Query 002813
Match_columns 877
No_of_seqs 174 out of 294
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 11:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10408 Ufd2P_core: Ubiquitin 100.0 3E-139 7E-144 1246.5 52.2 550 266-877 1-572 (629)
2 COG5113 UFD2 Ubiquitin fusion 100.0 6E-131 1E-135 1088.6 48.1 760 11-877 3-779 (929)
3 KOG2042 Ubiquitin fusion degra 100.0 3E-125 6E-130 1111.5 42.8 736 40-877 52-795 (943)
4 KOG4692 Predicted E3 ubiquitin 95.4 2.5 5.3E-05 47.0 20.9 232 593-852 19-289 (489)
5 PF11672 DUF3268: Protein of u 33.0 70 0.0015 30.1 4.5 42 313-354 58-100 (102)
6 KOG4253 Tryptophan-rich basic 26.2 3.3E+02 0.0071 27.6 8.0 104 500-615 44-147 (175)
7 PF15290 Syntaphilin: Golgi-lo 25.5 2.5E+02 0.0055 31.0 7.7 72 488-560 70-143 (305)
8 PF04420 CHD5: CHD5-like prote 24.7 95 0.0021 31.4 4.2 59 496-554 36-94 (161)
9 PF04664 OGFr_N: Opioid growth 18.5 2E+02 0.0042 30.7 5.2 54 302-355 130-188 (213)
10 COG5095 TAF6 Transcription ini 16.0 4.5E+02 0.0098 29.6 7.2 74 626-699 253-344 (450)
No 1
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=100.00 E-value=3.4e-139 Score=1246.53 Aligned_cols=550 Identities=42% Similarity=0.778 Sum_probs=469.2
Q ss_pred cccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHH
Q 002813 266 LGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAE 344 (877)
Q Consensus 266 LGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~ 344 (877)
|||||++|++|++ +|++++.||.++.+++++++++++.+||+.++.+++.||+|+++||| ++++|+++|+|||.
T Consensus 1 LGp~l~~S~~~~~-----~~~~~~~~F~~~~~~~~~~~~~~~~~lr~~l~~~~~~l~~i~~~LLr~s~~sR~~~L~w~a~ 75 (629)
T PF10408_consen 1 LGPFLSLSPLPDD-----QPEVAEQFFSNPSKRNQQDVESSISSLRQELQNIQDQLHQIFKSLLRASPESRERVLSWFAQ 75 (629)
T ss_dssp THHHHT--TTS--------HHHHHHHTTT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCCCeecCCCCCC-----ccHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Confidence 8999999999988 48999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHhchhhhcc--ccCCCccCChhhHHHHHHHHHHhhhhhccCCcccccccCccc----ccc--CCccCCCCcccccCCH
Q 002813 345 VINRNSSRAHI--QVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKY----VFY--SSRLDLRSLTALHASS 416 (877)
Q Consensus 345 vl~~N~~R~k~--~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y----~~~--~~~id~~~eTri~a~~ 416 (877)
|++.|++|+|| ++|+..+||||||+|+++||+|||+||+|+..+|++||||+| +.+ ++++|+++||||++++
T Consensus 76 ~l~~N~~R~k~~~~~~~~~~aSDGFmlNl~~VLl~L~~Pf~~~~~~K~~kID~~Y~~~~~~~~~~~~vd~~~eT~l~~~~ 155 (629)
T PF10408_consen 76 ILNANAKRAKMWLQVDPRTVASDGFMLNLTAVLLRLCQPFMDPSFSKIDKIDPDYCAHPLLRPRNSRVDISEETRLNATE 155 (629)
T ss_dssp HHHT-GGGGSS--S--GGGS--HHHHHHHHHHHHHHHGGGGSTT-TTGGGS-TTT-----TSS--SSS--TT--BSSB-H
T ss_pred HHHhchhhhhhhhccccccCCCcHHHHHHHHHHHHHHHhhhhhhhhhHhhcCcchhhhhhccccccccCcccccccCCCh
Confidence 99999999999 999999999999999999999999999999999999999999 455 7899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhchH
Q 002813 417 EEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLL 496 (877)
Q Consensus 417 ~e~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitecFFLT~~~lhlG~~ 496 (877)
+++++|++... ..+++||||||||||++++|||+.
