BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002812
(877 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 292/899 (32%), Positives = 456/899 (50%), Gaps = 70/899 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP +P YD+ + P+LTS F S I+V V T+FI+L++ DL I N ++
Sbjct: 68 RLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEED 127
Query: 69 VSSKQALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYRSSYE-L 126
+ + KV A E + L E L P +A+ F+ L D +GFY+S+Y L
Sbjct: 128 SRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTL 187
Query: 127 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGN 185
GE + +AVT FEP AR FPC+DEP KA F I + S +ALSNMP + +++G
Sbjct: 188 GGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGG 247
Query: 186 MKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 245
+ ++ + MSTYLVA ++ F + TS G+KV +Y K NQ +AL ++K L
Sbjct: 248 LLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLL 307
Query: 246 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATV 305
+ Y++YF + Y L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V V
Sbjct: 308 DFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRV 367
Query: 306 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL 365
+AHELAHQWFGNLVTMEWW +WLNEGFA ++ +A ++ +PE + FL+ C E +
Sbjct: 368 IAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITK 427
Query: 366 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 425
D L S PI +I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK++
Sbjct: 428 DSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSY 487
Query: 426 SNAKTEDLWAALEE---------------------------GSGEPVNKLMNSWTKQKGY 458
NAK +DLW++L G V ++M +WT QKG
Sbjct: 488 RNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGI 547
Query: 459 PVIXXXXXXXXXXXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLLYN 509
P++ D + W +P+T S +V +L +
Sbjct: 548 PLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKS 607
Query: 510 KSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSE 567
K+D+ D+ E W+K NV+ G+Y V Y+ +L + L
Sbjct: 608 KTDTLDLPE-----------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRP 656
Query: 568 TDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPE 627
DR G++ D F L A + TL L + ET L L +SY R
Sbjct: 657 KDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDRRN 714
Query: 628 LLDY---LKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASK 684
+ D LK++ + F+ ++ W K S D +LR + L H + +A++
Sbjct: 715 ISDISENLKRYLLQYFKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHAPCIQKAAE 772
Query: 685 RFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 744
F ++ +P D+ K Y V A +G+ LL Y + S E+ +IL +
Sbjct: 773 LFSQWMESSGKLNIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKILYA 827
Query: 745 LASCPDVNIVLEVLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISKTW 800
L++ +L+++ + +V ++Q+ ++ +A +G++ AW ++++NW H+ K +
Sbjct: 828 LSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKF 887
Query: 801 GSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 857
G + I IS + F+S +K++EV+ FF S + + +E + N KW+E
Sbjct: 888 DLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLE 946
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 291/899 (32%), Positives = 455/899 (50%), Gaps = 70/899 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP +P YD+ + P+LTS F S I+V V T+FI+L++ DL I N ++
Sbjct: 68 RLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEED 127
Query: 69 VSSKQALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYRSSYE-L 126
+ + KV A E + L E L P +A+ F+ L D +GFY+S+Y L
Sbjct: 128 SRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTL 187
Query: 127 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGN 185
GE + +AVT FEP AR FPC+DEP KA F I + S +ALSNMP + +++G
Sbjct: 188 GGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGG 247
Query: 186 MKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 245
+ ++ + MSTYLVA ++ F + TS G+KV +Y K NQ +AL ++K L
Sbjct: 248 LLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLL 307
Query: 246 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATV 305
+ Y++YF + Y L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V V
Sbjct: 308 DFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRV 367
Query: 306 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL 365
+AHELAHQWFGNLVTMEWW +WL EGFA ++ +A ++ +PE + FL+ C E +
Sbjct: 368 IAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITK 427
Query: 366 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 425
D L S PI +I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK++
Sbjct: 428 DSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSY 487
Query: 426 SNAKTEDLWAALEE---------------------------GSGEPVNKLMNSWTKQKGY 458
NAK +DLW++L G V ++M +WT QKG
Sbjct: 488 RNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGI 547
Query: 459 PVIXXXXXXXXXXXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLLYN 509
P++ D + W +P+T S +V +L +
Sbjct: 548 PLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKS 607
Query: 510 KSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSE 567
K+D+ D+ E W+K NV+ G+Y V Y+ +L + L
Sbjct: 608 KTDTLDLPE-----------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRP 656
Query: 568 TDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPE 627
DR G++ D F L A + TL L + ET L L +SY R
Sbjct: 657 KDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDRRN 714
Query: 628 LLDY---LKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASK 684
+ D LK++ + F+ ++ W K S D +LR + L H + +A++
Sbjct: 715 ISDISENLKRYLLQYFKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHAPCIQKAAE 772
Query: 685 RFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 744
F ++ +P D+ K Y V A +G+ LL Y + S E+ +IL +
Sbjct: 773 LFSQWMESSGKLNIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKILYA 827
Query: 745 LASCPDVNIVLEVLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISKTW 800
L++ +L+++ + +V ++Q+ ++ +A +G++ AW ++++NW H+ K +
Sbjct: 828 LSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKF 887
Query: 801 GSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 857
G + I IS + F+S +K++EV+ FF S + + +E + N KW+E
Sbjct: 888 DLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLE 946
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 291/898 (32%), Positives = 449/898 (50%), Gaps = 68/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAAD-LTINNRSVSFTN 67
RLP +P Y++ L P LT G + +V +FI D + I+++ +++T
Sbjct: 53 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIV---RFICQEPTDVIIIHSKKLNYTT 109
Query: 68 K--------VSSKQALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKG 118
+ V Q E + ELVE E LV+ +L P M + F+G L D + G
Sbjct: 110 QGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAG 169
Query: 119 FYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI 178
FYRS Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 170 FYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPK 229
Query: 179 DEKV----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQG 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 230 GSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEG 289
Query: 235 K--FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQ 292
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q
Sbjct: 290 HGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQ 349
Query: 293 HSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIW 352
S+ +NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 350 SSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLK 409
Query: 353 TQFLD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 408
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 410 DLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLT 469
Query: 409 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 460
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 470 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 529
Query: 461 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 515
I S D WIVPI+ KN ++ + D
