Query 002812
Match_columns 877
No_of_seqs 340 out of 2406
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 11:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 1E-151 3E-156 1359.3 84.0 844 5-873 26-881 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 9E-125 2E-129 1131.2 84.9 795 13-857 13-830 (831)
3 COG0308 PepN Aminopeptidase N 100.0 4.1E-92 8.8E-97 846.4 68.3 819 8-859 11-856 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 1.4E-83 3E-88 760.9 72.9 708 11-762 4-764 (863)
5 PRK14015 pepN aminopeptidase N 100.0 7.1E-82 1.5E-86 748.9 77.0 707 11-761 16-773 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 2.2E-75 4.8E-80 674.9 41.7 426 10-466 7-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 8.9E-74 1.9E-78 644.9 38.5 385 9-396 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 1.3E-53 2.7E-58 452.8 27.9 432 11-464 13-460 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 7.3E-51 1.6E-55 446.9 29.2 313 533-850 1-324 (324)
10 KOG1932 TATA binding protein a 100.0 7.7E-35 1.7E-39 331.2 36.5 429 16-466 27-506 (1180)
11 COG3975 Predicted protease wit 99.2 1E-09 2.2E-14 118.8 19.8 300 159-476 115-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 6.3E-11 1.4E-15 110.7 7.3 107 299-419 22-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.5 0.0054 1.2E-07 66.2 18.3 143 299-456 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 96.8 0.00067 1.5E-08 61.3 2.5 43 302-344 4-57 (122)
15 PF11940 DUF3458: Domain of un 96.2 0.72 1.6E-05 50.7 21.6 303 469-803 6-344 (367)
16 PF07607 DUF1570: Protein of u 95.7 0.0066 1.4E-07 55.5 2.4 39 304-342 3-43 (128)
17 PF04450 BSP: Peptidase of pla 95.4 0.29 6.3E-06 49.1 13.1 170 238-451 27-204 (205)
18 PF10026 DUF2268: Predicted Zn 92.6 0.43 9.3E-06 47.8 7.9 99 241-346 5-113 (195)
19 smart00638 LPD_N Lipoprotein N 90.7 4.4 9.6E-05 48.2 15.1 198 550-764 356-560 (574)
20 PRK04860 hypothetical protein; 87.0 1.2 2.6E-05 42.7 5.4 70 237-315 5-76 (160)
21 PF01863 DUF45: Protein of unk 82.1 8.1 0.00017 38.9 9.4 94 235-355 108-201 (205)
22 PF10023 DUF2265: Predicted am 80.4 1.9 4E-05 46.3 4.1 40 300-345 163-202 (337)
23 COG4324 Predicted aminopeptida 79.9 1.9 4.2E-05 43.5 3.7 40 300-345 195-234 (376)
24 smart00731 SprT SprT homologue 79.8 2.3 5E-05 40.4 4.1 65 243-316 5-73 (146)
25 PF01347 Vitellogenin_N: Lipop 78.4 21 0.00046 42.9 12.9 197 550-763 394-603 (618)
26 PF12725 DUF3810: Protein of u 70.0 4.9 0.00011 43.6 4.0 31 302-344 196-226 (318)
27 PF03272 Enhancin: Viral enhan 69.2 2.8E+02 0.0062 34.1 19.0 129 304-452 238-377 (775)
28 PF13646 HEAT_2: HEAT repeats; 63.9 12 0.00026 31.5 4.5 75 660-746 14-88 (88)
29 PF12315 DUF3633: Protein of u 61.8 13 0.00028 36.9 4.7 41 302-344 93-133 (212)
30 PF01447 Peptidase_M4: Thermol 61.6 15 0.00032 35.0 5.0 74 232-313 67-146 (150)
31 PF04234 CopC: CopC domain; I 55.8 57 0.0012 28.3 7.4 62 45-110 18-82 (97)
32 PF10989 DUF2808: Protein of u 54.0 39 0.00084 32.0 6.5 48 74-122 76-123 (146)
33 PF06114 DUF955: Domain of unk 53.6 13 0.00029 33.3 3.3 19 301-319 41-59 (122)
34 COG4783 Putative Zn-dependent 52.6 17 0.00037 40.7 4.3 53 257-314 90-142 (484)
35 PRK04351 hypothetical protein; 51.8 17 0.00037 34.5 3.7 59 246-314 12-73 (149)
36 PF10263 SprT-like: SprT-like 51.7 29 0.00064 33.1 5.5 19 298-316 56-74 (157)
37 COG1451 Predicted metal-depend 49.6 94 0.002 31.8 8.9 93 235-354 119-211 (223)
38 PF01435 Peptidase_M48: Peptid 48.5 26 0.00057 35.6 4.9 69 244-321 36-108 (226)
39 COG0362 Gnd 6-phosphogluconate 48.3 1.1E+02 0.0023 33.9 9.2 118 567-705 312-444 (473)
40 PRK05457 heat shock protein Ht 46.0 33 0.00071 36.6 5.2 68 241-317 79-149 (284)
41 cd04269 ZnMc_adamalysin_II_lik 45.3 70 0.0015 31.8 7.3 14 301-314 130-143 (194)
42 PF14675 FANCI_S1: FANCI solen 42.8 73 0.0016 32.5 6.8 119 569-689 4-123 (223)
43 COG0501 HtpX Zn-dependent prot 42.8 42 0.00091 36.0 5.6 65 248-320 108-175 (302)
44 COG2719 SpoVR Uncharacterized 42.8 1.5E+02 0.0033 32.9 9.4 51 304-360 251-301 (495)
45 KOG1991 Nuclear transport rece 41.7 3.8E+02 0.0082 33.3 13.2 137 566-704 102-252 (1010)
46 PF08325 WLM: WLM domain; Int 41.5 90 0.002 30.9 7.1 23 296-318 76-98 (186)
47 PRK02870 heat shock protein Ht 40.7 55 0.0012 35.8 5.9 64 242-313 118-184 (336)
48 COG3227 LasB Zinc metalloprote 40.4 30 0.00065 38.7 3.8 110 228-344 265-380 (507)
49 PRK04897 heat shock protein Ht 39.6 40 0.00086 36.3 4.7 68 241-317 82-152 (298)
50 PRK03982 heat shock protein Ht 38.9 69 0.0015 34.2 6.4 66 241-317 70-140 (288)
51 COG2372 CopC Uncharacterized p 38.7 87 0.0019 28.6 5.8 60 47-110 47-110 (127)
52 PF13699 DUF4157: Domain of un 38.3 52 0.0011 27.5 4.1 63 244-314 6-73 (79)
53 PRK03072 heat shock protein Ht 38.2 62 0.0013 34.6 5.8 69 240-317 71-142 (288)
54 PF01431 Peptidase_M13: Peptid 38.1 43 0.00092 33.7 4.4 33 288-320 22-54 (206)
55 PF08014 DUF1704: Domain of un 37.9 1.7E+02 0.0036 32.2 9.2 81 246-341 120-213 (349)
56 PRK01345 heat shock protein Ht 37.3 71 0.0015 34.7 6.2 68 241-317 69-139 (317)
57 PRK02391 heat shock protein Ht 35.3 65 0.0014 34.6 5.4 68 241-317 78-148 (296)
58 PF13574 Reprolysin_2: Metallo 34.9 25 0.00054 34.4 2.0 13 302-314 111-123 (173)
59 PHA02456 zinc metallopeptidase 34.1 25 0.00054 30.7 1.6 14 301-314 78-91 (141)
60 PRK03001 M48 family peptidase; 34.0 70 0.0015 34.1 5.4 68 241-317 69-139 (283)
61 PRK10301 hypothetical protein; 33.1 2.3E+02 0.005 25.9 7.9 26 85-110 84-109 (124)
62 PRK09687 putative lyase; Provi 31.9 6.4E+02 0.014 26.7 15.6 90 661-761 143-232 (280)
63 PF10805 DUF2730: Protein of u 30.3 1.8E+02 0.0039 25.8 6.5 42 785-828 1-42 (106)
64 PRK01265 heat shock protein Ht 30.1 94 0.002 33.7 5.6 66 242-316 86-154 (324)
65 cd04279 ZnMc_MMP_like_1 Zinc-d 29.8 1.9E+02 0.0041 27.5 7.3 36 220-255 2-40 (156)
66 PF12174 RST: RCD1-SRO-TAF4 (R 27.9 1.2E+02 0.0026 24.7 4.5 47 396-443 11-57 (70)
67 KOG2661 Peptidase family M48 [ 27.8 40 0.00087 35.8 2.2 21 298-318 271-291 (424)
68 COG3091 SprT Zn-dependent meta 27.5 82 0.0018 29.6 3.9 65 241-312 7-71 (156)
69 PF04597 Ribophorin_I: Ribopho 27.3 4.6E+02 0.01 29.9 10.8 87 24-110 10-103 (432)
70 cd04272 ZnMc_salivary_gland_MP 27.3 1.4E+02 0.003 30.5 6.1 13 302-314 145-157 (220)
71 PF01421 Reprolysin: Reprolysi 26.9 75 0.0016 31.7 4.0 14 300-313 129-142 (199)
72 PF14524 Wzt_C: Wzt C-terminal 26.3 1.3E+02 0.0027 27.7 5.3 25 84-108 83-107 (142)
73 KOG2062 26S proteasome regulat 26.1 1.5E+02 0.0031 35.4 6.3 102 654-763 494-599 (929)
74 PF13205 Big_5: Bacterial Ig-l 25.4 4.4E+02 0.0095 22.7 8.4 26 84-109 59-85 (107)
75 KOG1967 DNA repair/transcripti 24.3 1.5E+03 0.032 28.4 16.5 197 574-802 106-308 (1030)
76 PF12069 DUF3549: Protein of u 23.0 3.6E+02 0.0078 29.4 8.3 89 665-764 171-259 (340)
77 PF13402 M60-like: Peptidase M 22.9 1.4E+02 0.0031 32.0 5.5 107 233-347 144-259 (307)
78 PF03715 Noc2: Noc2p family; 22.9 1.8E+02 0.0039 31.3 6.1 49 824-872 228-284 (299)
79 COG2856 Predicted Zn peptidase 22.7 2.8E+02 0.0062 28.1 7.1 40 301-340 71-115 (213)
80 PF13646 HEAT_2: HEAT repeats; 22.2 90 0.002 25.9 3.1 62 699-764 13-74 (88)
81 PF09768 Peptidase_M76: Peptid 22.2 3.2E+02 0.0068 26.7 7.0 26 298-323 67-92 (173)
82 KOG3607 Meltrins, fertilins an 22.0 2E+02 0.0044 34.9 6.9 81 221-313 242-334 (716)
83 PF09836 DUF2063: Uncharacteri 20.9 56 0.0012 28.2 1.5 30 403-432 55-84 (94)
84 cd00244 AlgLyase Alginate Lyas 20.6 1.1E+03 0.024 25.6 11.3 77 626-704 148-227 (339)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-151 Score=1359.30 Aligned_cols=844 Identities=47% Similarity=0.777 Sum_probs=777.6
Q ss_pred CCCCcCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCcCCcccccceeEEEec
Q 002812 5 KGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKQALEPTKVELVE 84 (877)
Q Consensus 5 ~~~~rLp~~~~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~ 84 (877)
...+|||.+++|+||+|+|.+++....|.|++.|.+.+.++|+.|+||+.++.|.++.+....+... ........+.
T Consensus 26 ~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~---~~~~~~~~~~ 102 (882)
T KOG1046|consen 26 PNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGS---VQLEVSVEEK 102 (882)
T ss_pred cccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCc---cccccccccc
Confidence 3678999999999999999999999999999999999999999999999999999999965322111 0111100111
Q ss_pred C-CeEEEEEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeeecc-CCeeeeeeeeccCCCCCCceeeccCCCCCceEEEE
Q 002812 85 A-DEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 161 (877)
Q Consensus 85 ~-~~~l~i~l~~~l~~g-~~~l~i~y~g~l~~~~~G~y~~~y~~-~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~ka~f~l 161 (877)
. .+.+.+.+++++.+| .|+|+|.|.|.+++.+.|||+++|.+ ++.++++++|||||++||++|||||||++||+|+|
T Consensus 103 ~~~~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I 182 (882)
T KOG1046|consen 103 EQEETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI 182 (882)
T ss_pred ccceEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence 1 167888999999999 89999999999999999999999987 46669999999999999999999999999999999
Q ss_pred EEEeCCCCeEEcCCcccce-eecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecccCCCeEEEEEEcCCccchHHHHHHH
Q 002812 162 TLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNV 240 (877)
Q Consensus 162 ~i~~p~~~~~~sn~~~~~~-~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~ 240 (877)
+|.||++++|+||||+..+ ..++++++++|++||+||||++||+||+|++.+..+.+|+++++|++|+...+++++++.
T Consensus 183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~ 262 (882)
T KOG1046|consen 183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV 262 (882)
T ss_pred EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence 9999999999999999876 445559999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccc
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 320 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 320 (877)
+.++|++|+++||+|||+||+|+|++|+|..|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+||
T Consensus 263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT 342 (882)
T KOG1046|consen 263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT 342 (882)
T ss_pred HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HHhhhcccCCCCceeeecCCcchhhccccccccchhhHH
Q 002812 321 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 399 (877)
Q Consensus 321 ~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~v 399 (877)
|+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|++.++||+..++.++.+|.+.||.++|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999887777 579999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCCEEEEEEEeecc
Q 002812 400 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 479 (877)
Q Consensus 400 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~l~Q~rf~~ 479 (877)
||||+.++|++.|++||+.||.+|+|+|++++|||++|+...+.|++++|+.|+.|+|||+|+|.+++++++++|+||..