T Consensus 156 ~e~~~~~~~~~---------------------------------------------~~~~~nFiTe~FFLT~~a~hlg~~ 190 (629)
T PF10408_consen 156 EESEEWYEDLP---------------------------------------------NPGPPNFITECFFLTLRALHLGLL 190 (629)
T ss_dssp HHHHHHHHHCT---------------------------------------------TSTS--HHHHHHHHHHHHHHHTHH
T ss_pred hHHhhhhcccc---------------------------------------------cCCCCCchHHHHHHHHHHHHHhHH
Confidence 99999997542 223489999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHHHHHHHHHH
Q 002813 497 KAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVW 576 (877)
Q Consensus 497 ~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~F~~~~~~w 576 (877)
|++++|+++.|+++++++.++++++. ..+++++++++.+.+.++|++| +|+||+++.++++|+++++.|
T Consensus 191 ~~~~~~~~~~r~l~~lq~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~-~L~~p~~~~~~~~F~~~~~~w 259 (629)
T PF10408_consen 191 PAIQRYKRLLRELRRLQRELEELEAS----------AQLKRLKEQLDKLMSEKLSLEA-VLLDPDFLSRCLQFYNFVAQW 259 (629)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988632 5678999999999999999999 799999999999999999999
Q ss_pred HHHHhc---------CCCCCCCCCCCcccccchhHHHHhHHHHHHHHhhc---CccccccchhHHHHHHHHHhCCCCCcc
Q 002813 577 LVDLVG---------GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI---PKALDGVLLDDFMNFIIMFMASPKYIR 644 (877)
Q Consensus 577 L~rl~~---------~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~fi~r~---p~~l~~~~~~~li~~~i~~l~~~~~ik 644 (877)
|+++++ +.++|||+++|+.|++||||+||||+||+.|+.|+ |..+.+..++++++|||+||++|+|||
T Consensus 260 L~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~~~~~~l~~~~~~~l~~f~i~fm~s~~~ik 339 (629)
T PF10408_consen 260 LLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFNNSPDLLSSQDLDELVTFCITFMGSPEYIK 339 (629)
T ss_dssp HHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTSTT-TTTT-T-THHHHHHHHHHHHH-TTS--
T ss_pred HHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhcCChhhhhhhhHHHHHHHHHHHhCChhhcC
Confidence 999993 36789999999999999999999999999999998 888899999999999999999999999
Q ss_pred ChhhhhhHHHHHHhhcCCCC-CCcchhHHhhhhchhhHHHHHHHHHHHhHhhhccCCCccccccchhhHHHHHHHHHHhC
Q 002813 645 NPYLRSKMVEVLNCWMPRRS-GSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQ 723 (877)
Q Consensus 645 NPhLraklvevL~~~~p~~~-~~~~~~~~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~I~~Ilk~LW~ 723 (877)
|||||||+||+|+.++|... +.++.+.++|++||++++||+||||+||||||+||+|+|||||||+||+|++||++||+
T Consensus 340 NP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE~Tg~~~qfydKFn~R~~i~~il~~lw~ 419 (629)
T PF10408_consen 340 NPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVEKTGASTQFYDKFNIRYHISQILKYLWK 419 (629)
T ss_dssp -HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCccchhcccchhhHHHHHHHHcC
Confidence 99999999999999888766 55677888999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCHHHHHHHHHHHHHhhhhh
Q 002813 724 VPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENII 803 (877)
Q Consensus 724 ~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~~l~~~er~~ 803 (877)
+|.||++|+++++++ +++|+|||||||||+||||||||++|++||++|.+++|.++|+++++|+|+++++.++++||+|
T Consensus 420 ~~~~r~~~~~~~~~~-~~~F~rFvn~liND~~~llDE~l~~L~~I~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~ 498 (629)
T PF10408_consen 420 NPEYREQFIKEAKEN-PPLFVRFVNMLINDTTFLLDESLSKLKEIKELQEEMADQSEWNALSQEERQEKESQLEQAERQA 498 (629)
T ss_dssp -HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999985 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhcCcccCCccccCCcccCCChHHHHhhhcC
Q 002813 804 RIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877 (877)
Q Consensus 804 rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~LvGPkc~~LKVknpekY~F~Pk~lL~~i~~ 877 (877)
|||++||+||++||++||+++|+||++||||||||+||||||++||||||++||||||+||||+||+||.+||+
T Consensus 499 rs~~~l~~~t~~~l~~lt~~~~~~Fl~~elv~RlA~MLn~~L~~L~Gpk~~~LkVk~~~~y~F~P~~ll~~i~~ 572 (629)
T PF10408_consen 499 RSYLQLANETLKMLNYLTSEIPEPFLRPELVDRLAAMLNYNLDQLVGPKCSELKVKNPEKYGFDPKELLSQIVD 572 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHcCCchhcccCCChhhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-131 Score=1088.56 Aligned_cols=760 Identities=21% Similarity=0.302 Sum_probs=667.9
Q ss_pred HHHHHHHHHHhheeeccCCcCCCCCCeeehhhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChHhHHHHHHH-H
Q 002813 11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYR-R 89 (877)
Q Consensus 11 ~~~~~~~l~~if~vTl~~~~~~~~~~~~~L~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~-R 89 (877)