Sbjct: 530 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 582
Query: 516 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 573
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 583 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 640
Query: 574 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 629
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 641 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 698
Query: 630 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 687
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 699 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 756
Query: 688 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 747
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 757 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 813
Query: 748 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 803
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 814 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 873
Query: 804 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 857
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 874 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 931
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 290/898 (32%), Positives = 449/898 (50%), Gaps = 68/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAAD-LTINNRSVSFTN 67
RLP +P Y++ L P LT G + +V +F+ D + I+++ +++T
Sbjct: 10 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIV---RFLCQEPTDVIIIHSKKLNYTT 66
Query: 68 K--------VSSKQALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKG 118
+ V Q E + ELVE E LV+ +L P M + F+G L D + G
Sbjct: 67 QGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAG 126
Query: 119 FYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI 178
FYRS Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 127 FYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPK 186
Query: 179 DEKV----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQG 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 187 GSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEG 246
Query: 235 K--FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQ 292
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q
Sbjct: 247 HGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQ 306
Query: 293 HSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIW 352
S+ +NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 307 SSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLK 366
Query: 353 TQFLD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 408
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 367 DLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLT 426
Query: 409 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 460
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 427 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 486
Query: 461 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 515
I S D WIVPI+ KN ++ + D
Sbjct: 487 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 539
Query: 516 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 573
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 540 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 597
Query: 574 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 629
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 598 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 655
Query: 630 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 687
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 656 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 713
Query: 688 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 747
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 714 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 770
Query: 748 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 803
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 771 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 830
Query: 804 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 857
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 831 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 888
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 290/898 (32%), Positives = 449/898 (50%), Gaps = 68/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAAD-LTINNRSVSFTN 67
RLP +P Y++ L P LT G + +V +F+ D + I+++ +++T
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIV---RFLCQEPTDVIIIHSKKLNYTT 65
Query: 68 K--------VSSKQALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKG 118
+ V Q E + ELVE E LV+ +L P M + F+G L D + G
Sbjct: 66 QGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAG 125
Query: 119 FYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI 178
FYRS Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 126 FYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPK 185
Query: 179 DEKV----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQG 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 186 GSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEG 245
Query: 235 K--FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQ 292
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q
Sbjct: 246 HGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQ 305
Query: 293 HSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIW 352
S+ +NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 306 SSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLK 365
Query: 353 TQFLD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 408
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 366 DLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLT 425
Query: 409 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 460
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 426 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 485
Query: 461 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 515
I S D WIVPI+ KN ++ + D
Sbjct: 486 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 538
Query: 516 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 573
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 539 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 596
Query: 574 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 629
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 597 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 654
Query: 630 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 687
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 655 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 712
Query: 688 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 747
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 713 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 769
Query: 748 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 803
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 770 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 829
Query: 804 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 857
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 830 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 289/898 (32%), Positives = 449/898 (50%), Gaps = 68/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAAD-LTINNRSVSFTN 67
RLP +P Y++ L P LT G + +V +F+ D + I+++ +++T
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIV---RFLCQEPTDVIIIHSKKLNYTT 65
Query: 68 K--------VSSKQALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKG 118
+ V Q E + ELVE E LV+ +L P M + F+G L D + G
Sbjct: 66 QGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAG 125
Query: 119 FYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI 178
FYRS Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 126 FYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPK 185
Query: 179 DEKV----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQG 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 186 GSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEG 245
Query: 235 K--FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQ 292
