BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002813
(877 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana
GN=PUB1 PE=1 SV=1
Length = 1038
Score = 1386 bits (3588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/876 (77%), Positives = 766/876 (87%), Gaps = 12/876 (1%)
Query: 1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1 MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59
Query: 61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
MERVL+DRLSG+F AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+
Sbjct: 60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119
Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
VSYCRIHL NPD FG+++ + ++N K ++SP+LP IFAEVG G +D FG ++SSG
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178
Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238
Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
KSLV+H+WW+P+ Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298
Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
PADLLSSF+TIK M LY L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358
Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
+SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F RL L LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418
Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
+EWI K A A+ + + E++LLQS+EATSSS AS G+ A +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469
Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529
Query: 540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct: 530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589
Query: 600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct: 590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649
Query: 660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709
Query: 720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct: 710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769
Query: 780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct: 770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829
Query: 840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQV 875
MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQ+
Sbjct: 830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQI 865
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3
Length = 1173
Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 205/723 (28%), Positives = 343/723 (47%), Gaps = 92/723 (12%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L F+ PL AL L
Sbjct: 369 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLESDY---FKYPLMALGELCET 425
Query: 236 PVG-----VKSLVNHQWWIPKSVYL-NGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G + + W+PKS+ +GR ++ S LG FF S + V +
Sbjct: 426 KFGKTHPMCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAE-----DDAKVVE 480
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 481 KYFS-----GPAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 534
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFY-SSR 403
++N N +A +Q + ++ G +NL V+ +L + K + +DP Y+F+ R
Sbjct: 535 LVNANMKKAQMQADDRLVSTDGFMLNLLWVLQQL------STKIKLETVDPTYIFHPRCR 588
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V+E + E SEP
Sbjct: 589 ITLPNDETRINATMEDVNERLT------------------------ELYGDQPPFSEPKF 624
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 625 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 667
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLV 578
+ Q S L + R + +++ + K C +A +L D ++ L+FY L+I ++
Sbjct: 668 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLL-DESFLRRCLNFYGLLIQLML 726
Query: 579 DLVG----GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFI 633
++ +PL P FA +PE +VED E L F + P+ L D + F+
Sbjct: 727 RILDPAYPDVTLPLNSEVPKVFAALPEFYVEDVAEFLFFIVQYSPQVLYEPCTQDIVMFL 786
Query: 634 IMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYV 693
++ + + YIRNPYL +K+VEV+ P + + E H +S + LV +L+K Y
Sbjct: 787 VVMLCNQNYIRNPYLVAKLVEVMFMTNPSVQPRTQKFFEMIENHPLSTKLLVPSLMKFYT 846
Query: 694 DIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLIND 753
D+E TG+ ++FYDKF IR++I+ + + LWQ +H + + ++ ++ ++N LIND
Sbjct: 847 DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLIND 904