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CCC--CCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcCHHHHHHHH
Q 002812 480 SGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLG 557 (877)
Q Consensus 480 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~ 557 (877)
... .....|+||++|.+...+.....++..++..+.++. .+ +||++|.++.|||||+||+++|+.|+
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~ 571 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLI 571 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHH
Confidence 754 334599999999887655445677877777777754 33 69999999999999999999999999
Q ss_pred HHHHc-cCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Q 002812 558 YAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFF 636 (877)
Q Consensus 558 ~~l~~-~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 636 (877)
.+|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..++..|..+.. +.. .+.+..++.|+
T Consensus 572 ~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~ 648 (882)
T KOG1046|consen 572 EQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFV 648 (882)
T ss_pred HHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHH
Confidence 99976 789999999999999999999999999999999999999999999999999998888 444 45889999999
Q ss_pred HHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeeccc
Q 002812 637 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSA 716 (877)
Q Consensus 637 ~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~ 716 (877)
++++.++++++||.....++ ....+|..++..||..|+++|.+.|.++|.+|+.. ++++|+++|.+|||++++ +
T Consensus 649 ~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~~---~ 722 (882)
T KOG1046|consen 649 KKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAVQ---F 722 (882)
T ss_pred HHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHHH---h
Confidence 99999999999998855443 78899999999999999999999999999999987 778999999988887655 8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-CcCCcccceeeee-eccc--cHHHHHHHHHHH
Q 002812 717 SDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKWLKDN 792 (877)
Q Consensus 717 g~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~-~~i~~qd~~~~~~-v~~~--g~~~~~~fl~~n 792 (877)
|+++.|++++++|+++....||..++.||+|+++++.++++|++.++ ..++.||...++. ++.| |..+||+|+..|
T Consensus 723 g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n 802 (882)
T KOG1046|consen 723 GTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDN 802 (882)
T ss_pred cCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999888 4699999999988 7776 999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHh
Q 002812 793 WDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKEL 872 (877)
Q Consensus 793 ~~~i~~~~~~~~~l~~~v~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~~ 872 (877)
|+.+.++|++.+.+..++..++..+.++.+++++++||...+.....+++++++|.++.|+.|.+++.+. +.+||.+.
T Consensus 803 ~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~--l~~~l~~~ 880 (882)
T KOG1046|consen 803 WKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEEN--LTQWLLEA 880 (882)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHH--HHHHHHHh
Confidence 9999999996688999999999999999999999999999876666899999999999999999999988 99999875
Q ss_pred h
Q 002812 873 A 873 (877)
Q Consensus 873 ~ 873 (877)
.
T Consensus 881 ~ 881 (882)
T KOG1046|consen 881 L 881 (882)
T ss_pred c
Confidence 3
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=9e-125 Score=1131.15 Aligned_cols=795 Identities=23% Similarity=0.323 Sum_probs=666.0
Q ss_pred CceeeEEEEEEEecCCCC--eEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCcCCcccccceeEEEecCCeEEE
Q 002812 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKQALEPTKVELVEADEILV 90 (877)
Q Consensus 13 ~~~p~~Y~l~l~~~~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (877)
.+.+.||+|.|+++.+.. .+.|+++|++++.++++.|.||+.+++|++|.+++. .......++ ..
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~-----------~~~~~~~~~--~~ 79 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI-----------LDVAPVYDG--SR 79 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc-----------ccCccccCC--CE
Confidence 467999999999976544 558999999999898999999999999999998531 111122222 34
Q ss_pred EEeCCCcCCceEEEEEEEEeeecCCCcceEEeeeccCCeeeeeeeeccCCCCCCceeeccCCCCCceEEEEEEEeCCCCe
Q 002812 91 LEFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELV 170 (877)
Q Consensus 91 i~l~~~l~~g~~~l~i~y~g~l~~~~~G~y~~~y~~~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~ka~f~l~i~~p~~~~ 170 (877)
|.++. |.+|.++|+|.|++.+++.+.|+|+..+..+| +++++|||||.+||+||||||||++||+|+++|++|++|+
T Consensus 80 i~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~ 156 (831)
T TIGR02412 80 IPLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDG--EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWT 156 (831)
T ss_pred EEccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCC--eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCce
Confidence 66655 77788999999999999999999996554445 3788999999999999999999999999999999999999
Q ss_pred EEcCCcccceeecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecccCCCeEEEEEEcCCccch--HHHHHHHHHHHHHHH
Q 002812 171 ALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELY 248 (877)
Q Consensus 171 ~~sn~~~~~~~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~ 248 (877)
|+|||++.+....++.++++|++|||||+|++||++|+|+.++. ..+|+++++|++|+..+. ++++++.+.++|++|
T Consensus 157 v~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~ 235 (831)
T TIGR02412 157 VISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFF 235 (831)
T ss_pred EECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHH
Confidence 99999987765556678899999999999999999999999874 456899999999997654 678999999999999
Q ss_pred HHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccCcCchhh
Q 002812 249 KEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLW 328 (877)
Q Consensus 249 e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~W 328 (877)
+++||+|||++|+|+|++|+|..|||||||+|+|+|. +++.+. .+...++.++.+|+||+|||||||+|||+||+|+|
T Consensus 236 e~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlW 313 (831)
T TIGR02412 236 HRKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLW 313 (831)
T ss_pred HHHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchh
Confidence 9999999999999999999999999999999999999 555544 34556778899999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HHhhhcccCCCCceeeecCCcchhhccccccccchhhHHHHHHHHhh
Q 002812 329 LNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 407 (877)
Q Consensus 329 L~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~l 407 (877)
||||||+|++++++++.+|++..+..|..... .++..|+..++||+..++.++.++...|+.++|.||++|||||+..|
T Consensus 314 LnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~l 393 (831)
T TIGR02412 314 LNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWV 393 (831)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 99999999999999999999998888876554 66888999999999999989989999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC--CEEE-EEEEeeccCCCCC
Q 002812 408 GAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE--EKLE-LEQSQFLSSGSPG 484 (877)
Q Consensus 408 G~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~--~~~~-l~Q~rf~~~~~~~ 484 (877)
|++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+|+|+++. +.+. +.|.+ ++ .
T Consensus 394 Gee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~ 468 (831)
T TIGR02412 394 GEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--P 468 (831)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--C
Confidence 999999999999999999999999999999999999999999999999999999998753 4444 22221 11 1
Q ss_pred CCeeEEEEEEEECccccee-----eEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcCHHHHHHHHHH
Q 002812 485 DGQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYA 559 (877)
Q Consensus 485 ~~~w~iPl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~ 559 (877)
...|.|||.+....+.... .+++...... ++... ...+. +||++|.++.|||||+||+++|+.|.++
T Consensus 469 ~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~ 540 (831)
T TIGR02412 469 PRPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAA 540 (831)
T ss_pred CCCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHH
Confidence 2469999998654332111 1333332221 22110 01233 7999999999999999999999999999
Q ss_pred HHccCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HhccCCCcHHHHHHHHHHHH-HHHHHHhccChhHHHHHHHHHH
Q 002812 560 IEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFI 637 (877)
Q Consensus 560 l~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~ 637 (877)
|.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+...+.. ++.+..+++++.
T Consensus 541 l~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~ 617 (831)
T TIGR02412 541 LSK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAA 617 (831)
T ss_pred hhh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 852 33799999999999999999999999999955 89999999999999999999 88888754 457788999998
Q ss_pred HHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccC
Q 002812 638 SLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSAS 717 (877)
Q Consensus 638 ~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g 717 (877)
+++.+.... ++++.+..++. +..++|..|+++|++.++++|+.++.+ ..||||+|..|||++++ +
T Consensus 618 ~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~ 682 (831)
T TIGR02412 618 LACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA----L 682 (831)
T ss_pred HHHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh----c
Confidence 888864422 23323333333 555799999999999999999998754 36999999999986543 5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCCcccceeeee-eccc-cHHHHHHHHHHHHH
Q 002812 718 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWLKDNWD 794 (877)
Q Consensus 718 ~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~ 794 (877)
+..+|+.++++|++++++.+|..++.||||++|++++++.+..++.+ .++.||...++. ++.. +++++|+|+++||+
T Consensus 683 ~~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (831)
T TIGR02412 683 GFIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFA 762 (831)
T ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999766666665 489999988888 7655 99999999999999
Q ss_pred HHHHHhCC-CcchHHHHHHhhc--cCCCHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHHHHHHH
Q 002812 795 HISKTWGS-GFLITRFISSIVS--PFASYEKVREVEEFFSS--RCKPYIARTLRQSIERVQINAKWVE 857 (877)
Q Consensus 795 ~i~~~~~~-~~~l~~~v~~~~~--~~~t~~~~~~~~~f~~~--~~~~~~~~~~~~~le~i~~ni~W~~ 857 (877)
.|.++++. +..+.+.+...+. .+++++.++++++||+. +..++.+|.+.++++.++.|+++.+
T Consensus 763 ~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 763 NLADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 99999975 4455555544443 88999999999999974 3345889999999999999998864
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-92 Score=846.42 Aligned_cols=819 Identities=30% Similarity=0.462 Sum_probs=657.6
Q ss_pred CcCCCCcee-eE--EEEEEEecCC--CCeEEEEEEEEEEE--ECCCCEEEEEeCCceeeEEEEeeccCcCCcccccceeE
Q 002812 8 PRLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKQALEPTKV 80 (877)
Q Consensus 8 ~rLp~~~~p-~~--Y~l~l~~~~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~ 80 (877)
..++..+.| .+ |++.|+++.. +..|+|+++|++.. ..+...|+||+.+|+|.++.+++... .. .+
T Consensus 11 ~~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~-------~~-~~ 82 (859)
T COG0308 11 AALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL-------TA-WY 82 (859)
T ss_pred ccccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc-------cc-cc
Confidence 345555666 77 7777766554 48999999999987 33344499999999999999975311 11 23
Q ss_pred EEecCCeEEEEEeCCCc---CCceEEEEEEEEeeec-CCCcceEEeeeccCCeeeeeeeeccCCCCCCceeeccCCCCCc
Q 002812 81 ELVEADEILVLEFAETL---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 156 (877)
Q Consensus 81 ~~~~~~~~l~i~l~~~l---~~g~~~l~i~y~g~l~-~~~~G~y~~~y~~~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~k 156 (877)
.++.+...+......|. .++...+.+.+++... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 83 RLDGDALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cccCccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33333322322222222 2346778888888776 6788999887643 67889999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEEcCCcccceee-cCCeEEEEEEeCCCCcceEEEEEEeeeeeeecccC---CCeEEEEEEcCCccc
Q 002812 157 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 232 (877)
Q Consensus 157 a~f~l~i~~p~~~~~~sn~~~~~~~~-~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 232 (877)
|+|+++|+.++++.++|||+.+.... .+++++++|..++||||||+|+++|+|++++.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999987644 35589999999999999999999999988775442 479999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHH
Q 002812 233 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 312 (877)
Q Consensus 233 ~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 312 (877)
.++++++.+.+++++|+++||+|||+++ ++|++|+|+.|||||||+++|++..+|.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998878888889999999999999
Q ss_pred HHhcCccccCcCchhhHhhHHHHHHHHHHHhhhCc-chhhHHHHHHHHHH-HhhhcccCCCCceeeecCCcchhhccccc
Q 002812 313 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 390 (877)
Q Consensus 313 qWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~~~~~~~~~~f~~ 390 (877)
|||||+||++||+++|||||||+|+++.+.+.++| .|..++.+...... ++..|+...+||+...+.+|.++++.||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888888776664 78889999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCC-E
Q 002812 391 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 469 (877)
Q Consensus 391 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~-~ 469 (877)
++|.||++|+|||+.++|++.|++||+.|+++|++++++++|||+++++++|+|++.+|..|++|+|+|++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEeeccCCCCCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcC
Q 002812 470 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 549 (877)
Q Consensus 470 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd 549 (877)
++++|.||...+......|.||+.+.....+......+.....++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998877344559999999988754422333445555556554321 0111 368999999999999999
Q ss_pred HHHHHHHHHHHHccCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHH-H-HHHHHHHHHHHhccChh
Q 002812 550 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSN-L-ITISYKIGRIAADARPE 627 (877)
Q Consensus 550 ~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~-~-~~~l~~l~~~~~~~~~~ 627 (877)
.+.|..++.... .++..+|+.++.|..++..+|..+...++..+.-...+.....+.. + .+.+..+..... .+
T Consensus 551 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 625 (859)
T COG0308 551 DQSLSKLLQHDP--RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFAD---LE 625 (859)
T ss_pred HHHHHHHHhhhh--hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchh---hh
Confidence 999988876633 7889999999999999999999999999987766554444444433 3 333333332211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhh
Q 002812 628 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 707 (877)
Q Consensus 628 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy 707 (877)
..+.......+...+.++++....++. ........+ +.++...+..+.+.+..+|..+-.. ...+++++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDL-LALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchH-HHHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 345566677777777777766543322 222222222 6777888899999999999888543 3457899998766
Q ss_pred eeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCCcccceeeee-ecc--ccHH
Q 002812 708 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSI--EGRE 783 (877)
Q Consensus 708 ~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-v~~--~g~~ 783 (877)
..+..+ .+..+.+..+.+.|..++....+..+..+.+....+..+.+.|..+..+ .+..|++..... ... ++++
T Consensus 700 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (859)
T COG0308 700 KAYAAA--GNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNE 777 (859)
T ss_pred HHHHHh--cChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchh
Confidence 555432 3334468899999998888889999999999999999999999988776 578888877776 332 3999
Q ss_pred HHHHHHHHHHH---HHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 002812 784 TAWKWLKDNWD---HISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESI 859 (877)
Q Consensus 784 ~~~~fl~~n~~---~i~~~~~~~~~l~~~v~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~ 859 (877)
++|.|...||+ .+..+.|++......+-.....++....+.+++.|++....+...+.+.+++++|....++.+..