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q
Sbjct: 246 HGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQ 305
Query: 293 HSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIW 352
S+ +NK+RV TV+AH+LAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 306 SSSISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLK 365
Query: 353 TQFLD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 408
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 366 DLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLT 425
Query: 409 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 460
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 426 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 485
Query: 461 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 515
I S D WIVPI+ KN ++ + D
Sbjct: 486 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 538
Query: 516 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 573
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 539 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 596
Query: 574 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 629
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 597 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 654
Query: 630 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 687
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 655 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 712
Query: 688 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 747
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 713 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 769
Query: 748 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 803
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 770 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 829
Query: 804 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 857
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 830 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 282/900 (31%), Positives = 448/900 (49%), Gaps = 80/900 (8%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ +
Sbjct: 59 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISR--ATLRKG 116
Query: 69 VSSKQALEPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYELN 127
+ + EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 117 AGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTK 176
Query: 128 -GEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGN 185
GE + +A TQFEP AR FPC+DEPA KA+F I + +A+SNMP++ V
Sbjct: 177 EGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEG 236
Query: 186 MKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 245
+ + + MSTYLVA +I F+ V T G+KV VY K NQ +AL+ AV L
Sbjct: 237 LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLL 296
Query: 246 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATV 305
E Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A++K +
Sbjct: 297 EFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMT 356
Query: 306 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL 365
VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F +C + + +
Sbjct: 357 VAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEV 416
Query: 366 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 425
D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K++
Sbjct: 417 DALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSY 476
Query: 426 SNAKTEDLWAALEE---------------------------GSGEPVNKLMNSWTKQKGY 458
N K EDLW ++ G V +MN+WT QKG+
Sbjct: 477 KNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGF 536
Query: 459 PVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFD 515
P+I G+P G W VP+T D+ FLL K+D
Sbjct: 537 PLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLI 596
Query: 516 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGI 573
+ E + WIK NV G+Y V Y+ D L ++ +S DR +
Sbjct: 597 LPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASL 645
Query: 574 LDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPELL 629
+++ F L + ++ L L ETE + L+ LI + YK+ + E+
Sbjct: 646 INNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVE 702
Query: 630 DYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAF 689
K F I L ++ +K W + S + +LR ++ + ++ + A F +
Sbjct: 703 TQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKW 760
Query: 690 LADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCP 749
LP D+ A + V A G++ L Y+ + S EK++I A C
Sbjct: 761 KESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCR 813
Query: 750 DVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHISKT 799
N E L +LL ++++Q+ + +++ GR AW++L+ NW+ + +
Sbjct: 814 TQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQK 869
Query: 800 WGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 857
+ G I + + F++ ++ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 870 FELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 929
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 285/908 (31%), Positives = 450/908 (49%), Gaps = 96/908 (10%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ +
Sbjct: 8 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISR--ATLRKG 65
Query: 69 VSSKQALEPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYELN 127
+ + EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 66 AGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTK 125
Query: 128 -GEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNM 186
GE + +A TQFEP AR FPC+DEPA KA+F I + +A+SNMP++
Sbjct: 126 EGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLV-------- 177
Query: 187 KTVSYQESPI---------MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFA 237
K+V+ E I MSTYLVA +I F+ V T G+KV VY K NQ +A
Sbjct: 178 KSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYA 237
Query: 238 LNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAA 297
L+ AV LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A+
Sbjct: 238 LDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSAS 297
Query: 298 NKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD 357
+K + VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F
Sbjct: 298 SKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFG 357
Query: 358 ECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLA 417
+C + + +D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ +
Sbjct: 358 KCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIV 417
Query: 418 SYIKKYACSNAKTEDLWAALEE---------------------------GSGEPVNKLMN 450
Y++K++ N K EDLW ++ G V +MN
Sbjct: 418 QYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMN 477
Query: 451 SWTKQKGYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLL 507
+WT QKG+P+I G+P G W VP+T D+ FLL
Sbjct: 478 TWTLQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLL 537
Query: 508 YNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--L 565
K+D + E + WIK NV G+Y V Y+ D L ++ +
Sbjct: 538 KTKTDVLILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAV 586
Query: 566 SETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIA 621
S DR ++++ F L + ++ L L ETE + L+ LI + YK+ +
Sbjct: 587 SSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--ME 643
Query: 622 ADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNE 681
E+ K F I L ++ +K W + S + +LR ++ + ++ +
Sbjct: 644 KRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQR 701
Query: 682 ASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRI 741
A F + LP D+ A + V A G++ L Y+ + S EK++I
Sbjct: 702 AEGYFRKWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI 756
Query: 742 LSSLASCPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKD 791
A C N E L +LL ++++Q+ + +++ GR AW++L+
Sbjct: 757 --EFALCRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRK 810
Query: 792 NWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERV 849
NW+ + + + G I + + F++ ++ EV+ FFSS + R ++Q+IE +
Sbjct: 811 NWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETI 870
Query: 850 QINAKWVE 857
+ N W++
Sbjct: 871 EENIGWMD 878