Query: 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANED 813
+ +LLDESL + + ++ EM N +W++ P ++Q R E + R + LA E
Sbjct: 905 TTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATET 964
Query: 814 VSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLK 873
V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL
Sbjct: 965 VDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLD 1024
Query: 874 QVS 876
Q++
Sbjct: 1025 QLT 1027
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1
Length = 1302
Score = 266 bits (679), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 210/723 (29%), Positives = 348/723 (48%), Gaps = 92/723 (12%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L+ F+ PL AL L
Sbjct: 498 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDY---FKYPLMALGELCET 554
Query: 236 PVG----VKSLVNH-QWWIPKSVYLN-GRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G V +LV + W+PKS+ GR ++ S LG FF S + + V +
Sbjct: 555 KFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDV-----KVVE 609
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 610 KYFSG-----PAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 663
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS-SR 403
V+N N +A +Q + ++ G +N V+ +L + K + +DP Y+F+ R
Sbjct: 664 VVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQL------STKIKLETVDPTYIFHPRCR 717
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V++W+ E SEP
Sbjct: 718 ITLPNDETRVNATMEDVNDWLT------------------------ELYGDQPPFSEPKF 753
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 754 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 796
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLV 578
+ Q S L + R + +++ + K C +A +L D ++ L+FY L+I L+
Sbjct: 797 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLL-DESFLRRCLNFYGLLIQLLL 855
Query: 579 DLVG----GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFI 633
++ +PL P FA +PE +VED E L F + P+AL D + F+
Sbjct: 856 RILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQDIVMFL 915
Query: 634 IMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYV 693
++ + + YIRNPYL +K+VEV+ P + + E H +S + LV +L+K Y
Sbjct: 916 VVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPSLMKFYT 975
Query: 694 DIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLIND 753
D+E TG+ ++FYDKF IR++I+ + + LWQ +H + + ++ ++ ++N LIND
Sbjct: 976 DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLIND 1033
Query: 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANED 813
+ +LLDESL + + ++ EM N +W++ P ++Q R E + R + LA E
Sbjct: 1034 TTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATET 1093
Query: 814 VSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLK 873
V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL
Sbjct: 1094 VDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLD 1153
Query: 874 QVS 876
Q++
Sbjct: 1154 QLT 1156
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1
Length = 1010
Score = 246 bits (627), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 228/870 (26%), Positives = 388/870 (44%), Gaps = 127/870 (14%)
Query: 26 LNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLIN 85
LN ++ D YLE +L EG + + + ++ L+ RLS F YL+
Sbjct: 89 LNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSALLSRLST---TGNNTFSYLLQ 145
Query: 86 CYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEIN 145
+ + K++ KD+N ++ + K ++VSY I + PD F S +
Sbjct: 146 SWSFLYQYKKRLP--KDENQDFKIH-YLSLLKSLLVSYAGIVVMLPDTFNSETID----- 197
Query: 146 NSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLD----PI 201
AEV G +G P FL EF + + + LD P+
Sbjct: 198 ---------------LAEVLIGAEGI----------PLEFLSEFVQRFEHENLDELFIPV 232
Query: 202 LKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIE 261
L+ L +L+ ++NV + ++ +L LVS L W P + N IE
Sbjct: 233 LESL--SLKIGLMNVDTVQ--MNVMQIILQLVSLKPIALLLPKLPSWNPTN---NAGEIE 285
Query: 262 MTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDL 321
+ LG +S+L ++F DV + FS ++ R ++ SS +++K M L
Sbjct: 286 YKTFLG---RISSL---SVFTQ--DVASRYFSNSTERSAQNISSSISSLKLTMSTYQDVL 337
Query: 322 GDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCD 380
+ L++ +T RE+VL++ A V+N N R IQV S +N S V+ RL +
