T Consensus 28 qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFL-FDGqR----I--~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 28 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGIR----I--QADQTPEDLDMEDNDII 87 (227)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEE-ECCEe----c--CCCCCHHHcCCCCCCEE
Confidence 3455678889999999999999999999999988865 43321 1 24789999999888655
No 128
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=33.93 E-value=1.3e+02 Score=24.97 Aligned_cols=64 Identities=6% Similarity=-0.210 Sum_probs=41.4
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccc--cccCCCCeEEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIVAY 584 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i~~y 584 (877)
.+.++++...++.+|+..+...+|+.+...-++...-++.+.-...+....+ ..|.++..|++-
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 4578899999999999999999999877765554433333332222223333 346666666543
No 129
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.72 E-value=2.3e+02 Score=24.30 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=41.6
Q ss_pred eeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCC-cccccccCCCCeEEEEEe
Q 002810 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENP-AELISSIKDDEHIVAYRF 586 (877)
Q Consensus 520 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~-~~~~~~i~~~d~i~~ye~ 586 (877)
.++.+.+....++.+|++.++...++.+....++ |++++ ++|. +..-..|.++..|++-.+
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GKi---L~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQ---LQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTEE---CCTTSBHHHHTCCSSEEEEEECC
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCeE---CCCCCcHHHcCCCCCCEEEEEEE
Confidence 4677888899999999999999999876655443 55543 4443 222345667776655444
No 130
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.02 E-value=1.9e+02 Score=24.86 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=51.4
Q ss_pred eeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCC-ceeEeccCCc
Q 002810 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH-QIFRFFENPA 569 (877)
Q Consensus 504 ~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~d~~ 569 (877)
....+.++..||.. ..+.|.+..+..++++.++....+..+....++|.+-. .+.++++|-.
T Consensus 8 ~k~vvkvf~~Dgss----ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE 70 (100)
T 1wgr_A 8 RPHVVKVYSEDGAC----RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHE 70 (100)
T ss_dssp SCEEEEEEETTSCE----EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSS
T ss_pred CCEEEEEEecCCCE----EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCch
Confidence 35678888888874 47889999999999999999999988888888888775 6778888754
No 131
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=31.67 E-value=87 Score=30.87 Aligned_cols=62 Identities=24% Similarity=0.328 Sum_probs=46.6
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.......+.+.+..++..|++.-|+..+++.+++|+- |.+.. + ..++|+.++...++..|-+
T Consensus 28 ~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~-fdG~~-----i-~~~~Tpk~L~~ed~d~I~~ 89 (209)
T 3uf8_A 28 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGIR-----I-QADQTPEDLDMEDNDIIEA 89 (209)
T ss_dssp CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEE-ETTEE-----C-CTTCCTTTTTCCTTEEEEE
T ss_pred cCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEE-ECCEe-----c-cCCCChHHhhhcccccchh
Confidence 3444567899999999999999999999999999866 43322 1 2367888888887755533
No 132
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=31.60 E-value=75 Score=34.37 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=46.2
Q ss_pred ceEEEeChhchHHHHHHHHHHHh---CCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceE-EEEEEec
Q 002810 175 QTVIRLSKKASTRQLYEKVCKLR---GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI-LLEVQVD 244 (877)
Q Consensus 175 ~~~~~~S~~~tv~~l~~~~~~~~---~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i-lve~~~~ 244 (877)
...+.+...+||.+|++++...+ +++.++.||. |. + ..|. .+++|.++++..+..| ++-.+..
T Consensus 19 ~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi-y~----G-K~L~-D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 19 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----G-KILS-DDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp EEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE-SS----S-SEEC-SSSBTTTTCCCTTSCEEEEEECCC
T ss_pred EEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE-EC----C-eecC-CcCCHHHcCCCCCCEEEEEEecCC
Confidence 34677888999999999999965 4888888875 32 2 2333 3689999999988876 5555543
No 133
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=31.28 E-value=2e+02 Score=23.52 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=34.5
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEec
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYF 210 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~ 210 (877)
+++....+.+-...|+++-+.++.+..+|.++.+.++...
