Query 002813
Match_columns 877
No_of_seqs 174 out of 294
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 02:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 100.0 3E-180 1E-184 1605.9 75.6 771 10-877 3-815 (968)
2 2ke4_A CDC42-interacting prote 18.0 2.9E+02 0.01 24.4 6.9 57 498-554 13-83 (98)
3 2f6m_A Suppressor protein STP2 16.4 1.7E+02 0.0057 24.2 4.4 14 750-763 17-30 (65)
4 4ati_A MITF, microphthalmia-as 15.0 85 0.0029 28.8 2.7 53 754-806 65-117 (118)
5 3qoq_A Alginate and motility r 11.8 1.9E+02 0.0065 24.1 3.6 37 699-747 13-49 (69)
6 2qc0_A Uncharacterized protein 10.3 1.5E+03 0.05 24.2 11.6 104 644-775 182-286 (373)
7 3pe0_A Plectin; cytoskeleton, 10.0 1.2E+03 0.04 24.1 10.1 83 495-578 43-131 (283)
8 2yy0_A C-MYC-binding protein; 9.5 1.6E+02 0.0054 23.2 2.2 30 491-520 9-39 (53)
9 3pdy_A Plectin; cytoskeleton, 9.4 6.7E+02 0.023 24.4 7.6 62 497-559 142-209 (210)
10 3hnw_A Uncharacterized protein 8.1 1.1E+03 0.037 21.9 7.9 35 486-520 59-95 (138)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=100.00 E-value=3.3e-180 Score=1605.87 Aligned_cols=771 Identities=25% Similarity=0.419 Sum_probs=697.0
Q ss_pred hHHHHHHHHHHhheeeccCCcCCCCCCeeehhhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChHhHHHHHHHH
Q 002813 10 PEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRR 89 (877)
Q Consensus 10 ~~~~~~~~l~~if~vTl~~~~~~~~~~~~~L~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~R 89 (877)
+|.-.-.+|++||+||+||+. .+|+ .|+. +.|| ++|. .|+.|++|++|++||++.+ +.+.||+||++||+|
T Consensus 3 ~~~~~~~~l~~if~vtl~~~~-~~~~--~~~~--~~el-~~~~--~l~~d~ld~~l~e~ls~~~-~~~~p~~YL~~c~~R 73 (968)
T 3m62_A 3 PEFRSMTAIEDILQITTDPSD-TRGY--SLLK--SEEV-PQGS--TLGVDFIDTLLLYQLTENE-KLDKPFEYLNDCFRR 73 (968)
T ss_dssp CHHHHHHHHHHHHTEESSCCS-SSSC--EECC--SCST-TCCS--CCCGGGHHHHHHHHHHTCS-SCCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHeeecCccc-cCCc--eEee--HHHh-ccCC--CCChhhHHHHHHHHHhcCC-CCCCcHHHHHHHHHH
Confidence 344445679999999999984 2344 4554 5556 3444 5999999999999999876 347999999999999
Q ss_pred HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCC
Q 002813 90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID 169 (877)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~ 169 (877)
|.+++|+++++ ...+++.++++++++||||||++++++||||++++ ..++++.++.+.+
T Consensus 74 ~~~~~r~~~~~---~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~--------------~~~~~~~ll~~~~---- 132 (968)
T 3m62_A 74 NQQQKRITKNK---PNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA--------------FINYITGIVSNVN---- 132 (968)
T ss_dssp HHHHHHHHHTS---TTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCC--------------HHHHHHHHHHTGG----
T ss_pred HHHHHHhcccC---CCchHHHHHHHHHHHHHHHhHHHHhcCCccCCCCc--------------hHHHHHHHHhccc----
Confidence 99999988542 23467789999999999999999999999998654 2357788877531
Q ss_pred CCCCCCCCCCCCChHHHHHHHHhh-ccCChHHHHHHHHHHHH----HHhhhcCcCcc--chhHHHHHHHhhCChhHHHhh
Q 002813 170 GFGNSTSSGSQCPPGFLKEFFEEA-DFDTLDPILKGLYENLR----GSVLNVSALGN--FQQPLRALLYLVSFPVGVKSL 242 (877)
Q Consensus 170 ~~~~~~~~~~~~~~~Fl~eli~~~-~~d~~~~if~~i~~~l~----~~~~~~~~~~~--~~~~l~~l~~L~~~k~ia~~l 242 (877)
...+||.++++|+ ++|++.++|+|+|..+. ..+.++++.++ |++++++|..|+++||||++|
T Consensus 133 -----------~~~~FL~~~i~r~~~d~~l~~~~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~kpia~~l 201 (968)
T 3m62_A 133 -----------SYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEIF 201 (968)
T ss_dssp -----------GTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTSHHHHHHG
T ss_pred -----------chHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHhCccHHHHHH
Confidence 2359999999999 45569999888888885 45556777665 999999999999999999999