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~l~~~~ 856 (859)
T COG0308 778 ARWLYGTFAFENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKLKALERLIREALETIAARERLSKDL 856 (859)
T ss_pred hHHHHHHHhhhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999998 55666665533223233334677888899999999998665678889999999999998887654
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.4e-83 Score=760.93 Aligned_cols=708 Identities=21% Similarity=0.266 Sum_probs=504.1
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCcCCcccccceeEEEecCCeEEE
Q 002812 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKQALEPTKVELVEADEILV 90 (877)
Q Consensus 11 p~~~~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (877)
|..+...||+|.++++++...++|+++|+++..++...|+||+.+|+|.+|.+++. .+. ...+..+++.++
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~-------~~~--~~~~~~~~~~L~ 74 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK-------PLA--AGDYQLDDETLT 74 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE-------ecC--cceEEEcCCEEE
Confidence 55688999999999999999999999999998777788999999999999998531 111 123555567788
Q ss_pred EEeCCCcCCceEEEEEEEEeee--cCCCcceEEeeeccCCeeeeeeeeccCCCCCCceeeccCCCCCceEEEEEEEeCCC
Q 002812 91 LEFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 168 (877)
Q Consensus 91 i~l~~~l~~g~~~l~i~y~g~l--~~~~~G~y~~~y~~~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~ka~f~l~i~~p~~ 168 (877)
|.. + ++.++|+|.|.+.. +..+.|+|++.| +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 75 I~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~ 142 (863)
T TIGR02414 75 IAS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKK 142 (863)
T ss_pred Eee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCC
Confidence 873 2 36799999997644 456789999753 578999999999999999999999999999999996
Q ss_pred -C-eEEcCCcccce-eecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecc----cCCCeEEEEEEcCCccchHHHHHHHH
Q 002812 169 -L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVA 241 (877)
Q Consensus 169 -~-~~~sn~~~~~~-~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~ 241 (877)
| +++|||+++.. ...+++++++|+.++|||+||+||+||+|++++.. ...++++++|++|+..+.++++++.+
T Consensus 143 ~y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~ 222 (863)
T TIGR02414 143 KYPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESL 222 (863)
T ss_pred cceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHH
Confidence 7 56899987765 44577889999999999999999999999988642 23458999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCcccc
Q 002812 242 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 321 (877)
Q Consensus 242 ~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 321 (877)
+++|++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+...++.+..+||||+|||||||+||+
T Consensus 223 ~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~ 302 (863)
T TIGR02414 223 KKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 302 (863)
T ss_pred HHHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeee
Confidence 99999999999999999999999999999999999999999999999998876666777899999999999999999999
Q ss_pred CcCchhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HHhhhcccCCCCceeeecCCcchhhccccccccchhhHHH
Q 002812 322 EWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 400 (877)
Q Consensus 322 ~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl 400 (877)
+||+++|||||||+|++..+.....+............. .++..|+...+||+.. .+..+++..|+.++|.||++||
T Consensus 303 ~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vL 380 (863)
T TIGR02414 303 RDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVI 380 (863)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHH
Confidence 999999999999999997665554433111000000011 2355677778888864 3445778889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----C--EEEEEE
Q 002812 401 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 474 (877)
Q Consensus 401 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~--~~~l~Q 474 (877)
|||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+++|+ +|+.|+|+|+|+|++++ + +++++|
T Consensus 381 rML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q 459 (863)
T TIGR02414 381 RMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQ 459 (863)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999985 89999999999999863 2 466666
Q ss_pred EeeccCCCCCCCeeEEEEEEEECc--ccc-----------eeeEEeeccceEEEecccccccccCCCCCCceEEecCCce
Q 002812 475 SQFLSSGSPGDGQWIVPITLCCGS--YDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 541 (877)
Q Consensus 475 ~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 541 (877)
.+....+......|.|||.+...+ +.. ...+.++.+++++.++++. .+ ..+-++.+..
T Consensus 460 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~------~~---p~~sl~r~fs 530 (863)
T TIGR02414 460 STPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA------EK---PVPSLLRGFS 530 (863)
T ss_pred eCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC------CC---CeeeecCCCC
Confidence 543322333445899999996532 211 1235677778888887532 12 3577888888
Q ss_pred eEEEEEcCH--HHHHHHHHHHHccCCChhhHHHHHHH-----HHHHHHcCC-CC-HHHHHHHHHhccCCC--cHHHHHHH
Q 002812 542 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFGILDD-----HFALCMARQ-QT-LTSLLTLMASYSEET--EYTVLSNL 610 (877)
Q Consensus 542 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~Ra~li~D-----~~~la~~g~-l~-~~~~l~l~~~l~~E~--~~~~w~~~ 610 (877)
.+-++.|+. +.+..|...= .+.+..-+-+|-+.. ...-...|. +. -..+++.+..+-.+. |...-..+
T Consensus 531 apv~l~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~~ 609 (863)
T TIGR02414 531 APVNLEYPYSDEDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKALL 609 (863)
T ss_pred ceEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 888887764 3333333220 111221111221111 111011232 21 245566666543333 33333322
Q ss_pred HHHH--HHHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHH
Q 002812 611 ITIS--YKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKE 677 (877)
Q Consensus 611 ~~~l--~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~i~~~ac~~g~~~ 677 (877)
+..- ..|...+..-+|+ ....+..-++..+..+|+++.-.. ...+..-.+.||..++.++|..+.++
T Consensus 610 l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~ 689 (863)
T TIGR02414 610 LALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADDAE 689 (863)
T ss_pred hcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChh
Confidence 2221 2232222111111 223334444455566666653211 11233455899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHH
Q 002812 678 TLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEV 757 (877)
Q Consensus 678 c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll~~~ 757 (877)
..+.|.+.|++-- + -.-|-+.+.+++..-....++..+..++++++....-+|--.+.|.+ ..++.+.++
T Consensus 690 ~~~~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~--~~~~~~~~v 759 (863)
T TIGR02414 690 IRNLALEQFKSAD---N-----MTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATS--PRPDTLERV 759 (863)
T ss_pred HHHHHHHHHHhCC---C-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCC--CcccHHHHH
Confidence 9999998887531 1 11233333333321001122235555666666555556666666644 344556655
Q ss_pred HHHhc
Q 002812 758 LNFLL 762 (877)
Q Consensus 758 L~~~l 762 (877)
-.+.-
T Consensus 760 ~~l~~ 764 (863)
T TIGR02414 760 KALLQ 764 (863)
T ss_pred HHHhc
Confidence 55443
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=7.1e-82 Score=748.94 Aligned_cols=707 Identities=22% Similarity=0.283 Sum_probs=499.7
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEE-ECCCCEEEEEeCCceeeEEEEeeccCcCCcccccceeEEEecCCeEE
Q 002812 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKQALEPTKVELVEADEIL 89 (877)
Q Consensus 11 p~~~~p~~Y~l~l~~~~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (877)
|..+...||+|.|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~-------~~~~~--~~~~~~~~L 86 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ-------PLAPS--AYELDEEGL 86 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE-------EcCcc--ceEEcCCEE
Confidence 55688899999999999999999999999876 466789999999999999998542 11111 344456788
Q ss_pred EEEeCCCcCCceEEEEEEEEeeec--CCCcceEEeeeccCCeeeeeeeeccCCCCCCceeeccCCCCCceEEEEEEEeCC
Q 002812 90 VLEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS 167 (877)
Q Consensus 90 ~i~l~~~l~~g~~~l~i~y~g~l~--~~~~G~y~~~y~~~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~ka~f~l~i~~p~ 167 (877)
+|.. + ++.++|+|.|++... ..+.|+|++.+ +++|||||.+||+||||+|+|+.||+|+++|++|+
T Consensus 87 ~I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~ 154 (875)
T PRK14015 87 TIEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADK 154 (875)
T ss_pred EEec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEcc
Confidence 8872 3 346899999987653 45689998642 67899999999999999999999999999999999
Q ss_pred -CC-eEEcCCccccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecc----cCCCeEEEEEEcCCccchHHHHHHH
Q 002812 168 -EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNV 240 (877)
Q Consensus 168 -~~-~~~sn~~~~~~~-~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~ 240 (877)
.| +++|||+++... ..+++++++|..++|||+||+||++|+|+.++.. ..+++++++|++|+..+.++++++.
T Consensus 155 ~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~ 234 (875)
T PRK14015 155 AKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDS 234 (875)
T ss_pred ccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHH
Confidence 48 679999988774 4677889999999999999999999999987642 2235999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccc
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 320 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 320 (877)
++++|++||++||.|||++|+++|++|+|..|||||||+++|++..++.++...+...+..+..+||||+|||||||+||
T Consensus 235 ~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT 314 (875)
T PRK14015 235 LKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVT 314 (875)
T ss_pred HHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcce
Confidence 99999999999999999999999999999999999999999999999988876666677788999999999999999999
Q ss_pred cCcCchhhHhhHHHHHHHHHHHhhhCcc-hhhHHHHHHHHHHHhhhcccCCCCceeeecCCcchhhccccccccchhhHH
Q 002812 321 MEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 399 (877)
Q Consensus 321 ~~~w~d~WL~EGfa~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~v 399 (877)
++||+++|||||||+|++..+.....+. +............++..|+...+||+... +..+++..|+.++|.||++|
T Consensus 315 ~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~v 392 (875)
T PRK14015 315 CRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEV 392 (875)
T ss_pred ecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHH
Confidence 9999999999999999987765554331 11111100000123445766667887532 34567789999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----C--EEEEE
Q 002812 400 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELE 473 (877)
Q Consensus 400 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~--~~~l~ 473 (877)
||||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+++|++++ + +++++
T Consensus 393 LrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~ 471 (875)
T PRK14015 393 IRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLS 471 (875)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999986 89999999999999864 3 46667
Q ss_pred EEeeccCCCCCCCeeEEEEEEEECc--ccc----------eeeEEeeccceEEEecccccccccCCCCCCceEEecCCce
Q 002812 474 QSQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 541 (877)
Q Consensus 474 Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 541 (877)
|.+....+......|.|||.+..-+ +.. ...+.++.+++++.++++. .. ..+.++.+..
T Consensus 472 Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~fs 542 (875)
T PRK14015 472 QSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGFS 542 (875)
T ss_pred EeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCCC
Confidence 7654333333455899999996422 211 1235677778888887532 12 3477888888
Q ss_pred eEEEEEcCH--HHHHHHHHHHHccCCChhhHHHHH-HHHHH-HHHc-CC-CC-HHHHHHHHHhccCC--CcHHHHHHHHH
Q 002812 542 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFGIL-DDHFA-LCMA-RQ-QT-LTSLLTLMASYSEE--TEYTVLSNLIT 612 (877)
Q Consensus 542 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~Ra~li-~D~~~-la~~-g~-l~-~~~~l~l~~~l~~E--~~~~~w~~~~~ 612 (877)
.+-++.|+. +.+..|...= .+.++.-+-+|-+ ..... +... |. +. -..+++.++.+-.+ .+...-..++.
T Consensus 543 apv~~~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~ 621 (875)
T PRK14015 543 APVKLEYDYSDEDLLFLMAHD-SDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLT 621 (875)
T ss_pred CcEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHcc
Confidence 888888763 3333332210 1122222222221 11111 1111 22 21 23456655553322 23333333332
Q ss_pred HH--HHHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 002812 613 IS--YKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKETL 679 (877)
Q Consensus 613 ~l--~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~i~~~ac~~g~~~c~ 679 (877)
.. ..|...+..-+++ ....+..-++..+..+|.++.-.. ...+..-.+.||..++..++..+.++..
T Consensus 622 lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~ 701 (875)
T PRK14015 622 LPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAA 701 (875)
T ss_pred CCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 21 2222222111111 222333334444555566653111 0123455689999999999999999888
Q ss_pred HHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 002812 680 NEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLN 759 (877)
Q Consensus 680 ~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll~~~L~ 759 (877)
+.|.+.|++-- + -.-|-+.+.+++..-....++..+..++++++....-+|--.+.|.+-.. +.+.++-.
T Consensus 702 ~~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~--~~~~~v~~ 771 (875)
T PRK14015 702 ELAEAQFDQAD---N-----MTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAP--DTLERVRA 771 (875)
T ss_pred HHHHHHHhhCC---C-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCc--CHHHHHHH
Confidence 88888887431 1 11222233333321101122235555666666555556766666654444 45555444
Q ss_pred Hh
Q 002812 760 FL 761 (877)
Q Consensus 760 ~~ 761 (877)
+.
T Consensus 772 l~ 773 (875)
T PRK14015 772 LM 773 (875)
T ss_pred Hh
Confidence 43
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.2e-75 Score=674.89 Aligned_cols=426 Identities=24% Similarity=0.392 Sum_probs=349.1
Q ss_pred CCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECC-CCEEEEEeCCceeeEEEEeeccCcCCcccccceeEE----Eec
Q 002812 10 LPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKQALEPTKVE----LVE 84 (877)
Q Consensus 10 Lp~~~~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~----~~~ 84 (877)
=|..++|.||+|+|++|+++..|+|+|+|++++.++ ++.|+||+.+|+|++|.+++. ...+. .+.
T Consensus 7 n~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~----------~~~~~~~~~~~~ 76 (601)
T TIGR02411 7 NYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL----------PADFAIGERKEP 76 (601)
T ss_pred CCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc----------ccceEeccccCC
Confidence 367899999999999999999999999999999765 688999999999999988532 11122 223
Q ss_pred CCeEEEEEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeeec-cCCeeeeeeeeccCCCCCCceeeccCCCCCceEEEEE
Q 002812 85 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 162 (877)
Q Consensus 85 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~l~~~~~G~y~~~y~-~~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~ka~f~l~ 162 (877)
.++.++|.+++++.+| .++|+|.|++..+ ..|++...+. .+|..++++.|||||.+||+||||||+|++||+|+++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 5678999999999999 9999999999753 4577554332 3466778889999999999999999999999999999
Q ss_pred EEeCCCCeEEcCCcccceeecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecccCCCeEEEEEEcCCccchHHHHHH-HH
Q 002812 163 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 241 (877)
Q Consensus 163 i~~p~~~~~~sn~~~~~~~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~ 241 (877)
|++| ++|++||..+.+.. ++..+++|..++|||+||+||+||+|+..+ .|.++++|++|+..+.+++.+. .+
T Consensus 155 I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 88887665544332 345578899999999999999999998754 3678999999998888888888 99
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccc
Q 002812 242 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 320 (877)
Q Consensus 242 ~~~l~~~e~~fg~~yp~~kld~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 320 (877)
.++|+++|+++| |||++|+|+|++ |+|+.||||||| ++|.+..++.+.. ....+||||||||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999876 999999999987 789999999999 5777776775432 23579999999999999999
Q ss_pred cCcCchhhHhhHHHHHHHHHHHhhhCcchhhH-HHHHH--HHHHHhhhcccCCCCceeeecCCcc--hhhccccccccch
Q 002812 321 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRK 395 (877)
Q Consensus 321 ~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~~f~~i~Y~K 395 (877)
++||+|+|||||||+|++.+++++++|++... ..+.. .....+ +.+...+|+...+.+.. +++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 111122 22333445544433322 5678999999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCcceEEEEEe
Q 002812 396 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 466 (877)
Q Consensus 396 g~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~-----~~~l~~~-~~~W~~~~g~P~l~v~~~ 466 (877)
|+++|+||+..|| ++.|+++||.|+++|+|++++++|||++|.+.. +.+++.+ |+.|++++|+|.+++..+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998763 2456666 899999999999877643
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=8.9e-74 Score=644.89 Aligned_cols=385 Identities=46% Similarity=0.822 Sum_probs=343.4
Q ss_pred cCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCcCCcccccceeEEEecCCeE
Q 002812 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKQALEPTKVELVEADEI 88 (877)
Q Consensus 9 rLp~~~~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (877)
|||.+++|+||+|.|++++++.+|+|+++|++++.++++.|+||+.+|.|.++.+.+... ........+.++.+++.