T Consensus 9 Pn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~ 48 (77)
T 1c1y_B 9 PNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLL 48 (77)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred CCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEec
Confidence 4455567888899999999999999999999999998774
No 134
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=31.10 E-value=2.4e+02 Score=23.98 Aligned_cols=64 Identities=8% Similarity=-0.013 Sum_probs=40.0
Q ss_pred eeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCccccc--ccCCCCeEEE
Q 002810 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (877)
Q Consensus 520 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~~ 583 (877)
..+.++++...++.+|+..+....|+.+...-++..--+.+....+.++...+. .|.+++.|.+
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 457788999999999999999999998877655443222222112222233332 4566666544
No 135
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=30.61 E-value=2e+02 Score=23.73 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=36.9
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCC-cccccccCCCCeEEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENP-AELISSIKDDEHIVAY 584 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~-~~~~~~i~~~d~i~~y 584 (877)
.+.+.+....++.+|+..+....++......++ |+++ .+.|. +..-..|.+++.|++.
T Consensus 13 ~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~---~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 13 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTE---ECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCE---ECCCCCcHHHcCCCCCCEEEEE
Confidence 356788899999999999999999866544333 4443 33432 1222345666665543
No 136
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.49 E-value=41 Score=38.42 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=45.4
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCcc---ccCCC---CccCChhhhhccC-CceEEEEEE
Q 002810 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRS---TSPLD---VSDQTLDDAMLQM-DQDILLEVQ 242 (877)
Q Consensus 176 ~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~---~~ll~---~~~~tl~d~~l~~-~q~ilve~~ 242 (877)
..+++-|..|+.+|++.+.+.+|++.+.+|||.....++. ..++. +...++.++.... .-.+.||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~ 111 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETV 111 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEec
Confidence 4678889999999999999999999999999988554433 12221 1223454443322 235668864
No 137
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=29.94 E-value=2.3e+02 Score=23.24 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=43.9
Q ss_pred eeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCC-cccccccCCCCeEE
Q 002810 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENP-AELISSIKDDEHIV 582 (877)
Q Consensus 504 ~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~-~~~~~~i~~~d~i~ 582 (877)
..+.+.+-..+|. .+.+.+....++.+|+..+....++.....-++ |+++ .+.|. +..-..|.+++.|+
T Consensus 16 ~~m~i~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk---~L~D~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 16 GSMQIFVNTLTGT----HITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDGRTLSDYNIQKESTLH 85 (91)
T ss_dssp CSEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTE---ECCTTCBTGGGTCCTTCEEE
T ss_pred CeEEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE---ECCe---ECCCcCcHHHCCCCCCCEEE
Confidence 3455555555554 467788999999999999999999876554333 3443 34432 12223466666654
Q ss_pred E
Q 002810 583 A 583 (877)
Q Consensus 583 ~ 583 (877)
+
T Consensus 86 l 86 (91)
T 3v6c_B 86 L 86 (91)
T ss_dssp E
T ss_pred E
Confidence 3
No 138
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=29.70 E-value=2.3e+02 Score=24.15 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=48.5
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 164 ~l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
.+++++ +++....+.+-...|+++-+.++.+..+|.++.+.++....+.+. .+ +.+. |+....+.++.||+.