.+|.+++-..++++|.+|+ +.+-++| +.++...+|. .|..+.+|.+|+.+|+.. ..++|.||.+||+ +
T Consensus 3 ~~~M~~ie~~~l~it~~p~----D~~~y~l--fk~~e~~~gS--~l~~n~~d~~LL~~l~~~---~nn~fsYl~~s~~fl 71 (929)
T COG5113 3 YPGMNRIELYELFITGMPA----DMDPYEL--FKEAECIRGS--YLTNNSSDNILLTLLPRY---KNNTFSYLQESAKFL 71 (929)
T ss_pred CcccchhhhhhhhcccCcc----ccchhhh--cchhhccccC--ccccccHHHHHHHHcccc---CCCchHHHHHHHHHH
Confidence 4699999889999999998 4455777 4455555565 567779999999999986 4889999999999 5
Q ss_pred HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCC
Q 002813 90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID 169 (877)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~ 169 (877)
.+..+|.. + .+.....+..-++.|.+++++|+|.+..+||-|.... ..++.-+...+
T Consensus 72 ~q~~kri~-k--n~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~FN~e~---------------i~~ieg~~~~~----- 128 (929)
T COG5113 72 IQTIKRIV-K--NPEMAGSAHSPVALIPLLTNTYGGSVFDVMECFNSEK---------------ISEIEGMARKM----- 128 (929)
T ss_pred HHHHHHhc-C--CccccccccchHHHHHHHHhhccceEeehHhhcchhH---------------HHHHHHHHHhc-----
Confidence 55444443 3 2333344556889999999999999999999993321 11222222211
Q ss_pred CCCCCCCCCCCCChHHHHHHHHh--hccCChHHHHHHHHHHHHHHhhhcCcCccchhHHHHHHHhhCChhHHHhhhcCCc
Q 002813 170 GFGNSTSSGSQCPPGFLKEFFEE--ADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQW 247 (877)
Q Consensus 170 ~~~~~~~~~~~~~~~Fl~eli~~--~~~d~~~~if~~i~~~l~~~~~~~~~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~ 247 (877)
.+|-.|+.+++.| ++...++.+|.++++.+....+-+........++.++..|++.||||.++.+.|.
T Consensus 129 ----------~~p~~fls~f~qr~l~e~~nld~lF~~~LE~l~~~~g~~~~dtV~~NVm~I~~~lv~~kPia~v~~k~p~ 198 (929)
T COG5113 129 ----------LLPMIFLSSFKQRQLDEASNLDNLFTSALEALTGLHGVLEEDTVLKNVMEIYWGLVNTKPIADVILKFPI 198 (929)
T ss_pred ----------ccHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhcccchHHHHHHHHHHHHHHHhcCccHHHHhhcCcc
Confidence 1677999999999 4666799999999999988877666533345589999999999999999999999
Q ss_pred cCCCccCCCchhhhhhcccccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002813 248 WIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLA 327 (877)
Q Consensus 248 f~p~~~~~~G~~~E~~SlLGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~ 327 (877)
|.|+. .+-+||.+|+|||+.++|++ .-+||-.+|++...|+.+.+..+..++|.+++.+++.||+|+++
T Consensus 199 ~~~t~---~p~~fe~kt~lG~i~sls~~--------~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~ 267 (929)
T COG5113 199 YSGTN---FPCGFEYKTLLGFIESLSYK--------KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHS 267 (929)
T ss_pred cCCCC---CCCCCcceeecccccccchh--------hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99964 33479999999999999999 46788999999888999999999999999999999999999999
Q ss_pred Hhc-ChhhHHHHHHHHHHHHHhchhhhccccCCCccCChhhHHHHHHHHHHhhhhhccCCcccccccCccccccCCccCC
Q 002813 328 LLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDL 406 (877)
Q Consensus 328 Llr-~~~sRe~vL~w~a~vl~~N~~R~k~~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~~~id~ 406 (877)
|+| +.+.|+.+++|||+|+|.||+|++.++......|||||.|++.||.||++||+|..++|||+||..|++ ++|||+
T Consensus 268 lvr~S~~lr~~~~~yfa~v~n~nh~R~~~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~YFn-NP~vDi 346 (929)
T COG5113 268 LVRSSKELRANFMKYFAKVINVNHERSKTIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIYFN-NPRVDI 346 (929)
T ss_pred HHhccHHHHHHHHHHHHHHhccchhhccccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHhhc-CCcccc
Confidence 999 789999999999999999999999999999999999999999999999999999999999999999999 779999
Q ss_pred CCcccccCCHHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHH
Q 002813 407 RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFM 486 (877)
Q Consensus 407 ~~eTri~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitecFFL 486 (877)
++|||+|+|+++++.||.+ +.++++||||+||||
T Consensus 347 k~ETklN~d~k~~dsFy~K----------------------------------------------~Ae~s~NFISD~FFl 380 (929)
T COG5113 347 KEETKLNVDEKSLDSFYTK----------------------------------------------PAEGSNNFISDIFFL 380 (929)
T ss_pred ccchhcchhhhhhhccccC----------------------------------------------ccccCCccchhhHHh
Confidence 9999999999999999952 255688999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHH
Q 002813 487 TARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQT--PSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQ 564 (877)
Q Consensus 487 T~~~lhlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~ 564 (877)
+++.+|||+++++.--+++.+.|+.++++++....... | ...++.+++.|+++.++...+...|+++ .|...++..
