BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002813
(877 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 157/579 (27%), Positives = 265/579 (45%), Gaps = 81/579 (13%)
Query: 333 DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392
++R +++ Y A + N+N R +S+G N++ +++R PFLD + K DK
Sbjct: 298 NSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDK 357
Query: 393 IDPKYVFYSSR-LDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451
ID Y S +DL T L++ +E + +K N AD
Sbjct: 358 IDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK-NRKTAD------------------- 397
Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGL-------------LKA 498
SK FI +CFF+T L+ GL +KA
Sbjct: 398 -----------------------SKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKA 434
Query: 499 FSDFKHLVQDISRAEDTLATLKATQ--------GQTPSSQLNLEITRIEKEIELSSQEKL 550
+ V+ I+ D A Q T S + L+ + ++L + +
Sbjct: 435 LKEEIEKVKKIAANHDVFARFITAQLSKMEKALKTTESLRFALQGFFAHRSLQLEVFDFI 494
Query: 551 CYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPD----TCPMEFACMPEHFVED 606
C + L +H F ++ + + D +G + D P+ F PE VE
Sbjct: 495 CGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEG 554
Query: 607 AMELLIFASRIPKA--LDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRR 663
+ ++ S+ + L F+ F M + P+ + NP+L+ K+V++L+ MP
Sbjct: 555 PVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLT 614
Query: 664 SGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW- 722
S +FE ++ + L+ LL YV +E TGS +QFYDKFN R++I+ +LE L+
Sbjct: 615 DNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYY 674
Query: 723 QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAE 780
++PS++N W+ + ++ F+ ++ND +LLDE L+ + E+ I+ E+ N A
Sbjct: 675 KIPSYKNQLIWQS---QNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRAR 731
Query: 781 WE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 838
R ++++ +TRL S + LA++ + + S+ I A F+ PE++ R+A
Sbjct: 732 GAPPTREEEDKELQTRL-ASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLA 790
Query: 839 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877
SMLNY L LVGP+ L +KDP+ Y F PK LLK ++T
Sbjct: 791 SMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTT 829
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 8 RSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVD 67
RS IEDI+ + TTD Y L +E + +G L D ++ +L+
Sbjct: 20 RSMTAIEDIL----------QITTDPSDTRGY-SLLKSEEVPQGS--TLGVDFIDTLLLY 66
Query: 68 RLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIH 127
+L+ N + PF YL +C+RR + K+I K+K L + ++ ++++ Y +
Sbjct: 67 QLTEN-EKLDKPFEYLNDCFRRNQQQ-KRI--TKNKPNAESLHSTFQEIDRLVIGYGVVA 122
Query: 128 LANPDF 133
L +F
Sbjct: 123 LQIENF 128
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 157/579 (27%), Positives = 265/579 (45%), Gaps = 81/579 (13%)
Query: 333 DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392
++R +++ Y A + N+N R +S+G N++ +++R PFLD + K DK
Sbjct: 284 NSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDK 343
Query: 393 IDPKYVFYSSR-LDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451
ID Y S +DL T L++ +E + +K N AD
Sbjct: 344 IDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK-NRKTAD------------------- 383
Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGL-------------LKA 498
SK FI +CFF+T L+ GL +KA
Sbjct: 384 -----------------------SKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKA 420
Query: 499 FSDFKHLVQDISRAEDTLATLKATQ--------GQTPSSQLNLEITRIEKEIELSSQEKL 550
+ V+ I+ D A Q T S + L+ + ++L + +
Sbjct: 421 LKEEIEKVKKIAANHDVFARFITAQLSKMEKALKTTESLRFALQGFFAHRSLQLEVFDFI 480
Query: 551 CYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPD----TCPMEFACMPEHFVED 606
C + L +H F ++ + + D +G + D P+ F PE VE
Sbjct: 481 CGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEG 540
Query: 607 AMELLIFASRIPKA--LDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRR 663
+ ++ S+ + L F+ F M + P+ + NP+L+ K+V++L+ MP