T Consensus 19 ~irvhL-PNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~--~I-dWdt---Di~~L~~eEL~Ve~l 90 (95)
T 2l05_A 19 IVRVFL-PNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKK--PI-GWDT---DISWLTGEELHVEVL 90 (95)
T ss_dssp EEEEEE-TTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEE--EE-CTTS---BGGGGTTCEEEEEES
T ss_pred EEEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCcc--cc-chhH---hhhhccCcEEEEEEe
Confidence 344443 455556788888999999999999999999999999977543222 11 1111 122234678888865
No 139
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=28.71 E-value=1.3e+02 Score=27.07 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=36.9
Q ss_pred EEEeChhchHHHHHHHHHHHh-----CCCC--cceEEEEecCCCccccCCCCccCChhhhhccCC
Q 002810 177 VIRLSKKASTRQLYEKVCKLR-----GIEQ--EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 234 (877)
Q Consensus 177 ~~~~S~~~tv~~l~~~~~~~~-----~l~~--~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~ 234 (877)
.+.+...+|+.+|++++.... ++++ ++.||- |.+ ..|+ .++||.++++..+
T Consensus 31 ~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI-y~G-----K~Le-D~~TLsdy~I~~~ 88 (126)
T 1se9_A 31 PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI-SAG-----KVLE-NSKTVKDYRSPVS 88 (126)
T ss_dssp EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE-ETT-----EECC-TTSBGGGGSCCTT
T ss_pred eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE-ECC-----eECc-CCCcHHHcCCCcC
Confidence 588999999999999997643 4654 566763 332 2333 4689999999876
No 140
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=28.64 E-value=21 Score=26.59 Aligned_cols=15 Identities=40% Similarity=1.205 Sum_probs=11.7
Q ss_pred CCCCCccCCCCCccc
Q 002810 779 GPDDMWYCPQCKEHR 793 (877)
Q Consensus 779 ~~~n~w~C~~Ck~~~ 793 (877)
+.+|.|.|..|+++-
T Consensus 7 ~~eD~WkC~~C~k~N 21 (53)
T 2cr8_A 7 GSEDEWQCTECKKFN 21 (53)
T ss_dssp CCSCCEECSSSCCEE
T ss_pred CCcceeecccccccC
Confidence 456889999998653
No 141
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=26.54 E-value=2.9e+02 Score=23.26 Aligned_cols=62 Identities=13% Similarity=0.010 Sum_probs=39.6
Q ss_pred eeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccc--cccCCCCeEE
Q 002810 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIV 582 (877)
Q Consensus 520 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i~ 582 (877)
..+.++++...++.+|+..+....|+.+...-++..- ..++.+.+.++...+ ..|.+++.|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 3567888899999999999999999987766444322 233333332223333 3456666554
No 142
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.52 E-value=2.5e+02 Score=23.76 Aligned_cols=57 Identities=11% Similarity=0.215 Sum_probs=38.3
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCccccc--ccCCCCeEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~~ 583 (877)
.+.+.+..+.++.+|+..+....++...+..++ |+. +.+.|....+. .|.+++.|++
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~g---k~L~D~~~tL~~ygI~~g~~l~l 81 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YME---QLLTDDHCSLGSYGLKDGDMVVL 81 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETT---EEECCSSSBHHHHTCCTTEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECC---EECCCCcccHHHCCCCCCCEEEE
Confidence 567888999999999999999999876655443 344 34555433333 4666665543
No 143
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=26.42 E-value=61 Score=34.35 Aligned_cols=64 Identities=8% Similarity=0.258 Sum_probs=44.8
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 172 ~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
.+....+.+...+|+.+|++++.+..++++++-||.- . .-++ ..+. .+.+|.++++..+..|.+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~-~-k~~G-k~l~-D~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN-L-KYKG-KTAA-DNVKISALELKPNFKLMM 76 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT-C-BSSS-SBCC-TTSBTTSSCCC--CEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee-c-ccCC-cccC-ccccHHHcCCCCCCEEEE
Confidence 3445678899999999999999999999998777651 1 0112 2333 367888999998887755
No 144
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=25.88 E-value=3.3e+02 Score=23.66 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=50.1
Q ss_pred EEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEEe
Q 002810 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (877)
Q Consensus 165 l~i~~~~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (877)
+++++ +++....+.+-.-.|+++-+.++.+..+|.++.+.++.......+....-+.+.-+. ...+.++.||+..