Q ss_pred hcCCccCCCccCCCchhhhhhcccccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 002813 243 VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG 322 (877)
Q Consensus 243 ~~~~~f~p~~~~~~G~~~E~~SlLGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~ 322 (877)
+++|+|+|+. ..+|+++|+.|+|||||++||++ |+|+.+||+++.+++++++.++++++|++++.++++||
T Consensus 202 ~~~~~f~P~~-~~~g~~~E~~tlLGp~f~lS~l~--------~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~ 272 (968)
T 3m62_A 202 TKIDGFFADY-SCKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLF 272 (968)
T ss_dssp GGSTTSSCCT-TCCGGGHHHHSTTHHHHTCCTTS--------HHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCcccCCCC-CccHHHHHHHHhHHhhhhcccCC--------cchHhhcCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 36899999999999999999994 78899999999999999999999999999999999999
Q ss_pred HHHHHHhc-ChhhHHHHHHHHHHHHHhchhhhccccCCCccCChhhHHHHHHHHHHhhhhhccCCcccccccCccccccC
Q 002813 323 DVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS 401 (877)
Q Consensus 323 ~I~~~Llr-~~~sRe~vL~w~a~vl~~N~~R~k~~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~ 401 (877)
+|+++||| ++++|++||+|||+|++.||+|++||+||.++||||||+|+++||+|||+||||++++|+||||++||+++
T Consensus 273 ~I~~~llr~s~etR~~~L~w~a~~ln~N~~R~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~ 352 (968)
T 3m62_A 273 FIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNP 352 (968)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTCGGGGSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSC
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHhCcHHHhcCCCccccCccHHHHHHHHHHHHhhhhhccccccchheeChhhcCCC
Confidence 99999999 89999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-ccCCCCcccccCCHHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 002813 402 S-RLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFI 480 (877)
Q Consensus 402 ~-~id~~~eTri~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFi 480 (877)
+ |+|+++|||||+|++|+++||++..+ ...+++|||
T Consensus 353 ~~ridi~~ETrlna~~~e~~~~~~~~~~-------------------------------------------~~~~~~nFI 389 (968)
T 3m62_A 353 SLFIDLSGETRLNSDFKEADAFYDKNRK-------------------------------------------TADSKPNFI 389 (968)
T ss_dssp CSSSCCTTCCBSSCCHHHHHHHHHHHCC-------------------------------------------CSSCCCCHH
T ss_pred CCCCCCChhhhhcCCHHHHHHHHhhccc-------------------------------------------CCCCCCCch
Confidence 5 59999999999999999999975320 134588999
Q ss_pred hhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCh----HHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002813 481 CECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSS----QLNLEITRIEKEIELSSQEKLCYEAQI 556 (877)
Q Consensus 481 tecFFLT~~~lhlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~ 556 (877)
|||||||++|||||+++++.+|+++.++|++++++++++++.++ ..| ..++++++++++++++.+.++|+++ +
T Consensus 390 tecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~--~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~~~-~ 466 (968)
T 3m62_A 390 SDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAA--NHDVFARFITAQLSKMEKALKTTESLRFALQG-F 466 (968)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999987632 233 2467899999999999999999999 8
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhcC--------CCCCCC----------------CCCCcccccchhHHHHhHHHHHH
Q 002813 557 LRDGDLIQHALSFYRLMIVWLVDLVGG--------FKMPLP----------------DTCPMEFACMPEHFVEDAMELLI 612 (877)
Q Consensus 557 L~dp~l~~~~~~F~~~~~~wL~rl~~~--------~~lPLp----------------~~~p~~f~~lPE~~iEdi~d~~~ 612 (877)
++||.++.++++|++++++||+|+++| +++||| +++|++|+|+|||+||||+||+.