Sbjct: 541 PVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLT 600
Query: 664 SGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW- 722
S +FE ++ + L+ LL YV +E TGS +QFYDKFN R++I+ +LE L+
Sbjct: 601 DNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYY 660
Query: 723 QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAE 780
++PS++N W+ + ++ F+ ++ND +LLDE L+ + E+ I+ E+ N A
Sbjct: 661 KIPSYKNQLIWQS---QNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRAR 717
Query: 781 WE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 838
R ++++ +TRL S + LA++ + + S+ I A F+ PE++ R+A
Sbjct: 718 GAPPTREEEDKELQTRL-ASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLA 776
Query: 839 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877
SMLNY L LVGP+ L +KDP+ Y F PK LLK ++T
Sbjct: 777 SMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTT 815
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 8 RSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVD 67
RS IEDI+ + TTD Y L +E + +G L D ++ +L+
Sbjct: 6 RSMTAIEDIL----------QITTDPSDTRGY-SLLKSEEVPQGS--TLGVDFIDTLLLY 52
Query: 68 RLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIH 127
+L+ N + PF YL +C+RR + K+I K+K L + ++ ++++ Y +
Sbjct: 53 QLTEN-EKLDKPFEYLNDCFRRNQQQ-KRI--TKNKPNAESLHSTFQEIDRLVIGYGVVA 108
Query: 128 LANPDF 133
L +F
Sbjct: 109 LQIENF 114
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 154/579 (26%), Positives = 259/579 (44%), Gaps = 81/579 (13%)
Query: 333 DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392
++R + + Y A + N+N R +S+G N++ +++R PFLD + K DK
Sbjct: 298 NSRTDXISYFAHIANKNHLRRADHPPFKELSSNGFXSNITLLLVRFSQPFLDISYKKIDK 357
Query: 393 IDPKYVFYSSR-LDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451
ID Y S +DL T L++ +E + +K N AD
Sbjct: 358 IDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK-NRKTAD------------------- 397
Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGL-------------LKA 498
SK FI +CFF+T L+ GL +KA
Sbjct: 398 -----------------------SKPNFISDCFFLTLTYLHYGLGGTLSFEEKXGSEIKA 434
Query: 499 FSDFKHLVQDISRAEDTLATLKATQ--------GQTPSSQLNLEITRIEKEIELSSQEKL 550
+ V+ I+ D A Q T S + L+ + ++L + +
Sbjct: 435 LKEEIEKVKKIAANHDVFARFITAQLSKXEKALKTTESLRFALQGFFAHRSLQLEVFDFI 494
Query: 551 CYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPD----TCPMEFACMPEHFVED 606
C + L +H F ++ + + D +G + D P+ F PE VE
Sbjct: 495 CGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEG 554
Query: 607 AMELLIFASRIPKA--LDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRR 663
+ ++ S+ + L F+ F + P+ + NP+L+ K+V++L+ P
Sbjct: 555 PVNYSLYISKYQTSPIFRNPRLGSFVEFTTXVLRCPELVSNPHLKGKLVQLLSVGAXPLT 614
Query: 664 SGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW- 722
S +FE ++ + L+ LL YV +E TGS +QFYDKFN R++I+ +LE L+
Sbjct: 615 DNSPGFXXDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYY 674
Query: 723 QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAE 780
++PS++N W+ + ++ F+ +ND +LLDE L+ + E+ I+ E+ N A
Sbjct: 675 KIPSYKNQLIWQS---QNNADFFVRFVARXLNDLTFLLDEGLSNLAEVHNIQNELDNRAR 731
Query: 781 WE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 838
R ++++ +TRL S + LA++ + S+ I A F+ PE++ R+A
Sbjct: 732 GAPPTREEEDKELQTRL-ASASRQAKSSCGLADKSXKLFEIYSKDIPAAFVTPEIVYRLA 790
Query: 839 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877
S LNY L LVGP+ L +KDP+ Y F PK LLK ++T
Sbjct: 791 SXLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTT 829
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 8 RSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVD 67
RS IEDI+ + TTD Y L +E + +G L D ++ +L+
Sbjct: 20 RSXTAIEDIL----------QITTDPSDTRGY-SLLKSEEVPQGS--TLGVDFIDTLLLY 66
Query: 68 RLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIH 127
+L+ N + PF YL +C+RR + K+I K+K L + ++ ++++ Y +
Sbjct: 67 QLTEN-EKLDKPFEYLNDCFRRNQQQ-KRI--TKNKPNAESLHSTFQEIDRLVIGYGVVA 122
Query: 128 LANPDF 133
L +F
Sbjct: 123 LQIENF 128
>pdb|3FLE|A Chain A, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis.