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~---~~~~~~~~~~~~~~~~~ 77 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDS---SSEYKSSPFEYDDENEK 77 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEEC---SCTECCEEEEEECCBTE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccc---cccccccceeeccccce
Confidence 899999999999999999999999999999999999999999999999999999865321 11122233788888899
Q ss_pred EEEEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeeecc--CCeeeeeeeeccCCCCCCceeeccCCCCCceEEEEEEEe
Q 002812 89 LVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDV 165 (877)
Q Consensus 89 l~i~l~~~l~~g-~~~l~i~y~g~l~~~~~G~y~~~y~~--~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~ka~f~l~i~~ 165 (877)
++|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||++|.+||+||||||+|.+||+|+++|++
T Consensus 78 l~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~ 157 (390)
T PF01433_consen 78 LTITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITH 157 (390)
T ss_dssp EEEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEE
T ss_pred eehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeec
Confidence 999999999999 79999999999999999999999976 678899999999999999999999999999999999999
Q ss_pred CCCCeEEcCCccccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecccCCCeEEEEEEcCCccchHHHHHHHHHHH
Q 002812 166 PSELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKT 244 (877)
Q Consensus 166 p~~~~~~sn~~~~~~~-~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~ 244 (877)
|++++|+|||++.+.. ..+++++++|..++|||+|++||+||+|..++..+.+|+++++|++|+..+..+++++.+.++
T Consensus 158 p~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 237 (390)
T PF01433_consen 158 PKDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKA 237 (390)
T ss_dssp ETTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHH
T ss_pred cccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHH
Confidence 9999999999998874 456799999999999999999999999999886666679999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccCcC
Q 002812 245 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWW 324 (877)
Q Consensus 245 l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w 324 (877)
+++|+++||+|||++|+|+|++|+|..|||||||+|+|+++.++++++.++...+..+..+||||+|||||||+||++||
T Consensus 238 l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w 317 (390)
T PF01433_consen 238 LEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWW 317 (390)
T ss_dssp HHHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSG
T ss_pred HHHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccc
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HHhhhcccCCCCceeeecCCcchhhccccccccchh
Q 002812 325 THLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 396 (877)
Q Consensus 325 ~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg 396 (877)
+|+||+||||+|++++++++.+|++.++..+..+.. .++..|+...++|+...+.++.++...|+.++|.||
T Consensus 318 ~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 318 SDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 999999999999999999999999988888877766 779999999999999888899999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-53 Score=452.82 Aligned_cols=432 Identities=25% Similarity=0.379 Sum_probs=340.1
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCcCCccccccee-EEEecCCeEE
Q 002812 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKQALEPTK-VELVEADEIL 89 (877)
Q Consensus 11 p~~~~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 89 (877)
+..+...|++|++.+|++...++|+|.+++++..+...|+|+.++|.|.+|.+++.+ .+..+.. -.+......+
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~-----~~~~i~~~~~~~g~~~~~ 87 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEE-----PPFRIGFRQPFLGSGQKL 87 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCC-----CCCccCcccCCCCCceEE
Confidence 445678999999999999999999999999988877779999999999999997532 1222211 1222333445
Q ss_pred EEEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeee-ccCCeeeeeeeeccCCCCCCceeeccCCCCCceEEEEEEEeCC
Q 002812 90 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS 167 (877)
Q Consensus 90 ~i~l~~~l~~g-~~~l~i~y~g~l~~~~~G~y~~~y-~~~g~~~~~~~t~~~p~~Ar~~fPc~Dep~~ka~f~l~i~~p~ 167 (877)
++..+.+ +.| +.+|.|.|+... +..|+-.-.- ...|+.+.|..||||..+||..|||+|.|+.|.||+..|.+|.
T Consensus 88 ~l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~ 164 (613)
T KOG1047|consen 88 VLPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPM 164 (613)
T ss_pred Eeccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCC
Confidence 5555433 456 899999998643 3345533222 2347778999999999999999999999999999999999999
Q ss_pred CCeEEcCCccccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecccCCCeEEEEEEcCCccchHHHHHH-HHHHHH
Q 002812 168 ELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTL 245 (877)
Q Consensus 168 ~~~~~sn~~~~~~~-~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l 245 (877)
++++++++...+++ -..++..+.|....|+|+||+||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|
T Consensus 165 ~l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L 240 (613)
T KOG1047|consen 165 GLTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFL 240 (613)
T ss_pred cceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHH
Confidence 99999888665553 33457889999999999999999999987665 2667899999999888877776 899999
Q ss_pred HHHHHHhCCCCCCCCccEEEec-CCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccCcC
Q 002812 246 ELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWW 324 (877)
Q Consensus 246 ~~~e~~fg~~yp~~kld~v~~p-~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w 324 (877)
+.-|+.+| ||++.++|+|++| .|+.||||||-|.+...+ ||-.+. ....+|||||||-||||+||...|
T Consensus 241 ~~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sW 310 (613)
T KOG1047|consen 241 KAAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASW 310 (613)
T ss_pred HHHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCcc
Confidence 99999999 9999999999995 799999999977776666 555443 357899999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HHhhhcccCCCCceeeecCC--cchhhccccccccchhhHHHH
Q 002812 325 THLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVIR 401 (877)
Q Consensus 325 ~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~--~~~~~~~f~~i~Y~Kg~~vl~ 401 (877)
++.||||||++|++..++..++|+...-........ -.-..|.+...++...-+.+ .-+.+..|..+.|.||..+++
T Consensus 311 ehfWLNEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~ 390 (613)
T KOG1047|consen 311 EHFWLNEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALLF 390 (613)
T ss_pred chhhhcccchhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHHH
Confidence 999999999999999999999987432111111111 01233555556665433221 134577899999999999999
Q ss_pred HHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC----CH--HHHHHHhhcCCCcceEEEE
Q 002812 402 MLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVK 464 (877)
Q Consensus 402 mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~----~l--~~~~~~W~~~~g~P~l~v~ 464 (877)
.|++.+| ++.|...||.|+++|+|+.+.++||.+.|-+.... ++ +--++.|++.+|.|-..-.
T Consensus 391 ~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 391 YLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 9999999 77899999999999999999999999999876532 22 2347999999999986543
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=7.3e-51 Score=446.91 Aligned_cols=313 Identities=37% Similarity=0.637 Sum_probs=270.3
Q ss_pred eEEecCCceeEEEEEcCHHHHHHHHHHHHccCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhc-cCCCcHHHHHHHH
Q 002812 533 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 611 (877)
Q Consensus 533 wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l-~~E~~~~~w~~~~ 611 (877)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++|++|+|+|+++|+++++++|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987679999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 002812 612 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 691 (877)
Q Consensus 612 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~ 691 (877)
..|..+.+++...++.....|++|+++++.++++++||+..+++++..+.+|..++.+|| |+++|++.|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444559999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCc-CCc
Q 002812 692 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 768 (877)
Q Consensus 692 ~~~~--~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~~-i~~ 768 (877)
++.. .+||||+|.+|||++ +++|+.++|++++++|++++++.||..++.||||++||++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~~---~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCAG---VRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHHH---TTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHHH---HHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7443 379999999888775 4589999999999999999999999999999999999999999999999985 999
Q ss_pred ccceeeee-ec-cc--cHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHhhccCCCHHHHHHHHHHhhc--CCCchHHHH
Q 002812 769 QDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS--RCKPYIART 841 (877)
Q Consensus 769 qd~~~~~~-v~-~~--g~~~~~~fl~~n~~~i~~~~~~~-~~l~~~v~~~~~~~~t~~~~~~~~~f~~~--~~~~~~~~~ 841 (877)
||+..++. ++ .+ |++++|+|+++||+.|.++++++ ..+..++..+++.++|+++++++++||+. ++.++..++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988888 76 55 99999999999999999999865 47899999999999999999999999954 445688999
Q ss_pred HHHHHHHHH
Q 002812 842 LRQSIERVQ 850 (877)
Q Consensus 842 ~~~~le~i~ 850 (877)
++|++|+||
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999986
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=7.7e-35 Score=331.24 Aligned_cols=429 Identities=19% Similarity=0.275 Sum_probs=316.0
Q ss_pred eeEEEEEEE-ecCCCCeEEEEEEEEEEEE-CCCCEEEEEeCCceeeEEEEeeccCc--------------CCcccc----
Q 002812 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDVV-GDTKFIVLNAADLTINNRSVSFTNKV--------------SSKQAL---- 75 (877)
Q Consensus 16 p~~Y~l~l~-~~~~~~~~~G~v~I~~~~~-~~~~~i~L~~~~l~i~~v~~~~~~~~--------------~~~~~~---- 75 (877)
-.|..+.|. +|+.+.++.|.++|++... .....|.||++++.|.+|.+++..+. .....+
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 9999999999999999974 45899999999999999999764210 000000
Q ss_pred -----cceeEEEecCCeEEEEEeCCCcCC-c----eEEEEEEEEeeecCCCcceEEeeeccCCeeeeeeeeccC-CCCCC
Q 002812 76 -----EPTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 144 (877)
Q Consensus 76 -----~~~~~~~~~~~~~l~i~l~~~l~~-g----~~~l~i~y~g~l~~~~~G~y~~~y~~~g~~~~~~~t~~~-p~~Ar 144 (877)
...-...+.+++.|.|.++++++. | ..+++|.|+..-|..+--|++..|........+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 001112345568899999988532 2 456779998654444444666555333333344455554 56799
Q ss_pred ceeeccCCCCCceEEEEEEEeCCCCeEEcCCcccce--eecCCeEEEEEEeCCCCcceEEEEEEeeeeeeecccCCCeEE
Q 002812 145 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE--KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 222 (877)
Q Consensus 145 ~~fPc~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~--~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v 222 (877)
.||||.|.+..+++|++++++|++++++|+|.+... .++-..++++|.-+.|+++.-+||+||+|+.... ..+++|
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~--P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVE--PSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCC--CccCcc
Confidence 999999999999999999999999999999998876 2334488999999999999999999999998742 347899
Q ss_pred EEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHH
Q 002812 223 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 302 (877)
Q Consensus 223 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~ 302 (877)
..||-|+.....+...-...++++|||+++|..|||+.+.+|++|.-..--|....|.+++.+ +||+.+. ++.-...
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~i--IDq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNI--IDQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhh--hhHHHHH
Confidence 999999999888999999999999999999988999999999999876667777778888877 8888763 3444456
Q ss_pred HHHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHHhhhcccCC----CCceeeec
Q 002812 303 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAE----SHPIEVEV 378 (877)
Q Consensus 303 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~p~~~~~ 378 (877)
...+|-.||.||||-++|+..|+|.||-+|+|.|+..+++++++|..+...+...+.-..+.+|.... +.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 78899999999999999999999999999999999999999999987654443333223344443211 22332221
Q ss_pred C--------------CcchhhccccccccchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCC
Q 002812 379 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 444 (877)
Q Consensus 379 ~--------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~ 444 (877)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 111111111111234778888888888888877665555443 222223
Q ss_pred HHHHHHHhhcCCCcceEEEEEe
Q 002812 445 VNKLMNSWTKQKGYPVISVKVK 466 (877)
Q Consensus 445 l~~~~~~W~~~~g~P~l~v~~~ 466 (877)
++.|++.|++..|+|++.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5788888888888888887743
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.19 E-value=1e-09 Score=118.81 Aligned_cols=300 Identities=15% Similarity=0.183 Sum_probs=180.2
Q ss_pred EEEEEEeCCCCeEEcCCcccceeecCCeEE---EEEEeCCCCcceEEEEEEeeeeeeec-ccCCCeEEEEEEcCCccchH
Q 002812 159 FKITLDVPSELVALSNMPVIDEKVDGNMKT---VSYQESPIMSTYLVAVVIGLFDYVED-HTSDGIKVRVYCQVGKANQG 234 (877)
Q Consensus 159 f~l~i~~p~~~~~~sn~~~~~~~~~~~~~~---~~f~~t~~m~~yl~a~~vg~f~~~~~-~~~~g~~v~v~~~~~~~~~~ 234 (877)
+.+++.-|+ |.+.+.-+.+.+... ...- .+|..+|.+ +|.|...+- .+..+..+.++..-- ..+.
T Consensus 115 ~~~~~~~p~-wriAT~L~~~~~~~~-~F~aa~~~~lvDSPve--------~g~~~~~~~e~~g~ph~~~~~g~~p-~~d~ 183 (558)
T COG3975 115 LELTVIPPE-WRIATALPPVATGRF-VFYAASYEELVDSPVE--------AGLFELLDFEVTGAPHTIALRGELP-NFDK 183 (558)
T ss_pred eEEEecCcc-ceeeecCCccccCCc-eeecccHHHhcCChhh--------ccccceeeeeccCCceeEEEeeccc-cccH
Confidence 566666555 887777665442100 0111 123344433 233332221 222334455554321 3456
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHH
Q 002812 235 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 313 (877)
Q Consensus 235 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 313 (877)
+...+.++++++.-.+.|| +-|+.++.+++. .+-..||||+-.-.........+. +....+....+++||..|-
T Consensus 184 ~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~----~~~ky~~~l~llsHEyfH~ 258 (558)
T COG3975 184 ERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFT----DQDKYQDLLGLLSHEYFHA 258 (558)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecccccccccccccc----chhHHHHHHHHHHHHHHHh
Confidence 7777888999999999999 789999888765 556678999854333222222221 1222466789999999999
Q ss_pred HhcCccccCcC-----------chhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHH---HHHhhhcccCCCCceeeecC
Q 002812 314 WFGNLVTMEWW-----------THLWLNEGFATWVSYLAADSLFPEWKIWTQFLDEC---TEGLRLDGLAESHPIEVEVN 379 (877)
Q Consensus 314 WfGnlVt~~~w-----------~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~ 379 (877)
|-+..+.|.-- .-+|+.|||++|+..+..-.. +- -..++|+... ..++..-...-.+|+.....