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 286/908 (31%), Positives = 451/908 (49%), Gaps = 96/908 (10%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ +
Sbjct: 17 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISR--ATLRKG 74
Query: 69 VSSKQALEPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYELN 127
+ + EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 75 AGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTK 134
Query: 128 -GEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNM 186
GE + +A TQFEP AR FPC+DEPA KA+F I + +A+SNMP++
Sbjct: 135 EGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLV-------- 186
Query: 187 KTVSYQESPI---------MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFA 237
K+V+ E I MSTYLVA +I F+ V T G+KV VY K NQ +A
Sbjct: 187 KSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYA 246
Query: 238 LNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAA 297
L+ AV LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A+
Sbjct: 247 LDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSAS 306
Query: 298 NKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD 357
+K + VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F
Sbjct: 307 SKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFG 366
Query: 358 ECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLA 417
+C + + +D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ +
Sbjct: 367 KCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIV 426
Query: 418 SYIKKYACSNAKTEDLW---AALEEGSGEP------------------------VNKLMN 450
Y++K++ N K EDLW A++ G V +MN
Sbjct: 427 QYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQERVDVKTMMN 486
Query: 451 SWTKQKGYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLL 507
+WT Q+G+P+I G+P G W VP+T D+ FLL
Sbjct: 487 TWTLQRGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLL 546
Query: 508 YNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--L 565
K+D + E + WIK NV G+Y V Y+ D L ++ +
Sbjct: 547 KTKTDVLILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAV 595
Query: 566 SETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIA 621
S DR ++++ F L + ++ L L ETE + L+ LI + YK+ +
Sbjct: 596 SSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--ME 652
Query: 622 ADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNE 681
E+ K F I L ++ +K W + S + +LR E+ + ++ +
Sbjct: 653 KRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSELLLLACVHNYQPCVQR 710
Query: 682 ASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRI 741
A F + LP D+ A + V A G++ L Y+ + S EK++I
Sbjct: 711 AEGYFRKWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI 765
Query: 742 LSSLASCPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKD 791
A C N E L +LL ++++Q+ + +++ GR AW++L+
Sbjct: 766 --EFALCRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRK 819
Query: 792 NWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERV 849
NW+ + + + G I + + F++ ++ EV+ FFSS + R ++Q+IE +
Sbjct: 820 NWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETI 879
Query: 850 QINAKWVE 857
+ N W++
Sbjct: 880 EENIGWMD 887
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 287/892 (32%), Positives = 439/892 (49%), Gaps = 57/892 (6%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP P Y + L P LT F GS + T I++++ L T++
Sbjct: 11 RLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQG 70
Query: 62 SVSFTNKVSSKQALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFY 120
V Q + K ELVE E LV+ +L + FEG L D + GFY
Sbjct: 71 HRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSLVKDSQYEMDSEFEGELADDLAGFY 130
Query: 121 RSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNM----P 176
RS Y +K +A TQ + ADAR+ FPC+DEPA KA F ITL P +L ALSNM P
Sbjct: 131 RSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGP 190
Query: 177 VIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK--ANQG 234
D N + +P MSTYL+A ++ FDYVE S+G+ +R++ + A G
Sbjct: 191 STPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHG 250
Query: 235 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHS 294
+ALNV L + ++ PY LPK D I +PDF AGAMEN+GLVTYRE +LL+D S
Sbjct: 251 DYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSS 310
Query: 295 AAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWT- 353
+++NK+RV TV+AHELAHQWFGNLVT+EWW LWLNEGFA++V YL AD P W +
Sbjct: 311 SSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDL 370
Query: 354 QFLDECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 410
L++ + +D LA SHP+ E+N +I E+FDAISY KGASV+RML ++L +
Sbjct: 371 MVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSED 430
Query: 411 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGE-------PVNKLMNSWTKQKGYPVIXX 463
F++ LASY+ +A N +LW L+E V +MN WT Q G+PVI
Sbjct: 431 VFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITV 490
Query: 464 XXXXXXXXXXX-----XXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKE 518
S + WIVPIT +L+ D +
Sbjct: 491 DTSTGTLSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLI----DVRAQND 546
Query: 519 LLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDD 576
L S ++ W+ LN+N TG+YRV YD++ ++ ++ + +R I++D
Sbjct: 547 LFSTSGNE------WVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIIND 600
Query: 577 HFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLITISY-KIGRIAADARPELLDYLKQ 634
F L A + +T L EE +Y + L ++SY K+ ++ + +YLK+
Sbjct: 601 AFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKK 660
Query: 635 FFISLFQNSAEKL-GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADR 693
LF + W P E+ +D + G E S F ++ +
Sbjct: 661 QVTPLFIHFRNNTNNWREIP-ENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENP 719
Query: 694 TTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNI 753
+ P++R Y ++ ++ +R L E ++ ++LA ++ I
Sbjct: 720 NNNPIHPNLRSTVYC---NAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWI 776
Query: 754 VLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITR 808
+ L++ L+ + +R QDA + + ++ G+ W +++ NW + +G G F +
Sbjct: 777 LNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSN 836
Query: 809 FISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 857
I ++ F++ +++++E+F + R L Q++E+ + N KWV+
Sbjct: 837 LIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVK 888
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 274/868 (31%), Positives = 425/868 (48%), Gaps = 118/868 (13%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTIN-----NRSVSFT---NK 68
++YD+ L D+ F G+ I D GD IVL+A L IN R +FT
Sbjct: 4 EKYDLTLDFDIQKRTFNGTETITADA-GD---IVLDAVGLQINWMKVNGRDTAFTYDGQT 59
Query: 69 VSSKQALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNG 128
V + +P K+E I F G ++D + G Y + G
Sbjct: 60 VRAPGDSQPQKIE------------------------ISFAGKVSDSLSGIYYA-----G 90
Query: 129 EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKT 188
+ M T F+ DARR FPC D PA KA F IT+ + + A+SNMP +V K
Sbjct: 91 RENGMITTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKV 149
Query: 189 VSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELY 248
V +Q++P MSTYL+ V IG F Y + D + + K + K+ L++A K++E Y
Sbjct: 150 VEFQDTPRMSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFY 206
Query: 249 KEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVV 306
+ YF +PY+LPK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ ATV+
Sbjct: 207 ENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSATVI 263
Query: 307 AHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRL 365
AHE+AHQWFG+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR
Sbjct: 264 AHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRS 323
Query: 366 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 425
D L +HPIEV+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ +
Sbjct: 324 DSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKF 383
Query: 426 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGD 485
NA+ DLW A+E+ SG+PV ++M W K GYPVI G +
Sbjct: 384 GNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-E 442
Query: 486 GQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYR 545
G+W VP+ + K D + + LL S E D G IK+N + GFYR