Sbjct: 338 FQIFNTLIRTSTSLRESVLDFFAMVVNANHKRQSIQVNHFDITSDACMLNFSHVLSRLSE 397
Query: 381 PFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDG 440
PFLD +K D++ +Y + R+D++ T L+A + + +K A+GS +F
Sbjct: 398 PFLDIGCSKIDRVQVEYFRRNPRVDIKEETKLNADQKASESFYSK----PAEGSNNF--- 450
Query: 441 ENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFS 500
I + FF+ + G+ F
Sbjct: 451 ---------------------------------------ISDIFFLNLAFHHYGVNATFK 471
Query: 501 DFKHLVQDISRAEDTLATLKATQ----GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQI 556
+ LVQ I +E L+ Q G +++L +++R+++ ++L CYE +
Sbjct: 472 ALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVHCYEIML 531
Query: 557 LRDGDLIQHALSFYRLMIVWLVDLVGG---------FKMPLPDTCPMEFACMPEHFVE-- 605
+ D + SF + +WL L G +P + P F C+PE+F+E
Sbjct: 532 TQTSD-TSRSFSFLNFVAIWLSRLADGQSSTYPKMPLSLPFNENAPEAFKCLPEYFIETI 590
Query: 606 -DAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRS 664
D M L S L L+ F + F+ YI+NPYLR+K+ E+L +
Sbjct: 591 TDYMLSLFKTSSSTLTLHS--LEPLCEFCVSFLTQANYIKNPYLRAKLAEILYFGVQTHV 648
Query: 665 GSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQV 724
G S + +++ +L+ L+ Y++IE TG TQFYDKFNIR I E+ +W+
Sbjct: 649 GRSELLLDVVRTSKVATRWLLPALMAFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQ 708
Query: 725 PSHRNAWRQIAKEEEKGV--YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWE 782
P++ + ++ +E++ + ++ F+ ++ND+ YLLDE+L K+ E+ +++ +++ A
Sbjct: 709 PAY---FGKLEQEQKTNLPFFVKFVALMLNDATYLLDEALLKLTEIHNLQSLLAD-AISN 764
Query: 783 RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLN 842
Q QE + E +L NE + ML + I F E+++R+A+MLN
Sbjct: 765 SNSNQNVQESQSNLAAAERQASTYCQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLN 824
Query: 843 YFLLQLVGPQRKSLTLKDPEKYEFRPKQLL 872
Y L L GP+ +L ++DP KY F K LL
Sbjct: 825 YNLQALCGPKCSNLKVEDPTKYHFNAKTLL 854
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2
SV=2
Length = 1066
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 232/931 (24%), Positives = 397/931 (42%), Gaps = 170/931 (18%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + L R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVELEDQDWLDMGNVEQALFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 241 -HFEDVTE--------FLEEVIEALILDEEVRTFSEVMIPVFDILLGRIKDLELCQILLY 291
Query: 225 P-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKS 283
L LLY K V ++ PK NG++ + T +LG ++S L
Sbjct: 292 AYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILNISCL------LK 341
Query: 284 QPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLE 340
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 342 TPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILS 401
Query: 341 YLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKID 394
+L ++ N+ R I + AS F+NL A +L+LC PF ++ +
Sbjct: 402 WLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFN 461
Query: 395 PKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSS 454
P Y +L L+ ++ +G D E L+
Sbjct: 462 PTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI--------- 492
Query: 455 GGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAED 514
EP P Y + E +T L LG + + Q++ R +
Sbjct: 493 PAVQEPKFPQN-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRLQ- 540
Query: 515 TLATLKATQGQTPSSQ-LNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLM 573
+A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+ M
Sbjct: 541 -VAWRDAQQSSSPAADSLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQVSM 591
Query: 574 IVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVL 625
V LV L G PLPD A +PE F ++ + LIF R D +L
Sbjct: 592 AVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---DDIL 647
Query: 626 ------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQ 678
L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F +
Sbjct: 648 ETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKR 707
Query: 679 MSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQ 733
+ + L L+K++VDIEFTG QF KFN R + +L Y+W ++R + +
Sbjct: 708 VFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKD 767
Query: 734 IAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA 786
+A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 768 LADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTP 826