T Consensus 21 ir~hL-PNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~~~~i~WdtDi~---~L~geEL~Ve~ld 95 (107)
T 1rrb_A 21 IRVFL-PNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTDAA---SLIGEELQVDFLK 95 (107)
T ss_dssp EEEEC-TTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEEECCCSCSSSCEECCTTCBHH---HHTTSEEEEEEC-
T ss_pred EEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeEEccccCCCcccccchhhhhh---hccCcEEEEEEcc
Confidence 44442 455567889999999999999999999999999999977433222122222332232 2346788888753
No 145
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.15 E-value=2e+02 Score=24.08 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=40.6
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeC-CceeEeccCCcccc--cccCCCCeEEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN-HQIFRFFENPAELI--SSIKDDEHIVAY 584 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~d~~~~~--~~i~~~d~i~~y 584 (877)
...+++++..++.+|+..+...+|+.....-+....-. ......+.|....+ ..+.+++.|++-
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 45667889999999999999999988776544433211 11222244444444 346677776553
No 146
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=24.36 E-value=89 Score=30.84 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=43.2
Q ss_pred CCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHH
Q 002810 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKL 396 (877)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l 396 (877)
.|.+=|.=.-|.||+||++=.|=++... + .++..++.. -+|..|...+
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----~-----------------------~~aw~~f~~-----Gd~~~fV~~~ 58 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF----N-----------------------NEAWEKFKK-----GDVMDFVNLC 58 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC----C-----------------------CHHHHHHTT-----TCCHHHHHHH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh----H-----------------------HHHHHHHhC-----CChHHHHHHH
Confidence 4666777778999999998777665543 1 111111112 1244444444
Q ss_pred hhhcCCCCCCCcccHHHHHHHHH
Q 002810 397 ARFAPQFSGYNQHDSQELLAFLL 419 (877)
Q Consensus 397 ~~~~~~F~~~~QqDA~Efl~~LL 419 (877)
-... ...-++--||+++|..||
T Consensus 59 Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 59 YAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp HHHH-TCCTTSCCCHHHHHHHHH
T ss_pred HHHc-CCCCCCCcCHHHHHHHHH
Confidence 3222 355678899999999998
No 147
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=24.28 E-value=2.9e+02 Score=22.52 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=41.9
Q ss_pred eEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCccccc--ccCCCCeEEE
Q 002810 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (877)
Q Consensus 506 ~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~~ 583 (877)
+.+.+...+|+ .+.+.++.+.++.+|++.++...++......++ |+++ .+.| ...+. .|.+++.|++
T Consensus 10 ~~i~v~~~~G~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk---~L~D-~~tL~~~gi~~g~~i~l 78 (88)
T 1sif_A 10 LQLFIKTLTGK----TFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI---FAGK---QLED-GRTLSDYNIQKESTLHL 78 (88)
T ss_dssp CEEEEEETTSC----EEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE---ETTE---ECCT-TSBSGGGTCCTTCEEEE
T ss_pred eEEEEEeCCCC----EEEEEECCCChHHHHHHHHHHHHCcChhhEEEE---ECCE---ECCC-CCcHHHcCCCCCCEEEE
Confidence 34455555554 466788899999999999999999876554433 3443 3443 23333 4556665543
No 148
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=23.33 E-value=24 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.851 Sum_probs=12.5
Q ss_pred cCCCCCCccCCCCCccc
Q 002810 777 PLGPDDMWYCPQCKEHR 793 (877)
Q Consensus 777 ~L~~~n~w~C~~Ck~~~ 793 (877)
.++..|.|.|..|+++-
T Consensus 7 di~~~D~WkC~~C~~~N 23 (46)
T 2c6a_A 7 EISLADYWKCTSCNEMN 23 (46)
T ss_dssp SSCGGGCEECTTTCCEE
T ss_pred ccCccceEecccccccC
Confidence 34455789999998754
No 149
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=23.28 E-value=2.2e+02 Score=22.53 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=36.5
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCc-ccccccCCCCeEEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPA-ELISSIKDDEHIVAY 584 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~-~~~~~i~~~d~i~~y 584 (877)
.+.+.+....++.+|++.+++..++......+ +|+++ .+.|.. ..-..|.+++.|.++
T Consensus 15 ~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL---~~~G~---~L~d~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 15 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF---LFEGQ---RIADNHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEE---EETTE---ECCTTCCHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEE---EECCE---EeCCCCCHHHcCCCCCCEEEEE
Confidence 35667889999999999999999987654333 34443 333321 122346666666543
No 150
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.22 E-value=3.2e+02 Score=22.83 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=45.6
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhhhccCCceEEEEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (877)
+++....+.+-.-.|+++-+.++++..+|.++.+.++......+.....+. |+....+.++.||+.