T Consensus 467 l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d~~~ 546 (968)
T 3m62_A 467 FAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSL 546 (968)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCCCccccccccccchhcccccCChHHhhCcHHHHHhHHHHHH
Confidence 999999999999999999999999964 678887 36899999999999999999999
Q ss_pred HHhhc-Cccc-cccchhHHHHHHHHHhCCCCCccChhhhhhHHHHHHh-hcCCCCCCcchhHHhhhhchhhHHHHHHHHH
Q 002813 613 FASRI-PKAL-DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC-WMPRRSGSSSATATLFEGHQMSLEYLVRNLL 689 (877)
Q Consensus 613 fi~r~-p~~l-~~~~~~~li~~~i~~l~~~~~ikNPhLraklvevL~~-~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLm 689 (877)
|+.|+ |+.+ .+..++++++|||+||+||+||||||||||+||+|+. ++|..++++|.+.++|++|+++++||++|||
T Consensus 547 F~~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~aLm 626 (968)
T 3m62_A 547 YISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALL 626 (968)
T ss_dssp HHTTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHcCCCccccccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccCCccHHHHHHhcCHHHHHHHHHHHH
Confidence 99999 8655 5679999999999999999999999999999999985 7898777778899999999999999999999
Q ss_pred HHhHhhhccCCCccccccchhhHHHHHHHHHHh-CChhhHHHHHHHHHHhcchhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002813 690 KLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEL 768 (877)
Q Consensus 690 ~fYvdvE~TG~~sqFYdKFn~R~~I~~Ilk~LW-~~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I 768 (877)
+||||||+||+|+|||||||+||+|++||++|| ++|.||++|+++++++ +++|+|||||||||+||||||||++|++|
T Consensus 627 ~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~-~~~FvrFvNlLiND~tyLLDEsL~~L~~I 705 (968)
T 3m62_A 627 DFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNN-ADFFVRFVARMLNDLTFLLDEGLSNLAEV 705 (968)
T ss_dssp HHHHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccCCcchHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999875 78999999999999999999999999999
Q ss_pred HHHHHhhccchhhcCC-CHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHh
Q 002813 769 KVIEAEMSNTAEWERR-PAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQ 847 (877)
Q Consensus 769 ~~~q~e~~d~~~w~~l-~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~ 847 (877)
|++|.+++|.+.|... .+|+|+++++.++++||+|||||+||+||++||++||+++|+||++||||+|||+||||||++
T Consensus 706 ~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~ 785 (968)
T 3m62_A 706 HNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLES 785 (968)
T ss_dssp HHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHHHHHHHHH
Confidence 9999999988777653 346789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccCCccccCCcccCCChHHHHhhhcC
Q 002813 848 LVGPQRKSLTLKDPEKYEFRPKQLLKQVST 877 (877)
Q Consensus 848 LvGPkc~~LKVknpekY~F~Pk~lL~~i~~ 877 (877)
||||||++||||||+||||+||+||.+||+
T Consensus 786 LvGPk~~~LKVknpekY~F~Pk~lL~~i~~ 815 (968)
T 3m62_A 786 LVGPKCGELKVKDPQSYSFNPKDLLKALTT 815 (968)
T ss_dssp HHSHHHHTCCCSCGGGGTCCHHHHHHHHHH
T ss_pred hcCccccccccCCHhhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999985
No 2
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=18.01 E-value=2.9e+02 Score=24.44 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-------------C-CCChHHHHHHHHHHHHHHHHHHhHHHHhh
Q 002813 498 AFSDFKHLVQDISRAEDTLATLKATQG-------------Q-TPSSQLNLEITRIEKEIELSSQEKLCYEA 554 (877)
Q Consensus 498 ~~~~~~~l~~~i~~~~~~l~~~~~~~~-------------~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 554 (877)
--++-++|.+.|.+++++++.....+. + |++...+..|.....+++++....+-+++
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777765433221 1 23333466677777777777776666666
No 3
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=16.43 E-value=1.7e+02 Score=24.21 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHHH
Q 002813 750 LINDSIYLLDESLN 763 (877)
Q Consensus 750 LiND~tfLLDEsL~ 763 (877)
-|.|++|.||++|.
T Consensus 17 AieDaiy~L~~aL~ 30 (65)
T 2f6m_A 17 ALTDTIEALSRMLH 30 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999985
No 4
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=15.05 E-value=85 Score=28.81 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhcCCCHHHHHHHHHHHHHhhhhhhhh
Q 002813 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRID 806 (877)
Q Consensus 754 ~tfLLDEsL~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~~l~~~er~~rs~ 806 (877)
-.-.|+.+++++..++.-...+.+...-...-+...++....++++|.+|+.+
T Consensus 65 Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE~~a~~~ 117 (118)
T 4ati_A 65 KGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAH 117 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34568899999998888777765322111111223344556678888888754
No 5
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=11.79 E-value=1.9e+02 Score=24.07 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCCccccccchhhHHHHHHHHHHhCChhhHHHHHHHHHHhcchhHHHHH
Q 002813 699 GSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFL 747 (877)
Q Consensus 699 G~~sqFYdKFn~R~~I~~Ilk~LW~~~~~r~~l~~~a~~~~~~~FvrFv 747 (877)
..++.+++||++|.+ +..++++...|+++ +-..-.+|
T Consensus 13 ~~~sr~~~kf~LRlP-----------~eL~~~L~~~A~~~-grSlNaeI 49 (69)
T 3qoq_A 13 TYSSRTADKFVVRLP-----------EGMREQIAEVARSH-HRSMNSEI 49 (69)
T ss_dssp CCCTTTSEEEEEECC-----------TTHHHHHHHHHHHT-TCCHHHHH
T ss_pred CcccccCCceEEECC-----------HHHHHHHHHHHHHh-CCCHHHHH
Confidence 456789999999987 45688899999876 33333333
No 6
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=10.28 E-value=1.5e+03 Score=24.25 Aligned_cols=104 Identities=11% Similarity=0.085 Sum_probs=52.1
Q ss_pred cChhhhhhHHHHHH-hhcCCCCCCcchhHHhhhhchhhHHHHHHHHHHHhHhhhccCCCccccccchhhHHHHHHHHHHh
Q 002813 644 RNPYLRSKMVEVLN-CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW 722 (877)
Q Consensus 644 kNPhLraklvevL~-~~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~I~~Ilk~LW 722 (877)
-+|.++|-++..-+ .+.|..+| .|.++.++...-+.+. | |..+.+ .+|+..++.