Query: 787 QERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLL 846
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNYFL
Sbjct: 827 EARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQ 886
Query: 847 QLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877
LVGP+ +L +KD +++F+P+QL+ + T
Sbjct: 887 HLVGPKMGALKVKDFSEFDFKPQQLVSDICT 917
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1
SV=2
Length = 1066
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 232/931 (24%), Positives = 396/931 (42%), Gaps = 170/931 (18%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + L R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVELEDQDWLDMSNVEQALFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 241 -HFEDVTE--------FLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQILLY 291
Query: 225 P-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKS 283
L LLY K V ++ PK NG++ + T +LG +S L
Sbjct: 292 AYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILSISCL------LK 341
Query: 284 QPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLE 340
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 342 TPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILS 401
Query: 341 YLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKID 394
+L ++ N+ R I + AS F+NL A +L+LC PF ++ +
Sbjct: 402 WLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFN 461
Query: 395 PKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSS 454
P Y +L L+ ++ +G D E L+
Sbjct: 462 PTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI--------- 492
Query: 455 GGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAED 514
EP P Y + E +T L LG + + Q++ R +
Sbjct: 493 PAVQEPKFPQN-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRLQ- 540
Query: 515 TLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLM 573
+A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+ M
Sbjct: 541 -VAWRDAQQSSSPAADNLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQVSM 591
Query: 574 IVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVL 625
V LV L G PLPD A +PE F ++ + LIF R D +L
Sbjct: 592 AVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---DDIL 647
Query: 626 ------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQ 678
L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F +
Sbjct: 648 ETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKR 707
Query: 679 MSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQ 733
+ + L L+K++VDIEFTG QF KFN R + +L Y+W ++R + +
Sbjct: 708 VFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKD 767
Query: 734 IAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA 786
+A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 768 LADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTP 826
Query: 787 QERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLL 846
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNYFL
Sbjct: 827 EARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQ 886
Query: 847 QLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877
LVGP+ +L +KD +++F+P+QL+ + T
Sbjct: 887 HLVGPKMGALKVKDFSEFDFKPQQLVSDICT 917
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a
PE=2 SV=1
Length = 1066
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 231/930 (24%), Positives = 398/930 (42%), Gaps = 168/930 (18%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + + R+
Sbjct: 87 MIQRIFLITLD----NSDPNLKSGNGIPSRCVYLEEMAVELEDQDWLDMSNVEQAIFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLISMTSSATLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++ Q
Sbjct: 241 -HFEDVTE--------FLEEVIEALLLDEEVRTFPEVMIPVFDILLGRIKDLELC---QI 288
Query: 225 PLRALLYLVSFPVGVKSL--VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFK 282
L A L ++ + K + V ++ PK NG++ + T +LG ++S L
Sbjct: 289 LLYAYLDILLYFTRQKDMAKVFLEYIQPKDPS-NGQMYQKT-LLGVILNISCL------L 340
Query: 283 SQPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVL 339
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 341 KTPGVVENHGFFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHGIL 400
Query: 340 EYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKI 393