T Consensus 15 Pn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdt------Di~~L~~eEL~Ve~l 80 (86)
T 1wxm_A 15 PNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDT------AIAPLDGEELIVEVL 80 (86)
T ss_dssp SSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSS------BSTTCSSCEEEEEEC
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccchhH------hhhhccCcEEEEEEc
Confidence 455556788889999999999999999999999999977543222111111 112234678888865
No 151
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=22.79 E-value=2.3e+02 Score=23.05 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=36.3
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCccccc--ccCCCCeEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~ 582 (877)
.+.+.++...++.+|++.+....++.....-++ |+++ .++|. ..+. .|.+++.|+
T Consensus 23 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk---~L~D~-~tL~~~gi~~g~~l~ 79 (85)
T 2kd0_A 23 SIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI---FKGK---VLVET-STLKQSDVGSGAKLM 79 (85)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE---ETTE---ECCTT-CBTTTTTCCTTEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCe---ECCCc-CCHHHCCCCCCCEEE
Confidence 456788899999999999999999876655443 4543 34432 3333 345555544
No 152
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=21.75 E-value=3.3e+02 Score=22.17 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=41.9
Q ss_pred eEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccc--cccCCCCeEEE
Q 002810 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIVA 583 (877)
Q Consensus 506 ~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i~~ 583 (877)
+.+.+-..+|+ .+.+.+....++.+|+..++...++......++ |+++ .+.|. ..+ ..|.+++.|++
T Consensus 5 m~I~Vk~~~g~----~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk---~L~D~-~tL~~~~I~~g~~i~l 73 (88)
T 2hj8_A 5 LSILVRNNKGR----SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGK---PLEDQ-LPLGEYGLKPLSTVFM 73 (88)
T ss_dssp EEEEEEETTSC----EEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE---SSSS---CCCTT-SBHHHHHCSTTCEEEE
T ss_pred EEEEEECCCCC----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCE---ECCCC-CcHHHcCCCCCCEEEE
Confidence 33444444443 356778889999999999999999876665443 4443 23332 233 24666666654
Q ss_pred E
Q 002810 584 Y 584 (877)
Q Consensus 584 y 584 (877)
.
T Consensus 74 ~ 74 (88)
T 2hj8_A 74 N 74 (88)
T ss_dssp E
T ss_pred E
Confidence 3
No 153
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=21.70 E-value=72 Score=26.47 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=45.3
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCcceE-EEEecCCCccccCCCCccCChhhhhccCCceEEE
Q 002810 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKAR-IWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (877)
Q Consensus 171 ~~~~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~R-lW~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (877)
+......+++|..-|+++|++.+.+.|+++..... -| +.-.++. .++ ..+++|.|+.+.+|..+-+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~-irv~NK~-~~L-~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHW-IRVVNKD-KVF-SGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCE-EEEGGGT-EEE-ETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCE-EEEecCC-EEE-cCCCEEeeCCcCCCCEEEE
Confidence 45566789999999999999999999999853211 12 2112222 233 4578899999988865543
No 154
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=20.77 E-value=4e+02 Score=22.86 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=36.2
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCccccc--ccCCCCeEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~~ 583 (877)
.+.+.+....++.+|+..+....++......++ |+.+ .+.|. ..+. .|.+++.|++
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk---~L~D~-~tL~~~gI~~gs~I~l 104 (111)
T 3vdz_A 47 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDG-RTLSDYNIQKESTLHL 104 (111)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTE---ECCTT-SBTTTTTCCTTCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE---ECCE---ECCCC-CcHHHCCCCCCCEEEE
Confidence 456788899999999999999999876554333 4443 34442 2332 3555655543
No 155
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=20.63 E-value=1.4e+02 Score=31.48 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=45.5
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChH-HHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002810 316 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (877)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (877)
..|.+=|.=.-|.||+||++=.|=++.. |+.- +++++..++..+ +|..|..