T Consensus 381 ~lt~~HyGv~~tf~~~ek~g~~IrkLKE~le~e~~~~~-gs~~At~lTaqlsrme~~lk~~~S~~~al~g-fl~~tsl~~ 458 (929)
T COG5113 381 YLTKIHYGVNATFTSCEKFGEYIRKLKESLEYECRLLD-GSFQATRLTAQLSRMEAYLKGIDSKMSALNG-FLFMTSLFA 458 (929)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhhhhHHhHHHHHHHHHhhhHHHHHHHHH-HHHHhhhhh
Confidence 99999999999999999999999988888875432111 2 1334578899999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHHHhcC--------CCCCCCCCCCcccccchhHHHHhHHHHHHHHhhc--CccccccchhHHHHHHH
Q 002813 565 HALSFYRLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMNFII 634 (877)
Q Consensus 565 ~~~~F~~~~~~wL~rl~~~--------~~lPLp~~~p~~f~~lPE~~iEdi~d~~~fi~r~--p~~l~~~~~~~li~~~i 634 (877)
+.+.|.++++.||.|+++| .++|+-+.+|.+|+|+|||+||++++|...+.++ ..++- ..++++++||+
T Consensus 459 ~~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif~-~~L~~l~Ef~~ 537 (929)
T COG5113 459 DEFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIFK-KELEPLCEFVK 537 (929)
T ss_pred hccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchhh-ccccchhhhhh
Confidence 9999999999999999987 3466667899999999999999999999999887 33333 34999999999
Q ss_pred HHhCCCCCccChhhhhhHHHHHH-hhcCCCCCCcchhHHhhhhchhhHHHHHHHHHHHhHhhhccCCCccccccchhhHH
Q 002813 635 MFMASPKYIRNPYLRSKMVEVLN-CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHN 713 (877)
Q Consensus 635 ~~l~~~~~ikNPhLraklvevL~-~~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~ 713 (877)
+++++|++||||||++|++++|+ +.+|.+..++|.+.++|...+++.++|+||||.|||+||+||+|+|||||||+||.
T Consensus 538 ~vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqStqfydkfNirf~ 617 (929)
T COG5113 538 IVLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQSTQFYDKFNIRFI 617 (929)
T ss_pred hhcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcccceeeeccceee
Confidence 99999999999999999999997 57777766678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHhcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCHHHHHHHH
Q 002813 714 IAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERT 793 (877)
Q Consensus 714 I~~Ilk~LW~~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~ 793 (877)
|+.+++.+|+.|.|.+++.++.+.| -++||||...|+||+||||||+|.+|.++|++|.+++|....+ ...|+-+|.+
T Consensus 618 ic~~~~~~yK~Psy~~~L~~~~~tN-~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s-n~~e~~~elq 695 (929)
T COG5113 618 ICMMKDFEYKQPSYSEGLSSIKDTN-LPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS-NISERIGELQ 695 (929)
T ss_pred hhHHHHHHhcCchhhhhhhhhhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC-chhhHHHHHH
Confidence 9999999999999999999998775 8999999999999999999999999999999999999876544 4456677889
Q ss_pred HHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhcCcccCCccccCCcccCCChHHHHh
Q 002813 794 RLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLK 873 (877)
Q Consensus 794 ~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~LvGPkc~~LKVknpekY~F~Pk~lL~ 873 (877)
..|+.++||||++++|+++++.||..++++||++|+.||||+|||+||||||+.||||||.+||||||++|+|+||.||+
T Consensus 696 ~~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~ 775 (929)
T COG5113 696 KSLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLR 775 (929)
T ss_pred HHHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 002813 874 QVST 877 (877)
Q Consensus 874 ~i~~ 877 (877)
.+++
T Consensus 776 ~~~~ 779 (929)
T COG5113 776 RMVM 779 (929)
T ss_pred HHHH
Confidence 8764
No 3
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-125 Score=1111.51 Aligned_cols=736 Identities=36% Similarity=0.561 Sum_probs=612.4
Q ss_pred hhhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChHhHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Q 002813 40 LELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKM 119 (877)