+L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 401 FWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTF 460
Query: 394 DPKYVFYSSRLDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATS 452
+P Y D R + ++H D E L+
Sbjct: 461 NPTYCVLKDLNDEERKIKSVHMRG---------------------LDKETCLI------- 492
Query: 453 SSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRA 512
EP P Y + E +T L LG + + Q++ R
Sbjct: 493 --PAVQEPVFPQS-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRL 539
Query: 513 EDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYR 571
+ +A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+
Sbjct: 540 Q--VAWRDAQQSSSPAADNLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQV 589
Query: 572 LMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKAL-- 621
M V LV L G PLPD A +PE F ++ + LIF R + +
Sbjct: 590 SMAVLLVQLAIGNEGSQPIELSFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFAEDILE 648
Query: 622 -DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQM 679
L+ ++FI +F S + ++NP+LR+K+ EVL MP + S +++F ++
Sbjct: 649 TSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPSPLVSSVFHRKRV 708
Query: 680 SLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQI 734
+ L L+K++VDIEFTG QF KFN R + +L Y+W S+R + + +
Sbjct: 709 FCNFPYAPQLSEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDSYRESIKDL 768
Query: 735 AKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQ 787
A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EWE +
Sbjct: 769 ADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWESLTPE 827
Query: 788 ERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQ 847
R+E+ + R ++NE + L+F + +I + F+ P + ER+ SMLNYFL
Sbjct: 828 ARREKEAGLQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFLQH 887
Query: 848 LVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877
LVGP+ +L +KD +++F+P+QL+ + T
Sbjct: 888 LVGPKMGALKVKDFSEFDFKPQQLVSDICT 917
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1
Length = 1067
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 228/934 (24%), Positives = 393/934 (42%), Gaps = 176/934 (18%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDMR-LSRDLMERV 64
++++IFL+TL+ ++DP R YLE A +L + DM + + + R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVDLEDQDWLDMNNVEQAVFTRL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGEKHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + ++ + A +GG
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVD------------LMVEAILGGHF 242
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD--------TLDPILKGLYENLRGSVLNVSALG 220
+ FL E E D + P+ L ++ L L
Sbjct: 243 ESVAE-----------FLDEVIEALILDEEVRTFPEVMIPVFDILSSRIKDLELCQILLY 291
Query: 221 NFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAI 280
+ L LLY K V+ +I NG++ + T +LG ++S L
Sbjct: 292 AY---LDILLYFTKQKDMAKVFVD---YIQPKDPSNGQMYQKT-LLGVILNISCL----- 339
Query: 281 FKSQPDV--GQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTREN 337
P V F S P ++ I M ++ + +L LL+ + +T+
Sbjct: 340 -LKTPGVIENHGYFLNPSRSSPQEIKVQEANIHQFMARYHEKIYQMLKNLLQLSPETKHC 398
Query: 338 VLEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRD 391
+L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 399 ILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLL 458
Query: 392 KIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451
+P Y +L L+ ++ +G D E L+
Sbjct: 459 TFNPTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI------ 492
Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISR 511
EP P Y + E +T L LG + + Q++ R
Sbjct: 493 ---PAVQEPKFPQN-----------YNLVTENLVLTEYTLYLGFHRLHDQMVKINQNLHR 538
Query: 512 AEDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFY 570
+ +A A Q +P++ L + R+ + LS++ + E Q+L Q+ L+
Sbjct: 539 LQ--VAWRDAQQSSSPAADNLREQFERL-MTVYLSTKTAMT-EPQML------QNCLNLQ 588
Query: 571 RLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALD 622
M V LV L G PLPD A +PE F ++ + LIF R D
Sbjct: 589 VSMAVLLVQLAIGNEGSQLMELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---D 644
Query: 623 GVL------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFE 675
+L L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F
Sbjct: 645 DILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHMDQTPNPLVSSVFH 704
Query: 676 GHQMSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNA 730
++ + L L+K++VDIEFTG QF KFN R + +L+Y+W ++R +
Sbjct: 705 RKRVFCNFPYASHLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILKYMWGTDTYRES 764
Query: 731 WRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWER 783
+ +A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 765 IKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDN 823
Query: 784 RPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNY 843
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNY
Sbjct: 824 LTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNY 883
Query: 844 FLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877
FL LVGP+ +L +KD +++F+P+QL+ + T
Sbjct: 884 FLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICT 917
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3
Length = 961
Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 219/905 (24%), Positives = 383/905 (42%), Gaps = 140/905 (15%)
Query: 13 IEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGN 72
IEDI+ + TTD Y L +E + +G L D ++ +L+ +L+ N
Sbjct: 4 IEDIL----------QITTDPSDTRGY-SLLKSEEVPQGS--TLGVDFIDTLLLYQLTEN 50
Query: 73 FPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPD 132
+ PF YL +C+RR + K+I K+K L + ++ ++++ Y + L +
Sbjct: 51 -EKLDKPFEYLNDCFRRNQQQ-KRI--TKNKPNAESLHSTFQEIDRLVIGYGVVALQIEN 106
Query: 133 FFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEE 192
F + NY + G + + T SQ + E
Sbjct: 107 FCMNGAFINY---------------------ITGIVSNVNSYTDFLSQI---IQRAILEG 142
Query: 193 ADFDTLDPILKGLYENLRGSV----LNVSALGNFQQPLRALLYLVSF-PVGVKSLVNHQW 247
D L+ + L E V LN S + N L V+F P+ +
Sbjct: 143 TALDLLNAVFPTLLEYCNKHVSHFDLNESVIYN--NVLTIFELFVTFKPIAEIFTKIDGF 200
Query: 248 WIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSF 307
+ S + E +ILGP +S + + V + + + R
Sbjct: 201 FADYSC--KPQDFERKTILGPILSLSPI--------EAAVAIRNYGDNLLRSKQQTAMIH 250
Query: 308 TTIKTVMRGLYKDLGDVLLALLKNT-DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSG 366
+++ + + L ++ L++ + ++R +++ Y A + N+N R +S+G
Sbjct: 251 ESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNG 310
Query: 367 MFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSR-LDLRSLTALHASSEEVSEWINK 425
N++ +++R PFLD + K DKID Y S +DL T L++ +E + +K
Sbjct: 311 FMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK 370
Query: 426 GNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFF 485
N AD SK FI +CFF
Sbjct: 371 -NRKTAD------------------------------------------SKPNFISDCFF 387
Query: 486 MTARVLNLGL-------------LKAFSDFKHLVQDISRAEDTLATLKATQ--------G 524
+T L+ GL +KA + V+ I+ D A Q
Sbjct: 388 LTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQLSKMEKALK 447
Query: 525 QTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGF 584
T S + L+ + ++L + +C + L +H F ++ + + D +G
Sbjct: 448 TTESLRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVE 507
Query: 585 KMPLPD----TCPMEFACMPEHFVEDAMELLIFASRIPKA--LDGVLLDDFMNFIIMFMA 638
+ D P+ F PE VE + ++ S+ + L F+ F M +
Sbjct: 508 NVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLR 567
Query: 639 SPKYIRNPYLRSKMVEVLNCW-MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEF 697
P+ + NP+L+ K+V++L+ MP S +FE ++ + L+ LL YV +E
Sbjct: 568 CPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEK 627
Query: 698 TGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDS 754
TGS +QFYDKFN R++I+ +LE L+ ++PS++N W+ + ++ F+ ++ND
Sbjct: 628 TGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQS---QNNADFFVRFVARMLNDL 684
Query: 755 IYLLDESLNKILELKVIEAEMSNTAEWE--RRPAQERQERTRLFHSQENIIRIDMKLANE 812
+LLDE L+ + E+ I+ E+ N A R ++++ +TRL S + LA++
Sbjct: 685 TFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRL-ASASRQAKSSCGLADK 743
Query: 813 DVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLL 872
+ + S+ I A F+ PE++ R+ASMLNY L LVGP+ L +KDP+ Y F PK LL
Sbjct: 744 SMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLL 803
Query: 873 KQVST 877
K ++T
Sbjct: 804 KALTT 808
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans
GN=ufd-2 PE=2 SV=1
Length = 980
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 161/712 (22%), Positives = 303/712 (42%), Gaps = 103/712 (14%)