T Consensus 182 ~~pl~~aa~~h~~f~~IHPF~DG-NGR~~Rll~~~~L~~~----------------g-----~~~~~~-~~ls~~~~~-- 236 (373)
T 2qc0_A 182 VDPLIKMAMAHYQFEAIHPFIDG-NGRTGRVLNILYLIDQ----------------Q-----LLSAPI-LYLSRYIVA-- 236 (373)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSC-HHHHHHHHHHHHHHHT----------------T-----SCSSSC-CCTHHHHHH--
T ss_pred CCHHHHHHHHHHHHHhcCCCcCC-chHHHHHHHHHHHHHC----------------C-----CCCccc-ccHHHHHHH--
Confidence 36777777766555 46788887 3444444433222221 2 111111 123333332
Q ss_pred CChhhHHHHHHHHHHhcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 002813 723 QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEM 775 (877)
Q Consensus 723 ~~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~e~ 775 (877)
.-..|.+.+.......+-..|+.|+--.+-++ .+++...+.++.++..++
T Consensus 237 ~r~~Yy~aL~~~~~~~d~~~~i~~~l~~i~~~---~~~~~~~~~~~~~~~~~~ 286 (373)
T 2qc0_A 237 HKQDYYRLLLNVTTQQEWQPWIIFILNAVEQT---AKWTTHKIAAARELIAHT 286 (373)
T ss_dssp THHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 23356666655544333445666666666554 566666666665544443
No 7
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=10.02 E-value=1.2e+03 Score=24.07 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCChHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHH
Q 002813 495 LLKAFSDFKHLVQDISRAEDTLATLKATQ------GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALS 568 (877)
Q Consensus 495 ~~~~~~~~~~l~~~i~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~ 568 (877)
+.....+|+.+..+|..-+..++.+.+.. +.+..+.++..+..++.+++.+...-.|.+. .|.+-.-....+.
T Consensus 43 l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~-~L~~a~~~~qF~~ 121 (283)
T 3pe0_A 43 MTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEA-HLKENAAYFQFFS 121 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44456677777777766666665554321 1134556777888888999888877777777 4543322222222
Q ss_pred HHHHHHHHHH
Q 002813 569 FYRLMIVWLV 578 (877)
Q Consensus 569 F~~~~~~wL~ 578 (877)
-..=+-.||.
T Consensus 122 da~e~e~Wl~ 131 (283)
T 3pe0_A 122 DVREAEGQLQ 131 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 2235567765
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=9.50 E-value=1.6e+02 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHhch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002813 491 LNLGL-LKAFSDFKHLVQDISRAEDTLATLK 520 (877)
Q Consensus 491 lhlG~-~~~~~~~~~l~~~i~~~~~~l~~~~ 520 (877)
.|+|. +|....+..+.++..+++.+++.+.
T Consensus 9 ~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 9 HHLGAATPENPEIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 46664 5777899999999999988887664
No 9
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=9.40 E-value=6.7e+02 Score=24.40 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCChHHHHHHHHHHHHHHHHHHhHHHHhhhhccC
Q 002813 497 KAFSDFKHLVQDISRAEDTLATLKATQ------GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRD 559 (877)
Q Consensus 497 ~~~~~~~~l~~~i~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~d 559 (877)
....+|..+.++|...+..++.+.... +.++++.++.....+..+++.+..-..|.+. .|.|
T Consensus 142 ~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~~L~~L~~~~e~-hLk~ 209 (210)
T 3pdy_A 142 AKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEA-HLKE 209 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 345566666666665555555443321 2234566788888899999999999999888 5644
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=8.06 E-value=1.1e+03 Score=21.91 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002813 486 MTARVLNLG--LLKAFSDFKHLVQDISRAEDTLATLK 520 (877)
Q Consensus 486 LT~~~lhlG--~~~~~~~~~~l~~~i~~~~~~l~~~~ 520 (877)
..++|+++. +...-.++..+.+++..+.+++..++
T Consensus 59 aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK 95 (138)
T 3hnw_A 59 TDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLK 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655 55555666677777777766666655
Done!