Q Consensus 40 L~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~R~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l 119 (877)
...+..++..+|.+.+++.. |...+.-..... ....++.|+..||.+.....++...+++ + +. .+
T Consensus 52 ~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~-~~-~~ 116 (943)
T KOG2042|consen 52 YELFSSDLPADGLSHRFNEA--ESDTLALCTEND-ALNILFIYLYRCKSELSQYKRKECRKPT----------L-EQ-NL 116 (943)
T ss_pred HHhccccccccCCccccchh--hhHHHHhhccch-HHHHHHHHHHHHHHHHHHHhHHHhcCcc----------h-hh-ch
Confidence 33333444444555545443 333333333322 2356788888888888766654422111 1 11 45
Q ss_pred HHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCCCCCCCCCCCCCCChHHHHHHHHhhccCChH
Q 002813 120 IVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLD 199 (877)
Q Consensus 120 ~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~Fl~eli~~~~~d~~~ 199 (877)
.++++.++...++.+..+... ... ..+....++..+. ..|...|..|+.++...++.|.++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~~--------~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~d~l~ 177 (943)
T KOG2042|consen 117 KLAGSSFVMITLGVLAPQLRL--------QPA-SLQDISGLLELMN----------SEGFARPLLFLLEVTEHFDLDALD 177 (943)
T ss_pred hhccchheeeehhhccchhhh--------hhh-hhhhHHHHHHHhh----------hhhcccchhHHHHHhhhhhhHHHH
Confidence 566666666555555433210 000 0111112222210 012235678999999999999999
Q ss_pred HHHHHHHHHHHHHh--hhcCcCccchhHHHHHHHhhCChhHHHhhhcCCccCCCccCCCchhhhhhcccccccccCCCCC
Q 002813 200 PILKGLYENLRGSV--LNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPD 277 (877)
Q Consensus 200 ~if~~i~~~l~~~~--~~~~~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~f~p~~~~~~G~~~E~~SlLGp~f~lS~l~~ 277 (877)
.+|+|+++.+...+ .+.+....+..++.++..+++.||+|++++++|+|.|++ +|+++|+.|+|||||++|+++.
T Consensus 178 ~if~~vl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~kp~a~l~~~~~~~~p~~---~g~e~~~~s~LGpfls~S~~~~ 254 (943)
T KOG2042|consen 178 AIFNPVLERLESNLDILKLNVLVLENLVLLILLYFVSTKPIADLLVKLPDFLPPP---CGREFELKSFLGPFLSISCLPA 254 (943)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcCCCcHHHHHhhccccCCCC---CCcchhhhhhhccceeeeeccc
Confidence 99999997777444 333434457788999999999999999999999999996 7999999999999999999997
Q ss_pred CccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHhchhhhccc
Q 002813 278 HAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQ 356 (877)
Q Consensus 278 ~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~vl~~N~~R~k~~ 356 (877)
+++ .--.+|...+..+++.+. .+++..++ ....+|+|++++|+ |+++|+++|+|+|.|+++|++|++++
T Consensus 255 ~~~------~~y~~~~e~s~~~~~~~~---~s~~~~~~-~~~~~~~~v~~ll~~s~etr~~~L~~~a~vi~aN~~R~~~~ 324 (943)
T KOG2042|consen 255 APA------KRYGDFSERSRKNTSEVS---SSLLLYHQ-MDRKMLQIVKHLLRLSPETREKTLSYVANVINANDKRASIQ 324 (943)
T ss_pred cch------hhhcccchhhhcchHHHH---HHHHHHHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhccccccccc
Confidence 742 212334444455555554 44444555 55899999999999 89999999999999999999999999
Q ss_pred cCCCccCChhhHHHHHHHHHHhhhhhccCCcccccccCccccccCCccCCCCcccccCCHHHHHHHHhcCCCCCCCCCCC
Q 002813 357 VEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKH 436 (877)
Q Consensus 357 ~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~~~id~~~eTri~a~~~e~~~~~~~~~p~~~~~~~~ 436 (877)
+|+..++|||||+|+++||+|||+||+|+...|+|||||+|+....+.+..++|+++++.+|+. |++
T Consensus 325 ~~~~~~~sDgfm~Nl~~Vl~rls~p~~~~~~~~~~~~~p~y~~~~~~~~~~~~t~~~~~~~~t~-~~~------------ 391 (943)
T KOG2042|consen 325 VDPREVASDGFMLNLSAVLSRLSEPFLDPSIKKIDKIDPEYLINISKETRSKETELNADDKETC-FYD------------ 391 (943)
T ss_pred CCHHHhhchHHHHHHHHHHHHhcccccccccccccccChHHhcCccHhhhhhhhhhccchhhhh-ccC------------
Confidence 9999999999999999999999999999999999999999999888899999999999988877 773
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 002813 437 FSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTL 516 (877)