Sbjct: 443 GRWPVPVNI--------------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYR 485
Query: 546 VKYDK-DLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEY 604
V YD + +G+ + LS DR G++DD FA ++ + + ++ ++ ++
Sbjct: 486 VLYDDATFSDVMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDH 542
Query: 605 TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLD 659
V++ ++ ++YL+ F + A ++ + + + +L
Sbjct: 543 NVITAIVG---------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLK 586
Query: 660 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDR 719
L G + + L ++ + E SK F F + P++R + +A + D
Sbjct: 587 IAL-GRV-SRLYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDL 636
Query: 720 SGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSI 779
G LL +R D +++ RI+S+ + V + +E++ QD + + ++
Sbjct: 637 KG---LLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSAL 693
Query: 780 E---GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSR 833
E GRE ++ N D I + F R S V P + + E+ +
Sbjct: 694 ETLPGRE----FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNI 748
Query: 834 CKPYIARTLRQSIERVQINAKWVESIRN 861
I+ L + IE + +N K VE IR
Sbjct: 749 GSKNISMGLAKGIEMLAVNRKLVERIRQ 776
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 274/868 (31%), Positives = 424/868 (48%), Gaps = 118/868 (13%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTIN-----NRSVSFT---NK 68
++YD+ L D+ F G+ I D GD IVL+A L IN R +FT
Sbjct: 4 EKYDLTLDFDIQKRTFNGTETITADA-GD---IVLDAVGLQINWMKVNGRDTAFTYDGQT 59
Query: 69 VSSKQALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNG 128
V + +P K+E I F G ++D + G Y + G
Sbjct: 60 VRAPGDSQPQKIE------------------------ISFAGKVSDSLSGIYYA-----G 90
Query: 129 EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKT 188
+ M T FE DARR FPC D PA KA F IT+ + + A+SNMP +V K
Sbjct: 91 RENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKV 149
Query: 189 VSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELY 248
V +Q++P MSTYL+ V IG F Y + D + + K + K+ L++A K++E Y
Sbjct: 150 VEFQDTPRMSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFY 206
Query: 249 KEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVV 306
+ YF +PY+LPK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ A V+
Sbjct: 207 ENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSANVI 263
Query: 307 AHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRL 365
AHE+AHQWFG+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR
Sbjct: 264 AHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRS 323
Query: 366 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 425
D L +HPIEV+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ +
Sbjct: 324 DSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKF 383
Query: 426 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGD 485
NA+ DLW A+E+ SG+PV ++M W K GYPVI G +
Sbjct: 384 GNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-E 442
Query: 486 GQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYR 545
G+W VP+ + K D + + LL S E D G IK+N + GFYR
Sbjct: 443 GRWPVPVNI--------------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYR 485
Query: 546 VKYDK-DLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEY 604
V YD + +G+ + LS DR G++DD FA ++ + + ++ ++ ++
Sbjct: 486 VLYDDATFSDVMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDH 542
Query: 605 TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLD 659
V++ ++ ++YL+ F + A ++ + + + +L
Sbjct: 543 NVITAIVG---------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLK 586
Query: 660 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDR 719
L G + + L ++ + E SK F F + P++R + +A + D
Sbjct: 587 IAL-GRV-SRLYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDL 636
Query: 720 SGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSI 779
G LL +R D +++ RI+S+ + V + +E++ QD + + ++
Sbjct: 637 KG---LLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSAL 693
Query: 780 E---GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSR 833
E GRE ++ N D I + F R S V P + + E+ +
Sbjct: 694 ETLPGRE----FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNI 748
Query: 834 CKPYIARTLRQSIERVQINAKWVESIRN 861
I+ L + IE + +N K VE IR
Sbjct: 749 GSKNISMGLAKGIEMLAVNRKLVERIRQ 776
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 164/359 (45%), Gaps = 23/359 (6%)
Query: 122 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 177
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 106 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 165
Query: 178 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 231
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 166 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 225
Query: 232 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 291
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 292 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 351
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 286 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 345
Query: 352 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 410
+D L D SHPI E ++ + Y KG+ V+RM LG E
Sbjct: 346 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEE 403
Query: 411 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 461
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 404 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 460
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 164/359 (45%), Gaps = 23/359 (6%)
Query: 122 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 177
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 105 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 164
Query: 178 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 231
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 165 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 224
Query: 232 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 291
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 292 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 351
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 285 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 344
Query: 352 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 410
+D L D SHPI E ++ + Y KG+ V+RM LG E
Sbjct: 345 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEE 402
Query: 411 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 461
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 403 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 459
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 164/359 (45%), Gaps = 23/359 (6%)
Query: 122 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 177
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 106 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 165
Query: 178 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 231
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 166 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 225
Query: 232 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 291
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 292 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 351
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 286 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 345
Query: 352 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 410
+D L D SHPI E ++ + Y KG+ V+RM LG E
Sbjct: 346 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEE 403
Query: 411 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 461
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 404 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 460
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 163/359 (45%), Gaps = 23/359 (6%)
Query: 122 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 177
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 105 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 164
Query: 178 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 231
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 165 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 224