T Consensus 259 WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl-~~~~~~l~~la~tl~~~~~~~gRl~~~laEsS~ 336 (558)
T COG3975 259 WNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GL-ISLETYLNYLAKTLARYLNTPGRLRQSLAESSF 336 (558)
T ss_pred ccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-cc-CcHHHHHHHHHHHHHHHhcCCceeccccccccc
Confidence 99987776432 459999999999997644321 10 0112333222 22222111111222221111
Q ss_pred Cc-----chhhcccccc--ccchhhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCChHHHHHHHHhccCCCH
Q 002812 380 HT-----GEIDEIFDAI--SYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPV 445 (877)
Q Consensus 380 ~~-----~~~~~~f~~i--~Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~df~~~l~~~~~~~l 445 (877)
++ ..-...-+.+ -|.||++|--+|...| |+..+...|+.+.+.+.. +..+++|+..++++++|.++
T Consensus 337 ~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~dl 416 (558)
T COG3975 337 DAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLDL 416 (558)
T ss_pred chhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccccH
Confidence 10 0000111122 3899999998888877 567788889999988766 66789999999999999999
Q ss_pred HHHHHHhhcCCCcceEEEEEeCCEEEEEEEe
Q 002812 446 NKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 476 (877)
Q Consensus 446 ~~~~~~W~~~~g~P~l~v~~~~~~~~l~Q~r 476 (877)
..|++..+.+..-|.+.---....+++++++
T Consensus 417 ~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 417 ATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 9999999998887766443333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.15 E-value=6.3e-11 Score=110.72 Aligned_cols=107 Identities=29% Similarity=0.487 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHHhhhcccCCCCceeeec
Q 002812 299 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEV 378 (877)
Q Consensus 299 ~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 378 (877)
...+..+++||++|+|+++.++.......|++||+|+|++... .. .+.......+..+...+..++....
T Consensus 22 ~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (128)
T PF13485_consen 22 EDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSF 91 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhccc
Confidence 3446699999999999999998777888999999999999331 11 1112222233333333323332211
Q ss_pred CCcchhhccccccccchhhHHHHHHHHhhCHHHHHHHHHHH
Q 002812 379 NHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 419 (877)
Q Consensus 379 ~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 419 (877)
.. ...+....|.+|.+++++|....|++.|++.|++|
T Consensus 92 ~~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 92 DF----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred cc----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 33455678999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.52 E-value=0.0054 Score=66.17 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhc--CccccC--cCchhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHHhhhc-ccCCCCc
Q 002812 299 KQRVATVVAHELAHQWFG--NLVTME--WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHP 373 (877)
Q Consensus 299 ~~~~~~~iaHElaHqWfG--nlVt~~--~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~p 373 (877)
...+..++|||+-|+=-- +.|... .-.|.|||||+|.-++.++.....+..+. ........+..+ .....+.
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~---i~d~R~~~y~~~~~~~~~~~ 212 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNN---IRDSRIPYYNNYTSGNYNCS 212 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCc---cccccHHHHhhccccCCCcc
Confidence 445789999999997522 334433 23699999999999999887766432211 000001111111 1111122
Q ss_pred eeeecCCcchhhccccccccchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHh-c-cCCCHHHHHHH
Q 002812 374 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNS 451 (877)
Q Consensus 374 ~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-~~~~l~~~~~~ 451 (877)
+... ... . -....|....+++.-|....|.+.+++.|.. -...+..+..++.-+ + .+.++.++|.+
T Consensus 213 l~~w-~~~---g--~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~ 280 (366)
T PF10460_consen 213 LTAW-SSF---G--DSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRR 280 (366)
T ss_pred eeec-CCC---c--cccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2211 111 1 1235799999999999888899887776652 123566776666543 3 35689999999
Q ss_pred hhcCC
Q 002812 452 WTKQK 456 (877)
Q Consensus 452 W~~~~ 456 (877)
|...-
T Consensus 281 w~~A~ 285 (366)
T PF10460_consen 281 WGVAL 285 (366)
T ss_pred HHHHH
Confidence 97655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=96.85 E-value=0.00067 Score=61.32 Aligned_cols=43 Identities=23% Similarity=0.470 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCccccC-----------cCchhhHhhHHHHHHHHHHHhh
Q 002812 302 VATVVAHELAHQWFGNLVTME-----------WWTHLWLNEGFATWVSYLAADS 344 (877)
Q Consensus 302 ~~~~iaHElaHqWfGnlVt~~-----------~w~d~WL~EGfa~y~~~~~~~~ 344 (877)
...+++||..|.|-+-.+.|. --+.+|+-|||++|++.++...
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 457899999999998655554 4567999999999999876544
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.24 E-value=0.72 Score=50.73 Aligned_cols=303 Identities=17% Similarity=0.150 Sum_probs=144.0
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEECcc--cc-----eeeEEeeccceEEEecccccccccCCCCCCceEEecCCce
Q 002812 469 KLELEQSQFLSSGSPGDGQWIVPITLCCGSY--DV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 541 (877)
Q Consensus 469 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 541 (877)
+++++|......+......|.|||.+..-+. .. ...+.++..++++.+.++. .. ...-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 5789998766666666679999999854332 21 1235677888899887642 22 4678899999
Q ss_pred eEEEEEcCH--HHHHHHHHHHHccCCChhhHH--------HHHHHHHHHHHcC-CCCH-HHHHHHHHhcc--CCCcHHHH
Q 002812 542 GFYRVKYDK--DLAARLGYAIEMKQLSETDRF--------GILDDHFALCMAR-QQTL-TSLLTLMASYS--EETEYTVL 607 (877)
Q Consensus 542 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~Ra--------~li~D~~~la~~g-~l~~-~~~l~l~~~l~--~E~~~~~w 607 (877)
.+-++.||- +.+.-|... +. .+.+|. ++|.+...-..+| .... ..+++.++.+- .+.|...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D~-D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---DS-DPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH----S-SHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---CC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 999998863 333333332 11 233442 1122222222222 0111 23455444432 22333333
Q ss_pred HHHHHH--HHHHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcC
Q 002812 608 SNLITI--SYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 674 (877)
Q Consensus 608 ~~~~~~--l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~i~~~ac~~g 674 (877)
..++.. ...|...+..-+|+ ....+..-+...+..+|+++.-.. ...+..-.|.||..++..++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 333222 12222222111111 222233333344455566651111 12344566999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 002812 675 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 754 (877)
Q Consensus 675 ~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll 754 (877)
.++..+.|.+.|+.-. .-.-|-+.+.+++..-....++..+..++++++....-+|--.+.|.+...| .+
T Consensus 233 ~~~~~~la~~qy~~A~--------nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~--~l 302 (367)
T PF11940_consen 233 DPEAAELAQEQYKSAD--------NMTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPD--TL 302 (367)
T ss_dssp CTHHHHHHHHHHHHSS--------SHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STT--HH
T ss_pred chHHHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCcc--HH
Confidence 9999999999997641 0122333333333321112233456666666655555577777777665543 56
Q ss_pred HHHHHHhccCcCCcccceeeee-eccc-cHHHHHHHHHHHHHHHHHHhCCC
Q 002812 755 LEVLNFLLSSEVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGSG 803 (877)
Q Consensus 755 ~~~L~~~l~~~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~i~~~~~~~ 803 (877)
.++-.+.-.+. |. -..| .|.+.-.|...|...+...=|.|
T Consensus 303 ~~V~~L~~Hp~---------F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~G 344 (367)
T PF11940_consen 303 ERVKKLMQHPA---------FDLKNPNRVRALIGAFAQANPVQFHAADGSG 344 (367)
T ss_dssp HHHHHHTTSTT---------TTTT-HHHHHHHHHHHHHC-HHHHT-TTSHH
T ss_pred HHHHHHhcCCC---------CCCCCCcHHHHHHHHHHhcChhhhcCCCCcH
Confidence 66555443332 12 1234 56666667777777776655543
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.70 E-value=0.0066 Score=55.52 Aligned_cols=39 Identities=28% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCccc--cCcCchhhHhhHHHHHHHHHHH
Q 002812 304 TVVAHELAHQWFGNLVT--MEWWTHLWLNEGFATWVSYLAA 342 (877)
Q Consensus 304 ~~iaHElaHqWfGnlVt--~~~w~d~WL~EGfa~y~~~~~~ 342 (877)
.+++||-+||=..|.=- .-.-.-.|+.||||+|++...+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 57999999999876421 1111238999999999996544
No 17
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.40 E-value=0.29 Score=49.10 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhCCC-CCCCCccEEEe--cCCCCccc----ccccceeeecccccccCCCChhHHHHHHHHHHHHHH
Q 002812 238 LNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAAGAM----ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL 310 (877)
Q Consensus 238 l~~~~~~l~~~e~~fg~~-yp~~kld~v~~--p~~~~g~m----E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl 310 (877)
.....++..+..+.|-.+ .+-+..+.|.+ .++..-|- .+-.-|.++.+.+--.+. ....+..+..+|.||+
T Consensus 27 ~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~--~~~~~~Ei~Gvl~HE~ 104 (205)
T PF04450_consen 27 EQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYIAKYPA--DGDVRDEIIGVLYHEM 104 (205)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHHhhccc--ccchHHHHHHHHHHHH
Confidence 344455555556555433 22333444432 33321111 112356666553322221 1234567899999999
Q ss_pred HHHHhcCccccCcCchhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHHhhhcccCCCCceeeecCCcchhhccccc
Q 002812 311 AHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDA 390 (877)
Q Consensus 311 aHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~ 390 (877)
+|-|=.+--.. .--||-||+|.|+-..+- +.|. ....|... ..++
T Consensus 105 ~H~~Q~~~~~~---~P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~~---------~~wd- 149 (205)
T PF04450_consen 105 VHCWQWDGRGT---APGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGGG---------DSWD- 149 (205)
T ss_pred HHHhhcCCCCC---CChhheecHHHHHHHHcC--CCCc--------------------cccCCCCC---------CCcc-
Confidence 99765443221 235899999999976521 1110 01111110 1233
Q ss_pred cccchhhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHH
Q 002812 391 ISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 451 (877)
Q Consensus 391 i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~ 451 (877)
-.|.-.|.+|.-|+. ..|+ .|.+-|..=+.+..| +.+++|.. .+|+++.++.+.
T Consensus 150 ~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 150 DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 378899999999998 6664 455555555555555 45666654 458889888764
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.63 E-value=0.43 Score=47.81 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCc-----ccccccceeeecccccc-cCCCChhHHHHHHHHHHHHHHHHHH
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQW 314 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g-----~mE~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHqW 314 (877)
+.+.+....+.+ |-+.+++.++|.-+.+ .+...|-..+....+++ -+. ......+..++|||+.|.+
T Consensus 5 i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~~ 77 (195)
T PF10026_consen 5 IEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHNC 77 (195)
T ss_pred HHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHHH
Confidence 344454445444 4567888766533222 11223344444443333 222 1234478899999999986
Q ss_pred hcCcccc----CcCchhhHhhHHHHHHHHHHHhhhC
Q 002812 315 FGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF 346 (877)
Q Consensus 315 fGnlVt~----~~w~d~WL~EGfa~y~~~~~~~~~~ 346 (877)
--..+.. ..--|.-+.||+|.+++........
T Consensus 78 r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 78 RYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 4333321 1223567899999999976555443
No 19
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.67 E-value=4.4 Score=48.20 Aligned_cols=198 Identities=18% Similarity=0.189 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHccCCChhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhH
Q 002812 550 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL 628 (877)
Q Consensus 550 ~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g-~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~ 628 (877)
+.....|.+.+..++++..++++++.=+.++++.- .--.+.+++|++.=.-..+...+..++-.+..+.+......+..
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44566777777778899999999988877776443 33335555666543344567788888777777665543222211
Q ss_pred ----HHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhh
Q 002812 629 ----LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 704 (877)
Q Consensus 629 ----~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~ 704 (877)
...+.+|+...+....++ + + ..-+...+..++..|++..+.. +..++.+ ....|+.+|.
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~-------~-~---~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~ 498 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSK-------G-D---EEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRL 498 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhc-------C-C---chheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHH
Confidence 234444444444433321 1 1 1224667888899999877654 3444442 2357888887
Q ss_pred hhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHH-HHHHhCCCCCHHHHHHHHHHhccC
Q 002812 705 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTR-ILSSLASCPDVNIVLEVLNFLLSS 764 (877)
Q Consensus 705 ~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-k~~-~l~aL~cs~d~~ll~~~L~~~l~~ 764 (877)
+...++-+.+.......-+.++..|.+...+.| |.. ++..|-|-++...++++.+.+..+
T Consensus 499 ~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 499 AAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 554444332323456677889999998766555 554 445556669999999988877554
No 20
>PRK04860 hypothetical protein; Provisional
Probab=87.05 E-value=1.2 Score=42.74 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc--cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002812 237 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 314 (877)
Q Consensus 237 ~l~~~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 314 (877)
+...+...+..-+++||.|+|.|++.+-.- ...||+- .-+-|.|+.. ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 445667778888999999988876544332 2224432 2233444433 2222 234567899999999987
Q ss_pred h
Q 002812 315 F 315 (877)
Q Consensus 315 f 315 (877)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 3
No 21
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=82.05 E-value=8.1 Score=38.94 Aligned_cols=94 Identities=21% Similarity=0.354 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002812 235 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 314 (877)
Q Consensus 235 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 314 (877)
+.+.......+..|++.+|.++ +++.+=-.-. ..|....-|.|+|+-.-+.+++. -+..+|+||+||--
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~ 176 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLR 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhc
Confidence 3445566677788888888643 3433322222 25666667788888774443332 47899999999987
Q ss_pred hcCccccCcCchhhHhhHHHHHHHHHHHhhhCcchhhHHHH
Q 002812 315 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 355 (877)
Q Consensus 315 fGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~ 355 (877)
.-| --...| ..++...|+|......