Q Consensus 437 ~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitecFFLT~~~lhlG~~~~~~~~~~l~~~i~~~~~~l 516 (877)
.++++||+|||||||+++||+|+.|++..|.++.+.|.+++..+
T Consensus 392 ------------------------------------~~~~~~F~t~cfFltl~~~~l~~~~~~~~~~~i~~~i~~l~~~i 435 (943)
T KOG2042|consen 392 ------------------------------------KPGEPNFPTECFFLTLAALHLGLLPTCSAFSEINRSLPELKPLI 435 (943)
T ss_pred ------------------------------------CCCCCCcchHHHHHHHHHHHhchhHHHHHHHHHHHHhHHHHHHH
Confidence 22578999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhc-C-CCC-CCCCCC
Q 002813 517 ATLKATQGQTP-SSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVG-G-FKM-PLPDTC 592 (877)
Q Consensus 517 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~F~~~~~~wL~rl~~-~-~~l-PLp~~~ 592 (877)
+..+..+++.. ......++.+++++++.+...+.|+++ .+.+|.+..+++.|+.+++.|++|+++ + ... ++|-.+
T Consensus 436 ~~lk~~~d~~~~a~~~~~~l~r~e~~lk~~~~~k~~~~~-~~~~p~l~~~~~~f~~~~s~~l~~~~~~~~~~~~~~p~~~ 514 (943)
T KOG2042|consen 436 ETLKVIADGYSVANLESADLTRLEKGLKLLSSIKPCLEI-TLLFPSLLQRCLNFYDFMSEGLLRVVDLEMPDSSTLPLNA 514 (943)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhh-hhcCcHHHHHhhccHHHHHHHHHHHhhccCCcccCCCCCC
Confidence 98877665422 233457889999999999999999999 789999999999999999999999997 2 222 455678
Q ss_pred CcccccchhHHHHhHHHHHHHHhhc-CccccccchhHHHHHHHHHhCCCCCccChhhhhhHHHHHHhhcCCCCCCcchhH
Q 002813 593 PMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATA 671 (877)
Q Consensus 593 p~~f~~lPE~~iEdi~d~~~fi~r~-p~~l~~~~~~~li~~~i~~l~~~~~ikNPhLraklvevL~~~~p~~~~~~~~~~ 671 (877)
|..|+|+|||++||+.+|+.|+.++ +..+.....+.+++|++.+|++++|+||||||||+|||++. |...++...+.
T Consensus 515 p~~f~~lPE~~vedi~efllf~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~ikNP~l~aKlvevl~~--~~~~~s~~~v~ 592 (943)
T KOG2042|consen 515 PCRFSALPEFFVEDIEEFLLFARKLGKMALDLQRLADIVTFLTVFMTSSMYIKNPYLRAKLVEVLSM--PKPSLSFNAVS 592 (943)
T ss_pred ccccccCchhhcCCHHHHHHHHHHhchhhhccccchhHHHHHHHhcccHhhhcChHHHHHHHHHHhc--cCcccCchHHH
Confidence 8999999999999999999999999 56777888999999999999999999999999999999994 43334445688
Q ss_pred HhhhhchhhHHHHHHHHHHHhHhhhccCCCccccccchhhHHHHHHHHHHhCChhhHHHHHHHHHHhcchhHHHHHHHHH
Q 002813 672 TLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLI 751 (877)
Q Consensus 672 ~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~I~~Ilk~LW~~~~~r~~l~~~a~~~~~~~FvrFvnlLi 751 (877)
.+|+.++.+. |+|+||+||||||.||+++|||||||+||+|+.|++++|.+|.||.++.+.++++ ++.|+||+|++|
T Consensus 593 ~v~~~~~~~~--L~~~llr~yv~ie~tg~s~qfydKfnvr~~i~~i~~~mw~~pa~~~~~~~~~~~~-~~~f~rfvn~l~ 669 (943)
T KOG2042|consen 593 RVIEAHENGG--LVPCLLRFYVDIESTGQSSQFYDKFNVRRNISEILEYMWQDPAYRGEFMDEAKDA-PPVFVRFVNMLL 669 (943)
T ss_pred HHHHhccccc--cchhhhhheeeeecCCCchhHHHHhHHHhhHHHHHHHHhcCccccchhhhhcccc-chHHHHHHHHHh
Confidence 8999888765 9999999999999999999999999999999999999999999999999999986 899999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcH
Q 002813 752 NDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLP 831 (877)
Q Consensus 752 ND~tfLLDEsL~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~p 831 (877)
||+||||||++++|.+||++|..++|.++|..++.++|+++.+.+++++|+||+|+.+|++|+.||+++|++||+||++|
T Consensus 670 Nd~t~lLDE~l~~L~~i~~iq~~~kn~~q~~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~ 749 (943)
T KOG2042|consen 670 NDATFLLDESLSELMEIHQIQPSGKNIDQWTKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLP 749 (943)
T ss_pred hhHHHHHhHHHHHhhhhhhhhhhhhhhhhccCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccCCccccCCcccCCChHHHHhhhcC
Q 002813 832 EMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877 (877)
Q Consensus 832 eivdRlA~MLNynL~~LvGPkc~~LKVknpekY~F~Pk~lL~~i~~ 877 (877)