Query: 232 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 291
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 292 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 351
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 285 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 344
Query: 352 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 410
+D L D SHPI E + + Y KG+ V+RM LG E
Sbjct: 345 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMANFYTTTVYDKGSEVMRMYLTILGEE 402
Query: 411 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 461
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 403 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 459
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 201/477 (42%), Gaps = 71/477 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 17 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 74
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 75 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 119
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 120 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 177
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 178 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 233
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G MEN L T L A
Sbjct: 234 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AG 283
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKI 351
+ ++ V+AHE++H W GNLVT + W H WLNEG ++ LF E
Sbjct: 284 DKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 343
Query: 352 WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA 409
W + + + E+HP V +ID + ++ Y KG +++ L+ LG
Sbjct: 344 WGELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 397
Query: 410 -ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 398 PEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 454
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 201/477 (42%), Gaps = 71/477 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 20 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 77
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 78 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 122
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 123 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 180
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 181 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 236
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G MEN L T L A
Sbjct: 237 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AG 286
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKI 351
+ ++ V+AHE++H W GNLVT + W H WLNEG ++ LF E
Sbjct: 287 DKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 346
Query: 352 WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA 409
W + + + E+HP V +ID + ++ Y KG +++ L+ LG
Sbjct: 347 WGELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 400
Query: 410 -ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 401 PEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 201/477 (42%), Gaps = 71/477 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 25 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 82
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 83 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 127
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 128 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 185
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 186 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 241
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G MEN L T L A
Sbjct: 242 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AG 291
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKI 351
+ ++ V+AHE++H W GNLVT + W H WLNEG ++ LF E
Sbjct: 292 DKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 351
Query: 352 WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA 409
W + + + E+HP V +ID + ++ Y KG +++ L+ LG
Sbjct: 352 WGELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 405
Query: 410 -ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 406 PEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 201/477 (42%), Gaps = 71/477 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 76
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 77 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 121
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 122 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 179
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 180 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 235
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G MEN L T L A
Sbjct: 236 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AG 285
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKI 351
+ ++ V+AHE++H W GNLVT + W H WLNEG ++ LF E
Sbjct: 286 DKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 345
Query: 352 WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA 409
W + + + E+HP V +ID + ++ Y KG +++ L+ LG
Sbjct: 346 WGELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 399
Query: 410 -ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 400 PEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 201/477 (42%), Gaps = 71/477 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 76
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 77 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 121
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 122 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 179
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 180 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 235
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G MEN L T L A
Sbjct: 236 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AG 285
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKI 351
+ ++ V+AHE++H W GNLVT + W H WLNEG ++ LF E
Sbjct: 286 DKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 345
Query: 352 WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA 409
W + + + E+HP V +ID + ++ Y KG +++ L+ LG
Sbjct: 346 WGELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 399
Query: 410 -ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 400 PEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 201/477 (42%), Gaps = 71/477 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 76
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 77 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 121
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 122 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 179
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 180 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 235
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G MEN L T L A
Sbjct: 236 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AG 285
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKI 351
+ ++ V+AHE++H W GNLVT + W H WLNEG ++ LF E
Sbjct: 286 DKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 345
Query: 352 WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA 409
W + + + E+HP V +ID + ++ Y KG +++ L+ LG
Sbjct: 346 WGELQNS------VKTFGETHPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLGG 399
Query: 410 -ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 400 PEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 201/471 (42%), Gaps = 59/471 (12%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 20 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 77
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 78 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 122
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 123 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 180
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 181 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 236
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G M+N L T L A
Sbjct: 237 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMQNPCLTFVTPTLL---------AG 286
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLD 357
+ ++ V+AHE++H W GNLVT + W H WLNEG ++ LF E ++ +
Sbjct: 287 DKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 346
Query: 358 ECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQR 414
+ E+HP V +ID + ++ Y KG +++ L+ LG E F
Sbjct: 347 WGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLG 406
Query: 415 SLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 407 FLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 115/477 (24%), Positives = 201/477 (42%), Gaps = 71/477 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFTNKVS 70
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 25 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYA--LG 82
Query: 71 SKQALEPTKVELVEADEILVLEFAETLPTGMG-----VLAIGFEGVLNDKMKGF-YRSSY 124
+Q+ + + +E+ +LP + V+ I FE + K + +
Sbjct: 83 ERQSYKGSPMEI-------------SLPIALSKNQEIVIEISFET--SPKSSALQWLTPE 127
Query: 125 ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----D 179
+ +G++ +Q + R PC D P+ K T+ + VP ELVAL M I
Sbjct: 128 QTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETP 185
Query: 180 EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN 239
+ D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 186 DPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFS 241
Query: 240 VAVKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAAN 298
L++ E PY + D++ +P F G MEN L T L A
Sbjct: 242 ETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AG 291
Query: 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKI 351
+ ++ V+AH+++H W GNLVT + W H WLNEG ++ LF E
Sbjct: 292 DKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGG 351
Query: 352 WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA 409
W + + + E+HP V +ID + ++ Y KG +++ L+ LG
Sbjct: 352 WGELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 405
Query: 410 -ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 461
E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 406 PEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 148/358 (41%), Gaps = 21/358 (5%)
Query: 113 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATF--KITLDVPSELV 170
N ++G Y+S L TQ E R D P A F KI D
Sbjct: 103 NTALEGLYQSGDAL--------CTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPF 154
Query: 171 ALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVY 225
LSN V +++ V +Q+ YL A+V G FD + D + + + +Y
Sbjct: 155 LLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELY 214
Query: 226 CQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 285
G ++ +A+ +++ +E F + Y L ++A+ F GAMEN GL +
Sbjct: 215 VDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSK 274
Query: 286 ALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 345
+L + + + V+ HE H W GN VT W L L EG + + L
Sbjct: 275 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 334
Query: 346 FPEWKIWTQFLDECTEGLRL--DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRML 403
+ GL+ D +HPI ++ E++ + Y KGA VIRM+
Sbjct: 335 GSRAVNRINNV-RTMRGLQFAEDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMI 391
Query: 404 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 461
LG E FQ+ + Y +++ S A +D A+E+ S ++ W Q G P++
Sbjct: 392 HTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 448
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 148/358 (41%), Gaps = 21/358 (5%)
Query: 113 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATF--KITLDVPSELV 170
N ++G Y+S L TQ E R D P A F KI D
Sbjct: 124 NTALEGLYQSGDAL--------CTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPF 175
Query: 171 ALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVY 225
LSN V +++ V +Q+ YL A+V G FD + D + + + +Y
Sbjct: 176 LLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELY 235
Query: 226 CQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 285
G ++ +A+ +++ +E F + Y L ++A+ F GAMEN GL +
Sbjct: 236 VDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSK 295
Query: 286 ALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 345
+L + + + V+ HE H W GN VT W L L EG + + L
Sbjct: 296 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355
Query: 346 FPEWKIWTQFLDECTEGLRL--DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRML 403
+ GL+ D +HPI ++ E++ + Y KGA VIRM+
Sbjct: 356 GSRAVNRINNV-RTMRGLQFAEDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMI 412
Query: 404 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 461
LG E FQ+ + Y +++ S A +D A+E+ S ++ W Q G P++
Sbjct: 413 HTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 469
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 148/358 (41%), Gaps = 21/358 (5%)
Query: 113 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATF--KITLDVPSELV 170
N ++G Y+S L TQ + R D P A F KI D
Sbjct: 124 NTALEGLYQSGDAL--------CTQCQAEGFRHITYYLDRPDVLARFTTKIIADKIKYPF 175
Query: 171 ALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVY 225
LSN V +++ V +Q+ YL A+V G FD + D + + + +Y
Sbjct: 176 LLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELY 235
Query: 226 CQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 285
G ++ +A+ +++ +E F + Y L ++A+ F GAMEN GL +
Sbjct: 236 VDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSK 295
Query: 286 ALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 345
+L + + + V+ HE H W GN VT W L L EG + + L
Sbjct: 296 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355
Query: 346 FPEWKIWTQFLDECTEGLRL--DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRML 403
+ GL+ D +HPI ++ E++ + Y KGA VIRM+
Sbjct: 356 GSRAVNRINNV-RTMRGLQFAEDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMI 412
Query: 404 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 461
LG E FQ+ + Y +++ S A +D A+E+ S ++ W Q G P++
Sbjct: 413 HTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 469
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 131/314 (41%), Gaps = 38/314 (12%)
Query: 131 KNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVS 190
K +Q E AR FPC+D P+ K+TF +++ P +V S + + D D N+
Sbjct: 139 KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPVV-FSGIRIEDTSKDTNIYRFE 197
Query: 191 YQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELY 248
Q+ PI YL+ + G D +S I R VY + + ++ V+
Sbjct: 198 -QKVPI-PAYLIGIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQT 249
Query: 249 KEYFAVPYSLPKLD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVA 307
E Y D ++ + + G ME+ + T L +D + V+A
Sbjct: 250 AEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLLAHDRSN---------IDVIA 300
Query: 308 HELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLD 357
HELAH W GNLVT W H WLNEG+ ++ ++ E W +D
Sbjct: 301 HELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSID 360
Query: 358 ECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSL 416
+ R L ++ +N + D+ F + Y KG +++ L+ LG + F +
Sbjct: 361 SMKDPERFSTLVQN------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFI 414
Query: 417 ASYIKKYACSNAKT 430
Y KK+A + T
Sbjct: 415 RHYFKKFAKKSLDT 428
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 38/314 (12%)
Query: 131 KNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVS 190
K +Q E AR FPC+D P+ K+TF +++ P +V S + + D D N+
Sbjct: 139 KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPVV-FSGIRIEDTSKDTNIYRFE 197
Query: 191 YQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELY 248
Q+ PI YL+ + G D +S I R VY + + ++ V+
Sbjct: 198 -QKVPI-PAYLIGIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQT 249
Query: 249 KEYFAVPYSLPKLD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVA 307
E Y D ++ + + G ME+ + T + +D + V+A
Sbjct: 250 AEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLIAHDRSN---------IDVIA 300
Query: 308 HELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLD 357
HELAH W GNLVT W H WLNEG+ ++ ++ E W +D
Sbjct: 301 HELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSID 360
Query: 358 ECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSL 416
+ R L ++ +N + D+ F + Y KG +++ L+ LG + F +
Sbjct: 361 SMKDPERFSTLVQN------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFI 414