T Consensus 177 ~~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~~ 201 (205)
T PF01863_consen 177 HPN-----HSKRFW-----------ALVEKYMPDYKERRKW 201 (205)
T ss_pred cCC-----CCHHHH-----------HHHHHHCcCHHHHHHH
Confidence 644 333334 3445677887654443
No 22
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=80.44 E-value=1.9 Score=46.29 Aligned_cols=40 Identities=35% Similarity=0.405 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhhh
Q 002812 300 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 345 (877)
Q Consensus 300 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~ 345 (877)
..++.+|-||+|||=+. .+ +|.=+||+||++.+...+.+.
T Consensus 163 ~~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 163 GELARLIFHELAHQTLY----VK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred hHHHHHHHHHHhhceee----cC--CCchhhHHHHHHHHHHHHHHH
Confidence 35899999999999432 22 356689999999998776654
No 23
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=79.90 E-value=1.9 Score=43.54 Aligned_cols=40 Identities=33% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhhh
Q 002812 300 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 345 (877)
Q Consensus 300 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~ 345 (877)
..++.+|-||+|||=|.- . +|.=+||+||+..+...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~--~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYV--N----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEee--c----CcchHhHHHHHHHHHHhHHHH
Confidence 468999999999997642 2 356689999999998777654
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=79.84 E-value=2.3 Score=40.39 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=34.1
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEecCC--CCccccc-ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 002812 243 KTLELYK-EYFAVPYSLPKLDMIAIPDF--AAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 316 (877)
Q Consensus 243 ~~l~~~e-~~fg~~yp~~kld~v~~p~~--~~g~mE~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 316 (877)
+.+.-++ .+|+.++|-++ +..-... ..|.-.. .+.|.++.. + ........+..+|.||++|.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~--i~w~~r~~~~~G~~~~~~~~I~ln~~-l------~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPK--VVWNKRLRKTGGRCLLKSAEIRLNPK-L------LTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCE--EEEehhhhhhhHHhhcCCCEEEeCHH-H------HhhccHHHHHhhHHHHHHHHHHH
Confidence 3444455 78987777652 2222221 1222221 334444443 1 11112345788999999999964
No 25
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=78.42 E-value=21 Score=42.85 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHccCCChhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhcc----
Q 002812 550 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQ-TLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADA---- 624 (877)
Q Consensus 550 ~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l-~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~---- 624 (877)
......|.+.+..+.++..+.++++.-+....+.--. -.+.+++|++.-....+..++.+++-.+..+.+.....
T Consensus 394 ~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 3455666667777788888888776655554422111 12223334433233456677888877777766554332
Q ss_pred ------ChhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 002812 625 ------RPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLL 698 (877)
Q Consensus 625 ------~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i 698 (877)
.....+.+..++.+.+..... ..+..-+...+..++.+|++..+.. +..+..+. ...
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~-----------~~~~~~~~~~LkaLgN~g~~~~i~~----l~~~i~~~--~~~ 536 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVS-----------RGDEEEKIVYLKALGNLGHPESIPV----LLPYIEGK--EEV 536 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHT-GGGHHH----HHTTSTTS--S-S
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhh-----------ccCHHHHHHHHHHhhccCCchhhHH----HHhHhhhc--ccc
Confidence 011222222333222221111 1123445667778889999865544 45555542 258
Q ss_pred CcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHHH-HHHhCCCCCHHHHHHHHHHhcc
Q 002812 699 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRI-LSSLASCPDVNIVLEVLNFLLS 763 (877)
Q Consensus 699 ~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-k~~~-l~aL~cs~d~~ll~~~L~~~l~ 763 (877)
|..+|.+..-++-+.+..-.....+.++..|.+.+.+.| |... +..|-|-++...++++...+..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 889998655554432333455678999999999877665 4443 3344566999999998877643
No 26
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=69.95 E-value=4.9 Score=43.55 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhh
Q 002812 302 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 344 (877)
Q Consensus 302 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~ 344 (877)
.-.++|||+|||= | ...|.=|+|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 5679999999995 3 34899999999987654
No 27
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=69.20 E-value=2.8e+02 Score=34.09 Aligned_cols=129 Identities=15% Similarity=0.222 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCcc-ccCcCchhhHhhHHHHHHHHHHHhhhCc---chhh-H--HHHHHHHHHHhhhcccCCCCceee
Q 002812 304 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI-W--TQFLDECTEGLRLDGLAESHPIEV 376 (877)
Q Consensus 304 ~~iaHElaHqWfGnlV-t~~~w~d~WL~EGfa~y~~~~~~~~~~~---~~~~-~--~~~~~~~~~~~~~d~~~~~~p~~~ 376 (877)
-.+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+..... .|-. . ...+...+.+. .+ ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~-i~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL-ID---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH-Hh---cCCC---
Confidence 4688999999988777 444566888 778888888765542110 1111 0 00111111111 01 1111
Q ss_pred ecCCcchhhccccccc-cchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCC--hHHHHHHHHhc-cCCCHHHHHHHh
Q 002812 377 EVNHTGEIDEIFDAIS-YRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAK--TEDLWAALEEG-SGEPVNKLMNSW 452 (877)
Q Consensus 377 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~--~~df~~~l~~~-~~~~l~~~~~~W 452 (877)
|+... -.|=..+..|+...-|++.|+..=+.|=+. .-.+.. .-.+++-+... ++.|+..+++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 12111 235555555888889999998877777665 222222 12333444444 889999999988
No 28
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=63.92 E-value=12 Score=31.51 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHH
Q 002812 660 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 739 (877)
Q Consensus 660 ~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~ 739 (877)
...|..++..+|..++++.+....+++ .+ -++.+|..+..++.. .|+...++.|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 457788888889888886665555444 33 246888876655543 467778889999888877766678
Q ss_pred HHHHHhC
Q 002812 740 RILSSLA 746 (877)
Q Consensus 740 ~~l~aL~ 746 (877)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888875
No 29
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=61.82 E-value=13 Score=36.94 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhh
Q 002812 302 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 344 (877)
Q Consensus 302 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~ 344 (877)
...++|||+.|-|.- ..-----+.++-||+++.+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 357899999999962 11112236789999999999987664
No 30
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=61.56 E-value=15 Score=35.03 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCC---Ccccccccceeeecccc-cccCCCChhHHHHHHHHH
Q 002812 232 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 305 (877)
Q Consensus 232 ~~~~~~l~~~~~~l~~~e~~fg~~yp~~k--ld~v~~p~~~---~g~mE~~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 305 (877)
..+..|...+.++.+||.+.|| .-++.. ..++..=.+. ..|.=+-..++|..-.- .+.+- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 4456677788999999999999 556542 3344332221 12222222344433211 11111 112468
Q ss_pred HHHHHHHH
Q 002812 306 VAHELAHQ 313 (877)
Q Consensus 306 iaHElaHq 313 (877)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999995
No 31
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=55.77 E-value=57 Score=28.35 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCCEEEEEeC-Cce--eeEEEEeeccCcCCcccccceeEEEecCCeEEEEEeCCCcCCceEEEEEEEEe
Q 002812 45 DTKFIVLNAA-DLT--INNRSVSFTNKVSSKQALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 110 (877)
Q Consensus 45 ~~~~i~L~~~-~l~--i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g 110 (877)
+...|.|... .++ ...+.+.+.++ ..+.......+.....+++.++.+|.+|.|+|.-+--+
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g----~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDG----KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEE----TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCC----ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 3455666654 233 66676654322 23333333444456789999999999999987655444
No 32
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=54.04 E-value=39 Score=32.01 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=33.4
Q ss_pred cccceeEEEecCCeEEEEEeCCCcCCceEEEEEEEEeeecCCCcceEEe
Q 002812 74 ALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRS 122 (877)
Q Consensus 74 ~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g~l~~~~~G~y~~ 122 (877)
.+....+..+.+...+.|.+++|++|| -+++|.+.+.-+....|.|.-
T Consensus 76 ~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~f 123 (146)
T PF10989_consen 76 SIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQF 123 (146)
T ss_pred ccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEEE
Confidence 344466888889999999999999999 334444444434445677653
No 33
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=53.64 E-value=13 Score=33.26 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 002812 301 RVATVVAHELAHQWFGNLV 319 (877)
Q Consensus 301 ~~~~~iaHElaHqWfGnlV 319 (877)
+...+++|||+|.+++..-
T Consensus 41 ~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 41 RQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 3467999999999987654
No 34
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=52.59 E-value=17 Score=40.73 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=32.1
Q ss_pred CCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002812 257 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 314 (877)
Q Consensus 257 p~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 314 (877)
|-..++++.|-+-...|--.+|--++--+.++...+ +...++.|||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHh
Confidence 344578888866555555555544443333433322 34468999999999953
No 35
>PRK04351 hypothetical protein; Provisional
Probab=51.78 E-value=17 Score=34.46 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=30.6
Q ss_pred HHHHHHhCCCCCCCCccEEEecCC-CCcccc--cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002812 246 ELYKEYFAVPYSLPKLDMIAIPDF-AAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 314 (877)
Q Consensus 246 ~~~e~~fg~~yp~~kld~v~~p~~-~~g~mE--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 314 (877)
++-+++|+.|+|. .+..-... ..||.= ....|-+++. +++ ......+..+|+||++|-.
T Consensus 12 ~~s~~~F~~~f~~---~v~~n~RlrttgG~~~l~~~~I~lnp~--ll~-----~~~~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 12 EISLEYFGKPFRH---QAYFNKRLRTTGGRYLLKDHHIEFNPK--MLE-----EYGLEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHHhCCCCCc---EEEEeccchhhhheeecCCCeEEeCHH--HHh-----hccHHHHHhhHHHHHHHHH
Confidence 3447889987773 33322222 123222 1223444433 222 1234568899999999953
No 36
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=51.71 E-value=29 Score=33.12 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 002812 298 NKQRVATVVAHELAHQWFG 316 (877)
Q Consensus 298 ~~~~~~~~iaHElaHqWfG 316 (877)
....+..+|.||++|.|..
T Consensus 56 ~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457889999999999973
No 37
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=49.57 E-value=94 Score=31.80 Aligned_cols=93 Identities=20% Similarity=0.324 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002812 235 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 314 (877)
Q Consensus 235 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 314 (877)
+.+.+.....+..|.+.+|.+++--++. ..-. ..|.-..-|.|.++-. +..- ....+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-~WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-RWGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccc-eeeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 3555667777888899999776533222 1111 1333333444444433 2111 23457899999999998
Q ss_pred hcCccccCcCchhhHhhHHHHHHHHHHHhhhCcchhhHHH
Q 002812 315 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 354 (877)
Q Consensus 315 fGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 354 (877)
..|- ++ ..| ..++.++|++.....
T Consensus 188 e~nH-s~----~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-SK----RFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-cH----HHH-----------HHHHHHCCChHHHHH
Confidence 8772 22 233 345667788765544
No 38
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=48.47 E-value=26 Score=35.62 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCCccccccc----ceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCcc
Q 002812 244 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG----LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLV 319 (877)
Q Consensus 244 ~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~g----li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlV 319 (877)
.++-+-+..|.+.|.+++-++-.|.. .|.-..+ .|.+... ++.. .+...+..++|||++|-.-++..
T Consensus 36 ~v~~l~~~~~~~~~~~~v~v~~~~~~--NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~~ 106 (226)
T PF01435_consen 36 IVEELARRAGLGIPPPRVYVIDSPSP--NAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHIL 106 (226)
T ss_dssp HHHHHHHHHHCTSS--EEEEE--SSE--EEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCC--cEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCcc
Confidence 33333344455666655555544542 3322221 2444444 3321 23456889999999999987665
Q ss_pred cc
Q 002812 320 TM 321 (877)
Q Consensus 320 t~ 321 (877)
..
T Consensus 107 ~~ 108 (226)
T PF01435_consen 107 KS 108 (226)
T ss_dssp CC
T ss_pred hH
Confidence 44
No 39
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=48.28 E-value=1.1e+02 Score=33.88 Aligned_cols=118 Identities=18% Similarity=0.267 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHH-HHHcCCCCHHHHHHHHHhccCCCcH--------HHHHHH----HHHHHHHHHHHhccChhHHH-HH
Q 002812 567 ETDRFGILDDHFA-LCMARQQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 632 (877)
Q Consensus 567 ~~~Ra~li~D~~~-la~~g~l~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~ 632 (877)
+-||.++|+|+.. |..+..++|..-|.+++.-.+|-.+ ..|... ...|..|.+.+... |+..+ .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 6789999999966 5556678999999999887776543 445542 12244555555432 22222 13
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhhcCCCCCCCCcchhhh
Q 002812 633 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 705 (877)
Q Consensus 633 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~-~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 705 (877)
..|+.+++.. ...-+|. ++..|...|.+ +|...|...|+.|... .+|++|-++
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~~----~lpaNLiQA 444 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRTA----RLPANLIQA 444 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhhc----cccHHHHHH
Confidence 3444444432 2233444 55678888987 9999999999999743 578888764
No 40
>PRK05457 heat shock protein HtpX; Provisional
Probab=46.04 E-value=33 Score=36.60 Aligned_cols=68 Identities=26% Similarity=0.424 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 317 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~---~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 317 (877)
..+.++-+.+..|+ |.|++-++-.+... .|.-.+-+.|.+... ++- .-+.+++..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~------~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ------NMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh------hCCHHHHHHHHHHHHHHHHcCC
Confidence 34555566677775 57777666543322 222222334555443 221 1134568999999999976655
No 41
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=45.30 E-value=70 Score=31.77 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 002812 301 RVATVVAHELAHQW 314 (877)
Q Consensus 301 ~~~~~iaHElaHqW 314 (877)
..+.++||||+|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 45789999999996
No 42
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=42.82 E-value=73 Score=32.52 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcC
Q 002812 569 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 648 (877)
Q Consensus 569 ~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 648 (877)
-|.+++.=...+...|.++...+.+++..|-.|-+..|-..+....+.+-+.++..+.. ...+.+.+=+.+.-+..+ +
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~-~~~~ldLlP~~Ls~L~~~-~ 81 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNK-NGKWLDLLPKCLSALSAS-E 81 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTTTHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcc-cchHHHHHHHHHHHHhcC-c
Confidence 37788888888999999999999999999999999998888887777766666532211 112222222233222222 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 002812 649 WDSKPGESHLDALLRGEIFTALALLG-HKETLNEASKRFHAF 689 (877)
Q Consensus 649 ~~~~~~~~~~~~~lr~~i~~~ac~~g-~~~c~~~a~~~f~~~ 689 (877)
--...+....-...+..++...|... .+.|+-....+|++.