|+|+|+|+||||||.+||||||.+||||||++|+|+||++|++|++
T Consensus 750 elv~rla~MLN~nL~~lvGPK~~~Lkvkdp~~y~fePk~ll~~i~~ 795 (943)
T KOG2042|consen 750 ELVERLAAMLNYNLSQLVGPKCSDLKVKDPEKYGFEPKQLLSQLSD 795 (943)
T ss_pred hHHHHHHHHHhhhHHHhhCCcccccccCCccccCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999874
No 4
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=2.5 Score=47.03 Aligned_cols=232 Identities=21% Similarity=0.215 Sum_probs=136.5
Q ss_pred CcccccchhHHHHhHHHHHHHHhhc--C-cc-ccccc----hhHHHHHHHHHhCCCCCccChhhhhhHHHHHHh--hcCC
Q 002813 593 PMEFACMPEHFVEDAMELLIFASRI--P-KA-LDGVL----LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC--WMPR 662 (877)
Q Consensus 593 p~~f~~lPE~~iEdi~d~~~fi~r~--p-~~-l~~~~----~~~li~~~i~~l~~~~~ikNPhLraklvevL~~--~~p~ 662 (877)
-..|+.+||+|+.-....+.-++.| | +. ++..+ +....+|.-+--..| .|--.-.|-.+.+.|.. +.|+
T Consensus 19 gslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~-riv~a~~kdsllqal~t~~c~~~ 97 (489)
T KOG4692|consen 19 GSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADP-RIVLASCKDSLLQALGTLTCHKS 97 (489)
T ss_pred cchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCc-eeeechhHHHHHHHhhheeechh
Confidence 3569999999999998888888776 3 11 22223 333444443333344 34345567777777754 3342
Q ss_pred CCCCcchhHHhhhhchhhHHHHHHHHHHHhHh---hhc--------cCCCccccccchhhHHH-HHHHHHHhCChh----
Q 002813 663 RSGSSSATATLFEGHQMSLEYLVRNLLKLYVD---IEF--------TGSHTQFYDKFNIRHNI-AELLEYLWQVPS---- 726 (877)
Q Consensus 663 ~~~~~~~~~~lf~~~~l~~~~L~~aLm~fYvd---vE~--------TG~~sqFYdKFn~R~~I-~~Ilk~LW~~~~---- 726 (877)
| +..+=...+-.+-.++.+|+.-|-. +.. -|. .| .||++= ..+++.=-.|..
T Consensus 98 --~----vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~--Gf----~y~~~r~phl~rsr~~n~~~~sl 165 (489)
T KOG4692|consen 98 --G----VRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGS--GF----SYLKNREPHLCRSRSRNETHTSL 165 (489)
T ss_pred --h----hhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccC--Cc----cccccCCchhhhhhhcccccccc
Confidence 1 2222222333444566666665532 111 121 12 222221 123333222222
Q ss_pred -------hHHHHHHHHHHhcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCHHHHHHHHHHHHHh
Q 002813 727 -------HRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQ 799 (877)
Q Consensus 727 -------~r~~l~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~~l~~~ 799 (877)
+-+++...+--+++++-.-|.|.++|-.+|-+-|-.-.+.||.+.-+.|+++- .-...
T Consensus 166 ~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~---------------~e~~Q 230 (489)
T KOG4692|consen 166 SSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTL---------------FEPFQ 230 (489)
T ss_pred cCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc---------------cCHHH
Confidence 22233322212246788899999999999999998887777765544443211 00112
Q ss_pred hhhhhhhhhcHHHHHHHHHHHHHhccCCCCc------HHHHHHHHHHHHHHHHhhcCcc
Q 002813 800 ENIIRIDMKLANEDVSMLAFTSEQIVAPFLL------PEMIERVASMLNYFLLQLVGPQ 852 (877)
Q Consensus 800 er~~rs~~~La~etv~ml~~lT~~i~~~Fl~------peivdRlA~MLNynL~~LvGPk 852 (877)
.+.|--.+.|+-.-++.|...+...|+.|+. .-+.+||+..||..|.....|.
T Consensus 231 lk~C~~cFeLsvsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~ 289 (489)
T KOG4692|consen 231 LKKCCVCFELSVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEF 289 (489)
T ss_pred HhHhhhhHHHHHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhcccc
Confidence 2567777888889999999999999999972 3678999999999998776554
No 5
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.01 E-value=70 Score=30.09 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHhchhhhc
Q 002813 313 VMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAH 354 (877)
Q Consensus 313 ~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~vl~~N~~R~k 354 (877)
+|...+...|..|+.|-+ +.-+|.+.-.|+|..+..+.....