pdb|3FLE|B Chain B, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis
Length = 249
Score = 35.8 bits (81), Expect = 0.093, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 651 KMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGS---HTQFYDK 707
K +EVLN + GS S + SL+YL+R K Y + +F G+ H+Q ++
Sbjct: 178 KEIEVLNIYGDLEDGSHS-DGRVSNSSSQSLQYLLRGSTKSYQEXKFKGAKAQHSQLHEN 236
Query: 708 FNIRHNIAELLEYLWQ 723
++ + E++++LW+
Sbjct: 237 KDVAN---EIIQFLWE 249
>pdb|3HGI|A Chain A, Crystal Structure Of Catechol 1,2-Dioxygenase From The
Gram- Rhodococcus Opacus 1cp
pdb|3HHY|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
Catechol
pdb|3HJ8|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
4-Chlorocatechol
pdb|3HJQ|A Chain A, Crystal Structure Of Catechol 1,2-Dioxygenase From
Rhodococc 1cp In Complex With 3-Methylcatechol
pdb|3HJS|A Chain A, Crystal Structure Of Catechol 1,2-Dioxygenase From
Rhodococc 1cp In Complex With 4-Methylcatechol
pdb|3I4V|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
3-Chlorocatechol
pdb|3HHX|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
Pyrogallol
Length = 280
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 39/195 (20%)
Query: 562 LIQHALSF--YRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPK 619
+++H +++ YR+ WL+D+ G + PL + F+E ++E ++ SR
Sbjct: 49 ILKHGVTYPEYRVFKQWLIDVGEGGEWPL----------FLDVFIEHSVEEVLARSR--- 95
Query: 620 ALDGVLLDDFMNFIIMFMASPKYIRN-PYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQ 678
+ + P YI N P L SK C +P R T +F G
Sbjct: 96 -----------KGTMGSIEGPYYIENSPELPSK------CTLPMREEDEKITPLVFSGQV 138
Query: 679 MSLE--YLVRNLLKLYVDIEFTGSHTQF---YDKFNIRHNIAELLEYLWQVPSHRNAWRQ 733
L+ L ++L+ + G ++QF ++N+R I E +++ + + A Q
Sbjct: 139 TDLDGNGLAGAKVELW-HADNDGYYSQFAPHLPEWNLRGTIIADEEGRYEITTIQPAPYQ 197
Query: 734 IAKEEEKGVYLNFLN 748
I + G ++ N
Sbjct: 198 IPTDGPTGQFIEAQN 212
>pdb|3I4Y|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
3,5-Dichlorocatechol
pdb|3I51|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
4,5-Dichlorocatechol
Length = 270
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 39/195 (20%)
Query: 562 LIQHALSF--YRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPK 619
+++H +++ YR+ WL+D+ G + PL + F+E ++E ++ SR
Sbjct: 39 ILKHGVTYPEYRVFKQWLIDVGEGGEWPL----------FLDVFIEHSVEEVLARSR--- 85
Query: 620 ALDGVLLDDFMNFIIMFMASPKYIRN-PYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQ 678
+ + P YI N P L SK C +P R T +F G
Sbjct: 86 -----------KGTMGSIEGPYYIENSPELPSK------CTLPMREEDEKITPLVFSGQV 128
Query: 679 MSLE--YLVRNLLKLYVDIEFTGSHTQF---YDKFNIRHNIAELLEYLWQVPSHRNAWRQ 733
L+ L ++L+ + G ++QF ++N+R I E +++ + + A Q
Sbjct: 129 TDLDGNGLAGAKVELW-HADNDGYYSQFAPHLPEWNLRGTIIADEEGRYEITTIQPAPYQ 187
Query: 734 IAKEEEKGVYLNFLN 748
I + G ++ N
Sbjct: 188 IPTDGPTGQFIEAQN 202
>pdb|1WGZ|A Chain A, Crystal Structure Of Carboxypeptidase 1 From Thermus
Thermophilus
pdb|1WGZ|B Chain B, Crystal Structure Of Carboxypeptidase 1 From Thermus
Thermophilus
pdb|1WGZ|C Chain C, Crystal Structure Of Carboxypeptidase 1 From Thermus
Thermophilus
Length = 510
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 34 DPRIA------YLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCY 87
+PR A +L+ T A + +EG R RVLV+R++G P+A P YL Y
Sbjct: 452 EPRFARGEFQPFLDWTRARIHAEGSRFR------PRVLVERVTGEAPSARPFLAYLEKKY 505
>pdb|3HOA|A Chain A, Crystal Structure Of The Thermus Thermophilus M32
Carboxypeptidase
pdb|3HOA|B Chain B, Crystal Structure Of The Thermus Thermophilus M32
Carboxypeptidase
Length = 509
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 34 DPRIA------YLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCY 87
+PR A +L+ T A + +EG R RVLV+R++G P+A P YL Y
Sbjct: 452 EPRFARGEFQPFLDWTRARIHAEGSRFR------PRVLVERVTGEAPSARPFLAYLEKKY 505
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 202 LKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIE 261
++GL GS++ NF++ L L Y +S K L + S YL R+++
Sbjct: 743 MRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802
Query: 262 MTSIL 266
+ L
Sbjct: 803 VAQDL 807
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 202 LKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIE 261
++GL GS++ NF++ L L Y +S K L + S YL R+++
Sbjct: 743 MRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802
Query: 262 MTSIL 266
+ L
Sbjct: 803 VAQDL 807
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,278,993
Number of Sequences: 62578
Number of extensions: 975240
Number of successful extensions: 2397
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2373
Number of HSP's gapped (non-prelim): 18
length of query: 877
length of database: 14,973,337
effective HSP length: 107
effective length of query: 770
effective length of database: 8,277,491
effective search space: 6373668070
effective search space used: 6373668070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)