T Consensus 82 ~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~ 123 (223)
T PF14675_consen 82 SINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDV 123 (223)
T ss_dssp --SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS
T ss_pred ccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Confidence 10112233445788999999999876 446666666677654
No 43
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=42.79 E-value=42 Score=36.02 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=40.3
Q ss_pred HHHHhCCCCCCCCccEEEecCCCCcccccc---cceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccc
Q 002812 248 YKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 320 (877)
Q Consensus 248 ~e~~fg~~yp~~kld~v~~p~~~~g~mE~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 320 (877)
....-|+++ .+++.++..|.-.+-++... |.|.+.+. ++ + ..+...+..+++||++|.=-++.+.
T Consensus 108 ~a~~~~~~~-~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~-----~l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 108 LARQAGIPH-MPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-D-----LLNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHCCCCC-CCeeEEecCCCccceecCCCCCCeeEEecHH-HH-h-----hCCHHHHHHHHHHHHHHHhcccHHH
Confidence 344445332 46677776665445555553 67776665 33 2 1234568999999999988776654
No 44
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=42.76 E-value=1.5e+02 Score=32.89 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH
Q 002812 304 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 360 (877)
Q Consensus 304 ~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~ 360 (877)
..|..+.| |+|.--... --+|||-|+|..+.++.+++.+....+.++.+.+
T Consensus 251 l~ivR~ea-~YF~PQ~qT-----kVMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 251 LRIVRKEA-QYFYPQRQT-----KVMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HHHHHHHH-HHhcchHHH-----HHhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 44555555 455433333 2489999999999999998887666556655543
No 45
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.70 E-value=3.8e+02 Score=33.28 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=76.9
Q ss_pred ChhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q 002812 566 SETDRFGILDDHFALCMARQQTL-TSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 644 (877)
Q Consensus 566 ~~~~Ra~li~D~~~la~~g~l~~-~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 644 (877)
|..-|.||-.=.-.-..+.+... ..+++-++++-+.++...|+.++-.|..+-+.++....+....+..-+..++..++
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 67778777554445555555432 55677777777778889999999988888777652222333344444444443333
Q ss_pred HHcCCccCCCCCHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHhhc-------CC---CCCCCCcchhh
Q 002812 645 EKLGWDSKPGESHLDALLRGEIFT---ALALLGHKETLNEASKRFHAFLA-------DR---TTPLLPPDIRK 704 (877)
Q Consensus 645 ~~lg~~~~~~~~~~~~~lr~~i~~---~ac~~g~~~c~~~a~~~f~~~~~-------~~---~~~~i~~dlr~ 704 (877)
+.. ..-...++.....+..+|++ .+|.+..+.-+ .+.+.|..|+. .+ +.-.++|+.|+
T Consensus 182 ~~~-~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 182 QIF-NGLLSQESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHH-HhhccccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 331 11112335555556555555 55666554322 34556666652 22 23457788886
No 46
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=41.55 E-value=90 Score=30.89 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCc
Q 002812 296 AANKQRVATVVAHELAHQWFGNL 318 (877)
Q Consensus 296 ~~~~~~~~~~iaHElaHqWfGnl 318 (877)
.-....+..++.|||||.++|+-
T Consensus 76 fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 76 FLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred EeeHHHHHHHHHHHHHhcccCCc
Confidence 33456789999999999998873
No 47
>PRK02870 heat shock protein HtpX; Provisional
Probab=40.73 E-value=55 Score=35.77 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHH
Q 002812 242 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 313 (877)
Q Consensus 242 ~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 313 (877)
.++++-+....|+|+ .|++-++-.+...+-++. .-+.|.+.+. ++ + .-+..++..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~-----~L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-E-----KLDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-h-----hCCHHHHHHHHHHHHHHH
Confidence 344444455557543 356554433322222221 2245555554 32 1 113456899999999996
No 48
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=40.38 E-value=30 Score=38.73 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHhCCCCCCC--CccEEEecCCCCcccccccceeeecccccccCCCCh-hHHHHHHHH
Q 002812 228 VGKANQGKFALNVAVKTLELYKEYFAVPYSLP--KLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA-AANKQRVAT 304 (877)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~--kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~-~~~~~~~~~ 304 (877)
++....+..|-..+..+.+||.+.||. -.++ -+.++..-.|. -++.-....-..++|.+.... ......-..
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr-~S~Dn~g~~l~s~vHyG----~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGR-NSYDNNGMPLVSTVHYG----KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhcc-cCcCCCCCceEEEEeec----cccccccccCceeEeecCCcceecccccccc
Confidence 344445566777889999999999993 2443 34444433331 122222222233444332110 000111246
Q ss_pred HHHHHHHHHH---hcCccccCcCchhhHhhHHHHHHHHHHHhh
Q 002812 305 VVAHELAHQW---FGNLVTMEWWTHLWLNEGFATWVSYLAADS 344 (877)
Q Consensus 305 ~iaHElaHqW---fGnlVt~~~w~d~WL~EGfa~y~~~~~~~~ 344 (877)
++||||.|-- --+++.-... -=|||+|+.-+...+...
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~ 380 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQY 380 (507)
T ss_pred eehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHH
Confidence 8999999944 4456655433 348999999998654433
No 49
>PRK04897 heat shock protein HtpX; Provisional
Probab=39.65 E-value=40 Score=36.26 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccc---ccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 317 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~m---E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 317 (877)
..+.++-+.+..|+ |.|++-++--+...+-+. ..-+.|.+... ++- .-+.+++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 45566666677775 567776654332211111 12234544433 221 1134568999999999965443
No 50
>PRK03982 heat shock protein HtpX; Provisional
Probab=38.87 E-value=69 Score=34.24 Aligned_cols=66 Identities=26% Similarity=0.406 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-----cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 315 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE-----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 315 (877)
..+.++-+.+..|+| .|++-++ |+-...|+- .-|.|...+. ++ + ..+..++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~-----~l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-IL-N-----LLNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HH-h-----hCCHHHHHHHHHHHHHHHHc
Confidence 445555556667754 4565544 332222221 1234444444 22 1 11345689999999999765
Q ss_pred cC
Q 002812 316 GN 317 (877)
Q Consensus 316 Gn 317 (877)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 51
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=38.70 E-value=87 Score=28.60 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=35.3
Q ss_pred CEEEEEeC---CceeeEEEEeeccCcCCcccccceeEEEecCC-eEEEEEeCCCcCCceEEEEEEEEe
Q 002812 47 KFIVLNAA---DLTINNRSVSFTNKVSSKQALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 110 (877)
Q Consensus 47 ~~i~L~~~---~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l~~g~~~l~i~y~g 110 (877)
..|.|+.. ...+..+.+.+.++ ..........+..+ ..++|.++++|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~----~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG----EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC----CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 35556554 23345666654322 12222223333333 469999999999999999877764
No 52
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=38.33 E-value=52 Score=27.48 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCC--cccccccceeeecccccccCCC---ChhHHHHHHHHHHHHHHHHHH
Q 002812 244 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQH---SAAANKQRVATVVAHELAHQW 314 (877)
Q Consensus 244 ~l~~~e~~fg~~yp~~kld~v~~p~~~~--g~mE~~gli~~~e~~ll~~~~~---~~~~~~~~~~~~iaHElaHqW 314 (877)
+-..+|..||.+ +.+..+-.-|.-.. ..|. .-.++.... +.+.+.. ++. .-..+++||++|=+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 456789999954 66655554333211 1111 112333333 3332211 111 13478999999954
No 53
>PRK03072 heat shock protein HtpX; Provisional
Probab=38.23 E-value=62 Score=34.61 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 002812 240 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 316 (877)
Q Consensus 240 ~~~~~l~~~e~~fg~~yp~~kld~v~~p~~~---~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 316 (877)
...+.++-+.+..|+ |.|++-++-.+... .|....-+.+..... ++ + ..+.+++..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~-----~l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-Q-----ILNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-H-----hCCHHHHHHHHHHHHHHHhcC
Confidence 345666667777785 56776555443321 221111112333332 33 1 113456899999999996544
Q ss_pred C
Q 002812 317 N 317 (877)
Q Consensus 317 n 317 (877)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 54
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=38.08 E-value=43 Score=33.70 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=20.0
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHhcCccc
Q 002812 288 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 320 (877)
Q Consensus 288 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 320 (877)
+|++........-.+-.+|||||.|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 444444455555567889999999976443333
No 55
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=37.90 E-value=1.7e+02 Score=32.23 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=48.2
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHH-H------------
Q 002812 246 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-H------------ 312 (877)
Q Consensus 246 ~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-H------------ 312 (877)
++..+|++ .. --++.+...++..++||-.-+-|.++.+.. .....+..++.||+. |
T Consensus 120 ~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~QPl 188 (349)
T PF08014_consen 120 ERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRAQPL 188 (349)
T ss_pred HHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccccCCc
Confidence 44455555 22 124555556778777776655566665422 234568899999994 5
Q ss_pred HHhcCccccCcCchhhHhhHHHHHHHHHH
Q 002812 313 QWFGNLVTMEWWTHLWLNEGFATWVSYLA 341 (877)
Q Consensus 313 qWfGnlVt~~~w~d~WL~EGfa~y~~~~~ 341 (877)
.|++...-+. .=..||+|.+.+++.
T Consensus 189 ~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 189 KILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred HHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 3443222111 123799999999764
No 56
>PRK01345 heat shock protein HtpX; Provisional
Probab=37.32 E-value=71 Score=34.66 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 317 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 317 (877)
..+.++-+.+..|+| .|++-++-.+...+-+... -+.|.+.+. ++-. .+..++..++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 455666667778865 4665544333222222221 124554444 3321 133568999999999976554
No 57
>PRK02391 heat shock protein HtpX; Provisional
Probab=35.29 E-value=65 Score=34.58 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 317 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 317 (877)
..+.++-+-+..|+| .|++-++-.+...+.+.. .-+.|.+.+. ++- . -+..++..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMR-R-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 345555556677754 567666554322222211 2234444433 221 1 123568899999999976554
No 58
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=34.88 E-value=25 Score=34.39 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 002812 302 VATVVAHELAHQW 314 (877)
Q Consensus 302 ~~~~iaHElaHqW 314 (877)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999997
No 59
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=34.10 E-value=25 Score=30.72 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHH
Q 002812 301 RVATVVAHELAHQW 314 (877)
Q Consensus 301 ~~~~~iaHElaHqW 314 (877)
....+++||++|-|
T Consensus 78 GC~~TL~HEL~H~W 91 (141)
T PHA02456 78 GCRDTLAHELNHAW 91 (141)
T ss_pred chHHHHHHHHHHHH
Confidence 46789999999999
No 60
>PRK03001 M48 family peptidase; Provisional
Probab=34.03 E-value=70 Score=34.10 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 317 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~---~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 317 (877)
..+.++-+.+..|+| .|++-++--+... .|.-...+.|.+.+. ++- . -+.+++..++|||++|-=-++
T Consensus 69 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~-~-----l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLP--MPKVYLINEDQPNAFATGRNPEHAAVAATTG-ILR-V-----LSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEecCCCcceEEecCCCCCeEEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHhCCC
Confidence 445666667777765 4555444322111 111111233444444 221 1 134568999999999975443
No 61
>PRK10301 hypothetical protein; Provisional
Probab=33.10 E-value=2.3e+02 Score=25.92 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.3
Q ss_pred CCeEEEEEeCCCcCCceEEEEEEEEe
Q 002812 85 ADEILVLEFAETLPTGMGVLAIGFEG 110 (877)
Q Consensus 85 ~~~~l~i~l~~~l~~g~~~l~i~y~g 110 (877)
+...+.+.++.+|.+|.|+|+-+-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34567888888899999987655544
No 62
>PRK09687 putative lyase; Provisional
Probab=31.94 E-value=6.4e+02 Score=26.72 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHH
Q 002812 661 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTR 740 (877)
Q Consensus 661 ~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ 740 (877)
..|..++..++..+++..+....... ++ -++++|.+.-.++.. +..+++...+.|...... .+..-|..
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~L----~d-----~~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L~D-~~~~VR~~ 211 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINLL----KD-----PNGDVRNWAAFALNS-NKYDNPDIREAFVAMLQD-KNEEIRIE 211 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHh----cC-----CCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhcC-CChHHHHH
Confidence 46666666667777766554443333 33 134677643222221 223455556666666643 34456777
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 002812 741 ILSSLASCPDVNIVLEVLNFL 761 (877)
Q Consensus 741 ~l~aL~cs~d~~ll~~~L~~~ 761 (877)
.+.|||...++.-+..+++.+
T Consensus 212 A~~aLg~~~~~~av~~Li~~L 232 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKEL 232 (280)
T ss_pred HHHHHHccCChhHHHHHHHHH
Confidence 888888888877777666654
No 63
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.26 E-value=1.8e+02 Score=25.80 Aligned_cols=42 Identities=26% Similarity=0.525 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHH
Q 002812 785 AWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEE 828 (877)
Q Consensus 785 ~~~fl~~n~~~i~~~~~~~~~l~~~v~~~~~~~~t~~~~~~~~~ 828 (877)
.|+|+++||.-|..-++.. ..-+.--+.+.+.+.++++++++
T Consensus 1 ~~~~~~~~w~ii~a~~~~~--~~~~~~~l~~~~a~~~~~~~l~~ 42 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGIA--GGIFWLWLRRTYAKREDIEKLEE 42 (106)
T ss_pred ChHHHHhCcHHHHHHHHHH--HHHHHHHHHHhhccHHHHHHHHH
Confidence 3899999999988866421 22333335666777777777633
No 64
>PRK01265 heat shock protein HtpX; Provisional
Probab=30.14 E-value=94 Score=33.74 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 002812 242 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 316 (877)
Q Consensus 242 ~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 316 (877)
.+.++-+.+..|+ |.|++-++-.+.-.+-+... -+-|.+.+. ++ + ..+..++..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~-----~l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-K-----ILNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-h-----hCCHHHHHHHHHHHHHHHHcc
Confidence 4555555666775 56676555433211111111 134444443 22 1 113456899999999995433
No 65
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=29.81 E-value=1.9e+02 Score=27.45 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=24.2
Q ss_pred eEEEEEEcCCcc---chHHHHHHHHHHHHHHHHHHhCCC
Q 002812 220 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVP 255 (877)
Q Consensus 220 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~ 255 (877)
.++++|..+... .......+.+.+++..+++..++.