Query: 191 EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKS--------- 241
+E D D + ++ LR ++ N + +R +L +++ + ++
Sbjct: 192 DECDEDAITETFNPIFGILRSGIICQRFEDNKDEIVRQILRVMNLLLSIRLPSNGPRPLS 251
Query: 242 --LVNHQWWIPK-SVYLNGRVIEMTSILGPFFHV-----SALPDHAIFKSQPDVGQQCFS 293
LVN + ++P S + GR + S LGPFF + P+H +F + ++
Sbjct: 252 NLLVNREDFLPTPSEKIQGREFGLMSFLGPFFSYGLESSARRPNHRVFVDCEEDARKYDG 311
Query: 294 EASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRA 353
+T + I+T++ L +L L + +R L ++A +I+ N R
Sbjct: 312 SVNTEQKL-YFQRMDPIRTMLHQL-------MLPLASDQGSRNKTLRWIATIISTNDIRT 363
Query: 354 HIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALH 413
+P N +VM Y+F S ++DL + +
Sbjct: 364 RSHYDPSDVLCDHYMTNFLSVM---------------------YMF-SEKIDLSKIIVDY 401
Query: 414 ASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGG 473
I+K K D SG + S A RP
Sbjct: 402 PFLPSSLINISKETRLKMD--------------------ESGAVAFASQFADRP------ 435
Query: 474 KSKYPFICECFFMT---ARVLNLGLLKAFSDF----KHLVQDISRAEDTLATLKATQGQT 526
+Y F CFF+T R++ L+ S++ K L I+ ++ L T+ +
Sbjct: 436 -DEYHFSTVCFFLTIAAQRLVIPPLMNQISEYSRHLKELKHKINALKEKLNTVSGFERAE 494
Query: 527 PSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKM 586
+LN E + +L S+ LC + Q +D L+ ++ F + ++++L+
Sbjct: 495 VEKKLNYET----EHWKLMSRHLLCVKTQA-QDPALMASSMDFVDKQMKFILNLLCDNLD 549
Query: 587 ------PLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASP 640
LP F +PE+F+EDA++ IFA L D+++ + +
Sbjct: 550 LLGDDSQLPTEVSQMFCALPEYFLEDALDFYIFAISNGMKLLMERNADWISRLTVLFTQY 609
Query: 641 KYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGS 700
YI++P+L SK+V VL+ P + +M+ E L+ ++K Y D E G
Sbjct: 610 HYIKSPFLVSKLVRVLSSIQPPLWFNVVRL-------RMAQENLLMCMIKFYSDFEDNGD 662
Query: 701 HTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDE 760
FY+KFN+R NI +LE + + ++ + +A+E ++ F+N +IND+ + +DE
Sbjct: 663 ---FYEKFNVRGNIQYMLEKMEEDMFYKGKFMDMAREC-GAEFIRFVNMVINDATWCIDE 718
Query: 761 SLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFT 820
SL+ + + +E +M+N EW+ + R + ++ + ++ + A ++ +L
Sbjct: 719 SLSGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEAKRKVKGWLGTAKSNLKLLLSI 778
Query: 821 SEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLL 872
+ PF P + ER+A+MLN+ L QL+G + L +KDP Y + P++ +
Sbjct: 779 TVNSPEPFRTPVLGERLAAMLNHNLSQLIGSKASELKVKDPRSYGWEPREFV 830
>sp|P33107|KAD_MICLU Adenylate kinase OS=Micrococcus luteus GN=adk PE=3 SV=1
Length = 205
Score = 36.6 bits (83), Expect = 0.82, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|C5CC42|KAD_MICLC Adenylate kinase OS=Micrococcus luteus (strain ATCC 4698 / DSM
20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 /
VKM Ac-2230) GN=adk PE=3 SV=1
Length = 205
Score = 36.6 bits (83), Expect = 0.82, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|Q7M8Y8|SYFB_WOLSU Phenylalanine--tRNA ligase beta subunit OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=pheT PE=3 SV=1
Length = 786
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 264 SILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRP 300
S++ PF H+SA+P I+K+ D+G + S S R P
Sbjct: 6 SLINPFVHLSAIPTQRIYKTLNDIGLEVDSFHSLRAP 42
>sp|P10250|SECY_MYCCT Protein translocase subunit SecY OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=secY PE=3 SV=2
Length = 482
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 731 WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQ 790
W + EE + LNF+I S++L L ++ + N AE + P Q Q
Sbjct: 233 WVSNSGEEANIFFSGLLNFMIYISVFL----------LVILSVVIMNEAE-RKIPIQ--Q 279
Query: 791 ERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERV 837
+ L S E+ + +KL N V + F S I P + ++IE V
Sbjct: 280 TGSGLTDSSEHTPYLPLKLNNAGVIPVIFASAIISTPITISQIIEAV 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,546,287
Number of Sequences: 539616
Number of extensions: 13403876
Number of successful extensions: 67059
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 66631
Number of HSP's gapped (non-prelim): 346
length of query: 877
length of database: 191,569,459
effective HSP length: 126
effective length of query: 751
effective length of database: 123,577,843
effective search space: 92806960093
effective search space used: 92806960093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)