T Consensus 58 ~lR~~R~~ah~~fd~lw~~~~~~R~~aY~wLA~~lgi~~~~cH 100 (102)
T PF11672_consen 58 ELRRARKAAHRAFDPLWQSGHMSRSDAYRWLAKKLGIPVEECH 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHcCCChHhcc
Confidence 566778889999999999 567899999999999988776544
No 6
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=26.20 E-value=3.3e+02 Score=27.58 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHHHHHHHHHHHHH
Q 002813 500 SDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVD 579 (877)
Q Consensus 500 ~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~F~~~~~~wL~r 579 (877)
.++.....++++++++++...++.+-.--.+++..+.++.+++|.-...+-. ++ .+ ..- --++-||.+...+..-
T Consensus 44 kk~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~qs~n~~~-q~-~~-~K~--vlSv~f~vl~~~~~~~ 118 (175)
T KOG4253|consen 44 KKESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQSKNKTA-QA-HL-HKW--VLSVAFYVLKIMYGKT 118 (175)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HH-HHH--HHHHHHHHHHHHHhhc
Confidence 5677788888899888887654322122345667777777777655443322 12 11 111 1223344443333221
Q ss_pred HhcCCCCCCCCCCCcccccchhHHHHhHHHHHHHHh
Q 002813 580 LVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFAS 615 (877)
Q Consensus 580 l~~~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~fi~ 615 (877)
.+ . .....+-..+|-|.+.--.+...++-
T Consensus 119 ~~----~---K~ss~pv~~~Ptf~~~~w~~~~l~~p 147 (175)
T KOG4253|consen 119 PV----Y---KLSSSPVTLFPTFVSGVWSQGWLYVP 147 (175)
T ss_pred ee----e---eecCCceeeecchhccchhHHHHHHH
Confidence 11 1 11222345677777765666666553
No 7
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.54 E-value=2.5e+02 Score=30.97 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=45.1
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHhHHHHhhhhccCh
Q 002813 488 ARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQ--TPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDG 560 (877)
Q Consensus 488 ~~~lhlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp 560 (877)
+|-+.--+.-+..+......+|.+++.+|.+|+..+-- =....++.+||..+++++++++..-.++. -|.|.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs-sL~ek 143 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS-SLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchh
Confidence 33333335555555555666777777777777654321 01234566788888888888877777777 66665
No 8
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.70 E-value=95 Score=31.42 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhHHHHhh
Q 002813 496 LKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEA 554 (877)
Q Consensus 496 ~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 554 (877)
.+...++..+.+++.++++++..+.++.+-.--..++.++.+++++++++.......++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777665432110000112466777788888877666555444
No 9
>PF04664 OGFr_N: Opioid growth factor receptor (OGFr) conserved region; InterPro: IPR006757 Opioid peptides act as growth factors in neural and non-neural cells and tissues, in addition to serving in neurotransmission/neuromodulation in the nervous system. The opioid growth factor receptor is an integral membrane protein associated with the nucleus. This conserved domain is situated at the N terminus of the member proteins with a series of imperfect repeats lying immediately to its C-terminal [].; GO: 0004872 receptor activity, 0016020 membrane
Probab=18.55 E-value=2e+02 Score=30.70 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=42.6
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHH--HHhc--ChhhHHHHHHHHHHHHHhchhhhcc
Q 002813 302 DLLSSFTTIKT-VMRGLYKDLGDVLL--ALLK--NTDTRENVLEYLAEVINRNSSRAHI 355 (877)
Q Consensus 302 ~v~~~~~sl~~-~l~~~~~~L~~I~~--~Llr--~~~sRe~vL~w~a~vl~~N~~R~k~ 355 (877)
.|..+..+|.. .++.+...|+..+. .++. .+..|+.+++|+..++...++|+++
T Consensus 130 RITRILksL~~LG~e~~a~~L~~f~~~e~~~~~~~~~v~~s~l~YW~~av~~~~~r~~l 188 (213)
T PF04664_consen 130 RITRILKSLGELGLEHYAAPLVKFFLEETLVHQELPNVRQSTLDYWVNAVRDKEERREL 188 (213)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHhCHHHHHHH
Confidence 44455566652 46677888888887 5666 4789999999999999999999997
No 10
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=16.01 E-value=4.5e+02 Score=29.57 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhCCCCCccChhhhhhHHHHHHhhcCCCCCC-c---------ch----hHHhhhh----chhhHHHHHHH
Q 002813 626 LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGS-S---------SA----TATLFEG----HQMSLEYLVRN 687 (877)
Q Consensus 626 ~~~li~~~i~~l~~~~~ikNPhLraklvevL~~~~p~~~~~-~---------~~----~~~lf~~----~~l~~~~L~~a 687 (877)
+..++.+.-.++.++..+-.||+..-|-.+|.+++..+-|+ + .. +.-.|.. ..-.+......
T Consensus 253 LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrT 332 (450)
T COG5095 253 LTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRT 332 (450)
T ss_pred HHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHH
Confidence 45677778888999999999999999999998765422121 1 01 1112222 23334567788
Q ss_pred HHHHhHhhhccC
Q 002813 688 LLKLYVDIEFTG 699 (877)
Q Consensus 688 Lm~fYvdvE~TG 699 (877)
|+|.|.|.|+|-
T Consensus 333 llKafLD~~k~~ 344 (450)
T COG5095 333 LLKAFLDREKTE 344 (450)
T ss_pred HHHHHHhccccc
Confidence 999999999984
Done!