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~ 40 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLK 40 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 467888777642 234456778888888888876533
No 66
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.89 E-value=1.2e+02 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC
Q 002812 396 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 443 (877)
Q Consensus 396 g~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~ 443 (877)
=+.++.+|...++.+.+ .-|..+++.++-+-++-++|.+.+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36789999999999886 456667777888889999999999988873
No 67
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=40 Score=35.77 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCc
Q 002812 298 NKQRVATVVAHELAHQWFGNL 318 (877)
Q Consensus 298 ~~~~~~~~iaHElaHqWfGnl 318 (877)
....++.+++||+|||=-++.
T Consensus 271 ~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 271 DDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999976643
No 68
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=27.48 E-value=82 Score=29.63 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHH
Q 002812 241 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 312 (877)
Q Consensus 241 ~~~~l~~~e~~fg~~yp~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 312 (877)
..+.++-.+..|+-+||.++...=.=-. ..| --.+..+.|=++|..-.......+..+|.|||||
T Consensus 7 L~~~~~~as~~~~r~~~~p~~~~n~Rg~-taG------~ayL~~~~I~lNP~ll~en~~~f~~~vV~HELaH 71 (156)
T COG3091 7 LQQCVEQASLKFFRKFFRPKASYNQRGR-TAG------GAYLLKSEIRLNPKLLEENGEDFIEQVVPHELAH 71 (156)
T ss_pred HHHHHHHHHHHhcCCCCCcceehhhhhh-hcc------hhhccccccccCHHHHHHccHHHHHHHHHHHHHH
Confidence 3445555555555589988754321100 111 1111111222222211112234577889999987
No 69
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.29 E-value=4.6e+02 Score=29.86 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=44.9
Q ss_pred EecCCCCeEEEEEEEEEEEECC--CCEEEEEeCC---ceeeEEEEeeccCcCCccc-ccceeEEEecCCeEEEEEeCCCc
Q 002812 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKQA-LEPTKVELVEADEILVLEFAETL 97 (877)
Q Consensus 24 ~~~~~~~~~~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~l~~~l 97 (877)
++|+.+....=++.|++++..+ .+...|-... -.+..+.+...++...... .....+......+...|.|+.||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566665666666777776544 3444443322 1233333332211000000 01112222223356899999999
Q ss_pred CCc-eEEEEEEEEe
Q 002812 98 PTG-MGVLAIGFEG 110 (877)
Q Consensus 98 ~~g-~~~l~i~y~g 110 (877)
.|| +.+|.+.|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888763
No 70
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=27.28 E-value=1.4e+02 Score=30.46 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 002812 302 VATVVAHELAHQW 314 (877)
Q Consensus 302 ~~~~iaHElaHqW 314 (877)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 71
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=26.92 E-value=75 Score=31.72 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 002812 300 QRVATVVAHELAHQ 313 (877)
Q Consensus 300 ~~~~~~iaHElaHq 313 (877)
...+.++||||+|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45788999999995
No 72
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=26.28 E-value=1.3e+02 Score=27.73 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.9
Q ss_pred cCCeEEEEEeCCCcCCceEEEEEEE
Q 002812 84 EADEILVLEFAETLPTGMGVLAIGF 108 (877)
Q Consensus 84 ~~~~~l~i~l~~~l~~g~~~l~i~y 108 (877)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677788888999999999888
No 73
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=1.5e+02 Score=35.43 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhcCCCCCCCCcchhh-hhheeeeeecccCCHHHHHHHHHHHHc
Q 002812 654 GESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIRK-AAYVAVMQKVSASDRSGYESLLRVYRE 731 (877)
Q Consensus 654 ~~~~~~~~lr~~i~~~ac~-~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~-~vy~~~~~~~~~g~~~~~~~l~~~y~~ 731 (877)
+|+.-.+..|.+.+..||- +|-++ .|..+-++...+ -+|-+|. -+|...+.-+-.|+.....+|+.---+
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrqe---~Ad~lI~el~~d-----kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQE---DADPLIKELLRD-----KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhhh---hhHHHHHHHhcC-----CchhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 4556678899999999885 45543 555566666544 2566774 455544433447788888888876544
Q ss_pred CCCHHHHHHHHHHhC--CCCCHHHHHHHHHHhcc
Q 002812 732 TDLSQEKTRILSSLA--SCPDVNIVLEVLNFLLS 763 (877)
Q Consensus 732 ~~~~~ek~~~l~aL~--cs~d~~ll~~~L~~~l~ 763 (877)
.-+.+-|+-..-||| |++||+.+-+++.++-.
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 444556777777887 88999999999887643
No 74
>PF13205 Big_5: Bacterial Ig-like domain
Probab=25.43 E-value=4.4e+02 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.2
Q ss_pred cCCeEEEEEeCCCcCCc-eEEEEEEEE
Q 002812 84 EADEILVLEFAETLPTG-MGVLAIGFE 109 (877)
Q Consensus 84 ~~~~~l~i~l~~~l~~g-~~~l~i~y~ 109 (877)
..+..+.|.+..+|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 56678999999999999 999999554
No 75
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=24.33 E-value=1.5e+03 Score=28.35 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcCCccCC
Q 002812 574 LDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKP 653 (877)
Q Consensus 574 i~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~ 653 (877)
+.-.-+++-.+.++....-.+++.|-+|.+-.-|.+.-+.+ .++.+..++...+..+-. +
T Consensus 106 l~~l~aL~~~~~~p~~~ivsllkalfq~~~vqs~aq~~R~~-------------~~~Il~~~l~~~~~~l~s-~------ 165 (1030)
T KOG1967|consen 106 LGGLKALILMSKLPDNFIVSLLKALFQEVQVQSLAQKERLL-------------QYEILEWFLDYRLEFLKS-L------ 165 (1030)
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHhcchHHHHHHHHhh-------------HHHHHHHHHHHHHHHHhc-c------
Confidence 33344555666677666667777777776666665544332 112222222222211100 0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc-CCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcC
Q 002812 654 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA-DRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRET 732 (877)
Q Consensus 654 ~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~-~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~ 732 (877)
+.| .+-..+++.+..-.++.|+--+-.++++... +-.-.+.-.|+-+.++|++=...+.--.+... -
T Consensus 166 ~~D----~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~--------I 233 (1030)
T KOG1967|consen 166 GPD----FLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTIT--------I 233 (1030)
T ss_pred cch----HHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCccc--------c
Confidence 111 1122233333344578899888888888765 21112234577778888774332221111110 0
Q ss_pred CCHHHHHHHHHHhCCCCC--HHHHHHHHHHhccCcC-Ccccceeeee-eccc-cHHHHHHHHHHHHHHHHHHhCC
Q 002812 733 DLSQEKTRILSSLASCPD--VNIVLEVLNFLLSSEV-RSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGS 802 (877)
Q Consensus 733 ~~~~ek~~~l~aL~cs~d--~~ll~~~L~~~l~~~i-~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~i~~~~~~ 802 (877)
+..+-+..+..+|++++- |..+--+++.+-+... -.-|....+. .... |......+...+|+.|+..+++
T Consensus 234 ~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 234 RREDLKASLRSALVSTPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred cHHHHHHHHHHHHhcCccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 112346678888887764 4444444444433322 2235444444 3333 7777788899999999988765
No 76
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=23.03 E-value=3.6e+02 Score=29.39 Aligned_cols=89 Identities=21% Similarity=0.256 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 002812 665 EIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 744 (877)
Q Consensus 665 ~i~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~~l~a 744 (877)
-|-..+++.+..+-.....+.+. .+|.....+. |..+..+ .-+++--+.+.++...+.+......+++|
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~---------~lP~~vl~aL-~~~LEh~-~l~~~l~~~l~~~~~~~~d~~~~~a~lRA 239 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALP---------HLPPEVLYAL-CGCLEHQ-PLPDKLAEALLERLEQAPDLELLSALLRA 239 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHh---------hCChHHHHHH-HHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46667777776653333333322 1454444432 3333322 23666788899998888888889999999
Q ss_pred hCCCCCHHHHHHHHHHhccC
Q 002812 745 LASCPDVNIVLEVLNFLLSS 764 (877)
Q Consensus 745 L~cs~d~~ll~~~L~~~l~~ 764 (877)
||++.........++.++..
T Consensus 240 ls~~~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 240 LSSAPASDLVAILIDALLQS 259 (340)
T ss_pred HcCCCchhHHHHHHHHHhcC
Confidence 99999998888878888765
No 77
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=22.90 E-value=1.4e+02 Score=32.03 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--------CCCccEEEecCCCCcccc-cccceeeecccccccCCCChhHHHHHHH
Q 002812 233 QGKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVA 303 (877)
Q Consensus 233 ~~~~~l~~~~~~l~~~e~~fg~~yp--------~~kld~v~~p~~~~g~mE-~~gli~~~e~~ll~~~~~~~~~~~~~~~ 303 (877)
+.+..++...++++...++.|++.+ .++..+|.-+..+.|.|- ..+-|.+.... .+.- -.......-.
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~-l~~~~~~~~~ 220 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNEL-LNPNPLRKGG 220 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHH-H-HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--Hhcc-cCHhHcCCCC
Confidence 3556677788899999999998773 233377777777767777 33344443220 0000 0001111124
Q ss_pred HHHHHHHHHHHhcCccccCcCchhhHhhHHHHHHHHHHHhhhCc
Q 002812 304 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 347 (877)
Q Consensus 304 ~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~ 347 (877)
-.+.||+.|+-= ..+-.|.. +-|.-...++..+...+.+
T Consensus 221 WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 221 WGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 579999999742 22112333 5777777777766665543
No 78
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=22.87 E-value=1.8e+02 Score=31.29 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHh
Q 002812 824 REVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKEL 872 (877)
Q Consensus 824 ~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~i~~wl~~~ 872 (877)
.+++.|.+........+.+++-++.|+.|.+|+++.+.. ..|.+|.++.
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~ 284 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESEL 284 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhc
Confidence 568888887766788999999999999999999987644 4478888764
No 79
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=22.73 E-value=2.8e+02 Score=28.07 Aligned_cols=40 Identities=20% Similarity=0.025 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcCccc-----cCcCchhhHhhHHHHHHHHH
Q 002812 301 RVATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYL 340 (877)
Q Consensus 301 ~~~~~iaHElaHqWfGnlVt-----~~~w~d~WL~EGfa~y~~~~ 340 (877)
+-..++|||+.|-|+..-.- ...|...=..|--|++++..
T Consensus 71 r~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 71 RKRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 34578999999999986531 12223333457777777643
No 80
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=22.21 E-value=90 Score=25.93 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=42.2
Q ss_pred CcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 002812 699 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 764 (877)
Q Consensus 699 ~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~ 764 (877)
++..|..+..+++ +.++.+....+.+.. +..++.-|...+.+||...++..+..+...+.++
T Consensus 13 ~~~vr~~a~~~L~---~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALG---ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHH---CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH---HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 4667765443333 245666677777776 5677788888999999988888777776655443
No 81
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=22.16 E-value=3.2e+02 Score=26.73 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCc
Q 002812 298 NKQRVATVVAHELAHQWFGNLVTMEW 323 (877)
Q Consensus 298 ~~~~~~~~iaHElaHqWfGnlVt~~~ 323 (877)
.+..+..+++|||.|.|=--....+|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 45568899999999998433333343
No 82
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=22.05 E-value=2e+02 Score=34.89 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=46.7
Q ss_pred EEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCC--------Ccccccc----cceeeeccccc
Q 002812 221 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--------AGAMENY----GLVTYRETALL 288 (877)
Q Consensus 221 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~p~~~--------~g~mE~~----gli~~~e~~ll 288 (877)
.+.+|..++.....+.+.+.....+.|=..++...-|.+-..++..-.|. .|+|=+. |++.+.+.
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 46788888877666666677777777766666634455544444432221 2334332 22222221
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHH
Q 002812 289 YDDQHSAAANKQRVATVVAHELAHQ 313 (877)
Q Consensus 289 ~~~~~~~~~~~~~~~~~iaHElaHq 313 (877)
.....+.++||||+|-
T Consensus 319 ---------~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 ---------ILLAFAVVLAHELGHN 334 (716)
T ss_pred ---------cchhHHHHHHHHHHhh
Confidence 1234788999999996
No 83
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=20.92 E-value=56 Score=28.17 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCChHH
Q 002812 403 LQNYLGAECFQRSLASYIKKYACSNAKTED 432 (877)
Q Consensus 403 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~d 432 (877)
++.+||++.|....+.|+.++.-.+.+..+
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 466789999999999999998766655443
No 84
>cd00244 AlgLyase Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.
Probab=20.61 E-value=1.1e+03 Score=25.63 Aligned_cols=77 Identities=9% Similarity=0.154 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCccC-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc--CCCCCCCCcch
Q 002812 626 PELLDYLKQFFISLFQNSAEKLGWDSK-PGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA--DRTTPLLPPDI 702 (877)
Q Consensus 626 ~~~~~~~~~~~~~l~~~~~~~lg~~~~-~~~~~~~~~lr~~i~~~ac~~g~~~c~~~a~~~f~~~~~--~~~~~~i~~dl 702 (877)
++....++.++.+++.-+....+-.+. ...+|. ..--..+...|...|+.+...++.+.|+.-.. .+++ ..|-++
T Consensus 148 ~~d~~~i~~Wf~~~l~wl~s~~~~~e~~~~NNHg-yWya~qVaa~A~~tg~~~l~~~a~~~~~~~~~QI~~DG-sqP~EL 225 (339)
T cd00244 148 TEQAERIEKWFARVADQVVSDWSGLPLKKINNHS-YWAAWSVMATGVATNRRDLFDWAVGEYKVAAGQVDEDG-FLPNEL 225 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcCchhhccCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccC-CCcHHH
Confidence 345578888988888876654443221 122232 34455678888899999999999988876432 1222 356555
Q ss_pred hh
Q 002812 703 RK 704 (877)
Q Consensus 703 r~ 704 (877)
..
T Consensus 226 aR 227 (339)
T cd00244 226 KR 227 (339)
T ss_pred hh
Confidence 44
Done!