Query: 417 ASYIKKYACSNAKT 430
Y KK+A + T
Sbjct: 415 RHYFKKFAKKSLDT 428
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 106/453 (23%), Positives = 183/453 (40%), Gaps = 42/453 (9%)
Query: 21 IRLTPDLTSCKFGGSVAIDVDVVGDTKF-IVLNAADLTINNRSVSFTNKVSSKQALEPTK 79
+ L D G + +D D K ++L+ DL I+ K S Q ++
Sbjct: 33 LDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHR----VMAKNSQGQWVK-VN 87
Query: 80 VELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGF-YRSSYELNGEKKNMAVTQF 138
+L + D++L + P + + + +K G + S+ + G++K +Q
Sbjct: 88 YDLAKRDDVLGSKLTINTPLNAKKVRVYYNST--EKATGLQWLSAEQTAGKEKPFLFSQN 145
Query: 139 EPADARRCFPCWDEPACKATFKITLDVPSELVAL---SNMPVIDEKVDGNMKTVSYQESP 195
+ AR P D P+ + T+ + +L+A+ +N P + DG+ Q P
Sbjct: 146 QAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGTER--DGDYFFSMPQAIP 203
Query: 196 IMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVP 255
YL+A+ +G ++ GI Y + + K ++Y +Y
Sbjct: 204 ---PYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYGKYRWGR 260
Query: 256 YSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 315
Y L ++ P F G MEN L T + A + + ++AHELAH W
Sbjct: 261 YDL----LMLPPSFPFGGMENPRLSFITPTVV---------AGDKSLVNLIAHELAHSWS 307
Query: 316 GNLVTMEWWTHLWLNEGFATWVSYLAADSLF-PEWKIWTQFL---DECTEGLRLDGLAES 371
GNLVT E W LWLNEGF ++V +++F + + Q L D E L LD
Sbjct: 308 GNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDASDTQ 367
Query: 372 HPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTE 431
I+++ + D+ F + Y KG + L+ G E F + Y +A + T+
Sbjct: 368 LYIDLK---GRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTD 424
Query: 432 DLWAALEEGSGEPVNKL-----MNSWTKQKGYP 459
+ L+ + + +N W + G P
Sbjct: 425 NFVKYLKANLTDKYPNIVSDNEINEWIFKAGLP 457
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 148/365 (40%), Gaps = 35/365 (9%)
Query: 113 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITL--DVPSELV 170
N + G Y S L TQ EP R+ D P + F T+ D V
Sbjct: 99 NKSLXGLYASGGNL--------FTQCEPEGFRKITFYIDRPDVXSKFTTTIVADKKRYPV 150
Query: 171 ALSNMPVID--EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--TSDGIKVRVYC 226
LSN ID E DG V +++ +YL A+V G ED+ T G V++
Sbjct: 151 LLSNGNKIDGGEFSDGR-HWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTXSGRNVKIEF 209
Query: 227 QVGKANQGKFALNV-AVKTLELYKE-YFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRE 284
+A++ K V ++K + E F + Y L ++A+ DF GA EN GL +
Sbjct: 210 YTTEADKPKVGFAVESLKNAXKWDETRFGLEYDLDIFXVVAVGDFNXGAXENKGLNIFNT 269
Query: 285 TALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 344
+L D + + + + + +VV HE H W GN VT W L L EG + D
Sbjct: 270 KFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF-----RDQ 324
Query: 345 LFPEWKIWTQFLDECTEGLRL--------DGLAESHPIEVEVNHTGEIDEIFDAISYRKG 396
F + E +RL D +HP+ E + + Y KG
Sbjct: 325 EFSGDRASRAV--RRIENIRLLRQHQFPEDAGPTAHPVRPASYE--EXNNFYTXTVYEKG 380
Query: 397 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQK 456
A V+R LG E FQ+ Y +++ +D AA + +G +++ W Q
Sbjct: 381 AEVVRXYHTLLGEEGFQKGXKLYFQRHDGQAVTCDDFRAAXADANGINLDQFA-LWYSQA 439
Query: 457 GYPVI 461
G PV+
Sbjct: 440 GTPVL 444
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 46/396 (11%)
Query: 481 GSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 539
G+P G W VP+T D+ FLL K+D + E + WIK NV
Sbjct: 27 GAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVE-----------WIKFNVG 75
Query: 540 QTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMAS 597
G+Y V Y+ D L ++ +S DR ++++ F L + ++ L L
Sbjct: 76 MNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLY 135
Query: 598 YSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKP 653
ETE + L+ LI + YK+ + E+ K F I L ++ +K W +
Sbjct: 136 LKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG 192
Query: 654 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK 713
S + +LR ++ + ++ + A F + LP D+ A +
Sbjct: 193 SVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFA----- 245
Query: 714 VSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-----SSEVRS 768
V A G++ L Y+ + S EK++I A C N E L +LL ++++
Sbjct: 246 VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQNK--EKLQWLLDESFKGDKIKT 301
Query: 769 QDAVYGLAVSIEGRE-----TAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 822
Q+ + +++ GR AW++L+ NW+ + + + G I + + F++ +
Sbjct: 302 QE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTR 359
Query: 823 VREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 857
+ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 360 LEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 395
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 729 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 782
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 118 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGE 177
Query: 783 ETAW 786
+ AW
Sbjct: 178 QQAW 181
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 729 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 782
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 107 YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166
Query: 783 ETAW 786
+ AW
Sbjct: 167 QQAW 170
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 729 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 782
Y E D S +IL ++ C + +V L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGD 159
Query: 783 ETAW 786
+ AW
Sbjct: 160 QQAW 163
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 729 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 782
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 783 ETAW 786
+ AW
Sbjct: 160 QQAW 163
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 729 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 782
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 783 ETAW 786
+ AW
Sbjct: 160 QQAW 163
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
Length = 201
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 214 DHTSDGIKVRVYCQVGKANQGKFALNVAV--KTLELYKEYFAVPYSLPKLDMIAIPDFAA 271
+ SD IKVRV+ V N+ LN+A+ L+++ K D+I + +
Sbjct: 23 NQNSDKIKVRVHQMVNHINEMYRPLNIAISLNRLQIWS----------KKDLITVKSASN 72
Query: 272 GAMENYGLVTYRETALLYDDQHSAA 296
+E++G +RET LL + A
Sbjct: 73 VTLESFG--NWRETVLLKQQNNDCA 95
>pdb|3SK1|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|C Chain C, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|D Chain D, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK2|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
pdb|3SK2|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
Length = 132
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 441 SGEPVNKLMNSWTKQKGYPVI 461
+GE V+KL N WTKQK + +I
Sbjct: 82 TGEDVDKLFNEWTKQKSHQII 102
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 340 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 393
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 236 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 289
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 340 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 393
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 235 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 288
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 766 VRSQDAVYGLAVSIEGR------ETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFAS 819
+R Q+ + G +++ E R E + KWL+D D ++K G F I+ S
Sbjct: 66 IRDQELIVG-SLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISE---------ES 115
Query: 820 YEKVREVEEFFSSRCKPYIARTLRQSIERVQIN 852
EK+++V E+++ + +A + R +N
Sbjct: 116 KEKLKDVFEYWNGKTTSELATSYMTEETREAVN 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,177,992
Number of Sequences: 62578
Number of extensions: 1024934
Number of successful extensions: 2650
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2489
Number of HSP's gapped (non-prelim): 53
length of query: 877
length of database: 14,973,337
effective HSP length: 107
effective length of query: 770
effective length of database: 8,277,491
effective search space: 6373668070
effective search space used: 6373668070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)