T Consensus 99 ~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~~-----------------------~l~~aw~~f~~G-----d~~~FVa 150 (315)
T 2fe8_A 99 VGGLTSIKWADNNCYLSSVLLALQQLEVKFNAP-----------------------ALQEAYYRARAG-----DAANFCA 150 (315)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCCCBSSH-----------------------HHHHHHHHHHHT-----CCHHHHH
T ss_pred ECCEEEEeecCCccHHHHHHHHHHhcCCccCCH-----------------------HHHHHHHHHhCC-----ChHHHHH
Confidence 4566777777899999999866654432 2211 122222222332 3666666
Q ss_pred HHhhhcCCCCCCCcccHHHHHHHHHH
Q 002810 395 KLARFAPQFSGYNQHDSQELLAFLLD 420 (877)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd 420 (877)
.+-... ...-++--||+++|..||.
T Consensus 151 ~~Ya~~-~~~~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 151 LILAYS-NKTVGELGDVRETMTHLLQ 175 (315)
T ss_dssp HHHHHT-TCCTTSCCCHHHHHHHHHT
T ss_pred HHHHhc-CCCCCCCccHHHHHHHHHh
Confidence 554433 3445688999999998843
No 156
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.55 E-value=3.3e+02 Score=21.80 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=36.4
Q ss_pred eEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCccccc--ccCCCCeEEE
Q 002810 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (877)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~~ 583 (877)
.+.+.+..+.++.+|++.+++..++......++ |+.+ .++|. ..+. .|.+++.|++
T Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~---~~Gk---~L~d~-~tL~~~~i~~g~~i~l 76 (87)
T 1wh3_A 19 SYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE---FQGQ---VLQDW-LGLGIYGIQDSDTLIL 76 (87)
T ss_dssp EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE---ETTE---ECCSS-SBHHHHTCCTTEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE---ECCE---EccCC-CCHHHCCCCCCCEEEE
Confidence 456788899999999999999999876655443 4443 34432 2232 3555555543
No 157
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=20.46 E-value=3.5e+02 Score=22.76 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=41.9
Q ss_pred eeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCceeEeccCCcccc--cccCCCCeE
Q 002810 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHI 581 (877)
Q Consensus 504 ~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i 581 (877)
..+.+.+-...+ ++.+.+....++.+|++.+....++......++ |+++ .++|. ..+ ..|.+++.|
T Consensus 21 ~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk---~L~D~-~tL~~ygI~~gstI 88 (100)
T 1yqb_A 21 HLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGK---ILKDP-DSLAQCGVRDGLTV 88 (100)
T ss_dssp TEEEEEEECSSC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTE---ECCTT-SBHHHHTCCTTCEE
T ss_pred CeEEEEEEcCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCE---ECCCc-CcHHHCCCCCCCEE
Confidence 345555544443 247788899999999999999999875544332 4443 34442 223 345666665
Q ss_pred EE
Q 002810 582 VA 583 (877)
Q Consensus 582 ~~ 583 (877)
++
T Consensus 89 ~l 90 (100)
T 1yqb_A 89 HL 90 (100)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 158
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.31 E-value=3.7e+02 Score=22.27 Aligned_cols=34 Identities=6% Similarity=-0.181 Sum_probs=28.5
Q ss_pred eeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEE
Q 002810 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (877)
Q Consensus 520 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 553 (877)
..+.++++...++.+|+..+....|+.....-++
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~ 52 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELE 52 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCE
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEE
Confidence 4578899999999999999999999987665443
No 159
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=20.25 E-value=31 Score=28.53 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=22.5
Q ss_pred CCccCCCCCccceeEEEEEeecCCCeEEEEEe-cee-ec
Q 002810 782 DMWYCPQCKEHRQATKKLDLWMLPDVLVFHLK-RFS-YS 818 (877)
Q Consensus 782 n~w~C~~Ck~~~~a~K~~~i~~lP~iLiihLK-RF~-~~ 818 (877)
..-+||+|+..+--.-.+.+- ----+.+||+ ||. ++
T Consensus 29 ~k~FCp~CGn~TL~Rvsvsvd-~~G~~~~hl~~n~~~~n 66 (79)
T 2con_A 29 NRVFCGHCGNKTLKKVSVTIN-DDGTLHMHFSRNPKVLN 66 (79)
T ss_dssp SCCSCSSSCCSCCEEEECBCC-SSCCCBCCCCCCCCCCC
T ss_pred ccccccccCcccceEEEEEEC-CCCcEEEeccCCccccc
Confidence 457999999864332222333 2356789997 577 64
Done!